diff --git a/.circleci/check-for-additional-platforms.sh b/.circleci/check-for-additional-platforms.sh
new file mode 100755
index 0000000000000..9a0fcd6a304e6
--- /dev/null
+++ b/.circleci/check-for-additional-platforms.sh
@@ -0,0 +1,46 @@
+#!/bin/bash
+
+# Check to see if any changed recipes have specified the key
+# extra:additional-platforms, and if so, if they match the platform of the
+# currently-running machine.
+
+# arguments
+git_range=$1
+job_name=$2
+
+# Download ARM version of yq
+yq_platform=$(uname)
+yq_arch=$(uname -m)
+[[ $yq_arch = "aarch64" ]] && yq_arch="arm64"
+mkdir -p ${HOME}/bin
+wget https://github.com/mikefarah/yq/releases/latest/download/yq_${yq_platform}_${yq_arch} -O ${HOME}/bin/yq
+chmod +x ${HOME}/bin/yq
+
+# Find recipes changed from this merge
+files=`git diff --name-only --diff-filter AMR ${git_range} | grep -E 'meta.yaml$' `
+build=0
+
+for file in $files; do
+    echo $file
+    # To create a properly-formatted yaml that yq can parse, comment out jinja2
+    # variable setting with {% %} and remove variable use with {{ }}.
+    additional_platforms=$(cat $file \
+    | sed -E 's/(.*)\{%(.*)%\}(.*)/# \1\2\3/g' \
+    | tr -d '{{' | tr -d '}}' \
+    | ${HOME}/bin/yq '.extra.additional-platforms[]')
+    # Check if any additional platforms match this job
+    for additional_platform in $additional_platforms; do
+    if [ "${CIRCLE_JOB}" = "${job_name}-${additional_platform}" ]
+    then
+        build=1
+        break
+    fi
+    done
+done
+
+# If no changed recipes apply to this platform, skip remaining steps
+if [[ build -lt 1 ]]
+then
+    echo "No recipes using this platform, skipping rest of job."
+    circleci-agent step halt
+fi
diff --git a/.circleci/config.yml b/.circleci/config.yml
new file mode 100644
index 0000000000000..201b46c7dea43
--- /dev/null
+++ b/.circleci/config.yml
@@ -0,0 +1,262 @@
+# .circleci/config.yml
+version: 2.1
+
+executors:
+  # osx-arm64:
+  #   macos:
+  #     xcode: 14.2.0 # indicate your selected version of Xcode
+  #   resource_class: macos.m1.large.gen1
+  linux-aarch64:
+    machine:
+      image: ubuntu-2204:current
+    resource_class: arm.medium
+
+jobs: # a basic unit of work in a run
+  build_and_test:
+    parameters:
+      os:
+        type: executor
+    executor: << parameters.os >>
+    steps:
+      - checkout
+
+      - run:
+          name: Check for Additional Platforms
+          command: ./.circleci/check-for-additional-platforms.sh "origin/master...HEAD" "build_and_test"
+
+      - run:
+          name: Fetch bioconda install script
+          command: wget https://raw.githubusercontent.com/bioconda/bioconda-common/master/{common,install-and-set-up-conda,configure-conda}.sh
+
+      - run:
+          name: Install bioconda-utils
+          command: |
+            sudo mkdir -p /opt/
+            sudo chmod o+rwx /opt
+            bash install-and-set-up-conda.sh
+
+      - run:
+          name: Setup PATH
+          command:
+            echo 'export PATH=/opt/mambaforge/bin:"$PATH"' >> "$BASH_ENV"
+
+      # We reconfigure conda to use the right channel setup.
+      # This has to be done after the cache is restored, because
+      # the channel setup is not cached as it resides in the home directory.
+      # We could use a system-wide (and therefore cached) channel setup,
+      # but mamba does not support that at the time of implementation
+      # (it ignores settings made by --system).
+      - run:
+          name: Configure conda
+          command: bash configure-conda.sh
+
+      - run:
+          name: Build and test
+          command: |
+            . common.sh
+            source /opt/mambaforge/etc/profile.d/conda.sh
+            source /opt/mambaforge/etc/profile.d/mamba.sh
+            mamba activate bioconda
+            bioconda-utils build recipes config.yml \
+                --lint --docker --mulled-test \
+                --docker-base-image "quay.io/bioconda/bioconda-utils-build-env-cos7-$(arch):${BIOCONDA_UTILS_TAG#v}" \
+                --git-range origin/master HEAD
+
+      - run:
+          name: Prepare artifacts
+          command: |
+            (
+            mkdir -p /tmp/artifacts/packages
+            cd /opt/mambaforge/envs/bioconda/conda-bld || exit 0
+            find -name .cache | xargs rm -rf || true
+            for n in index.html channeldata.json linux-aarch64 linux-64 osx-64 noarch; do
+              cp -rv $n /tmp/artifacts/packages || true
+            done
+            if command -V docker >/dev/null; then
+              mkdir -p /tmp/artifacts/images
+              cd /tmp/artifacts/images
+              docker image ls --format='{{.Repository}}:{{.Tag}}' | \
+                { grep biocontainers || true ; } | \
+                xargs -n1 -P4 bash -c '
+                  test -n "${1+x}" || exit 0
+                  echo "Start compressing docker image ${1} ..."
+                  docker save "${1}" | gzip -c > "${1##*/}.tar.gz"
+                  echo "Finished compressing docker image ${1} ."
+                  ' --
+            fi
+            ) || true
+
+      - store_artifacts:
+          path: /tmp/artifacts
+
+  build_and_upload:
+    parameters:
+      os:
+        type: executor
+    executor: << parameters.os >>
+    steps:
+      - checkout
+
+      - run:
+          name: Check for Additional Platforms
+          command: ./.circleci/check-for-additional-platforms.sh "${CIRCLE_SHA1}~1 ${CIRCLE_SHA1}" "build_and_upload"
+
+      - run:
+          name: Fetch bioconda install script
+          command: wget https://raw.githubusercontent.com/bioconda/bioconda-common/master/{common,install-and-set-up-conda,configure-conda}.sh
+
+      - run:
+          name: Install bioconda-utils
+          command: |
+            sudo mkdir -p /opt
+            sudo chmod o+rwx /opt
+            bash install-and-set-up-conda.sh
+
+      - run:
+          name: Setup PATH
+          command:
+            echo 'export PATH=/opt/mambaforge/bin:"$PATH"' >> "$BASH_ENV"
+
+      # We reconfigure conda to use the right channel setup.
+      # This has to be done after the cache is restored, because
+      # the channel setup is not cached as it resides in the home directory.
+      # We could use a system-wide (and therefore cached) channel setup,
+      # but mamba does not support that at the time of implementation
+      # (it ignores settings made by --system).
+      - run:
+          name: Configure conda
+          command: bash configure-conda.sh
+
+      - run:
+          name: Build and push
+          command: |
+            source /opt/mambaforge/etc/profile.d/conda.sh
+            source /opt/mambaforge/etc/profile.d/mamba.sh
+            mamba activate bioconda
+            bioconda-utils handle-merged-pr recipes config.yml \
+              --repo bioconda/bioconda-recipes \
+              --git-range ${CIRCLE_SHA1}~1 ${CIRCLE_SHA1} \
+              --fallback build \
+              --artifact-source circleci
+
+  bulk_build:
+    parameters:
+      os:
+        type: executor
+      runner:
+        type: integer
+    executor: << parameters.os >>
+    steps:
+      - add_ssh_keys:
+          fingerprints:
+            - 1e:85:74:42:35:5f:c5:a2:35:c2:ec:b7:80:c0:7c:40
+
+      - checkout
+
+      - run:
+          name: Check for [ci run]
+          command: |
+            commit_message="$(git log --format=oneline -n 1 $CIRCLE_SHA1)"
+            if [[ $commit_message  =~ "[ci run]" ]]; then
+              echo "[ci run] found, continuing."
+            else
+              echo "[ci run] not found, exiting."
+              circleci-agent step halt
+            fi
+
+      - run:
+          name: set git user
+          command: |
+            git config user.name BiocondaBot
+            git config user.email biocondabot@users.noreply.github.com
+            git branch --set-upstream-to=origin/$CIRCLE_BRANCH $CIRCLE_BRANCH
+
+      - run:
+          name: Fetch bioconda install script
+          command: wget https://raw.githubusercontent.com/bioconda/bioconda-common/bulk/{common,install-and-set-up-conda,configure-conda}.sh
+
+      - run:
+          name: Install bioconda-utils
+          command: |
+            sudo mkdir -p /opt/
+            sudo chmod o+rwx /opt
+            bash install-and-set-up-conda.sh
+
+      - run:
+          name: Setup PATH
+          command:
+            echo 'export PATH=/opt/mambaforge/bin:"$PATH"' >> "$BASH_ENV"
+
+      # We reconfigure conda to use the right channel setup.
+      # This has to be done after the cache is restored, because
+      # the channel setup is not cached as it resides in the home directory.
+      # We could use a system-wide (and therefore cached) channel setup,
+      # but mamba does not support that at the time of implementation
+      # (it ignores settings made by --system).
+      - run:
+          name: Configure conda
+          command: bash configure-conda.sh
+
+      # For now, do not upload ARM images to biocontainers: --mulled-upload-target biocontainers
+      - run:
+          name: Build and upload
+          command: |
+            set -e
+            . common.sh
+            source /opt/mambaforge/etc/profile.d/conda.sh
+            source /opt/mambaforge/etc/profile.d/mamba.sh
+            mamba activate bioconda
+            echo '============'
+            conda info --all
+            conda config --show-sources
+            python -c 'import bioconda_utils.utils as u ; import pathlib as p ; print(*(f"{f}:\n{p.Path(f).read_text()}" for f in u.load_conda_build_config().exclusive_config_files), sep="\n")'
+            echo '============'
+            bioconda-utils build recipes config.yml \
+              --worker-offset << parameters.runner >> --n-workers 6 \
+              --docker --mulled-test --docker-base-image "quay.io/bioconda/bioconda-utils-build-env-cos7-$(arch):${BIOCONDA_UTILS_TAG#v}" \
+              --anaconda-upload \
+              --mulled-upload-target biocontainers \
+              --record-build-failures \
+              --skiplist-leafs
+            conda clean -y --all
+
+
+workflows:
+  build and test (ARM):
+    jobs:
+      - build_and_test:
+          filters:
+            branches:
+              ignore:
+                - master
+                - bulk
+          matrix:
+            parameters:
+              os:
+                #- osx-arm64
+                - linux-aarch64
+
+  build and upload (ARM):
+    jobs:
+      - build_and_upload:
+          filters:
+            branches:
+              only: master
+          matrix:
+            parameters:
+              os:
+                #- osx-arm64
+                - linux-aarch64
+
+  Bulk branch (ARM):
+    jobs:
+      - bulk_build:
+          filters:
+            branches:
+              only: bulk
+          matrix:
+            parameters:
+              os: 
+                #- osx-arm64
+                - linux-aarch64
+              runner: [0, 1, 2, 3, 4, 5]
diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md
index 4087154ef8e18..52cb292d05997 100644
--- a/.github/PULL_REQUEST_TEMPLATE.md
+++ b/.github/PULL_REQUEST_TEMPLATE.md
@@ -4,11 +4,40 @@ Describe your pull request here
 
 Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR).
 
+### General instructions
+
 * If this PR adds or updates a recipe, use "Add" or "Update" appropriately as the first word in its title.
 * New recipes not directly relevant to the biological sciences need to be submitted to the [conda-forge channel](https://conda-forge.org/docs/) instead of Bioconda.
 * PRs require reviews prior to being merged. Once your PR is passing tests and ready to be merged, please issue the `@BiocondaBot please add label` command.
 * Please post questions [on Gitter](https://gitter.im/bioconda/Lobby) or ping `@bioconda/core` in a comment.
 
+### Instructions for avoiding API, ABI, and CLI breakage issues
+Conda is able to record and lock (a.k.a. pin) dependency versions used at build time of other recipes.
+This way, one can avoid that expectations of a downstream recipe with regards to API, ABI, or CLI are violated by later changes in the recipe.
+If not already present in the meta.yaml, make sure to specify `run_exports` (see [here](https://bioconda.github.io/contributor/linting.html#missing-run-exports) for the rationale and comprehensive explanation).
+Add a `run_exports` section like this:
+
+```yaml
+build:
+  run_exports:
+    - ...
+
+```
+
+with `...` being one of:
+
+| Case                             | run_exports statement                                               |
+| -------------------------------- | ------------------------------------------------------------------- |
+| semantic versioning              | `{{ pin_subpackage("myrecipe", max_pin="x") }}`     |
+| semantic versioning (0.x.x)      | `{{ pin_subpackage("myrecipe", max_pin="x.x") }}`   |
+| known breakage in minor versions | `{{ pin_subpackage("myrecipe", max_pin="x.x") }}` (in such a case, please add a note that shortly mentions your evidence for that) |
+| known breakage in patch versions | `{{ pin_subpackage("myrecipe", max_pin="x.x.x") }}` (in such a case, please add a note that shortly mentions your evidence for that) |
+| calendar versioning              | `{{ pin_subpackage("myrecipe", max_pin=None) }}`    |
+
+while replacing `"myrecipe"` with either `name` if a `name|lower` variable is defined in your recipe or with the lowercase name of the package in quotes.
+
+### Bot commands for PR management
+
 <details>
   <summary>Please use the following BiocondaBot commands:</summary>
 
@@ -29,14 +58,7 @@ Everyone has access to the following BiocondaBot commands, which can be given in
   </tr>
 </table>
 
-For members of the Bioconda project, the following command is also available:
-
-<table>
-  <tr>
-    <td><code>@BiocondaBot please merge</code></td>
-    <td>Upload built packages/containers and merge a PR. <br />Someone must approve a PR first! <br />This reduces CI build time by reusing built artifacts.</td>
-  </tr>
-</table>
+Note that the <code>@BiocondaBot please merge</code> command is now depreciated. Please just squash and merge instead.
 
 Also, the bot watches for comments from non-members that include `@bioconda/<team>` and will automatically re-post them to notify the addressed `<team>`.
 
diff --git a/.github/workflows/Bulk.yml b/.github/workflows/Bulk.yml
index c6ecd8670d8ae..8a3ec217f3ebb 100644
--- a/.github/workflows/Bulk.yml
+++ b/.github/workflows/Bulk.yml
@@ -16,13 +16,13 @@ jobs:
     steps:
       - uses: actions/checkout@v3
         with:
-          # checkout as bioconda-bot in order to have the permission to push fail logs
+          # checkout as BiocondaBot in order to have the permission to push fail logs
           token: ${{secrets.BIOCONDA_BOT_REPO_TOKEN}}
-      
+
       - name: set git user
         run: |
-          git config user.name bioconda-bot
-          git config user.email bioconda-bot@users.noreply.github.com
+          git config user.name BiocondaBot
+          git config user.email BiocondaBot@users.noreply.github.com
 
       - name: set path
         run: echo "/opt/mambaforge/bin" >> $GITHUB_PATH
@@ -71,13 +71,13 @@ jobs:
           bioconda-utils build recipes config.yml \
             --worker-offset ${{ matrix.runner }} --n-workers 6 \
             --docker --mulled-test --anaconda-upload --mulled-upload-target biocontainers \
-            --record-build-failures --skiplist-leafs
+            --lint --record-build-failures --skiplist-leafs
           conda clean -y --all
 
   build-osx:
     name: Bulk OSX Builds
     if: "contains(github.event.head_commit.message, '[ci run]')"
-    runs-on: macOS-latest
+    runs-on: macos-13
     strategy:
       fail-fast: false
       max-parallel: 4
@@ -86,9 +86,14 @@ jobs:
     steps:
       - uses: actions/checkout@v3
         with:
-          # checkout as bioconda-bot in order to have the permission to push fail logs
+          # checkout as BiocondaBot in order to have the permission to push fail logs
           token: ${{secrets.BIOCONDA_BOT_REPO_TOKEN}}
 
+      - name: set git user
+        run: |
+          git config user.name BiocondaBot
+          git config user.email BiocondaBot@users.noreply.github.com
+
       - name: set path
         run: echo "/opt/mambaforge/bin" >> $GITHUB_PATH
 
@@ -140,5 +145,5 @@ jobs:
           echo '============'
           bioconda-utils build recipes config.yml \
             --worker-offset ${{ matrix.runner }} --n-workers 4 \
-            --anaconda-upload --record-build-failures --skiplist-leafs
+            --lint --anaconda-upload --record-build-failures --skiplist-leafs
           conda clean -y --all
diff --git a/.github/workflows/PR.yml b/.github/workflows/PR.yml
index f7bbb0178d3fd..272739ef7b06a 100644
--- a/.github/workflows/PR.yml
+++ b/.github/workflows/PR.yml
@@ -165,7 +165,7 @@ jobs:
 
   build-osx:
     name: OSX Tests
-    runs-on: macOS-latest
+    runs-on: macos-13
     strategy:
       fail-fast: true
       max-parallel: 4
diff --git a/.github/workflows/build-failures.yml b/.github/workflows/build-failures.yml
index 35b23b0eb1aa9..5037e91ec987e 100644
--- a/.github/workflows/build-failures.yml
+++ b/.github/workflows/build-failures.yml
@@ -59,9 +59,9 @@ jobs:
         uses: docker://decathlon/wiki-page-creator-action:latest
         env:
           GH_PAT: ${{secrets.BIOCONDA_BOT_REPO_TOKEN}}
-          ACTION_MAIL: bioconda-bot@users.noreply.github.com
-          ACTION_NAME: bioconda-bot
+          ACTION_MAIL: BiocondaBot@users.noreply.github.com
+          ACTION_NAME: BiocondaBot
           OWNER: bioconda
           REPO_NAME: bioconda-recipes
           MD_FOLDER: build-failures
-          
+          
\ No newline at end of file
diff --git a/.github/workflows/master.yml b/.github/workflows/master.yml
index 4a3fd95875aab..e698443590e50 100644
--- a/.github/workflows/master.yml
+++ b/.github/workflows/master.yml
@@ -71,7 +71,7 @@ jobs:
   build-osx:
     name: OSX Upload
     if: github.repository == 'bioconda/bioconda-recipes'
-    runs-on: macOS-latest
+    runs-on: macos-13
     strategy:
       fail-fast: false
       max-parallel: 4
diff --git a/.github/workflows/nightly.yml b/.github/workflows/nightly.yml
index f2954e626d069..11d48c1154598 100644
--- a/.github/workflows/nightly.yml
+++ b/.github/workflows/nightly.yml
@@ -65,7 +65,7 @@ jobs:
   build-osx:
     name: OSX Tests
     if: github.repository == 'bioconda/bioconda-recipes'
-    runs-on: macOS-latest
+    runs-on: macos-13
     strategy:
       fail-fast: false
       max-parallel: 4
diff --git a/README.md b/README.md
index eedda1c1b8582..046ac7a353fcc 100644
--- a/README.md
+++ b/README.md
@@ -6,8 +6,8 @@
 [![Gitter](https://badges.gitter.im/bioconda/bioconda-recipes.svg)](https://gitter.im/bioconda/Lobby?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge)
 
 [Conda](http://anaconda.org) is a platform- and language-independent package
-manager that sports easy distribution, installation and version management of
-software.  The [bioconda channel](https://anaconda.org/bioconda) is a Conda
+manager that supports easy distribution, installation and version management of
+software. The [bioconda channel](https://anaconda.org/bioconda) is a Conda
 channel providing bioinformatics related packages for **Linux** and **Mac OS**.
 This repository hosts the corresponding recipes.
 
diff --git a/azure-pipeline-master.yml b/azure-pipeline-master.yml
index 30030ff694fed..8cf42d62dcb1f 100644
--- a/azure-pipeline-master.yml
+++ b/azure-pipeline-master.yml
@@ -118,7 +118,6 @@ jobs:
           conda activate bioconda
           export OSTYPE="darwin"
           export CI="true"
-          export HOME=`pwd`
 
           bioconda-utils handle-merged-pr recipes config.yml \
             --repo bioconda/bioconda-recipes \
diff --git a/azure-pipeline-nightly.yml b/azure-pipeline-nightly.yml
index fd7f1f5e7da97..eac4139cd5875 100644
--- a/azure-pipeline-nightly.yml
+++ b/azure-pipeline-nightly.yml
@@ -76,7 +76,7 @@ jobs:
           # build and push all leftover packages
           bioconda-utils build recipes config.yml \
               --docker --mulled-test --anaconda-upload --mulled-upload-target biocontainers \
-              --prelint
+              --prelint --exclude bioconda-repodata-patches
           docker rmi quay.io/dpryan79/mulled_container:latest
         env:
           QUAY_OAUTH_TOKEN: $(QUAY_OAUTH_TOKEN)
@@ -133,7 +133,6 @@ jobs:
           conda activate bioconda
           export OSTYPE="darwin"
           export CI="true"
-          export HOME=`pwd`
           bioconda-utils build recipes config.yml \
               --anaconda-upload \
               --prelint
diff --git a/build-fail-blacklist b/build-fail-blacklist
index 5e56f0899fc7e..0acd1e920000d 100644
--- a/build-fail-blacklist
+++ b/build-fail-blacklist
@@ -1,3 +1,7 @@
+# ----- 2023-12-02 problematic on bulk -----
+r-ramclustr
+# ------------------------------------------
+
 # Currently kills bulk, and dependants 
 recipes/bioconductor-missmethyl
 recipes/bioconductor-conumee
@@ -13,21 +17,6 @@ recipes/bioconductor-champ
 recipes/bioconductor-appreci8r
 recipes/bioconductor-mirsm
 
-# Needs r-xgboost migration
-recipes/bioconductor-bambu
-recipes/bioconductor-bayesspace
-recipes/bioconductor-ccmap
-recipes/bioconductor-classifyr
-recipes/bioconductor-gnet2
-recipes/bioconductor-infinityflow
-recipes/bioconductor-mistyr
-recipes/bioconductor-scate
-recipes/bioconductor-scdblfinder
-recipes/bioconductor-scds
-recipes/bioconductor-trena
-recipes/bioconductor-flames
-recipes/bioconductor-singlecelltk
-
 # Allegedly requires ancient gatb
 recipes/lordec
 
@@ -35,8 +24,6 @@ recipes/lordec
 recipes/octopus
 recipes/bttcmp
 recipes/bttoxin_scanner
-recipes/cgat-apps
-recipes/hatchet
 recipes/hail
 recipes/monocle3-cli
 recipes/phenix
@@ -47,6 +34,7 @@ recipes/bioconductor-mafdb.gnomad.r2.1.hs37d5
 recipes/bioconductor-mafdb.gnomad.r2.1.grch38
 recipes/bioconductor-snplocs.hsapiens.dbsnp155.grch37
 recipes/bioconductor-snplocs.hsapiens.dbsnp155.grch38
+recipes/bioconductor-trena
 
 # x86_64-conda-linux-gnu-cc: error: unrecognized command-line option '-R'
 recipes/ncbi-util-legacy
@@ -107,7 +95,6 @@ recipes/workspace
 recipes/wtforms-alchemy
 recipes/wtforms-components
 recipes/xmlbuilder
-recipes/yaggo
 
 # the following packages have open PRs labeled with "Move to conda-forge"
 recipes/perl-alien-build
@@ -144,7 +131,6 @@ recipes/popscle
 # Maven no longer accepts http connections https://github.com/rdpstaff/ReadSeq/issues/2
 recipes/rdp-readseq
 
-
 # Only specific versions are failing
 recipes/emmix/1.3
 recipes/hyphy/2.3.11
@@ -187,11 +173,8 @@ recipes/bwa/0.6.2
 # fails compilation in bulk on Linux
 recipes/paragraph
 recipes/selectsequencesfrommsa
-recipes/rappas
-recipes/centrifuge
 recipes/nasp
 recipes/mmvc
-recipes/expansionhunter
 recipes/gemma
 recipes/roary
 recipes/deltabs
@@ -247,7 +230,6 @@ recipes/bmtool
 recipes/sibelia
 recipes/var-agg
 recipes/wham
-recipes/percolator
 
 # Segfaults in bulk on Linux 24.3.2021
 recipes/dbgraph
@@ -263,11 +245,9 @@ recipes/ngsep
 recipes/rnabridge-denovo
 recipes/eval
 recipes/minorseq
-recipes/prosampler
 recipes/methylextract
 recipes/blasr
 recipes/asn2gb
-recipes/skesa
 recipes/orfm
 recipes/maaslin
 recipes/seqmap
@@ -321,13 +301,11 @@ recipes/rsat-core
 recipes/ig-checkflowtypes
 recipes/bufet
 recipes/mapsplice
-recipes/pasta
 recipes/halla
 recipes/qtip
 recipes/tagger
 recipes/compare-reads
 recipes/strainest
-recipes/methylpy
 recipes/t_coffee
 recipes/shannon_cpp
 recipes/ecopy
@@ -341,7 +319,6 @@ recipes/bam-readcount
 recipes/mqc
 recipes/roprofile
 recipes/chanjo
-recipes/xxmotif
 recipes/phylip
 recipes/gqt
 recipes/diamond_add_taxonomy
@@ -374,16 +351,9 @@ recipes/conduit-assembler
 recipes/metabat2
 recipes/bcftools-snvphyl-plugin
 
-# error: no matching package named `bird_tool_utils` found location searched: https://github.com/wwood/galah#8440eeb8 required by package `galah v0.3.1 (https://github.com/wwood/galah#8440eeb8)` ... which satisfies git dependency `galah` of package `lorikeet-genome v0.7.3
-recipes/lorikeet-genome
-
 # rnamoves.c:(.text.RNA2_move_noLP_bpshift+0x1f): undefined reference to `close_bp'
 recipes/kinsimriboswitch
 
-# Package seems to build fine, but then can't be found when uploading for some reason.
-# the built package /home/runner/miniconda/envs/bioconda/conda-bld/noarch/ngscheckmate-1.0.0-py27r42hdfd78af_4.tar.bz2 cannot be found
-recipes/ngscheckmate
-
 # configure: error: R package gtools not found.
 # (even though r-gtools is in host: and run:
 recipes/footprint
@@ -447,9 +417,6 @@ recipes/intervalstats
 recipes/oligotyping
 recipes/oligotyping/2.0
 
-# missing file
-recipes/shiver
-
 # missing binary
 recipes/semeta
 
@@ -585,7 +552,6 @@ recipes/rnaclust
 
 # Unknown issues
 recipes/lorma
-recipes/microbecensus
 recipes/minialign
 recipes/nspdk
 recipes/dreamtools
@@ -724,7 +690,6 @@ recipes/sc3-scripts
 recipes/riboseqc
 
 # Some UnsatisfiableError
-recipes/maaslin2
 recipes/music-deconvolution
 
 # Bulk times out while solving environment
@@ -796,7 +761,6 @@ recipes/cesm
 recipes/minnow
 recipes/quip
 recipes/conterminator
-recipes/groot
 recipes/mantis
 recipes/apoc
 recipes/quorum
@@ -824,13 +788,10 @@ recipes/ucsc-autodtd
 recipes/ucsc-autosql
 recipes/ucsc-autoxml
 recipes/ucsc-avecols
-recipes/ucsc-axtchain
 recipes/ucsc-axtsort
 recipes/ucsc-axtswap
 recipes/ucsc-axttomaf
-recipes/ucsc-axttopsl
 recipes/ucsc-bamtopsl
-recipes/ucsc-bedclip
 recipes/ucsc-bedcommonregions
 recipes/ucsc-bedcoverage
 recipes/ucsc-bedextendranges
@@ -861,13 +822,10 @@ recipes/ucsc-bigwigmerge
 recipes/ucsc-blasttopsl
 recipes/ucsc-catdir
 recipes/ucsc-catuncomment
-recipes/ucsc-chainantirepeat
 recipes/ucsc-chainbridge
 recipes/ucsc-chainfilter
-recipes/ucsc-chainmergesort
 recipes/ucsc-chainnet
 recipes/ucsc-chainprenet
-recipes/ucsc-chainsort
 recipes/ucsc-chainsplit
 recipes/ucsc-chainstitchid
 recipes/ucsc-chainswap
@@ -903,7 +861,6 @@ recipes/ucsc-fapolyasizes
 recipes/ucsc-farandomize
 recipes/ucsc-farc
 recipes/ucsc-fasize
-recipes/ucsc-fasomerecords
 recipes/ucsc-fasplit
 recipes/ucsc-fastqstatsandsubsample
 recipes/ucsc-fastqtofa
@@ -1076,33 +1033,25 @@ recipes/sweepfinder2
 
 # syntax error in configure script
 recipes/kat
-recipes/kmer-jellyfish
 
-# unicode error when packaging license file
-recipes/mapseq
 
 # permission error
 recipes/perl-gd
 
-# source download not possible due to invalid https certificates
-recipes/last
-
 # sha mismatch when downloading source
 recipes/fmlrc2
 
 # tries to download zlib itself, which fails
 recipes/d4binding
 
-# maturin build fails
-recipes/taxonomy
-
-# from numba.np.ufunc import _internal
-# SystemError: initialization of _internal failed without raising an exception
-recipes/bbknn
-recipes/gubbins
-
 # no matching package named `quickersort` found
 recipes/mudskipper
 
 # md5 mismatch when downloading source
 recipes/komb
+
+# duplicate recipe
+recipes/treeqmc
+
+# migrated to conda-forge to be windows-friendly
+recipes/pygenomeviz
diff --git a/recipes/3seq/meta.yaml b/recipes/3seq/meta.yaml
index fc3d68b5e7018..00113808e3473 100644
--- a/recipes/3seq/meta.yaml
+++ b/recipes/3seq/meta.yaml
@@ -7,7 +7,9 @@ package:
   version: {{ version }}
 
 build:
-  number: 3
+  number: 4
+  run_exports:
+    - {{ pin_subpackage("3seq", max_pin="x") }}  
 
 source:
   url: https://gitlab.com/lamhm/{{ name|lower }}/-/archive/v{{ version }}/3seq-v{{ version }}.tar.gz
@@ -28,6 +30,10 @@ test:
 
 about:
   home: https://mol.ax/software/3seq/
-  license: CC BY-NC-SA 4.0
+  license: CC-BY-NC-SA-4.0
   license_file: LICENSE.md
   summary: '3SEQ tests all sequence triplets in an alignment for a mosaic recombination signal.'
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/aacon/aacon.sh b/recipes/aacon/aacon.sh
new file mode 100644
index 0000000000000..e69d47183a5e0
--- /dev/null
+++ b/recipes/aacon/aacon.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+set -e
+
+JAR_NAME="compbio-conservation.jar"
+
+if [ -x "$JAVA_HOME/bin/java" ]; then
+  JAVA=$JAVA_HOME/bin/java
+else
+  JAVA=$(which java)
+fi
+$JAVA -jar "$(dirname $(readlink -f "$0"))/$JAR_NAME" "$@"
diff --git a/recipes/aacon/build.sh b/recipes/aacon/build.sh
new file mode 100644
index 0000000000000..df55624091e03
--- /dev/null
+++ b/recipes/aacon/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+set -eu
+
+OUTDIR=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
+mkdir -p $OUTDIR
+mkdir -p $PREFIX/bin
+
+cp $SRC_DIR/compbio-conservation-$PKG_VERSION.jar $OUTDIR/compbio-conservation.jar
+cp $RECIPE_DIR/aacon.sh $OUTDIR/aacon
+ln -s $OUTDIR/aacon $PREFIX/bin/aacon
+chmod +x $PREFIX/bin/aacon
diff --git a/recipes/aacon/meta.yaml b/recipes/aacon/meta.yaml
new file mode 100644
index 0000000000000..ab2a510cd4664
--- /dev/null
+++ b/recipes/aacon/meta.yaml
@@ -0,0 +1,49 @@
+{% set version = "1.1" %}
+{% set sha256sum = "8dd97c70d46d0f8cf6ca79f0cc7641e629db2ab3fec30bd6dbbf9de8c0607145" %}
+
+package:
+  name: aacon
+  version: {{ version }}
+
+build:
+  number: 0
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage('aacon', max_pin="x") }}
+
+source:
+  url: https://github.com/bartongroup/aacon/releases/download/v{{ version }}/compbio-conservation-{{ version }}.jar
+  sha256: {{ sha256sum }}
+
+requirements:
+  run:
+    - openjdk >=8
+
+test:
+  commands:
+    - aacon --help
+
+about:
+  home: https://www.compbio.dundee.ac.uk/aacon/
+  dev_url: https://github.com/bartongroup/aacon
+  license: Apache-2.0
+  summary: "AACon: A Fast Amino Acid Conservation Calculation Service"
+  description:
+    AACon is a set of tools implementing 17 different conservation scores
+    reviewed by Valdar as well as the more complex SMERFS algorithm for
+    predicting protein functional sites. AACon has been written with efficiency
+    in mind and takes less than a second to calculate conservation by all 18
+    methods for an alignment of 500 sequences 350 residues long on a single CPU.
+    AACon exploits parallelism for the more demanding methods and to allow
+    multiple methods to run simultaneously. The parallel code gives close to
+    linear speedup with the number of processors, thus making it suitable for
+    server applications or other demanding environments.
+
+extra:
+  notes:
+    AACon is a Java program that comes with a custom wrapper shell script.
+    The shell wrapper is called "aacon" and is present on $PATH by default.
+    The Java program is executed with java specified by the $JAVA_HOME
+    variable. Otherwise, a "java" program from the current environment is used.
+  identifiers:
+    - biotools:aacon
diff --git a/recipes/abacas/meta.yaml b/recipes/abacas/meta.yaml
index 9ce4d033664dd..2373004ce8222 100644
--- a/recipes/abacas/meta.yaml
+++ b/recipes/abacas/meta.yaml
@@ -13,7 +13,9 @@ source:
     - patches/path.patch
 
 build:
-  number: 2
+  number: 3
+  run_exports:
+    - {{ pin_subpackage("abacas", max_pin="x") }}  
   noarch: generic
 
 requirements:
diff --git a/recipes/abawaca/meta.yaml b/recipes/abawaca/meta.yaml
index 8e93f86df7f49..22c0eb47290e3 100644
--- a/recipes/abawaca/meta.yaml
+++ b/recipes/abawaca/meta.yaml
@@ -11,7 +11,9 @@ source:
     - 0001-Use-CXX-and-flags.patch
 
 build:
-  number: 6
+  number: 7
+  run_exports:
+    - {{ pin_subpackage("abawaca", max_pin="x") }}
 
 requirements:
   build:
@@ -34,3 +36,5 @@ extra:
     - keuv-grvl
   identifiers:
     - doi:10.1038/nature14486
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/abismal/build.sh b/recipes/abismal/build.sh
index 9b16c20f01c71..66d0cf72332e6 100644
--- a/recipes/abismal/build.sh
+++ b/recipes/abismal/build.sh
@@ -1,4 +1,4 @@
 #!/bin/bash
 ./configure --prefix=$PREFIX
-make
+make CXXFLAGS="-O3 -D_LIBCPP_DISABLE_AVAILABILITY"
 make install
diff --git a/recipes/abismal/meta.yaml b/recipes/abismal/meta.yaml
index 2746e6d654c8a..28deeef92addb 100644
--- a/recipes/abismal/meta.yaml
+++ b/recipes/abismal/meta.yaml
@@ -1,15 +1,19 @@
-{% set version = "3.1.1" %}
+{% set version = "3.2.2" %}
 
 package:
   name: abismal
   version: {{ version }}
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    # abismal is currently not intended to be stable between minor versions (x.x).
+    - {{ pin_subpackage('abismal', max_pin="x.x") }}
+
 
 source:
   url: https://github.com/smithlabcode/abismal/releases/download/v{{ version }}/abismal-{{ version }}.tar.gz
-  sha256: 188076f874f5730b4f52e6c1804075f3b9d7b087a02412dfb456aa9ab2b4ae84
+  sha256: c7014da2e97e8821f4d1fca4f0618dcf5433e26db7e1cae5b6efa937da5d2ff2
 
 requirements:
   build:
@@ -20,9 +24,9 @@ requirements:
     - llvm-openmp  # [osx]
     - libgomp      # [linux]
   host:
-    - zlib
+    - htslib
   run:
-    - zlib
+    - htslib
 
 about:
   home: https://github.com/smithlabcode/abismal
diff --git a/recipes/abpoa/meta.yaml b/recipes/abpoa/meta.yaml
index 8f056ed0430dc..e0cbaba96a5cd 100644
--- a/recipes/abpoa/meta.yaml
+++ b/recipes/abpoa/meta.yaml
@@ -1,17 +1,18 @@
-{% set version = "1.4.1" %}
-{% set program = "abpoa" %}
-{% set PROGRAM = "abPOA" %}
+{% set version = "1.5.1" %}
+{% set name = "abPOA" %}
 
 package:
-  name: abpoa
+  name: {{ name | lower }}
   version: {{ version }}
 
 source:
-  url: https://github.com/yangao07/{{ PROGRAM }}/releases/download/v{{ version }}/{{ PROGRAM }}-v{{ version }}.tar.gz
-  sha256: 54b1f5cfd94fb5894e189d9e099f8158051411bcbcc9ba2d77478cfb9221dde1
+  url: https://github.com/yangao07/{{ name }}/releases/download/v{{ version }}/{{ name }}-v{{ version }}.tar.gz
+  sha256: f0e1b41b1c9e18ecd2096df9b60ad053260ec773d70eecb307b02cca0efab89d
 
 build:
-  number: 4
+  number: 1
+  run_exports:
+    - {{ pin_subpackage(name | lower, max_pin="x") }}
 
 requirements:
   build:
@@ -22,10 +23,15 @@ requirements:
 
 test:
   commands:
-    - {{ program }} --version | grep {{ version }}
+    - {{ name | lower }} --version | grep {{ version }}
 
 about:
-  home: https://github.com/yangao07/{{ PROGRAM }}
-  license: GPL
+  home: https://github.com/yangao07/{{ name }}
+  license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary: 'abPOA: fast SIMD-based partial order alignment using adaptive band'
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/abra2/meta.yaml b/recipes/abra2/meta.yaml
index 1d5adf33ab6ae..342af9bad048e 100644
--- a/recipes/abra2/meta.yaml
+++ b/recipes/abra2/meta.yaml
@@ -10,21 +10,30 @@ source:
   sha256: edb35fb6ff318239353a573d1abad148073b8ac0bb2cd44a18e561abe08aef32
 
 build:
-  number: 2
+  number: 3
   skip: true  # [osx]
+  run_exports:
+    - pin_subpackage(name, max_pin="x")
 
 requirements:
   build:
     - maven
     - make
     - {{ compiler('cxx') }}
+  host:
+    - zlib
   run:
     - openjdk >=8,<10
     - coreutils
+    - zlib
 
 test:
   commands:
-     - 'abra2 2>&1 | grep "Abra version"'
+     - 'abra2 2>&1 | grep "Abra version" || (abra2 && exit 1)'
+
+extra:
+  additional-platforms:
+    - linux-aarch64
 
 about:
   home: https://github.com/mozack/abra2
diff --git a/recipes/abricate/meta.yaml b/recipes/abricate/meta.yaml
index 99fefc82f95b7..f2370a576149a 100644
--- a/recipes/abricate/meta.yaml
+++ b/recipes/abricate/meta.yaml
@@ -8,8 +8,10 @@ package:
   version: {{ version }}
 
 build:
-  number: 1
+  number: 2
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 source:
   url: https://github.com/{{ user }}/{{ name }}/archive/v{{ version }}.tar.gz
@@ -32,6 +34,7 @@ requirements:
     - perl-path-tiny
     - perl-list-moreutils
     - perl-json
+    - perl-lwp-protocol-https
     - perl-lwp-simple
     - blast >=2.7
     - zlib
diff --git a/recipes/abritamr/meta.yaml b/recipes/abritamr/meta.yaml
index 6fbc267b65ae6..d632123115b80 100644
--- a/recipes/abritamr/meta.yaml
+++ b/recipes/abritamr/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "abritamr" %}
-{% set version = "1.0.14" %}
-{% set sha256 = "22600b8cf37c1c4cf5dc5b81f4774907e58ba874a5de968f169101d6829fe6e3" %}
+{% set version = "1.0.17" %}
+{% set sha256 = "091ddb77afb2a37b4955312887d2ff32669ddc0512b38ab51896139d3c897970" %}
 
 package:
   name: "{{ name|lower }}"
@@ -11,22 +11,28 @@ source:
   sha256: "{{ sha256 }}"
 
 build:
-  number: 1
+  number: 2
   noarch: python
   entry_points:
     - abritamr=abritamr.abritamr:main
-  script: "{{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv"
+  script: "{{ PYTHON }} -m pip install . --no-build-isolation --no-deps -vvv"
+  run_exports:
+    - {{ pin_subpackage('abritamr', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - python =>3.9
+    - python >=3.9
   run:
-    - pandas =>1.4
+    - python >=3.9
+    - pandas
     - xlsxwriter
-    - ncbi-amrfinderplus =3.10.42
-    - blast 
-    - hmmer 
+    # Please review ncbi-amrfinderplus pinning every release
+    # The version should be pinned to the database version used by abritamr
+    # Please see the "changes.txt" file in https://github.com/MDU-PHL/abritamr/blob/master/abritamr/db/amrfinderplus/data/<DATABASE_VERSION>/changes.txt
+    - ncbi-amrfinderplus =3.12.8
+    - blast
+    - hmmer
     - libcurl
     - parallel
 
@@ -44,9 +50,11 @@ about:
   license: GPL-3.0-only
   license_family: GPL3
   summary: "Running AMRFinderPlus for MDU"
-  dev_url: https://github.com/MDU-PHL/abritamr 
+  dev_url: https://github.com/MDU-PHL/abritamr
 
 extra:
   recipe-maintainers:
     - kristyhoran
     - andergs
+  identifiers:
+    - biotools:abritamr
diff --git a/recipes/abromics_galaxy_json_extractor/meta.yaml b/recipes/abromics_galaxy_json_extractor/meta.yaml
index ff9415a643958..ffb7d367e33e6 100644
--- a/recipes/abromics_galaxy_json_extractor/meta.yaml
+++ b/recipes/abromics_galaxy_json_extractor/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.6" %}
+{% set version = "0.8.3.6" %}
 
 context: {}
 
@@ -8,7 +8,7 @@ package:
 
 source:
   url: https://gitlab.com/ifb-elixirfr/abromics/abromics-galaxy-json-extractor/-/archive/{{ version }}/abromics-galaxy-json-extractor-{{ version }}.tar.gz
-  sha256:  '8ba4bde77817fa323e279a6f2e8187e364259a7e69b92c11f02ba5332eeeb950'
+  sha256:  '364997088a29c30cdc45d2c66af40a3d6b8e3398efe1d7eb242d31b0e68abd77'
 
 build:
   noarch: python
@@ -16,6 +16,8 @@ build:
   script: python -m pip install --no-deps --ignore-installed .
   entry_points:
     - abromics_extract = abromics_galaxy_json_extractor.main:main
+  run_exports:
+    - {{ pin_subpackage('abromics_galaxy_json_extractor', max_pin='x.x') }}
 
 requirements:
   host:
diff --git a/recipes/abundancebin/meta.yaml b/recipes/abundancebin/meta.yaml
index d01609dd35e02..1fc298ebc42e5 100644
--- a/recipes/abundancebin/meta.yaml
+++ b/recipes/abundancebin/meta.yaml
@@ -14,7 +14,9 @@ source:
     - 0001-Use-CXX-and-flags.patch
 
 build:
-  number: 6
+  number: 7
+  run_exports:
+    - {{ pin_subpackage("abundancebin", max_pin="x.x.x") }}  
   skip: True  # [osx]
 
 requirements:
@@ -45,3 +47,5 @@ extra:
     - keuv-grvl
   identifiers:
     - doi:10.1007/978-3-642-12683-3_35
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/ac/meta.yaml b/recipes/ac/meta.yaml
index 3b66857bde87b..17b4fbc7a327c 100644
--- a/recipes/ac/meta.yaml
+++ b/recipes/ac/meta.yaml
@@ -7,7 +7,9 @@ package:
 build:
   # Passes some invalid flags for clang
   skip: True  # [osx]
-  number: 4
+  number: 5
+  run_exports:
+    - {{ pin_subpackage("ac", max_pin="x.x") }}
 
 source:
   url: https://github.com/cobilab/ac/archive/v{{ version }}.tar.gz
@@ -30,3 +32,7 @@ about:
   license_file: LICENSE
   license_family: GPL
   summary: A lossless compression tool for Amino Acid sequences
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/aci/meta.yaml b/recipes/aci/meta.yaml
new file mode 100644
index 0000000000000..8e8f688c489d8
--- /dev/null
+++ b/recipes/aci/meta.yaml
@@ -0,0 +1,49 @@
+{% set name = "aci" %}
+{% set repo = "amplicon_coverage_inspector" %}
+{% set version = "1.4.20240116" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ repo[0] }}/{{ repo }}/{{ repo }}-{{ version }}.tar.gz
+  sha256: 06cf71bde19ecb8ac760c14548b3cdb24f99755da36d53daeea62cf053f5b12c
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - aci=aci.aci:main
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('aci', max_pin='x') }}
+
+requirements:
+  host:
+    - python >=3.8,<4.0
+    - pip
+  run:
+    - python >=3.8,<4.0
+    - matplotlib-base >=3.8.2
+    - numpy >=1.26.2
+    - pandas >=2.1.4
+    - pysam >=0.22.0
+
+test:
+  imports:
+    - aci
+  commands:
+    - aci --help
+
+about:
+  home: https://github.com/erinyoung/ACI
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: Visualizes coverage for amplicons
+  doc_url: https://github.com/erinyoung/ACI/blob/main/README.md
+
+extra:
+  recipe-maintainers:
+    - erinyoung
diff --git a/recipes/actc/meta.yaml b/recipes/actc/meta.yaml
index fbfd37809338b..88f37c2d8dfe2 100644
--- a/recipes/actc/meta.yaml
+++ b/recipes/actc/meta.yaml
@@ -1,13 +1,13 @@
 {% set name = "actc" %}
-{% set version = "0.2.0" %}
-{% set sha256 = "44e94104f3a6f6868ce40fcda6d8c1de44e23cfa5bca87690b3e2ab65e31eb13" %}
+{% set version = "0.6.0" %}
+{% set sha256 = "8b19414ec185b30fa1362c4aec97655a9392b98a3322a9371bdc3fc3b31a63bf" %}
 
 package:
   name: {{ name }}
   version: {{ version }}
 
 source:
-  - url: https://github.com/PacificBiosciences/actc/releases/download/{{ version }}/actc
+  - url: https://github.com/PacificBiosciences/actc/releases/download/v{{ version }}/actc
     sha256: {{ sha256 }}
 
 about:
@@ -25,6 +25,8 @@ extra:
 build:
   number: 0
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 test:
   commands:
diff --git a/recipes/adam/meta.yaml b/recipes/adam/meta.yaml
index c29df2abaf583..51700f7519ec5 100644
--- a/recipes/adam/meta.yaml
+++ b/recipes/adam/meta.yaml
@@ -1,4 +1,4 @@
-{% set version="1.0" %}
+{% set version="1.0.1" %}
 
 package:
   name: adam
@@ -6,7 +6,7 @@ package:
 
 source:
   url: https://search.maven.org/remotecontent?filepath=org/bdgenomics/adam/adam-distribution-spark3_2.12/{{ version }}/adam-distribution-spark3_2.12-{{ version }}-bin.tar.gz
-  sha256: 1c1d91ccb42d2faaefb075f93a11bfb5a8c6dd575c7f01d21842a8957204f705
+  sha256: cd6259148a2d9d8bf10549cedd09fe5b12d9f34a25e80a4025f96d60e50be807
   patches:
     - adam-shell.patch
     - adam-submit.patch
@@ -14,6 +14,8 @@ source:
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('adam', max_pin="1") }}
 
 requirements:
   run:
diff --git a/recipes/adapterremoval/meta.yaml b/recipes/adapterremoval/meta.yaml
index b6c2fb86ec426..e916bf3a3bd45 100644
--- a/recipes/adapterremoval/meta.yaml
+++ b/recipes/adapterremoval/meta.yaml
@@ -10,7 +10,9 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 2
+  number: 3
+  run_exports:
+    - {{ pin_subpackage("adapterremoval", max_pin="x") }}  
 
 requirements:
   build:
@@ -34,3 +36,7 @@ about:
   license: GPL3
   license_file: LICENSE
   summary: The AdapterRemoval v2 tool for merging and clipping reads.
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/addrg/meta.yaml b/recipes/addrg/meta.yaml
index 9a92b45beccbd..6b55770d98737 100644
--- a/recipes/addrg/meta.yaml
+++ b/recipes/addrg/meta.yaml
@@ -6,7 +6,9 @@ package:
   version: {{ version }}
 
 build:
-  number: 11
+  number: 12
+  run_exports:
+    - {{ pin_subpackage("addrg", max_pin="x.x") }}
 
 source:
   url: https://github.com/holtgrewe/addrg/archive/v{{ version }}.tar.gz
@@ -17,6 +19,7 @@ requirements:
     - {{ compiler('c') }}
   host:
     - htslib
+    - zlib
   run:
     - htslib
 
@@ -28,3 +31,7 @@ about:
   home: https://github.com/holtgrewe/addrg
   license: MIT
   summary: Add read group to BAM files
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/agat/meta.yaml b/recipes/agat/meta.yaml
index 99c23db5c7482..a91fde31f4758 100755
--- a/recipes/agat/meta.yaml
+++ b/recipes/agat/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "AGAT" %}
-{% set version = "1.2.0" %}
-{% set sha256 = "c812e4b4ca1d27b5b8804025fa5a33f56e9b542948b44885662b2cbb98d06055" %}
+{% set version = "1.4.0" %}
+{% set sha256 = "d5e30db44b5d05ed51c606a823894c01c85c1ed85580148ad5473cb2f2b2ac77" %}
 
 package:
   name: "{{ name|lower }}"
@@ -13,6 +13,8 @@ source:
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage("agat", max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/agc/meta.yaml b/recipes/agc/meta.yaml
index ad87d0fd1beb9..ea93af4029d36 100644
--- a/recipes/agc/meta.yaml
+++ b/recipes/agc/meta.yaml
@@ -1,20 +1,26 @@
-{% set version = "3.0" %}
-{% set system = "linux"%}  # [linux]
-{% set system = "mac"%}  # [osx]
-{% set sha256 = "3ee3245e556221d246f9afe5d9ad86888f4eb5aea6b10f621241c3170ef8835e" %}  # [linux]
-{% set sha256 = "3d68b6b76948b6d9a36c4e848e37969eda6ae0ec1abace4ca61a7cc585dcdabf" %}  # [osx]
+{% set version = "3.1" %}
+
 package:
   name: agc
   version: {{ version }}
+
 build:
   number: 0
   script: "mkdir -p ${PREFIX}/bin; cp agc ${PREFIX}/bin"
+  run_exports:
+    - {{ pin_subpackage('agc', max_pin="x") }}
 source:
-  url: https://github.com/refresh-bio/agc/releases/download/v{{ version }}/agc-{{ version }}_x64-{{ system }}.tar.gz
-  sha256: {{ sha256 }}
+  - url: https://github.com/refresh-bio/agc/releases/download/v{{ version }}/agc-{{ version }}_arm_linux.tar.gz # [aarch64]
+    sha256: 5fee3ccbb2691d82a877987e204c5946dbdbe40b9603af5d2421cb8506577534                                           # [aarch64]
+  - url: https://github.com/refresh-bio/agc/releases/download/v{{ version }}/agc-{{ version }}_x64_linux.tar.gz   # [linux64]
+    sha256: 4868dd45c1ed31a7f36bcbc536174249de27b87ec83858d22b128cbec8deef53                                           # [linux64]
+  - url: https://github.com/refresh-bio/agc/releases/download/v{{ version }}/agc-{{ version }}_x64_mac.tar.gz       # [osx and x86_64]
+    sha256: 0ef911e6bb8df791593ee6e89b5bddbf82b5823684955d249d6a67a39e6d0d4e                                           # [osx and x86_64]
+  - url: https://github.com/refresh-bio/agc/releases/download/v{{ version }}/agc-{{ version }}_m1_mac.tar.gz       # [osx and arm64]
+    sha256: ff8cc5dd4c5825a41e042567a93e9e01ef43fc91624c983640a29fd3c7ac03e4                                           # [osx and arm64]
 requirements:
   build:
-  run:
+  run: 
 about:
   home: https://github.com/refresh-bio/agc
   summary: "Assembled Genomes Compressor (AGC) is a tool designed to compress collections of de-novo assembled genomes. It can be used for various types of datasets: short genomes (viruses) as well as long (humans)."
@@ -23,6 +29,8 @@ test:
   commands:
     - agc
 extra:
+  additional-platforms:
+    - linux-aarch64
   skip-lints:
     - should_be_noarch_generic
     - should_not_be_noarch_source
diff --git a/recipes/age-metasv/meta.yaml b/recipes/age-metasv/meta.yaml
index 2eefecbaee314..212bb76c1a0d5 100644
--- a/recipes/age-metasv/meta.yaml
+++ b/recipes/age-metasv/meta.yaml
@@ -10,7 +10,9 @@ source:
 
 build:
   skip: True # [osx]
-  number: 7
+  number: 8
+  run_exports:
+    - {{ pin_subpackage("age-metasv", max_pin="x.x.x") }}  
 
 requirements:
   build:
@@ -18,6 +20,7 @@ requirements:
     - {{ compiler('cxx') }}
     - llvm-openmp  # [osx]
     - libgomp      # [linux]
+    - libstdcxx-ng >=12
   host:
   run:
 
@@ -29,3 +32,7 @@ about:
   home: https://github.com/marghoob/AGE/tree/simple-parseable-output
   license: CCPL (Creative Commons Public License)
   summary: optimal alignment of sequences with structural variants (SVs), modifiied for MetaSV integration
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/agfusion/meta.yaml b/recipes/agfusion/meta.yaml
index 12a32f4f226dc..8aa1ba254810a 100644
--- a/recipes/agfusion/meta.yaml
+++ b/recipes/agfusion/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "1.252" %}
-{% set sha256 = "5ac8d27b1e8ece014b8b8138615712ffd3c2f6602dc854d199335986559b7946" %}
+{% set version = "1.4.1" %}
+{% set sha256 = "fd04591d764deeff69978f9d495c3baf854ccfba27366aa0ae4859ad85ca2c60" %}
 
 package:
   name: agfusion
@@ -11,8 +11,10 @@ source:
 
 build:
   noarch: python
-  number: 1
+  number: 0
   script: python -m pip install --no-deps --ignore-installed .
+  run_exports:
+    - {{ pin_subpackage("agfusion", max_pin="x.x") }}
 
 requirements:
   host:
@@ -21,9 +23,9 @@ requirements:
     - setuptools
   run:
     - python
-    - matplotlib >=1.5.0
-    - pandas >=0.18.1
-    - biopython >=1.67
+    - matplotlib-base >=3.6.1
+    - pandas >=1.5.1
+    - biopython >=1.79
     - future >=0.16.0
     - pyensembl >=1.1.0
     - nose2 >=0.6.5
diff --git a/recipes/airr/meta.yaml b/recipes/airr/meta.yaml
index 764714d8b160e..88f53a150f668 100644
--- a/recipes/airr/meta.yaml
+++ b/recipes/airr/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "airr" %}
-{% set version = "1.4.1" %}
+{% set version = "1.5.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,13 +7,15 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 52276f977b31694751f7cc2d56d50843ac7b363883e7daac60130a5abe839ed9
+  sha256: febc0a881bf46b1a9c29ac6a7089dd733ff9120d114585e75dede26403f68d42
 
 build:
   number: 0
   noarch: python
   entry_points:
     - airr-tools=airr.tools:main
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv "
 
 requirements:
diff --git a/recipes/akt/build.sh b/recipes/akt/build.sh
index 54a4de419bbc8..4eca9aec4baa4 100644
--- a/recipes/akt/build.sh
+++ b/recipes/akt/build.sh
@@ -1,4 +1,8 @@
 #!/bin/bash
+if [ `uname -m` == "aarch64" ]; then
+sed -i 's/\-mpopcnt//g' Makefile
+fi
+
 make \
     CC="${CC} ${CFLAGS} ${CPPFLAGS} ${LDFLAGS}" \
     CXX="${CXX} ${CXXFLAGS} ${CPPFLAGS} ${LDFLAGS}"
diff --git a/recipes/akt/meta.yaml b/recipes/akt/meta.yaml
index 166419b343c28..fe1cfb1e46ba5 100644
--- a/recipes/akt/meta.yaml
+++ b/recipes/akt/meta.yaml
@@ -10,7 +10,9 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 4
+  number: 5
+  run_exports:
+    - {{ pin_subpackage("akt", max_pin="x.x.x") }}  
 
 requirements:
   build:
@@ -38,3 +40,5 @@ about:
 extra:
   identifiers:
     - doi:10.1093/bioinformatics/btw576
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/alcor/meta.yaml b/recipes/alcor/meta.yaml
index 538f6076de517..29a3cfed328af 100644
--- a/recipes/alcor/meta.yaml
+++ b/recipes/alcor/meta.yaml
@@ -10,7 +10,9 @@ package:
 build:
    # Passes some invalid flags for clang
    skip: True  # [osx]
-   number: 2
+   number: 3
+   run_exports:
+     - {{ pin_subpackage("alcor", max_pin="x.x") }}  
 
 source:
   url: https://github.com/cobilab/alcor/archive/v{{ version }}.tar.gz
@@ -37,3 +39,7 @@ about:
   license_file: LICENSE
   license_family: GPL
   summary: Software for alignment-free simulation, mapping, and visualization of low-complexity regions in FASTA data.
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/ale-core/build.sh b/recipes/ale-core/build.sh
new file mode 100644
index 0000000000000..4dea947999681
--- /dev/null
+++ b/recipes/ale-core/build.sh
@@ -0,0 +1,9 @@
+#!/bin/bash
+
+export C_INCLUDE_PATH=${PREFIX}/include
+export LIBRARY_PATH=${PREFIX}/lib
+make CC=$CC
+
+mkdir -p $PREFIX/bin
+cp src/ALE $PREFIX/bin
+cp src/synthReadGen $PREFIX/bin
diff --git a/recipes/ale-core/meta.yaml b/recipes/ale-core/meta.yaml
new file mode 100644
index 0000000000000..7ce9aa4e5e075
--- /dev/null
+++ b/recipes/ale-core/meta.yaml
@@ -0,0 +1,38 @@
+{% set version = "20220503" %}
+{% set sha256 = "b04a047fd3b11c0e84718bea20fe7d03f50f80a542d3b18e66c5b95983b9e559" %}
+
+package:
+  name: ale-core
+  version: '{{ version }}'
+
+source:
+  url: https://github.com/sc932/ALE/archive/{{ version }}.tar.gz
+  sha256: '{{ sha256 }}'
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("ale-core", max_pin=None) }}
+
+requirements:
+  build:
+    - make
+    - '{{ compiler("c") }}'
+  host:
+    - samtools
+    - zlib
+  run:
+    - samtools
+    - zlib
+
+test:
+  commands:
+    - ALE --help
+    - synthReadGen --help
+
+about:
+  home: https://github.com/sc932/ALE
+  license: NCSA
+  summary: 'ALE: Assembly Likelihood Estimator. Core C implemented  scoring programs only without supplementary plotting scripts.'
+  description: |
+    This package is designed to hold the core scoring functionality of ALE without the 10+ year old supplementary python plotting scripts 
diff --git a/recipes/aletsch/meta.yaml b/recipes/aletsch/meta.yaml
index d456e3db645dd..1abc848d3520a 100644
--- a/recipes/aletsch/meta.yaml
+++ b/recipes/aletsch/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "aletsch" %}
-{% set version = "1.0.3" %}
+{% set version = "1.1.1" %}
 
 package:
   name: "{{ name }}"
@@ -7,10 +7,12 @@ package:
 
 source:
   url: "https://github.com/Shao-Group/aletsch/releases/download/v{{ version }}/aletsch-{{ version }}.tar.gz"
-  sha256: "1eae28ae32f40097320ef14c8dd65e30319cae5f1cb11533905b4330b5b76478"
+  sha256: "3537e90213baa7ea132b1648f4687780537999f3796711cf7398f9168d72f027"
 
 build:
-  number: 6
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('aletsch', max_pin="x") }}
 
 requirements:
   build:
@@ -32,7 +34,7 @@ about:
   home: "https://github.com/Shao-Group/aletsch"
   license: BSD-3-Clause
   license_file: LICENSE
-  summary: "Aletsch is a scalable, accurate, and versatile assembler for multiple RNA-seq samples."
+  summary: "Aletsch is an accurate, versatile assembler for multiple RNA-seq samples."
 
 extra:
   recipe-maintainers:
diff --git a/recipes/alevin-fry/meta.yaml b/recipes/alevin-fry/meta.yaml
index 2b773c2e1497a..446695091e5e6 100644
--- a/recipes/alevin-fry/meta.yaml
+++ b/recipes/alevin-fry/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.8.2" %}
+{% set version = "0.9.0" %}
 
 package:
   name: alevin-fry
@@ -6,14 +6,16 @@ package:
 
 build:
   number: 0
-
+  run_exports:
+    - {{ pin_subpackage("alevin-fry", max_pin="x.x") }}
+    
 source:
   url: https://github.com/COMBINE-lab/alevin-fry/archive/v{{ version }}.tar.gz
-  sha256: 7feaa5b59c6537eee9d1a2a07797f151ba6a50955a969fa1807dcb7aeb357ab1
+  sha256: 80fa964ba998c21dfd1190629015924e53d633be64cb8c8ee105bd7e3a33ac21
 
 requirements:
   build:
-    - rust >=1.60  
+    - {{ compiler('rust') }} 
     - cmake
     - autoconf
     - make
diff --git a/recipes/alfred/build.sh b/recipes/alfred/build.sh
index dc2400afabae2..89d206cac27f5 100644
--- a/recipes/alfred/build.sh
+++ b/recipes/alfred/build.sh
@@ -1,3 +1,3 @@
 #!/bin/sh
 
-CXXFLAGS="${CXXFLAGS} -D__STDC_FORMAT_MACROS" make CXX="${CXX}" prefix="${PREFIX}" install
+CXXFLAGS="${CXXFLAGS} -D__STDC_FORMAT_MACROS" make -j${CPU_COUNT} CXX="${CXX}" prefix="${PREFIX}" install
diff --git a/recipes/alfred/meta.yaml b/recipes/alfred/meta.yaml
index 674c9fff68aee..8316353573dbf 100644
--- a/recipes/alfred/meta.yaml
+++ b/recipes/alfred/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.2.7" %}
-{% set sha256 = "fa2b9bc47e1f716471684b0467b35c5f1b6f1b36ffd35608d13f4d1f138d6fc1" %}
+{% set version = "0.3.1" %}
+{% set sha256 = "6a84eef8cb737e856915c88b340304a22e5cc5013f89d3756026f93720f3c8cb" %}
 
 package:
   name: alfred
@@ -10,7 +10,9 @@ source:
   sha256: '{{ sha256 }}'
 
 build:
-  number: 2
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('alfred', max_pin="x.x") }}
 
 requirements:
   build:
@@ -39,3 +41,7 @@ about:
   license_family: BSD
   license_file: LICENSE
   summary: BAM alignment statistics, feature counting and feature annotation
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/aligncov/meta.yaml b/recipes/aligncov/meta.yaml
new file mode 100644
index 0000000000000..ae6a09dcedcc1
--- /dev/null
+++ b/recipes/aligncov/meta.yaml
@@ -0,0 +1,48 @@
+{% set name = "aligncov" %}
+{% set version = "0.0.2" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: 47ded440daebad7bdfa1e5e3a75925f3bf6e730e7de5b3f50060bf35e5ad0f43
+
+build:
+  number: 0
+  entry_points:
+    - aligncov=aligncov.cli:main
+  script: "{{ PYTHON }} -m pip install . -vv"
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage('aligncov', max_pin="x") }}
+
+requirements:
+  host:
+    - pandas >=1.0.0
+    - pip
+    - python
+  run:
+    - pandas >=1.0.0
+    - python
+    - samtools >=1.15
+
+test:
+  imports:
+    - aligncov
+  commands:
+    - aligncov --help
+
+about:
+  home: "https://github.com/pcrxn/aligncov"
+  license: MIT
+  license_family: MIT
+  license_file: 
+  summary: "Obtain tidy alignment coverage info from sorted BAM files"
+  doc_url: 
+  dev_url: 
+
+extra:
+  recipe-maintainers:
+    - pcrxn
diff --git a/recipes/alignoth/meta.yaml b/recipes/alignoth/meta.yaml
index 7e267d22627e5..452eea4bb43a6 100644
--- a/recipes/alignoth/meta.yaml
+++ b/recipes/alignoth/meta.yaml
@@ -1,18 +1,20 @@
-{% set version = "0.8.2" %}
+{% set version = "0.12.0" %}
 
 package:
   name: alignoth
   version: {{ version }}
 
 build:
-  number: 2
+  number: 1
   # TODO fails to build on osx with
   # Undefined symbols for architecture x86_64: "_SSLCopyALPNProtocols", referenced from: _sectransp_connect_step2 in libcurl_sys-1f07db570920ba9f.rlib(sectransp.o)
   skip: true  #[osx]
+  run_exports:
+    - {{ pin_subpackage('alignoth', max_pin="x") }}
 
 source:
-  url: https://github.com/koesterlab/alignoth/archive/v{{ version }}.tar.gz
-  sha256: 30ce7dba7b53e4fe0865c224ab72f849bfdd859d4ada897dfb9c1b3fb3b02504
+  url: https://github.com/alignoth/alignoth/archive/v{{ version }}.tar.gz
+  sha256: e430a257f5ab440846756f53a0c618ebec86bd5d6f3627eab1fed11dd68f3b5c
 
 requirements:
   build:
@@ -28,12 +30,13 @@ requirements:
     - libcurl
     - openssl
 
+
 test:
   commands:
     - alignoth --help
 
 about:
-  home: https://github.com/koesterlab/alignoth
+  home: https://alignoth.github.io
   license: MIT
   summary: A tool for creating alignment plots from bam files
 
@@ -41,3 +44,5 @@ extra:
   recipe-maintainers:
     - fxwiegand
     - johanneskoester
+  additional-platforms:  #add aarch64
+    - linux-aarch64
diff --git a/recipes/alignstats/meta.yaml b/recipes/alignstats/meta.yaml
index 009b1ec52d685..645cec41b08ca 100644
--- a/recipes/alignstats/meta.yaml
+++ b/recipes/alignstats/meta.yaml
@@ -10,7 +10,9 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 1
+  number: 2
+  run_exports:
+    - {{ pin_subpackage("alignstats", max_pin="x.x.x") }}  
 
 requirements:
   build:
@@ -33,3 +35,7 @@ about:
   home: https://github.com/jfarek/alignstats
   license: BSD-3-Clause
   summary: Comprehensive alignment, whole-genome coverage, and capture coverage statistics.
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/allegro/build.sh b/recipes/allegro/build.sh
index f8dc625177f65..193897e45693d 100644
--- a/recipes/allegro/build.sh
+++ b/recipes/allegro/build.sh
@@ -1,4 +1,8 @@
 #!/bin/bash
+rm -rf src/config.guess
+rm -rf src/config.sub
+wget "http://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.guess;hb=HEAD" -O src/config.guess
+wget "http://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.sub;hb=HEAD" -O src/config.sub
 ./configure
 make CXXFLAGS="${CXXFLAGS} -std=c++03"
 
diff --git a/recipes/allegro/meta.yaml b/recipes/allegro/meta.yaml
index 72183ae9d3512..8a98f890cce1a 100644
--- a/recipes/allegro/meta.yaml
+++ b/recipes/allegro/meta.yaml
@@ -18,7 +18,9 @@ source:
 
 build:
   skip: True  # [osx]
-  number: 7
+  number: 8
+  run_exports:
+    - {{ pin_subpackage("allegro", max_pin="x.x.x") }}  
 
 requirements:
   build:
@@ -27,6 +29,7 @@ requirements:
   host:
     - zlib
     - patch
+    - wget
   run:
     - zlib
 
@@ -43,3 +46,5 @@ about:
 extra:
   skip-lints:
     - should_not_be_noarch_source
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/allo/meta.yaml b/recipes/allo/meta.yaml
new file mode 100644
index 0000000000000..3fa7b1a6eed24
--- /dev/null
+++ b/recipes/allo/meta.yaml
@@ -0,0 +1,44 @@
+{% set name = "allo" %}
+{% set version = "1.1.1" %} 
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+  
+source:
+  url: https://pypi.io/packages/source/b/bio-{{ name }}/bio_allo-{{ version }}.tar.gz
+  sha256: b72bcbd900965e8b2fbbc17b174b44a8938994a4aeb8d532fb6f6a52b115b69e
+  
+build:
+  run_exports:
+    - {{ pin_subpackage('allo', max_pin="x") }}
+  number: 1
+  noarch: python
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv
+
+requirements:
+  host:
+    - pip
+    - python >=3.10
+  run:
+    - python >=3.10
+    - numpy
+    - joblib
+    - tensorflow >=2.11
+    - pysam
+    
+test:
+  commands:
+    - allo --help
+    
+about:
+  home: "https://github.com/seqcode/allo"
+  license: MIT
+  license_family: MIT
+  license_file: "LICENSE.txt"
+  summary: "Multi-mapped read rescue strategy for gene regulatory analyses"
+  dev_url: "https://github.com/seqcode/allo"
+
+extra:
+  recipe-maintainers:
+    - anmorrissey
diff --git a/recipes/altair-mf/meta.yaml b/recipes/altair-mf/meta.yaml
index 353e78b5929a8..0deed9c024b96 100644
--- a/recipes/altair-mf/meta.yaml
+++ b/recipes/altair-mf/meta.yaml
@@ -10,7 +10,9 @@ package:
 build:
    # Passes some invalid flags for clang
    skip: True  # [osx]
-   number: 2
+   number: 3
+   run_exports:
+    - {{ pin_subpackage("altair-mf", max_pin="x.x.x") }}  
 
 source:
   url: https://github.com/cobilab/altair/archive/v{{ version }}.tar.gz
@@ -37,3 +39,7 @@ about:
   license_file: LICENSE
   license_family: GPL
   summary: Software for alignment-free and spatial-temporal analysis of multi-FASTA data
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/amdirt/meta.yaml b/recipes/amdirt/meta.yaml
index 897c231a4e148..a28aeb665778a 100644
--- a/recipes/amdirt/meta.yaml
+++ b/recipes/amdirt/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "amdirt" %}
-{% set version = "1.4.6" %}
+{% set version = "1.6.0" %}
 
 package:
   name: {{ name|lower }}
@@ -7,7 +7,7 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/AMDirT-{{ version }}.tar.gz
-  sha256: dc099a28c68996ea7e8ca087856598e693fa5f780eec166ee9fcac8780b1f930
+  sha256: 15feb7872d98e73225886a81a6b7b1af0e6a962e9a398d6e0343c31adeb9640c
 
 build:
   entry_points:
@@ -15,6 +15,8 @@ build:
   noarch: python
   script: {{ PYTHON }} -m pip install . -vv
   number: 0
+  run_exports:
+    - {{ pin_subpackage("amdirt", max_pin="x.x") }}
 
 requirements:
   host:
@@ -24,6 +26,7 @@ requirements:
     - click
     - colorlog
     - jsonschema
+    - defusedxml
     - numpy
     - pandas
     - python >=3.9
diff --git a/recipes/aminoextract/meta.yaml b/recipes/aminoextract/meta.yaml
index 860d6b0b28038..6d417148ef62f 100644
--- a/recipes/aminoextract/meta.yaml
+++ b/recipes/aminoextract/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "AminoExtract" %}
-{% set version = "0.2.1" %}
+{% set version = "0.3.1" %}
 
 package:
   name: {{ name|lower }}
@@ -7,15 +7,17 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/AminoExtract-{{ version }}.tar.gz
-  sha256: 7110aed091c9d92828759a9e7dace78f622457a4830528ae8371b996df99581c
+  sha256: a859268e1da5f41e70acd3fa8163ac12843bdaefd2aa12f4a141ce4f1dc5df91
 
 build:
   entry_points:
     - aminoextract = AminoExtract.__main__:main
     - AminoExtract = AminoExtract.__main__:main
   noarch: python
-  script: {{ PYTHON }} -m pip install . -vv
+  script: {{ PYTHON }} -m pip install . -vvv
   number: 0
+  run_exports:
+    - {{ pin_subpackage('aminoextract', max_pin="x") }}
 
 requirements:
   host:
@@ -32,7 +34,6 @@ test:
   imports:
     - AminoExtract
   commands:
-    - pip check
     - aminoextract --help
     - AminoExtract --help
 
@@ -40,6 +41,7 @@ about:
   home: https://pypi.org/project/AminoExtract/
   summary: AminoExtract is an application to extract aminoacid sequences from a fasta file based on a GFF.
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   dev_url: https://github.com/RIVM-bioinformatics/AminoExtract
 
diff --git a/recipes/ampcombi/meta.yaml b/recipes/ampcombi/meta.yaml
index 463325c2d636f..1bb7752d2c957 100644
--- a/recipes/ampcombi/meta.yaml
+++ b/recipes/ampcombi/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "AMPcombi" %}
-{% set version = "0.1.7" %}
+{% set version = "0.2.2" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: a73ab40cc80670f403aa629d1c1d7318ce21cc952618fdc1eba0ef667fae3578
+  sha256: da9a179851a8f2041d05ccd10dd45b58099e84059e2e66a9ee405d1913471b58
 
 build:
   noarch: python
@@ -15,24 +15,27 @@ build:
   entry_points:
     - ampcombi = ampcombi:main
   script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage("ampcombi", max_pin="x.x") }}
 
 requirements:
   host:
     - pandas
     - pip
-    - python >=3.9
+    - python ==3.11
   run:
-    - pandas
+    - pandas ==1.5.2
     - requests
     - parsedatetime
     - subprocess32
-    - biopython
+    - biopython ==1.80
     - backports.tempfile
     - contextlib2
-    - diamond
     - openpyxl
     - jsonschema
-    - python >=3.9
+    - python ==3.11
+    - diamond ==2.0.15
+    - mmseqs2 ==15.6f452
 
 test:
   imports:
diff --git a/recipes/amplicon_coverage_plot/meta.yaml b/recipes/amplicon_coverage_plot/meta.yaml
index a0868b494288c..e870eaaf49531 100644
--- a/recipes/amplicon_coverage_plot/meta.yaml
+++ b/recipes/amplicon_coverage_plot/meta.yaml
@@ -11,8 +11,10 @@ source:
 
 build:
   noarch: python
-  number: 0
+  number: 1
   script: "{{ PYTHON }} -m pip install . --no-deps -vv"
+  run_exports:
+   - {{ pin_subpackage("amplicon_coverage_plot", max_pin="x.x") }}  
 
 requirements:
   host:
diff --git a/recipes/ampliconsuite/build.sh b/recipes/ampliconsuite/build.sh
index 2e0bd4e37c1ec..c2e5e3f353cc0 100644
--- a/recipes/ampliconsuite/build.sh
+++ b/recipes/ampliconsuite/build.sh
@@ -5,9 +5,8 @@ set -ex
 # we have to slightly reorganize the AA src files to make everything work
 mv ampliconarchitectlib/src/*.py ampliconarchitectlib/
 
-# add init for ampliconarchitect and ampliconclassifier tools, so they can be imported by AmpliconSuite-pipeline
+# add init for ampliconarchitect, so it can be imported by AmpliconSuite-pipeline
 touch ampliconarchitectlib/__init__.py
-touch ampliconclassifierlib/__init__.py
 
 # make the bin dir if it doesn't exist
 mkdir -p $PREFIX/bin
@@ -16,6 +15,10 @@ mkdir -p $PREFIX/bin
 # setup.py will handle this in the next release
 cp AmpliconSuite-pipeline.py ${PREFIX}/bin/AmpliconSuite-pipeline.py
 cp GroupedAnalysisAmpSuite.py ${PREFIX}/bin/GroupedAnalysisAmpSuite.py
+cp amplicon_classifier.py ${PREFIX}/bin/amplicon_classifier.py
+cp feature_similarity.py ${PREFIX}/bin/feature_similarity.py
+cp make_results_table.py ${PREFIX}/bin/make_results_table.py
+cp make_input.sh ${PREFIX}/bin/make_input.sh
 
 # Python command to install the package.
 $PYTHON setup.py install --install-data aa_data_repo/ --single-version-externally-managed --record=record.txt
diff --git a/recipes/ampliconsuite/meta.yaml b/recipes/ampliconsuite/meta.yaml
index c9c176cf96577..41257912601be 100644
--- a/recipes/ampliconsuite/meta.yaml
+++ b/recipes/ampliconsuite/meta.yaml
@@ -1,26 +1,28 @@
-{% set AS_version="0.1555.2" %}
-{% set AA_version="1.3.r5" %}
-{% set AC_version="0.5.3" %}
+{% set name="ampliconsuite" %}
+{% set AS_version="1.3.2" %}
+{% set AA_version="1.4.r1" %}
+{% set AC_version="1.1.4" %}
 
 package:
-    name: ampliconsuite
+    name: {{ name }}
     version: {{ AS_version }}
 
 source:
-    # the sha256 sum is generate by doing 
+    # the sha256 sum is generated by doing
     # $ wget -O- [URL] | shasum -a 256
     - url: https://github.com/AmpliconSuite/AmpliconSuite-pipeline/archive/v{{ AS_version }}.tar.gz
-      sha256: 1245d036c691821fcc2807e923010e29e3588796a72e63c36d2f630dae333ab9
+      sha256: 02b75970104d2f58b12297cf0cae1122415d38bdfb53db05ce1cbcb370c029aa
     - url: https://github.com/AmpliconSuite/AmpliconArchitect/archive/v{{ AA_version }}.tar.gz
-      sha256: f103223da49901ef0d04d0886ed8ea86f23067df93b15424c5af6a95850f3777
+      sha256: d62e30999c69b994691c8a61b09255a0b223906fd76709febc0ae8387164f208
       folder: ampliconarchitectlib
     - url: https://github.com/AmpliconSuite/AmpliconClassifier/archive/v{{ AC_version }}.tar.gz
-      sha256: 222405cc78f12b6089e03831592161c207f1440f6a9b96ed8ace74c721d5df02
-      folder: ampliconclassifierlib
+      sha256: bb5250d75e19ab7ece6d3ca554bc736a7b7b173743a4ea933e10a4084442eb2c
 
 build:
     noarch: python
-    number: 1
+    number: 0
+    run_exports:
+        - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
     build:
@@ -39,18 +41,23 @@ requirements:
         - pysam
         - samtools
         - scipy
+        - bedtools
     host:
         - python >=3
 
 test:
     commands:
     - AmpliconSuite-pipeline.py -v
+    - GroupedAnalysisAmpSuite.py -v
+    - amplicon_classifier.py -v
+    - feature_similarity.py -h
+    - make_results_table.py -h
     imports:
     - paalib
     - ampliconarchitectlib
-    - ampliconclassifierlib
+    - ampclasslib
 
 about:
     home: https://github.com/AmpliconSuite
-    license: BSD 2-Clause License
+    license: BSD 2-Clause License (AmpliconSuite-pipeline and AmpliconClassifier) & University of California Software License (AmpliconArchitect). Please see https://github.com/AmpliconSuite/AmpliconSuite-pipeline for more details on licenses.
     summary: An end-to-end wrapper for focal amplification analysis from whole-genome sequencing using AmpliconArchitect and associated tools.
diff --git a/recipes/amplify/build.sh b/recipes/amplify/build.sh
index 94a9322f414cc..3795944d08f32 100644
--- a/recipes/amplify/build.sh
+++ b/recipes/amplify/build.sh
@@ -4,8 +4,8 @@ mkdir -p ${PREFIX}/bin/
 mkdir -p ${PREFIX}/share/amplify/
 mkdir -p ${PREFIX}/share/amplify/src/
 mkdir -p ${PREFIX}/share/amplify/models/
-cp -r src/. ${PREFIX}/share/amplify/src
-cp -r models/. ${PREFIX}/share/amplify/models
+cp -r src/. ${PREFIX}/share/amplify/src/
+cp -r models/. ${PREFIX}/share/amplify/models/
 
 echo "#!/bin/bash" > ${PREFIX}/bin/AMPlify
 echo "${PREFIX}/share/amplify/src/AMPlify.py \$@" >> ${PREFIX}/bin/AMPlify
diff --git a/recipes/amplify/meta.yaml b/recipes/amplify/meta.yaml
index 28e7d52ba1728..6df2912c42852 100644
--- a/recipes/amplify/meta.yaml
+++ b/recipes/amplify/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "amplify" %}
-{% set version = "1.1.0" %}
+{% set version = "2.0.0" %}
 
 package:
   name: '{{ name|lower }}'
@@ -7,22 +7,27 @@ package:
 
 source:
   url: https://github.com/bcgsc/AMPlify/archive/v{{ version }}.tar.gz
-  sha256: 8ce9cc10fbb73048b8d8906a387130d9a1ac24928c4762cd190861d44ebb4466
+  sha256: 94418a9e2f09b1cfc63eff047fab6d15cce5a7afae5283e50ab809dac2de8752
 
 build:
-  number: 0
+  number: 1
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
 
 requirements:
+  host:
+    - python =3.6
   run:
     - python =3.6
     - keras =2.2.4
-    - tensorflow =1.12
+    - tensorflow >=1.10, <1.13
     - numpy <1.17
     - biopython
     - pandas
     - scikit-learn
     - h5py <3
+    - absl-py <2
 
 test:
   commands:
diff --git a/recipes/ampligone/meta.yaml b/recipes/ampligone/meta.yaml
index c66ab417c98e0..9189a1164ae51 100644
--- a/recipes/ampligone/meta.yaml
+++ b/recipes/ampligone/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "AmpliGone" %}
-{% set version = "1.2.1" %}
+{% set version = "1.3.1" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,11 +7,13 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 0a588f01bea477bf1515ef37308fcfc5f566e041832f3e99c5dedced8ab30981
+  sha256: f53520874f5f3301b6099142e1d79264a96820add09affb0130744eb39ae4139
 
 build:
   noarch: python
   number: 0
+  run_exports:
+    - {{ pin_subpackage("ampligone", max_pin="x") }}  
   entry_points:
     - ampligone = AmpliGone.AmpliGone:main
     - AmpliGone = AmpliGone.AmpliGone:main
@@ -51,4 +53,4 @@ extra:
   recipe-maintainers:
     - florianzwagemaker
     - KHajji
-    - ids-bioinformatics
+    - ids-bioinformatics
\ No newline at end of file
diff --git a/recipes/amplisim/build.sh b/recipes/amplisim/build.sh
new file mode 100644
index 0000000000000..01537b262a0d0
--- /dev/null
+++ b/recipes/amplisim/build.sh
@@ -0,0 +1,18 @@
+#!/bin/sh
+
+ls -l -a
+cd lib
+git clone --recursive https://github.com/samtools/htslib.git
+cd htslib
+git reset --hard 7f5136f
+cd htscodecs
+git reset --hard 11b5007
+cd ../../..
+
+make -C lib/htslib CC=${CC} CFLAGS="${CFLAGS} -g -Wall -O2 -fvisibility=hidden" LDFLAGS="${LDFLAGS} -fvisibility=hidden" lib-static
+
+mkdir -p build
+make CXX=${CXX} CXXFLAGS="${CXXFLAGS} -O3 -DNDEBUG -Wno-missing-field-initializers -Wno-unused-function" LDLIBS="${LDFLAGS}"
+
+mkdir -p ${PREFIX}/bin
+cp amplisim ${PREFIX}/bin
diff --git a/recipes/amplisim/meta.yaml b/recipes/amplisim/meta.yaml
new file mode 100644
index 0000000000000..68aa49bcbceca
--- /dev/null
+++ b/recipes/amplisim/meta.yaml
@@ -0,0 +1,47 @@
+{% set version = "0.2.1" %}
+{% set sha256 = "3b101a7d15be0d31a43451368046a39ab04e006fa006e240b02fe6c80e6cc8eb" %}
+
+package:
+  name: amplisim
+  version: {{ version }}
+
+source:
+  url: https://github.com/rki-mf1/amplisim/archive/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage('amplisim', max_pin="x") }}
+
+requirements:
+  build:
+    - {{ compiler('cxx') }}
+    - {{ compiler('c') }}
+    - make
+  host:
+    - zlib
+    - xz
+    - bzip2
+    - libcurl
+    - libdeflate
+  run:
+    - zlib
+    - xz
+    - bzip2
+    - libcurl
+    - libdeflate
+
+test:
+  source_files:
+    - test/MN908947.3.spike.fasta
+    - test/SARS-CoV-2.spike.primer.bed
+  commands:
+    - amplisim --help
+
+about:
+  home: https://github.com/rki-mf1/amplisim
+  license_file: LICENSE
+  license: Apache License 2.0
+  summary: Plain simple amplicon sequence simulator for in-silico genomic sequencing assays.
diff --git a/recipes/amplisim/run_test.sh b/recipes/amplisim/run_test.sh
new file mode 100644
index 0000000000000..1536c294002d3
--- /dev/null
+++ b/recipes/amplisim/run_test.sh
@@ -0,0 +1,6 @@
+#!/bin/bash
+
+amplisim \
+    -o test/amplicons.spike.fasta \
+    test/MN908947.3.spike.fasta \
+    test/SARS-CoV-2.spike.primer.bed
diff --git a/recipes/amptk/meta.yaml b/recipes/amptk/meta.yaml
index 09e42d3681c10..69f4b96b9ca4f 100644
--- a/recipes/amptk/meta.yaml
+++ b/recipes/amptk/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "amptk" %}
-{% set version = "1.5.5" %}
+{% set version = "1.6.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,19 +7,23 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 0ac8e1c1a312e0cdc46de08b0506bbafd493da1b4c7ee419fe0025c22f3d44a6
+  sha256: dbb6383ccfc26204a8d3147be8650a42ea6add8afcf73159c53bf2ecf3d47581
 
 build:
   number: 0
   noarch: python
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vvv "
+  entry_points:
+    - amptk=amptk.amptk:main
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('amptk', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - python
+    - python >=3
   run:
-    - python
+    - python >=3
     - biopython
     - psutil
     - python-edlib >=1.2.1
@@ -50,7 +54,7 @@ test:
 
 about:
   home: https://github.com/nextgenusfs/amptk
-  license: BSD-2
+  license: BSD-2-Clause
   license_family: BSD
   license_file: LICENSE.md
   doc_url: http://amptk.readthedocs.io/
diff --git a/recipes/ananse/meta.yaml b/recipes/ananse/meta.yaml
index eaeca43054cd3..dfb5cba2f79f0 100644
--- a/recipes/ananse/meta.yaml
+++ b/recipes/ananse/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.4.1" %}
+{% set version = "0.5.1" %}
 
 package:
   name: ananse
@@ -6,12 +6,14 @@ package:
 
 source:
   url: https://github.com/vanheeringen-lab/ANANSE/releases/download/v{{ version }}/ANANSE-{{ version }}.tar.gz
-  sha256: 4b8c63294c0ddf85247a3394e68756ce928d0d89a6d4b3e613dd6175a7bd31d5
+  sha256: 3ce5a41dbedb83913fdd451692cbf7df0e4ad3bd102d1ce67f9379329b35142b
 
 build:
   number: 0
   noarch: python
   script: {{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv
+  run_exports:
+    - {{ pin_subpackage("ananse", max_pin="x.x") }}
   
 requirements:
   host:
@@ -20,7 +22,7 @@ requirements:
   run:
     - python >=3.7
     - adjusttext
-    - dask
+    - dask <=2023.9.1
     - genomepy >=0.14.0
     - gimmemotifs-minimal >=0.18.0
     - loguru
@@ -28,7 +30,7 @@ requirements:
     - networkx
     - numpy >=1.6
     - openpyxl
-    - pandas
+    - pandas <2
     - pybedtools
     - pydot >=1.4.1
     - pygraphviz >=1.7
diff --git a/recipes/anansescanpy/meta.yaml b/recipes/anansescanpy/meta.yaml
index e53033971199d..7939a37e114b6 100644
--- a/recipes/anansescanpy/meta.yaml
+++ b/recipes/anansescanpy/meta.yaml
@@ -11,7 +11,9 @@ source:
   sha256: 9efd6ca2c1e5a9fc1ab70030f74f4a063f7e7ac065e6c7942d8b8cd08626accf
 
 build:
-  number: 0
+  number: 1
+  run_exports:
+    - {{ pin_subpackage("anansescanpy", max_pin="x.") }}  
   noarch: python
   script: {{ PYTHON }} -m pip install . -vv
 
diff --git a/recipes/anansnake/meta.yaml b/recipes/anansnake/meta.yaml
index d69e1fcab01f4..6823e53bf21c2 100644
--- a/recipes/anansnake/meta.yaml
+++ b/recipes/anansnake/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.0.1" %}
+{% set version = "0.1.0" %}
 
 
 package:
@@ -7,21 +7,23 @@ package:
 
 source:
   url: https://github.com/vanheeringen-lab/anansnake/releases/download/{{ version }}/anansnake-{{ version }}.tar.gz
-  sha256: 4b2e71102aa3d9ee316ca569ae8c1da7332a6e5dfe7a9ee48bbd169cd074c7dd
+  sha256: baafb8a89c14e15965916968ac55994594c2f51426a3806f7b2cd8b212cb4fa7
 
 build:
   number: 0
   noarch: python
   script: {{ PYTHON }} -m pip install . -vv
+  run_exports:
+    - {{ pin_subpackage('anansnake', max_pin="x.x") }}
 
 requirements:
   host:
+    - python
     - pip
     - hatchling >=1.5.0
-    - python =3.8
   run:
-    - python =3.8
-    - seq2science =0.9.7
+    - python
+    - seq2science =1.2.1
 
 test:
   commands:
diff --git a/recipes/ancestry_hmm-s/meta.yaml b/recipes/ancestry_hmm-s/meta.yaml
index 1080842dc5b44..27e8fb91c3ef8 100644
--- a/recipes/ancestry_hmm-s/meta.yaml
+++ b/recipes/ancestry_hmm-s/meta.yaml
@@ -10,7 +10,9 @@ source:
   sha256: 3bbee77945f7c90b6aeddb27ca388411d91bc61c4b770dd1750492beeee9583f
 
 build:
-  number: 4
+  number: 5
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x.x") }}  
 
 requirements:
   build:
@@ -39,3 +41,5 @@ about:
 extra:
   identifiers:
     - doi:10.1101/2020.08.02.232934 # bioRxiv preprint
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/ancestry_hmm/meta.yaml b/recipes/ancestry_hmm/meta.yaml
index ade1fb5b597eb..c1dc3d738c45c 100644
--- a/recipes/ancestry_hmm/meta.yaml
+++ b/recipes/ancestry_hmm/meta.yaml
@@ -11,7 +11,9 @@ source:
   sha256: {{sha256}}
 
 build:
-  number: 1
+  number: 2
+  run_exports:
+    - {{ pin_subpackage("ancestry_hmm", max_pin="x.x.x") }}  
 
 requirements:
   build:
@@ -39,3 +41,5 @@ about:
 extra:
   identifiers:
     - doi:10.1371/journal.pgen.1006529
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/anchorwave/build.sh b/recipes/anchorwave/build.sh
index 0925572c39366..238861d1d49cb 100644
--- a/recipes/anchorwave/build.sh
+++ b/recipes/anchorwave/build.sh
@@ -2,48 +2,63 @@
 
 set -eux
 
-mkdir -p build/{sse2,sse4.1,avx2,avx512}
-
-# SSE2
-rm CMakeLists.txt
-ln -s CMakeLists_sse2.txt CMakeLists.txt
-cd build/sse2
-cmake -DCMAKE_INSTALL_PREFIX="${PREFIX}" ../..
-make -j"${CPU_COUNT}"
-make install
-mv "${PREFIX}/bin/anchorwave" "${PREFIX}/bin/anchorwave_sse2"
-cd ../..
-
-# SSE4.1
-rm CMakeLists.txt
-ln -s CMakeLists_sse4.1.txt CMakeLists.txt
-cd build/sse4.1
-cmake -DCMAKE_INSTALL_PREFIX="${PREFIX}" ../..
-make -j"${CPU_COUNT}"
-make install
-mv "${PREFIX}/bin/anchorwave" "${PREFIX}/bin/anchorwave_sse4.1"
-cd ../..
-
-# AVX2
-rm CMakeLists.txt
-ln -s CMakeLists_avx2.txt CMakeLists.txt
-cd build/avx2
-cmake -DCMAKE_INSTALL_PREFIX="${PREFIX}" ../..
-make -j"${CPU_COUNT}"
-make install
-mv "${PREFIX}/bin/anchorwave" "${PREFIX}/bin/anchorwave_avx2"
-cd ../..
-
-# AVX512
-rm CMakeLists.txt
-ln -s CMakeLists_avx512.txt CMakeLists.txt
-cd build/avx512
-cmake -DCMAKE_INSTALL_PREFIX="${PREFIX}" ../..
-make -j"${CPU_COUNT}"
-make install
-mv "${PREFIX}/bin/anchorwave" "${PREFIX}/bin/anchorwave_avx512"
-cd ../..
-
-# wrapper script
-cp "${RECIPE_DIR}/anchorwave" "${PREFIX}/bin/anchorwave"
-chmod +x "${PREFIX}/bin/anchorwave"
+if [ $TARGET_PLATFORM = "Linux" ]; then
+    mkdir -p build/{sse2,sse4.1,avx2,avx512}
+
+    # SSE2
+    rm CMakeLists.txt
+    ln -s CMakeLists_sse2.txt CMakeLists.txt
+    cd build/sse2
+    cmake -DCMAKE_INSTALL_PREFIX="${PREFIX}" ../..
+    make -j"${CPU_COUNT}"
+    make install
+    mv "${PREFIX}/bin/anchorwave" "${PREFIX}/bin/anchorwave_sse2"
+    cd ../..
+
+    # SSE4.1
+    rm CMakeLists.txt
+    ln -s CMakeLists_sse4.1.txt CMakeLists.txt
+    cd build/sse4.1
+    cmake -DCMAKE_INSTALL_PREFIX="${PREFIX}" ../..
+    make -j"${CPU_COUNT}"
+    make install
+    mv "${PREFIX}/bin/anchorwave" "${PREFIX}/bin/anchorwave_sse4.1"
+    cd ../..
+
+    # AVX2
+    rm CMakeLists.txt
+    ln -s CMakeLists_avx2.txt CMakeLists.txt
+    cd build/avx2
+    cmake -DCMAKE_INSTALL_PREFIX="${PREFIX}" ../..
+    make -j"${CPU_COUNT}"
+    make install
+    mv "${PREFIX}/bin/anchorwave" "${PREFIX}/bin/anchorwave_avx2"
+    cd ../..
+
+    # AVX512
+    rm CMakeLists.txt
+    ln -s CMakeLists_avx512.txt CMakeLists.txt
+    cd build/avx512
+    cmake -DCMAKE_INSTALL_PREFIX="${PREFIX}" ../..
+    make -j"${CPU_COUNT}"
+    make install
+    mv "${PREFIX}/bin/anchorwave" "${PREFIX}/bin/anchorwave_avx512"
+    cd ../..
+
+    # wrapper script
+    cp "${RECIPE_DIR}/anchorwave" "${PREFIX}/bin/anchorwave"
+    chmod +x "${PREFIX}/bin/anchorwave"
+elif [ $TARGET_PLATFORM = "macOS" ]; then
+    mkdir -p build/macOS
+
+    # macOS (SSE4.1)
+    rm CMakeLists.txt
+    ln -s CMakeLists_MACOSX86.txt CMakeLists.txt
+    cd build/macOS
+    cmake -DCMAKE_INSTALL_PREFIX="${PREFIX}" ../..
+    make -j"${CPU_COUNT}"
+    make install
+else
+    echo "TARGET_PLATFORM must be Linux or macOS" >&2
+    exit 1
+fi
diff --git a/recipes/anchorwave/meta.yaml b/recipes/anchorwave/meta.yaml
index d6e7839e1000a..d4e34368db76c 100644
--- a/recipes/anchorwave/meta.yaml
+++ b/recipes/anchorwave/meta.yaml
@@ -1,10 +1,10 @@
-{% set name = "AnchorWave" %}
-{% set version = "1.2.1" %}
-{% set tag = "v1.2.1" %}
-{% set sha256 = "0e64f7b62579bbf9106a7a2f13330b8e16846176d6423db648d79b74b3dff2e7" %}
+{% set name = "anchorwave" %}
+{% set version = "1.2.3" %}
+{% set tag = "v1.2.3" %}
+{% set sha256 = "1f689c06f9bbc8e1ed64c0addf4aaf5d172a2fea1e55660b8d3f6dfdffe3f157" %}
 
 package:
-  name: {{ name | lower }}
+  name: {{ name }}
   version: {{ version }}
 
 source:
@@ -12,8 +12,13 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 1
-  skip: True  # [not linux]
+  number: 0
+  script_env:
+    - TARGET_PLATFORM=macOS  # [osx]
+    - TARGET_PLATFORM=Linux  # [linux]
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+  skip: True  # [not unix]
 
 requirements:
   build:
diff --git a/recipes/andi/meta.yaml b/recipes/andi/meta.yaml
index 87bcb3ad352b4..5ba6dda792069 100644
--- a/recipes/andi/meta.yaml
+++ b/recipes/andi/meta.yaml
@@ -1,15 +1,17 @@
-{% set version = "0.13" %}
+{% set version = "0.14" %}
 
 package:
   name: andi
   version: {{ version }}
 
 build:
-  number: 4
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("andi", max_pin="x.x") }}
 
 source:
   url: https://github.com/EvolBioInf/andi/releases/download/v{{ version }}/andi-{{ version }}.tar.gz
-  sha256: 03e493ee22b6773a600b47cbfb121f4c2affd6e646ea16dad0d322e9276b3943
+  sha256: ae48cea10bfb008f89b7ac5cc06ea9ffa005716c12ac58922f33d1bf12da89ac
 
 requirements:
   build:
diff --git a/recipes/anglerfish/meta.yaml b/recipes/anglerfish/meta.yaml
index f93c689dee9fc..d15537aa287a2 100644
--- a/recipes/anglerfish/meta.yaml
+++ b/recipes/anglerfish/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "anglerfish" %}
-{% set version = "0.5.0" %}
+{% set version = "0.6.1" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,28 +7,30 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/b/bio-{{ name }}/bio-{{ name }}-{{ version }}.tar.gz"
-  sha256: 7c6b41e1220f805cc5f9f571d2fc8781f7159ff7cf788385706ec9e37bffbf4e
+  sha256: 91a62cbbc388009bd503df0d3f64441c0e86ab377da46f721f5fcf82b9cce331
 
 build:
   number: 0
   noarch: python
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "cp ${RECIPE_DIR}/requirements.txt ${SRC_DIR} && {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  entry_points:
+    - anglerfish=anglerfish.anglerfish:anglerfish
+  run_exports:
+    - {{ pin_subpackage('anglerfish', max_pin="x.x") }}
 
 requirements:
   host:
-    - biopython
-    - numpy
     - pip
-    - python ==3.9.*
-    - python-levenshtein
-    - pyyaml
+    - python >=3.7
   run:
     - biopython
+    - click
+    - minimap2
     - numpy
-    - python ==3.9.*
+    - pandas
+    - python >=3.7
     - python-levenshtein
     - pyyaml
-    - minimap2
 
 test:
   imports:
diff --git a/recipes/anglerfish/requirements.txt b/recipes/anglerfish/requirements.txt
new file mode 100644
index 0000000000000..db39464867253
--- /dev/null
+++ b/recipes/anglerfish/requirements.txt
@@ -0,0 +1,6 @@
+biopython==1.83
+click==8.1.7
+levenshtein==0.23.0
+numpy==1.26.3
+pandas==2.1.4
+pyyaml==6.0.1
\ No newline at end of file
diff --git a/recipes/angsd/meta.yaml b/recipes/angsd/meta.yaml
index 4b2e5be264ddf..ada38cb647493 100644
--- a/recipes/angsd/meta.yaml
+++ b/recipes/angsd/meta.yaml
@@ -12,7 +12,9 @@ source:
 
 
 build:
-  number: 2
+  number: 3
+  run_exports:
+    - {{ pin_subpackage("angsd", max_pin="x.x") }}  
   skip: True  # [osx]
 
 requirements:
@@ -45,3 +47,5 @@ extra:
   identifiers:
     - biotools:angsd
     - doi:10.1186/s12859-014-0356-4
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/aniclustermap/meta.yaml b/recipes/aniclustermap/meta.yaml
index 39002e9c0859d..dd5865cca6efc 100644
--- a/recipes/aniclustermap/meta.yaml
+++ b/recipes/aniclustermap/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "aniclustermap" %}
-{% set version = "1.2.0" %}
+{% set version = "1.3.0" %}
 
 package:
   name: {{ name|lower }}
@@ -7,19 +7,21 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/aniclustermap-{{ version }}.tar.gz
-  sha256: 82a831c35c04677a7708610fe705222b98b7b3f0e6f4d74de1d8e357b55ae61d
+  sha256: 67b909f1c987092b198227b2588ea4e634b6f46fe156f450a8d8741d0acd7bae
 
 build:
   entry_points:
     - ANIclustermap = aniclustermap.aniclustermap:main
   noarch: python
-  script: {{ PYTHON }} -m pip install . -vv
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
   number: 0
+  run_exports:
+    - {{ pin_subpackage('aniclustermap', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - poetry
+    - poetry-core
     - python >=3.8
   run:
     - python >=3.8
@@ -33,10 +35,8 @@ test:
   imports:
     - aniclustermap
   commands:
-    - pip check
     - ANIclustermap --help
   requires:
-    - pip
     - pytest
   source_files:
     - tests/
@@ -45,6 +45,7 @@ about:
   home: https://github.com/moshi4/ANIclustermap/
   summary: A tool for drawing ANI clustermap between all-vs-all microbial genomes
   license: MIT
+  license_family: MIT
   license_file: LICENSE
 
 extra:
diff --git a/recipes/anise_basil/meta.yaml b/recipes/anise_basil/meta.yaml
index 6eb293b43fae4..39ee6a2a7275f 100644
--- a/recipes/anise_basil/meta.yaml
+++ b/recipes/anise_basil/meta.yaml
@@ -18,7 +18,9 @@ source:
 
 build:
   skip: True  # [py27]
-  number: 6
+  number: 7
+  run_exports:
+    - {{ pin_subpackage("anise_basil", max_pin="x.x.x") }}  
 
 requirements:
   build:
@@ -29,6 +31,7 @@ requirements:
   host:
     - boost-cpp
     - python
+    - zlib
   run:
     - python
 
@@ -51,3 +54,5 @@ about:
 extra:
   identifiers:
     - doi:10.1093/bioinformatics/btv051
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/anndata2ri/meta.yaml b/recipes/anndata2ri/meta.yaml
index 63e20b0229ec1..b9c15422687c7 100644
--- a/recipes/anndata2ri/meta.yaml
+++ b/recipes/anndata2ri/meta.yaml
@@ -1,18 +1,20 @@
 {% set name = "anndata2ri" %}
-{% set version = "1.2" %}
+{% set version = "1.3.1" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 build:
-  number: 0
+  number: 1
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps -vvv"
+  run_exports:
+    - {{ pin_subpackage('anndata2ri', max_pin="x") }}
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 72818996dad63cce2161fc97558d38fa8781c1b8d0aaa1c7204429a85ada553b
+  sha256: 0e3fa2f81789f682d19ef452fabdb401ec27899db9abe5a78e45e21dcc7caa42
 
 requirements:
   host:
@@ -20,14 +22,14 @@ requirements:
     - flit
     - pip
     - get_version
-    - rpy2 >=3.4.3
+    - rpy2 >=3.5.2
     - hatchling
     - hatch-vcs
   run:
     - python >=3.6
     - anndata
     - get_version
-    - rpy2 >=3.4.3
+    - rpy2 >=3.5.2
     - tzlocal
 
 test:
diff --git a/recipes/annembed/build.sh b/recipes/annembed/build.sh
new file mode 100644
index 0000000000000..f4634f476014f
--- /dev/null
+++ b/recipes/annembed/build.sh
@@ -0,0 +1,8 @@
+#!/bin/bash -euo
+
+# Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
+# We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
+export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="$(pwd)/.cargo"
+
+# build statically linked binary with Rust
+RUST_BACKTRACE=1 cargo install --features intel-mkl-static --verbose --path . --root $PREFIX
diff --git a/recipes/annembed/meta.yaml b/recipes/annembed/meta.yaml
new file mode 100644
index 0000000000000..8b87e6aa37968
--- /dev/null
+++ b/recipes/annembed/meta.yaml
@@ -0,0 +1,36 @@
+{% set version = "0.1.4" %}
+
+package:
+  name: annembed
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+      - {{ pin_subpackage('annembed', max_pin="x.x") }}
+  skip: True  # [osx]
+source:
+  url: https://github.com/jianshu93/annembed/archive/v{{ version }}.tar.gz
+  sha256: 0f923798db3843aac0352eba5d2b169673ee087fce2cc37981bd19a1ecb878d0
+
+requirements:
+  build:
+    - {{ compiler("cxx") }}
+    - {{ compiler('c') }}
+    - rust >=1.39
+    - make
+    - cmake
+
+test:
+  commands:
+    - annembed -h
+
+about:
+  home: https://github.com/jianshu93/annembed
+  license: MIT
+  summary: annembed is an ultra-fast and scalable non-linear dimension reduction algorithm (similar to UMAP or t-SNE) for large-scale biological data
+
+extra:
+  maintainers:
+   - Jean Pierre-Both
+   - Jianshu Zhao
diff --git a/recipes/annonars/meta.yaml b/recipes/annonars/meta.yaml
index 485e55df6d241..fa23534ad1dd2 100644
--- a/recipes/annonars/meta.yaml
+++ b/recipes/annonars/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.13.0" %}
+{% set version = "0.36.2" %}
 
 package:
   name: annonars
@@ -7,10 +7,12 @@ package:
 build:
   number: 0
   skip: True # [osx]
+  run_exports:
+    - {{ pin_subpackage("annonars", max_pin="x.x") }}
 
 source:
-  url: https://github.com/bihealth/annonars/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: ff578294324da4445381a9a55ea03969cf8665dc008384879919ded6169c4772
+  url: https://github.com/varfish-org/annonars/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 89b39a7e08ceb33ffc99364396222fffdda7e2fabd313bebf2976b365ed057c3
 
 requirements:
   build:
@@ -35,7 +37,7 @@ test:
     - annonars --help
 
 about:
-  home: https://github.com/bihealth/annonars
+  home: https://github.com/varfish-org/annonars
   license: Apache-2.0
   license_file: LICENSE.txt
   summary: 'Genome annotation based on Rust and RocksDB.'
@@ -43,3 +45,6 @@ about:
 extra:
   recipe-maintainers:
     - holtgrewe
+    - tedil
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/annosine2/meta.yaml b/recipes/annosine2/meta.yaml
new file mode 100644
index 0000000000000..e3e0c6c3e22fc
--- /dev/null
+++ b/recipes/annosine2/meta.yaml
@@ -0,0 +1,60 @@
+{% set name = "annosine2" %}
+{% set version = "2.0.7" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: 94387b895e2b011125211039598b8c426124aa43be6915697243497eefb7fff8
+
+build:
+  number: 0
+  entry_points:
+    - AnnoSINE_v2 = AnnoSINE.AnnoSINE_v2:main
+  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vvv "
+  run_exports:
+        - {{ pin_subpackage('annosine2', max_pin="x") }}
+  noarch: python
+
+requirements:
+  host:
+    - pip
+    - python
+  run:
+    - cycler 
+    - kiwisolver
+    - matplotlib-base
+    - numpy
+    - pandas
+    - pillow
+    - pyparsing
+    - python
+    - python-dateutil
+    - six
+    - hmmer 
+    - minimap2
+    - nodejs
+    - trf
+    - irf
+    - cd-hit
+    - repeatmasker
+    - seqtk
+
+
+test:
+  imports:
+    - AnnoSINE
+  commands:
+    - AnnoSINE_v2 --help
+
+about:
+  home: https://github.com/liaoherui/AnnoSINE_v2
+  license: MIT
+  license_family: MIT
+  summary: AnnoSINE_v2 - SINE Annotation Tool for Plant and Animal Genomes
+
+extra:
+  recipe-maintainers:
+    - liaoherui
diff --git a/recipes/annotsv/meta.yaml b/recipes/annotsv/meta.yaml
index 61a93cc9581cb..81da5cb827871 100644
--- a/recipes/annotsv/meta.yaml
+++ b/recipes/annotsv/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "annotsv" %}
-{% set version = "3.3.6" %}
-{% set sha256 = "d19b3280faa78acde595db3341f34761926732304af20bfc866d54ab0510a2a1" %}
+{% set version = "3.4.2" %}
+{% set sha256 = "a8a06fc60bd4c8fb380598097f644f02ed22051b5b30f4eb42b2474b170fe91d" %}
 
 package:
   name: {{ name }}
@@ -9,6 +9,8 @@ package:
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('annotsv', max_pin="x") }}
 
 source:
   url: https://github.com/lgmgeo/AnnotSV/archive/refs/tags/v{{ version }}.tar.gz
@@ -32,6 +34,10 @@ requirements:
     - natsort >=7.1.1
     - pandas >=1.5.2
     - tqdm >=4.64.1
+    - polars >=0.16.5
+    - appdirs
+    - git
+    - make
 
 # Tests AnnotSV, the annotations install script and variantconvert (needed for VCF outputs)
 test:
@@ -42,6 +48,7 @@ test:
 
 about:
   home: https://github.com/lgmgeo/AnnotSV
-  license: GPL-3.0
+  license: GPL-3.0-only
+  license_family: GPL3
   license_file: License.txt
-  summary: Annotation and Ranking of Structural Variation 
+  summary: Annotation and Ranking of Structural Variation
diff --git a/recipes/annotwg/meta.yaml b/recipes/annotwg/meta.yaml
index fd06dc96d44b1..d2e294561f1b9 100644
--- a/recipes/annotwg/meta.yaml
+++ b/recipes/annotwg/meta.yaml
@@ -7,7 +7,9 @@ package:
   version: {{ version }}
 
 build:
-  number: 0
+  number: 1
+  run_exports:
+    - {{ pin_subpackage("annotwg", max_pin="x") }}  
   noarch: generic
 
 source:
diff --git a/recipes/antismash-lite/build.sh b/recipes/antismash-lite/build.sh
index 9b87424be5101..3ad1536ca047f 100644
--- a/recipes/antismash-lite/build.sh
+++ b/recipes/antismash-lite/build.sh
@@ -1,5 +1,5 @@
 #!/bin/bash
 
 echo "include antismash/detection/genefinding/data/train_crypto" >> MANIFEST.in
-df -h 
-$PYTHON -m pip install . --ignore-installed --no-deps -vv
\ No newline at end of file
+df -h
+$PYTHON -m pip install . --no-build-isolation --no-deps --no-cache-dir -vvv
diff --git a/recipes/antismash-lite/meta.yaml b/recipes/antismash-lite/meta.yaml
index 2e3d43924775c..a41431b1a3b3f 100644
--- a/recipes/antismash-lite/meta.yaml
+++ b/recipes/antismash-lite/meta.yaml
@@ -1,59 +1,65 @@
-{% set name = "antiSMASH-lite" %}
-{% set version = "6.1.1" %}
-{% set sha256 = "38c9fa8d34dea2552d3b21e3cb2ca293864f2f53d381764de9dd3d5f0b40139e" %}
+{% set name = "antismash-lite" %}
+{% set version = "7.1.0" %}
+{% set sha256 = "5c01cce48ef5cc2bc60bfd2e185a5937e731e86a711c4c822a336640984e9b48" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
-build:
-  number: 1
-  noarch: python
-
 source:
   url: https://dl.secondarymetabolites.org/releases/{{ version }}/antismash-{{ version }}.tar.gz
   sha256: {{ sha256 }}
 
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - download-antismash-databases=antismash.download_databases:_main
+    - antismash=antismash.__main__:entrypoint
+  run_exports:
+    - {{ pin_subpackage('antismash-lite', max_pin="x") }}
+
 requirements:
   host:
-    - python >=3.7
+    - python >=3.9
     - pip
   run:
-    - python >=3.7
+    - python >=3.9
+    - brawn >=1.0.1
     - numpy
-    - biopython 1.78
-    - helperlibs >=0.2.0
+    - biopython 1.78.*
+    - helperlibs >=0.2.1
     - jinja2
     - joblib
     - jsonschema
-    - markupsafe >=2.0
+    - markupsafe >=2.1.0
+    - nrpys >=0.1.1
     - pysvg-py3
     - bcbio-gff
-    - pyscss
+    - libsass
     - matplotlib-base
     - scipy
-    - openjdk
-    - scikit-learn >=0.19
-    - diamond >=0.9,<=2.0.15
+    - scikit-learn >=1.3.2
+    - moods >=1.9.4
+    - diamond
     - fasttree 2.1.*
-    - glimmerhmm ==3.0.*
+    - glimmerhmm 3.0.*
     - hmmer2
     - hmmer >=3.1b2
-    - meme <=4.11.2
-    - muscle 3.8.*
+    - meme 4.11.2
     - blast
     - prodigal
 
 test:
+  imports:
+    - antismash
   commands:
-    - antismash -h
-    - blastp -help
-    - fasttree -help
-    - diamond --help 2>&1 > /dev/null
+    - antismash --help
+    - download-antismash-databases --help
 
 about:
   home: https://docs.antismash.secondarymetabolites.org/intro/
-  license: AGPL-3.0
+  license: AGPL-3.0-or-later
   license_family: AGPL
   license_file: LICENSE.txt
   summary: antiSMASH - the antibiotics and Secondary Metabolite Analysis SHell
@@ -72,4 +78,5 @@ extra:
     - doi:10.1093/nar/gkx319
     - doi:10.1093/nar/gkz310
     - doi:10.1093/nar/gkab335
+    - doi:10.1093/nar/gkad344
     - usegalaxy-eu:antismash
diff --git a/recipes/antismash/build.sh b/recipes/antismash/build.sh
index e60c5bc782d58..336e0d884c8bf 100644
--- a/recipes/antismash/build.sh
+++ b/recipes/antismash/build.sh
@@ -1,5 +1,5 @@
 #!/bin/bash
 
 echo "include antismash/detection/genefinding/data/train_crypto" >> MANIFEST.in
-df -h 
-$PYTHON -m pip install . --ignore-installed --no-deps -vv
+df -h
+${PYTHON} -m pip install . --no-build-isolation --no-deps --no-cache-dir -vvv
diff --git a/recipes/antismash/meta.yaml b/recipes/antismash/meta.yaml
index 6d4818140a158..c6ae23bcad79e 100644
--- a/recipes/antismash/meta.yaml
+++ b/recipes/antismash/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "antiSMASH" %}
-{% set version = "6.1.1" %}
-{% set sha256 = "38c9fa8d34dea2552d3b21e3cb2ca293864f2f53d381764de9dd3d5f0b40139e" %}
+{% set version = "7.1.0" %}
+{% set sha256 = "5c01cce48ef5cc2bc60bfd2e185a5937e731e86a711c4c822a336640984e9b48" %}
 
 package:
   name: {{ name|lower }}
@@ -9,6 +9,11 @@ package:
 build:
   number: 0
   noarch: python
+  entry_points:
+    - download-antismash-databases=antismash.download_databases:_main
+    - antismash=antismash.__main__:entrypoint
+  run_exports:
+    - {{ pin_subpackage('antismash', max_pin="x") }}
 
 source:
   url: https://dl.secondarymetabolites.org/releases/{{ version }}/antismash-{{ version }}.tar.gz
@@ -16,31 +21,33 @@ source:
 
 requirements:
   host:
-    - python >=3.7 
+    - python >=3.9
     - pip
+    - pytest
   run:
-    - python >=3.7
+    - python >=3.9
+    - brawn >=1.0.1
     - numpy
-    - biopython 1.78
-    - helperlibs >=0.2.0
+    - biopython 1.78.*
+    - helperlibs >=0.2.1
     - jinja2
     - joblib
     - jsonschema
     - markupsafe >=2.0
+    - nrpys >=0.1.1
     - pysvg-py3
     - bcbio-gff
-    - pyscss
+    - libsass
     - matplotlib-base
     - scipy
-    - openjdk
-    - scikit-learn >=0.19
-    - diamond 0.9.*
+    - scikit-learn >=1.3.2
+    - moods >=1.9.4.2
+    - diamond
     - fasttree 2.1.*
     - glimmerhmm ==3.0.*
     - hmmer2
-    - hmmer ==3.1b2
-    - meme <=4.11.2
-    - muscle 3.8.*
+    - hmmer >=3.1b2
+    - meme 4.11.2
     - blast
     - prodigal
 
@@ -53,7 +60,7 @@ test:
 
 about:
   home: https://docs.antismash.secondarymetabolites.org/intro/
-  license: AGPL-3.0
+  license: AGPL-3.0-or-later
   license_family: AGPL
   license_file: LICENSE.txt
   summary: antiSMASH - the antibiotics and Secondary Metabolite Analysis SHell
@@ -72,4 +79,5 @@ extra:
     - doi:10.1093/nar/gkx319
     - doi:10.1093/nar/gkz310
     - doi:10.1093/nar/gkab335
+    - doi:10.1093/nar/gkad344
     - usegalaxy-eu:antismash
diff --git a/recipes/antismash/post-link.sh b/recipes/antismash/post-link.sh
index 26fdad9e1d1cd..0df651f1df344 100644
--- a/recipes/antismash/post-link.sh
+++ b/recipes/antismash/post-link.sh
@@ -1,4 +1,11 @@
 #!/bin/bash
 
-# download the databases required by several options
+cat <<EOF >> ${PREFIX}/.messages.txt
+
+
+antiSMASH databases are no longer included in the antismash conda package due to a "no space left on device" error.
+Before using antiSMASH, please download the databases required by several options:
 download-antismash-databases
+
+
+EOF
diff --git a/recipes/anvio-minimal/meta.yaml b/recipes/anvio-minimal/meta.yaml
index 4c1d381c9b90f..8cd80ff415df2 100644
--- a/recipes/anvio-minimal/meta.yaml
+++ b/recipes/anvio-minimal/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "7.1" %}
-{% set sha256 = "5ff729ba392a530b200378cd55e0dd85032152da44dce0260daef2ddc3122c99" %}
+{% set version = "8" %}
+{% set sha256 = "4ced91773648d9ca27a20b725ab64bc213d80b33726940f5f818240033912c04" %}
 
 package:
   name: anvio-minimal
@@ -12,7 +12,9 @@ source:
 build:
   number: 0
   noarch: python
-  script: python -m pip install --no-deps --ignore-installed -vv .
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation --no-cache-dir -vvv .
+  run_exports:
+    - {{ pin_subpackage('anvio-minimal', max_pin="x.x") }}
 
 requirements:
   host:
@@ -20,18 +22,18 @@ requirements:
     - pip
   run:
     - python >=3
-    - numpy
+    - numpy <=1.24
     - bottle
     - pysam
     - ete3
     - scipy
-    - scikit-learn <0.21
+    - scikit-learn ==1.2.2
     - django
     - requests
-    - psutil ==5.4.3
+    - psutil
     - mistune
     - six
-    - pandas ==0.25.1
+    - pandas ==1.4.4
     - matplotlib-base
     - statsmodels
     - colored
@@ -40,24 +42,33 @@ requirements:
     - numba
     - sqlite >=3.31.1
     - paste
+    - multiprocess
+    - rich-argparse
+    - plotext
+    - networkx
     # these three are critical versions. any changes must be
     # tested with extra attention:
     - pyani ==0.2.10
     - snakemake-minimal ==5.10.0
+
 test:
   commands:
     - anvi-pan-genome --help
     - anvi-script-reformat-fasta --help
 
 about:
-  home: http://merenlab.org/software/anvio/
+  home: https://merenlab.org/software/anvio/
   license: GPL-3.0-or-later
   license_family: GPL3
   license_file: LICENSE.txt
   summary: "An interactive analysis and visualization platform for omics data"
-  dev_url:  https://github.com/merenlab/anvio
-  
+  dev_url: https://github.com/merenlab/anvio
+  doc_url: https://anvio.org/learn/
+
 extra:
   container:
     # extended-base generates en_US.UTF-8 locale and sets LC_ALL, LANG properly
     extended-base: True
+  identifiers:
+    - biotools:anvio
+    - doi:10.1038/s41564-020-00834-3
diff --git a/recipes/apscale/meta.yaml b/recipes/apscale/meta.yaml
index 495fa59ecdf6a..35804d0fc32bf 100644
--- a/recipes/apscale/meta.yaml
+++ b/recipes/apscale/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "apscale" %}
-{% set version = "1.6.3" %}
+{% set version = "1.7.1" %}
 
 package:
   name: {{ name|lower }}
@@ -7,14 +7,16 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/apscale-{{ version }}.tar.gz
-  sha256: cb9c08810cb2c55377ea4dde936f4321fd0a753ef853bb0fad621d4bb39d28da
+  sha256: 99ea723823313e33ee69373fbb9b12d7a62765fe6d74c9f69d61a2d4dc2ea69f
 
 build:
   entry_points:
     - apscale = apscale.__main__:main
   noarch: python
-  script: {{ PYTHON }} -m pip install . -vv
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
   number: 0
+  run_exports:
+    - {{ pin_subpackage('apscale', max_pin="x") }}
 
 requirements:
   host:
@@ -38,16 +40,15 @@ test:
   imports:
     - apscale
   commands:
-    - pip check
     - apscale --help
-  requires:
-    - pip
 
 about:
   home: https://github.com/DominikBuchner/apscale
   summary: Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data
   license: MIT
+  license_family: MIT
   license_file: LICENSE
+  dev_url: https://github.com/DominikBuchner/apscale
 
 extra:
   recipe-maintainers:
diff --git a/recipes/aquamis/build.sh b/recipes/aquamis/build.sh
index 184fa8b56c6b3..3f866d2cc9e14 100644
--- a/recipes/aquamis/build.sh
+++ b/recipes/aquamis/build.sh
@@ -6,7 +6,7 @@ mkdir -p $PREFIX/opt/aquamis/
 
 cp -r * $PREFIX/opt/aquamis/
 
-ln -s $PREFIX/opt/aquamis/scripts/aquamis_setup.sh $PREFIX/opt/aquamis/scripts/create_sampleSheet.sh $PREFIX/opt/aquamis/scripts/filter_json.py $PREFIX/opt/aquamis/scripts/parse_json.py $PREFIX/opt/aquamis/scripts/helper_functions.py $PREFIX/opt/aquamis/scripts/write_QC_report.Rmd $PREFIX/opt/aquamis/scripts/write_report.Rmd  $PREFIX/bin/
+ln -s $PREFIX/opt/aquamis/scripts/aquamis_setup.sh $PREFIX/opt/aquamis/scripts/aquamis_wrapper.sh $PREFIX/opt/aquamis/scripts/create_sampleSheet.sh $PREFIX/opt/aquamis/scripts/create_pass_samplesheet.sh $PREFIX/opt/aquamis/scripts/filter_json.py $PREFIX/bin/
 
 ln -s $PREFIX/opt/aquamis/aquamis.py $PREFIX/bin/aquamis
 
diff --git a/recipes/aquamis/meta.yaml b/recipes/aquamis/meta.yaml
index 2a7cb4606c3c8..ffb87431e2eeb 100644
--- a/recipes/aquamis/meta.yaml
+++ b/recipes/aquamis/meta.yaml
@@ -1,45 +1,64 @@
+{% set name = "AQUAMIS" %}
+{% set version = "1.4.0" %}
+{% set sha256 = "bc0adb7a204d57c603d145f687facb0dd939488f2309c6b3031ffecce6f520e0" %}
+
 package:
-  name: aquamis
-  version: 1.3.7
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
  
 source:
-  url: https://gitlab.com/bfr_bioinformatics/AQUAMIS/-/archive/v1.3.7/AQUAMIS-v1.3.7.tar.gz
-  sha256: fed3ed1ec5c6cc5b53af2c7b2d967dc974986b5faeb9e291ee6a2a91857fb223
+  url: https://gitlab.com/bfr_bioinformatics/{{ name }}/-/archive/v{{ version }}/{{ name }}-v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
 
 build:
   number: '0'
   noarch: generic 
+  run_exports:
+    - {{ pin_subpackage('aquamis', max_pin="x.x") }}
 
 requirements:
   run:
-    - python>=3.7
-    - snakemake-minimal>=6.0.0
-    - pandas>=1.2.3
-    - pyyaml>=5.4.1
-    - biopython>=1.78
-    - fastp>=0.20.1
-    - shovill>=1.1.0
-    - kmc=3.1.0
-    - confindr>=0.7.4
-    - quast>=5.0.2
-    - mash>=2.3
-    - kraken2>=2.1.1
-    - taxonkit>=0.6.2
-    - bracken>=2.6.0
-    - mlst>=2.19.0
-    - numpy>=1.19
-    - genson>=1.2.2
-    - cerberus>=1.3.2
-    - jsonschema>=3.2
-    - r-base=3.6.3
-    - r-tidyverse=1.3.0
-    - r-rrapply=1.2.2
-    - r-urltools=1.7.3
-    - r-dt>=0.16
-    - r-rmarkdown<=2.7
-    - r-knitr>=1.31
-    - pandoc=2.11
-
+    - python =3.7
+    - snakemake-minimal =7
+    - pandas >=1.3.5
+    - numpy >=1.21
+    - pyyaml >=6
+    - genson >=1.2.2
+    - cerberus >=1.3.4
+    - jsonschema >=4.17
+    - fastp >=0.23.2
+    - confindr =0.7.4
+    - biopython >=1.79
+    - bbmap >=39
+    - kma >=1.2
+    - kraken2 >=2.1.3
+    - blast >=2.14
+    - entrez-direct >=16.2
+    - taxonkit >=0.15
+    - bracken >=2.8
+    - mash >=2.3
+    - shovill >=1.1.0
+    - kmc >=3.2.1
+    - trimmomatic >=0.39
+    - bwa >=0.7.17
+    - spades >=3.15
+    - seqtk >=1.4
+    - samtools >=1.12
+    - pilon >=1.24
+    - quast >=5.2.0
+    - circos >=0.69.9
+    - minimap2 >=2.26
+    - mlst >=2.23
+    - perl-bio-tools-run-alignment-tcoffee =1.7.4=pl5321hdfd78af_4
+    - r-base =4.0
+    - r-tidyverse >=1.3.2
+    - r-rrapply >=1.2.5
+    - r-urltools >=1.7.3
+    - r-dt >=0.25
+    - r-rmarkdown >=2.16
+    - r-knitr >=1.40
+    - pandoc >=2.19
+    - tzdata
 
 about:
   home: https://gitlab.com/bfr_bioinformatics/AQUAMIS
@@ -49,6 +68,8 @@ about:
 
 test: 
   commands:
-    - aquamis -h
+    - aquamis --help
     - create_sampleSheet.sh --help
-    - aquamis_setup.sh --help 
+    - create_pass_samplesheet.sh --help
+    - aquamis_setup.sh --help
+    - aquamis_wrapper.sh --help
diff --git a/recipes/aragorn/meta.yaml b/recipes/aragorn/meta.yaml
index b2936b72349f6..8292bad9d714a 100644
--- a/recipes/aragorn/meta.yaml
+++ b/recipes/aragorn/meta.yaml
@@ -7,7 +7,9 @@ source:
   url: http://www.ansikte.se/ARAGORN/Downloads/aragorn1.2.41.c
 
 build:
-  number: 1
+  number: 2
+  run_exports:
+    - {{ pin_subpackage("aragorn", max_pin="x.x.x") }}  
 
 requirements:
   build:
@@ -21,3 +23,7 @@ about:
   home: http://www.ansikte.se/ARAGORN/
   license: GPLv3
   summary: 'ARAGORN, tRNA (and tmRNA) detection'
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/arborator/meta.yaml b/recipes/arborator/meta.yaml
new file mode 100644
index 0000000000000..23fe634945fa5
--- /dev/null
+++ b/recipes/arborator/meta.yaml
@@ -0,0 +1,51 @@
+{% set name = "arborator" %}
+{% set version = "1.0.0" %}
+{% set sha256 = "682f022481203da36368e46942213767068ecdb4fae4d0ab7580d8556d961d0e" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/arborator-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+  
+
+build:
+  number: 1
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+  script: {{ PYTHON }} -m pip install . --use-pep517 --no-deps -vvv
+  entry_points:
+    - arborator=arborator.main:main
+
+requirements:
+  host:
+    - python >=3.8,<3.10
+    - pip
+  run:
+    - python >=3.8,<3.10
+    - {{ pin_compatible('numpy', max_pin="x") }}
+    - pyarrow ==12.0.0
+    - pandas ==2.0.2
+    - scipy >=1.0.0
+    - numba ==0.57.1
+    - pytables
+    - psutil
+    - six
+    - profile_dists
+    - genomic_address_service
+
+
+test: 
+  commands:
+    - arborator -h
+
+about:
+  home: 'https://pypi.org/project/arborator/'
+  summary: 'Arborator: Simplifying operationalized pathogen surveillance and outbreak detection'
+  license: Apache-2.0
+  license_file: LICENSE
+  dev_url: 'https://github.com/phac-nml/arborator'
+
diff --git a/recipes/arcas-hla/meta.yaml b/recipes/arcas-hla/meta.yaml
index fa98f4d095d42..c1508a625042b 100644
--- a/recipes/arcas-hla/meta.yaml
+++ b/recipes/arcas-hla/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.5.0" %}
+{% set version = "0.6.0" %}
 
 package:
   name: arcas-hla
@@ -6,26 +6,31 @@ package:
 
 source:
   url: https://github.com/RabadanLab/arcasHLA/archive/v{{ version }}.tar.gz
-  sha256: fb17b3ba74facf4edb3329099b158910bdc7c4e73074efab9880d4136a0d4e93
+  sha256: 75bef1a5596a9dfabccb901420f5d852d6d8a15d9c676e4c94787b8d25dd708b
 
 build:
-  number: 3
+  number: 1
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage("arcas-hla", max_pin="x.x") }}
 
 requirements:
   run:
+    - bedtools
+    - biopython
     - coreutils
-    - bedtools >=2.27.1
-    - biopython <=1.77
     - git
     - git-lfs
-    - kallisto ==0.44.0
+    - kallisto ==0.50.1
     - numpy
     - pandas
     - pigz
-    - python >=3.6.1
-    - samtools >=1.9
-    - scipy ==1.1.0
+    - pip
+    - pyarrow
+    - pytest
+    - python
+    - samtools
+    - scipy
 
 test:
   commands:
@@ -33,10 +38,11 @@ test:
 
 about:
   home: https://github.com/RabadanLab/arcasHLA
-  license: GPL-3.0
-  summary: high resolution HLA typing from RNA seq
+  license: GPL-3.0-only
+  license_file: LICENSE
+  summary: high-resolution HLA typing from RNA seq
   description: |
-    arcasHLA performs high resolution genotyping for HLA class I and class II
+    arcasHLA performs high-resolution genotyping for HLA class I and class II
     genes from RNA sequencing, supporting both paired and single-end samples.
 
 extra:
diff --git a/recipes/architeuthis/meta.yaml b/recipes/architeuthis/meta.yaml
new file mode 100644
index 0000000000000..6ef0a4385567a
--- /dev/null
+++ b/recipes/architeuthis/meta.yaml
@@ -0,0 +1,44 @@
+{% set name = "architeuthis" %}
+{% set version = "0.2.1" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/cdiener/{{ name }}/archive/{{ version }}.tar.gz
+  sha256: af522d822ed2dcf3bc386c8cb5ea42772ade1826b998ca0f1cd1d825f1a114ab
+
+build:
+  number: 0
+  script:
+    - go build -v -ldflags "-w -s -X 'main.version={{ version }}'" -o $PREFIX/bin/architeuthis
+  run_exports:
+    - {{ pin_subpackage('architeuthis', max_pin="x.x") }}
+
+requirements:
+  build:
+    - {{ compiler('go') }}
+  run:
+    - taxonkit >=0.16.0
+
+test:
+  commands:
+    - architeuthis -v
+
+about:
+  home: https://github.com/cdiener/{{ name }}
+  license: Apache-2.0
+  license_file: LICENSE
+  summary: Tool to analyze and summarize data for Kraken.
+  description: |
+    architeuthis is a fast standalone command to supplement the Kraken suite of software
+    tools such like Kraken2, KrakenUniq, and Bracken. I saw myself repeatedly rewriting
+    the same code in my pipelines when dealing with Kraken output, like merging files or
+    maninpulating lineage annotations. It also adds some functionality to dive deeper
+    into the individual k-mer classifications for reads.
+  dev_url: https://github.com/cdiener/architeuthis.git
+
+extra:
+  recipe-maintainers:
+    - cdiener
\ No newline at end of file
diff --git a/recipes/arcs/meta.yaml b/recipes/arcs/meta.yaml
index e7a813f95e16c..761927d7f9309 100644
--- a/recipes/arcs/meta.yaml
+++ b/recipes/arcs/meta.yaml
@@ -1,15 +1,17 @@
-{% set version = "1.2.5" %}
+{% set version = "1.2.7" %}
 
 package:
   name: arcs
   version: {{ version }}
 
 build:
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('arcs', max_pin="x") }}
 
 source:
   url: https://github.com/bcgsc/arcs/releases/download/v{{ version }}/arcs-{{ version }}.tar.gz
-  sha256: 9bf0fc0f2da748356339ce3a89edbffc5b63804cb3680829391365bb7de8ca39 
+  sha256: 3162cff3286a033b494ace8050abc96d4083f846cafe921bb0122170f705eca8
 
 requirements:
   build:
@@ -19,11 +21,10 @@ requirements:
     - boost-cpp
     - sparsehash
     - zlib
-    - llvm-openmp # [osx]
+    - llvm-openmp  # [osx]
     - btllib
   run:
-    - zlib
-    - llvm-openmp # [osx]
+    - llvm-openmp  # [osx]
     - make
 
 test:
@@ -33,6 +34,7 @@ test:
 
 about:
   home: https://github.com/bcgsc/arcs
-  license: GPL-3.0
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: '{{ environ["RECIPE_DIR"] }}/LICENSE'
-  summary: Scaffolding genome sequence assemblies using linked or long reads 
+  summary: Scaffolding genome sequence assemblies using linked or long reads
diff --git a/recipes/arcsv/build.sh b/recipes/arcsv/build.sh
new file mode 100644
index 0000000000000..155ddc813a42b
--- /dev/null
+++ b/recipes/arcsv/build.sh
@@ -0,0 +1,26 @@
+      mkdir -p $PREFIX/bin
+      ls $PREFIX/bin/
+     cp script/ArcSV $PREFIX/bin/
+     cp script/BKinCheck.pl $PREFIX/bin/
+     cp script/BKinCheck_len.pl $PREFIX/bin/
+     cp script/bed2pos $PREFIX/bin/
+     cp script/build_env_setup.sh $PREFIX/bin/
+     cp script/conda_build.sh $PREFIX/bin/
+     cp script/createClip.sh $PREFIX/bin/
+     cp script/extractBK_bam.sh $PREFIX/bin/
+     cp script/extractSoftclipped $PREFIX/bin/
+     cp script/fastqToBKS.pl $PREFIX/bin/
+     cp script/filter_PopSpec_AF.sh $PREFIX/bin/
+     cp script/find_record.sh $PREFIX/bin/
+     cp script/format_header.txt $PREFIX/bin/
+     cp script/gen_pop_bed.sh $PREFIX/bin/
+     cp script/generateBKSinArc.sh $PREFIX/bin/
+     cp script/generateBKSinArc_each.sh $PREFIX/bin/
+     cp script/generateBKSinBam.pl $PREFIX/bin/
+     cp script/generateBKSinBam.sh $PREFIX/bin/
+     cp script/generateBKSinBam_each.sh $PREFIX/bin/
+     cp script/getSoftclippedAndNearbySeq.py $PREFIX/bin/
+     cp script/getfastq.sh $PREFIX/bin/
+     cp script/pos2bed $PREFIX/bin/
+     cp script/transDeepMEI2BK.sh $PREFIX/bin/
+     chmod +x $PREFIX/bin/*
diff --git a/recipes/coatran/LICENSE b/recipes/arcsv/license.txt
similarity index 100%
rename from recipes/coatran/LICENSE
rename to recipes/arcsv/license.txt
diff --git a/recipes/arcsv/meta.yaml b/recipes/arcsv/meta.yaml
new file mode 100644
index 0000000000000..18f0528c9c4b1
--- /dev/null
+++ b/recipes/arcsv/meta.yaml
@@ -0,0 +1,28 @@
+package:
+  name: arcsv
+  version: 1.0.2
+
+source:
+  url: https://raw.githubusercontent.com/xuxif/ArcSV/main/archive/arcsv.tar.gz
+  sha256: 118b898af3fcb0618ccbd924728ee2ac520a23d75ee042dfdc86dfe1bf3276af
+build:
+  noarch: generic
+  number: 0
+  
+
+requirements:
+  run:
+    # List dependencies here. e.g.:
+    # ... any other dependencies 
+    - samtools
+    - bcftools
+    - bedtools
+test:
+  commands:
+    - ArcSV detect 
+
+about:
+  home: https://github.com/xuxif/ArcSV
+  license: GPL-3.0
+  license_file: license.txt
+  summary: A pipeline to detect SV in archaic human
diff --git a/recipes/argnorm/meta.yaml b/recipes/argnorm/meta.yaml
new file mode 100644
index 0000000000000..0b5d31ed0e52b
--- /dev/null
+++ b/recipes/argnorm/meta.yaml
@@ -0,0 +1,52 @@
+{% set name = "argnorm" %}
+{% set version = "0.3.0" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: 32ae41d1c099558b3257f88dd5ff34e70614646dec5bbf6fd7e0b30f816a5f57
+
+build:
+  noarch: python
+  number: 0
+  entry_points:
+    - argnorm=argnorm.cli:main
+  script: "{{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation"
+  run_exports:
+    - {{ pin_subpackage('argnorm', max_pin='x') }}
+requirements:
+  host:
+    - pandas
+    - pip
+    - pronto >=2.5.6
+    - pytest
+    - python >=3.7
+    - setuptools
+  run:
+    - pandas
+    - pronto >=2.5.6
+    - pytest
+    - python >=3.7
+    - setuptools
+
+test:
+  imports:
+    - argnorm
+    - argnorm.data
+  commands:
+    - argnorm --help
+
+about:
+  home: "https://github.com/BigDataBiology/argNorm"
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "Normalize antibiotic resistance genes (ARGs) abundance tables (e.g., from metagenomics) by using the ARO ontology (developed by CARD)."
+  doc_url: https://argnorm.readthedocs.io/en/latest/
+
+extra:
+  recipe-maintainers:
+    - Vedanth-Ramji
diff --git a/recipes/args_oap/meta.yaml b/recipes/args_oap/meta.yaml
index 3b590862f73d1..b1ba2e9244fda 100644
--- a/recipes/args_oap/meta.yaml
+++ b/recipes/args_oap/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "args_oap" %}
-{% set version = "3.2.3" %}
+{% set version = "3.2.4" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: https://github.com/xinehc/args_oap/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: cadde1bda8d4a9c16fb36cc0d7a1202a6aa15ac94cd4caf496bea2bbb5bc6477
+  sha256: de53ff4a1a69b2c225389586284ca977814420692f12aba6d3692228d808c5aa
 
 build:
   noarch: python
   number: 0
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage('args_oap', max_pin='x.x') }}
 
 requirements:
   host:
@@ -41,4 +43,4 @@ about:
 extra:
   recipe-maintainers:
     - xiaole99
-    - xinehc
+    - xinehc
\ No newline at end of file
diff --git a/recipes/artic/meta.yaml b/recipes/artic/meta.yaml
index 447e7d20a3806..59642e631a4cb 100644
--- a/recipes/artic/meta.yaml
+++ b/recipes/artic/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "artic" %}
-{% set version = "1.2.3" %}
-{% set sha256 = "92ddaf38c46681299b22ac91b4b64ec57c6d2965ea3886620fa9348398204506" %}
+{% set version = "1.2.4" %}
+{% set sha256 = "981219a49cec01dc82a9375b16f844278e797ad4034efa1eaa410ccb1849c617" %}
 
 package:
   name: {{ name|lower }}
@@ -10,8 +10,10 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 0
+  number: 1
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('artic', max_pin='x.x') }}
   script: python -m pip install --ignore-installed .
   entry_points:
     - artic=artic.pipeline:main
@@ -32,29 +34,31 @@ requirements:
     - python >=3
     - pip
   run:
-    - artic-porechop =0.3.2pre
-    - artic-tools =0.2.6
-    - longshot =0.4.5
-    - bcftools =1.15.1
-    - biopython =1.79
-    - bwa =0.7.17
-    - clint =0.5.1
-    - htslib =1.15.1
-    - medaka >=1.6.1
-    - minimap2 =2.24
-    - multiqc =1.13
+    - python
+    - artic-porechop >=0.3.2pre
+    - artic-tools
+    - longshot
+    - bcftools
+    - biopython
+    - bwa
+    - clint
+    - htslib
+    - medaka >=1.10.0
+    - minimap2 >=2.26
+    - multiqc
     - muscle =3.8
-    - nanopolish =0.14.0
-    - pandas =1.4.4
+    - nanopolish >=0.14.0
+    - pandas
     - pip
     - pysam
-    - pytest =7.1.3
-    - python =3.8.13
-    - pyvcf =0.6.8
-    - pyfaidx =0.6.0
-    - requests =2.28
-    - samtools =1.15
-    - tqdm =4.64
+    - pytest 
+    - pyvcf
+    - pyfaidx =0.6.0 # DO NOT CHANGE THIS PIN UNDER ANY CIRCUMSTANCES, IT WILL BREAK THE PIPELINE
+    - requests
+    - samtools
+    - tqdm
+    - keras-preprocessing >=1.1.2
+
 
 test:
   commands:
diff --git a/recipes/arvados-cwl-runner/meta.yaml b/recipes/arvados-cwl-runner/meta.yaml
index 9765f2fa7d1f7..ff574dc899430 100644
--- a/recipes/arvados-cwl-runner/meta.yaml
+++ b/recipes/arvados-cwl-runner/meta.yaml
@@ -1,15 +1,17 @@
-{% set version="2.0.4" %}
+{% set version="2.7.0" %}
 package:
   name: arvados-cwl-runner
   version: {{ version }}
 
 source:
   url: https://pypi.io/packages/source/a/arvados-cwl-runner/arvados-cwl-runner-{{ version }}.tar.gz
-  sha256: 9caa404604f7d9ccc0f2e3fe6e09a39ce3ee1c2115a07b4a29070dd033b78707
+  sha256: 56ef085f06e33ee0d4bead6dc5be03d47cc04d6fbde78b8798bd42d38a0352af
 
 build:
   noarch: python
   number: 0
+  run_exports:
+    - {{ pin_subpackage("arvados-cwl-runner", max_pin="x.x") }}
 
 requirements:
   host:
@@ -18,10 +20,9 @@ requirements:
   run:
     - python
     - ruamel.yaml >=0.15.54
-    # cwltools>=3.0.20200530110633 moved cwltool.pathmapper.get_listing to cwltool.utils.get_listing
-    - cwltool >=1.0.20181217162649,<3.0.20200530110633
+    - cwltool >=3.1
     - schema-salad >=3.0.20181129082112
-    - arvados-python-client >=1.3.1.20190301150258
+    - arvados-python-client >=2.6
 
 test:
   imports:
diff --git a/recipes/arvados-python-client/meta.yaml b/recipes/arvados-python-client/meta.yaml
index a1636583d9bc6..d651b2f31f9ae 100644
--- a/recipes/arvados-python-client/meta.yaml
+++ b/recipes/arvados-python-client/meta.yaml
@@ -1,4 +1,4 @@
-{% set version="2.6.3" %}
+{% set version = "2.7.3" %}
 
 package:
   name: arvados-python-client
@@ -6,11 +6,13 @@ package:
 
 source:
   url: https://pypi.io/packages/source/a/arvados-python-client/arvados-python-client-{{ version }}.tar.gz
-  sha256: fc6acbaecf35229a40737babbe82695c05a53e6c778e16d837419a4ef4c3e1be
+  sha256: 9ef9050ce680832bff76f8d283e3b445252f21ee927b2b63949271fe9b2a4bc2
 
 build:
   noarch: python
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('arvados-python-client', max_pin="x") }}
 
 requirements:
   host:
@@ -45,7 +47,7 @@ about:
   description: |
      Python API for Arvados, an open source platform for managing and
      analyzing biomedical big data
-  license_file: LICENSE-2.0.txt 
+  license_file: LICENSE-2.0.txt
 
 extra:
   skip-lints:
diff --git a/recipes/asciigenome/meta.yaml b/recipes/asciigenome/meta.yaml
index baee0a3f676a9..78b047a743afc 100644
--- a/recipes/asciigenome/meta.yaml
+++ b/recipes/asciigenome/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "1.17.0" %}
-{% set sha256 = "ca241260074348fd0e7b11e7720041ea6b9679e6880689a3b69c0511b6761334" %}
+{% set version = "1.18.0" %}
+{% set sha256 = "e505f3551cd53dbe1cee82ef85e515ec9f80e60ab4e7bae462c43e37f415411e" %}
 
 package:
   name: asciigenome
@@ -12,6 +12,8 @@ source:
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('asciigenome', max_pin="x") }}
 
 requirements:
   run:
@@ -28,3 +30,4 @@ about:
   summary: Command-line genome browser running from terminal window and solely based
     on ASCII characters
   license_family: MIT
+  doc_url: https://asciigenome.readthedocs.io/en/latest/
diff --git a/recipes/ashlar/meta.yaml b/recipes/ashlar/meta.yaml
index 56f3226e440d9..0f70c9431a7f1 100644
--- a/recipes/ashlar/meta.yaml
+++ b/recipes/ashlar/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "ashlar" %}
-{% set version = "1.17.0" %}
+{% set version = "1.18.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,31 +7,34 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 3c4fb3a2d1ffee986f86c633d12f753544904ddccbd8499851badbdeec3142be
+  sha256: 2c0e8997a49daf64fc56b3afabc2e58a0eb2f6f9985d0c3c22be957bf8b03760
 
 build:
   number: 0
   entry_points:
     - ashlar=ashlar.scripts.ashlar:main
-  script: "{{ PYTHON }} -m pip install . -vv"
+    - preview_slide=ashlar.scripts.preview_slide:main
+    - make_alignment_movie=ashlar.scripts.make_alignment_movie:main
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('ashlar', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - python
+    - python <3.12
   run:
     - blessed >=1.17
     - matplotlib-base >=3.1.2
     - networkx >=2.4
     - numpy >=1.18.1
-    - pip
     - pyjnius >=1.2.1
-    - python
+    - python <3.12
     - scikit-image ==0.19
     - scikit-learn >=0.21.1
     - scipy >=1.4.1
-    - tifffile>=2022.4.8
+    - tifffile >=2022.4.8
     - zarr
 
 test:
@@ -44,6 +47,8 @@ test:
 about:
   home: "https://github.com/sorgerlab/ashlar"
   license: MIT
+  license_family: MIT
+  license_file: LICENSE
   summary: "Alignment by Simultaneous Harmonization of Layer/Adjacency Registration"
   doc_url: https://labsyspharm.github.io/ashlar/
 
diff --git a/recipes/aspera-cli/build.sh b/recipes/aspera-cli/build.sh
new file mode 100644
index 0000000000000..37603d593282b
--- /dev/null
+++ b/recipes/aspera-cli/build.sh
@@ -0,0 +1,33 @@
+#!/usr/bin/env bash
+
+set -o xtrace -o nounset -o pipefail -o errexit
+
+export GEM_HOME=$PREFIX/share/rubygems
+mkdir -p $GEM_HOME
+gem build aspera-cli.gemspec
+gem install --install-dir $GEM_HOME --bindir $GEM_HOME/bin ${PKG_NAME}-${PKG_VERSION}.gem
+gem_path=$GEM_HOME/gems/${PKG_NAME}-${PKG_VERSION}
+cp -r $SRC_DIR/* $gem_path
+rm $gem_path/{conda_build,build_env_setup}.sh
+tail -n+3 bin/ascli > $gem_path/bin/ascli
+tail -n+3 bin/asession > $gem_path/bin/asession
+
+cat << EOF > header.txt
+#!/bin/sh
+# -*- ruby -*-
+_=_\\
+=begin
+exec "$PREFIX/bin/ruby" "-x" "\$0" "\$@"
+=end
+#!$PREFIX/bin/ruby
+EOF
+
+echo "$(cat header.txt $gem_path/bin/ascli)" > $gem_path/bin/ascli
+echo "$(cat header.txt $gem_path/bin/asession)" > $gem_path/bin/asession
+
+ln -s $gem_path/bin/* $PREFIX/bin
+
+export ASCLI_HOME="$PREFIX/etc/aspera"
+ascli conf ascp install && ascli config ascp info 
+cp $ASCLI_HOME/aspera-license .
+ln -s $ASCLI_HOME/{ascp,aspera-license} $PREFIX/bin
\ No newline at end of file
diff --git a/recipes/aspera-cli/meta.yaml b/recipes/aspera-cli/meta.yaml
new file mode 100644
index 0000000000000..1004a29c34209
--- /dev/null
+++ b/recipes/aspera-cli/meta.yaml
@@ -0,0 +1,42 @@
+{% set name = "aspera-cli" %}
+{% set version = "4.14.0" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  - url: https://github.com/IBM/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+    sha256: b46df368df71ad926605e85ea4b61b9e48335cce8be31ac04d97ee6f71109f03
+
+build:
+  noarch: generic
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('aspera-cli', max_pin="x") }}
+
+requirements:
+  build:
+    - ruby >=3
+  host:
+    - ruby >=3
+  run:
+    - ruby >=3
+
+test:
+  commands:
+    - ascli -h
+    - ascp -h
+
+about:
+  home: https://github.com/IBM/aspera-cli
+  license: Apache-2.0
+  license_file: 
+    - LICENSE
+    - aspera-license
+  summary: "Command Line Interface for IBM Aspera products"
+  dev_url: https://github.com/IBM/aspera-cli
+
+extra:
+  recipe-maintainers:
+    - farchaab
diff --git a/recipes/asqcan/meta.yaml b/recipes/asqcan/meta.yaml
index 09523b561be60..fb38baa5c311a 100644
--- a/recipes/asqcan/meta.yaml
+++ b/recipes/asqcan/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.2" %}
+{% set version = "0.4" %}
 
 package:
   name: asqcan
@@ -6,21 +6,27 @@ package:
 
 source:
   url: https://github.com/bogemad/asqcan/archive/v{{ version }}.tar.gz
-  md5: e48ddb45c709cf4850fd2a2bb96e4af0
+  sha256: d0abbba258f63ceeda73b71620c5cadd15ba15919df936c2b4b6e2fc87ceaafb
 
 build:
   noarch: python
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("asqcan", max_pin="x.x") }}
   script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
 
 requirements:
   host:
-    - python <3
+    - python
     - pip
   run:
-    - python <3
+    - python
+    - requests
+    - bwa
+    - samtools
+    - diamond
     - parallel
-    - fastqc
+    - fastp
     - spades
     - quast
     - blobtools
@@ -33,6 +39,6 @@ test:
 
 about:
   home: https://github.com/bogemad/asqcan
-  license: GPLv3
+  license: GPL-3.0-only
   summary: 'A combined pipeline for bacterial genome assembly, quality control and annotation'
   license_family: GPL
diff --git a/recipes/assembly-stats/meta.yaml b/recipes/assembly-stats/meta.yaml
index 482798649fd68..9513521d7e277 100644
--- a/recipes/assembly-stats/meta.yaml
+++ b/recipes/assembly-stats/meta.yaml
@@ -12,8 +12,10 @@ source:
     - 0001-Fix-macOS-compilation.patch
 
 build:
-  number: 7
-
+  number: 8
+  run_exports:
+    - {{ pin_subpackage("assembly-stats", max_pin="x") }}  
+    
 requirements:
   build:
     - make
@@ -30,3 +32,6 @@ about:
   home: https://github.com/sanger-pathogens/assembly-stats
   license: GPL-3.0
   summary: 'Get assembly statistics from FASTA and FASTQ files'
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/assembly_finder/meta.yaml b/recipes/assembly_finder/meta.yaml
new file mode 100644
index 0000000000000..5abfbc3b3caa9
--- /dev/null
+++ b/recipes/assembly_finder/meta.yaml
@@ -0,0 +1,54 @@
+{% set name = "assembly_finder" %}
+{% set version = "0.7.4" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://github.com/metagenlab/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: a883ea2ac4b70960bdd260de69fb53a33b52ec1fe0d975572fce5f45a7ebdfc4
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - assembly_finder=assembly_finder.__main__:main
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  run_exports:
+    - {{ pin_subpackage('assembly_finder', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.10
+    - pip
+  run:
+    - python >=3.10
+    - snakemake-minimal >=7.32.4
+    - pulp <2.8
+    - snaketool-utils >=0.0.4
+    - attrmap >=0.0.7
+    - pyyaml >=6.0
+    - pandas >=2.2.1
+    - rich-click >=1.7.4
+
+test:
+  commands:
+    - assembly_finder -h
+    - assembly_finder -v
+
+about:
+  home: https://github.com/metagenlab/assembly_finder
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "Snakemake-powered cli pipeline to download genomes with NCBI datasets"
+  dev_url: https://github.com/metagenlab/assembly_finder
+  doc_url: https://metagenlab.github.io/assembly_finder
+
+extra:
+  container:
+    extended-base: true
+  recipe-maintainers:
+    - farchaab
+    - tpillone
diff --git a/recipes/assemblycomparator2/build.sh b/recipes/assemblycomparator2/build.sh
new file mode 100644
index 0000000000000..1c97f51cd74b7
--- /dev/null
+++ b/recipes/assemblycomparator2/build.sh
@@ -0,0 +1,20 @@
+#!/usr/bin/env bash
+
+
+# First we put the necessary files in into the conda prefix directory:
+mkdir -p ${PREFIX}/assemblycomparator2
+cp asscom2 snakefile config.yaml LICENSE ${PREFIX}/assemblycomparator2
+cp -r assets conda_definitions profiles report_subpipeline scripts tests ${PREFIX}/assemblycomparator2
+
+# This is the binary that we wish to be able to run.
+mkdir -p ${PREFIX}/bin
+ln -s ${PREFIX}/assemblycomparator2/asscom2 ${PREFIX}/bin/asscom2
+
+
+# # I hope these variables are accessible when the user activates the environment that runs ac2.
+# ASSCOM2_BASE=$PREFIX
+# ASSCOM2_PROFILE=${ASSCOM2_BASE}/profiles/apptainer/local
+# ASSCOM2_DATABASES=${ASSCOM2_BASE}/databases # The user should override this in their .bashrc if they want to use a different dir.
+
+# # I think it is better to use backslash-sentinel, because then the user can change the variables after having activated the PREFIX environment, and the changes will have effect
+# alias asscom2='snakemake --snakefile \${ASSCOM2_BASE}/snakefile --profile \${ASSCOM2_PROFILE} --configfile \${ASSCOM2_BASE}/config.yaml'
diff --git a/recipes/assemblycomparator2/meta.yaml b/recipes/assemblycomparator2/meta.yaml
new file mode 100644
index 0000000000000..cc2844dfddf15
--- /dev/null
+++ b/recipes/assemblycomparator2/meta.yaml
@@ -0,0 +1,40 @@
+{% set version = "2.6.2" %}
+
+package:
+  name: assemblycomparator2
+  version: {{ version }}
+
+source:
+  url: https://github.com/cmkobel/assemblycomparator2/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 52d1465c0da1955ee58848043309db81e551a87428e8b10fc55c02437addf6b8
+
+
+build:
+  number: 0
+  run_exports:
+    - asscom2
+  skip: True # [osx]
+
+requirements:
+  run:
+    - snakemake =7.32.4
+    - mamba >=1.4.9 # Necessary for snakemake to install child environments during development.
+
+
+test:
+  commands:
+    - touch dummy.fa; asscom2 --help
+    
+
+about:
+  home: https://github.com/cmkobel/assemblycomparator2
+  summary: 'assemblycomparator2: Compare prokaryotic genomic assemblies'
+  license_family: GPL
+  license: GPL-3.0
+  license_file: LICENSE
+extra:
+  skip-lints:
+    - should_be_noarch_generic
+  recipe-maintainers:
+    - cmkobel
+
diff --git a/recipes/aster/activate.sh b/recipes/aster/activate.sh
new file mode 100644
index 0000000000000..8b7e185b7e5ce
--- /dev/null
+++ b/recipes/aster/activate.sh
@@ -0,0 +1,3 @@
+export OLD_LD_LIBRARY_PATH=${LD_LIBRARY_PATH}
+export LD_LIBRARY_PATH=${CONDA_PREFIX}/lib/:${LD_LIBRARY_PATH}
+export SINGULARITYENV_LD_LIBRARY_PATH=${LD_LIBRARY_PATH}
\ No newline at end of file
diff --git a/recipes/aster/build.sh b/recipes/aster/build.sh
index 786e3a99cae85..0dbd5f0bcda22 100644
--- a/recipes/aster/build.sh
+++ b/recipes/aster/build.sh
@@ -1,6 +1,13 @@
 #!/bin/bash
 
-sed -i.bak1 's/-march=native/-march=x86-64 -mtune=generic/g' makefile
+for CHANGE in "activate" "deactivate"
+do
+    mkdir -p "${PREFIX}/etc/conda/${CHANGE}.d"
+    cp "${RECIPE_DIR}/${CHANGE}.sh" "${PREFIX}/etc/conda/${CHANGE}.d/${PKG_NAME}_${CHANGE}.sh"
+done
+if [ `uname -m` != "aarch64" ]; then
+	sed -i.bak1 's/-march=native/-march=x86-64 -mtune=generic/g' makefile
+fi
 if [ "$(uname)" == "Darwin" ];
 then
     sed -i.bak2 's/g++/${CXX}/g' makefile
diff --git a/recipes/aster/deactivate.sh b/recipes/aster/deactivate.sh
new file mode 100644
index 0000000000000..3b8e36f330814
--- /dev/null
+++ b/recipes/aster/deactivate.sh
@@ -0,0 +1,3 @@
+export LD_LIBRARY_PATH=${OLD_LD_LIBRARY_PATH}
+unset OLD_LD_LIBRARY_PATH
+unset SINGULARITYENV_LD_LIBRARY_PATH
\ No newline at end of file
diff --git a/recipes/aster/meta.yaml b/recipes/aster/meta.yaml
index 74e9391b7ffa2..19c285b795681 100644
--- a/recipes/aster/meta.yaml
+++ b/recipes/aster/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.15" %}
+{% set version = "1.16" %}
 {% set name = "ASTER" %}
-{% set sha256 = "71618824a0f39135977709f21f3b6374815407411fb44474442a1a9c88a6c919" %}
+{% set sha256 = "c6e80de483a0a59fc0d3a74465b1f793e773b9d79cbd20756c6766136ffbb1a7" %}
 
 package:
   name: "{{ name|lower }}"
@@ -8,6 +8,8 @@ package:
 
 build:
   number: 2
+  run_exports:
+    - {{ pin_subpackage('aster', max_pin="x") }}
 
 source:
   url: "https://github.com/chaoszhang/ASTER/archive/refs/tags/v{{ version }}.tar.gz"
@@ -20,16 +22,21 @@ requirements:
 
 test:
   commands:
-    - master-site -h &> /dev/null # [linux]
-    - master-pair -h &> /dev/null # [linux]
+    - caster-site -h &> /dev/null # [linux]
+    - caster-pair -h &> /dev/null # [linux]
+    - waster-site -h &> /dev/null # [linux]
     - astral -h &> /dev/null
     - astral-pro -h &> /dev/null
     - astral-hybrid -h &> /dev/null
 
 about:
   home: https://github.com/chaoszhang/ASTER
-  license: AGPL-3.0
+  license: AGPL-3.0-or-later
+  license_family: AGPL
   license_file: LICENSE
   summary: |
     Accurate Species Tree EstimatoR series; a family of optimation algorithms
     for species tree inference implemented in C++
+extra:
+  additional-platforms:
+    - linux-aarch64    
diff --git a/recipes/astral-tree/astral.py b/recipes/astral-tree/astral.py
index f1b2e7421c1e6..2feff928efad7 100755
--- a/recipes/astral-tree/astral.py
+++ b/recipes/astral-tree/astral.py
@@ -76,24 +76,6 @@ def jvm_opts(argv):
     return (mem_opts, prop_opts, pass_args, exec_dir)
 
 
-def def_temp_log_opts(args):
-    """
-    Establish default temporary and log folders.
-    """
-    TEMP  = os.getenv("TEMP")
-
-    if TEMP is not None:
-        if '-log' not in args:
-            args.append('-log')
-            args.append(TEMP+'/logs')
-
-        if '-temp_folder' not in args :
-            args.append('-temp_folder')
-            args.append(TEMP)
-
-    return args
-
-
 def main():
     java = java_executable()
     """
@@ -104,7 +86,6 @@ def main():
     we copy the jar file, lib, and resources to the exec_dir directory.
     """
     (mem_opts, prop_opts, pass_args, exec_dir) = jvm_opts(sys.argv[1:])
-    pass_args = def_temp_log_opts(pass_args)
     jar_dir = exec_dir if exec_dir else real_dirname(sys.argv[0])
 
     if pass_args != [] and pass_args[0].startswith('eu'):
diff --git a/recipes/astral-tree/meta.yaml b/recipes/astral-tree/meta.yaml
index b3d9ae6d5b750..1def11046b60e 100644
--- a/recipes/astral-tree/meta.yaml
+++ b/recipes/astral-tree/meta.yaml
@@ -1,15 +1,17 @@
 # Do not forget to update the version string in the astral_wrapper.py file
 {% set name = "Astral" %}
 {% set version = "5.7.8" %}
-{% set sha256 = "7284f3f86d4824fb8b80a999f7495245961f2c62943c96c8ad9d626759f65b4e" %}
+{% set sha256 = "7b3d89ca4fee42b00e547ed2485e60bebfdf7f0179cfc503f0c522d682483dea" %}
 
 package:
   name: {{ name|lower }}-tree
   version: {{ version }}
 
 build:
-  number: 0
+  number: 1
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('astral-tree', max_pin="x") }}
 
 source:
   url: https://github.com/smirarab/ASTRAL/raw/master/{{ name }}.{{ version }}.zip
diff --git a/recipes/atac/build.sh b/recipes/atac/build.sh
index b4a949f10528c..bcc44e6a711ac 100644
--- a/recipes/atac/build.sh
+++ b/recipes/atac/build.sh
@@ -3,8 +3,11 @@ make \
     CC="${CC} ${CFLAGS} ${CPPFLAGS}" \
     CXX="${CXX} ${CXXFLAGS} ${CPPFLAGS} -std=c++03" \
     CLDFLAGS="${LDFLAGS}" \
-    CXXLDFLAGS="${LDFLAGS}" \
-    install
+    CXXLDFLAGS="${LDFLAGS}"
+if [ `uname -m` == "aarch64" ]; then
+    sed -i "s/Linux-i686/Linux-aarch64/" ${SRC_DIR}/Make.compilers
+fi
+make install
 
 mkdir -p $PREFIX
 
@@ -12,6 +15,10 @@ if [ `uname` == Darwin ]; then
     cp Darwin-amd64/bin/* $PREFIX/bin/
     cp Darwin-amd64/include/* $PREFIX/include/
     cp Darwin-amd64/lib/* $PREFIX/lib/
+elif [ `uname -m` == "aarch64" ]; then 
+    cp Linux-aarch64/bin/* $PREFIX/bin/
+    cp Linux-aarch64/include/* $PREFIX/include/
+    cp Linux-aarch64/lib/* $PREFIX/lib/
 else
     cp Linux-amd64/bin/* $PREFIX/bin/
     cp Linux-amd64/include/* $PREFIX/include/
diff --git a/recipes/atac/meta.yaml b/recipes/atac/meta.yaml
index b2610cc218ce7..f0650d89f2dc5 100644
--- a/recipes/atac/meta.yaml
+++ b/recipes/atac/meta.yaml
@@ -9,9 +9,10 @@ source:
   md5: e23ef1d41836b29332b70271b7c9eb74
 
 build:
-  number: 4
-  skip: True  # [py>=30]
-
+  number: 5
+  run_exports:
+    - {{ pin_subpackage("atac", max_pin=None) }}  
+    
 requirements:
   build:
     - make
@@ -37,3 +38,5 @@ about:
 extra:
   identifiers:
     - biotools:atac
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/atlas-fastq-provider/meta.yaml b/recipes/atlas-fastq-provider/meta.yaml
index ea7af33e445c4..ff46a16c2692f 100644
--- a/recipes/atlas-fastq-provider/meta.yaml
+++ b/recipes/atlas-fastq-provider/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.4.6" %}
+{% set version = "0.4.7" %}
 
 package:
   name: atlas-fastq-provider
@@ -6,11 +6,13 @@ package:
 
 source:
   url: https://github.com/ebi-gene-expression-group/atlas-fastq-provider/archive/v{{ version }}.tar.gz
-  sha256: e3c9c7dbbf9447576167ba5d24911b6e794184fd16ec1c80ecc38f8e0bb766a6
+  sha256: 578d1b69a7582fa47073ba4ad7b3bf98df4aceea6fe96a25bb38674a1d362f33
 
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage("atlas-fastq-provider", max_pin="x.x") }}
 
 requirements:
   build:
diff --git a/recipes/atlas-gene-annotation-manipulation/meta.yaml b/recipes/atlas-gene-annotation-manipulation/meta.yaml
index 78ccb7f53235b..b950a1054c28a 100644
--- a/recipes/atlas-gene-annotation-manipulation/meta.yaml
+++ b/recipes/atlas-gene-annotation-manipulation/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.1.0" %}
+{% set version = "1.1.1" %}
 
 package:
   name: atlas-gene-annotation-manipulation
@@ -6,11 +6,13 @@ package:
 
 source:
   url: https://github.com/ebi-gene-expression-group/atlas-gene-annotation-manipulation/archive/v{{ version }}.tar.gz
-  sha256: 402b8a93a0bcab374c51d24048149b80e3fd7d1d78e6c8c93ca22804d06c59df
+  sha256: 25df8b43bbdacd7b05534ccae818cc290c1c5159c4d67cc0dafe52050c681480
 
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage("atlas-gene-annotation-manipulation", max_pin="x") }}
 
 requirements:
   build:
diff --git a/recipes/atropos/meta.yaml b/recipes/atropos/meta.yaml
index 407d86835a930..8fd6958fa8d1b 100644
--- a/recipes/atropos/meta.yaml
+++ b/recipes/atropos/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "atropos" %}
-{% set version = "1.1.31" %}
-{% set hash = "5219575de12334d4b6a365ff682d6271d54fb01568ae52cc27522e33684789c6" %}
+{% set version = "1.1.32" %}
+{% set sha256 = "17e9dc3d76d7a2ca607a12da191a6d7ba1cfbd1a8c924215870417f85858fd83" %}
 
 package:
   name: {{ name }}
@@ -8,15 +8,14 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: {{ hash }}
-  patches:
-    - python310.patch
+  sha256: {{ sha256 }}
 
 build:
-  number: 3
+  number: 1
   # Ensure Cython is rerun by removing *.c output files and PKG-INFO (checked for by setup.py)
-  script: find . "(" -name "*.c" -o -name PKG-INFO ")" -exec rm {} ";" && python -m pip install --no-deps --ignore-installed .
-  skip: True  # [py27]
+  script: find . "(" -name "*.c" -o -name PKG-INFO ")" -exec rm {} ";" && {{ PYTHON }} -m pip install --no-deps --no-build-isolation . -vvv
+  run_exports:
+    - {{ pin_subpackage('atropos', max_pin="x") }}
 
 requirements:
   build:
@@ -36,6 +35,11 @@ test:
     - atropos | grep "Atropos version"
 
 about:
-  home: https://atropos.readthedocs.io/
+  home: https://github.com/jdidion/atropos
   license: CC0 and partly MIT
   summary: 'trim adapters from high-throughput sequencing reads'
+  doc_url: https://atropos.readthedocs.io
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/atropos/python310.patch b/recipes/atropos/python310.patch
deleted file mode 100644
index cb8c9ba8952c8..0000000000000
--- a/recipes/atropos/python310.patch
+++ /dev/null
@@ -1,49 +0,0 @@
-commit 740d337e89320dbd1ba5c011333193cbb5eb952a
-Author: John Marshall <jmarshall@hey.com>
-Date:   Sun Sep 11 17:45:11 2022 +0100
-
-    Import ABCs from collections.abc (Python 3.10 compatibility)
-
-    These classes are no longer available in collections in 3.10.
-    The collections.abc module was introduced in 3.3, and atropos
-    supports only Python >= 3.3, so fortunately there is no need
-    to make this conditional.
-
-diff --git a/atropos/commands/base.py b/atropos/commands/base.py
-index 2a05b6c..0a5cd9e 100644
---- a/atropos/commands/base.py
-+++ b/atropos/commands/base.py
-@@ -1,6 +1,6 @@
- """Common classes/functions used in commands.
- """
--from collections import Sequence
-+from collections.abc import Sequence
- import copy
- import platform
- import sys
-diff --git a/atropos/commands/trim/__init__.py b/atropos/commands/trim/__init__.py
-index c8d6cb8..536c2a5 100644
---- a/atropos/commands/trim/__init__.py
-+++ b/atropos/commands/trim/__init__.py
-@@ -1,6 +1,7 @@
- """Implementation of the 'trim' command.
- """
--from collections import Sequence, defaultdict
-+from collections import defaultdict
-+from collections.abc import Sequence
- import logging
- import os
- import sys
-diff --git a/atropos/util/__init__.py b/atropos/util/__init__.py
-index d5d9bf3..68af7a2 100644
---- a/atropos/util/__init__.py
-+++ b/atropos/util/__init__.py
-@@ -1,6 +1,7 @@
- """Widely useful utility methods.
- """
--from collections import OrderedDict, Iterable, Sequence
-+from collections import OrderedDict
-+from collections.abc import Iterable, Sequence
- from datetime import datetime
- import errno
- import functools
diff --git a/recipes/attotree/meta.yaml b/recipes/attotree/meta.yaml
new file mode 100644
index 0000000000000..9b66f40105c9d
--- /dev/null
+++ b/recipes/attotree/meta.yaml
@@ -0,0 +1,42 @@
+{% set name = "attotree" %}
+{% set version = "0.1.6" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: 9794d2051c007e2e2f38cae53492c2c17b74e6cde2ee5859a8b051dbd65f3a78
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - attotree=attotree.attotree:main
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('attotree', max_pin="x") }}
+
+requirements:
+  host:
+    - pip
+    - python >=3
+  run:
+    - python >=3
+    - mash
+    - quicktree
+
+test:
+  imports:
+    - attotree
+
+about:
+  home: https://github.com/karel-brinda/attotree
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE.txt
+  doc_url: https://github.com/karel-brinda/attotree
+  summary: 'rapid estimation of phylogenetic trees using sketching'
+
+
diff --git a/recipes/augur/meta.yaml b/recipes/augur/meta.yaml
index 9965aa0d31074..0b33c3437e803 100644
--- a/recipes/augur/meta.yaml
+++ b/recipes/augur/meta.yaml
@@ -1,12 +1,12 @@
-{% set version = "22.1.0" %}
+{% set version = "24.4.0" %}
 
 package:
   name: augur
   version: {{ version }}
 
 source:
-  url: https://pypi.io/packages/source/n/nextstrain-augur/nextstrain-augur-{{ version }}.tar.gz
-  sha256: 86ce13fbbced68c55f8bdac449c1ce7dfae0183881df91c5ceb25dd8d177cf05
+  url: https://github.com/nextstrain/augur/releases/download/{{ version }}/nextstrain_augur-{{ version }}.tar.gz
+  sha256: 88ecf208384fff1ba8dee20596c2905a4d27707a39e1e9590d2fef717d29dd5f
 
 build:
   number: 0
@@ -14,27 +14,30 @@ build:
   entry_points:
     - augur = augur.__main__:main
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv"
+  run_exports:
+    - {{ pin_subpackage('augur', max_pin='x') }}
 
 requirements:
   host:
-    - python >=3.7
+    - python >=3.8
     - pip
   run:
-    - python >=3.7
-    - bcbio-gff >=0.7.0,<0.8
-    - biopython >=1.73,!=1.77,!=1.78
+    - python >=3.8
+    - bcbio-gff >=0.7.1,<0.8
+    - biopython >=1.80,<2
     - cvxopt >=1.1.9,<2
+    - importlib_resources >=5.3.0 # [py<311]
     - isodate >=0.6.0,<0.7
     - jsonschema >=3.0.0,<4
-    - networkx >=2.5, <3
+    - networkx >=2.5,<3
     - numpy >=1.0.0,<2
     - packaging >=19.2
     - pandas >=1.0.0,<2
-    - pyfastx >=0.8.4,<0.9
+    - pyfastx >=1.0.0,<3
     - scipy >=1.0.0,<2
-    - treetime >=0.10.0,<0.11
+    - treetime >=0.11.2,<0.12
     - xopen[zstd] >=1.7.0,<2
-    
+
     - fasttree
     - iqtree
     - mafft
diff --git a/recipes/auriclass/build.sh b/recipes/auriclass/build.sh
new file mode 100644
index 0000000000000..a2b39c5996f61
--- /dev/null
+++ b/recipes/auriclass/build.sh
@@ -0,0 +1,12 @@
+#!/bin/sh
+set -eu
+
+$PYTHON -m pip install . --no-deps -vv
+
+curl --output "v${PKG_VERSION}.tar.gz" -L "https://github.com/RIVM-bioinformatics/auriclass/archive/v${PKG_VERSION}.tar.gz"
+
+tar zxvf "v${PKG_VERSION}.tar.gz"
+
+cp -r "auriclass-${PKG_VERSION}/data" "${PREFIX}/data"
+
+rm -rf "v${PKG_VERSION}.tar.gz" "auriclass-${PKG_VERSION}"
diff --git a/recipes/auriclass/meta.yaml b/recipes/auriclass/meta.yaml
new file mode 100644
index 0000000000000..ca42bc5f1cd6e
--- /dev/null
+++ b/recipes/auriclass/meta.yaml
@@ -0,0 +1,52 @@
+{% set name = "AuriClass" %}
+{% set version = "0.5.4" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/RIVM-bioinformatics/auriclass/archive/v{{ version }}.tar.gz
+  sha256: 10ff5421fc968097ff64812be5b248bf14e6c5b9a086ef0156e3de1cc4c2902b
+
+build:
+  noarch: python
+  entry_points:
+    - auriclass = auriclass.main:main
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('auriclass', max_pin='x.x') }}
+
+requirements:
+  host:
+    - python >=3.10
+    - pip
+  run:
+    - python >=3.10
+    - mash >=2
+    - mypy
+    - pandas >=2
+    - pandas-stubs
+    - pyfastx
+    - pytest
+    - pip
+
+
+test:
+  imports:
+    - auriclass
+  commands:
+    - auriclass --help
+
+about:
+  home: https://rivm-bioinformatics.github.io/auriclass/
+  summary: "AuriClass is a tool for quickly predicting the clade of a Candida auris genome."
+  dev_url: https://github.com/RIVM-bioinformatics/auriclass
+  license: GNU Affero General Public v3
+  license_family: AGPL
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - boasvdp
+    - ids-bioinformatics
diff --git a/recipes/auspice/meta.yaml b/recipes/auspice/meta.yaml
index ea71947abdd22..2be485192dd3a 100644
--- a/recipes/auspice/meta.yaml
+++ b/recipes/auspice/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "2.46.0" %}
+{% set version = "2.52.0" %}
 
 package:
   name: auspice
@@ -6,10 +6,12 @@ package:
 
 source:
   url: https://registry.npmjs.org/auspice/-/auspice-{{ version }}.tgz
-  sha256: 15abf48ce7d9400af098bbdc35ab61947ab5390b61676d213f07ec7cd596cb20
+  sha256: c23a411c10066d173ed2c4b687e3f60429b3ef4cf16cc6e13d79766bafba28df
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("auspice", max_pin="x.x") }}
 
 requirements:
   build:
@@ -17,12 +19,12 @@ requirements:
     # vary across platforms.
     - "{{ compiler('c') }}"
     - "{{ compiler('cxx') }}"
-    - nodejs 14.*|16.*|18.*
+    - nodejs 16.*|18.*|20.*
     - python *
     - pkg-config
     - yarn 1.*
   run:
-    - nodejs 14.*|16.*|18.*
+    - nodejs 16.*|18.*|20.*
 
 test:
   commands:
diff --git a/recipes/autometa/meta.yaml b/recipes/autometa/meta.yaml
index 1ef12556f9e34..9eed1bfdd1402 100644
--- a/recipes/autometa/meta.yaml
+++ b/recipes/autometa/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "Autometa" %}
-{% set sha256 = "5f0dae9ffa5b6341d2fe92d6e13c2242ed0e5e8fe10878b691533bda7ed4ecf9" %}
-{% set version = "2.2.0" %}
+{% set sha256 = "2608df1e2727329b3d87a80d85b51f8d79c89d71d90b66c04b9df15e014580c9" %}
+{% set version = "2.2.1" %}
 
 package:
   name: {{ name|lower }}
@@ -15,6 +15,8 @@ build:
   noarch: python
   script:
     - {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vvv
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x.x") }}
 
 requirements:
   host:
@@ -30,9 +32,7 @@ requirements:
     - bowtie2
     - diamond >=2.0
     - gdown
-    - hdbscan
     - hmmer
-    - joblib ==1.1.0
     - numpy >=1.13
     - pandas >=1.1
     - parallel
@@ -42,8 +42,8 @@ requirements:
     - samtools >=1.11
     - seqkit
     - scikit-bio
-    - scipy ==1.8.1
-    - scikit-learn ==0.24
+    - scipy
+    - scikit-learn >=1.3
     - tqdm
     - trimap
     - tsne
diff --git a/recipes/aviary/meta.yaml b/recipes/aviary/meta.yaml
index 2619b699322b3..0b0c688982b3c 100644
--- a/recipes/aviary/meta.yaml
+++ b/recipes/aviary/meta.yaml
@@ -1,28 +1,32 @@
-{% set version = "0.6.0" %}
+{% set version = "0.9.1" %}
 {% set name = "aviary" %}
-{% set sha256 = "311601fb4ac8aef27b69626c29679df88351c674ca717061c215886c3e6c3fda" %}
+{% set sha256 = "51b7096f7e031e0d4cf465249ca6959eda28f66bd8ca24fd5e0989b131a6f9ce" %}
 
 package:
   name: aviary
   version: {{ version }}
 
-build:
-  number: 0
-  noarch: python
-  script: "{{ PYTHON }} -m pip install . -vv"
-
 source:
   url: https://github.com/rhysnewell/{{ name }}/releases/download/v{{ version }}/aviary-genome-{{ version }}.tar.gz
   sha256: {{ sha256 }}
 
+build:
+  number: 0
+  noarch: python
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  entry_points:
+    - aviary = aviary.aviary:main
+  run_exports:
+    - {{ pin_subpackage('aviary', max_pin="x.x") }}
+
 requirements:
   host:
-    - python >=3.8
+    - python >=3.8,<3.12
     - pip
   run:
-    - python >=3.8
-    - snakemake >=6.0.5, <=7.17
-    - ruamel.yaml >=0.15.99 # needs to be explicit
+    - python >=3.8,<3.12
+    - snakemake-minimal >=7.0.0,<=7.32.3
+    - ruamel.yaml >=0.15.99
     - numpy
     - pandas
     - biopython
@@ -30,6 +34,7 @@ requirements:
     - pigz =2.6
     - parallel
     - bbmap
+    - extern
 
 test:
   commands:
@@ -38,11 +43,12 @@ test:
 about:
   home: https://github.com/rhysnewell/aviary/
   doc_url: https://rhysnewell.github.io/aviary/
-  license: GPL3
+  dev_url: https://github.com/rhysnewell/aviary/
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
   summary: End-to-end metagenomics hybrid assembly and binning pipeline.
   description: |
     Aviary is an easy to use hybrid assembler and metagenomic pipeline
 
     For more details see documentation: https://rhysnewell.github.io/aviary/.
-
diff --git a/recipes/b2b-utils/meta.yaml b/recipes/b2b-utils/meta.yaml
index 4c3cffdd7e2ac..3005bb5005855 100755
--- a/recipes/b2b-utils/meta.yaml
+++ b/recipes/b2b-utils/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "b2b-utils" %}
-{% set version = "0.018" %}
-{% set sha256 = "4629fb8b16c1198737684168aa75af8a25937e7c7e758b9ec9e52e9114b137c8" %}
+{% set version = "0.019" %}
+{% set sha256 = "91bc2b5cb1f093f42b51e218c398e5fffdbd7bda36a6281b3e30fa2c1c784e83" %}
 
 package:
   name: "{{ name|lower }}"
@@ -12,6 +12,8 @@ source:
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage('b2b-utils', max_pin="x.x") }}
 
 requirements:
   host:
@@ -66,8 +68,8 @@ test:
 about:
   home: https://github.com/jvolkening/b2b-utils
   dev_url: https://github.com/jvolkening/b2b-utils
-  license: GPLv3
-  license_family: GPL
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
   summary: Genomics tools from BASE2BIO
   description: |
diff --git a/recipes/bacpage/meta.yaml b/recipes/bacpage/meta.yaml
new file mode 100644
index 0000000000000..7183c904056a0
--- /dev/null
+++ b/recipes/bacpage/meta.yaml
@@ -0,0 +1,61 @@
+{% set version = "2023.11.10.1" %}
+
+package:
+  name: bacpage
+  version: {{ version }}
+
+source:
+  url: https://github.com/CholGen/bacpage/archive/refs/tags/{{ version }}.tar.gz
+  sha256: 7a62278131407195a8f7555a92ed2d86ca7e63366bac6d280dac337e5f5218c5 
+
+build:
+  number: 0
+  noarch: python
+  script: "{{ PYTHON }} -m pip install --no-deps --ignore-installed ."
+  run_exports:
+    - {{ pin_subpackage('bacpage') }}
+
+requirements:
+  host:
+    - python <3.12,>=3.9
+    - pip
+  run:
+    - python <3.12,>=3.9
+    - bc
+    - bcftools =1.17
+    - bedtools
+    - biopython
+    - bwa
+    - emboss
+    - fastqc
+    - iqtree
+    - multiqc
+    - pandas
+    - qualimap
+    - samtools =1.17
+    - snakemake-minimal
+    - snp-sites
+    - fastp
+    - lighter
+    - flash
+    - unicycler
+    - prokka
+    - quast
+    - abricate
+
+test:
+  commands:
+    - bacpage -h
+    - bacpage version
+    - bacpage example "$(mktemp -d)"
+
+about:
+  home: https://github.com/CholGen/bacpage
+  license: "GPL-3.0-or-later"
+  license_file: LICENSE
+  summary: An easy-to-use pipeline for the assembly and analysis of bacterial genomes
+  
+
+extra:
+  recipe-maintainers:
+    - watronfire
diff --git a/recipes/bactopia-assembler/meta.yaml b/recipes/bactopia-assembler/meta.yaml
index 4cea042c5b5aa..12a861b1cf8f4 100644
--- a/recipes/bactopia-assembler/meta.yaml
+++ b/recipes/bactopia-assembler/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.0.2" %}
+{% set version = "1.0.4" %}
 
 package:
   name: bactopia-assembler
@@ -7,23 +7,22 @@ package:
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('bactopia-assembler', max_pin='x') }}
 
 source:
   url: https://github.com/bactopia/bactopia-assembler/archive/v{{version}}.tar.gz
-  sha256: 4d2bd49f9cdec7484e7b37028e77d0e772eb041d6420d59dc478936378cb761a
+  sha256: fb332391d7c53db233716bfdc2adc1be25577a268bdb2b3a3fadcea168bcc816
 
 requirements:
   run:
-    - assembly-scan >=1.0.0
     - coreutils
-    - dragonflye >=1.1.1
+    - dragonflye >=1.2.0
     - importlib-metadata <5
-    - nanoq >=0.9.0
-    - python >3.6,<3.11
-    - pigz
     - sed
-    - shovill-se >=1.1.0se
-    - unicycler
+    - shovill-se
+    - skesa >=2.5.1
+    - unicycler >=0.5.0
     - wget
 
 test:
diff --git a/recipes/bactopia-gather/meta.yaml b/recipes/bactopia-gather/meta.yaml
index 8e77f2a38a84d..a56768ac77809 100644
--- a/recipes/bactopia-gather/meta.yaml
+++ b/recipes/bactopia-gather/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.0.3" %}
+{% set version = "1.0.4" %}
 
 package:
   name: bactopia-gather
@@ -10,7 +10,7 @@ build:
 
 source:
   url: https://github.com/bactopia/bactopia-gather/archive/v{{version}}.tar.gz
-  sha256: a8fb55e78a723f2ff239a2f6e254cccbd38283321b483220622f77c13c82fe9f
+  sha256: c0b07ddb4f7b36b53a04c57e4cf18362b1be8e5758a99bffd6efca262237029c
 
 requirements:
   run:
@@ -18,11 +18,11 @@ requirements:
     - bbmap >=39.01
     - biopython 1.77
     - coreutils
-    - fastq-dl >=2.0.2
+    - fastq-dl >=2.0.4
     - fastq-scan >=1.0.1
     - gsl 2.6
     - mash >=2.3
-    - ncbi-genome-download >=0.3.1
+    - ncbi-genome-download >=0.3.3
     - rename
     - pigz
     - python >=3.8,<3.11
diff --git a/recipes/bactopia-py/meta.yaml b/recipes/bactopia-py/meta.yaml
index 73bb70ae6b0ac..c41a907cbdf07 100644
--- a/recipes/bactopia-py/meta.yaml
+++ b/recipes/bactopia-py/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "bactopia-py" %}
-{% set version = "1.0.4" %}
+{% set version = "1.1.1" %}
 
 package:
   name: {{ name|lower }}
@@ -7,12 +7,14 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/bactopia/bactopia-{{ version }}.tar.gz
-  sha256: c139be0d812f95cf466347ca03f1b4875e2f64038b5c5aec3f33dc438c4a195f
+  sha256: a7e450658ca609d8fd93bc1beb343aa3fea76ac0cee06842f407cdc4d85299fa
 
 build:
   noarch: python
   script: {{ PYTHON }} -m pip install . -vv
   number: 0
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin='x.x') }}
 
 requirements:
   host:
diff --git a/recipes/bactopia-qc/meta.yaml b/recipes/bactopia-qc/meta.yaml
index 49db2c11aa1b9..c353c88a8c8f5 100644
--- a/recipes/bactopia-qc/meta.yaml
+++ b/recipes/bactopia-qc/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.0.1" %}
+{% set version = "1.0.2" %}
 
 package:
   name: bactopia-qc
@@ -10,24 +10,24 @@ build:
 
 source:
   url: https://github.com/bactopia/bactopia-qc/archive/v{{version}}.tar.gz
-  sha256: f9c3837852f3b6f3bb1f58d8b0984809b07657c4137c6483e7113d4c959a9246
+  sha256: e30768ecd3f46d84d36d2db8c931db83b350e988822eeb3594db4031e015c7e1
 
 requirements:
   run:
     - bbmap >=39.01
     - biopython 1.77
     - coreutils
-    - fastp >=0.23.2
-    - fastqc >=0.11.9
+    - fastp >=0.23.4
+    - fastqc >=0.12.1
     - fastq-scan >=1.0.1
     - gsl 2.6
     - lighter >=1.1.2
-    - nanoplot >=1.40.2
-    - nanoq >=0.9.0
+    - nanoplot >=1.41.6
+    - nanoq >=0.10.0
     - pigz
     - porechop >=0.2.4
     - python >=3.7,<3.11
-    - rasusa >=0.7.0
+    - rasusa >=0.7.1
     - rename
     - sed
 
diff --git a/recipes/bactopia-sketcher/meta.yaml b/recipes/bactopia-sketcher/meta.yaml
index 4bd2fa6c229f6..b0263922950fe 100644
--- a/recipes/bactopia-sketcher/meta.yaml
+++ b/recipes/bactopia-sketcher/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.0.0" %}
+{% set version = "1.0.2" %}
 
 package:
   name: bactopia-sketcher
@@ -7,10 +7,12 @@ package:
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('bactopia-sketcher', max_pin='x.x') }}
 
 source:
   url: https://github.com/bactopia/bactopia-sketcher/archive/v{{version}}.tar.gz
-  sha256: dee26f7084eec3e7774df38864119e31e1ee8130cc981dd5ad66c23e141f00e7
+  sha256: 1f0957cdd52f2731a181f408b00daa3ec367715a0e675ef57d42c8a51c0345f6
 
 requirements:
   run:
@@ -18,9 +20,9 @@ requirements:
     - gsl 2.6
     - mash >=2.3
     - pigz
-    - python>=3.6,<3.11
+    - python >=3.6,<3.11
     - sed
-    - sourmash >=4.5.0
+    - sourmash >=4.8.4
 
 test:
   commands:
diff --git a/recipes/bactopia-teton/meta.yaml b/recipes/bactopia-teton/meta.yaml
index 15975bf892a4f..52ec542ba5e0d 100644
--- a/recipes/bactopia-teton/meta.yaml
+++ b/recipes/bactopia-teton/meta.yaml
@@ -1,45 +1,49 @@
-{% set version = "1.0.0" %}
-
-package:
-  name: bactopia-teton
-  version: {{ version }}
-
-build:
-  number: 0
-  noarch: generic
-
-source:
-  url: https://github.com/bactopia/bactopia-teton/archive/v{{version}}.tar.gz
-  sha256: 878071ab7e3aca0a2e5f75b75b90e0291e7bd7bacebd01445adefbb738ab2f9d
-
-requirements:
-  run:
-    - bracken >=2.7
-    - coreutils
-    - fastq-scan >=1.0.1
-    - gsl 2.6
-    - kraken2 >=2.1.2
-    - krakentools >=1.2
-    - krona >=2.8.1
-    - pandas
-    - pigz
-    - python >=3.6,<3.11
-    - sed
-
-test:
-  commands:
-    - "bactopia-teton"
-
-about:
-  home: https://bactopia.github.io/
-  license: MIT
-  license_file: LICENSE
-  summary: Methods used by Bactopia for taxonomic classification
-  dev_url: https://github.com/bactopia/bactopia-teton/
-
-extra:
-  recipe-maintainers:
-    - rpetit3
-  identifiers:
-    - biotools:bactopia
-    - doi:10.1128/mSystems.00190-20
+{% set version = "1.0.2" %}
+
+package:
+  name: bactopia-teton
+  version: {{ version }}
+
+build:
+  number: 0
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage('bactopia-teton', max_pin='x.x') }}
+
+source:
+  url: https://github.com/bactopia/bactopia-teton/archive/v{{version}}.tar.gz
+  sha256: 3e1e78616b1b07747c6b54fe51e2bb300fbbd5171927388f4384dac3afb9b1dc
+
+requirements:
+  run:
+    - bracken >=2.8
+    - coreutils
+    - fastq-scan >=1.0.1
+    - gsl 2.6
+    - hostile >=0.1.0
+    - kraken2 >=2.1.3
+    - krakentools >=1.2
+    - krona >=2.8.1
+    - pandas
+    - pigz
+    - python >=3.6,<3.11
+    - sed
+    - sra-human-scrubber >=2.2
+
+test:
+  commands:
+    - "bactopia-teton"
+
+about:
+  home: https://bactopia.github.io/
+  license: MIT
+  license_file: LICENSE
+  summary: Methods used by Bactopia for taxonomic classification
+  dev_url: https://github.com/bactopia/bactopia-teton/
+
+extra:
+  recipe-maintainers:
+    - rpetit3
+  identifiers:
+    - biotools:bactopia
+    - doi:10.1128/mSystems.00190-20
diff --git a/recipes/bactopia-variants/meta.yaml b/recipes/bactopia-variants/meta.yaml
index 2f5ca0c2d21b5..cb6e67163305d 100644
--- a/recipes/bactopia-variants/meta.yaml
+++ b/recipes/bactopia-variants/meta.yaml
@@ -1,44 +1,48 @@
-{% set version = "1.0.0" %}
-
-package:
-  name: bactopia-variants
-  version: {{ version }}
-
-build:
-  number: 0
-  noarch: generic
-
-source:
-  url: https://github.com/bactopia/bactopia-variants/archive/v{{version}}.tar.gz
-  sha256: 809b1fcab1d3d342dfcb1014483c1d7a956002b3d84c2e5e7c855f963425dab9
-
-requirements:
-  run:
-    - coreutils
-    - gsl 2.6
-    - openjdk 11.0.15
-    - pigz
-    - python >=3.6,<3.11
-    - rename
-    - snippy >=4.6.0
-    - snpeff >=4.3,<5
-    - sed
-    - vcf-annotator >=0.7
-
-test:
-  commands:
-    - "bactopia-variants"
-
-about:
-  home: https://bactopia.github.io/
-  license: MIT
-  license_file: LICENSE
-  summary: Methods used by Bactopia for SNP and InDel analysis
-  dev_url: https://github.com/bactopia/bactopia-variants/
-
-extra:
-  recipe-maintainers:
-    - rpetit3
-  identifiers:
-    - biotools:bactopia
-    - doi:10.1128/mSystems.00190-20
+{% set version = "1.0.2" %}
+
+package:
+  name: bactopia-variants
+  version: {{ version }}
+
+build:
+  number: 0
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage("bactopia-variants", max_pin="x") }}
+
+source:
+  url: https://github.com/bactopia/bactopia-variants/archive/v{{version}}.tar.gz
+  sha256: 0adcc2cbdbcdd851f604243e88a9bb687baf00c533152899399da1f4ef759ae9
+
+requirements:
+  run:
+    - coreutils
+    - gsl 2.6
+    - openjdk 11.0.15
+    - pigz
+    - python >=3.6,<3.11
+    - rename
+    - snippy >=4.6.0
+    - snpeff >=4.3,<5
+    - sed
+    - vcf-annotator >=0.7
+    - vcflib >=1.0.0_rc3,<=1.0.2 # Snippy crashes with v1.0.3 and later
+    - tabixpp 1.1.0 # vcflib requires libtabixpp.so.0, no longer available as of 1.1.2
+
+test:
+  commands:
+    - "bactopia-variants"
+
+about:
+  home: https://bactopia.github.io/
+  license: MIT
+  license_file: LICENSE
+  summary: Methods used by Bactopia for SNP and InDel analysis
+  dev_url: https://github.com/bactopia/bactopia-variants/
+
+extra:
+  recipe-maintainers:
+    - rpetit3
+  identifiers:
+    - biotools:bactopia
+    - doi:10.1128/mSystems.00190-20
diff --git a/recipes/bactopia/build.sh b/recipes/bactopia/build.sh
index 3d5902df5f785..bd6ab04342356 100755
--- a/recipes/bactopia/build.sh
+++ b/recipes/bactopia/build.sh
@@ -1,13 +1,13 @@
 #!/bin/bash
-BACTOPIA_VERSION="${PKG_VERSION%.*}.x"
-BACTOPIA="${PREFIX}/share/${PKG_NAME}-${BACTOPIA_VERSION}"
+BACTOPIA="${PREFIX}/share/${PKG_NAME}-${PKG_VERSION}"
 mkdir -p ${PREFIX}/bin ${BACTOPIA}
 
-chmod 775 bin/*.py
+chmod 775 bin/*.py bin/helpers/*
 cp bin/*.py ${PREFIX}/bin
+cp bin/helpers/* ${PREFIX}/bin
 
 chmod 775 bin/bactopia/*
-mv bin/bactopia/* ${PREFIX}/bin
+cp bin/bactopia/* ${PREFIX}/bin
 
 # Move bactopia nextflow
-mv bin/ conda/ conf/ data/ lib/ modules/ subworkflows/ tests/ workflows/ main.nf nextflow.config ${BACTOPIA}
+mv bin/ conf/ data/ lib/ modules/ subworkflows/ tests/ workflows/ main.nf citations.yml nextflow.config ${BACTOPIA}
diff --git a/recipes/bactopia/meta.yaml b/recipes/bactopia/meta.yaml
index b689134c076e6..55a6a219c4b5d 100644
--- a/recipes/bactopia/meta.yaml
+++ b/recipes/bactopia/meta.yaml
@@ -1,42 +1,34 @@
-{% set version = "2.2.0" %}
+{% set name = "bactopia" %}
+{% set version = "3.0.1" %}
 
 package:
-  name: bactopia
+  name: {{ name }}
   version: {{ version }}
 
 build:
-  number: 0
+  number: 1
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
 
 source:
   url: https://github.com/bactopia/bactopia/archive/v{{version}}.tar.gz
-  sha256: 489e531d6bbf13aa183435c03859f5dc4c98e50421e9cf4dca19d598777db326
+  sha256: f3f152294555c05ec37c20041385034b02a79a709d7801b07d2115f50115fa4a
 
 requirements:
   run:
-    - biopython
-    - blast >=2.11.0
-    - cd-hit
-    - conda
+    - bactopia-py 1.0.9
+    - conda >=22.11.0
     - coreutils
-    - executor
-    - gsl <=2.6
-    - mamba
-    - mash
-    - ncbi-amrfinderplus 3.10.45
-    - ncbi-genome-download
-    - nextflow >=22.10.0
-    - python >3.6,<3.10
-    - requests 
+    - mamba >=1.1.0
+    - nextflow >=21.10.0
+    - python >=3.9
     - sed
-    - tbb 2020.2
-    - unzip
     - wget
 
 test:
   commands:
     - "bactopia --version"
-    - "bactopia datasets --help"
     - "bactopia prepare"
     - "bactopia search"
 
diff --git a/recipes/badread/meta.yaml b/recipes/badread/meta.yaml
index 00bef0af70ac4..f787041f5d582 100644
--- a/recipes/badread/meta.yaml
+++ b/recipes/badread/meta.yaml
@@ -1,5 +1,5 @@
-{% set version='0.4.0' %}
-{% set sha256='1920f1efc1eae7b17f1fd9c6878795b5ba8d7fd910c933999aad349672a994b0' %}
+{% set version='0.4.1' %}
+{% set sha256='236dee5ac99b8d0c1997c482df5b805908b0c34f75277ef706e897af71db1f9a' %}
 
 package:
   name: badread
@@ -10,9 +10,11 @@ source:
   sha256: {{ sha256 }}
   
 build:
-  number: 1
+  number: 0
   noarch: python
   script: {{ PYTHON }} -m pip install . --no-deps -vv
+  run_exports:
+    - {{ pin_subpackage('badread', max_pin='x.x') }}
 
 requirements:
   host:
diff --git a/recipes/bakta/meta.yaml b/recipes/bakta/meta.yaml
index 40ec8882ae316..2f9fe0bceefe4 100644
--- a/recipes/bakta/meta.yaml
+++ b/recipes/bakta/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.8.1" %}
+{% set version = "1.9.3" %}
 
 package:
   name: bakta
@@ -6,7 +6,7 @@ package:
 
 source:
   url: https://github.com/oschwengers/bakta/archive/v{{ version }}.tar.gz
-  sha256: '4a2cf7c08ed66a5ae119aa477d20dcf0d5d094aab83fdea4e9bb4a9283dd1e0b'
+  sha256: '774a60b4fa2032ac4804a37eafdb4c2c67f2573d7f93e785b58963a47d535e70'
 
 build:
   noarch: python
@@ -17,27 +17,29 @@ build:
     - bakta_proteins = bakta.proteins:main
     - bakta_db = bakta.db:main
     - bakta_plot = bakta.plot:main
+  run_exports:
+    - {{ pin_subpackage('bakta', max_pin='x.x') }}
 
 requirements:
   host:
-    - python >=3.8
+    - python >=3.8, <3.11
     - pip
   run:
-    - python >=3.8
-    - biopython >=1.80
-    - xopen >=1.1.0
+    - python >=3.8, <3.11
+    - biopython >=1.78
+    - xopen >=1.5.0
     - requests >=2.25.1
     - alive-progress ==3.0.1
     - pyyaml >=6.0
-    - pyrodigal >=2.1.0
+    - pyrodigal >=3.1.0
     - trnascan-se >=2.0.11
     - aragorn >=1.2.41
     - infernal >=1.1.4
     - piler-cr
-    - hmmer >=3.3.2
-    - diamond >=2.0.14
-    - blast >=2.12.0
-    - ncbi-amrfinderplus >=3.11.2
+    - pyhmmer >=0.10.4
+    - diamond ==2.1.8
+    - blast >=2.14.0
+    - ncbi-amrfinderplus >=3.11.26
     - circos >=0.69.8
 
 test:
diff --git a/recipes/bali-phy/build.sh b/recipes/bali-phy/build.sh
index 8ac25a18501eb..3ef5baf24dd45 100644
--- a/recipes/bali-phy/build.sh
+++ b/recipes/bali-phy/build.sh
@@ -2,9 +2,9 @@
 
 set -vex
 
-# C++17 is not properly supported on early OSX versions
+# C++20 is not properly supported on early OSX versions
 case "${target_platform}" in osx-*)
-    export MACOSX_DEPLOYMENT_TARGET=10.13
+    export MACOSX_DEPLOYMENT_TARGET=11.0
     xcodebuild -sdk -version
     ${CXX} -v
 esac
@@ -12,8 +12,8 @@ esac
 export BOOST_ROOT="${PREFIX}"
 export PKG_CONFIG_LIBDIR="${PREFIX}"/lib/pkgconfig
 
-pkg-config --list-all
-pkg-config --cflags cairo
+#pkg-config --list-all
+#pkg-config --cflags cairo
 
 echo "CC=$CC"
 echo "CFLAGS=$CFLAGS"
@@ -22,7 +22,7 @@ echo "CPPFLAGS=$CPPFLAGS"
 echo "CXXFLAGS=$CXXFLAGS"
 
 echo "Removing -mmacosx-version-min=10.9 from CPPFLAGS..."
-CPPFLAGS="$(echo $CPPFLAGS | sed 's/-mmacosx-version-min=10.9/-mmacosx-version-min=10.13/g')"
+CPPFLAGS="$(echo $CPPFLAGS | sed 's/-mmacosx-version-min=10.9/-mmacosx-version-min=11.0/g')"
 echo "CPPFLAGS=$CPPFLAGS"
 
 echo "Removing -O2 and -std=c++14 from CXXFLAGS..."
@@ -30,7 +30,7 @@ CXXFLAGS="$(echo $CXXFLAGS | sed 's/-O2//g' | sed 's/-std=c++14//g')"
 echo "CXXFLAGS=$CXXFLAGS"
 
 # configure
-meson \
+meson setup \
     --prefix="$PREFIX" \
     --buildtype=release \
     -Db_ndebug=true \
@@ -38,13 +38,14 @@ meson \
 
 cd builddir
 
-cat meson-logs/meson-log.txt
+# cat meson-logs/meson-log.txt
 
 # build
 meson compile
 
-# test
-meson test
-
 # install
 meson install
+
+# check
+${PREFIX}/bin/bali-phy --help
+${PREFIX}/bin/bali-phy ${PREFIX}/share/doc/bali-phy/examples/5S-rRNA/5d.fasta --iter=20
diff --git a/recipes/bali-phy/meta.yaml b/recipes/bali-phy/meta.yaml
index 6c9cec071d183..b4b41eb114929 100644
--- a/recipes/bali-phy/meta.yaml
+++ b/recipes/bali-phy/meta.yaml
@@ -1,29 +1,31 @@
 package:
   name: bali-phy
-  version: '3.6.0'
+  version: '4.0beta13'
 
 source:
-  url: https://github.com/bredelings/bali-phy/archive/3.6.0.tar.gz
-  sha256: 88f1922f80d0376ec2a0929d72d69258eac3dfba0eef13aab3f9c460db1ac0b6
+  url: https://github.com/bredelings/bali-phy/archive/4.0-beta13.tar.gz
+  sha256: 52131abf92176b4085a6b6fa645e40d2103b61a37d16d4b22eab17f635fb96fe
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('bali-phy', max_pin='x') }}
 
 requirements:
   build:
     - {{ compiler('cxx') }}
-    - meson >=0.57.1
+    - meson >=1.1.0
     - ninja
     - pkg-config
   host:
     - eigen >=3.3.7
-    - boost-cpp
+    - boost-cpp >=1.83.0
     - glib
     - cairo
     - pandoc
   run:
     - eigen >=3.3.7
-    - boost-cpp
+    - boost-cpp >=1.83.0
     - glib
     - cairo
     - pandoc
diff --git a/recipes/balrog/meta.yaml b/recipes/balrog/meta.yaml
index 0811762f8e566..b9157d536a298 100644
--- a/recipes/balrog/meta.yaml
+++ b/recipes/balrog/meta.yaml
@@ -6,7 +6,9 @@ package:
   version: {{ version }}
 
 build:
-  number: 4
+  number: 5
+  run_exports:
+    - {{ pin_subpackage("balrog", max_pin="x.x") }}  
 
 source:
   url: https://github.com/salzberg-lab/BalrogCPP/archive/v{{ version }}.tar.gz
@@ -35,3 +37,7 @@ about:
   license: MIT
   license_file: LICENSE
   summary: "Balrog: A universal protein model for prokaryotic gene prediction"
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/bamcmp/meta.yaml b/recipes/bamcmp/meta.yaml
index e9798a1a41ca0..6972f19620ab3 100644
--- a/recipes/bamcmp/meta.yaml
+++ b/recipes/bamcmp/meta.yaml
@@ -7,7 +7,9 @@ source:
   md5: 05e583af007f86b275bcf95eceea7ba7
 
 build:
-  number: 4
+  number: 5
+  run_exports:
+    - {{ pin_subpackage("bamcmp", max_pin="x") }}  
   script_env:
     - HTSLIBDIR=$PREFIX
  
@@ -28,3 +30,7 @@ about:
   home: https://github.com/CRUKMI-ComputationalBiology/bamcmp
   license: GPL-3
   summary: Tools for deconvolving host and graft reads using full-length alignments and their scores.
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/isoncorrect/LICENSE b/recipes/bamdash/LICENSE
similarity index 99%
rename from recipes/isoncorrect/LICENSE
rename to recipes/bamdash/LICENSE
index c154efd7d3d4a..f288702d2fa16 100644
--- a/recipes/isoncorrect/LICENSE
+++ b/recipes/bamdash/LICENSE
@@ -672,5 +672,3 @@ may consider it more useful to permit linking proprietary applications with
 the library.  If this is what you want to do, use the GNU Lesser General
 Public License instead of this License.  But first, please read
 <https://www.gnu.org/licenses/why-not-lgpl.html>.
-
-
diff --git a/recipes/bamdash/meta.yaml b/recipes/bamdash/meta.yaml
new file mode 100644
index 0000000000000..2a77d75331151
--- /dev/null
+++ b/recipes/bamdash/meta.yaml
@@ -0,0 +1,50 @@
+{% set name = "bamdash" %}
+{% set version = "0.2.4" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/bamdash-{{ version }}.tar.gz
+  sha256: 9e9d81cb5cefbb2f356d1a1e05ffc84bcaee0cfbfd16b5e92d905817337ea4e8
+
+build:
+  entry_points:
+    - bamdash = bamdash.command:main
+  noarch: python
+  script: {{ PYTHON }} -m pip install . --no-deps -vv
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('bamdash', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.9
+    - pip
+  run:
+    - python >=3.9
+    - biopython >=1.79
+    - pandas >=1.4.4
+    - plotly >=5.17.0
+    - python-kaleido >=0.2.1
+    - pysam >=0.21.0
+
+test:
+  imports:
+    - bamdash
+  commands:
+    - pip check
+    - bamdash --help
+  requires:
+    - pip
+
+about:
+  home: https://github.com/jonas-fuchs/BAMdash
+  summary: Aggregate pathogen NGS results into an interactive plot
+  license: GPL-3.0-or-later
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - jonas-fuchs
diff --git a/recipes/bamtools/meta.yaml b/recipes/bamtools/meta.yaml
index 4b1e918f5bfae..803497b6c9a4b 100644
--- a/recipes/bamtools/meta.yaml
+++ b/recipes/bamtools/meta.yaml
@@ -1,7 +1,8 @@
+{% set name = "bamtools" %}
 {% set version = "2.5.2" %}
 
 package:
-  name: bamtools
+  name: {{ name }}
   version: {{ version }}
 
 source:
@@ -11,7 +12,9 @@ source:
 #    - 0001-Const-qualify-all-functors-operator-member-functions.patch
 
 build:
-  number: 2
+  number: 3
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
 
 requirements:
   build:
@@ -32,5 +35,7 @@ about:
   summary: C++ API & command-line toolkit for working with BAM data
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:bamtools
diff --git a/recipes/bandage_ng/build.sh b/recipes/bandage_ng/build.sh
index bfdab287aefb2..511eeffad3281 100644
--- a/recipes/bandage_ng/build.sh
+++ b/recipes/bandage_ng/build.sh
@@ -1,13 +1,24 @@
 #!/bin/bash
 set -ex
 
-mkdir build && cd build
+mkdir -p build && cd build
+
+if [[ $(uname) == "Linux" ]]; then
+  CMAKE_ARGS="${CMAKE_ARGS} -DFEATURE_egl=ON -DFEATURE_eglfs=ON"
+fi
+
 cmake \
     -DCMAKE_PREFIX_PATH=${PREFIX} \
-    -DCMAKE_CXX_FLAGS="${CXXFLAGS} -D__STDC_FORMAT_MACROS" \
+    -DCMAKE_CXX_FLAGS="${CXXFLAGS} \
+    -D__STDC_FORMAT_MACROS" \
+    -DEGL_INCLUDE_DIR:PATH=${BUILD_PREFIX}/${HOST}/sysroot/usr/include \
+    -DEGL_LIBRARY:FILEPATH=${BUILD_PREFIX}/${HOST}/sysroot/usr/lib/libEGL.so.1 \
+    -DOPENGL_egl_LIBRARY:FILEPATH=${BUILD_PREFIX}/${HOST}/sysroot/usr/lib/libEGL.so.1 \
+    -DEGL_opengl_LIBRARY:FILEPATH=${BUILD_PREFIX}/${HOST}/sysroot/usr/lib64/libGL.so \
+    -DOPENGL_opengl_LIBRARY:FILEPATH=${BUILD_PREFIX}/${HOST}/sysroot/usr/lib64/libGL.so \
     ..
 make
 
 # Install
-mkdir $PREFIX/bin
+mkdir -p $PREFIX/bin
 cp BandageNG $PREFIX/bin/Bandage
diff --git a/recipes/bandage_ng/meta.yaml b/recipes/bandage_ng/meta.yaml
index d0fe090443a5f..8068c2cda5f82 100644
--- a/recipes/bandage_ng/meta.yaml
+++ b/recipes/bandage_ng/meta.yaml
@@ -1,43 +1,51 @@
 {% set name = "bandage_ng" %}
 {% set version = "2022.09" %}
-{% set versionx = "2022_09" %}
 
 package:
   name: "{{ name|lower }}"
   version: "{{ version }}"
 
 source:
-  - url: https://github.com/asl/BandageNG/archive/refs/tags/v2022.09.tar.gz
+  - url: https://github.com/asl/BandageNG/archive/refs/tags/v{{ version }}.tar.gz
     sha256: 892c36350ee0eb8a58ec7187cf08b6b5b288915bd74f6d69e68c7aa2fdd704f0
 
 build:
-  number: 2
+  number: 3
   skip: True # [osx]
+  run_exports:
+    - {{ pin_subpackage("bandage_ng", max_pin=None) }}
 
 requirements:
   build:
     - make
     - cmake
     - {{ compiler('cxx') }}
-    - {{ cdt('mesa-libgl-devel') }}
-    - {{ cdt('mesa-dri-drivers') }}
-    - {{ cdt('libselinux') }}
-    - {{ cdt('libxdamage') }}
-    - {{ cdt('libxxf86vm') }}
-    - {{ cdt('libxfixes') }}
-    - xorg-libxext
+    - {{ cdt('mesa-libgl-devel') }}      # [linux]
+    - {{ cdt('mesa-libegl-devel') }}     # [linux]
+    - {{ cdt('mesa-dri-drivers') }}      # [linux]
+    - {{ cdt('libdrm-devel') }}          # [linux]
+    - {{ cdt('libglvnd-glx') }}          # [linux and cdt_name != 'cos6']
+  host:
+    - xorg-libx11                        # [linux]
+    - xorg-libxext                       # [linux]
+    - xorg-libxdamage                    # [linux]
+    - xorg-libsm                         # [linux]
+    - xorg-libice                        # [linux]
+    - xorg-libxcomposite                 # [linux]
+    - xorg-libxxf86vm                    # [linux]
+    - xorg-xf86vidmodeproto              # [linux]
     - qt6-main
   run:
     - qt6-main
     - fonts-conda-ecosystem
-    - xorg-libxrender
 test:
   commands:
     - which Bandage
+    - QT_QPA_PLATFORM='offscreen' Bandage --version
 
 about:
   home: https://github.com/asl/BandageNG
-  license: GNU General Public License, version 3
+  license: GPL-3.0
   license_family: GPL3
   license_file: COPYING
   summary: Bandage - a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
diff --git a/recipes/baredsc/meta.yaml b/recipes/baredsc/meta.yaml
index cbbbbd8963439..48c80ba130384 100644
--- a/recipes/baredsc/meta.yaml
+++ b/recipes/baredsc/meta.yaml
@@ -1,18 +1,20 @@
 {% set name = "baredSC" %}
-{% set version = "1.1.1" %}
- 
+{% set version = "1.1.3" %}
+
 package:
   name: {{ name | lower }}
   version: {{ version }}
 
 source:
   url: https://github.com/lldelisle/baredSC/archive/v{{ version }}.tar.gz
-  sha256: 0c1f488ccd5f276813477dcadc0a844d00702901c34a2e758ada06db59f58c4f
+  sha256: 96b4eee8d959ab4d30350ae7ac91d89501bb7175ab4c3bd3e3e9ff6b0c1dcfcf
 
 build:
   number: 0
-  script: "{{ PYTHON }} -m pip install . --no-deps -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('baredsc', max_pin="x") }}
 
 requirements:
   host:
@@ -39,10 +41,13 @@ test:
 
 about:
   home: https://github.com/lldelisle/baredSC/
-  license: GPL3
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
   summary: baredSC (Bayesian Approach to Retreive Expression Distribution of Single Cell) is a tool that uses a Monte-Carlo Markov Chain to estimate a confidence interval on the probability density function (PDF) of expression of one or two genes from single-cell RNA-seq data.
 
 extra:
   recipe-maintainers:
     - lldelisle
+
+ 
\ No newline at end of file
diff --git a/recipes/bayescode/meta.yaml b/recipes/bayescode/meta.yaml
index 204e24a402d5d..92815ce859119 100644
--- a/recipes/bayescode/meta.yaml
+++ b/recipes/bayescode/meta.yaml
@@ -1,12 +1,14 @@
-{% set version = "1.2.2" %}
-{% set sha256 = "cd60df1166d05cd0107ba8da61de42d038dfb2c5514af2f57ee12f9788c947af" %}
+{% set version = "1.3.2" %}
+{% set sha256 = "53febe5e4495bfb029da04b209c5722ee0de0c13db53ec98de277d571469d26f" %}
 
 package:
   name: bayescode
-  version: {{ version }} 
+  version: {{ version }}
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage('bayescode', max_pin="x") }}
 
 source:
   url: https://github.com/ThibaultLatrille/bayescode/archive/refs/tags/v{{ version }}.tar.gz
@@ -18,13 +20,13 @@ requirements:
     - cmake
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
-  host:
   run:
     - python >=3.6
     - numpy
     - pandas
     - ete3
     - matplotlib-base
+
 test:
   commands:
     - fasta_to_ali.py --help
@@ -45,5 +47,6 @@ test:
 about:
   home: https://github.com/ThibaultLatrille/bayescode
   license: MIT
+  license_family: MIT
   license_file: License.MD
   summary: Mutation-Selection phylogenetic codon models to detect site-specific adaptive evolution or to infer long-term effective population size
diff --git a/recipes/bbknn/meta.yaml b/recipes/bbknn/meta.yaml
index 64871ea31723a..55e9dcda0c2c7 100644
--- a/recipes/bbknn/meta.yaml
+++ b/recipes/bbknn/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "bbknn" %} 
-{% set version = "1.5.1" %}
+{% set version = "1.6.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 16da9c778ddfe363f8a3fa0d72707694d2217f94d3a87482336e8a2c6beb2160 
+  sha256: 1c01a9d6df2fc52a527de8a403617897a4b672724863299a7026f2132f1b041b 
 
 build:
-  number: 3
-  skip: true  # [py2k or py == 310]
+  number: 0
+  skip: true  # [py2k]
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  run_exports:
+    - {{ pin_subpackage('bbknn', max_pin="x") }}
 
 requirements:
   build:
@@ -24,19 +26,19 @@ requirements:
     - numpy >=1.13
     - pip
     - python
-    - scipy
-    - scikit-learn
+    - flit-core >=3.2,<4
+    - scipy >=1.6.0
+    - scikit-learn >=1.0.2
     - umap-learn
-    - packaging
+    - pandas
   run:
     - python
     - python-annoy
     - pynndescent
     - numpy >=1.13
-    - scipy
-    - scikit-learn
+    - scipy >=1.6.0
+    - scikit-learn >=1.0.2
     - umap-learn
-    - packaging
     - pandas
 
 test:
diff --git a/recipes/bbmap/build.sh b/recipes/bbmap/build.sh
index e1f2e8a16fe49..3cad42d6b4a27 100755
--- a/recipes/bbmap/build.sh
+++ b/recipes/bbmap/build.sh
@@ -4,12 +4,16 @@ set -x -e -o pipefail
 
 BINARY_HOME=$PREFIX/bin
 BBMAP_HOME=$PREFIX/opt/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
+DATA_HOME=$PREFIX/share/$PKG_NAME
 
 mkdir -p $BINARY_HOME
 mkdir -p $BBMAP_HOME
+mkdir -p $DATA_HOME
 
 chmod a+x *.sh
 
 cp -R * $BBMAP_HOME/
 
 find *.sh -type f -exec ln -s $BBMAP_HOME/{} $BINARY_HOME/{} \;
+
+cp -R $BBMAP_HOME/resources $DATA_HOME
diff --git a/recipes/bbmap/meta.yaml b/recipes/bbmap/meta.yaml
index 68499749c3bf0..7cc8eb01e781e 100644
--- a/recipes/bbmap/meta.yaml
+++ b/recipes/bbmap/meta.yaml
@@ -1,9 +1,6 @@
 {% set name = "BBMap" %}
-{% set version = "39.01" %}
-{% set sha256 = "98608da50130c47f3abd095b889cc87f60beeb8b96169b664bc9d849abe093e6" %}
-
-build:
-  number: 1
+{% set version = "39.06" %}
+{% set sha256 = "61d45bd59a543b90a143c5c7dbfec0ff6163dce54194b8c4b648fb6aac67d42e" %}
 
 package:
   name: {{ name|lower }}
@@ -13,6 +10,11 @@ source:
   url: http://downloads.sourceforge.net/project/{{ name|lower }}/{{ name }}_{{ version }}.tar.gz
   sha256: {{ sha256 }}
 
+build:
+  number: 1
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x") }}
+
 requirements:
   build:
     - {{ compiler('c') }}
@@ -47,6 +49,8 @@ about:
   summary: "BBMap is a short read aligner, as well as various other bioinformatic tools."
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   notes: |
     BBMap is a series of Java programs, but they come with a number of custom
     wrapper shell scripts. Each of these is symlinked to the conda bin directory
diff --git a/recipes/bcalm/meta.yaml b/recipes/bcalm/meta.yaml
index 7dcb72552226d..225521b463c93 100644
--- a/recipes/bcalm/meta.yaml
+++ b/recipes/bcalm/meta.yaml
@@ -11,7 +11,9 @@ source:
   sha256: '{{sha256}}'
   
 build:
-  number: 5
+  number: 6
+  run_exports:
+    - {{ pin_subpackage("bcalm", max_pin="x.x.x") }}  
 
 requirements:
   build:
@@ -33,3 +35,7 @@ about:
   home: https://github.com/GATB/bcalm
   license: MIT License
   summary: BCALM 2 is a bioinformatics tool for constructing the compacted de Bruijn graph from sequencing data.
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/bcbio-gff/meta.yaml b/recipes/bcbio-gff/meta.yaml
index 90f1c2105a763..cceb7684f852b 100644
--- a/recipes/bcbio-gff/meta.yaml
+++ b/recipes/bcbio-gff/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "bcbio-gff" %}
-{% set version = "0.7.0" %}
+{% set version = "0.7.1" %}
 
 package:
     name: {{ name|lower }}
@@ -7,11 +7,13 @@ package:
 
 source:
   url: https://pypi.io/packages/source/b/{{ name|lower }}/{{ name }}-{{ version }}.tar.gz
-  sha256: f7b3922ee274106f8716703f41f05a1795aa9d73e903f4e481995ed8f5f65d2d
+  sha256: d1dc3294147b95baced6033f6386a0fed45c43767ef02d1223df5ef497e9cca6
 
 build:
-  number: 0
+  number: 1
   noarch: python
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x.x") }}
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
   
 requirements:
diff --git a/recipes/bcftools-gtc2vcf-plugin/1.9/affy2vcf.c.patch b/recipes/bcftools-gtc2vcf-plugin/1.9/affy2vcf.c.patch
deleted file mode 100644
index ec89a7b984274..0000000000000
--- a/recipes/bcftools-gtc2vcf-plugin/1.9/affy2vcf.c.patch
+++ /dev/null
@@ -1,119 +0,0 @@
---- gtc2vcf-b890909/affy2vcf.c.orig	2018-10-11 10:20:20.163766095 -0400
-+++ gtc2vcf-b890909/affy2vcf.c	2018-10-11 10:22:47.924639141 -0400
-@@ -192,7 +192,8 @@
- 
-     int moff = 0, *off = NULL;
-     int ncols = ksplit_core(str.s, ',', &moff, &off);
--    for (int i=0; i<ncols; i++)
-+    int i;
-+    for (i=0; i<ncols; i++)
-     {
-         if ( strcmp(&str.s[off[i]], "\"Probe Set ID\"")==0 ) probeset_id = i;
-         else if ( strcmp(&str.s[off[i]], "\"dbSNP RS ID\"")==0 ) dbsnp_id = i;
-@@ -247,7 +248,8 @@
- static void annot_destroy(annot_t *annot)
- {
-     khash_str2int_destroy(annot->probeset_id);
--    for (int i=0; i<annot->n_records; i++)
-+    int i;
-+    for (i=0; i<annot->n_records; i++)
-     {
-         free(annot->records[i].probe_set);
-         free(annot->records[i].dbsnp);
-@@ -297,7 +299,8 @@
- 
- static void report_destroy(report_t *report)
- {
--    for (int i=0; i<report->n_samples; i++) free(report->cel_files[i]);
-+    int i;
-+    for (i=0; i<report->n_samples; i++) free(report->cel_files[i]);
-     free(report->genders);
- }
- 
-@@ -309,7 +312,8 @@
- {
-     bcf_hdr_t *hdr = bcf_hdr_init("w");
-     int n = faidx_nseq(fai);
--    for (int i=0; i<n; i++)
-+    int i;
-+    for (i=0; i<n; i++)
-     {
-         const char *seq = faidx_iseq(fai, i);
-         int len = faidx_seq_len(fai, seq);
-@@ -335,7 +339,8 @@
-                         float *baf,
-                         float *lrr)
- {
--    for (int i=0; i<n; i++) // compute THETA and R
-+    int i;
-+    for (i=0; i<n; i++) // compute THETA and R
-     {
-         float log2x = logf(norm_x[i]) * (float)M_LOG2E;
-         float log2y = logf(norm_y[i]) * (float)M_LOG2E;
-@@ -343,7 +348,7 @@
-         size[i] = ( log2x + log2y ) * 0.5f;
-     }
- 
--    for (int i=0; i<n; i++) // compute LRR and BAF
-+    for (i=0; i<n; i++) // compute LRR and BAF
-     {
-         if ( delta[i] == cluster->ab_delta )
-         {
-@@ -393,7 +398,8 @@
-     ncols = ksplit_core(str.s, '\t', &moff, &off);
-     if ( strcmp(&str.s[off[0]], "probeset_id") ) error("Malformed first line from summary file: %s\n%s\n", summary_fn, str.s);
- 
--    for (int i=1; i<ncols; i++) bcf_hdr_add_sample(hdr, &str.s[off[i]]);
-+    int i;
-+    for (i=1; i<ncols; i++) bcf_hdr_add_sample(hdr, &str.s[off[i]]);
-     if ( bcf_hdr_write(out_fh, hdr) < 0 ) error("Unable to write to output VCF file\n");
-     bcf_hdr_sync( hdr ); // updates the number of samples
- 
-@@ -442,7 +448,8 @@
-         }
-         char *tmp;
-         // read genotypes
--        for (int i=1; i<ncols; i++)
-+        int i;
-+        for (i=1; i<ncols; i++)
-         {
-             int gt = strtol( &str.s[off[i]], &tmp, 10 );
-             switch ( gt )
-@@ -472,17 +479,17 @@
-         if ( hts_getline(confidences_fp, KS_SEP_LINE, &str) <=0 ) error("Confidences file ended prematurely\n");
-         ncols = ksplit_core(str.s, '\t', &moff, &off);
-         if ( ncols != bcf_hdr_nsamples(hdr) + 1 ) error("Expected %d columns but %d columns found in the confidences file\n", bcf_hdr_nsamples(hdr) + 1, ncols);
--        for (int i=1; i<ncols; i++) conf_arr[i-1] = strtof(&str.s[off[i]], &tmp);
-+        for (i=1; i<ncols; i++) conf_arr[i-1] = strtof(&str.s[off[i]], &tmp);
- 
-         // read intensities
-         if ( hts_getline(summary_fp, KS_SEP_LINE, &str) <=0 ) error("Summary file ended prematurely\n");
-         ncols = ksplit_core(str.s, '\t', &moff, &off);
-         if ( ncols != bcf_hdr_nsamples(hdr) + 1 ) error("Expected %d columns but %d columns found in the confidences file\n", bcf_hdr_nsamples(hdr) + 1, ncols);
--        for (int i=1; i<ncols; i++) norm_x_arr[i-1] = strtof(&str.s[off[i]], &tmp);
-+        for (i=1; i<ncols; i++) norm_x_arr[i-1] = strtof(&str.s[off[i]], &tmp);
-         if ( hts_getline(summary_fp, KS_SEP_LINE, &str) <=0 ) error("Summary file ended prematurely\n");
-         ncols = ksplit_core(str.s, '\t', &moff, &off);
-         if ( ncols != bcf_hdr_nsamples(hdr) + 1 ) error("Expected %d columns but %d columns found in the confidences file\n", bcf_hdr_nsamples(hdr) + 1, ncols);
--        for (int i=1; i<ncols; i++) norm_y_arr[i-1] = strtof(&str.s[off[i]], &tmp);
-+        for (i=1; i<ncols; i++) norm_y_arr[i-1] = strtof(&str.s[off[i]], &tmp);
- 
-         // compute LRR and BAF
-         get_lrr_baf(norm_x_arr, norm_y_arr, bcf_hdr_nsamples(hdr), cluster, delta_arr, size_arr, baf_arr, lrr_arr);
-@@ -638,7 +645,8 @@
-         report_t *report = report_init(report_fname);
-         FILE *sex_fh = fopen(sex_fname, "w");
-         if ( !sex_fh ) error("Failed to open %s: %s\n", sex_fname, strerror(errno));
--        for (int i=0; i<report->n_samples; i++) fprintf(sex_fh, "%s\t%d\n", report->cel_files[i], report->genders[i]);
-+        int i;
-+        for (i=0; i<report->n_samples; i++) fprintf(sex_fh, "%s\t%d\n", report->cel_files[i], report->genders[i]);
-         fclose(sex_fh);
-         report_destroy(report);
-     }
-@@ -650,4 +658,4 @@
-     bcf_hdr_destroy(hdr);
-     hts_close(out_fh);
-     return 0;
--}
-\ No newline at end of file
-+}
diff --git a/recipes/bcftools-gtc2vcf-plugin/1.9/build.sh b/recipes/bcftools-gtc2vcf-plugin/1.9/build.sh
deleted file mode 100644
index 207209d5626c3..0000000000000
--- a/recipes/bcftools-gtc2vcf-plugin/1.9/build.sh
+++ /dev/null
@@ -1,35 +0,0 @@
-#!/bin/sh
-
-export VERSION=1.9
-export C_INCLUDE_PATH=${PREFIX}/include
-export CPP_INCLUDE_PATH=${PREFIX}/include
-export CXX_INCLUDE_PATH=${PREFIX}/include
-export CPLUS_INCLUDE_PATH=${PREFIX}/include
-export LIBRARY_PATH=${PREFIX}/lib
-export CPPFLAGS="$CPPFLAGS -I$PREFIX/include"
-export LDFLAGS="$LDFLAGS -L$PREFIX/lib"
-export CFLAGS="$CFLAGS -I$PREFIX/include"
-
-mkdir -p $PREFIX/bin
-mkdir -p $PREFIX/libexec/bcftools
-
-# Copy plugin source to the bcftools plugin directory.
-cp gtc2vcf-b890909/affy2vcf.c bcftools-$VERSION/plugins/
-cp gtc2vcf-b890909/gtc2vcf.c bcftools-$VERSION/plugins/
-
-# Compile htslib and bcftools with affy2vcf and gtc2vcf plugins.
-pushd htslib-$VERSION
-autoheader
-(autoconf || autoconf)
-./configure --disable-bz2 --disable-lzma --prefix=$PREFIX
-make CC=$CC
-popd
-
-pushd bcftools-$VERSION
-make
-popd
-
-# Move custom bcftools plugins to the ~/libexec/bcftools directory.
-mv bcftools-$VERSION/plugins/affy2vcf.so $PREFIX/libexec/bcftools/
-mv bcftools-$VERSION/plugins/fixref.so $PREFIX/libexec/bcftools/
-mv bcftools-$VERSION/plugins/gtc2vcf.so $PREFIX/libexec/bcftools/
diff --git a/recipes/bcftools-gtc2vcf-plugin/1.9/conda_build_config.yaml b/recipes/bcftools-gtc2vcf-plugin/1.9/conda_build_config.yaml
deleted file mode 100644
index 96ee63743f28a..0000000000000
--- a/recipes/bcftools-gtc2vcf-plugin/1.9/conda_build_config.yaml
+++ /dev/null
@@ -1,2 +0,0 @@
-htslib:
-  - 1.9
diff --git a/recipes/bcftools-gtc2vcf-plugin/1.9/fixref.c.patch b/recipes/bcftools-gtc2vcf-plugin/1.9/fixref.c.patch
deleted file mode 100644
index 473e19023a8c0..0000000000000
--- a/recipes/bcftools-gtc2vcf-plugin/1.9/fixref.c.patch
+++ /dev/null
@@ -1,107 +0,0 @@
---- bcftools-1.9/plugins/fixref.c.orig	2018-06-30 03:48:02.000000000 -0400
-+++ bcftools-1.9/plugins/fixref.c	2018-10-03 09:03:07.270160080 -0400
-@@ -90,6 +90,7 @@
- #define MODE_TOP2FWD  2
- #define MODE_FLIP2FWD 3
- #define MODE_USE_ID   4
-+#define MODE_SWAP     6
- 
- typedef struct
- {
-@@ -104,12 +105,14 @@
- typedef struct
- {
-     char *dbsnp_fname;
--    int mode, discard;
-+    int mode, discard, flip_baf;
-     bcf_hdr_t *hdr;
-     faidx_t *fai;
-     int rid, skip_rid;
-     i2m_t *i2m;
-     int32_t *gts, ngts, pos;
-+    float *bafs;
-+    int32_t nbafs;
-     uint32_t nsite,nok,nflip,nunresolved,nswap,nflip_swap,nonSNP,nonACGT,nonbiallelic;
-     uint32_t count[4][4], npos_err, unsorted;
- }
-@@ -130,6 +133,7 @@
-         "       Currently the following modes are recognised:\n"
-         "           flip  .. flips non-ambiguous SNPs and ignores the rest\n"
-         "           id    .. swap REF/ALT and GTs using the ID column to determine the REF allele\n"
-+        "           swap  .. swap REF/ALT columns and GTs and ignore the rest\n"
-         "           stats .. collect and print stats\n"
-         "           top   .. converts from Illumina TOP strand to fwd\n"
-         "\n"
-@@ -148,7 +152,8 @@
-         "   -i, --use-id <file.vcf>     Swap REF/ALT using the ID column to determine the REF allele, implies -m id.\n"
-         "                               Download the dbSNP file from\n"
-         "                                   https://www.ncbi.nlm.nih.gov/variation/docs/human_variation_vcf\n"
--        "   -m, --mode <string>         Collect stats (\"stats\") or convert (\"flip\", \"id\", \"top\") [stats]\n"
-+        "   -m, --mode <string>         Collect stats (\"stats\") or convert (\"flip\", \"id\", \"swap\", \"top\") [stats]\n"
-+        "   -b --flip-baf               Flip BAF when swapping genotypes\n"
-         "\n"
-         "Examples:\n"
-         "   # run stats\n"
-@@ -178,10 +183,11 @@
-         {"discard",no_argument,NULL,'d'},
-         {"fasta-ref",required_argument,NULL,'f'},
-         {"use-id",required_argument,NULL,'i'},
-+        {"flip-baf",no_argument,NULL,'b'},
-         {NULL,0,NULL,0}
-     };
-     int c;
--    while ((c = getopt_long(argc, argv, "?hf:m:di:",loptions,NULL)) >= 0)
-+    while ((c = getopt_long(argc, argv, "?hf:m:di:b:",loptions,NULL)) >= 0)
-     {
-         switch (c) 
-         {
-@@ -190,11 +196,13 @@
-                 else if ( !strcasecmp(optarg,"flip") ) args.mode = MODE_FLIP2FWD; 
-                 else if ( !strcasecmp(optarg,"id") ) args.mode = MODE_USE_ID; 
-                 else if ( !strcasecmp(optarg,"stats") ) args.mode = MODE_STATS; 
-+                else if ( !strcasecmp(optarg,"swap") ) args.mode = MODE_SWAP; 
-                 else error("The source strand convention not recognised: %s\n", optarg);
-                 break;
-             case 'i': args.dbsnp_fname = optarg; args.mode = MODE_USE_ID; break;
-             case 'd': args.discard = 1; break;
-             case 'f': ref_fname = optarg; break;
-+            case 'b': args.flip_baf = 1; break;
-             case 'h':
-             case '?':
-             default: error("%s", usage()); break;
-@@ -231,6 +239,13 @@
-         }
-     }
-     bcf_update_genotypes(args->hdr,rec,args->gts,args->ngts);
-+
-+    if (args->flip_baf && bcf_get_format_float(args->hdr, rec, "BAF", &args->bafs, &args->nbafs) >= 0)
-+    {
-+        float *ptr = args->bafs;
-+        for (i=0; i<args->nbafs; i++, ptr++) *ptr = 1 - *ptr;
-+        bcf_update_format_float(args->hdr, rec, "BAF", args->bafs, args->nbafs);
-+    }
-     
-     return rec;
- }
-@@ -430,6 +445,13 @@
-         if ( ir==revint(ib) ) { args.nflip_swap++; return set_ref_alt(&args,rec,int2nt(revint(ib)),int2nt(revint(ia)),1); }
-         error("FIXME: this should not happen %s:%d\n", bcf_seqname(args.hdr,rec),rec->pos+1);
-     }
-+    else if ( args.mode==MODE_SWAP )
-+    {
-+        if ( ir==ia ) return ret;
-+        if ( ir==ib ) { args.nswap++; return set_ref_alt(&args,rec,int2nt(ib),int2nt(ia),1); }
-+        args.nunresolved++;
-+        return args.discard ? NULL : ret;
-+    }
-     else if ( args.mode==MODE_TOP2FWD )
-     {
-         int pair = 1 << ia | 1 << ib;
-@@ -567,6 +589,7 @@
-     fprintf(stderr,"NS\tnon-biallelic\t%u\n", args.nonbiallelic);
- 
-     free(args.gts);
-+    free(args.bafs);
-     if ( args.fai ) fai_destroy(args.fai);
-     if ( args.i2m ) kh_destroy(i2m, args.i2m);
- }
diff --git a/recipes/bcftools-gtc2vcf-plugin/1.9/gtc2vcf.c.patch b/recipes/bcftools-gtc2vcf-plugin/1.9/gtc2vcf.c.patch
deleted file mode 100644
index fd43df0fc62b6..0000000000000
--- a/recipes/bcftools-gtc2vcf-plugin/1.9/gtc2vcf.c.patch
+++ /dev/null
@@ -1,410 +0,0 @@
---- gtc2vcf-b890909/gtc2vcf.c.orig	2018-10-11 10:31:54.875895471 -0400
-+++ gtc2vcf-b890909/gtc2vcf.c	2018-10-11 10:55:39.935944745 -0400
-@@ -66,7 +66,8 @@
-     else
-     {
-         int c = 0;
--        for (int i=0; i<nbytes; i++) c = hgetc(fp);
-+        int i;
-+        for (i=0; i<nbytes; i++) c = hgetc(fp);
-         if ( c == EOF ) error("Failed to reposition stream forward %ld bytes\n", nbytes);
-     }
- }
-@@ -96,7 +97,8 @@
-     else
-     {
-         int c = 0;
--        for (int i=0; i<nmemb * size; i++) c = hgetc(fp);
-+        int i;
-+        for (i=0; i<nmemb * size; i++) c = hgetc(fp);
-         if ( c == EOF ) error("Failed to reposition stream forward %ld bytes\n", nmemb * size);
-     }
- }
-@@ -295,7 +297,7 @@
-         case RUN_INFO:
-             read_bytes(idat->fp, (void *)&idat->m_run_infos, sizeof(int32_t));
-             idat->run_infos = (RunInfo *)malloc(idat->m_run_infos * sizeof(RunInfo));
--            for (int i=0; i<idat->m_run_infos; i++)
-+            for (i=0; i<idat->m_run_infos; i++)
-             {
-                 read_pfx_string(idat->fp, &idat->run_infos[i].run_time, NULL);
-                 read_pfx_string(idat->fp, &idat->run_infos[i].block_type, NULL);
-@@ -329,13 +331,14 @@
-     read_bytes(idat->fp, (void *)&idat->number_toc_entries, sizeof(int32_t));
-     idat->id = (uint16_t *)malloc(idat->number_toc_entries * sizeof(uint16_t));
-     idat->toc = (int64_t *)malloc(idat->number_toc_entries * sizeof(int64_t));
--    for (int i=0; i<idat->number_toc_entries; i++)
-+    int i;
-+    for (i=0; i<idat->number_toc_entries; i++)
-     {
-         read_bytes(idat->fp, (void *)&idat->id[i], sizeof(uint16_t));
-         read_bytes(idat->fp, (void *)&idat->toc[i], sizeof(int64_t));
-     }
- 
--    for (int i=0; i<idat->number_toc_entries; i++) idat_read(idat, idat->id[i]);
-+    for (i=0; i<idat->number_toc_entries; i++) idat_read(idat, idat->id[i]);
- 
-     return idat;
- }
-@@ -358,7 +361,8 @@
-     free(idat->unknown5);
-     free(idat->unknown6);
-     free(idat->unknown7);
--    for (int i=0; i<idat->m_run_infos; i++)
-+    int i;
-+    for (i=0; i<idat->m_run_infos; i++)
-     {
-         free(idat->run_infos[i].run_time);
-         free(idat->run_infos[i].block_type);
-@@ -402,7 +406,8 @@
-     fprintf(stream, "Mid Blocks Count ,%d\n", idat->mid_block->item_num);
-     fprintf(stream, "[Assay]\n");
-     fprintf(stream, "IlmnID,Sd,Mean,Nbeads\n");
--    for (int i=0; i<idat->num_snps; i++)
-+    int i;
-+    for (i=0; i<idat->num_snps; i++)
-     {
-         int32_t ilmn_id;
-         get_element(idat->ilmn_id, (void *)&ilmn_id, i);
-@@ -415,14 +420,14 @@
-         fprintf(stream, "%d,%d,%d,%d\n", ilmn_id, sd, mean, nbeads);
-     }
-     fprintf(stream, "[Mid Blocks]\n");
--    for (int i=0; i<idat->mid_block->item_num; i++)
-+    for (i=0; i<idat->mid_block->item_num; i++)
-     {
-         int8_t mid_block;
-         get_element(idat->mid_block, (void *)&mid_block, i);
-         fprintf(stream, "%d\n", mid_block);
-     }
-     fprintf(stream, "[Run Infos]\n");
--    for (int i=0; i<idat->m_run_infos; i++)
-+    for (i=0; i<idat->m_run_infos; i++)
-     {
-         fprintf(stream, "%s\t%s\t%s\t%s\t%s\n", idat->run_infos[i].run_time, idat->run_infos[i].block_type,
-         idat->run_infos[i].block_pars, idat->run_infos[i].block_code, idat->run_infos[i].code_version);
-@@ -546,17 +551,18 @@
- static uint8_t *bpm_norm_lookups(bpm_t *bpm)
- {
-     uint8_t sorted_norm_ids[256];
--    for (int i=0; i<256; i++) sorted_norm_ids[i] = 0xFF;
--    for (int i=0; i<bpm->num_loci; i++)
-+    int i;
-+    for (i=0; i<256; i++) sorted_norm_ids[i] = 0xFF;
-+    for (i=0; i<bpm->num_loci; i++)
-     {
-         int norm_id = bpm->locus_entries[i].norm_id;
-         sorted_norm_ids[norm_id] = norm_id;
-     }
-     int j=0;
--    for (int i=0; i<256; i++) if ( sorted_norm_ids[i] != 0xFF ) sorted_norm_ids[j++] = sorted_norm_ids[i];
-+    for (i=0; i<256; i++) if ( sorted_norm_ids[i] != 0xFF ) sorted_norm_ids[j++] = sorted_norm_ids[i];
-     uint8_t *norm_lookups = (uint8_t *)malloc(256 * sizeof(uint8_t *));
-     memset((void *)norm_lookups, 0xFF, 256 * sizeof(uint8_t *));
--    for (int i=0; i<j; i++) norm_lookups[sorted_norm_ids[i]] = i;
-+    for (i=0; i<j; i++) norm_lookups[sorted_norm_ids[i]] = i;
-     return norm_lookups;
- }
- 
-@@ -583,12 +589,13 @@
-     read_bytes(bpm->fp, (void *)&bpm->num_loci, sizeof(int32_t));
-     read_array(bpm->fp, (void **)&bpm->indexes, NULL, bpm->num_loci, sizeof(int32_t), 0);
-     bpm->names = (char **)malloc(bpm->num_loci * sizeof(char *));
--    for (int i=0; i<bpm->num_loci; i++) read_pfx_string(bpm->fp, &bpm->names[i], NULL);
-+    int i;
-+    for (i=0; i<bpm->num_loci; i++) read_pfx_string(bpm->fp, &bpm->names[i], NULL);
-     read_array(bpm->fp, (void **)&bpm->norm_ids, NULL, bpm->num_loci, sizeof(uint8_t), 0);
- 
-     bpm->locus_entries = (LocusEntry *)malloc(bpm->num_loci * sizeof(LocusEntry));
-     LocusEntry locus_entry;
--    for (int i=0; i<bpm->num_loci; i++)
-+    for (i=0; i<bpm->num_loci; i++)
-     {
-         memset(&locus_entry, 0, sizeof(LocusEntry));
-         locusentry_read(&locus_entry, bpm->fp);
-@@ -599,14 +606,14 @@
-         memcpy(&bpm->locus_entries[ idx ], &locus_entry, sizeof(LocusEntry));
-     }
-     bpm->norm_lookups = bpm_norm_lookups(bpm);
--    for (int i=0; i<bpm->num_loci; i++)
-+    for (i=0; i<bpm->num_loci; i++)
-     {
-         if ( i != bpm->locus_entries[i].index - 1 ) error("Manifest format error: read invalid number of assay entries\n");
-     }
- 
-     read_bytes(bpm->fp, (void *)&bpm->m_header, sizeof(int32_t));
-     bpm->header = (char **)malloc(bpm->m_header * sizeof(char *));
--    for (int i=0; i<bpm->m_header; i++) read_pfx_string(bpm->fp, &bpm->header[i], NULL);
-+    for (i=0; i<bpm->m_header; i++) read_pfx_string(bpm->fp, &bpm->header[i], NULL);
- 
-     if ( !heof(bpm->fp) ) error("BPM reader did not reach the end of file %s at position %ld\n", bpm->fn, htell(bpm->fp));
- 
-@@ -621,13 +628,14 @@
-     free(bpm->manifest_name);
-     free(bpm->control_config);
-     free(bpm->indexes);
-+    int i;
-     if ( bpm->names )
-     {
--        for (int i=0; i<bpm->num_loci; i++) free(bpm->names[i]);
-+        for (i=0; i<bpm->num_loci; i++) free(bpm->names[i]);
-         free(bpm->names);
-     }
-     free(bpm->norm_ids);
--    for (int i=0; i<bpm->num_loci; i++)
-+    for (i=0; i<bpm->num_loci; i++)
-     {
-         free(bpm->locus_entries[i].ilmn_id);
-         free(bpm->locus_entries[i].name);
-@@ -650,7 +658,7 @@
-     }
-     free(bpm->locus_entries);
-     free(bpm->norm_lookups);
--    for (int i=0; i<bpm->m_header; i++) free(bpm->header[i]);
-+    for (i=0; i<bpm->m_header; i++) free(bpm->header[i]);
-     free(bpm->header);
-     free(bpm);
- }
-@@ -664,9 +672,10 @@
- 
- static void bpm_to_csv(const bpm_t *bpm, FILE *stream)
- {
--    for (int i=0; i<bpm->m_header; i++) fprintf(stream, "%s\n", bpm->header[i]);
-+    int i;
-+    for (i=0; i<bpm->m_header; i++) fprintf(stream, "%s\n", bpm->header[i]);
-     fprintf(stream, "Index,NormID,IlmnID,Name,IlmnStrand,SNP,AddressA_ID,AlleleA_ProbeSeq,AddressB_ID,AlleleB_ProbeSeq,GenomeBuild,Chr,MapInfo,Ploidy,Species,Source,SourceVersion,SourceStrand,SourceSeq,TopGenomicSeq,BeadSetID,Exp_Clusters,Intensity_Only,Assay_Type,Frac A,Frac C,Frac G,Frac T,RefStrand\n");
--    for (int i=0; i<bpm->num_loci; i++)
-+    for (i=0; i<bpm->num_loci; i++)
-     {
-         LocusEntry *locus_entry = &bpm->locus_entries[i];
-         fprintf(stream, "%d,%d,%s,%s,%s,%s,%010d,,%010d,,%s,%s,%s,%s,%s,%s,,%s,,,,%d,%d,%d,%f,%f,%f,%f,%s\n",
-@@ -813,7 +822,8 @@
-     int moff = 0, *off = NULL;
-     bpm->m_header = ksplit_core(str.s, '\n', &moff, &off);
-     bpm->header = (char **)malloc(bpm->m_header * sizeof(char *));
--    for (int i=0; i<bpm->m_header; i++) bpm->header[i] = strdup(&str.s[off[i]]);
-+    int i;
-+    for (i=0; i<bpm->m_header; i++) bpm->header[i] = strdup(&str.s[off[i]]);
-     free(off);
- 
-     str.l = 0;
-@@ -851,7 +861,7 @@
-     tsv_register(tsv, "RefStrand", tsv_read_string, &locus_entry.ref_strand);
- 
-     bpm->locus_entries = (LocusEntry *)malloc(bpm->num_loci * sizeof(LocusEntry));
--    for (int i=0; i<bpm->num_loci; i++)
-+    for (i=0; i<bpm->num_loci; i++)
-     {
-         memset(&locus_entry, 0, sizeof(LocusEntry));
-         locus_entry.norm_id = 0xFF;
-@@ -959,6 +969,7 @@
-     egt_t *egt = (egt_t *)calloc(1, sizeof(egt_t));
-     egt->fn = strdup(fn);
-     egt->fp = hopen(egt->fn, "rb");
-+    int i;
-     if ( egt->fp == NULL ) error("Could not open %s\n", egt->fn);
-     if ( is_gzip(egt->fp) ) error("File %s is gzip compressed and currently cannot be seeked\n", egt->fn);
- 
-@@ -982,21 +993,21 @@
- 
-     read_bytes(egt->fp, (void *)&egt->num_records, sizeof(int32_t));
-     egt->cluster_records = (ClusterRecord *)malloc(egt->num_records * sizeof(ClusterRecord));
--    for (int i=0; i<egt->num_records; i++) clusterrecord_read(&egt->cluster_records[i], egt->fp);
--    for (int i=0; i<egt->num_records; i++) clusterscore_read(&egt->cluster_records[i].cluster_score, egt->fp);
-+    for (i=0; i<egt->num_records; i++) clusterrecord_read(&egt->cluster_records[i], egt->fp);
-+    for (i=0; i<egt->num_records; i++) clusterscore_read(&egt->cluster_records[i].cluster_score, egt->fp);
- 
-     // toss useless strings such as aa_ab_bb/aa_ab/aa_bb/ab_bb
--    for (int i=0; i<egt->num_records; i++) read_pfx_string(egt->fp, NULL, NULL);
-+    for (i=0; i<egt->num_records; i++) read_pfx_string(egt->fp, NULL, NULL);
- 
-     egt->loci_names = (char **)malloc(egt->num_records * sizeof(char *));
--    for (int i=0; i<egt->num_records; i++)
-+    for (i=0; i<egt->num_records; i++)
-     {
-         read_pfx_string(egt->fp, &egt->loci_names[i], NULL);
-     }
--    for (int i=0; i<egt->num_records; i++) read_bytes(egt->fp, (void *)&egt->cluster_records[i].address, sizeof(int32_t));
-+    for (i=0; i<egt->num_records; i++) read_bytes(egt->fp, (void *)&egt->cluster_records[i].address, sizeof(int32_t));
- 
-     int32_t aa_n, ab_n, bb_n;
--    for (int i=0; i<egt->num_records; i++)
-+    for (i=0; i<egt->num_records; i++)
-     {
-         read_bytes(egt->fp, (void *)&aa_n, sizeof(int32_t));
-         read_bytes(egt->fp, (void *)&ab_n, sizeof(int32_t));
-@@ -1025,7 +1036,8 @@
-     free(egt->date_created);
-     free(egt->manifest_name);
-     free(egt->cluster_records);
--    for (int i=0; i<egt->num_records; i++) free(egt->loci_names[i]);
-+    int i;
-+    for (i=0; i<egt->num_records; i++) free(egt->loci_names[i]);
-     free(egt->loci_names);
-     free(egt);
- }
-@@ -1056,7 +1068,8 @@
-     fprintf(stream, "Records Count ,%d\n", egt->num_records);
-     fprintf(stream, "[Assay]\n");
-     fprintf(stream, "Name,AA.N,AA.R_dev,AA.R_mean,AA.Theta_dev,AA.Theta_mean,AB.N,AB.R_dev,AB.R_mean,AB.Theta_dev,AB.Theta_mean,BB.N,BB.R_dev,BB.R_mean,BB.Theta_dev,BB.Theta_mean,Intensity Threshold,Cluster Separation,GenTrain Score,Original Score,Edited,Address\n");
--    for (int i=0; i<egt->num_records; i++)
-+    int i;
-+    for (i=0; i<egt->num_records; i++)
-     {
-         ClusterRecord *cluster_record = &egt->cluster_records[i];
-         fprintf(stream, "%s,%d,%f,%f,%f,%f,%d,%f,%f,%f,%f,%d,%f,%f,%f,%f,%f,%f,%f,%f,%d,%d\n",
-@@ -1341,17 +1354,18 @@
-     read_bytes(gtc->fp, (void *)&gtc->number_toc_entries, sizeof(int32_t));
-     gtc->id = (uint16_t *)malloc(gtc->number_toc_entries * sizeof(uint16_t));
-     gtc->toc = (int32_t *)malloc(gtc->number_toc_entries * sizeof(int32_t));
--    for (int i=0; i<gtc->number_toc_entries; i++)
-+    int i;
-+    for (i=0; i<gtc->number_toc_entries; i++)
-     {
-         read_bytes(gtc->fp, (void *)&gtc->id[i], sizeof(uint16_t));
-         read_bytes(gtc->fp, (void *)&gtc->toc[i], sizeof(int32_t));
-     }
- 
--    for (int i=0; i<gtc->number_toc_entries; i++) gtc_read(gtc, gtc->id[i]);
-+    for (i=0; i<gtc->number_toc_entries; i++) gtc_read(gtc, gtc->id[i]);
- 
-     gtc->sin_theta = (float *)malloc(gtc->m_normalization_transforms * sizeof(float));
-     gtc->cos_theta = (float *)malloc(gtc->m_normalization_transforms * sizeof(float));
--    for (int i=0; i<gtc->m_normalization_transforms; i++)
-+    for (i=0; i<gtc->m_normalization_transforms; i++)
-     {
-         gtc->sin_theta[i] = sinf(gtc->normalization_transforms[i].theta);
-         gtc->cos_theta[i] = cosf(gtc->normalization_transforms[i].theta);
-@@ -1450,7 +1464,8 @@
-     fprintf(stream, "SNP Count ,%d\n", gtc->num_snps);
-     fprintf(stream, "[Assay]\n");
-     fprintf(stream, "Raw X,Raw Y,GType,Top Alleles,Score,B Allele Freq,Log R Ratio\n");
--    for (int i=0; i<gtc->num_snps; i++)
-+    int i;
-+    for (i=0; i<gtc->num_snps; i++)
-     {
-         uint16_t raw_x = 0, raw_y = 0;
-         get_element(gtc->raw_x, (void *)&raw_x, i);
-@@ -1468,7 +1483,7 @@
-     }
-     fprintf(stream, "[Normalization Transforms]\n");
-     fprintf(stream, "Version,Offset X,Offset Y,Scale X,Scale Y,Shear,Theta\n");
--    for (int i=0; i<gtc->m_normalization_transforms; i++)
-+    for (i=0; i<gtc->m_normalization_transforms; i++)
-     {
-         fprintf(stream, "%d,%f,%f,%f,%f,%f,%f\n",
-             gtc->normalization_transforms[i].version,
-@@ -1595,11 +1610,13 @@
- {
-     // print header
-     fprintf(stream, "Index\tName\tAddress\tChr\tPosition\tGenTrain Score\tFrac A\tFrac C\tFrac G\tFrac T");
--    for (int i=0; i<n; i++) fprintf(stream, "\t%s.GType\t%s.Score\t%s.Theta\t%s.R\t%s.B Allele Freq\t%s.Log R Ratio\t%s.Top Alleles\t%s.Plus/Minus Alleles", gtc[i]->sample_name, gtc[i]->sample_name, gtc[i]->sample_name, gtc[i]->sample_name, gtc[i]->sample_name, gtc[i]->sample_name, gtc[i]->sample_name, gtc[i]->sample_name);
-+    int i;
-+    for (i=0; i<n; i++) fprintf(stream, "\t%s.GType\t%s.Score\t%s.Theta\t%s.R\t%s.B Allele Freq\t%s.Log R Ratio\t%s.Top Alleles\t%s.Plus/Minus Alleles", gtc[i]->sample_name, gtc[i]->sample_name, gtc[i]->sample_name, gtc[i]->sample_name, gtc[i]->sample_name, gtc[i]->sample_name, gtc[i]->sample_name, gtc[i]->sample_name);
-     fprintf(stream, "\n");
- 
-     // print loci
--    for (int j=0; j<bpm->num_loci; j++)
-+    int j;
-+    for (j=0; j<bpm->num_loci; j++)
-     {
-         fprintf(stream, "%d\t%s\t%d\t%s\t%s\t%f\t%f\t%f\t%f\t%f", bpm->indexes[j],
-                                                                   bpm->names[j],
-@@ -1611,7 +1628,7 @@
-                                                                   bpm->locus_entries[j].frac_c,
-                                                                   bpm->locus_entries[j].frac_g,
-                                                                   bpm->locus_entries[j].frac_t);
--        for (int i=0; i<n; i++)
-+        for (i=0; i<n; i++)
-         {
-             uint8_t genotype;
-             get_element(gtc[i]->genotypes, (void *)&genotype, j);
-@@ -1663,7 +1680,8 @@
- {
-     bcf_hdr_t *hdr = bcf_hdr_init("w");
-     int n = faidx_nseq(fai);
--    for (int i=0; i<n; i++)
-+    int i;
-+    for (i=0; i<n; i++)
-     {
-         const char *seq = faidx_iseq(fai, i);
-         int len = faidx_seq_len(fai, seq);
-@@ -1703,7 +1721,8 @@
-     int32_t *raw_x = (int32_t *) malloc(n * sizeof(int32_t));
-     int32_t *raw_y = (int32_t *) malloc(n * sizeof(int32_t));
- 
--    for (int j=0; j<bpm->num_loci; j++)
-+    int j;
-+    for (j=0; j<bpm->num_loci; j++)
-     {
-         bcf_clear(rec);
-         rec->rid = bcf_hdr_name2id_flexible(hdr, bpm->locus_entries[j].chrom);
-@@ -1721,7 +1740,8 @@
-             b_top[0] = revnt(b_top[0]);
-         }
-         bcf_update_alleles(hdr, rec, alleles, 2);
--        for (int i=0; i<n; i++)
-+        int i;
-+        for (i=0; i<n; i++)
-         {
-             uint8_t genotype;
-             get_element(gtc[i]->genotypes, (void *)&genotype, j);
-@@ -1927,7 +1947,8 @@
-     int moff = 0, *off = NULL, ncols = ksplit_core(line.s, '\t', &moff, &off);
-     kstring_t str = {0, 0, NULL};
-     int *col2sample = (int *) malloc(sizeof(int)*ncols);
--    for (int i=0; i<ncols; i++)
-+    int i;
-+    for (i=0; i<ncols; i++)
-     {
-         char *ptr;
-         if ( i>0 ) ksprintf(&str, ",");
-@@ -2144,7 +2165,8 @@
- {
-     int flags = 0, n;
-     char **tags = hts_readlist(str, 0, &n);
--    for (int i=0; i<n; i++)
-+    int i;
-+    for (i=0; i<n; i++)
-     {
-         if ( !strcasecmp(tags[i], "IGC") ) flags |= IGC;
-         else if ( !strcasecmp(tags[i], "X") ) flags |= X;
-@@ -2198,6 +2220,7 @@
-     htsFile *out_fh = NULL;
-     FILE *out_txt = NULL;
-     FILE *out_sex = NULL;
-+    int i;
- 
-     static struct option loptions[] =
-     {
-@@ -2327,7 +2350,7 @@
-     }
- 
-     gtc_t **gtc = (gtc_t **)malloc(nfiles * sizeof(gtc_t *));
--    for (int i=0; i<nfiles; i++)
-+    for (i=0; i<nfiles; i++)
-     {
-         fprintf(stderr, "================================================================================\n");
-         fprintf(stderr, "Reading GTC file %s\n", files[i]);
-@@ -2355,7 +2378,7 @@
-             }
-             else
-             {
--                for (int i=0; i<nfiles; i++)
-+                for (i=0; i<nfiles; i++)
-                 {
-                     char *ptr = strrchr(gtc[i]->fn, '/');
-                     char *str = ptr ? ptr+1 : gtc[i]->fn;
-@@ -2376,10 +2399,10 @@
-     bpm_destroy(bpm);
-     if ( gtc_list )
-     {
--        for (int i=0; i<nfiles; i++) free(files[i]);
-+        for (i=0; i<nfiles; i++) free(files[i]);
-         free(files);
-     }
--    for (int i=0; i<nfiles; i++) gtc_destroy(gtc[i]);
-+    for (i=0; i<nfiles; i++) gtc_destroy(gtc[i]);
-     free(gtc);
-     if (out_sex && out_sex != stdout && out_sex != stderr) fclose(out_sex);
-     return 0;
diff --git a/recipes/bcftools-gtc2vcf-plugin/1.9/meta.yaml b/recipes/bcftools-gtc2vcf-plugin/1.9/meta.yaml
deleted file mode 100644
index 1c121b169c6d1..0000000000000
--- a/recipes/bcftools-gtc2vcf-plugin/1.9/meta.yaml
+++ /dev/null
@@ -1,40 +0,0 @@
-{% set version = "1.9" %}
-{% set sha256 = "f4081b2636b0f24f5df841a3e732ca04ff0d21090b0ad10cae4dfdc5aef066e1" %}
-
-package:
-  name: bcftools-gtc2vcf-plugin
-  version: {{version}}
-
-source:
-  url: https://github.com/freeseek/gtc2vcf/archive/b890909.tar.gz
-  sha256: {{sha256}}
-  patches:
-    - affy2vcf.c.patch
-    - gtc2vcf.c.patch
-
-build:
-  number: 2
-  skip: true  # [osx]
-
-requirements:
-  build:
-    - make
-    - {{ compiler('c') }}
-    - autoconf
-  host:
-    - htslib
-    - bcftools {{version}}
-  run:
-    - bcftools {{version}}
-    - htslib
-
-test:
-  commands:
-    - bcftools plugin -lv | grep affy2vcf
-    - bcftools plugin -lv | grep fixref
-    - bcftools plugin -lv | grep gtc2vcf
-
-about:
-  home: https://github.com/freeseek/gtc2vcf
-  license: MIT
-  summary: Tools to convert Illumina and Affymetrix array intensity data files into VCF files.
diff --git a/recipes/bcftools-gtc2vcf-plugin/build.sh b/recipes/bcftools-gtc2vcf-plugin/build.sh
index ea2cd909269e0..cb54caaac4890 100644
--- a/recipes/bcftools-gtc2vcf-plugin/build.sh
+++ b/recipes/bcftools-gtc2vcf-plugin/build.sh
@@ -1,6 +1,6 @@
 #!/bin/sh
 
-export VERSION=1.16
+export VERSION=${PKG_VERSION}
 export C_INCLUDE_PATH=${PREFIX}/include
 export CPP_INCLUDE_PATH=${PREFIX}/include
 export CXX_INCLUDE_PATH=${PREFIX}/include
diff --git a/recipes/bcftools-gtc2vcf-plugin/conda_build_config.yaml b/recipes/bcftools-gtc2vcf-plugin/conda_build_config.yaml
index 1337298511f6a..f357a8e159d8b 100644
--- a/recipes/bcftools-gtc2vcf-plugin/conda_build_config.yaml
+++ b/recipes/bcftools-gtc2vcf-plugin/conda_build_config.yaml
@@ -1,7 +1,7 @@
 htslib:
-  - 1.16
+  - 1.19
 bcftools:
-  - 1.16
+  - 1.19
 pin_run_as_build:
   htslib: x.x
   bcftools: x.x
diff --git a/recipes/bcftools-gtc2vcf-plugin/meta.yaml b/recipes/bcftools-gtc2vcf-plugin/meta.yaml
index 9d316e47c5f74..414d0485f8c57 100644
--- a/recipes/bcftools-gtc2vcf-plugin/meta.yaml
+++ b/recipes/bcftools-gtc2vcf-plugin/meta.yaml
@@ -1,7 +1,7 @@
 {% set name = "bcftools-gtc2vcf-plugin" %}
-{% set version = "1.16" %}
-{% set sha256 = "b72bde552d2c64ac1a05e35bc9640330881b4e65eacb3d17740053d634077e01" %}
-{% set git_commit = "80173e1" %}
+{% set version = "1.19" %}
+{% set sha256 = "4fb67f39d9599970b202fe5af01d5549088710970d44256b00ee78c25c57289f" %}
+{% set git_commit = "1898320" %}
 
 package:
   name: {{name|lower}}
@@ -13,11 +13,13 @@ source:
     sha256: {{sha256}}
   - folder: bcftools
     url: https://github.com/samtools/bcftools/releases/download/{{version}}/bcftools-{{version}}.tar.bz2
-    sha256: "90bf647c9ad79e10a243b8058c873de057fd7012e250d5ae6574839787a2ecd6"
+    sha256: "782b5f1bc690415192231e82213b3493b047f45e630dc8ef6f154d6126ab3e68"
 
 build:
-  number: 0
+  number: 1
   skip: true  # [osx]
+  run_exports:
+    - {{ pin_subpackage("bcftools-gtc2vcf-plugin", max_pin="x") }}
 
 requirements:
   build:
@@ -27,6 +29,7 @@ requirements:
   host:
     - gsl
     - zlib
+    - {{ pin_compatible('bcftools') }}
     - {{ pin_compatible('htslib') }}
   run:
     - gsl
@@ -42,3 +45,7 @@ about:
   home: https://github.com/freeseek/gtc2vcf
   license: MIT
   summary: Tools to convert Illumina and Affymetrix array intensity data files into VCF files.
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/bcftools/meta.yaml b/recipes/bcftools/meta.yaml
index fcb21d9815d24..6641ea2aeb54d 100644
--- a/recipes/bcftools/meta.yaml
+++ b/recipes/bcftools/meta.yaml
@@ -1,15 +1,17 @@
-{% set version="1.17" %}
+{% set version="1.20" %}
 
 package:
   name: bcftools
   version: {{ version }}
 
 build:
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("bcftools", max_pin="x") }}
 
 source:
   url: https://github.com/samtools/bcftools/releases/download/{{ version }}/bcftools-{{ version }}.tar.bz2
-  sha256: 01f75d8e701d85b2c759172412009cc04f29b61616ace2fa75116123de4596cc
+  sha256: 312b8329de5130dd3a37678c712951e61e5771557c7129a70a327a300fda8620
 
 requirements:
   build:
@@ -20,12 +22,9 @@ requirements:
     - zlib
     - gsl
   run:
-    - gsl
-    - htslib
     # Currently removed due to size and dependency issues
     #- matplotlib # for plot-vcfstats
     #- tectonic # for plot-vcfstats
-    - zlib
     - perl
 
 test:
@@ -49,6 +48,8 @@ about:
     VCF and BCF and streams will work in most, but not all situations.
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:bcftools
     - usegalaxy-eu:bcftools_merge
diff --git a/recipes/bcov/meta.yaml b/recipes/bcov/meta.yaml
index ed9b0afbe2fd2..a4d012b14a847 100644
--- a/recipes/bcov/meta.yaml
+++ b/recipes/bcov/meta.yaml
@@ -6,7 +6,9 @@ package:
   version: {{ version }}
 
 build:
-  number: 7
+  number: 8
+  run_exports:
+    - {{ pin_subpackage("bcov", max_pin="x.x.x") }}  
 
 source:
   url: http://biocomp.unibo.it/savojard/bcov/bcov-1.0.tar.gz
@@ -40,3 +42,5 @@ extra:
   identifiers:
     - biotools:bcov
     - doi:10.1093/bioinformatics/btt555
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/beacon2-import/LICENSE b/recipes/beacon2-import/LICENSE
new file mode 100644
index 0000000000000..08da4102474eb
--- /dev/null
+++ b/recipes/beacon2-import/LICENSE
@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2023 European Galaxy Project
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.
diff --git a/recipes/beacon2-import/meta.yaml b/recipes/beacon2-import/meta.yaml
new file mode 100644
index 0000000000000..70ad85235693b
--- /dev/null
+++ b/recipes/beacon2-import/meta.yaml
@@ -0,0 +1,56 @@
+{% set name = "beacon2-import" %}
+{% set version = "1.0.8" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/beacon2-import-{{ version }}.tar.gz
+  sha256: 5f55afebd5c5a57c188e3a691bb2fac72f572298e699242803e995e005435e3e
+
+build:
+  entry_points:
+    - beacon2-import = beacon2_import.beacon2_import:beacon2_import
+    - beacon2-search = beacon2_search.beacon2_search:beacon_query
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('beacon2-import', max_pin="x") }}
+
+requirements:
+  host:
+    - python 
+    - pip
+  run:
+    - python
+    - jsonschema
+    - dataclasses
+    - bioblend  =0.10.0
+    - cyvcf2
+    - pymongo
+
+test:
+  imports:
+    - beacon2_import
+    - beacon2_search
+    - utils
+  commands:
+    - pip check
+    - beacon2-import --help
+    - beacon2-search --help
+  requires:
+    - python
+    - pip
+
+about:
+  home: https://pypi.org/project/beacon2-import/
+  summary: Seamlessly import and query genomic variant data from a beacon
+  description: "Effortlessly import genetic variants from targeted Galaxy histories or local repositories into your beacon instance with our utility. Simplify querying and analysis of genetic data, enabling comprehensive genetic inquiries with ease"
+  license: CC-BY-NC-4.0
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - khaled196
diff --git a/recipes/beacon2-ri-tools/build.sh b/recipes/beacon2-ri-tools/build.sh
new file mode 100644
index 0000000000000..c01535473e06f
--- /dev/null
+++ b/recipes/beacon2-ri-tools/build.sh
@@ -0,0 +1,63 @@
+#!/bin/bash
+
+set -exo pipefail
+
+mkdir -p $PREFIX/etc/conda/activate.d/
+echo "export BEACON_SOURCE_DIR=$PREFIX/opt/BEACON" > $PREFIX/etc/conda/activate.d/beacon2-ri-tools-sourcedir.sh
+chmod a+x $PREFIX/etc/conda/activate.d/beacon2-ri-tools-sourcedir.sh
+
+mkdir -p $PREFIX/etc/conda/deactivate.d/
+echo "unset BEACON_SOURCE_DIR" > $PREFIX/etc/conda/deactivate.d/beacon2-ri-tools-sourcedir.sh
+chmod a+x $PREFIX/etc/conda/deactivate.d/beacon2-ri-tools-sourcedir.sh
+
+
+
+cd $SRC_DIR
+
+mkdir -p $PREFIX/lib/perl5/site_perl/BEACON
+cp -R BEACON/Help.pm $PREFIX/lib/perl5/site_perl/BEACON
+cp -R BEACON/Config.pm $PREFIX/lib/perl5/site_perl/BEACON
+cp -R BEACON/Beacon.pm $PREFIX/lib/perl5/site_perl/BEACON
+cp -R BEACON/bin/BFF.pm $PREFIX/lib/perl5/site_perl
+cp -R BEACON/bin/*.sh $PREFIX/lib/perl5/site_perl
+cp -R utils/bff_api/bff-api $PREFIX/lib/perl5/site_perl
+cp -R utils/bff_queue/bff-queue $PREFIX/lib/perl5/site_perl
+cp -R utils/bff_queue/minion_ui.pl $PREFIX/lib/perl5/site_perl
+cp -R utils/models2xlsx/parse_defaultSchema.pl $PREFIX/lib/perl5/site_perl
+
+
+chmod a+x $PREFIX/lib/perl5/site_perl/BEACON/*
+chmod a+x $PREFIX/lib/perl5/site_perl/BFF.pm
+chmod a+x $PREFIX/lib/perl5/site_perl/*.sh
+chmod a+x $PREFIX/lib/perl5/site_perl/*.pl
+chmod a+x $PREFIX/lib/perl5/site_perl/bff-*
+
+sed -i.bak 's|../src/perl5|../opt/beacon2-ri-tools/src/perl5|g' $PREFIX/lib/perl5/site_perl/BEACON/*
+sed -i.bak 's|../src/perl5|../opt/beacon2-ri-tools/src/perl5|g' $PREFIX/lib/perl5/site_perl/BFF.pm
+sed -i.bak 's|../src/perl5|../opt/beacon2-ri-tools/src/perl5|g' $PREFIX/lib/perl5/site_perl/*.pl
+sed -i.bak 's|../src/perl5|../opt/beacon2-ri-tools/src/perl5|g' $PREFIX/lib/perl5/site_perl/bff-*
+sed -i.bak 's|../src/perl5|../opt/beacon2-ri-tools/src/perl5|g' $PREFIX/lib/perl5/site_perl/*.sh
+
+rm $PREFIX/lib/perl5/site_perl/BEACON/*.bak
+rm $PREFIX/lib/perl5/site_perl/*.bak
+
+BINARY_HOME=$PREFIX/bin
+
+cp -R beacon $BINARY_HOME/
+cp -R utils/pxf2bff/pxf2bff  $BINARY_HOME/
+cp -R utils/bff_validator/bff-validator  $BINARY_HOME/
+cp -R utils/models2xlsx/csv2xlsx $BINARY_HOME/
+cp -R BEACON/bin/*.pl $BINARY_HOME/
+chmod a+x $BINARY_HOME/beacon
+chmod a+x $BINARY_HOME/pxf2bff
+chmod a+x $BINARY_HOME/bff-validator
+chmod a+x $BINARY_HOME/csv2xlsx
+chmod a+x $BINARY_HOME/*.pl
+
+# export PATH=$PREFIX/bin:${PATH}
+
+
+sed -i.bak 's|../src/perl5|../opt/beacon2-ri-tools/src/perl5|g' $PREFIX/bin/*
+rm $PREFIX/bin/*.bak
+mkdir -p $PREFIX/opt/beacon2-ri-tools/
+cp -r * $PREFIX/opt/beacon2-ri-tools/
diff --git a/recipes/beacon2-ri-tools/meta.yaml b/recipes/beacon2-ri-tools/meta.yaml
new file mode 100644
index 0000000000000..9f0f2d1e90c9a
--- /dev/null
+++ b/recipes/beacon2-ri-tools/meta.yaml
@@ -0,0 +1,77 @@
+{% set name = "beacon2-ri-tools" %}
+{% set version = "2.0.0" %}
+{% set sha256 = "ef35e9a9c2f059c8c442000e6371e872559b7cfa2511216e21c213f56083bb7b" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/EGA-archive/beacon2-ri-tools/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  noarch: generic
+
+requirements:
+  host:
+    - perl =>5.32
+    - perl-app-cpanminus
+    - perl-text-unidecode
+    - perl-json-xs
+    - perl-path-tiny
+    - perl-file-which
+    - perl-yaml-libyaml
+    - json_schema_validator
+    - perl-list-moreutils
+    - perl-text-csv_xs
+    - perl-minion-backend-sqlite
+    - perl-data-structure-util
+    - perl-mojolicious
+    - perl-minion
+    - perl-data-dumper
+    - perl-autodie
+    - perl-excel-writer-xlsx
+    - perl-encode
+    - perl-date-calc
+    - perl-perldoc
+    - perl-perlio-gzip
+    - perl-json-validator
+  run:
+    - perl =>5.32
+    - perl-app-cpanminus
+    - perl-text-unidecode
+    - perl-json-xs
+    - perl-path-tiny
+    - perl-file-which
+    - perl-yaml-libyaml
+    - json_schema_validator
+    - perl-list-moreutils
+    - perl-text-csv_xs
+    - perl-minion-backend-sqlite
+    - perl-data-structure-util
+    - perl-mojolicious
+    - perl-minion
+    - perl-data-dumper
+    - perl-autodie
+    - perl-excel-writer-xlsx
+    - perl-encode
+    - perl-date-calc
+    - perl-perldoc
+    - perl-perlio-gzip
+    - perl-json-validator
+test:
+  # Perl 'use' tests 
+  commands:
+    - beacon -h
+
+about:
+  home: https://github.com/EGA-archive/beacon2-ri-tools/tree/main
+  license: GPL-3.0-only
+  summary: "Script to parse a VCF having SnepEff/SnpSift annotations"
+  description: "Beacon v2 Reference Implementation (Data ingestion tools)" 
+
+extra:
+  recipe-maintainers:
+    - khaled196
diff --git a/recipes/beagle-lib/build.sh b/recipes/beagle-lib/build.sh
index 72dee2058a8b3..423e673726b31 100644
--- a/recipes/beagle-lib/build.sh
+++ b/recipes/beagle-lib/build.sh
@@ -1,7 +1,14 @@
 #!/bin/bash
 
-export LDFLAGS="-L${PREFIX}/lib"
-mkdir build; cd build
-cmake -DCMAKE_INSTALL_PREFIX=${PREFIX} ..
-make
-make install
+export INCLUDES="-I{PREFIX}/include"
+export LIBPATH="-L${PREFIX}/lib"
+export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
+export CXXFLAGS="${CXXFLAGS} -O3"
+
+cmake -S . -B build/ \
+	-DCMAKE_BUILD_TYPE=Release \
+	-DCMAKE_INSTALL_PREFIX="${PREFIX}" \
+	-DCMAKE_CXX_COMPILER="${CXX}" \
+	-DCMAKE_CXX_FLAGS="${CXXFLAGS}"
+
+cmake --build build/ --target install -j ${CPU_COUNT}
diff --git a/recipes/beagle-lib/meta.yaml b/recipes/beagle-lib/meta.yaml
index f83c772208a1e..4d711fca88a13 100644
--- a/recipes/beagle-lib/meta.yaml
+++ b/recipes/beagle-lib/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "beagle-lib" %}
-{% set version = "4.0.0" %}
+{% set version = "4.0.1" %}
 
 package:
   name: {{ name }}
@@ -7,31 +7,38 @@ package:
 
 source:
   url: https://github.com/beagle-dev/{{ name }}/archive/v{{ version }}.tar.gz
-  sha256: d197eeb7fe5879dfbae789c459bcc901cb04d52c9cf5ef14fb07ff7a6b74560b
+  sha256: 9d258cd9bedd86d7c28b91587acd1132f4e01d4f095c657ad4dc93bd83d4f120
 
 build:
-  number: 2
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('beagle-lib', max_pin="x") }}
 
 requirements:
   build:
-    - make
     - {{ compiler('cxx') }}
+    - make
     - cmake
     - autoconf
     - automake
     - libtool
-    - openjdk
-  run:
-    - libtool
+    - pkg-config
+  host:
     - openjdk
 
 test:
   commands:
-    - test -f ${PREFIX}/lib/libhmsbeagle-jni.so # [linux]
-    - test -f ${PREFIX}/lib/libhmsbeagle-jni.jnilib # [osx]
+    - test -f ${PREFIX}/lib/libhmsbeagle-jni.so  # [linux]
+    - test -f ${PREFIX}/lib/libhmsbeagle-jni.jnilib  # [osx]
 
 about:
-  home: https://github.com/beagle-dev/beagle-lib
-  license: GPL-3.0+
-  license_family: GPL
-  summary: general purpose library for evaluating the likelihood of sequence evolution on trees
+  home: "https://github.com/beagle-dev/beagle-lib"
+  license: "GPL-3.0-or-later"
+  license_family: GPL3
+  license_file: LICENSE
+  summary: "A general purpose library for evaluating the likelihood of sequence evolution on phylogenetic trees."
+  dev_url: "https://github.com/beagle-dev/beagle-lib"
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/beagle/build.sh b/recipes/beagle/build.sh
index b00f833c0de68..4cbcdc46d056b 100644
--- a/recipes/beagle/build.sh
+++ b/recipes/beagle/build.sh
@@ -8,7 +8,7 @@ outdir=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
 mkdir -p $outdir
 mkdir -p $PREFIX/bin
 
-cp beagle.21Apr21.304.jar $outdir/beagle.jar
+cp beagle.22Jul22.46e.jar $outdir/beagle.jar
 cp $RECIPE_DIR/beagle $outdir/
 
 chmod +x $outdir/beagle
diff --git a/recipes/beagle/gpl_license b/recipes/beagle/gpl_license
new file mode 100644
index 0000000000000..818433ecc0e09
--- /dev/null
+++ b/recipes/beagle/gpl_license
@@ -0,0 +1,674 @@
+                    GNU GENERAL PUBLIC LICENSE
+                       Version 3, 29 June 2007
+
+ Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+                            Preamble
+
+  The GNU General Public License is a free, copyleft license for
+software and other kinds of works.
+
+  The licenses for most software and other practical works are designed
+to take away your freedom to share and change the works.  By contrast,
+the GNU General Public License is intended to guarantee your freedom to
+share and change all versions of a program--to make sure it remains free
+software for all its users.  We, the Free Software Foundation, use the
+GNU General Public License for most of our software; it applies also to
+any other work released this way by its authors.  You can apply it to
+your programs, too.
+
+  When we speak of free software, we are referring to freedom, not
+price.  Our General Public Licenses are designed to make sure that you
+have the freedom to distribute copies of free software (and charge for
+them if you wish), that you receive source code or can get it if you
+want it, that you can change the software or use pieces of it in new
+free programs, and that you know you can do these things.
+
+  To protect your rights, we need to prevent others from denying you
+these rights or asking you to surrender the rights.  Therefore, you have
+certain responsibilities if you distribute copies of the software, or if
+you modify it: responsibilities to respect the freedom of others.
+
+  For example, if you distribute copies of such a program, whether
+gratis or for a fee, you must pass on to the recipients the same
+freedoms that you received.  You must make sure that they, too, receive
+or can get the source code.  And you must show them these terms so they
+know their rights.
+
+  Developers that use the GNU GPL protect your rights with two steps:
+(1) assert copyright on the software, and (2) offer you this License
+giving you legal permission to copy, distribute and/or modify it.
+
+  For the developers' and authors' protection, the GPL clearly explains
+that there is no warranty for this free software.  For both users' and
+authors' sake, the GPL requires that modified versions be marked as
+changed, so that their problems will not be attributed erroneously to
+authors of previous versions.
+
+  Some devices are designed to deny users access to install or run
+modified versions of the software inside them, although the manufacturer
+can do so.  This is fundamentally incompatible with the aim of
+protecting users' freedom to change the software.  The systematic
+pattern of such abuse occurs in the area of products for individuals to
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+have designed this version of the GPL to prohibit the practice for those
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+
+  Finally, every program is threatened constantly by software patents.
+States should not allow patents to restrict development and use of
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+make it effectively proprietary.  To prevent this, the GPL assures that
+patents cannot be used to render the program non-free.
+
+  The precise terms and conditions for copying, distribution and
+modification follow.
+
+                       TERMS AND CONDITIONS
+
+  0. Definitions.
+
+  "This License" refers to version 3 of the GNU General Public License.
+
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+works, such as semiconductor masks.
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+  You may convey verbatim copies of the Program's source code as you
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+
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+
+  12. No Surrender of Others' Freedom.
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+
+  17. Interpretation of Sections 15 and 16.
+
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+above cannot be given local legal effect according to their terms,
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+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
+                     END OF TERMS AND CONDITIONS
+
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+
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+    Copyright (C) <year>  <name of author>
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+    it under the terms of the GNU General Public License as published by
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+    (at your option) any later version.
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+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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+    You should have received a copy of the GNU General Public License
+    along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+Also add information on how to contact you by electronic and paper mail.
+
+  If the program does terminal interaction, make it output a short
+notice like this when it starts in an interactive mode:
+
+    <program>  Copyright (C) <year>  <name of author>
+    This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+    This is free software, and you are welcome to redistribute it
+    under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License.  Of course, your program's commands
+might be different; for a GUI interface, you would use an "about box".
+
+  You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+<http://www.gnu.org/licenses/>.
+
+  The GNU General Public License does not permit incorporating your program
+into proprietary programs.  If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library.  If this is what you want to do, use the GNU Lesser General
+Public License instead of this License.  But first, please read
+<http://www.gnu.org/philosophy/why-not-lgpl.html>.
diff --git a/recipes/beagle/meta.yaml b/recipes/beagle/meta.yaml
index 67c620e4f24cf..4a7757df61383 100644
--- a/recipes/beagle/meta.yaml
+++ b/recipes/beagle/meta.yaml
@@ -1,19 +1,21 @@
 {% set name = "beagle" %}
-{% set version = "5.2_21Apr21.304" %}
-{% set sha256 = "cf420d5766728d9110895651c1784b18888e24fddc4d882889390d33028d22e2" %}
+{% set version = "5.4_22Jul22.46e" %}
+{% set sha256 = "57226e441f4da7104df139d022ed24ad9804fa72cf754e45d04f5658dcef242b" %}
 
 package:
   name: {{ name }}
   version: {{ version }}
 
 source:
-  url: http://faculty.washington.edu/browning/beagle/beagle.21Apr21.304.jar
+  url: https://faculty.washington.edu/browning/beagle/beagle.22Jul22.46e.jar
   sha256: {{ sha256 }}
 
 build:
   detect_binary_files_with_prefix: True
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('beagle', max_pin="x") }}
 
 requirements:
   run:
@@ -25,10 +27,11 @@ test:
 
 about:
   home: http://faculty.washington.edu/browning/beagle/beagle.html
-  license: GPLv3
-  license_family: GPL
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: gpl_license
   summary: "Beagle is a software package for phasing genotypes and for imputing ungenotyped markers."
-  doc_url: http://faculty.washington.edu/browning/beagle/beagle_5.1_12Aug19.pdf
+  doc_url: https://faculty.washington.edu/browning/beagle/beagle_5.4_18Mar22.pdf
 
 extra:
   identifiers:
diff --git a/recipes/beav/build.sh b/recipes/beav/build.sh
index a334625f12bba..c42a98bd2634d 100755
--- a/recipes/beav/build.sh
+++ b/recipes/beav/build.sh
@@ -16,12 +16,16 @@ mv databases/* $BEAV_DIR/databases
 mv models/* $BEAV_DIR/models
 mv test_data/* $BEAV_DIR/test_data
 
-git clone https://github.com/weisberglab/DBSCAN-SWA $BEAV_DIR/software/DBSCAN-SWA
-
-git clone https://github.com/weisberglab/PaperBLAST $BEAV_DIR/software/PaperBLAST
+mv DBSCAN-SWA $BEAV_DIR/software/
+mv PyCirclize $BEAV_DIR/software/
+mv PaperBLAST $BEAV_DIR/software/
 mkdir $BEAV_DIR/software/PaperBLAST/bin/blast
 
+chmod +x $BEAV_DIR/scripts/*
+
 #TIGER
+#TIGER must be downloaded in the build script because the official release contains linux binaries and a broken softlink.
+#Downloading in the meta.yaml script breaks the build and so it must be downloaded here with the exclude parameters.
 curl -v -L -O https://github.com/sandialabs/TIGER/archive/refs/tags/TIGER2.1.tar.gz
 tar xzf TIGER2.1.tar.gz --exclude 'TIGER-TIGER2.1/db/Pfam-A.hmm' --exclude 'TIGER-TIGER2.1/bin/aragorn*' --exclude 'TIGER-TIGER2.1/bin/hmmsearch' --exclude 'TIGER-TIGER2.1/bin/pfscan'
 patch -p 0 -d ./ < $BEAV_DIR/scripts/tiger.patch
diff --git a/recipes/beav/meta.yaml b/recipes/beav/meta.yaml
index 1bb5df6215aba..61b78a68727b4 100644
--- a/recipes/beav/meta.yaml
+++ b/recipes/beav/meta.yaml
@@ -1,18 +1,35 @@
 {% set name = "beav" %}
-{% set version = "0.4.5" %}
-{% set sha256 = "dfb8b6fcd99834c631a509ba6214dda2f21d828e932d9d64dc7f1444b7e699f0" %}
+{% set version = "1.1.0" %}
+{% set sha256 = "f9a65ac152b33c8649b51e152cc7137036140f5e2d7460f162ebd180aac3f868" %}
+{% set dbscan_git = "condabeav0.5" %}
+{% set dbscan_sha256 = "2fe08873026fe63a9992bfb997e59fecce7facb903778983dc6917c962573463" %}
+{% set gapmind_git = "Beav0.5.1conda" %}
+{% set gapmind_sha256 = "a5d0c4855d65355fa4675172a65b97cb03d4ec2e5098a08bece84f677e48a244" %}
+{% set pycirclize_git = "v0.5.3_beav0.5.5" %}
+{% set pycirclize_sha256 = "f2b40d9de0d7d37d376e7d159b0b487933b40891c5e07094d555fd1a0d4d70b0" %}
 
 package:
   name: {{ name }}
   version: {{ version }}
 
 source:
-  url: https://github.com/weisberglab/{{ name }}/archive/v{{ version }}.tar.gz
-  sha256: {{ sha256 }}
+  - url: https://github.com/weisberglab/{{ name }}/archive/v{{ version }}.tar.gz
+    sha256: {{ sha256 }}
+  - url: https://github.com/weisberglab/DBSCAN-SWA/archive/refs/tags/{{ dbscan_git }}.tar.gz
+    folder: DBSCAN-SWA
+    sha256: {{ dbscan_sha256 }}
+  - url: https://github.com/weisberglab/PaperBLAST_Beav/archive/refs/tags/{{ gapmind_git }}.tar.gz
+    folder: PaperBLAST
+    sha256: {{ gapmind_sha256 }}
+  - url: https://github.com/acarafat/pyCirclize/archive/refs/tags/{{ pycirclize_git }}.tar.gz
+    folder: PyCirclize
+    sha256: {{pycirclize_sha256}}
 
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage("beav", max_pin='x.x') }}
 
 requirements:
   run:
@@ -20,7 +37,7 @@ requirements:
     - perl >=5.22.0
     - hmmer >=3.3.2
     - bakta >=1.6
-    - integron_finder >=2.0.1
+    - integron_finder =2.0.2
     - macsyfinder
     - defense-finder
     - fastani
diff --git a/recipes/bed2gff/build.sh b/recipes/bed2gff/build.sh
new file mode 100644
index 0000000000000..8e10cdc3e3237
--- /dev/null
+++ b/recipes/bed2gff/build.sh
@@ -0,0 +1,9 @@
+#!/bin/bash
+
+# Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
+# We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
+export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="${BUILD_PREFIX}/.cargo"
+
+# build statically linked binary with Rust
+RUST_BACKTRACE=1
+cargo install --verbose --path . --root ${PREFIX}
diff --git a/recipes/bed2gff/meta.yaml b/recipes/bed2gff/meta.yaml
new file mode 100644
index 0000000000000..43a1e954c68bf
--- /dev/null
+++ b/recipes/bed2gff/meta.yaml
@@ -0,0 +1,37 @@
+{% set name = "bed2gff" %}
+{% set version = "0.1.5" %}
+
+package:
+  name: bed2gff
+  version: {{ version }}
+
+source:
+  url: https://github.com/alejandrogzi/{{ name }}/archive/refs/tags/v.{{ version }}.tar.gz
+  sha256: 250333a3388a90d0a2f5a927eef220def95f7556e0c7d2344f0f7a37b3efa327
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('bed2gff', max_pin="x.x") }}
+
+requirements:
+  build:
+    - {{ compiler("cxx") }}
+    - rust >=1.39
+    - pkg-config
+
+test:
+  commands:
+    - bed2gff --help
+    - bed2gff --version
+
+about:
+  home: https://github.com/alejandrogzi/bed2gff
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "BED-to-GFF3 converter that runs in parallel"
+
+extra:
+  recipe-maintainers:
+    - alejandrogzi
diff --git a/recipes/bed2gtf/build.sh b/recipes/bed2gtf/build.sh
new file mode 100644
index 0000000000000..8e10cdc3e3237
--- /dev/null
+++ b/recipes/bed2gtf/build.sh
@@ -0,0 +1,9 @@
+#!/bin/bash
+
+# Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
+# We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
+export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="${BUILD_PREFIX}/.cargo"
+
+# build statically linked binary with Rust
+RUST_BACKTRACE=1
+cargo install --verbose --path . --root ${PREFIX}
diff --git a/recipes/bed2gtf/meta.yaml b/recipes/bed2gtf/meta.yaml
new file mode 100644
index 0000000000000..8647a4c928c8c
--- /dev/null
+++ b/recipes/bed2gtf/meta.yaml
@@ -0,0 +1,37 @@
+{% set name = "bed2gtf" %}
+{% set version = "1.9.2" %}
+
+package:
+ name: {{ name }}
+ version: {{ version }}
+
+source:
+ url: https://github.com/alejandrogzi/{{ name }}/archive/refs/tags/v.{{ version }}.tar.gz
+ sha256: 38bd7528a5a643a4ade316838af36085809bf6476d1b8f37f126d7678fb7e15f
+
+build:
+ number: 0
+ run_exports:
+    - {{ pin_subpackage('bed2gtf', max_pin="x.x") }}
+
+requirements:
+  build:
+    - {{ compiler("cxx") }}
+    - rust >=1.39
+    - pkg-config
+
+test:
+ commands:
+   - bed2gtf --help
+   - bed2gtf --version
+
+about:
+ home: https://github.com/alejandrogzi/bed2gtf
+ license: MIT
+ license_family: MIT
+ license_file: LICENSE
+ summary: "A high-performance BED-to-GTF converter written in Rust"
+
+extra:
+  recipe-maintainers:
+    - alejandrogzi
diff --git a/recipes/bedgovcf/build.sh b/recipes/bedgovcf/build.sh
new file mode 100644
index 0000000000000..c5c869f01eb7d
--- /dev/null
+++ b/recipes/bedgovcf/build.sh
@@ -0,0 +1,4 @@
+#!/bin/bash
+chmod a+x bedgovcf*
+mkdir -p $PREFIX/bin
+cp bedgovcf* $PREFIX/bin/bedgovcf
\ No newline at end of file
diff --git a/recipes/bedgovcf/meta.yaml b/recipes/bedgovcf/meta.yaml
new file mode 100644
index 0000000000000..8a9350345822a
--- /dev/null
+++ b/recipes/bedgovcf/meta.yaml
@@ -0,0 +1,36 @@
+{% set version = '0.1.1' %}
+{% set name = 'bedgovcf' %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  - url: https://github.com/nvnieuwk/bedgovcf/releases/download/{{ version }}/bedgovcf-{{ version }}-darwin-amd64.tar.gz # [osx-amd64]
+    md5: 1b4658701449985e20551b8c46dd162c # [osx]
+  - url: https://github.com/nvnieuwk/bedgovcf/releases/download/{{ version }}/bedgovcf-{{ version }}-linux-amd64.tar.gz # [linux]
+    md5: 3229227b913a2819e998458335bf491f # [linux]
+
+build:
+  number: 1
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  run:
+    - tabix
+
+test:
+  commands:
+    - "{{ name }} --help"
+    - bgzip -h
+
+extra:
+  skip-lints:
+    - should_be_noarch_generic  # uses per platform binaries
+    - should_not_be_noarch_source  # uses binaries
+
+about:
+  home: https://github.com/nvnieuwk/bedgovcf
+  license: MIT
+  summary: A simple tool to convert BED files to VCF files
diff --git a/recipes/bedops/meta.yaml b/recipes/bedops/meta.yaml
index d6e6046f96376..8224cdd389f9a 100644
--- a/recipes/bedops/meta.yaml
+++ b/recipes/bedops/meta.yaml
@@ -5,7 +5,9 @@ package:
   version: {{ version }}
 
 build:
-  number: 1
+  number: 2
+  run_exports:
+    - {{ pin_subpackage("bedops", max_pin="x.x.x") }}  
 
 source:
   url: https://github.com/bedops/bedops/archive/v{{ version }}.tar.gz
@@ -33,3 +35,5 @@ extra:
   identifiers:
     - biotools:Bedops
     - doi:10.1093/bioinformatics/bts277
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/bedtk/meta.yaml b/recipes/bedtk/meta.yaml
index cb51dc445d8c3..13e1ffd1868b4 100644
--- a/recipes/bedtk/meta.yaml
+++ b/recipes/bedtk/meta.yaml
@@ -14,7 +14,9 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 4
+  number: 5
+  run_exports:
+    - {{ pin_subpackage("bedtk", max_pin="x.x.x") }}  
 
 requirements:
   build:
@@ -48,3 +50,5 @@ about:
 extra:
   identifiers:
     - biotools:bedtk
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/bedtools/meta.yaml b/recipes/bedtools/meta.yaml
index 3551f89a3771a..d7c60edc863cc 100644
--- a/recipes/bedtools/meta.yaml
+++ b/recipes/bedtools/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "bedtools" %}
-{% set version = "2.31.0" %}
+{% set version = "2.31.1" %}
 
 package:
   name: {{ name }}
@@ -7,10 +7,13 @@ package:
 
 source:
   url: https://github.com/arq5x/bedtools2/releases/download/v{{ version }}/bedtools-{{ version }}.tar.gz
-  sha256: 8462980301da669b2976ef821a5cfd902c6653a5f7ed348a243a978ecf4593e1
+  sha256: fc7e660c2279b1e008b80aca0165a4a157daf4994d08a533ee925d73ce732b97
 
 build:
-  number: 2
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('bedtools', max_pin="x") }}
+
 
 requirements:
   build:
@@ -32,6 +35,9 @@ about:
   summary: A powerful toolset for genome arithmetic
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:bedtools
     - usegalaxy-eu:bedtools_intersectbed
+    - debian:bedtools
diff --git a/recipes/bellmans-gapc/meta.yaml b/recipes/bellmans-gapc/meta.yaml
index f929e5c91ba7e..aeeba10b347fc 100644
--- a/recipes/bellmans-gapc/meta.yaml
+++ b/recipes/bellmans-gapc/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "2023.07.05" %}
+{% set version = "2024.01.12" %}
 
 package:
   name: bellmans-gapc
@@ -6,10 +6,12 @@ package:
 
 source:
   url: https://github.com/jlab/gapc/archive/{{ version }}.tar.gz
-  sha256: 05ebe0707c767dc80f0f9a67d5387a098bcf6bf2e26408c5f2059f373410df69
+  sha256: 590b62d5fc39b1deb45855b0586d7ca3674ef17c59fc84ef445d2760a480f7ba
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage('bellmans-gapc', max_pin=None) }}
 
 requirements:
   build:
@@ -38,6 +40,7 @@ test:
 
 about:
   home: https://bibiserv.cebitec.uni-bielefeld.de/gapc
-  license: 'GPLv3+'
+  license: 'GPL-3.0-or-later'
+  license_family: GPL3
   license_file: LICENSE
   summary: 'A language and compiler for algebraic dynamic programming.'
diff --git a/recipes/bfc/meta.yaml b/recipes/bfc/meta.yaml
index 36d92acead4e4..48efced8289a0 100644
--- a/recipes/bfc/meta.yaml
+++ b/recipes/bfc/meta.yaml
@@ -3,7 +3,9 @@ package:
   version: "r181"
 
 build:
-  number: 9
+  number: 10
+  run_exports:
+    - {{ pin_subpackage("bfc", max_pin="x.x.x") }}  
 
 source:
   url: https://github.com/lh3/bfc/archive/a73dad248dc56d9d4d22eacbbbc51ac276045168.tar.gz
@@ -29,3 +31,7 @@ about:
   license: MIT
   license_file: LICENSE.txt
   summary: BFC is a standalone high-performance tool for correcting sequencing errors from Illumina sequencing data.
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/bgreat/meta.yaml b/recipes/bgreat/meta.yaml
index 8962130ba8d8f..586688e1e95e1 100644
--- a/recipes/bgreat/meta.yaml
+++ b/recipes/bgreat/meta.yaml
@@ -10,7 +10,9 @@ source:
   sha256: bc60e755a3205b725834f37d7509062879415f03730b424cbac06b776eb977cc
 
 build:
-  number: 6
+  number: 7
+  run_exports:
+    - {{ pin_subpackage("bgreat", max_pin="x.x.x") }}  
   skip: true # [osx]
 
 requirements:
@@ -29,3 +31,7 @@ about:
   home: https://github.com/Malfoy/BGREAT2
   license: AGPL-3.0
   summary: BGREAT2 is a read mapping tool for NGS sequencing data that align reads on a de Bruijn graph. Preliminary version described at https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1103-9 and used in Bcool a short read corrector (https://arxiv.org/abs/1711.03336)
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/bifrost/meta.yaml b/recipes/bifrost/meta.yaml
index 86e8668780e78..8ee624077f1c1 100644
--- a/recipes/bifrost/meta.yaml
+++ b/recipes/bifrost/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "bifrost" %}
-{% set version = "1.2.1" %}
+{% set version = "1.3.5" %}
 
 package:
   name: {{ name|lower }}
@@ -7,10 +7,13 @@ package:
 
 source:
   url: https://github.com/pmelsted/{{ name|lower }}/archive/v{{ version }}.tar.gz
-  sha256: fe93080ef3ea71ff009fc206b5c17dd40fbfd18293000621a83d7d947dfedf1a
+  sha256: e1b2491328b0cc1a32e433a8a9780f05547fa4b8d674b58abdda9ac8809f5341
 
 build:
   number: 0
+  # v1.3.0 breaks Bifrost Index File (.bfi) compatibility with previous Bifrost versions
+  run_exports:
+    - {{ pin_subpackage('bifrost', max_pin="x.x") }}
 
 requirements:
   build:
@@ -39,3 +42,4 @@ about:
 extra:
    identifiers:
      - doi:10.1101/695338
+     - biotools:bifrost
diff --git a/recipes/bigscape/meta.yaml b/recipes/bigscape/meta.yaml
index cb0f0d73a88c7..0809408af242a 100644
--- a/recipes/bigscape/meta.yaml
+++ b/recipes/bigscape/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "1.1.5" %}
-{% set sha256 = "ec7cebbec8f83f4187c80e02ecbb37411a1898a2b83bb80088810f1600528ec7" %} 
+{% set version = "1.1.9" %}
+{% set sha256 = "ef0ddb5b433e0b1467ae5f96037fd6d23ebcba6bc08201d1421eba35d072e534" %}
 
 package:
   name: bigscape
@@ -12,24 +12,37 @@ source:
 build:
   number: 0
   noarch: python
-  script: "{{ PYTHON }} -m pip install --no-deps --ignore-installed . -vv"
+  script: "{{ PYTHON }} -m pip install --no-deps --no-build-isolation . -vvv"
+  entry_points:
+    - bigscape=bigscape.__main__:main
+  run_exports:
+    - {{ pin_subpackage('bigscape', max_pin="x") }}
 
 requirements:
   host:
     - python ==3.7
+    - pip
   run:
     - python ==3.7
     - hmmer
     - biopython
     - fasttree
     - networkx
-    - scikit-learn ==0.19.2
+    - numpy
+    - scikit-learn
+    - scipy
 
 test:
   commands:
-    - 'bigscape.py --version'
+    - 'bigscape --version'
 
 about:
   home: https://github.com/medema-group/BiG-SCAPE
-  license: GNU Affero v3
+  license: AGPL-3.0-or-later
+  license_file: LICENSE
   summary: Biosynthetic Genes Similarity Clustering and Prospecting Engine.
+  doc_url: https://github.com/medema-group/BiG-SCAPE/wiki
+
+extra:
+  identifiers:
+    - doi:10.1038/s41589-019-0400-9
diff --git a/recipes/bigtools/build.sh b/recipes/bigtools/build.sh
new file mode 100644
index 0000000000000..28fb429c3bd0c
--- /dev/null
+++ b/recipes/bigtools/build.sh
@@ -0,0 +1,7 @@
+#!/bin/bash
+set -ex
+
+export RUST_BACKTRACE=full
+
+cargo install --verbose --path ./bigtools --root $PREFIX --locked
+
diff --git a/recipes/bigtools/meta.yaml b/recipes/bigtools/meta.yaml
new file mode 100644
index 0000000000000..4544a87e1ee32
--- /dev/null
+++ b/recipes/bigtools/meta.yaml
@@ -0,0 +1,36 @@
+{% set version = "0.4.3" %}
+
+package:
+  name: bigtools
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('bigtools', max_pin="x.x") }}
+
+source:
+  url: https://github.com/jackh726/bigtools/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: "cb9a11e4efe10b103f65c24bba19980ba3df1e57c9bbff8aac34d74fa3a45e8a"
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('rust') }}
+
+test:
+  commands:
+    - bigtools --help | grep Usage
+
+about:
+  home: "https://github.com/jackh726/bigtools"
+  license: MIT
+  doc_url: "https://docs.rs/bigtools/latest/bigtools"
+  summary: 'Bigtools provides a high-level, performant API for reading and writing bigWig and bigBed files.'
+  license_family: MIT
+  license_file: LICENSE
+  dev_url: "https://github.com/jackh726/bigtools"
+
+extra:
+  identifiers:
+    - doi:10.5281/zenodo.10606493
diff --git a/recipes/binchicken/meta.yaml b/recipes/binchicken/meta.yaml
new file mode 100644
index 0000000000000..7d3a3dc62433d
--- /dev/null
+++ b/recipes/binchicken/meta.yaml
@@ -0,0 +1,47 @@
+{% set version = "0.10.5" %}
+{% set name = "binchicken" %}
+{% set sha256 = "687430f21caba05f654c6ebd26147c9130265de4cfc49d5233d0bcf9fcb07162" %}
+
+package:
+  name: binchicken
+  version: {{ version }}
+
+build:
+  number: 0
+  noarch: python
+  script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage('binchicken', max_pin="x") }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+requirements:
+  host:
+    - python >=3.8
+    - pip
+  run:
+    - python =3.10.*
+    - snakemake =7.32.*
+    - mamba =1.4.*
+    - networkx =3.1
+    - bird_tool_utils_python =0.4.*
+    - extern =0.4.*
+    - ruamel.yaml =0.17.*
+    - polars =0.20.*
+    - pigz =2.3.*
+    - pyarrow =12.0.*
+    - parallel =20230522
+    - pyopenssl >22.1.0
+
+test:
+  commands:
+    - {{ name }} --version | grep '{{ version }}'
+
+about:
+  home: https://github.com/aroneys/binchicken
+  license: GNU General Public v3 (GPLv3)
+  license_family: GPL3
+  license_file: LICENSE
+  summary: Targeted recovery of low abundance metagenome assembled genomes through intelligent coassembly
diff --git a/recipes/bindash/build.sh b/recipes/bindash/build.sh
index 82b50c2465b8b..83f5dedf13ec7 100644
--- a/recipes/bindash/build.sh
+++ b/recipes/bindash/build.sh
@@ -1,8 +1,7 @@
 #!/bin/bash
 mkdir release && pushd release
 cmake -DCMAKE_BUILD_TYPE=Release ..
-make VERBOSE=1
+make VERBOSE=1 -j ${CPU_COUNT}
 install -d $PREFIX/bin
 install bindash $PREFIX/bin
 popd
-
diff --git a/recipes/bindash/build_failure.linux-64.yaml b/recipes/bindash/build_failure.linux-64.yaml
deleted file mode 100644
index 5c45b9976d04e..0000000000000
--- a/recipes/bindash/build_failure.linux-64.yaml
+++ /dev/null
@@ -1,104 +0,0 @@
-recipe_sha: bf400c5d79ff20f338f3a29d4eb02d4a42e02d5f4200e3a4c8fa6d6a9ebb8710  # The commit at which this recipe failed to build.
-skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
-log: |-
-  Diff algorithm options
-      --minimal             produce the smallest possible diff
-      -w, --ignore-all-space
-                            ignore whitespace when comparing lines
-      -b, --ignore-space-change
-                            ignore changes in amount of whitespace
-      --ignore-space-at-eol
-                            ignore changes in whitespace at EOL
-      --ignore-cr-at-eol    ignore carrier-return at the end of line
-      --ignore-blank-lines  ignore changes whose lines are all blank
-      -I, --ignore-matching-lines <regex>
-                            ignore changes whose all lines match <regex>
-      --indent-heuristic    heuristic to shift diff hunk boundaries for easy reading
-      --patience            generate diff using the "patience diff" algorithm
-      --histogram           generate diff using the "histogram diff" algorithm
-      --diff-algorithm <algorithm>
-                            choose a diff algorithm
-      --anchored <text>     generate diff using the "anchored diff" algorithm
-      --word-diff[=<mode>]  show word diff, using <mode> to delimit changed words
-      --word-diff-regex <regex>
-                            use <regex> to decide what a word is
-      --color-words[=<regex>]
-                            equivalent to --word-diff=color --word-diff-regex=<regex>
-      --color-moved[=<mode>]
-                            moved lines of code are colored differently
-      --color-moved-ws <mode>
-                            how white spaces are ignored in --color-moved
-
-  Other diff options
-      --relative[=<prefix>]
-                            when run from subdir, exclude changes outside and show relative paths
-      -a, --text            treat all files as text
-      -R                    swap two inputs, reverse the diff
-      --exit-code           exit with 1 if there were differences, 0 otherwise
-      --quiet               disable all output of the program
-      --ext-diff            allow an external diff helper to be executed
-      --textconv            run external text conversion filters when comparing binary files
-      --ignore-submodules[=<when>]
-                            ignore changes to submodules in the diff generation
-      --submodule[=<format>]
-                            specify how differences in submodules are shown
-      --ita-invisible-in-index
-                            hide 'git add -N' entries from the index
-      --ita-visible-in-index
-                            treat 'git add -N' entries as real in the index
-      -S <string>           look for differences that change the number of occurrences of the specified string
-      -G <regex>            look for differences that change the number of occurrences of the specified regex
-      --pickaxe-all         show all changes in the changeset with -S or -G
-      --pickaxe-regex       treat <string> in -S as extended POSIX regular expression
-      -O <file>             control the order in which files appear in the output
-      --rotate-to <path>    show the change in the specified path first
-      --skip-to <path>      skip the output to the specified path
-      --find-object <object-id>
-                            look for differences that change the number of occurrences of the specified object
-      --diff-filter [(A|C|D|M|R|T|U|X|B)...[*]]
-                            select files by diff type
-      --output <file>       output to a specific file
-
-  -- Configuring done (0.5s)
-  -- Generating done (0.0s)
-  -- Build files have been written to: $SRC_DIR/release
-  $BUILD_PREFIX/bin/cmake -S$SRC_DIR -B$SRC_DIR/release --check-build-system CMakeFiles/Makefile.cmake 0
-  $BUILD_PREFIX/bin/cmake -E cmake_progress_start $SRC_DIR/release/CMakeFiles $SRC_DIR/release//CMakeFiles/progress.marks
-  make  -f CMakeFiles/Makefile2 all
-  make[1]: Entering directory '$SRC_DIR/release'
-  make  -f CMakeFiles/bindash.dir/build.make CMakeFiles/bindash.dir/depend
-  make[2]: Entering directory '$SRC_DIR/release'
-  cd $SRC_DIR/release && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR $SRC_DIR/release $SRC_DIR/release $SRC_DIR/release/CMakeFiles/bindash.dir/DependInfo.cmake --color=
-  make[2]: Leaving directory '$SRC_DIR/release'
-  make  -f CMakeFiles/bindash.dir/build.make CMakeFiles/bindash.dir/build
-  make[2]: Entering directory '$SRC_DIR/release'
-  [ 50%] Building CXX object CMakeFiles/bindash.dir/src/bindash.cpp.o
-  $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c -DGIT_COMMIT_HASH="" -DGIT_DIFF_SHORTSTAT=""  -fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bindash-1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -std=c11 -Wall -O3 -DNDEBUG -Ofast -fopenmp -MD -MT CMakeFiles/bindash.dir/src/bindash.cpp.o -MF CMakeFiles/bindash.dir/src/bindash.cpp.o.d -o CMakeFiles/bindash.dir/src/bindash.cpp.o -c $SRC_DIR/src/bindash.cpp
-  /opt/conda/conda-bld/bindash_1685382869725/work/src/bindash.cpp: In function 'void cmddist(bool, bool, const std::vector<Entity>&, const std::vector<Entity>&, const Sketchargs&, const Distargs&)':
-  /opt/conda/conda-bld/bindash_1685382869725/work/src/bindash.cpp:361:63: error: aggregate 'std::array<std::priority_queue<std::tuple<double, double, long unsigned int, long unsigned int, long unsigned int, long unsigned int> >, 2048> tophits_arr' has incomplete type and cannot be defined
-    361 |                 std::array<std::priority_queue<hit_t>, ISIZE> tophits_arr;
-        |                                                               ^~~~~~~~~~~
-  make[2]: *** [CMakeFiles/bindash.dir/build.make:76: CMakeFiles/bindash.dir/src/bindash.cpp.o] Error 1
-  make[2]: Leaving directory '$SRC_DIR/release'
-  make[1]: *** [CMakeFiles/Makefile2:83: CMakeFiles/bindash.dir/all] Error 2
-  make: *** [Makefile:91: all] Error 2
-  make[1]: Leaving directory '$SRC_DIR/release'
-  Traceback (most recent call last):
-    File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
-      sys.exit(main())
-    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
-      call_conda_build(action, config)
-    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
-      result = api.build(
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
-      return build_tree(
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
-      packages_from_this = build(metadata, stats,
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
-      utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
-      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
-      raise subprocess.CalledProcessError(proc.returncode, _args)
-  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/bindash_1685382869725/work/conda_build.sh']' returned non-zero exit status 2.
-# Last 100 lines of the build log.
diff --git a/recipes/bindash/meta.yaml b/recipes/bindash/meta.yaml
index deac0b5e9f345..1b5105f60619d 100644
--- a/recipes/bindash/meta.yaml
+++ b/recipes/bindash/meta.yaml
@@ -1,30 +1,32 @@
 {% set name = "bindash" %}
-{% set version = "1.0" %}
+{% set version = "2.3" %}
 
 package:
-  name: {{ name|lower }}
+  name: {{ name }}
   version: {{ version }}
 
 source:
-  url: https://github.com/zhaoxiaofei/{{ name|lower }}/archive/v{{ version }}.tar.gz
-  sha256: 6f7c68fec2ad5e2d869fbe52c324010de2ed61c3a5d5800cf6ab8f9c5deaaa1a
+  url: https://github.com/jianshu93/bindash/archive/v{{ version }}.tar.gz
+  sha256: 6e4bf36fd04195ed0738ea8bf835eca1e400b5ce6eef3902bdf0673955d15166
 
 build:
   skip: True  # [osx]
-  number: 4
+  number: 2
+  run_exports:
+      - {{ pin_subpackage('bindash', max_pin="x") }}
 
 requirements:
   build:
     - make
-    - {{ compiler('c') }}
     - {{ compiler('cxx') }}
     - cmake
-    - llvm-openmp  # [osx]
   host:
     - zlib
+    - libgomp  # [linux]
     - llvm-openmp  # [osx]
   run:
     - zlib
+    - libgomp  # [linux]
     - llvm-openmp  # [osx]
 
 test:
@@ -32,12 +34,19 @@ test:
     - bindash --help 2>&1 | grep sketch
 
 about:
-   home: https://github.com/zhaoxiaofei/bindash
-   license: Apache-2.0
-   license_family: APACHE
-   license_file: LICENSE
-   summary: Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop
+  home: https://github.com/zhaoxiaofei/bindash
+  license: Apache-2.0
+  license_family: APACHE
+  license_file: LICENSE
+  summary: "Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop."
+  dev_url: https://github.com/zhaoxiaofei/bindash
 
 extra:
-   identifiers:
-     - doi:10.1371/journal.pgen.1007758
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - doi:10.1093/bioinformatics/bty651
+    - doi:10.1101/2024.03.13.584875
+  recipe-maintainers:
+    - jianshu93
+    - zhaoxiaofei
diff --git a/recipes/binette/meta.yaml b/recipes/binette/meta.yaml
new file mode 100644
index 0000000000000..f666ea8f6e0f9
--- /dev/null
+++ b/recipes/binette/meta.yaml
@@ -0,0 +1,50 @@
+{% set name = "Binette" %}
+{% set version = "1.0.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+source:
+  url: https://github.com/genotoul-bioinfo/{{ name|lower }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 121cff275fac2bbec2062863fa074c7f4f2a16eb52cada89bc46c87b7429d63d
+
+build:
+  noarch: python
+  number: 0
+  script: {{ PYTHON }} -m pip install --no-deps --ignore-installed -vv .
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x") }}
+
+
+requirements:
+  host:
+    - python
+    - pip
+    - setuptools
+
+  run:
+    - python >=3.7
+    - numpy =1.19.2
+    - diamond =2.0.4
+    - pandas =1.4.0
+    - checkm2
+    - requests
+    - packaging
+    - tqdm
+    - networkx >=3
+    - pyfastx
+    - pyrodigal >=2
+
+test:
+  imports:
+    - binette
+  commands:
+    - binette -h
+
+about:
+  home: https://github.com/genotoul-bioinfo/{{ name|lower }}
+  doc_url: https://binette.readthedocs.io
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools."
diff --git a/recipes/binny/meta.yaml b/recipes/binny/meta.yaml
new file mode 100644
index 0000000000000..1b0b0808395aa
--- /dev/null
+++ b/recipes/binny/meta.yaml
@@ -0,0 +1,53 @@
+{% set name = "binny" %}
+{% set version = "2.2.18" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://github.com/ohickl/{{ name }}/archive/refs/tags/{{ version }}.tar.gz
+  sha256: bfbf93c70f71236d2aa3d7289accea3306651359c0e58fbe9902441d2b6f439f
+
+build:
+  number: 0
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv
+  skip: False
+  entry_points:
+    - binny = binny.__main__:main
+
+requirements:
+  host:
+    - pip
+    - python >=3.6,<3.11
+  run:
+    - python >=3.6,<3.11
+    - networkx =3.1.0
+    - snakemake =7.19.0
+    - pyarrow =12.0.1
+    - hdbscan =0.8.33
+    - scikit-bio =0.5.9
+    - opentsne =1.0.0
+    - seqkit =2.5.1
+    - mantis_pfa =1.5.5
+    - bedtools =2.31.0
+    - gcc_linux-64
+    - singularity =3.8.6
+    - git
+
+test:
+  commands:
+    - binny --help
+
+about:
+  home: https://github.com/a-h-b/binny
+  license: GPL-3.0-or-later
+  license_family: GPL
+  summary: 'An automated binning algorithm to recover high-quality genomes from complex metagenomic datasets. Note: This is a development version.'
+
+extra:
+  recipe-maintainers:
+    - ohickl
+    - a-h-b
+
diff --git a/recipes/bioawk/meta.yaml b/recipes/bioawk/meta.yaml
index 12bf54695780a..c5dd0a636caf2 100644
--- a/recipes/bioawk/meta.yaml
+++ b/recipes/bioawk/meta.yaml
@@ -7,7 +7,9 @@ source:
   sha256: 5cbef3f39b085daba45510ff450afcf943cfdfdd483a546c8a509d3075ff51b5
 
 build:
-  number: 9
+  number: 10
+  run_exports:
+    - {{ pin_subpackage("bioawk", max_pin="x.x.x") }}  
 
 requirements:
   build:
@@ -28,3 +30,7 @@ about:
   home: https://github.com/lh3/bioawk
   license: Free software license (https://github.com/lh3/bioawk/blob/master/README.awk#L1)
   summary: BWK awk modified for biological data
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/biobambam/meta.yaml b/recipes/biobambam/meta.yaml
index c7d758af69ab6..482c9c1b272d1 100644
--- a/recipes/biobambam/meta.yaml
+++ b/recipes/biobambam/meta.yaml
@@ -12,8 +12,10 @@ source:
   sha256: {{ sha256hash }}
 
 build:
-  number: 3
+  number: 4
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   build:
@@ -31,3 +33,7 @@ about:
   license: GPLv3
   license_file: GPLv3
   summary: Tools for early stage alignment file processing
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/biobb_amber/meta.yaml b/recipes/biobb_amber/meta.yaml
index 17bb48960a304..a83508f495c17 100644
--- a/recipes/biobb_amber/meta.yaml
+++ b/recipes/biobb_amber/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "biobb_amber" %}
-{% set version = "4.0.1" %}
+{% set version = "4.2.0" %}
 
 package:
   name: '{{ name|lower }}'
@@ -7,23 +7,25 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: dd02206a46c994490aed573d3b4977ef2c0f2a59bbb9b67aafdc59e468b03bfc
+  sha256: 11fe9767c895c5de4a2e643f1c2de00f57bb03c8e0835415542c98aec2ca6040
 
 build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   host:
-    - python >=3.7,<3.10
+    - python >=3.8
     - setuptools
-    - biobb_common ==4.0.0
-    - ambertools ==22.0
+    - biobb_common ==4.2.0
+    - ambertools >=22.0
   run:
-    - python >=3.7,<3.10
-    - biobb_common ==4.0.0
-    - ambertools ==22.0
+    - python >=3.8
+    - biobb_common ==4.2.0
+    - ambertools >=22.0
 
 test:
   imports:
diff --git a/recipes/biobb_analysis/meta.yaml b/recipes/biobb_analysis/meta.yaml
index 31300e225e03a..8ba9f1efac1b9 100644
--- a/recipes/biobb_analysis/meta.yaml
+++ b/recipes/biobb_analysis/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "biobb_analysis" %}
-{% set version = "4.0.2" %}
+{% set version = "4.2.0" %}
 
 package:
   name: '{{ name|lower }}'
@@ -7,25 +7,27 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 455757f0292214ead650b4735c5a77010125e326f1e5c601f671331d4e725a9a
+  sha256: e42a054bbc9c066d47443a18ee370dd97632f93de32c44aeb586a19bce85aa37
 
 build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   host:
-    - python >=3.7,<3.10
+    - python >=3.8
     - setuptools
-    - biobb_common ==4.0.0
+    - biobb_common ==4.2.0
     - gromacs ==2022.2
-    - ambertools ==22.0
+    - ambertools >=22.0
   run:
-    - python >=3.7,<3.10
-    - biobb_common ==4.0.0
+    - python >=3.8
+    - biobb_common ==4.2.0
     - gromacs ==2022.2
-    - ambertools ==22.0
+    - ambertools >=22.0
 test:
   imports:
     - biobb_analysis
@@ -41,7 +43,7 @@ about:
   description: "# biobb_analysis\n\n### Introduction\nBiobb_analysis is the Biobb module collection to perform analysis of molecular dynamics simulations.\nBiobb (BioExcel building blocks) packages are Python building blocks that\ncreate\
     \ new layer of compatibility and interoperability over popular\nbioinformatics tools.\nThe latest documentation of this package can be found in our readthedocs site:\n[latest API documentation](http://biobb_analysis.readthedocs.io/en/latest/).\n\
     \n\n### Copyright & Licensing\nThis software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).\
-    \n\n* (c) 2015-2023 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2023 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
+    \n\n* (c) 2015-2024 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2024 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
     Licensed under the\n\
     [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details.\n\
     \n\
diff --git a/recipes/biobb_chemistry/meta.yaml b/recipes/biobb_chemistry/meta.yaml
index 9553a07f2080a..57de45e5e7fa4 100644
--- a/recipes/biobb_chemistry/meta.yaml
+++ b/recipes/biobb_chemistry/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "biobb_chemistry" %}
-{% set version = "4.0.0" %}
+{% set version = "4.2.0" %}
 
 package:
   name: '{{ name|lower }}'
@@ -7,26 +7,28 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 446a9b4c6587cdb98f9c0247b87cd0844389655deaf0eaae618cd4cad884882f
+  sha256: 9691549356d38bbce6b63fe8c66622cca7c704f57ee600133edfbd9bb5d871f0
 
 build:
-  number: 1
+  number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   host:
-    - python >=3.7,<3.10
+    - python >=3.8
     - setuptools
-    - biobb_common ==4.0.0
+    - biobb_common ==4.2.0
     - openbabel ==3.1.1
-    - ambertools ==22.0
+    - ambertools >=22.0
     - acpype ==2022.7.21
   run:
-    - python >=3.7,<3.10
-    - biobb_common ==4.0.0
+    - python >=3.8
+    - biobb_common ==4.2.0
     - openbabel ==3.1.1
-    - ambertools ==22.0
+    - ambertools >=22.0
     - acpype ==2022.7.21
 test:
   imports:
@@ -44,7 +46,7 @@ about:
   description: "# biobb_chemistry\n\n### Introduction\nBiobb_chemistry is the Biobb module collection to perform chemistry over molecular dynamics simulations.\nBiobb (BioExcel building blocks) packages are Python building blocks that\ncreate\
     \ new layer of compatibility and interoperability over popular\nbioinformatics tools.\nThe latest documentation of this package can be found in our readthedocs site:\n[latest API documentation](http://biobb_chemistry.readthedocs.io/en/latest/).\n\
     \n\n### Copyright & Licensing\nThis software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).\
-    \n\n* (c) 2015-2023 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2023 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
+    \n\n* (c) 2015-2024 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2024 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
     Licensed under the\n\
     [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details.\n\
     \n\
diff --git a/recipes/biobb_cmip/meta.yaml b/recipes/biobb_cmip/meta.yaml
index a2b558524cbae..d8dbe24de5f7f 100644
--- a/recipes/biobb_cmip/meta.yaml
+++ b/recipes/biobb_cmip/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "biobb_cmip" %}
-{% set version = "4.0.0" %}
+{% set version = "4.2.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,27 +7,29 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: a201e719c29d9d4b8cee3a74b982ed7bc51be40da3177f93946d5b66905717a2
+  sha256: c3dd9f0f9da33093f3e13792601048a4d1064d65add8456a4a7baa8e27e3d55d
 
 build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   host:
-    - python >=3.7
+    - python >=3.8
     - setuptools
-    - biobb_common ==4.0.0
+    - biobb_common ==4.2.0
     - cmip ==2.7.0
     - mdanalysis >=2.0.0
-    - biobb_structure_checking ==3.13.0
+    - biobb_structure_checking ==3.13.4
   run:
-    - python >=3.7
-    - biobb_common ==4.0.0
+    - python >=3.8
+    - biobb_common ==4.2.0
     - cmip ==2.7.0
     - mdanalysis >=2.0.0
-    - biobb_structure_checking ==3.13.0
+    - biobb_structure_checking ==3.13.4
 
 test:
   imports:
diff --git a/recipes/biobb_common/meta.yaml b/recipes/biobb_common/meta.yaml
index 5087a9c3879c2..dfcfe8ead8166 100644
--- a/recipes/biobb_common/meta.yaml
+++ b/recipes/biobb_common/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "biobb_common" %}
-{% set version = "4.0.0" %}
+{% set version = "4.2.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,25 +7,27 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 6e13d7d9ebae05f686b625f97a8f28a2b30b08accbbeada5fa3cda7a3036a480
+  sha256: f261b4b306670506b2cc45372322000996830541b7c1bcc9e13daa9a903da14b
 
 build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   host:
-    - python >=3.7,<=3.10
+    - python >=3.8.0
     - setuptools
     - pyyaml
     - requests
-    - biopython ==1.79
+    - biopython
   run:
-    - python >=3.7,<=3.10
+    - python >=3.8.0
     - pyyaml
     - requests
-    - biopython ==1.79
+    - biopython
 
 test:
   imports:
@@ -45,7 +47,7 @@ about:
     \n# biobb_common\n\n### Introduction\nBiobb_common is the base package required to use the biobb\npackages.\nBiobb (BioExcel building blocks) packages are Python building blocks that\ncreate new layer\
     \ of compatibility and interoperability over popular\nbioinformatics tools.\nThe latest documentation of this package can be found in our readthedocs site:\n[latest API documentation](http://biobb_common.readthedocs.io/en/latest/).\n\
     \n\n### Copyright & Licensing\n### Copyright & Licensing\nThis software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).\
-    \n\n* (c) 2015-2023 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2023 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
+    \n\n* (c) 2015-2024 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2023 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
     Licensed under the\n\
     [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details.\n\
     \n\
diff --git a/recipes/biobb_cp2k/meta.yaml b/recipes/biobb_cp2k/meta.yaml
index 049c0098d57b0..104cb0718f3ac 100644
--- a/recipes/biobb_cp2k/meta.yaml
+++ b/recipes/biobb_cp2k/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "biobb_cp2k" %}
-{% set version = "4.0.0" %}
+{% set version = "4.2.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,22 +7,24 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: aa1275c4e446828bceb7ed0044d1b6a87a31763f24209f463b049ce9446734bf
+  sha256: 17537ebf02ecd2e66406d61da55334c9df4069d4ccaee4b3de4afac9ff622f30
 
 build:
   number: 0
   noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   host:
-    - python >=3.7,<3.10
+    - python >=3.8
     - setuptools
-    - biobb_common ==3.9.0
+    - biobb_common ==4.2.0
     - cp2k ==7.1.0
 
   run:
-    - python >=3.7,<3.10
-    - biobb_common ==3.9.0
+    - python >=3.8
+    - biobb_common ==4.2.0
     - cp2k ==7.1.0
 
 
@@ -44,7 +46,7 @@ about:
     \n# biobb_cp2k\n\n### Introduction\nBiobb_cp2k allows setup and simulation of QM simulations using CP2K QM package. \nBiobb (BioExcel building blocks) packages are Python building blocks that\ncreate\ 
     \ new layer of compatibility and interoperability over popular\nbioinformatics tools.\nThe latest documentation of this package can be found in our readthedocs site:\n[latest API documentation](http://biobb_ml.readthedocs.io/en/latest/).\n\
     \n\n### Copyright & Licensing\nThis software has been developed in the [MMB group](https://mmb.irbbarcelona.org) at the [BSC](https://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).\
-    \n\n* (c) 2015-2022 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2022 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
+    \n\n* (c) 2015-2024 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2024 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
     Licensed under the\n\
     [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details.\n\
     \n\
diff --git a/recipes/biobb_dna/meta.yaml b/recipes/biobb_dna/meta.yaml
index c3ff6deafabfa..4d6302c4c1491 100644
--- a/recipes/biobb_dna/meta.yaml
+++ b/recipes/biobb_dna/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "biobb_dna" %}
-{% set version = "4.0.0" %}
+{% set version = "4.2.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,30 +7,31 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 102af348de8a0169089353554e74bccf53887c5d411082a7f5ddba8622741a46
+  sha256: f90638917011838f90d88d7d4ba4d09cf5f069305be380b4419c0c46291baa78
 
 build:
   number: 0
   noarch: python
-  script: python setup.py install --single-version-externally-managed --record=record.txt
+  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   host:
-    - python >=3.7,<3.10
+    - python >=3.8
     - setuptools
-    - biobb_common ==4.0.0
-    - pandas ==1.3.0
+    - biobb_common ==4.2.0
+    - pandas >=1.3.0
     - scikit-learn ==0.24.2
     - curves ==3.0.0
 
   run:
-    - python >=3.7,<3.10
-    - biobb_common ==4.0.0
-    - pandas ==1.3.0
+    - python >=3.8
+    - biobb_common ==4.2.0
+    - pandas >=1.3.0
     - scikit-learn ==0.24.2
     - curves ==3.0.0
 
-
 test:
   imports:
     - biobb_dna
@@ -41,9 +42,6 @@ test:
     - biobb_dna.intrabp_correlations
     - biobb_dna.stiffness
 
-
-
-
 about:
   home: https://github.com/bioexcel/biobb_dna
   license: Apache Software License
@@ -56,7 +54,7 @@ about:
     \n# biobb_dna\n\n### Introduction\nBiobb_dna is a package composed of different analyses for nucleic acid trajectories. \nBiobb (BioExcel building blocks) packages are Python building blocks that\ncreate\ 
     \ new layer of compatibility and interoperability over popular\nbioinformatics tools.\nThe latest documentation of this package can be found in our readthedocs site:\n[latest API documentation](http://biobb_ml.readthedocs.io/en/latest/).\n\
     \n\n### Copyright & Licensing\nThis software has been developed in the [MMB group](https://mmb.irbbarcelona.org) at the [BSC](https://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).\
-    \n\n* (c) 2015-2023 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2023 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
+    \n\n* (c) 2015-2024 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2024 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
     Licensed under the\n\
     [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details.\n\
     \n\
diff --git a/recipes/biobb_flexdyn/meta.yaml b/recipes/biobb_flexdyn/meta.yaml
index 5189cfedd0409..4dbcdc7bf02be 100644
--- a/recipes/biobb_flexdyn/meta.yaml
+++ b/recipes/biobb_flexdyn/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "biobb_flexdyn" %}
-{% set version = "4.0.3" %}
+{% set version = "4.2.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,26 +7,28 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 3acde837a06dfe623321b6868ab59df7e6702a05f5c36869c7d6008b23a4655b 
+  sha256: 5cfe112fb35a86fff4d452efb966fa18757bad4ea1f4017b226e765a8e6f776e 
 
 build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   host:
-    - python >=3.7,<3.10
+    - python >=3.8
     - setuptools
-    - biobb_common ==4.0.0
+    - biobb_common ==4.2.0
     - concoord
     - prody
     - imods
     - nolb
 
   run:
-    - python >=3.7,<3.10
-    - biobb_common ==4.0.0
+    - python >=3.8
+    - biobb_common ==4.2.0
     - concoord
     - prody
     - imods
@@ -45,7 +47,7 @@ about:
   description: "# biobb_flexdyn\n\n### Introduction\nBiobb_flexdyn allows the calculation of protein conformational transitions using the GOdMD package. \nBiobb (BioExcel building blocks) packages are Python building blocks that\ncreate\ 
     \ new layer of compatibility and interoperability over popular\nbioinformatics tools.\nThe latest documentation of this package can be found in our readthedocs site:\n[latest API documentation](http://biobb_ml.readthedocs.io/en/latest/).\n\
     \n\n### Copyright & Licensing\nThis software has been developed in the [MMB group](https://mmb.irbbarcelona.org) at the [BSC](https://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).\
-    \n\n* (c) 2015-2023 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2023 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
+    \n\n* (c) 2015-2024 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2024 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
     Licensed under the\n\
     [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details.\n\
     \n\
diff --git a/recipes/biobb_flexserv/meta.yaml b/recipes/biobb_flexserv/meta.yaml
index 05f2a3336740a..a766b6d8ff5cd 100644
--- a/recipes/biobb_flexserv/meta.yaml
+++ b/recipes/biobb_flexserv/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "biobb_flexserv" %}
-{% set version = "4.0.3" %}
+{% set version = "4.2.0" %}
 
 package:
   name: '{{ name|lower }}'
@@ -7,24 +7,26 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 8754c5050281fd07c5c7797de5d91a8d741b6658ad260752e0582959ff4afc14 
+  sha256: 62b3ecb6dacca9cd0496dec9e6ebe5e43e4d0e3fcfd8b122a20dda940d49162e 
 
 build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   host:
-    - python >=3.7,<3.10
+    - python >=3.8
     - setuptools
-    - biobb_common ==4.0.0
+    - biobb_common ==4.2.0
     - flexserv ==1.0.2
     - pcasuite ==1.0.0
     - perl
   run:
-    - python >=3.7,<3.10
-    - biobb_common ==4.0.0
+    - python >=3.8
+    - biobb_common ==4.2.0
     - flexserv ==1.0.2
     - pcasuite ==1.0.0
     - perl
diff --git a/recipes/biobb_godmd/meta.yaml b/recipes/biobb_godmd/meta.yaml
index 411a605272f6c..acf1ed0f9ff70 100644
--- a/recipes/biobb_godmd/meta.yaml
+++ b/recipes/biobb_godmd/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "biobb_godmd" %}
-{% set version = "4.0.1" %}
+{% set version = "4.2.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,24 +7,26 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 170e82621f501dc9d624ac6a324936dfb90b38e55dece06f64495ab5c1fd504f 
+  sha256: f697f96f216ce439e058d46842a2507ada30221d7048628fb83676ebf5806c50
 
 build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   host:
-    - python >=3.7,<3.10
+    - python >=3.8
     - setuptools
-    - biobb_common ==4.0.0
+    - biobb_common ==4.2.0
     - godmd ==1.0.0
     - emboss
 
   run:
-    - python >=3.7,<3.10
-    - biobb_common ==4.0.0
+    - python >=3.8
+    - biobb_common ==4.2.0
     - godmd ==1.0.0
     - emboss
 
@@ -43,7 +45,7 @@ about:
   description: "# biobb_godmd\n\n### Introduction\nBiobb_godmd allows the calculation of protein conformational transitions using the GOdMD package. \nBiobb (BioExcel building blocks) packages are Python building blocks that\ncreate\ 
     \ new layer of compatibility and interoperability over popular\nbioinformatics tools.\nThe latest documentation of this package can be found in our readthedocs site:\n[latest API documentation](http://biobb_ml.readthedocs.io/en/latest/).\n\
     \n\n### Copyright & Licensing\nThis software has been developed in the [MMB group](https://mmb.irbbarcelona.org) at the [BSC](https://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).\
-    \n\n* (c) 2015-2023 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2023 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
+    \n\n* (c) 2015-2024 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2024 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
     Licensed under the\n\
     [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details.\n\
     \n\
diff --git a/recipes/biobb_gromacs/meta.yaml b/recipes/biobb_gromacs/meta.yaml
index ec2e567c51ef0..97fedbdf54538 100644
--- a/recipes/biobb_gromacs/meta.yaml
+++ b/recipes/biobb_gromacs/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "biobb_gromacs" %}
-{% set version = "4.0.0" %}
+{% set version = "4.2.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,22 +7,24 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 4d969fa0d6547f32bd0d53dad6eff3126e64ef372a5002a6034b321e78b5d6f2
+  sha256: dc57bbba78f24fedc9931197fb321428d27078b56b41dd1aafd822c68387cb73
 
 build:
-  number: 1
+  number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   host:
-    - python >=3.7,<=3.10
+    - python >=3.8
     - setuptools
-    - biobb_common ==4.0.0
+    - biobb_common ==4.2.0
     - gromacs ==2022.2
   run:
-    - python >=3.7,<=3.10
-    - biobb_common ==4.0.0
+    - python >=3.8
+    - biobb_common ==4.2.0
     - gromacs ==2022.2
 
 test:
@@ -40,7 +42,7 @@ about:
   description: "# biobb_gromacs\n\n### Introduction\nBiobb_gromacs is the Biobb module collection to perform molecular dynamics simulationsusing the GROMACS MD suite.\nBiobb (BioExcel building blocks) packages are Python building blocks that\ncreate\
     \ new layer of compatibility and interoperability over popular\nbioinformatics tools.\nThe latest documentation of this package can be found in our readthedocs site:\n[latest API documentation](http://biobb-gromacs.readthedocs.io/en/latest/).\n\
     \n\n### Copyright & Licensing\nThis software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).\
-    \n\n* (c) 2015-2023 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2022 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
+    \n\n* (c) 2015-2024 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2024 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
     Licensed under the\n\
     [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details.\n\
     \n\
diff --git a/recipes/biobb_io/meta.yaml b/recipes/biobb_io/meta.yaml
index 40f914d1cccde..57c59c65fe2fd 100644
--- a/recipes/biobb_io/meta.yaml
+++ b/recipes/biobb_io/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "biobb_io" %}
-{% set version = "4.0.0" %}
+{% set version = "4.2.0" %}
 
 package:
   name: '{{ name|lower }}'
@@ -7,21 +7,23 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: b8b04c1caaa020bed95c24932009f1d96f180bcdf526e2736e4621dcf55727c9
+  sha256: e20b38cb73e956eccd0ff61fef5212da2e52cb7c625664794a50f24b7cfbecd3
 
 build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   host:
-    - python >=3.7,<3.10
+    - python >=3.8
     - setuptools
-    - biobb_common ==4.0.0
+    - biobb_common ==4.2.0
   run:
-    - python >=3.7,<3.10
-    - biobb_common ==4.0.0
+    - python >=3.8
+    - biobb_common ==4.2.0
 test:
   imports:
     - biobb_io
@@ -43,7 +45,7 @@ about:
     \ building blocks that\ncreate new layer of compatibility and interoperability over popular\nbioinformatics tools.\nThe latest documentation of this package can be found in our readthedocs site:\n[latest\
     \ API documentation](http://biobb_io.readthedocs.io/en/latest/).\n\
     \n\n### Copyright & Licensing\nThis software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).\
-    \n\n* (c) 2015-2023 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2023 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
+    \n\n* (c) 2015-2024 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2024 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
     Licensed under the\n\
     [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details.\n\
     \n\
diff --git a/recipes/biobb_ml/meta.yaml b/recipes/biobb_ml/meta.yaml
index 7e9598835845a..056da3e087d1a 100644
--- a/recipes/biobb_ml/meta.yaml
+++ b/recipes/biobb_ml/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "biobb_ml" %}
-{% set version = "4.0.0" %}
+{% set version = "4.2.0" %}
 
 package:
   name: '{{ name|lower }}'
@@ -7,32 +7,34 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: e1c27daecb98f2de73bb9e72d7df8b79a76905438899809e0ef6c6dd92b47f33
+  sha256: 815613f1c4e36d66a1181ad64fd6e7dc3e523d16ab5ccac0545f27d20bb4e645
 
 build:
-  number: 1
+  number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   host:
-    - python >=3.7,<3.10
+    - python >=3.8
     - setuptools
-    - biobb_common ==4.0.0
+    - biobb_common ==4.2.0
     - numpy ==1.19.5
     - h5py ==2.10.0
-    - pandas ==1.3.0
+    - pandas >=1.3.0
     - scikit-learn ==0.24.2
     - seaborn ==0.10.1
     - tensorflow >=2.4.2
     - imbalanced-learn ==0.7.0
 
   run:
-    - python >=3.7,<3.10
-    - biobb_common ==4.0.0
+    - python >=3.8
+    - biobb_common ==4.2.0
     - numpy ==1.19.5
     - h5py ==2.10.0
-    - pandas ==1.3.0
+    - pandas >=1.3.0
     - scikit-learn ==0.24.2
     - seaborn ==0.10.1
     - tensorflow >=2.4.2
@@ -57,7 +59,7 @@ about:
   description: "# biobb_ml\n\n### Introduction\nBiobb_ml is the Biobb module collection to perform machine learning predictions. \nBiobb (BioExcel building blocks) packages are Python building blocks that\ncreate\ 
     \ new layer of compatibility and interoperability over popular\nbioinformatics tools.\nThe latest documentation of this package can be found in our readthedocs site:\n[latest API documentation](http://biobb_ml.readthedocs.io/en/latest/).\n\
     \n\n### Copyright & Licensing\nThis software has been developed in the [MMB group](https://mmb.irbbarcelona.org) at the [BSC](https://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).\
-    \n\n* (c) 2015-2023 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2023 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
+    \n\n* (c) 2015-2024 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2024 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
     Licensed under the\n\
     [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details.\n\
     \n\
diff --git a/recipes/biobb_model/meta.yaml b/recipes/biobb_model/meta.yaml
index 9262241130c4d..1ed945664363c 100644
--- a/recipes/biobb_model/meta.yaml
+++ b/recipes/biobb_model/meta.yaml
@@ -1,8 +1,8 @@
 {% set name = "biobb_model" %}
-{% set version = "4.0.1" %}
+{% set version = "4.1.0" %}
 {% set file_ext = "tar.gz" %}
 {% set hash_type = "sha256" %}
-{% set hash_value = "de36a7b81a20133f5538b1b0ee99dca8be0762fc834c5261130199bcf7d0fb26" %}
+{% set hash_value = "616898c26c8196fcf109c97fc03103d1cf5c9cf3eda22bdef5420393cc1906c6" %}
 
 package:
   name: '{{ name|lower }}'
@@ -16,18 +16,20 @@ build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   host:
-    - python >=3.7,<3.10
+    - python >=3.8
     - setuptools
-    - biobb_common ==4.0.0
-    - biobb_structure_checking >=3.13.0
+    - biobb_common ==4.1.0
+    - biobb_structure_checking >=3.13.4
     - xmltodict
   run:
-    - python >=3.7,<3.10
-    - biobb_common ==4.0.0
-    - biobb_structure_checking >=3.13.0
+    - python >=3.8
+    - biobb_common ==4.1.0
+    - biobb_structure_checking >=3.13.4
     - xmltodict
 test:
   imports:
diff --git a/recipes/biobb_pdb_tools/meta.yaml b/recipes/biobb_pdb_tools/meta.yaml
new file mode 100644
index 0000000000000..45ccfd16c2a46
--- /dev/null
+++ b/recipes/biobb_pdb_tools/meta.yaml
@@ -0,0 +1,52 @@
+{% set name = "biobb_pdb_tools" %}
+{% set version = "4.2.0" %}
+
+package:
+  name: '{{ name|lower }}'
+  version: '{{ version }}'
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: 025d968ba5a5cee692f03d756f0fc474d7dcdec10e2babf150ad10af205aae25
+
+build:
+  number: 0
+  noarch: python
+  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
+
+requirements:
+  host:
+    - python >=3.8
+    - setuptools
+    - biobb_common ==4.2.0
+    - pdb-tools
+  run:
+    - python >=3.8
+    - biobb_common ==4.2.0
+    - pdb-tools
+test:
+  imports:
+    - biobb_pdb_tools
+    - biobb_pdb_tools.pdb_tools
+
+about:
+  home: https://github.com/bioexcel/biobb_pdb_tools
+  license: Apache Software License
+  license_family: APACHE
+  license_file: ''
+  summary: Biobb_pdb_tools is a swiss army knife for manipulating and editing PDB files.
+  description: "# biobb_pdb_tools\n\n### Introduction\biobb_pdb_tools is a swiss army knife for manipulating and editing PDB files.\nBiobb (BioExcel building blocks) packages are Python building blocks that\ncreate\
+    \ new layer of compatibility and interoperability over popular\nbioinformatics tools.\nThe latest documentation of this package can be found in our readthedocs site:\n[latest API documentation](https://biobb-pdb-tools.readthedocs.io/en/latest/).\n\
+    \n\n### Copyright & Licensing\nThis software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).\
+    \n\n* (c) 2015-2024 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2024 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
+    Licensed under the\n\
+    [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details.\n\
+    \n\
+    ![](https://bioexcel.eu/wp-content/uploads/2019/04/Bioexcell_logo_1080px_transp.png \"Bioexcel\")\n\n\n"
+  doc_url: ''
+  dev_url: ''
+
+extra:
+  recipe-maintainers: ''
diff --git a/recipes/biobb_pmx/meta.yaml b/recipes/biobb_pmx/meta.yaml
index 7163a4519a56e..19c25a08f9dea 100644
--- a/recipes/biobb_pmx/meta.yaml
+++ b/recipes/biobb_pmx/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "biobb_pmx" %}
-{% set version = "4.0.0" %}
+{% set version = "4.2.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,24 +7,25 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 0cd175a08b6d861d5ddc3c7b231eb92571649f8eadcc54936000c42930cc7792
+  sha256: 94c2b6ef6240423e92ef9eb0cf038d8d98fd6101ff5026960d5c3e740a37f671
 
 
 build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
-
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   host:
-    - python >=3.7
+    - python >=3.8
     - setuptools
-    - biobb_common ==4.0.0
+    - biobb_common ==4.2.0
     - pmx_biobb ==4.1.3
   run:
-    - python >=3.7
-    - biobb_common ==4.0.0
+    - python >=3.8
+    - biobb_common ==4.2.0
     - pmx_biobb ==4.1.3
 test:
   imports:
@@ -41,10 +42,10 @@ about:
     [![](https://img.shields.io/badge/docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_pmx)\n[![](https://www.singularity-hub.org/static/img/hosted-singularity--hub-%23e32929.svg)](https://www.singularity-hub.org/collections/2735/usage)\n\
     [![](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0)\n\n# biobb_pmx\n\n### Introduction\nBiobb_pmx is the Biobb module collection to perform\
     \ PMX (http://pmx.mpibpc.mpg.de) executions.\nBiobb (BioExcel building blocks) packages are Python building blocks that\ncreate new layer of compatibility and interoperability over popular\nbioinformatics\
-    \ tools.\nThe latest documentation of this package can be found in our readthedocs site:\n[latest API documentation](http://biobb_pmx.readthedocs.io/en/latest/).\n\n### Version\nv1.0.0 April 2019 Release\n\
+    \ tools.\nThe latest documentation of this package can be found in our readthedocs site:\n[latest API documentation](http://biobb_pmx.readthedocs.io/en/latest/).\n\n### Version\nv4.2.0 May 2024 Release\n\
     \n\n### Copyright & Licensing\n\
     \ This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/),\
-    \ funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).\n\n* (c) 2015-2019 [Barcelona Supercomputing\
+    \ funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).\n\n* (c) 2015-2024 [Barcelona Supercomputing\
     \ Center](https://www.bsc.es/)\n* (c) 2015-2022 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\nLicensed under the\n[Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0),\
     \ see the file LICENSE for details.\n\n![](https://bioexcel.eu/wp-content/uploads/2019/04/Bioexcell_logo_1080px_transp.png \"Bioexcel\")\n\n\n"
   doc_url: ''
diff --git a/recipes/biobb_pytorch/meta.yaml b/recipes/biobb_pytorch/meta.yaml
new file mode 100644
index 0000000000000..6317ca43bd0fc
--- /dev/null
+++ b/recipes/biobb_pytorch/meta.yaml
@@ -0,0 +1,53 @@
+{% set name = "biobb_pytorch" %}
+{% set version = "4.2.0" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: 2adef511330e1cca5dba12c501cf3f2cbff401b9cedce7bc3e04821dc69c23b3
+
+build:
+  number: 0
+  noarch: python
+  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
+
+requirements:
+  host:
+    - python >=3.8
+    - setuptools
+    - biobb_common ==4.2.0
+    - pytorch
+  run:
+    - python >=3.8
+    - biobb_common ==4.2.0
+    - pytorch
+
+test:
+  imports:
+    - biobb_pytorch
+    - biobb_pytorch.mdae
+
+about:
+  home: https://github.com/bioexcel/biobb_pytorch
+  license: Apache Software License
+  license_family: APACHE
+  license_file: ''
+  summary: biobb_pytorch is the Biobb module collection to create and train ML & DL models.
+  description: "# biobb_pytorch\n\n### Introduction\nBiobb_Pytorch is the Biobb module collection to create and train ML & DL models using the popular [PyTorch](https://pytorch.org/) Python library.
+    Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over popular bioinformatics tools. The latest documentation of this package can be found in our readthedocs site: [latest API documentation](http://biobb-pytorch.readthedocs.io/en/latest/).\n\
+    \n\n### Copyright & Licensing\nThis software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).\
+    \n\n* (c) 2015-2024 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2024 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
+    Licensed under the\n\
+    [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details.\n\
+    \n\
+    ![](https://bioexcel.eu/wp-content/uploads/2019/04/Bioexcell_logo_1080px_transp.png \"Bioexcel\")\n\n\n"
+  doc_url: http://biobb_pytorch.readthedocs.io/en/latest/
+  dev_url: https://github.com/bioexcel/biobb_pytorch
+
+extra:
+  recipe-maintainers: PauAndrio
diff --git a/recipes/biobb_structure_checking/meta.yaml b/recipes/biobb_structure_checking/meta.yaml
index 60e6a96ea66ab..56a00c5124d72 100644
--- a/recipes/biobb_structure_checking/meta.yaml
+++ b/recipes/biobb_structure_checking/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "biobb_structure_checking" %}
-{% set version = "3.13.3" %}
+{% set version = "3.13.4" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,16 +7,19 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: ed0b9d85ce12326d1bbfe3f025c81be865a4281c38ee2ec86c1cdb2c7dc2d431
+  sha256: d819819d13c7ad219411b70b043555dcd65d5535f696a1121db562646931f445
 
 build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
+
 
 requirements:
   host:
-    - python >=3.7
+    - python >=3.8
     - setuptools
     - pip
     - numpy
@@ -24,7 +27,7 @@ requirements:
     - psutil
 
   run:
-    - python >=3.7
+    - python >=3.8
     - setuptools
     - pip
     - numpy
diff --git a/recipes/biobb_structure_utils/meta.yaml b/recipes/biobb_structure_utils/meta.yaml
index f4dca816d2047..5680dbfaf172b 100644
--- a/recipes/biobb_structure_utils/meta.yaml
+++ b/recipes/biobb_structure_utils/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "biobb_structure_utils" %}
-{% set version = "4.0.0" %}
+{% set version = "4.2.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,24 +7,26 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 1ca56a2d12600b057bd3d6db514a1edc38bb72f8a2de106bc696169463dd9b79
+  sha256: 71bdb3e2a86a0ddfe22d7e292103df6437a3079a06954446f8b28fcc7112d92a
 
 build:
-  number: 1
+  number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 
 requirements:
   host:
-    - python >=3.7,<3.10
+    - python >=3.8
     - setuptools
-    - biobb_common ==4.0.0
-    - biobb_structure_checking ==3.13.0
+    - biobb_common ==4.2.0
+    - biobb_structure_checking ==3.13.4
   run:
-    - python >=3.7,<3.10
-    - biobb_common ==4.0.0
-    - biobb_structure_checking ==3.13.0
+    - python >=3.8
+    - biobb_common ==4.2.0
+    - biobb_structure_checking ==3.13.4
 test:
   imports:
     - biobb_structure_utils
@@ -45,7 +47,7 @@ about:
     \ removing water molecules or ligands, or renumbering or sorting atoms or residues. Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility\
     \ and interoperability over popular bioinformatics tools. The latest documentation of this package can be found in our readthedocs site:\n[latest API documentation](http://biobb_structure_utils.readthedocs.io/en/latest/).\n\
     \n\n### Copyright & Licensing\nThis software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).\
-    \n\n* (c) 2015-2023 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2023 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
+    \n\n* (c) 2015-2024 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2024 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
     Licensed under the\n\
     [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details.\n\
     \n\
diff --git a/recipes/biobb_vs/meta.yaml b/recipes/biobb_vs/meta.yaml
index 88024dd591d11..067b1466bc709 100644
--- a/recipes/biobb_vs/meta.yaml
+++ b/recipes/biobb_vs/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "biobb_vs" %}
-{% set version = "4.0.0" %}
+{% set version = "4.2.0" %}
 
 package:
   name: '{{ name|lower }}'
@@ -7,25 +7,27 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: e586d0576a4f41ccd05098170e46b7113a44f87b322937dff78dc8ff48a37429
+  sha256: 8b658f8fcd07386fd991fd7ca38e3384501cacef0cb4319d9461552d53f38f45
 
 build:
-  number: 2
+  number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   host:
-    - python >=3.7,<3.10
+    - python >=3.8
     - setuptools
-    - biobb_common ==4.0.0
+    - biobb_common ==4.2.0
     - vina ==1.2.3
-    - fpocket ==3.1.4.2
+    - fpocket ==4.1
   run:
-    - python >=3.7,<3.10
-    - biobb_common ==4.0.0
+    - python >=3.8
+    - biobb_common ==4.2.0
     - vina ==1.2.3
-    - fpocket ==3.1.4.2
+    - fpocket ==4.1
 
 test:
   imports:
@@ -43,7 +45,7 @@ about:
   description: "# biobb_vs\n\n### Introduction\nBiobb_vs is the Biobb module collection to perform virtual screening studies.\nBiobb (BioExcel building blocks) packages are Python building blocks that\ncreate\
     \ new layer of compatibility and interoperability over popular\nbioinformatics tools.\nThe latest documentation of this package can be found in our readthedocs site:\n[latest API documentation](http://biobb-vs.readthedocs.io/en/latest/).\n\
     \n\n### Copyright & Licensing\nThis software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).\
-    \n\n* (c) 2015-2023 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2023 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
+    \n\n* (c) 2015-2024 [Barcelona Supercomputing Center](https://www.bsc.es/)\n* (c) 2015-2024 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/)\n\
     Licensed under the\n\
     [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details.\n\
     \n\
diff --git a/recipes/bioblend/meta.yaml b/recipes/bioblend/meta.yaml
index 884a589adf76a..1211834359a86 100644
--- a/recipes/bioblend/meta.yaml
+++ b/recipes/bioblend/meta.yaml
@@ -1,25 +1,29 @@
-{% set version = "1.2.0" %}
+{% set name = "bioblend" %}
+{% set version = "1.3.0" %}
 
 package:
-  name: bioblend
+  name: {{ name }}
   version: {{ version }}
 
 source:
   url: https://pypi.io/packages/source/b/bioblend/bioblend-{{ version }}.tar.gz
-  sha256: 90be67c5e0dbdb1235fd9a8cb463b5ded1c6a2d6a8303913649068973d037903
+  sha256: e72318e10c29a81c16281d25aaac00989a07fc2900be7479137964232cc4a507
 
 build:
-  noarch: python
-  script: python -m pip install --no-deps --ignore-installed .
   number: 0
+  noarch: python
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation --no-cache-dir . -vvv
+  entry_points:
+    - bioblend-galaxy-tests = bioblend._tests.pytest_galaxy_test_wrapper:main [testing]
+  run_exports:
+    - {{ pin_subpackage('bioblend', max_pin="x") }}
 
 requirements:
   host:
-    - python >=3.7
-    - setuptools
+    - python >=3.8
     - pip
   run:
-    - python >=3.7
+    - python >=3.8
     - requests >=2.20.0
     - requests-toolbelt >=0.5.1,!=0.9.0
     - tuspy
@@ -60,7 +64,10 @@ test:
     - bioblend.util
 
 about:
-  home: https://bioblend.readthedocs.org/
-  license: MIT License
+  home: "https://github.com/galaxyproject/bioblend"
+  license: MIT
   summary: 'A Python library for interacting with the Galaxy API'
   license_family: MIT
+  license_file: LICENSE
+  doc_url: "https://bioblend.readthedocs.org/"
+  dev_url: "https://github.com/galaxyproject/bioblend"
diff --git a/recipes/biocamlib/build.sh b/recipes/biocamlib/build.sh
new file mode 100644
index 0000000000000..1851efa249a27
--- /dev/null
+++ b/recipes/biocamlib/build.sh
@@ -0,0 +1,17 @@
+#!/bin/bash
+if [ "$(uname)" == "Darwin" ]; then
+    echo "Installing BiOCamLib for OSX."
+else 
+    echo "Installing BiOCamLib for Linux"
+fi
+
+mkdir -p $PREFIX/bin
+cp $SRC_DIR/FASTools $PREFIX/bin
+cp $SRC_DIR/Parallel $PREFIX/bin
+cp $SRC_DIR/Octopus $PREFIX/bin
+cp $SRC_DIR/RC $PREFIX/bin
+
+chmod +x $PREFIX/bin/FASTools
+chmod +x $PREFIX/bin/Parallel
+chmod +x $PREFIX/bin/Octopus
+chmod +x $PREFIX/bin/RC
\ No newline at end of file
diff --git a/recipes/biocamlib/meta.yaml b/recipes/biocamlib/meta.yaml
new file mode 100644
index 0000000000000..5c9bd52dd6bc1
--- /dev/null
+++ b/recipes/biocamlib/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "biocamlib" %}
+{% set version = "1.0.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  - url: https://github.com/PaoloRibeca/BiOCamLib/releases/download/v{{ version }}/BiOCamLib-{{ version }}-Linux_x86-64.tar.xz  # [linux]
+    sha256: bd08b1fe1949cb2faa98b46b40a99c84f0f5581515e337bab50111b11d9c7f12  # [linux]
+  - url: https://github.com/PaoloRibeca/BiOCamLib/releases/download/v{{ version }}/BiOCamLib-{{ version }}-MacOS_x86-64.tar.xz  # [osx]
+    sha256: e55766df1e0af12f825ab1fe244841b70b8ccce9c764b60acc56d4386d3ce9bb  # [osx]
+
+build:
+  run_exports:
+    {{ pin_subpackage(name, max_pin="x") }}
+  number: 0
+  skip: true  # [win]
+
+test:
+  commands:
+    - Parallel -V
+    - FASTools -V  
+    - Octopus -V
+    - RC -V
+
+about:
+  home: https://github.com/PaoloRibeca/BiOCamLib
+  license: GPL-3.0-only
+  license_file: LICENSE
+  summary: 'An OCaml foundation upon which a number of the bioinformatics tools are built.'
+  description: |
+    BiOCamLib is an OCaml foundation upon which a number of the bioinformatics tools are built,
+    including KPop <https://github.com/PaoloRibeca/KPop>. It consists of four tools:
+    1. RC, which can efficiently compute the reverse complement of sequences.
+    2. Octopus, which is a high-throughput program to compute the transitive closure of strings.
+    3. Parallel, which allows the splits and processes an input file chunk-wise using a reader/workers/writer model.
+    4. FASTools, which is a Swiss-knife tool for the manipulation of FASTA/FASTQ files.
+
+  dev_url: https://github.com/PaoloRibeca/BiOCamLib
+
+extra:
+  recipe-maintainers:
+    - PaoloRibeca
+    - ryanmorrison22
+  skip-lints:
+    - should_be_noarch_generic
diff --git a/recipes/biocantor/meta.yaml b/recipes/biocantor/meta.yaml
index 73001a3725e94..fc55c29b506a0 100644
--- a/recipes/biocantor/meta.yaml
+++ b/recipes/biocantor/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "biocantor" %}
-{% set version = "1.0.0" %}
-{% set sha256 = "93263bd000d711e401518a4de7420f21dda420b6b1c09d6c4149fea3b9a9b9be" %}
+{% set version = "1.1.0" %}
+{% set sha256 = "ea06f10f589d54b30dbf432a9b3f6e9c65f8f371c88c706505dfd115c05ed635" %}
 
 package:
   name: "{{ name|lower }}"
@@ -14,6 +14,8 @@ build:
   noarch: python
   number: 0
   script: "{{ PYTHON }} -m pip install .[io] --ignore-installed --no-deps -vv"
+  run_exports:
+    - {{ pin_subpackage("biocantor", max_pin="x") }}
 
 requirements:
   host:
@@ -39,5 +41,5 @@ about:
   home: "https://github.com/ifiddes/BioCantor"
   license: MIT
   license_family: MIT
-  license_file: LICENSE.txt
+  license_file: LICENSE
   summary: "Coordinate Maniuplation and Genome Annotation Data Model"
diff --git a/recipes/biocode/biocode.patch b/recipes/biocode/biocode.patch
deleted file mode 100644
index 2b3d9f2ded9f8..0000000000000
--- a/recipes/biocode/biocode.patch
+++ /dev/null
@@ -1,23 +0,0 @@
-From 028ea8130db125bcb546bbc90dbdf44c5b5b0d5b Mon Sep 17 00:00:00 2001
-From: Gerry Tonkin-Hill <gqt20@cam.ac.uk>
-Date: Mon, 15 Aug 2022 12:26:17 +0100
-Subject: [PATCH] remove old script
-
----
- setup.py | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
-diff --git a/setup.py b/setup.py
-index 5a96f71..ec9f63d 100644
---- a/setup.py
-+++ b/setup.py
-@@ -22,7 +22,7 @@ setup(name='biocode',
-       license='MIT',
-       long_description=read('README.rst'),
-       packages=['biocode'],
--      scripts=['bin/append_to_column_9_value.py', 'bin/prepend_to_fasta_header.py', 'bin/download_assemblies_from_genbank.py', 'bin/convert_augustus_to_gff3.py', 'bin/convert_gff3_to_ncbi_tbl.py', 'bin/mark_partial_genes.py', 'bin/filter_fasta_by_abundance.py', 'bin/validate_feature_boundaries_on_molecules.py', 'bin/add_polypeptide_to_gff3_gene_models.py', 'bin/select_training_and_evaluation_transcripts.py', 'bin/filter_fasta_by_type.py', 'bin/filter_uniref_by_taxonomy.py', 'bin/remove_orphaned_features.py', 'bin/convert_blast_btab_to_bed.py', 'bin/replace_gff_type_column_value.py', 'bin/convert_blast_btab_to_gff3.py', 'bin/interleave_fastq.py', 'bin/split_isoforms_into_individual_genes.py', 'bin/make_cufflinks_ids_unique.py', 'bin/convert_gff3_to_gbk.py', 'bin/make_go_slim_index.py', 'bin/eggnog_to_sqlite3.py', 'bin/convert_metagenemark_gff_to_gff3.py', 'bin/append_to_fasta_header.py', 'bin/merge_bam_files.py', 'bin/remove_masked_gene_models.py', 'bin/filter_fastq_by_N_content.py', 'bin/uniref_to_sqlite3.py', 'bin/uniprot_sprot_to_sqlite3.py', 'bin/reverse_misordered_cds_coords.py', 'bin/update_selected_column9_values.py', 'bin/convert_gff3_to_gene_association_format.py', 'bin/interleave_fasta.py', 'bin/make_go_slim.py', 'bin/join_columnar_files.py', 'bin/split_interleaved_sequence_file.py', 'bin/merge_masked_fasta_files.py', 'bin/hmmlib_to_sqlite3.py', 'bin/fasta_size_distribution_plot.py', 'bin/report_gff3_statistics.py', 'bin/reformat_fasta_residue_lengths.py', 'bin/convert_cufflinks_gtf_to_gff3.py', 'bin/list_biocode.py', 'bin/fasta_simple_stats.py', 'bin/fastq_simple_stats.py', 'bin/convert_prodigal_to_gff3.py', 'bin/convert_scipio_gff_to_gff3.py', 'bin/filter_gff3_by_id_list.py', 'bin/reorient_sequences_by_id.py', 'bin/convert_fastq_to_fasta.py', 'bin/create_rsem_html_table.py', 'bin/convert_glimmerHMM_gff_to_gff3.py', 'bin/convert_genbank_to_gff3.py', 'bin/replace_homopolymeric_repeats_with_Ns.py', 'bin/split_fasta_into_even_files.py', 'bin/get_mpilup_from_id_list.py', 'bin/convert_gff_to_ncbi_gff3.py', 'bin/create_taxonomic_profile_from_blast.py', 'bin/convert_fasta_contigs_to_gff3.py', 'bin/merge_fasta_files_and_uniquify_ids.py', 'bin/merge_predicted_gff3.py', 'bin/filter_fasta_by_header_regex.py', 'bin/convert_pasa_gff_to_models.py', 'bin/extract_fasta_regions.py', 'bin/set_source_column.py', 'bin/tigrfam_info_to_sqlite3.py', 'bin/add_gff3_locus_tags.py', 'bin/fasta_base_content.py', 'bin/subsample_fasta.py', 'bin/convert_gff3_to_bed.py', 'bin/compare_gene_structures.py', 'bin/validate_fasta.py', 'bin/randomly_subsample_fastq.py', 'bin/append_to_fastq_read_header.py', 'bin/convert_aat_btab_to_gff3.py', 'bin/check_for_embedded_fasta_headers.py', 'bin/convert_htab_to_bed.py', 'bin/correct_gff3_CDS_phase_column.py', 'bin/report_coverage_gaps.py', 'bin/detect_inverted_repeats.py', 'bin/convert_cegma_gff_to_gff3.py', 'bin/remove_duplicate_features.py', 'bin/remove_duplicate_sequences.py', 'bin/create_taxonomy_db.py', 'bin/calculate_query_coverage_by_blast.py', 'bin/report_or_replace_nonstandard_residues.py', 'bin/write_fasta_from_gff.py', 'bin/filter_uniref_by_repid.py', 'bin/check_gff_for_internal_stops.py', 'bin/report_basic_gff_model_agreement.py', 'bin/calculate_gene_coverage_from_assembly.py', 'bin/report_gff_intron_and_intergenic_stats.py', 'bin/extend_genes_to_stops.py', 'bin/report_go_slim_counts.py', 'bin/make_go_index.py', 'bin/split_molecules_on_gaps.py'],
-+      scripts=['bin/append_to_column_9_value.py', 'bin/prepend_to_fasta_header.py', 'bin/download_assemblies_from_genbank.py', 'bin/convert_augustus_to_gff3.py', 'bin/convert_gff3_to_ncbi_tbl.py', 'bin/mark_partial_genes.py', 'bin/filter_fasta_by_abundance.py', 'bin/validate_feature_boundaries_on_molecules.py', 'bin/add_polypeptide_to_gff3_gene_models.py', 'bin/select_training_and_evaluation_transcripts.py', 'bin/filter_fasta_by_type.py', 'bin/filter_uniref_by_taxonomy.py', 'bin/remove_orphaned_features.py', 'bin/convert_blast_btab_to_bed.py', 'bin/replace_gff_type_column_value.py', 'bin/convert_blast_btab_to_gff3.py', 'bin/interleave_fastq.py', 'bin/split_isoforms_into_individual_genes.py', 'bin/make_cufflinks_ids_unique.py', 'bin/convert_gff3_to_gbk.py', 'bin/make_go_slim_index.py', 'bin/eggnog_to_sqlite3.py', 'bin/convert_metagenemark_gff_to_gff3.py', 'bin/append_to_fasta_header.py', 'bin/merge_bam_files.py', 'bin/remove_masked_gene_models.py', 'bin/filter_fastq_by_N_content.py', 'bin/uniref_to_sqlite3.py', 'bin/uniprot_sprot_to_sqlite3.py', 'bin/reverse_misordered_cds_coords.py', 'bin/update_selected_column9_values.py', 'bin/convert_gff3_to_gene_association_format.py', 'bin/make_go_slim.py', 'bin/join_columnar_files.py', 'bin/split_interleaved_sequence_file.py', 'bin/merge_masked_fasta_files.py', 'bin/hmmlib_to_sqlite3.py', 'bin/fasta_size_distribution_plot.py', 'bin/report_gff3_statistics.py', 'bin/reformat_fasta_residue_lengths.py', 'bin/convert_cufflinks_gtf_to_gff3.py', 'bin/list_biocode.py', 'bin/fasta_simple_stats.py', 'bin/fastq_simple_stats.py', 'bin/convert_prodigal_to_gff3.py', 'bin/convert_scipio_gff_to_gff3.py', 'bin/filter_gff3_by_id_list.py', 'bin/reorient_sequences_by_id.py', 'bin/convert_fastq_to_fasta.py', 'bin/create_rsem_html_table.py', 'bin/convert_glimmerHMM_gff_to_gff3.py', 'bin/convert_genbank_to_gff3.py', 'bin/replace_homopolymeric_repeats_with_Ns.py', 'bin/split_fasta_into_even_files.py', 'bin/get_mpilup_from_id_list.py', 'bin/convert_gff_to_ncbi_gff3.py', 'bin/create_taxonomic_profile_from_blast.py', 'bin/convert_fasta_contigs_to_gff3.py', 'bin/merge_fasta_files_and_uniquify_ids.py', 'bin/merge_predicted_gff3.py', 'bin/filter_fasta_by_header_regex.py', 'bin/convert_pasa_gff_to_models.py', 'bin/extract_fasta_regions.py', 'bin/set_source_column.py', 'bin/tigrfam_info_to_sqlite3.py', 'bin/add_gff3_locus_tags.py', 'bin/fasta_base_content.py', 'bin/subsample_fasta.py', 'bin/convert_gff3_to_bed.py', 'bin/compare_gene_structures.py', 'bin/validate_fasta.py', 'bin/randomly_subsample_fastq.py', 'bin/append_to_fastq_read_header.py', 'bin/convert_aat_btab_to_gff3.py', 'bin/check_for_embedded_fasta_headers.py', 'bin/convert_htab_to_bed.py', 'bin/correct_gff3_CDS_phase_column.py', 'bin/report_coverage_gaps.py', 'bin/detect_inverted_repeats.py', 'bin/convert_cegma_gff_to_gff3.py', 'bin/remove_duplicate_features.py', 'bin/remove_duplicate_sequences.py', 'bin/create_taxonomy_db.py', 'bin/calculate_query_coverage_by_blast.py', 'bin/report_or_replace_nonstandard_residues.py', 'bin/write_fasta_from_gff.py', 'bin/filter_uniref_by_repid.py', 'bin/check_gff_for_internal_stops.py', 'bin/report_basic_gff_model_agreement.py', 'bin/calculate_gene_coverage_from_assembly.py', 'bin/report_gff_intron_and_intergenic_stats.py', 'bin/extend_genes_to_stops.py', 'bin/report_go_slim_counts.py', 'bin/make_go_index.py', 'bin/split_molecules_on_gaps.py'],
-       url='http://github.com/jorvis/biocode',
-       version='0.10.0',
-       zip_safe=False)
---
diff --git a/recipes/biocode/meta.yaml b/recipes/biocode/meta.yaml
index 2d3c8dc8fe5d8..42ff93ce5a92a 100644
--- a/recipes/biocode/meta.yaml
+++ b/recipes/biocode/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "biocode" %}
-{% set version = "0.10.0" %}
+{% set version = "0.11.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,14 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: ab48e0ea92f52c7fe48c6c947d4d5aa43437f16cd42a804546c71ef0e5ba2265
-  patches: biocode.patch
+  sha256: 5c0df506d07e6b073b56da360bba4dad8e0b90e4ceb6f62009ae51c56a83b162
 
 build:
   noarch: python
   number: 0
   script: "{{ PYTHON }} -m pip install . --no-deps -vv"
-  
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 requirements:
   host:
     - pip
diff --git a/recipes/biocommons.seqrepo/meta.yaml b/recipes/biocommons.seqrepo/meta.yaml
index af439c7613fe4..0009a20f469c5 100644
--- a/recipes/biocommons.seqrepo/meta.yaml
+++ b/recipes/biocommons.seqrepo/meta.yaml
@@ -1,6 +1,5 @@
 {% set name = "biocommons.seqrepo" %}
-{% set version = "0.6.5" %}
-
+{% set version = "0.6.9" %}
 
 package:
   name: {{ name|lower }}
@@ -8,28 +7,29 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/biocommons.seqrepo-{{ version }}.tar.gz
-  sha256: af9d1120fdef58025f1f8da02b0d184bb4a5a8a9299433f6020998d45992b29d
+  sha256: b08d616c6ab5c4bc8e1ef5e09e94c5c274c6da41f75a435323eddc716c9b5575
 
 build:
   number: 0
   noarch: python
   entry_points:
     - seqrepo = biocommons.seqrepo.cli:main
-  script: {{ PYTHON }} -m pip install . -vv --no-deps
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  run_exports:
+    - {{ pin_subpackage('biocommons.seqrepo', max_pin="x.x") }}
 
 requirements:
   host:
     - pip
-    - python >=3.6
+    - python >=3.9
     - pytest-runner
-    - cython
     - setuptools-scm
-    - wheel
   run:
     - bioutils >0.4
     - coloredlogs
+    - ipython
     - pysam
-    - python >=3.6
+    - python >=3.9
     - requests
     - requests-html
     - six
@@ -43,12 +43,11 @@ test:
   commands:
     #- pip check #requests-html 0.10.0 requires bs4, which is not installed
     - seqrepo --help
-  requires:
-    - pip
 
 about:
   home: https://github.com/biocommons/biocommons.seqrepo
   license: Apache-2.0
+  license_family: APACHE
   license_file: LICENSE
   summary: Python package for writing and reading a local collection of biological sequences.
 
diff --git a/recipes/bioconda-repodata-patches/.gitignore b/recipes/bioconda-repodata-patches/.gitignore
index 6934129b9f64e..03e52d30471fb 100644
--- a/recipes/bioconda-repodata-patches/.gitignore
+++ b/recipes/bioconda-repodata-patches/.gitignore
@@ -1,2 +1,3 @@
 __pycache__
 cache
+patches/*/patch_instructions.json
diff --git a/recipes/bioconda-repodata-patches/gen_patch_json.py b/recipes/bioconda-repodata-patches/gen_patch_json.py
index 6ae81e68a86c2..cf04659f9a5d9 100755
--- a/recipes/bioconda-repodata-patches/gen_patch_json.py
+++ b/recipes/bioconda-repodata-patches/gen_patch_json.py
@@ -165,11 +165,17 @@ def _gen_new_index(repodata, subdir):
         if record_name.startswith('samtools') and record['subdir']=='linux-64' and not has_dep(record, "openssl") and not has_dep(record, "htslib"):
             deps.append('openssl >=1.1.0,<=1.1.1')
 
+        # future HTSlib versions are binary compatible until they bump their soversion
+        if has_dep(record, 'htslib'):
+            # skip deps prior to 1.10, which was the first with soversion 3
+            # TODO adjust replacement (exclusive) upper bound with each new compatible HTSlib
+            _pin_looser(fn, record, 'htslib', min_lower_bound='1.10', upper_bound='1.21')
+
         # future libdeflate versions are compatible until they bump their soversion; relax dependencies accordingly
-        if record_name in ['htslib', 'staden_io_lib', 'fastp'] and has_dep(record, 'libdeflate'):
+        if record_name in ['htslib', 'staden_io_lib', 'fastp', 'pysam'] and has_dep(record, 'libdeflate'):
             # skip deps that allow anything <1.3, which contained an incompatible library filename
             # TODO adjust the replacement (exclusive) upper bound each time a compatible new libdeflate is released
-            _pin_looser(fn, record, 'libdeflate', min_lower_bound='1.3', upper_bound='1.19')
+            _pin_looser(fn, record, 'libdeflate', min_lower_bound='1.3', upper_bound='1.21')
 
         # nanosim <=3.1.0 requires scikit-learn<=0.22.1
         if record_name.startswith('nanosim') and has_dep(record, "scikit-learn") and version <= "3.1.0":
@@ -178,6 +184,13 @@ def _gen_new_index(repodata, subdir):
                     deps[i] += ",<=0.22.1"  # append an upper bound
                     break
 
+        # snakemake <8.1.2 requires pulp <2.8.0
+        if record_name == 'snakemake-minimal' and has_dep(record, "pulp") and version < "8.1.2":
+            for i, dep in enumerate(deps):
+                if dep.startswith("pulp") and has_no_upper_bound(dep):
+                    deps[i] = "pulp >=2.0,<2.8.0"
+
+
     return index
 
 
diff --git a/recipes/bioconda-repodata-patches/meta.yaml b/recipes/bioconda-repodata-patches/meta.yaml
index 7621cdf702c22..f269b23ddd758 100644
--- a/recipes/bioconda-repodata-patches/meta.yaml
+++ b/recipes/bioconda-repodata-patches/meta.yaml
@@ -1,13 +1,15 @@
 package:
   name: bioconda-repodata-patches
-  version: 20230506  # ensure that this is the "current" date, and always higher than the latest version in master
+  version: 20240525  # ensure that this is the "current" date, and always higher than the latest version in master
 
 source:
   path: .
 
 build:
   noarch: generic
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("bioconda-repodata-patches", max_pin=None) }}
 
 requirements:
   build:
diff --git a/recipes/bioconda-repodata-patches/patches/linux-64/patch_instructions.json b/recipes/bioconda-repodata-patches/patches/linux-64/patch_instructions.json
deleted file mode 100644
index 3e83a10d292c2..0000000000000
--- a/recipes/bioconda-repodata-patches/patches/linux-64/patch_instructions.json
+++ /dev/null
@@ -1,21693 +0,0 @@
-{
-  "packages": {
-    "aria2-1.23.0-0.tar.bz2": {
-      "depends": [
-        "c-ares",
-        "libgcc",
-        "libssh2",
-        "libxml2",
-        "openssl >=1.1.0,<=1.1.1",
-        "sqlite",
-        "zlib"
-      ]
-    },
-    "aria2-1.23.0-1.tar.bz2": {
-      "depends": [
-        "c-ares",
-        "libgcc",
-        "libssh2",
-        "libxml2",
-        "openssl >=1.1.0,<=1.1.1",
-        "sqlite",
-        "zlib 1.2.11*"
-      ]
-    },
-    "aria2-1.34.0-0.tar.bz2": {
-      "depends": [
-        "c-ares",
-        "libgcc",
-        "libssh2",
-        "libxml2",
-        "openssl >=1.1.0,<=1.1.1",
-        "sqlite",
-        "zlib 1.2.11*"
-      ]
-    },
-    "bamhash-1.0-0.tar.bz2": {
-      "depends": [
-        "libgcc",
-        "openssl >=1.1.0,<=1.1.1",
-        "zlib"
-      ]
-    },
-    "bamhash-1.0-1.tar.bz2": {
-      "depends": [
-        "libgcc",
-        "openssl >=1.1.0,<=1.1.1",
-        "zlib 1.2.11*"
-      ]
-    },
-    "bamhash-1.1-0.tar.bz2": {
-      "depends": [
-        "libgcc",
-        "openssl >=1.1.0,<=1.1.1",
-        "zlib"
-      ]
-    },
-    "bamhash-1.1-1.tar.bz2": {
-      "depends": [
-        "libgcc",
-        "openssl >=1.1.0,<=1.1.1",
-        "zlib 1.2.11*"
-      ]
-    },
-    "bcbio-nextgen-0.9.5-py27_1.tar.bz2": {
-      "depends": [
-        "arrow",
-        "azure",
-        "bioblend",
-        "biopython",
-        "boto",
-        "click",
-        "cython",
-        "cyvcf2",
-        "fabric",
-        "fadapa",
-        "gffutils",
-        "ipyparallel",
-        "ipython-cluster-helper",
-        "joblib",
-        "logbook",
-        "lxml",
-        "matplotlib",
-        "msgpack-python",
-        "nose",
-        "numpy",
-        "openpyxl",
-        "openssl >=1.1.0,<=1.1.1",
-        "pandas",
-        "path.py",
-        "patsy",
-        "pip",
-        "progressbar",
-        "psutil",
-        "pybedtools",
-        "pycrypto",
-        "pysam",
-        "python 2.7*",
-        "python-dateutil",
-        "pyvcf",
-        "pyyaml",
-        "pyzmq",
-        "reportlab",
-        "requests",
-        "scikit-learn",
-        "scipy",
-        "seaborn",
-        "seqcluster",
-        "sh",
-        "sqlalchemy",
-        "statsmodels",
-        "tabulate",
-        "toolz",
-        "tornado"
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-      "depends": [
-        "libgcc",
-        "libpng",
-        "libuuid",
-        "mysql-connector-c",
-        "openssl >=1.1.0,<=1.1.1",
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-    "ucsc-xmltosql-357-1.tar.bz2": {
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-    }
-  },
-  "patch_instructions_version": 1,
-  "remove": [],
-  "revoke": []
-}
\ No newline at end of file
diff --git a/recipes/bioconda-repodata-patches/patches/noarch/patch_instructions.json b/recipes/bioconda-repodata-patches/patches/noarch/patch_instructions.json
deleted file mode 100644
index 1f78f2f2d660e..0000000000000
--- a/recipes/bioconda-repodata-patches/patches/noarch/patch_instructions.json
+++ /dev/null
@@ -1,104187 +0,0 @@
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-      ]
-    },
-    "smeg-1.1.5-hdfd78af_2.tar.bz2": {
-      "depends": [
-        "bamtools",
-        "bedtools",
-        "blast",
-        "bowtie2",
-        "libgenome",
-        "mauve",
-        "openssl >=1.1.0,<=1.1.1",
-        "parallel",
-        "prokka",
-        "r-ape",
-        "r-data.table",
-        "r-dplyr",
-        "r-dynamictreecut",
-        "r-getopt",
-        "r-ggplot2",
-        "r-gplots",
-        "r-gsubfn",
-        "r-seqinr",
-        "readline >=6.2",
-        "roary",
-        "samtools"
-      ]
-    },
-    "star-fusion-1.11.1-hdfd78af_0.tar.bz2": {
-      "depends": [
-        "bbmap",
-        "blast",
-        "bzip2",
-        "gmap",
-        "htslib",
-        "igv-reports",
-        "openssl >=1.1.0,<=1.1.1",
-        "perl",
-        "perl-carp",
-        "perl-carp-assert",
-        "perl-db-file",
-        "perl-io-gzip",
-        "perl-json-xs",
-        "perl-set-intervaltree",
-        "perl-uri",
-        "python",
-        "samtools <1.10",
-        "star 2.7.8a",
-        "trinity <2.9"
-      ]
-    },
-    "star-fusion-1.12.0-hdfd78af_0.tar.bz2": {
-      "depends": [
-        "bbmap",
-        "blast",
-        "bzip2",
-        "gmap",
-        "htslib",
-        "igv-reports",
-        "openssl >=1.1.0,<=1.1.1",
-        "perl",
-        "perl-carp",
-        "perl-carp-assert",
-        "perl-db-file",
-        "perl-io-gzip",
-        "perl-json-xs",
-        "perl-set-intervaltree",
-        "perl-uri",
-        "python",
-        "samtools <1.10",
-        "star 2.7.8a",
-        "trinity <2.9"
-      ]
-    }
-  },
-  "patch_instructions_version": 1,
-  "remove": [],
-  "revoke": []
-}
\ No newline at end of file
diff --git a/recipes/bioconda-repodata-patches/patches/osx-64/patch_instructions.json b/recipes/bioconda-repodata-patches/patches/osx-64/patch_instructions.json
deleted file mode 100644
index dc1cbdcdd7db1..0000000000000
--- a/recipes/bioconda-repodata-patches/patches/osx-64/patch_instructions.json
+++ /dev/null
@@ -1,12421 +0,0 @@
-{
-  "packages": {
-    "bamhash-1.0-0.tar.bz2": {
-      "depends": [
-        "libgcc",
-        "openssl >=1.1.0,<=1.1.1",
-        "zlib"
-      ]
-    },
-    "bamhash-1.0-1.tar.bz2": {
-      "depends": [
-        "libgcc",
-        "openssl >=1.1.0,<=1.1.1",
-        "zlib 1.2.11*"
-      ]
-    },
-    "bamhash-1.1-0.tar.bz2": {
-      "depends": [
-        "libgcc",
-        "openssl >=1.1.0,<=1.1.1",
-        "zlib"
-      ]
-    },
-    "bamhash-1.1-1.tar.bz2": {
-      "depends": [
-        "libgcc",
-        "openssl >=1.1.0,<=1.1.1",
-        "zlib 1.2.11*"
-      ]
-    },
-    "bcbio-nextgen-0.9.5-py27_1.tar.bz2": {
-      "depends": [
-        "arrow",
-        "azure",
-        "bioblend",
-        "biopython",
-        "boto",
-        "click",
-        "cython",
-        "cyvcf2",
-        "fabric",
-        "fadapa",
-        "gffutils",
-        "ipyparallel",
-        "ipython-cluster-helper",
-        "joblib",
-        "logbook",
-        "lxml",
-        "matplotlib",
-        "msgpack-python",
-        "nose",
-        "numpy",
-        "openpyxl",
-        "openssl >=1.1.0,<=1.1.1",
-        "pandas",
-        "path.py",
-        "patsy",
-        "pip",
-        "progressbar",
-        "psutil",
-        "pybedtools",
-        "pycrypto",
-        "pysam",
-        "python 2.7*",
-        "python-dateutil",
-        "pyvcf",
-        "pyyaml",
-        "pyzmq",
-        "reportlab",
-        "requests",
-        "scikit-learn",
-        "scipy",
-        "seaborn",
-        "seqcluster",
-        "sh",
-        "sqlalchemy",
-        "statsmodels",
-        "tabulate",
-        "toolz",
-        "tornado"
-      ]
-    },
-    "bcbio-nextgen-0.9.6-py27_0.tar.bz2": {
-      "depends": [
-        "arrow",
-        "azure",
-        "bioblend",
-        "biopython",
-        "boto",
-        "click",
-        "cython",
-        "cyvcf2",
-        "fabric",
-        "fadapa",
-        "gffutils",
-        "ipyparallel",
-        "ipython-cluster-helper",
-        "ipywidgets",
-        "joblib",
-        "logbook",
-        "lxml",
-        "matplotlib",
-        "msgpack-python",
-        "nose",
-        "numpy",
-        "openpyxl",
-        "openssl >=1.1.0,<=1.1.1",
-        "pandas",
-        "path.py",
-        "patsy",
-        "pip",
-        "progressbar",
-        "psutil",
-        "pybedtools",
-        "pycrypto",
-        "pysam",
-        "python 2.7*",
-        "python-dateutil",
-        "pyvcf",
-        "pyyaml",
-        "pyzmq",
-        "reportlab",
-        "requests",
-        "scikit-learn",
-        "scipy",
-        "seaborn",
-        "seqcluster",
-        "sh",
-        "sqlalchemy",
-        "statsmodels",
-        "tabulate",
-        "toolz",
-        "tornado"
-      ]
-    },
-    "bcbio-nextgen-0.9.6a-py27_0.tar.bz2": {
-      "depends": [
-        "arrow",
-        "azure",
-        "bioblend",
-        "biopython",
-        "boto",
-        "click",
-        "cython",
-        "cyvcf2",
-        "fabric",
-        "fadapa",
-        "gffutils",
-        "ipyparallel",
-        "ipython-cluster-helper",
-        "joblib",
-        "logbook",
-        "lxml",
-        "matplotlib",
-        "msgpack-python",
-        "nose",
-        "numpy",
-        "openpyxl",
-        "openssl >=1.1.0,<=1.1.1",
-        "pandas",
-        "path.py",
-        "patsy",
-        "pip",
-        "progressbar",
-        "psutil",
-        "pybedtools",
-        "pycrypto",
-        "pysam",
-        "python 2.7*",
-        "python-dateutil",
-        "pyvcf",
-        "pyyaml",
-        "pyzmq",
-        "reportlab",
-        "requests",
-        "scikit-learn",
-        "scipy",
-        "seaborn",
-        "seqcluster",
-        "sh",
-        "sqlalchemy",
-        "statsmodels",
-        "tabulate",
-        "toolz",
-        "tornado"
-      ]
-    },
-    "bcbio-nextgen-0.9.6a-py27_1.tar.bz2": {
-      "depends": [
-        "arrow",
-        "azure",
-        "bioblend",
-        "biopython",
-        "boto",
-        "click",
-        "cython",
-        "cyvcf2",
-        "fabric",
-        "fadapa",
-        "gffutils",
-        "ipyparallel",
-        "ipython-cluster-helper",
-        "joblib",
-        "logbook",
-        "lxml",
-        "matplotlib",
-        "msgpack-python",
-        "nose",
-        "numpy",
-        "openpyxl",
-        "openssl >=1.1.0,<=1.1.1",
-        "pandas",
-        "path.py",
-        "patsy",
-        "pip",
-        "progressbar",
-        "psutil",
-        "pybedtools",
-        "pycrypto",
-        "pysam",
-        "python 2.7*",
-        "python-dateutil",
-        "pyvcf",
-        "pyyaml",
-        "pyzmq",
-        "reportlab",
-        "requests",
-        "scikit-learn",
-        "scipy",
-        "seaborn",
-        "seqcluster",
-        "sh",
-        "sqlalchemy",
-        "statsmodels",
-        "tabulate",
-        "toolz",
-        "tornado"
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-    },
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-        "cyvcf2",
-        "fabric",
-        "fadapa",
-        "gffutils",
-        "ipyparallel",
-        "ipython-cluster-helper",
-        "joblib",
-        "logbook",
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-        "matplotlib",
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-        "nose",
-        "numpy",
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-        "openssl >=1.1.0,<=1.1.1",
-        "pandas",
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-        "pybedtools",
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-        "python 2.7*",
-        "python-dateutil",
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-        "pyyaml",
-        "pyzmq",
-        "reportlab",
-        "requests",
-        "scikit-learn",
-        "scipy",
-        "seaborn",
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-        "toolz",
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-        "seqcluster",
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-        "reportlab",
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-        "seaborn",
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-  },
-  "patch_instructions_version": 1,
-  "remove": [],
-  "revoke": []
-}
\ No newline at end of file
diff --git a/recipes/bioconda-utils/meta.yaml b/recipes/bioconda-utils/meta.yaml
index 86ec8acfeeeba..d81622d3d8043 100644
--- a/recipes/bioconda-utils/meta.yaml
+++ b/recipes/bioconda-utils/meta.yaml
@@ -1,8 +1,9 @@
-{% set version = "2.3.4" %}
-{% set sha256 = "b60f9d59c2d3749d69e5b8237bf44a537c3aa08ea2de230aace585b84d1862c8" %}
+{% set name = "bioconda-utils" %}
+{% set version = "2.15.1" %}
+{% set sha256 = "729f00c8ca5b3c7f469215edfc8122aa8617111b3151ed359081cc6a4b4f1a24" %}
 
 package:
-  name: bioconda-utils
+  name: {{ name }}
   version: {{ version }}
 
 source:
@@ -12,53 +13,62 @@ source:
 build:
   noarch: python
   number: 0
-  script: python -m pip install --no-deps --ignore-installed .
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation --no-cache-dir . -vvv
   entry_points:
     - bioconda-utils = bioconda_utils.cli:main
+  run_exports:
+    - {{ pin_subpackage('bioconda-utils', max_pin="x") }}
 
 requirements:
   host:
-    - python >=3.7
+    - python
     - pip
   run:
-    - python >=3.7
-    - conda 23.3.*
-    - boa 0.15.*
-    - conda-build 3.24.*
-    - conda-verify 3.1.*
-    - argh 0.26.*
-    - colorlog 4.8.*
-    - yaspin 2.0.*
-    - ruamel_yaml 0.15.*
-    - pyaml 17.12.*
-    - networkx 2.*
-    - pandas 1.4.*
-    - numpy 1.19.*
-    - libblas * *openblas
-    - boltons 23.*
-    - jsonschema 3.2.*
-    - pyopenssl >=22.1
     - conda-forge-pinning 2023.05.06.13.08.41
-    - anaconda-client 1.6.*
+    - python 3.10.*
+    - conda 24.3.*
+    - conda-libmamba-solver 24.1.*
+    - conda-build 24.3.*
+    - conda-index 0.4.*
+    - conda-package-streaming 0.9.*
+    - mamba 1.5.*
+    - boa 0.17.*
+    - argh 0.31.*
+    - colorlog 6.*
+    - tqdm 4.66.*
+    - yaspin 2.*
+    - ruamel.yaml 0.18.*
+    - pyaml 23.12.*
+    - networkx 3.3.*
+    - pandas 2.2.*
+    - libblas * *openblas
+    - boltons 24.0.*
+    - jsonschema 4.21.*
+    - jinja2 3.1.*
+    - anaconda-client 1.12.*
+    - galaxy-tool-util 24.*
     - involucro 1.1.*
-    - skopeo 1.11.*
+    - skopeo 1.15.*
+    - findutils
     - git 2.*
-    - regex 2022.7.9
-    - aiohttp 3.8.*
+    - regex 2023.*
+    - aiohttp 3.9.*
     - aiohttp-jinja2
     - aiohttp-session
     - aiohttp-security
-    - aiofiles 0.8.*
-    - aioftp 0.12.*
-    - backoff 1.6.*
-    - cachetools 3.0.*
-    - gitpython >=3.0.8,3.0.*
-    - gidgethub 3.0.*
+    - aiofiles 23.*
+    - aioftp 0.22.*
+    - backoff 2.2.*
+    - cachetools 5.3.*
+    - gitpython 3.1.*
+    - gidgethub 5.*
     - pyjwt >=2.4.0
-    - beautifulsoup4 4.8.*
-    - galaxy-lib >=18.9.1
-    - jinja2 >2.10.1,<3
-    - markupsafe <2.1
+    - beautifulsoup4 4.*
+    - requests 2.31.*
+    - pygithub
+    - diskcache 5.*
+    - platformdirs 4.*
+    - tabulate 0.9.*
     - sphinx >=4.1
     - celery
     - sphinx-autodoc-typehints
@@ -66,11 +76,6 @@ requirements:
     - docutils
     - markdown
     - graphviz
-    - requests 2.22.*
-    - pygithub 1.*
-    - diskcache 5.*
-    - appdirs 1.*
-    - tabulate 0.9.*
 
 test:
   imports:
@@ -82,14 +87,16 @@ test:
     - >
       CONDA_AGGRESSIVE_UPDATE_PACKAGES=
       CONDA_AUTO_UPDATE_CONDA=0
-      "${PREFIX}/bin/conda" install --prefix="${PREFIX}" --dry-run --satisfied-skip-solve
+      "${PREFIX}/bin/mamba" install --prefix="${PREFIX}" --dry-run --satisfied-skip-solve
       --file="$( python -c
       'from os.path import dirname, join; import bioconda_utils; print(join(dirname(bioconda_utils.__file__), "bioconda_utils-requirements.txt"))'
-      )" 2>&1 | grep -qF 'All requested packages already installed.'
+      )" 2>&1 | grep -qF 'All requested packages already installed'
 
 about:
-  home: http://bioconda.github.io/build-system.html
+  home: "https://bioconda.github.io/contributor/build-system.html"
   license: MIT
   license_family: MIT
-  summary: Utilities for building and managing bioconda recipes.
-  dev_url: https://github.com/bioconda/bioconda-utils
+  license_file: "LICENSE.md"
+  summary: "Utilities for building and managing bioconda recipes."
+  dev_url: "https://github.com/bioconda/bioconda-utils"
+  doc_url: "https://bioconda.github.io/contributor/guidelines.html"
diff --git a/recipes/bioconductor-a4/meta.yaml b/recipes/bioconductor-a4/meta.yaml
index 5b8e67556e076..5ce9102925ae3 100644
--- a/recipes/bioconductor-a4/meta.yaml
+++ b/recipes/bioconductor-a4/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "a4" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 5d945210d12e19d845e8949ef53b9d43
+  md5: 54c9c4300db0c04edd9b531bb0f121a0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-a4", max_pin="x.x") }}'
   noarch: generic
 # Suggests: MLP, nlcv, ALL, Cairo, Rgraphviz, GOstats
 requirements:
   host:
-    - 'bioconductor-a4base >=1.48.0,<1.49.0'
-    - 'bioconductor-a4classif >=1.48.0,<1.49.0'
-    - 'bioconductor-a4core >=1.48.0,<1.49.0'
-    - 'bioconductor-a4preproc >=1.48.0,<1.49.0'
-    - 'bioconductor-a4reporting >=1.48.0,<1.49.0'
+    - 'bioconductor-a4base >=1.50.0,<1.51.0'
+    - 'bioconductor-a4classif >=1.50.0,<1.51.0'
+    - 'bioconductor-a4core >=1.50.0,<1.51.0'
+    - 'bioconductor-a4preproc >=1.50.0,<1.51.0'
+    - 'bioconductor-a4reporting >=1.50.0,<1.51.0'
     - r-base
   run:
-    - 'bioconductor-a4base >=1.48.0,<1.49.0'
-    - 'bioconductor-a4classif >=1.48.0,<1.49.0'
-    - 'bioconductor-a4core >=1.48.0,<1.49.0'
-    - 'bioconductor-a4preproc >=1.48.0,<1.49.0'
-    - 'bioconductor-a4reporting >=1.48.0,<1.49.0'
+    - 'bioconductor-a4base >=1.50.0,<1.51.0'
+    - 'bioconductor-a4classif >=1.50.0,<1.51.0'
+    - 'bioconductor-a4core >=1.50.0,<1.51.0'
+    - 'bioconductor-a4preproc >=1.50.0,<1.51.0'
+    - 'bioconductor-a4reporting >=1.50.0,<1.51.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-a4base/meta.yaml b/recipes/bioconductor-a4base/meta.yaml
index c3bc1ab6eee23..8d52ef862f80d 100644
--- a/recipes/bioconductor-a4base/meta.yaml
+++ b/recipes/bioconductor-a4base/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "a4Base" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b4727840ebfa0c2fdb548b54320e4e39
+  md5: 927ee5147653a1ee4df6380f52ad055a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-a4base", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Cairo, ALL, hgu95av2.db, nlcv
 requirements:
   host:
-    - 'bioconductor-a4core >=1.48.0,<1.49.0'
-    - 'bioconductor-a4preproc >=1.48.0,<1.49.0'
-    - 'bioconductor-annaffy >=1.72.0,<1.73.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-a4core >=1.50.0,<1.51.0'
+    - 'bioconductor-a4preproc >=1.50.0,<1.51.0'
+    - 'bioconductor-annaffy >=1.74.0,<1.75.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
     - r-glmnet
     - r-gplots
     - r-mpm
   run:
-    - 'bioconductor-a4core >=1.48.0,<1.49.0'
-    - 'bioconductor-a4preproc >=1.48.0,<1.49.0'
-    - 'bioconductor-annaffy >=1.72.0,<1.73.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-a4core >=1.50.0,<1.51.0'
+    - 'bioconductor-a4preproc >=1.50.0,<1.51.0'
+    - 'bioconductor-annaffy >=1.74.0,<1.75.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
     - r-glmnet
     - r-gplots
diff --git a/recipes/bioconductor-a4classif/meta.yaml b/recipes/bioconductor-a4classif/meta.yaml
index 7690f421f98f1..c519e2749143a 100644
--- a/recipes/bioconductor-a4classif/meta.yaml
+++ b/recipes/bioconductor-a4classif/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "a4Classif" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 44dc4f5d280303effaedb954307fb336
+  md5: 2af82160c9909dd6fdec620de5710cfa
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-a4classif", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ALL, hgu95av2.db, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-a4core >=1.48.0,<1.49.0'
-    - 'bioconductor-a4preproc >=1.48.0,<1.49.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-a4core >=1.50.0,<1.51.0'
+    - 'bioconductor-a4preproc >=1.50.0,<1.51.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-glmnet
     - r-pamr
     - r-rocr
     - r-varselrf
   run:
-    - 'bioconductor-a4core >=1.48.0,<1.49.0'
-    - 'bioconductor-a4preproc >=1.48.0,<1.49.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-a4core >=1.50.0,<1.51.0'
+    - 'bioconductor-a4preproc >=1.50.0,<1.51.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-glmnet
     - r-pamr
diff --git a/recipes/bioconductor-a4core/meta.yaml b/recipes/bioconductor-a4core/meta.yaml
index b0135089b2ee1..581eed71adc05 100644
--- a/recipes/bioconductor-a4core/meta.yaml
+++ b/recipes/bioconductor-a4core/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "a4Core" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5f0cb8b9e0ac23f1cd176b17c4ef84aa
+  md5: fdca418afe3a74d9114d8d28afca2037
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-a4core", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-glmnet
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-glmnet
 test:
diff --git a/recipes/bioconductor-a4preproc/meta.yaml b/recipes/bioconductor-a4preproc/meta.yaml
index 3efdd56e61c2f..06b428d18d822 100644
--- a/recipes/bioconductor-a4preproc/meta.yaml
+++ b/recipes/bioconductor-a4preproc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "a4Preproc" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 268368ed5be41d5484b7b5967e2fa716
+  md5: 5d9eea3d9957fc99156115052398f0cb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-a4preproc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ALL, hgu95av2.db, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-a4reporting/meta.yaml b/recipes/bioconductor-a4reporting/meta.yaml
index 6c2d318ba1aa4..2da455e03ce4c 100644
--- a/recipes/bioconductor-a4reporting/meta.yaml
+++ b/recipes/bioconductor-a4reporting/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "a4Reporting" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: aace068e89a5238b844b694e81ef185b
+  md5: 3ba7f3c5606c2f898d84314ba63208fa
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-a4reporting", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
diff --git a/recipes/bioconductor-abarray/meta.yaml b/recipes/bioconductor-abarray/meta.yaml
index cd518fd3629fd..7e528a9709f81 100644
--- a/recipes/bioconductor-abarray/meta.yaml
+++ b/recipes/bioconductor-abarray/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.68.0" %}
+{% set version = "1.70.0" %}
 {% set name = "ABarray" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c2ae9c221317ee561584dec59cd0ed37
+  md5: 59e686f9daf6990fbe6e1594b8676197
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-abarray", max_pin="x.x") }}'
   noarch: generic
 # Suggests: limma, LPE
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-abseqr/meta.yaml b/recipes/bioconductor-abseqr/meta.yaml
index 48cccf87678f5..da20a9a3cd15d 100644
--- a/recipes/bioconductor-abseqr/meta.yaml
+++ b/recipes/bioconductor-abseqr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "abseqR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: aef896b0c639d90e59a64148f07587c5
+  md5: f35214f635511b611297a3730386b205
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-abseqr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat
 # SystemRequirements: pandoc (>= 1.19.2.1)
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
     - r-base
     - r-circlize
     - r-flexdashboard
@@ -43,8 +44,8 @@ requirements:
     - r-venndiagram
     - 'pandoc >=1.19.2.1'
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
     - r-base
     - r-circlize
     - r-flexdashboard
diff --git a/recipes/bioconductor-absseq/meta.yaml b/recipes/bioconductor-absseq/meta.yaml
index bac5358be9274..7b51b8e054377 100644
--- a/recipes/bioconductor-absseq/meta.yaml
+++ b/recipes/bioconductor-absseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.54.0" %}
+{% set version = "1.56.0" %}
 {% set name = "ABSSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e0e0790ae5c6424bf69ba5b2aa334204
+  md5: d170bf2f9a37dcdffd2d91e233ce5132
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-absseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: edgeR
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-locfit
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-locfit
 test:
diff --git a/recipes/bioconductor-acde/meta.yaml b/recipes/bioconductor-acde/meta.yaml
index 8a7985595713d..2d4644f22d888 100644
--- a/recipes/bioconductor-acde/meta.yaml
+++ b/recipes/bioconductor-acde/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "acde" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 7902aed44029d52dacbac22cba66509c
+  md5: 9a324caddfceb2aa977e0fc9e7e41615
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-acde", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, RUnit
 requirements:
diff --git a/recipes/bioconductor-ace/meta.yaml b/recipes/bioconductor-ace/meta.yaml
index bb78545967250..9befebeb13c7e 100644
--- a/recipes/bioconductor-ace/meta.yaml
+++ b/recipes/bioconductor-ace/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "ACE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0403b6c89b9bcf3502feed89309e5922
+  md5: dd177150c01a5547ca8edabf82ef85d6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ace", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-qdnaseq >=1.36.0,<1.37.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-qdnaseq >=1.38.0,<1.39.0'
     - r-base
     - r-ggplot2
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-qdnaseq >=1.36.0,<1.37.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-qdnaseq >=1.38.0,<1.39.0'
     - r-base
     - r-ggplot2
 test:
diff --git a/recipes/bioconductor-acgh/meta.yaml b/recipes/bioconductor-acgh/meta.yaml
index c0be97797e3a6..480a44e57a521 100644
--- a/recipes/bioconductor-acgh/meta.yaml
+++ b/recipes/bioconductor-acgh/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.78.0" %}
+{% set version = "1.80.0" %}
 {% set name = "aCGH" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b4e5a21eaeab73202b57967602d0d19e
+  md5: 137af76dc5756a83094da18eb0bededa
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-acgh", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
     - r-cluster
     - r-survival
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
     - r-cluster
     - r-survival
@@ -41,11 +42,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-2
+  license: GPL-2.0-only
   summary: 'Classes and functions for Array Comparative Genomic Hybridization data'
   description: 'Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:acgh
     - doi:10.1093/bioinformatics/bti677
diff --git a/recipes/bioconductor-acme/meta.yaml b/recipes/bioconductor-acme/meta.yaml
index 701e468e22498..47fd7e89692ed 100644
--- a/recipes/bioconductor-acme/meta.yaml
+++ b/recipes/bioconductor-acme/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.56.0" %}
+{% set version = "2.58.0" %}
 {% set name = "ACME" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ccefadaea2ecb53dcede052ddb6846b2
+  md5: 6668a82e0a26ac03c9697e2cf22eb75e
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-acme", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
   build:
     - {{ compiler('c') }}
@@ -36,11 +37,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'GPL (>= 2)'
+  license: 'GPL-3-only'
   summary: 'Algorithms for Calculating Microarray Enrichment (ACME)'
   description: 'ACME (Algorithms for Calculating Microarray Enrichment) is a set of tools for analysing tiling array ChIP/chip, DNAse hypersensitivity, or other experiments that result in regions of the genome showing "enrichment".  It does not rely on a specific array technology (although the array should be a "tiling" array), is very general (can be applied in experiments resulting in regions of enrichment), and is very insensitive to array noise or normalization methods.  It is also very fast and can be applied on whole-genome tiling array experiments quite easily with enough memory.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:acme
   parent_recipe:
diff --git a/recipes/bioconductor-adacgh2/meta.yaml b/recipes/bioconductor-adacgh2/meta.yaml
index 5b1d78c12bba2..1c71ce07f7657 100644
--- a/recipes/bioconductor-adacgh2/meta.yaml
+++ b/recipes/bioconductor-adacgh2/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.40.0" %}
+{% set version = "2.42.0" %}
 {% set name = "ADaCGH2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ef58db06870d692ea9b0d7a065d0542d
+  md5: 0ce28a95b156205f60eeda851b36c958
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-adacgh2", max_pin="x.x") }}'
 # Suggests: CGHregions, Cairo, limma
 requirements:
   host:
-    - 'bioconductor-acgh >=1.78.0,<1.79.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-glad >=2.64.0,<2.65.0'
-    - 'bioconductor-snapcgh >=1.70.0,<1.71.0'
-    - 'bioconductor-tilingarray >=1.78.0,<1.79.0'
+    - 'bioconductor-acgh >=1.80.0,<1.81.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-glad >=2.66.0,<2.67.0'
+    - 'bioconductor-snapcgh >=1.72.0,<1.73.0'
+    - 'bioconductor-tilingarray >=1.80.0,<1.81.0'
     - r-base
     - r-bit
     - r-cluster
@@ -33,11 +34,11 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-acgh >=1.78.0,<1.79.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-glad >=2.64.0,<2.65.0'
-    - 'bioconductor-snapcgh >=1.70.0,<1.71.0'
-    - 'bioconductor-tilingarray >=1.78.0,<1.79.0'
+    - 'bioconductor-acgh >=1.80.0,<1.81.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-glad >=2.66.0,<2.67.0'
+    - 'bioconductor-snapcgh >=1.72.0,<1.73.0'
+    - 'bioconductor-tilingarray >=1.80.0,<1.81.0'
     - r-base
     - r-bit
     - r-cluster
diff --git a/recipes/bioconductor-adam/meta.yaml b/recipes/bioconductor-adam/meta.yaml
index 15009172ba8e2..ecee8bcc2ce80 100644
--- a/recipes/bioconductor-adam/meta.yaml
+++ b/recipes/bioconductor-adam/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "ADAM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d93cb7a12ab64f41db64cacdef965abe
+  md5: 7f051085afca603520dbb5cb010e58fe
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-adam", max_pin="x.x") }}'
 # Suggests: testthat, rmarkdown, BiocStyle
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-dplyr >=0.7.6'
     - 'r-dt >=0.4'
@@ -34,9 +35,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-dplyr >=0.7.6'
     - 'r-dt >=0.4'
diff --git a/recipes/bioconductor-adamgui/meta.yaml b/recipes/bioconductor-adamgui/meta.yaml
index ebf62d0541668..d9cd81c8fabd7 100644
--- a/recipes/bioconductor-adamgui/meta.yaml
+++ b/recipes/bioconductor-adamgui/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "ADAMgui" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c733676eecd9e6fe3acf3918534ee220
+  md5: d6b76d93be7f193cd913f44f6ff41a64
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-adamgui", max_pin="x.x") }}'
   noarch: generic
 # Suggests: markdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-adam >=1.16.0,<1.17.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
+    - 'bioconductor-adam >=1.18.0,<1.19.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
     - r-base
     - 'r-colorramps >=2.3'
     - 'r-data.table >=1.11.4'
@@ -43,8 +44,8 @@ requirements:
     - r-testthat
     - 'r-varhandle >=2.0.3'
   run:
-    - 'bioconductor-adam >=1.16.0,<1.17.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
+    - 'bioconductor-adam >=1.18.0,<1.19.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
     - r-base
     - 'r-colorramps >=2.3'
     - 'r-data.table >=1.11.4'
diff --git a/recipes/bioconductor-adductdata/meta.yaml b/recipes/bioconductor-adductdata/meta.yaml
index 63ebe10e796a1..ad2a3978ce00b 100644
--- a/recipes/bioconductor-adductdata/meta.yaml
+++ b/recipes/bioconductor-adductdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "adductData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: abd834104d02465a0f32a64be9974c64
+  md5: bf0e3549ee672a31f32759f0535f360a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-adductdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr (>= 1.15.1), rmarkdown (>= 1.5)
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-adductdata/post-link.sh b/recipes/bioconductor-adductdata/post-link.sh
index 4f61cf8d1d91c..d3605c39b51d2 100644
--- a/recipes/bioconductor-adductdata/post-link.sh
+++ b/recipes/bioconductor-adductdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "adductdata-1.16.0"
+installBiocDataPackage.sh "adductdata-1.18.0"
diff --git a/recipes/bioconductor-adductomicsr/meta.yaml b/recipes/bioconductor-adductomicsr/meta.yaml
index 3e5bf8e9fdc27..0dae0b1138261 100644
--- a/recipes/bioconductor-adductomicsr/meta.yaml
+++ b/recipes/bioconductor-adductomicsr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "adductomicsR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ed852e0f573a83db85687be2f9fd6854
+  md5: 82e24a09ba891b76e9497a6725b96fe0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-adductomicsr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr (>= 1.15.1), rmarkdown (>= 1.5), Rdisop (>= 1.34.0), testthat
 requirements:
   host:
-    - 'bioconductor-adductdata >=1.16.0,<1.17.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
+    - 'bioconductor-adductdata >=1.18.0,<1.19.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
     - 'r-ade4 >=1.7.6'
     - r-base
     - 'r-bootstrap >=2017.2'
@@ -44,10 +45,10 @@ requirements:
     - 'r-smoother >=1.1'
     - 'r-zoo >=1.8'
   run:
-    - 'bioconductor-adductdata >=1.16.0,<1.17.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
+    - 'bioconductor-adductdata >=1.18.0,<1.19.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
     - 'r-ade4 >=1.7.6'
     - r-base
     - 'r-bootstrap >=2017.2'
diff --git a/recipes/bioconductor-adimpute/meta.yaml b/recipes/bioconductor-adimpute/meta.yaml
index bca3ef416071c..dc9e7cde8ce66 100644
--- a/recipes/bioconductor-adimpute/meta.yaml
+++ b/recipes/bioconductor-adimpute/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "ADImpute" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c7d4917d6ba8a14b93e6ccb52e93b677
+  md5: 488025707dc1ae48d36b1e936cd86e18
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-adimpute", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-checkmate
     - r-data.table
@@ -35,10 +36,10 @@ requirements:
     - r-rsvd
     - r-saver
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-checkmate
     - r-data.table
diff --git a/recipes/bioconductor-adme16cod.db/meta.yaml b/recipes/bioconductor-adme16cod.db/meta.yaml
index 6dd4d7e465201..e4dce7a0d51e4 100644
--- a/recipes/bioconductor-adme16cod.db/meta.yaml
+++ b/recipes/bioconductor-adme16cod.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.4.0" %}
 {% set name = "adme16cod.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 3902516a40a503302ef732143b2394b9
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-adme16cod.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-adsplit/meta.yaml b/recipes/bioconductor-adsplit/meta.yaml
index f3475e35dc258..63e85226e64ef 100644
--- a/recipes/bioconductor-adsplit/meta.yaml
+++ b/recipes/bioconductor-adsplit/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.70.0" %}
+{% set version = "1.72.0" %}
 {% set name = "adSplit" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c31606f8e4de1045362077ae9e7f0cc3
+  md5: 4d50affb50e6f6a11d8c4e379b6116d8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-adsplit", max_pin="x.x") }}'
 # Suggests: golubEsets (>= 1.0), vsn (>= 1.5.0), hu6800.db (>= 1.8.1)
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
     - 'r-cluster >=1.9.1'
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
     - 'r-cluster >=1.9.1'
   build:
diff --git a/recipes/bioconductor-adverscarial/build.sh b/recipes/bioconductor-adverscarial/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-adverscarial/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-adverscarial/meta.yaml b/recipes/bioconductor-adverscarial/meta.yaml
new file mode 100644
index 0000000000000..4a8c254b26e82
--- /dev/null
+++ b/recipes/bioconductor-adverscarial/meta.yaml
@@ -0,0 +1,43 @@
+{% set version = "1.0.0" %}
+{% set name = "adverSCarial" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 196840790cf7fd0a0cbfe6d1aeb60e07
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-adverscarial", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: knitr, RUnit, BiocGenerics, TENxPBMCData, CHETAH, stringr, LoomExperiment
+requirements:
+  host:
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - r-base
+    - r-gtools
+  run:
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - r-base
+    - r-gtools
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'MIT + file LICENSE'
+  summary: 'adverSCarial, generate and analyze the vulnerability of scRNA-seq classifiers to adversarial attacks'
+  description: 'adverSCarial is an R Package designed for generating and analyzing the vulnerability of scRNA-seq classifiers to adversarial attacks. The package is versatile and provides a format for integrating any type of classifier. It offers functions for studying and generating two types of attacks, single gene attack and max change attack. The single gene attack involves making a small modification to the input to alter the classification. The max change attack involves making a large modification to the input without changing its classification. The package provides a comprehensive solution for evaluating the robustness of scRNA-seq classifiers against adversarial attacks.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-affixcan/meta.yaml b/recipes/bioconductor-affixcan/meta.yaml
index e06e9f22978f5..239059a2abf23 100644
--- a/recipes/bioconductor-affixcan/meta.yaml
+++ b/recipes/bioconductor-affixcan/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "AffiXcan" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4372aaaf131ef8bced13fa847b0b09d0
+  md5: 0fdb85714a4ee94e3c04117e56d35724
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-affixcan", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-crayon
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-crayon
 test:
diff --git a/recipes/bioconductor-affxparser/meta.yaml b/recipes/bioconductor-affxparser/meta.yaml
index 874264d669dce..b14c8b9d06485 100644
--- a/recipes/bioconductor-affxparser/meta.yaml
+++ b/recipes/bioconductor-affxparser/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "affxparser" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 532d0815920747092ca64f439fc2677a
+  md5: 2b6b9373d749a0ccbf930f834df90b92
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-affxparser", max_pin="x.x") }}'
 # Suggests: R.oo (>= 1.22.0), R.utils (>= 2.7.0), AffymetrixDataTestFiles
 requirements:
   host:
@@ -39,6 +40,8 @@ about:
   description: 'Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR).  It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix'' Fusion SDK. Both ASCII- and binary-based files are supported.  Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL).  These files can be read either in full or in part.  For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/LGPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   parent_recipe:
     name: bioconductor-affxparser
     path: recipes/bioconductor-affxparser
diff --git a/recipes/bioconductor-affy/meta.yaml b/recipes/bioconductor-affy/meta.yaml
index b282b1628b862..d7bd0340a6b27 100644
--- a/recipes/bioconductor-affy/meta.yaml
+++ b/recipes/bioconductor-affy/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.78.0" %}
+{% set version = "1.80.0" %}
 {% set name = "affy" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,40 +11,33 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 1b3ca024b5fc6804d66023f11c058955
+  md5: 09376016b32f86f707ff9b8f8cb8a1a5
 build:
   number: 1
   rpaths:
     - lib/R/lib/
     - lib/
-# Suggests: tkWidgets (>= 1.19.0), affydata, widgetTools
+  run_exports: '{{ pin_subpackage("bioconductor-affy", max_pin="x.x") }}'
+# Suggests: tkWidgets (>= 1.19.0), affydata, widgetTools, hgu95av2cdf
 requirements:
   host:
-    - 'bioconductor-affyio >=1.70.0,<1.71.0'
-    - bioconductor-annotationdbi
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-affyio >=1.72.0,<1.73.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-biocmanager
-    - r-curl
-    - r-plogr
-    - r-rsqlite
     - libblas
     - liblapack
   run:
-    - 'bioconductor-affyio >=1.70.0,<1.71.0'
-    - bioconductor-annotationdbi
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-affyio >=1.72.0,<1.73.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-biocmanager
-    - r-curl
-    - r-plogr
-    - r-rsqlite
   build:
     - {{ compiler('c') }}
     - automake
@@ -54,11 +47,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'LGPL (>= 2.0)'
+  license: 'LGPL-3-only'
   summary: 'Methods for Affymetrix Oligonucleotide Arrays'
   description: 'The package contains functions for exploratory oligonucleotide array analysis. The dependence on tkWidgets only concerns few convenience functions. ''affy'' is fully functional without it.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/LGPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:affy
   parent_recipe:
diff --git a/recipes/bioconductor-affycomp/meta.yaml b/recipes/bioconductor-affycomp/meta.yaml
index 01d92610a5ec8..8637840fed6df 100644
--- a/recipes/bioconductor-affycomp/meta.yaml
+++ b/recipes/bioconductor-affycomp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.76.0" %}
+{% set version = "1.78.0" %}
 {% set name = "affycomp" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 087b3614cc06dc45c424d3c9c8a2cafa
+  md5: f80b53dc57dcb88730eda3c0506b9df1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-affycomp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: splines, affycompData
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-affycompdata/meta.yaml b/recipes/bioconductor-affycompdata/meta.yaml
index 0004ba77c7269..0095e5b77d597 100644
--- a/recipes/bioconductor-affycompdata/meta.yaml
+++ b/recipes/bioconductor-affycompdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "affycompData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: adf2ee1552f1ee380e5ccbcf8246955d
+  md5: 205391e19fb160dcff1531892f28b006
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-affycompdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-affycomp >=1.76.0,<1.77.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-affycomp >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-affycomp >=1.76.0,<1.77.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-affycomp >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-affycompdata/post-link.sh b/recipes/bioconductor-affycompdata/post-link.sh
index 44727c3422456..8afa441ea7552 100644
--- a/recipes/bioconductor-affycompdata/post-link.sh
+++ b/recipes/bioconductor-affycompdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "affycompdata-1.38.0"
+installBiocDataPackage.sh "affycompdata-1.40.0"
diff --git a/recipes/bioconductor-affycontam/meta.yaml b/recipes/bioconductor-affycontam/meta.yaml
index 2bfac5ee1f649..5b27747fc443e 100644
--- a/recipes/bioconductor-affycontam/meta.yaml
+++ b/recipes/bioconductor-affycontam/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.58.0" %}
+{% set version = "1.60.0" %}
 {% set name = "affyContam" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 033e0738e646d2f9ba5ba1b0b072b915
+  md5: eb7e98d31e923d77d4e6197e5cf8b02d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-affycontam", max_pin="x.x") }}'
   noarch: generic
 # Suggests: hgu95av2cdf
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-affydata >=1.48.0,<1.49.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-affydata >=1.50.0,<1.51.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-affydata >=1.48.0,<1.49.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-affydata >=1.50.0,<1.51.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-affycoretools/meta.yaml b/recipes/bioconductor-affycoretools/meta.yaml
index bd9a73302edd7..a986df1b11158 100644
--- a/recipes/bioconductor-affycoretools/meta.yaml
+++ b/recipes/bioconductor-affycoretools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "affycoretools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 4235bb5e8547acf64c3c6a7d11c98c56
+  md5: 0e35c33fb3f3a4cdc7778efacbc45441
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-affycoretools", max_pin="x.x") }}'
   noarch: generic
 # Suggests: affydata, hgfocuscdf, BiocStyle, knitr, hgu95av2.db, rgl, rmarkdown
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-gcrma >=2.72.0,<2.73.0'
-    - 'bioconductor-glimma >=2.10.0,<2.11.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-reportingtools >=2.39.0,<2.40.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-gcrma >=2.74.0,<2.75.0'
+    - 'bioconductor-glimma >=2.12.0,<2.13.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-reportingtools >=2.42.0,<2.43.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dbi
     - r-ggplot2
@@ -42,18 +43,18 @@ requirements:
     - r-rsqlite
     - r-xtable
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-gcrma >=2.72.0,<2.73.0'
-    - 'bioconductor-glimma >=2.10.0,<2.11.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-reportingtools >=2.39.0,<2.40.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-gcrma >=2.74.0,<2.75.0'
+    - 'bioconductor-glimma >=2.12.0,<2.13.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-reportingtools >=2.42.0,<2.43.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dbi
     - r-ggplot2
diff --git a/recipes/bioconductor-affydata/meta.yaml b/recipes/bioconductor-affydata/meta.yaml
index 38fb326487ba1..2f929ae9839ca 100644
--- a/recipes/bioconductor-affydata/meta.yaml
+++ b/recipes/bioconductor-affydata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.1" %}
+{% set version = "1.50.0" %}
 {% set name = "affydata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 1c03aa529e4854f6680fcf4702d2bea7
+  md5: 29caf389ca94d4c0c0b27d993f33354c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-affydata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: hgu95av2cdf, hgu133acdf
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230718
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-affydata/post-link.sh b/recipes/bioconductor-affydata/post-link.sh
index 998d4b687d633..d1076767bb073 100644
--- a/recipes/bioconductor-affydata/post-link.sh
+++ b/recipes/bioconductor-affydata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "affydata-1.48.1"
+installBiocDataPackage.sh "affydata-1.50.0"
diff --git a/recipes/bioconductor-affyhgu133a2expr/meta.yaml b/recipes/bioconductor-affyhgu133a2expr/meta.yaml
index 8833f245300de..c8a6b90c26c8e 100644
--- a/recipes/bioconductor-affyhgu133a2expr/meta.yaml
+++ b/recipes/bioconductor-affyhgu133a2expr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "Affyhgu133A2Expr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 09a1e306ad46f08b9508343050ffa756
+  md5: 56296960e5539a4fd84724344f30aaaa
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-affyhgu133a2expr", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-affyhgu133a2expr/post-link.sh b/recipes/bioconductor-affyhgu133a2expr/post-link.sh
index 3489adaf54942..51c44933e7561 100644
--- a/recipes/bioconductor-affyhgu133a2expr/post-link.sh
+++ b/recipes/bioconductor-affyhgu133a2expr/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "affyhgu133a2expr-1.36.0"
+installBiocDataPackage.sh "affyhgu133a2expr-1.38.0"
diff --git a/recipes/bioconductor-affyhgu133aexpr/meta.yaml b/recipes/bioconductor-affyhgu133aexpr/meta.yaml
index 23dee4fe8b1a9..cb49ec76a1c59 100644
--- a/recipes/bioconductor-affyhgu133aexpr/meta.yaml
+++ b/recipes/bioconductor-affyhgu133aexpr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "Affyhgu133aExpr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e745cf07453b1f7151f28ddddced6be1
+  md5: 2cf458278c574450a3a5ffe64a2aa72b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-affyhgu133aexpr", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-affyhgu133aexpr/post-link.sh b/recipes/bioconductor-affyhgu133aexpr/post-link.sh
index c621da65bd9da..340a6ec306e19 100644
--- a/recipes/bioconductor-affyhgu133aexpr/post-link.sh
+++ b/recipes/bioconductor-affyhgu133aexpr/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "affyhgu133aexpr-1.38.0"
+installBiocDataPackage.sh "affyhgu133aexpr-1.40.0"
diff --git a/recipes/bioconductor-affyhgu133plus2expr/meta.yaml b/recipes/bioconductor-affyhgu133plus2expr/meta.yaml
index 22f780b7b0273..34d5b6c564a12 100644
--- a/recipes/bioconductor-affyhgu133plus2expr/meta.yaml
+++ b/recipes/bioconductor-affyhgu133plus2expr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "Affyhgu133Plus2Expr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 210b20595daf5314b8d5b90b5497eab4
+  md5: f8baac83db4de07f941552d7b62c8d62
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-affyhgu133plus2expr", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-affyhgu133plus2expr/post-link.sh b/recipes/bioconductor-affyhgu133plus2expr/post-link.sh
index e4d6cb7fb5882..61b0c8692f259 100644
--- a/recipes/bioconductor-affyhgu133plus2expr/post-link.sh
+++ b/recipes/bioconductor-affyhgu133plus2expr/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "affyhgu133plus2expr-1.34.0"
+installBiocDataPackage.sh "affyhgu133plus2expr-1.36.0"
diff --git a/recipes/bioconductor-affyilm/meta.yaml b/recipes/bioconductor-affyilm/meta.yaml
index 575b77bd63e71..6433bba0da600 100644
--- a/recipes/bioconductor-affyilm/meta.yaml
+++ b/recipes/bioconductor-affyilm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.52.0" %}
+{% set version = "1.54.0" %}
 {% set name = "affyILM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1e65e974cee281a713155a14d5ecf6a6
+  md5: 96d1989fb75742f6a9b0f9d8df1c3fc0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-affyilm", max_pin="x.x") }}'
   noarch: generic
 # Suggests: AffymetrixDataTestFiles, hgfocusprobe
 requirements:
   host:
-    - 'bioconductor-affxparser >=1.72.0,<1.73.0'
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-gcrma >=2.72.0,<2.73.0'
+    - 'bioconductor-affxparser >=1.74.0,<1.75.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-gcrma >=2.74.0,<2.75.0'
     - r-base
   run:
-    - 'bioconductor-affxparser >=1.72.0,<1.73.0'
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-gcrma >=2.72.0,<2.73.0'
+    - 'bioconductor-affxparser >=1.74.0,<1.75.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-gcrma >=2.74.0,<2.75.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-affyio/meta.yaml b/recipes/bioconductor-affyio/meta.yaml
index e2614e93f4455..7e1bef9f6ac34 100644
--- a/recipes/bioconductor-affyio/meta.yaml
+++ b/recipes/bioconductor-affyio/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.70.0" %}
+{% set version = "1.72.0" %}
 {% set name = "affyio" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 9fb97bfde087591251d7cda5c978e528
+  md5: 9bd1e4acedbf756386f96d4c1ebb21f3
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-affyio", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
   build:
     - {{ compiler('c') }}
@@ -35,11 +36,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'LGPL (>= 2)'
+  license: 'LGPL-3.0-or-later'
   summary: 'Tools for parsing Affymetrix data files'
   description: 'Routines for parsing Affymetrix data files based upon file format information. Primary focus is on accessing the CEL and CDF file formats.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/LGPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:affyio
     - doi:10.1038/nmeth.3252
diff --git a/recipes/bioconductor-affylmgui/meta.yaml b/recipes/bioconductor-affylmgui/meta.yaml
index 9ef33694a62a1..a22190a4e1974 100644
--- a/recipes/bioconductor-affylmgui/meta.yaml
+++ b/recipes/bioconductor-affylmgui/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.74.0" %}
+{% set version = "1.76.0" %}
 {% set name = "affylmGUI" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ae4622fe7a135671ded4e68d2e857760
+  md5: 22d9ba796444840fc24cf9b7384f81c9
 build:
-  number: 0 
+  number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-affylmgui", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-affyio >=1.70.0,<1.71.0'
-    - 'bioconductor-affyplm >=1.76.0,<1.77.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-gcrma >=2.72.0,<2.73.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-affyio >=1.72.0,<1.73.0'
+    - 'bioconductor-affyplm >=1.78.0,<1.79.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-gcrma >=2.74.0,<2.75.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-biocmanager
     - r-r2html
     - r-tkrplot
     - r-xtable
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-affyio >=1.70.0,<1.71.0'
-    - 'bioconductor-affyplm >=1.76.0,<1.77.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-gcrma >=2.72.0,<2.73.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-affyio >=1.72.0,<1.73.0'
+    - 'bioconductor-affyplm >=1.78.0,<1.79.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-gcrma >=2.74.0,<2.75.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-biocmanager
     - r-r2html
diff --git a/recipes/bioconductor-affymetrixdatatestfiles/meta.yaml b/recipes/bioconductor-affymetrixdatatestfiles/meta.yaml
index 4d5d904bd46aa..66437faa2f9b4 100644
--- a/recipes/bioconductor-affymetrixdatatestfiles/meta.yaml
+++ b/recipes/bioconductor-affymetrixdatatestfiles/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.38.0" %}
+{% set version = "0.40.0" %}
 {% set name = "AffymetrixDataTestFiles" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3aa3891584be3bcdab25e2b72b092edc
+  md5: 57ecb8e4d3f0d7a9cdcedb2a9648dd1e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-affymetrixdatatestfiles", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,14 +25,14 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/html/{{ name }}.html'
   license: LGPL-2.1
-  summary: 'Affymetrix data files (CEL, CDF, CHP, EXP, PGF, PSI) for testing'
+  summary: 'Affymetrix Data Files (CEL, CDF, CHP, EXP, PGF, PSI) for Testing'
   description: 'This package contains annotation data files and sample data files of Affymetrix file formats.  The files originate from the Affymetrix'' Fusion SDK distribution and other official sources.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/LGPL-2.1'
 
diff --git a/recipes/bioconductor-affymetrixdatatestfiles/post-link.sh b/recipes/bioconductor-affymetrixdatatestfiles/post-link.sh
index 3f6f79b4c0d41..e2ba7cf5c205a 100644
--- a/recipes/bioconductor-affymetrixdatatestfiles/post-link.sh
+++ b/recipes/bioconductor-affymetrixdatatestfiles/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "affymetrixdatatestfiles-0.38.0"
+installBiocDataPackage.sh "affymetrixdatatestfiles-0.40.0"
diff --git a/recipes/bioconductor-affymoe4302expr/meta.yaml b/recipes/bioconductor-affymoe4302expr/meta.yaml
index d7d15bc46a474..2c17903299ff0 100644
--- a/recipes/bioconductor-affymoe4302expr/meta.yaml
+++ b/recipes/bioconductor-affymoe4302expr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "Affymoe4302Expr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 277537172df894a0e7384d3e48d059b1
+  md5: 4dcd432d350cf2f8000f67774d95481c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-affymoe4302expr", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-affymoe4302expr/post-link.sh b/recipes/bioconductor-affymoe4302expr/post-link.sh
index 5c867c283a151..1c18e0a13e6be 100644
--- a/recipes/bioconductor-affymoe4302expr/post-link.sh
+++ b/recipes/bioconductor-affymoe4302expr/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "affymoe4302expr-1.38.0"
+installBiocDataPackage.sh "affymoe4302expr-1.40.0"
diff --git a/recipes/bioconductor-affyplm/meta.yaml b/recipes/bioconductor-affyplm/meta.yaml
index 1b6dfa0e06c33..6f6f1faaf8e41 100644
--- a/recipes/bioconductor-affyplm/meta.yaml
+++ b/recipes/bioconductor-affyplm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.76.1" %}
+{% set version = "1.78.0" %}
 {% set name = "affyPLM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9aae2ea1fdeafc1e540428a6d9d988d2
+  md5: cdfd69bc9c54f3c03b52b3fd6e9f86b7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
-# Suggests: affydata, MASS
+  run_exports: '{{ pin_subpackage("bioconductor-affyplm", max_pin="x.x") }}'
+# Suggests: affydata, MASS, hgu95av2cdf
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-gcrma >=2.72.0,<2.73.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-gcrma >=2.74.0,<2.75.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-gcrma >=2.72.0,<2.73.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-gcrma >=2.74.0,<2.75.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-affyrnadegradation/meta.yaml b/recipes/bioconductor-affyrnadegradation/meta.yaml
index e7d30099c638b..0cc0bd45177a2 100644
--- a/recipes/bioconductor-affyrnadegradation/meta.yaml
+++ b/recipes/bioconductor-affyrnadegradation/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "AffyRNADegradation" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 81aaa5c79893376798c726d114779512
+  md5: 4affd7f48b178750311671c1f2ac8c4f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-affyrnadegradation", max_pin="x.x") }}'
   noarch: generic
-# Suggests: AmpAffyExample
+# Suggests: AmpAffyExample, hgu133acdf
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-ag.db/meta.yaml b/recipes/bioconductor-ag.db/meta.yaml
index 93456c5bae844..7b597e80ef24d 100644
--- a/recipes/bioconductor-ag.db/meta.yaml
+++ b/recipes/bioconductor-ag.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "ag.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 925e808d2c9b21a11ed131d483e75ab6
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ag.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.at.tair.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.at.tair.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.at.tair.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.at.tair.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-agcdf/meta.yaml b/recipes/bioconductor-agcdf/meta.yaml
index 5a63ca629b14e..312952757082a 100644
--- a/recipes/bioconductor-agcdf/meta.yaml
+++ b/recipes/bioconductor-agcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "agcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 5dd14bc6a6d2729f5e7b170105c78e48
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-agcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-agdex/meta.yaml b/recipes/bioconductor-agdex/meta.yaml
index 3720941870845..4304a5d0cccc5 100644
--- a/recipes/bioconductor-agdex/meta.yaml
+++ b/recipes/bioconductor-agdex/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "AGDEX" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 73f6cbece97c53821c785468dabca2e8
+  md5: 9e74a7202bdc2e422e2213f1fb7a23f1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-agdex", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-aggregatebiovar/meta.yaml b/recipes/bioconductor-aggregatebiovar/meta.yaml
index 90ddcba32e1fb..a32ad85909c4c 100644
--- a/recipes/bioconductor-aggregatebiovar/meta.yaml
+++ b/recipes/bioconductor-aggregatebiovar/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "aggregateBioVar" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 480e81b8e909d164fa86ce05b7d412a1
+  md5: f389a909fab4bbc4cb526505c68f22e1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-aggregatebiovar", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, magick, knitr, rmarkdown, testthat, BiocGenerics, DESeq2, magrittr, dplyr, ggplot2, cowplot, ggtext, RColorBrewer, pheatmap, viridis
 requirements:
   host:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - r-rlang
     - r-tibble
   run:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - r-rlang
diff --git a/recipes/bioconductor-agilp/meta.yaml b/recipes/bioconductor-agilp/meta.yaml
index 6d77d5bf3c196..e3c5bbb5a3261 100644
--- a/recipes/bioconductor-agilp/meta.yaml
+++ b/recipes/bioconductor-agilp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.32.0" %}
+{% set version = "3.34.0" %}
 {% set name = "agilp" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 573fbba741e2d0b2a99db971555f598d
+  md5: 21b54a703747520483657dd63288f403
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-agilp", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-agimicrorna/meta.yaml b/recipes/bioconductor-agimicrorna/meta.yaml
index ab7e912ca8bf9..5030fc363a442 100644
--- a/recipes/bioconductor-agimicrorna/meta.yaml
+++ b/recipes/bioconductor-agimicrorna/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.50.0" %}
+{% set version = "2.52.0" %}
 {% set name = "AgiMicroRna" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5d971cfaddf49f4b7296a833a4a818dd
+  md5: 1c1046ab29a7766af0c602c974b4ec21
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-agimicrorna", max_pin="x.x") }}'
   noarch: generic
 # Suggests: geneplotter,marray,gplots,gtools,gdata,codelink
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-affycoretools >=1.72.0,<1.73.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-affycoretools >=1.74.0,<1.75.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-affycoretools >=1.72.0,<1.73.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-affycoretools >=1.74.0,<1.75.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-agprobe/meta.yaml b/recipes/bioconductor-agprobe/meta.yaml
index 4740b9dcb4668..c2ba8fe20c5c7 100644
--- a/recipes/bioconductor-agprobe/meta.yaml
+++ b/recipes/bioconductor-agprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "agprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 08f7527d4c8a30d8b2f86016a53f075a
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-agprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ahcytobands/meta.yaml b/recipes/bioconductor-ahcytobands/meta.yaml
index 1ee85ebf82f04..1fd99874310a1 100644
--- a/recipes/bioconductor-ahcytobands/meta.yaml
+++ b/recipes/bioconductor-ahcytobands/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.1" %}
 {% set name = "AHCytoBands" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 3dd85d02e7ed3fca4c7898b5e395edeb
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ahcytobands", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ahensdbs/meta.yaml b/recipes/bioconductor-ahensdbs/meta.yaml
index e28373c8ea6a6..117aeb2c7ff6a 100644
--- a/recipes/bioconductor-ahensdbs/meta.yaml
+++ b/recipes/bioconductor-ahensdbs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.1.8" %}
+{% set version = "1.1.10" %}
 {% set name = "AHEnsDbs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f2c8c9338f09f480a46e1155d985d08f
+  md5: 63aa3efc1c85d5a26e4d69d50f781a2a
 build:
-  number: 1
+  number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ahensdbs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, AnnotationHub (>= 2.7.13), rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationhubdata >=1.30.0,<1.31.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
+    - 'bioconductor-annotationhubdata >=1.32.0,<1.33.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
     - r-base
   run:
-    - 'bioconductor-annotationhubdata >=1.30.0,<1.31.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
+    - 'bioconductor-annotationhubdata >=1.32.0,<1.33.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ahensdbs/post-link.sh b/recipes/bioconductor-ahensdbs/post-link.sh
index fa692e021139b..e004d994abd34 100644
--- a/recipes/bioconductor-ahensdbs/post-link.sh
+++ b/recipes/bioconductor-ahensdbs/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "ahensdbs-1.1.8"
+installBiocDataPackage.sh "ahensdbs-1.1.10"
diff --git a/recipes/bioconductor-ahlrbasedbs/meta.yaml b/recipes/bioconductor-ahlrbasedbs/meta.yaml
index bd2c3c2f62e9d..29db9f49d2eb6 100644
--- a/recipes/bioconductor-ahlrbasedbs/meta.yaml
+++ b/recipes/bioconductor-ahlrbasedbs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.7.0" %}
 {% set name = "AHLRBaseDbs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1427836afe85a5b580f7277e7d2c08ca
+  md5: 5df6ef84988477d6262e54abd07c82da
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ahlrbasedbs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ahlrbasedbs/post-link.sh b/recipes/bioconductor-ahlrbasedbs/post-link.sh
index cfac5d956723a..b59c08f98bc83 100644
--- a/recipes/bioconductor-ahlrbasedbs/post-link.sh
+++ b/recipes/bioconductor-ahlrbasedbs/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "ahlrbasedbs-1.6.0"
+installBiocDataPackage.sh "ahlrbasedbs-1.7.0"
diff --git a/recipes/bioconductor-ahmassbank/meta.yaml b/recipes/bioconductor-ahmassbank/meta.yaml
index 7fea5ede930f7..6db48bd579837 100644
--- a/recipes/bioconductor-ahmassbank/meta.yaml
+++ b/recipes/bioconductor-ahmassbank/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "AHMassBank" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 05f8f3c29029047132ee58b4e2a1f4b0
+  md5: b9ddc7dff0cabd4b170bc750cc3c47d3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ahmassbank", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, AnnotationHub (>= 2.7.13), rmarkdown, methods, CompoundDb (>= 1.1.4)
 requirements:
   host:
-    - 'bioconductor-annotationhubdata >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhubdata >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-annotationhubdata >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhubdata >=1.32.0,<1.33.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-ahmeshdbs/meta.yaml b/recipes/bioconductor-ahmeshdbs/meta.yaml
index b0c0131347691..f7efca97a5554 100644
--- a/recipes/bioconductor-ahmeshdbs/meta.yaml
+++ b/recipes/bioconductor-ahmeshdbs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.7.0" %}
 {% set name = "AHMeSHDbs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7fe9c77aaff9175d842cb4f4b9313360
+  md5: 9bbcae25794d2f854a122ba36a4e4c5c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ahmeshdbs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ahmeshdbs/post-link.sh b/recipes/bioconductor-ahmeshdbs/post-link.sh
index 36a8a0bf2cf59..4b406789a1680 100644
--- a/recipes/bioconductor-ahmeshdbs/post-link.sh
+++ b/recipes/bioconductor-ahmeshdbs/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "ahmeshdbs-1.6.0"
+installBiocDataPackage.sh "ahmeshdbs-1.7.0"
diff --git a/recipes/bioconductor-ahpathbankdbs/meta.yaml b/recipes/bioconductor-ahpathbankdbs/meta.yaml
index 5caa56ea627f4..aa5554f14038d 100644
--- a/recipes/bioconductor-ahpathbankdbs/meta.yaml
+++ b/recipes/bioconductor-ahpathbankdbs/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.5" %}
 {% set name = "AHPathbankDbs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 70339eae8c03c47248b612b365bda4ff
 build:
-  number: 4
+  number: 5
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ahpathbankdbs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, magrittr, dplyr, tibble, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ahpubmeddbs/meta.yaml b/recipes/bioconductor-ahpubmeddbs/meta.yaml
index e15a881301fbb..8692df0e1a8d1 100644
--- a/recipes/bioconductor-ahpubmeddbs/meta.yaml
+++ b/recipes/bioconductor-ahpubmeddbs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.7.0" %}
 {% set name = "AHPubMedDbs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 91815a0aa91e19d171fad3b116d02eed
+  md5: b2db2eda6009bc9cdec579c4ab579f25
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ahpubmeddbs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ahpubmeddbs/post-link.sh b/recipes/bioconductor-ahpubmeddbs/post-link.sh
index c24116e69908e..42e051ec75f48 100644
--- a/recipes/bioconductor-ahpubmeddbs/post-link.sh
+++ b/recipes/bioconductor-ahpubmeddbs/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "ahpubmeddbs-1.6.0"
+installBiocDataPackage.sh "ahpubmeddbs-1.7.0"
diff --git a/recipes/bioconductor-ahwikipathwaysdbs/meta.yaml b/recipes/bioconductor-ahwikipathwaysdbs/meta.yaml
index 02f5241e55a69..73c928b6ecca4 100644
--- a/recipes/bioconductor-ahwikipathwaysdbs/meta.yaml
+++ b/recipes/bioconductor-ahwikipathwaysdbs/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.4" %}
 {% set name = "AHWikipathwaysDbs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: ffa90f6d6e8832ae6f4b5bf8b151cd46
 build:
-  number: 4
+  number: 5
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ahwikipathwaysdbs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, magrittr, dplyr, tibble, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-aims/meta.yaml b/recipes/bioconductor-aims/meta.yaml
index cd75109310927..4e9667789a111 100644
--- a/recipes/bioconductor-aims/meta.yaml
+++ b/recipes/bioconductor-aims/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "AIMS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 37736eda0cf70c07064ae8930a25b930
+  md5: 23ef11145babcac9430b2c94db4dfae3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-aims", max_pin="x.x") }}'
   noarch: generic
 # Suggests: breastCancerVDX, hgu133a.db, RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-e1071
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-e1071
 test:
diff --git a/recipes/bioconductor-airpart/meta.yaml b/recipes/bioconductor-airpart/meta.yaml
index 21438ee070670..c343eeefb76a6 100644
--- a/recipes/bioconductor-airpart/meta.yaml
+++ b/recipes/bioconductor-airpart/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "airpart" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 5c42ac799c2fa8c3364cb7cc965161a1
+  md5: 59977674a0dc5eb9f4bd03ef89a73630
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-airpart", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, roxygen2 (>= 6.0.0), testthat (>= 3.0.0), gplots, tidyr
 requirements:
   host:
-    - 'bioconductor-apeglm >=1.22.0,<1.23.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-apeglm >=1.24.0,<1.25.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-clue
     - r-dplyr
@@ -43,12 +44,12 @@ requirements:
     - r-rlang
     - r-smurf
   run:
-    - 'bioconductor-apeglm >=1.22.0,<1.23.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-apeglm >=1.24.0,<1.25.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-clue
     - r-dplyr
diff --git a/recipes/bioconductor-airway/meta.yaml b/recipes/bioconductor-airway/meta.yaml
index 9c721d737617c..ba924b9263df0 100644
--- a/recipes/bioconductor-airway/meta.yaml
+++ b/recipes/bioconductor-airway/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "airway" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 9c79ded2f4d44b3a865a1e489c6d151d
+  md5: ffed4ae3349ebeeeabff9f1456b8ba1d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-airway", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, GEOquery, markdown
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-airway/post-link.sh b/recipes/bioconductor-airway/post-link.sh
index b21924a129852..a8e50bfc60ff3 100644
--- a/recipes/bioconductor-airway/post-link.sh
+++ b/recipes/bioconductor-airway/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "airway-1.20.0"
+installBiocDataPackage.sh "airway-1.22.0"
diff --git a/recipes/bioconductor-alabaster.base/meta.yaml b/recipes/bioconductor-alabaster.base/meta.yaml
index 7e76be0f452d4..22787eb448ec7 100644
--- a/recipes/bioconductor-alabaster.base/meta.yaml
+++ b/recipes/bioconductor-alabaster.base/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.1" %}
 {% set name = "alabaster.base" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 4bfa805d3a2b3c8a6c9ee45807ff68c5
+  md5: 2d6215dfe9b8412438f9b05b54be2331
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-alabaster.base", max_pin="x.x") }}'
 # Suggests: BiocStyle, rmarkdown, knitr, testthat, digest, Matrix
 # SystemRequirements: C++17, GNU make
 requirements:
   host:
-    - 'bioconductor-alabaster.schemas >=1.0.0,<1.1.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-alabaster.schemas >=1.2.0,<1.3.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-jsonlite
     - r-jsonvalidate
@@ -32,10 +33,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-alabaster.schemas >=1.0.0,<1.1.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-alabaster.schemas >=1.2.0,<1.3.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-jsonlite
     - r-jsonvalidate
diff --git a/recipes/bioconductor-alabaster.bumpy/meta.yaml b/recipes/bioconductor-alabaster.bumpy/meta.yaml
index f35a409108fe7..ab61aee778ded 100644
--- a/recipes/bioconductor-alabaster.bumpy/meta.yaml
+++ b/recipes/bioconductor-alabaster.bumpy/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "alabaster.bumpy" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 7c4104e604cc3b9d6f7b3d8d9a81bfb1
+  md5: 0d5111cd74d5b72fc88eb66ac5b670c3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-alabaster.bumpy", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, rmarkdown, knitr, testthat, jsonlite
 requirements:
   host:
-    - 'bioconductor-alabaster.base >=1.0.0,<1.1.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bumpymatrix >=1.8.0,<1.9.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-alabaster.base >=1.2.0,<1.3.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bumpymatrix >=1.10.0,<1.11.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-matrix
   run:
-    - 'bioconductor-alabaster.base >=1.0.0,<1.1.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bumpymatrix >=1.8.0,<1.9.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-alabaster.base >=1.2.0,<1.3.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bumpymatrix >=1.10.0,<1.11.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-matrix
 test:
diff --git a/recipes/bioconductor-alabaster.files/build.sh b/recipes/bioconductor-alabaster.files/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-alabaster.files/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-alabaster.files/meta.yaml b/recipes/bioconductor-alabaster.files/meta.yaml
new file mode 100644
index 0000000000000..a91a9a98a4880
--- /dev/null
+++ b/recipes/bioconductor-alabaster.files/meta.yaml
@@ -0,0 +1,49 @@
+{% set version = "1.0.0" %}
+{% set name = "alabaster.files" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
+  md5: ea12d81dadbad7340c5f2d6be276a697
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-alabaster.files", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, rmarkdown, knitr, testthat, VariantAnnotation
+requirements:
+  host:
+    - 'bioconductor-alabaster.base >=1.2.0,<1.3.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - r-base
+  run:
+    - 'bioconductor-alabaster.base >=1.2.0,<1.3.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - r-base
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'MIT + file LICENSE'
+  summary: 'Wrappers to Save Common File Formats'
+  description: 'Save common bioinformatics file formats within the alabaster framework. This includes BAM, BED, VCF, bigWig, bigBed, FASTQ, FASTA and so on. We save and load additional metadata for each file, and we support linkage between each file and its corresponding index.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-alabaster.mae/meta.yaml b/recipes/bioconductor-alabaster.mae/meta.yaml
index 7625f9251190e..15bed2c113976 100644
--- a/recipes/bioconductor-alabaster.mae/meta.yaml
+++ b/recipes/bioconductor-alabaster.mae/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "alabaster.mae" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f6eceed081467ce7d72c747bb1a0d11a
+  md5: 43abcdda61fc9d69dbc24dbd1c91664d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-alabaster.mae", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, SummarizedExperiment, BiocParallel, BiocStyle, rmarkdown
 requirements:
   host:
-    - 'bioconductor-alabaster.base >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.se >=1.0.0,<1.1.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-alabaster.base >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.se >=1.2.0,<1.3.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-alabaster.base >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.se >=1.0.0,<1.1.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-alabaster.base >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.se >=1.2.0,<1.3.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-alabaster.matrix/meta.yaml b/recipes/bioconductor-alabaster.matrix/meta.yaml
index ff390004bf852..73ee0d6404f07 100644
--- a/recipes/bioconductor-alabaster.matrix/meta.yaml
+++ b/recipes/bioconductor-alabaster.matrix/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "alabaster.matrix" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 4b93a993b0f4a9b3333da48a8f49ad36
+  md5: 099a01bbb4a95bdaf0f91ffd2b89653d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-alabaster.matrix", max_pin="x.x") }}'
   noarch: generic
-# Suggests: testthat, knitr, BiocGenerics, BiocStyle, S4Vectors, chihaya
+# Suggests: testthat, knitr, BiocStyle, chihaya
 requirements:
   host:
-    - 'bioconductor-alabaster.base >=1.0.0,<1.1.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
+    - 'bioconductor-alabaster.base >=1.2.0,<1.3.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-sparsearray >=1.2.0,<1.3.0'
     - r-base
     - r-matrix
   run:
-    - 'bioconductor-alabaster.base >=1.0.0,<1.1.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
+    - 'bioconductor-alabaster.base >=1.2.0,<1.3.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-sparsearray >=1.2.0,<1.3.0'
     - r-base
     - r-matrix
 test:
diff --git a/recipes/bioconductor-alabaster.ranges/meta.yaml b/recipes/bioconductor-alabaster.ranges/meta.yaml
index 27bdfbd3ca23a..d912501aceef5 100644
--- a/recipes/bioconductor-alabaster.ranges/meta.yaml
+++ b/recipes/bioconductor-alabaster.ranges/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "alabaster.ranges" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 846f2604ddc36ae98f28443f4b12d305
+  md5: af5d849080999b0167cc39fc182721e9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-alabaster.ranges", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, BiocStyle, jsonlite
 requirements:
   host:
-    - 'bioconductor-alabaster.base >=1.0.0,<1.1.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-alabaster.base >=1.2.0,<1.3.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-alabaster.base >=1.0.0,<1.1.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-alabaster.base >=1.2.0,<1.3.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-alabaster.sce/meta.yaml b/recipes/bioconductor-alabaster.sce/meta.yaml
index 0c99a764670fb..dbb5845379eba 100644
--- a/recipes/bioconductor-alabaster.sce/meta.yaml
+++ b/recipes/bioconductor-alabaster.sce/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "alabaster.sce" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 9a732c09296222711d8296d5b896ac62
+  md5: e508f30fb84947c7246b093b63a5aea3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-alabaster.sce", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, BiocStyle, rmarkdown
 requirements:
   host:
-    - 'bioconductor-alabaster.base >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.se >=1.0.0,<1.1.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-alabaster.base >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.se >=1.2.0,<1.3.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
   run:
-    - 'bioconductor-alabaster.base >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.se >=1.0.0,<1.1.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-alabaster.base >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.se >=1.2.0,<1.3.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-alabaster.schemas/meta.yaml b/recipes/bioconductor-alabaster.schemas/meta.yaml
index b54d01a99b1e8..6a45f9d6cc290 100644
--- a/recipes/bioconductor-alabaster.schemas/meta.yaml
+++ b/recipes/bioconductor-alabaster.schemas/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.2" %}
+{% set version = "1.2.0" %}
 {% set name = "alabaster.schemas" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 07cb1f4f931f7fcde891ab11857ad443
+  md5: 308883d85ab416d45eaa55428463d308
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-alabaster.schemas", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle
 requirements:
diff --git a/recipes/bioconductor-alabaster.se/meta.yaml b/recipes/bioconductor-alabaster.se/meta.yaml
index a60bca1f22d7a..6a54ef0e020fa 100644
--- a/recipes/bioconductor-alabaster.se/meta.yaml
+++ b/recipes/bioconductor-alabaster.se/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "alabaster.se" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: e93f0f6699394a9fbb4b8048567a5538
+  md5: 25133d88cc71ec6029229772a1eee0e8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-alabaster.se", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, knitr, testthat, BiocStyle, jsonlite
 requirements:
   host:
-    - 'bioconductor-alabaster.base >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.matrix >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.ranges >=1.0.0,<1.1.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-alabaster.base >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.matrix >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.ranges >=1.2.0,<1.3.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-alabaster.base >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.matrix >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.ranges >=1.0.0,<1.1.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-alabaster.base >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.matrix >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.ranges >=1.2.0,<1.3.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-alabaster.spatial/meta.yaml b/recipes/bioconductor-alabaster.spatial/meta.yaml
index 8981659d9e157..fa129e7aa9045 100644
--- a/recipes/bioconductor-alabaster.spatial/meta.yaml
+++ b/recipes/bioconductor-alabaster.spatial/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "alabaster.spatial" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: b8804e5e38ef912c8d1a04343f03f748
+  md5: 906d73c492ba97e8eda563055c51bbfc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-alabaster.spatial", max_pin="x.x") }}'
   noarch: generic
-# Suggests: testthat, knitr, rmarkdown, BiocStyle, magick, png, digest
+# Suggests: testthat, knitr, rmarkdown, BiocStyle, DropletUtils, magick, png, digest
 requirements:
   host:
-    - 'bioconductor-alabaster.base >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.sce >=1.0.0,<1.1.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-alabaster.base >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.sce >=1.2.0,<1.3.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-jsonlite
   run:
-    - 'bioconductor-alabaster.base >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.sce >=1.0.0,<1.1.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-alabaster.base >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.sce >=1.2.0,<1.3.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-jsonlite
 test:
diff --git a/recipes/bioconductor-alabaster.string/meta.yaml b/recipes/bioconductor-alabaster.string/meta.yaml
index 332effb707a9e..3ab554683fc97 100644
--- a/recipes/bioconductor-alabaster.string/meta.yaml
+++ b/recipes/bioconductor-alabaster.string/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.1" %}
+{% set version = "1.2.0" %}
 {% set name = "alabaster.string" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 0ca363e28ab6a9dd4cba70484a090f13
+  md5: b7add7aa52b8835471b04038842da095
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-alabaster.string", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, rmarkdown, knitr, testthat
 requirements:
   host:
-    - 'bioconductor-alabaster.base >=1.0.0,<1.1.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-alabaster.base >=1.2.0,<1.3.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
   run:
-    - 'bioconductor-alabaster.base >=1.0.0,<1.1.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-alabaster.base >=1.2.0,<1.3.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-alabaster.vcf/meta.yaml b/recipes/bioconductor-alabaster.vcf/meta.yaml
index b21377382c639..191429828c512 100644
--- a/recipes/bioconductor-alabaster.vcf/meta.yaml
+++ b/recipes/bioconductor-alabaster.vcf/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "alabaster.vcf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: a512241aa940a4dd220d86da0b94aea4
+  md5: e0873ba68051843f6a35b01fef673423
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-alabaster.vcf", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, testthat
 requirements:
   host:
-    - 'bioconductor-alabaster.base >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.se >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.string >=1.0.0,<1.1.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-alabaster.base >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.se >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.string >=1.2.0,<1.3.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-alabaster.base >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.se >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.string >=1.0.0,<1.1.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-alabaster.base >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.se >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.string >=1.2.0,<1.3.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-alabaster/meta.yaml b/recipes/bioconductor-alabaster/meta.yaml
index 89cfcdd85a328..2189836f4b577 100644
--- a/recipes/bioconductor-alabaster/meta.yaml
+++ b/recipes/bioconductor-alabaster/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "alabaster" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,38 +11,39 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 8755db5053974ae9995e52dc59ac6dd1
+  md5: 359d26d34b8867dd418d0d277b0228c9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-alabaster", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-alabaster.base >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.bumpy >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.mae >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.matrix >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.ranges >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.sce >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.se >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.spatial >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.string >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.vcf >=1.0.0,<1.1.0'
+    - 'bioconductor-alabaster.base >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.bumpy >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.mae >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.matrix >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.ranges >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.sce >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.se >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.spatial >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.string >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.vcf >=1.2.0,<1.3.0'
     - r-base
   run:
-    - 'bioconductor-alabaster.base >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.bumpy >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.mae >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.matrix >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.ranges >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.sce >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.se >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.spatial >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.string >=1.0.0,<1.1.0'
-    - 'bioconductor-alabaster.vcf >=1.0.0,<1.1.0'
+    - 'bioconductor-alabaster.base >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.bumpy >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.mae >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.matrix >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.ranges >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.sce >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.se >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.spatial >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.string >=1.2.0,<1.3.0'
+    - 'bioconductor-alabaster.vcf >=1.2.0,<1.3.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-aldex2/meta.yaml b/recipes/bioconductor-aldex2/meta.yaml
index 700bf9e091a1a..70392f9f4f9ec 100644
--- a/recipes/bioconductor-aldex2/meta.yaml
+++ b/recipes/bioconductor-aldex2/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "ALDEx2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,40 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 345d5814c97ec89e886d3cea6de71fc2
+  md5: 359e47382b7cac1093aa1a5c24307cec
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-aldex2", max_pin="x.x") }}'
   noarch: generic
-# Suggests: testthat, BiocStyle, knitr, rmarkdown
+# Suggests: testthat, BiocStyle, knitr, rmarkdown, purrr, ggpattern, ggplot2, cowplot, tidyverse, magick
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
+    - r-directlabels
+    - r-lattice
+    - r-latticeextra
     - r-rfast
     - r-zcompositions
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
+    - r-directlabels
+    - r-lattice
+    - r-latticeextra
     - r-rfast
     - r-zcompositions
 test:
@@ -45,9 +52,9 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'GPL (>= 3)'
-  summary: 'Analysis Of Differential Abundance Taking Sample Variation Into Account'
-  description: 'A differential abundance analysis for the comparison of two or more conditions. Useful for analyzing data from standard RNA-seq or meta-RNA-seq assays as well as selected and unselected values from in-vitro sequence selections. Uses a Dirichlet-multinomial model to infer abundance from counts, optimized for three or more experimental replicates. The method infers biological and sampling variation to calculate the expected false discovery rate, given the variation, based on a Wilcoxon Rank Sum test and Welch''s t-test (via aldex.ttest), a Kruskal-Wallis test (via aldex.kw), a generalized linear model (via aldex.glm), or a correlation test (via aldex.corr). All tests report p-values and Benjamini-Hochberg corrected p-values. ALDEx2 also calculates expected standardized effect sizes for paired or unpaired study designs.'
+  license: 'GPL (>=3)'
+  summary: 'Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account'
+  description: 'A differential abundance analysis for the comparison of two or more conditions. Useful for analyzing data from standard RNA-seq or meta-RNA-seq assays as well as selected and unselected values from in-vitro sequence selections. Uses a Dirichlet-multinomial model to infer abundance from counts, optimized for three or more experimental replicates. The method infers biological and sampling variation to calculate the expected false discovery rate, given the variation, based on a Wilcoxon Rank Sum test and Welch''s t-test (via aldex.ttest), a Kruskal-Wallis test (via aldex.kw), a generalized linear model (via aldex.glm), or a correlation test (via aldex.corr). All tests report predicted p-values and posterior Benjamini-Hochberg corrected p-values. ALDEx2 also calculates expected standardized effect sizes for paired or unpaired study designs. ALDEx2 can now be used to estimate the effect of scale on the results and report on the scale-dependent robustness of results.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
   identifiers:
diff --git a/recipes/bioconductor-alevinqc/meta.yaml b/recipes/bioconductor-alevinqc/meta.yaml
index ac2601164b7a3..619d9e458faed 100644
--- a/recipes/bioconductor-alevinqc/meta.yaml
+++ b/recipes/bioconductor-alevinqc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "alevinQC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: bced99162e87f3f524220f1609769e5a
+  md5: fa79ac8ac72e4d6d16c096886e9f759d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-alevinqc", max_pin="x.x") }}'
 # Suggests: knitr, BiocStyle, testthat (>= 3.0.0), BiocManager
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-tximport >=1.28.0,<1.29.0'
+    - 'bioconductor-tximport >=1.30.0,<1.31.0'
     - r-base
     - r-cowplot
     - r-dplyr
     - r-dt
     - r-ggally
-    - r-ggplot2
+    - 'r-ggplot2 >=3.4.0'
     - r-rcpp
     - r-rjson
     - r-rlang
@@ -37,13 +38,13 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-tximport >=1.28.0,<1.29.0'
+    - 'bioconductor-tximport >=1.30.0,<1.31.0'
     - r-base
     - r-cowplot
     - r-dplyr
     - r-dt
     - r-ggally
-    - r-ggplot2
+    - 'r-ggplot2 >=3.4.0'
     - r-rcpp
     - r-rjson
     - r-rlang
@@ -61,6 +62,6 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: 'MIT + file LICENSE'
   summary: 'Generate QC Reports For Alevin Output'
-  description: 'Generate QC reports summarizing the output from an alevin run. Reports can be generated as html or pdf files, or as shiny applications.'
+  description: 'Generate QC reports summarizing the output from an alevin, alevin-fry, or simpleaf run. Reports can be generated as html or pdf files, or as shiny applications.'
   license_file: LICENSE
 
diff --git a/recipes/bioconductor-all/meta.yaml b/recipes/bioconductor-all/meta.yaml
index db938a4bcb525..21dff1b6d6ed1 100644
--- a/recipes/bioconductor-all/meta.yaml
+++ b/recipes/bioconductor-all/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "ALL" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_{{ name|lower }}.tar.gz'
-  md5: 11b7809ea96d31a9f1bc3eb56a2650c1
+  md5: b80eb482b4937ef4eac01027ac95a61a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-all", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rpart
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-all/post-link.sh b/recipes/bioconductor-all/post-link.sh
index 447c44b75808a..2c5b04230e97b 100644
--- a/recipes/bioconductor-all/post-link.sh
+++ b/recipes/bioconductor-all/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "all-1.42.0"
+installBiocDataPackage.sh "all-1.44.0"
diff --git a/recipes/bioconductor-allelicimbalance/meta.yaml b/recipes/bioconductor-allelicimbalance/meta.yaml
index 9180922a1fa1d..bcbc7a1991cf6 100644
--- a/recipes/bioconductor-allelicimbalance/meta.yaml
+++ b/recipes/bioconductor-allelicimbalance/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "AllelicImbalance" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6c8e2b8b1555f07edd8140aaca21e530
+  md5: 9eb6991f47f1337aef63f9ce750db08a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-allelicimbalance", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene, SNPlocs.Hsapiens.dbSNP144.GRCh37, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-gridextra
     - r-lattice
@@ -42,20 +43,20 @@ requirements:
     - r-nlme
     - r-seqinr
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-gridextra
     - r-lattice
diff --git a/recipes/bioconductor-allmll/meta.yaml b/recipes/bioconductor-allmll/meta.yaml
index 693c6f690c605..e181a78da8504 100644
--- a/recipes/bioconductor-allmll/meta.yaml
+++ b/recipes/bioconductor-allmll/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "ALLMLL" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f4c0642007ed854280b06339d989d94f
+  md5: 669e7ff030b6fea51c8013816bd6fae7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-allmll", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-allmll/post-link.sh b/recipes/bioconductor-allmll/post-link.sh
index 9fdf373467321..f9958cf78ac2a 100644
--- a/recipes/bioconductor-allmll/post-link.sh
+++ b/recipes/bioconductor-allmll/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "allmll-1.40.0"
+installBiocDataPackage.sh "allmll-1.42.0"
diff --git a/recipes/bioconductor-alphabeta/meta.yaml b/recipes/bioconductor-alphabeta/meta.yaml
index 7b455fcd87496..a5240ce1ab0a6 100644
--- a/recipes/bioconductor-alphabeta/meta.yaml
+++ b/recipes/bioconductor-alphabeta/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "AlphaBeta" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3daff3508c604ad2d2bea4d51bfd3e9b
+  md5: b03e94ae649db2b4141f97a7859e0683
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-alphabeta", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - 'r-data.table >=1.10'
     - 'r-dplyr >=0.7'
@@ -33,7 +34,7 @@ requirements:
     - 'r-plotly >=4.9'
     - 'r-stringr >=1.3'
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - 'r-data.table >=1.10'
     - 'r-dplyr >=0.7'
diff --git a/recipes/bioconductor-alphamissense.v2023.hg19/meta.yaml b/recipes/bioconductor-alphamissense.v2023.hg19/meta.yaml
new file mode 100644
index 0000000000000..c4e4b98feb206
--- /dev/null
+++ b/recipes/bioconductor-alphamissense.v2023.hg19/meta.yaml
@@ -0,0 +1,42 @@
+{% set version = "3.18.2" %}
+{% set name = "AlphaMissense.v2023.hg19" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: e8784ad000be637321f432188a5a3f45
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-alphamissense.v2023.hg19", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: knitr, rmarkdown, BiocStyle
+requirements:
+  host:
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - r-base
+  run:
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - r-base
+    - curl
+    - 'bioconductor-data-packages >=20231203'
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'AlphaMissense v2023 Pathogenicity Scores AnnotationHub Resource Metadata for hg19'
+  description: 'Store Google DeepMind AlphaMissense v2023 hg19 pathogenicity scores AnnotationHub Resource Metadata. Provide provenance and citation information for Google DeepMind AlphaMissense v2023 hg19 pathogenicity score AnnotationHub resources. Illustrate in a vignette how to access those resources.'
+
diff --git a/recipes/bioconductor-alphamissense.v2023.hg19/post-link.sh b/recipes/bioconductor-alphamissense.v2023.hg19/post-link.sh
new file mode 100644
index 0000000000000..ed7e4efe56562
--- /dev/null
+++ b/recipes/bioconductor-alphamissense.v2023.hg19/post-link.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+installBiocDataPackage.sh "alphamissense.v2023.hg19-3.18.2"
diff --git a/recipes/bioconductor-alphamissense.v2023.hg19/pre-unlink.sh b/recipes/bioconductor-alphamissense.v2023.hg19/pre-unlink.sh
new file mode 100644
index 0000000000000..410f375b8c15b
--- /dev/null
+++ b/recipes/bioconductor-alphamissense.v2023.hg19/pre-unlink.sh
@@ -0,0 +1 @@
+R CMD REMOVE --library=$PREFIX/lib/R/library/ AlphaMissense.v2023.hg19
diff --git a/recipes/bioconductor-alphamissense.v2023.hg38/meta.yaml b/recipes/bioconductor-alphamissense.v2023.hg38/meta.yaml
new file mode 100644
index 0000000000000..5974912274231
--- /dev/null
+++ b/recipes/bioconductor-alphamissense.v2023.hg38/meta.yaml
@@ -0,0 +1,42 @@
+{% set version = "3.18.2" %}
+{% set name = "AlphaMissense.v2023.hg38" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: bedac9523e18829c5067dec1ebf801d4
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-alphamissense.v2023.hg38", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: knitr, rmarkdown, BiocStyle
+requirements:
+  host:
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - r-base
+  run:
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - r-base
+    - curl
+    - 'bioconductor-data-packages >=20231203'
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'AlphaMissense v2023 Pathogenicity Scores AnnotationHub Resource Metadata for hg38'
+  description: 'Store Google DeepMind AlphaMissense v2023 hg38 pathogenicity scores AnnotationHub Resource Metadata. Provide provenance and citation information for Google DeepMind AlphaMissense v2023 hg38 pathogenicity score AnnotationHub resources. Illustrate in a vignette how to access those resources.'
+
diff --git a/recipes/bioconductor-alphamissense.v2023.hg38/post-link.sh b/recipes/bioconductor-alphamissense.v2023.hg38/post-link.sh
new file mode 100644
index 0000000000000..7709b6ee909c5
--- /dev/null
+++ b/recipes/bioconductor-alphamissense.v2023.hg38/post-link.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+installBiocDataPackage.sh "alphamissense.v2023.hg38-3.18.2"
diff --git a/recipes/bioconductor-alphamissense.v2023.hg38/pre-unlink.sh b/recipes/bioconductor-alphamissense.v2023.hg38/pre-unlink.sh
new file mode 100644
index 0000000000000..40728685a22f9
--- /dev/null
+++ b/recipes/bioconductor-alphamissense.v2023.hg38/pre-unlink.sh
@@ -0,0 +1 @@
+R CMD REMOVE --library=$PREFIX/lib/R/library/ AlphaMissense.v2023.hg38
diff --git a/recipes/bioconductor-alpinedata/meta.yaml b/recipes/bioconductor-alpinedata/meta.yaml
index 513dca99acc28..d1b1d2ca09aad 100644
--- a/recipes/bioconductor-alpinedata/meta.yaml
+++ b/recipes/bioconductor-alpinedata/meta.yaml
@@ -31,7 +31,7 @@ requirements:
     - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - bioconductor-data-packages >=20230706
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-alpsnmr/meta.yaml b/recipes/bioconductor-alpsnmr/meta.yaml
index cf21c958eebb1..6ae5496aa23be 100644
--- a/recipes/bioconductor-alpsnmr/meta.yaml
+++ b/recipes/bioconductor-alpsnmr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "4.2.0" %}
+{% set version = "4.4.0" %}
 {% set name = "AlpsNMR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8238f13c688c0a53bf17b60b321ca80f
+  md5: 938d77895e6337a35d98b6a57fa90303
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-alpsnmr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, ChemoSpec, cowplot, curl, DT (>= 0.5), GGally (>= 1.4.0), ggrepel (>= 0.8.0), gridExtra, knitr, plotly (>= 4.7.1), progressr, SummarizedExperiment, S4Vectors, testthat (>= 2.0.0), writexl (>= 1.0), zip (>= 2.0.4)
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-mixomics >=6.24.0,<6.25.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-mixomics >=6.26.0,<6.27.0'
     - r-base
     - 'r-baseline >=1.2-1'
     - r-cli
@@ -50,8 +51,8 @@ requirements:
     - r-tidyselect
     - 'r-vctrs >=0.3.0'
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-mixomics >=6.24.0,<6.25.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-mixomics >=6.26.0,<6.27.0'
     - r-base
     - 'r-baseline >=1.2-1'
     - r-cli
diff --git a/recipes/bioconductor-altcdfenvs/meta.yaml b/recipes/bioconductor-altcdfenvs/meta.yaml
index e5dc218de4db5..2f56521289f0e 100644
--- a/recipes/bioconductor-altcdfenvs/meta.yaml
+++ b/recipes/bioconductor-altcdfenvs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.62.0" %}
+{% set version = "2.64.0" %}
 {% set name = "altcdfenvs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,32 +11,33 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 8a3985abeef481d9886b0f0f566bf5e5
+  md5: 8bd83d29c11857ae73a4046289748f90
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-altcdfenvs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: plasmodiumanophelescdf, hgu95acdf, hgu133aprobe, hgu133a.db, hgu133acdf, Rgraphviz, RColorBrewer
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-hypergraph >=1.72.0,<1.73.0'
-    - 'bioconductor-makecdfenv >=1.76.0,<1.77.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-hypergraph >=1.74.0,<1.75.0'
+    - 'bioconductor-makecdfenv >=1.78.0,<1.79.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-hypergraph >=1.72.0,<1.73.0'
-    - 'bioconductor-makecdfenv >=1.76.0,<1.77.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-hypergraph >=1.74.0,<1.75.0'
+    - 'bioconductor-makecdfenv >=1.78.0,<1.79.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-alternativesplicingevents.hg19/meta.yaml b/recipes/bioconductor-alternativesplicingevents.hg19/meta.yaml
index 35216c97bee60..7d1ab3e0251b4 100644
--- a/recipes/bioconductor-alternativesplicingevents.hg19/meta.yaml
+++ b/recipes/bioconductor-alternativesplicingevents.hg19/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.1.0" %}
 {% set name = "alternativeSplicingEvents.hg19" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: b1acae776c9e9c5d961cf4884cadc58f
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-alternativesplicingevents.hg19", max_pin="x.x") }}'
   noarch: generic
 # Suggests: data.frame, dplyr, GenomicRanges, S4Vectors
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-alternativesplicingevents.hg38/meta.yaml b/recipes/bioconductor-alternativesplicingevents.hg38/meta.yaml
index d722f96d8bb48..30e73e4117234 100644
--- a/recipes/bioconductor-alternativesplicingevents.hg38/meta.yaml
+++ b/recipes/bioconductor-alternativesplicingevents.hg38/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.1.0" %}
 {% set name = "alternativeSplicingEvents.hg38" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 8d49710eebd62fb15a48cab252ff3eca
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-alternativesplicingevents.hg38", max_pin="x.x") }}'
   noarch: generic
 # Suggests: dplyr, GenomicRanges, S4Vectors
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-amaretto/meta.yaml b/recipes/bioconductor-amaretto/meta.yaml
index e6ac5fa2df802..687714cb9991a 100644
--- a/recipes/bioconductor-amaretto/meta.yaml
+++ b/recipes/bioconductor-amaretto/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "AMARETTO" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 221ee4ff61c9784ce231a2632ff9d860
+  md5: d6b16e06e3eb15ba4cac645265a43db1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-amaretto", max_pin="x.x") }}'
 # Suggests: testthat, MASS, knitr, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-curatedtcgadata >=1.22.0,<1.23.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-curatedtcgadata >=1.24.0,<1.25.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
     - r-base
     - 'r-callr >=3.0.0.9001'
     - r-circlize
@@ -48,12 +49,12 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-curatedtcgadata >=1.22.0,<1.23.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-curatedtcgadata >=1.24.0,<1.25.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
     - r-base
     - 'r-callr >=3.0.0.9001'
     - r-circlize
diff --git a/recipes/bioconductor-amountain/meta.yaml b/recipes/bioconductor-amountain/meta.yaml
index 16cb11a74a7a2..dd5d22ebd6e60 100644
--- a/recipes/bioconductor-amountain/meta.yaml
+++ b/recipes/bioconductor-amountain/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "AMOUNTAIN" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5d999f893262716e598b8816f9d585b7
+  md5: acf007b4bceaa196843cbcf221b762ba
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-amountain", max_pin="x.x") }}'
 # Suggests: BiocStyle, qgraph, knitr, rmarkdown
 # SystemRequirements: gsl
 requirements:
@@ -41,6 +42,8 @@ about:
   description: 'A pure data-driven gene network, weighted gene co-expression network (WGCN) could be constructed only from expression profile. Different layers in such networks may represent different time points, multiple conditions or various species. AMOUNTAIN aims to search active modules in multi-layer WGCN using a continuous optimization approach.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:amountain
     - doi:10.1101/056952
diff --git a/recipes/bioconductor-ampaffyexample/meta.yaml b/recipes/bioconductor-ampaffyexample/meta.yaml
index ca79fef896674..a4124743b758b 100644
--- a/recipes/bioconductor-ampaffyexample/meta.yaml
+++ b/recipes/bioconductor-ampaffyexample/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "AmpAffyExample" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a8863d31491bb756d0f630d09c012904
+  md5: 3277d6d26f145ddbb45c3808273cd150
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ampaffyexample", max_pin="x.x") }}'
   noarch: generic
 # Suggests: hgu133acdf
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ampaffyexample/post-link.sh b/recipes/bioconductor-ampaffyexample/post-link.sh
index 9c4b6ba62ddf7..2d12c440e0cea 100644
--- a/recipes/bioconductor-ampaffyexample/post-link.sh
+++ b/recipes/bioconductor-ampaffyexample/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "ampaffyexample-1.40.0"
+installBiocDataPackage.sh "ampaffyexample-1.42.0"
diff --git a/recipes/bioconductor-amplican/meta.yaml b/recipes/bioconductor-amplican/meta.yaml
index 1cf3fc17c68a4..80fb494e2eb87 100644
--- a/recipes/bioconductor-amplican/meta.yaml
+++ b/recipes/bioconductor-amplican/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.1" %}
+{% set version = "1.24.0" %}
 {% set name = "amplican" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 7cc66936261be4fa00c6cee261cce6ab
+  md5: 73fd9acdf5066ee76b1157068151f1f4
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-amplican", max_pin="x.x") }}'
 # Suggests: testthat, BiocStyle, GenomicAlignments
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - 'r-cluster >=2.1.4'
     - 'r-data.table >=1.10.4-3'
@@ -46,14 +47,14 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - 'r-cluster >=2.1.4'
     - 'r-data.table >=1.10.4-3'
@@ -78,8 +79,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-3
+  license: GPL-3.0-only
   summary: 'Automated analysis of CRISPR experiments'
   description: '`amplican` performs alignment of the amplicon reads, normalizes gathered data, calculates multiple statistics (e.g. cut rates, frameshifts) and presents results in form of aggregated reports. Data and statistics can be broken down by experiments, barcodes, user defined groups, guides and amplicons allowing for quick identification of potential problems.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name }}
diff --git a/recipes/bioconductor-anaquin/meta.yaml b/recipes/bioconductor-anaquin/meta.yaml
index 0510b163517c6..aa5132a62ebf8 100644
--- a/recipes/bioconductor-anaquin/meta.yaml
+++ b/recipes/bioconductor-anaquin/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.24.0" %}
+{% set version = "2.26.0" %}
 {% set name = "Anaquin" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7dbfecc409b693298ad398782947d682
+  md5: a0b480fdac1e56d9b308c2c23518b4a0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-anaquin", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, rmarkdown
 requirements:
   host:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
     - 'r-ggplot2 >=2.2.0'
     - r-knitr
@@ -30,8 +31,8 @@ requirements:
     - r-plyr
     - r-rocr
   run:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
     - 'r-ggplot2 >=2.2.0'
     - r-knitr
diff --git a/recipes/bioconductor-ancombc/meta.yaml b/recipes/bioconductor-ancombc/meta.yaml
index bf379d0df9d84..25c2d9638dbc9 100644
--- a/recipes/bioconductor-ancombc/meta.yaml
+++ b/recipes/bioconductor-ancombc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.2.0" %}
+{% set version = "2.4.0" %}
 {% set name = "ANCOMBC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,67 +11,60 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 877867a31ab16c43bbb1eab0b4a92bf1
+  md5: 42059f62faa03e818d0cd15b7bcf0094
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ancombc", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr, rmarkdown, testthat, DT, caret, microbiome, tidyverse
+# Suggests: dplyr, knitr, rmarkdown, testthat, DT, tidyr, tidyverse, microbiome, magrittr
 requirements:
   host:
-    - 'bioconductor-mia >=1.8.0,<1.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-treesummarizedexperiment >=2.8.0,<2.9.0'
+    - 'bioconductor-mia >=1.10.0,<1.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-treesummarizedexperiment >=2.10.0,<2.11.0'
     - r-base
     - r-cvxr
     - r-desctools
     - r-doparallel
     - r-dorng
-    - r-dplyr
-    - r-emmeans
     - r-energy
     - r-foreach
+    - r-gtools
     - r-hmisc
     - r-lme4
     - r-lmertest
-    - r-magrittr
     - r-mass
+    - r-matrix
+    - r-multcomp
     - r-nloptr
     - r-rdpack
-    - r-rlang
-    - r-rngtools
-    - r-tibble
-    - r-tidyr
   run:
-    - 'bioconductor-mia >=1.8.0,<1.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-treesummarizedexperiment >=2.8.0,<2.9.0'
+    - 'bioconductor-mia >=1.10.0,<1.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-treesummarizedexperiment >=2.10.0,<2.11.0'
     - r-base
     - r-cvxr
     - r-desctools
     - r-doparallel
     - r-dorng
-    - r-dplyr
-    - r-emmeans
     - r-energy
     - r-foreach
+    - r-gtools
     - r-hmisc
     - r-lme4
     - r-lmertest
-    - r-magrittr
     - r-mass
+    - r-matrix
+    - r-multcomp
     - r-nloptr
     - r-rdpack
-    - r-rlang
-    - r-rngtools
-    - r-tibble
-    - r-tidyr
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-aneufinder/meta.yaml b/recipes/bioconductor-aneufinder/meta.yaml
index ac862ee49cfa2..c0989067c743b 100644
--- a/recipes/bioconductor-aneufinder/meta.yaml
+++ b/recipes/bioconductor-aneufinder/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "AneuFinder" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a38ae17997909fe55521eeeb7927f47b
+  md5: 421efa90a617606c8db2c947d302c6b1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-aneufinder", max_pin="x.x") }}'
 # Suggests: knitr, BiocStyle, testthat, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm10
 requirements:
   host:
-    - 'bioconductor-aneufinderdata >=1.28.0,<1.29.0'
-    - 'bioconductor-bamsignals >=1.32.0,<1.33.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-aneufinderdata >=1.30.0,<1.31.0'
+    - 'bioconductor-bamsignals >=1.34.0,<1.35.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cowplot
     - r-doparallel
@@ -44,17 +45,17 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-aneufinderdata >=1.28.0,<1.29.0'
-    - 'bioconductor-bamsignals >=1.32.0,<1.33.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-aneufinderdata >=1.30.0,<1.31.0'
+    - 'bioconductor-bamsignals >=1.34.0,<1.35.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cowplot
     - r-doparallel
diff --git a/recipes/bioconductor-aneufinderdata/meta.yaml b/recipes/bioconductor-aneufinderdata/meta.yaml
index 7d2ecb6161957..7556ff6e34b2c 100644
--- a/recipes/bioconductor-aneufinderdata/meta.yaml
+++ b/recipes/bioconductor-aneufinderdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "AneuFinderData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 703ac91ee510ae00274632026f14a065
+  md5: 895230cd9b780dbb286a012f3c8777eb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-aneufinderdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-aneufinderdata/post-link.sh b/recipes/bioconductor-aneufinderdata/post-link.sh
index 2b407d94f6c62..25c0a75eda265 100644
--- a/recipes/bioconductor-aneufinderdata/post-link.sh
+++ b/recipes/bioconductor-aneufinderdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "aneufinderdata-1.28.0"
+installBiocDataPackage.sh "aneufinderdata-1.30.0"
diff --git a/recipes/bioconductor-annaffy/meta.yaml b/recipes/bioconductor-annaffy/meta.yaml
index 677262a02d32d..843f2adced6d4 100644
--- a/recipes/bioconductor-annaffy/meta.yaml
+++ b/recipes/bioconductor-annaffy/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "annaffy" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 007b32dfee6b9d9584ba4d723fb523f6
+  md5: a590578d3e87dbab236a5531f0a5bce0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-annaffy", max_pin="x.x") }}'
   noarch: generic
 # Suggests: hgu95av2.db, multtest, tcltk
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
     - r-base
     - r-biocmanager
     - r-dbi
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
     - r-base
     - r-biocmanager
     - r-dbi
diff --git a/recipes/bioconductor-annmap/meta.yaml b/recipes/bioconductor-annmap/meta.yaml
index 68d79ae0b90f4..54d7f473f442b 100644
--- a/recipes/bioconductor-annmap/meta.yaml
+++ b/recipes/bioconductor-annmap/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "annmap" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 414b7e6fe75e48d8e3a612a51cb29d38
+  md5: 4e793a7c30de8248f566e7c14bf3fa90
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-annmap", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, rjson, Gviz
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-dbi
     - r-digest
     - r-lattice
     - 'r-rmysql >=0.6-0'
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-dbi
     - r-digest
diff --git a/recipes/bioconductor-annotate/meta.yaml b/recipes/bioconductor-annotate/meta.yaml
index ceefbf3fa9dae..0e27f09050df3 100644
--- a/recipes/bioconductor-annotate/meta.yaml
+++ b/recipes/bioconductor-annotate/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.78.0" %}
+{% set version = "1.80.0" %}
 {% set name = "annotate" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: fb5187ca7fdd4e1be47a470d528397df
+  md5: 04d25cadc03401556364f8ca9c3b2a61
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-annotate", max_pin="x.x") }}'
   noarch: generic
 # Suggests: hgu95av2.db, genefilter, Biostrings (>= 2.25.10), IRanges, rae230a.db, rae230aprobe, tkWidgets, GO.db, org.Hs.eg.db, org.Mm.eg.db, humanCHRLOC, Rgraphviz, RUnit,
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-dbi
     - r-httr
     - r-xml
     - r-xtable
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-dbi
     - r-httr
diff --git a/recipes/bioconductor-annotationdbi/meta.yaml b/recipes/bioconductor-annotationdbi/meta.yaml
index df46ea4a23f46..092d59455da59 100644
--- a/recipes/bioconductor-annotationdbi/meta.yaml
+++ b/recipes/bioconductor-annotationdbi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.62.2" %}
+{% set version = "1.64.1" %}
 {% set name = "AnnotationDbi" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e12679a9cb4533c5f24fc27458b8d8e6
+  md5: 965300db0b7a8b527ed3eb00fdd6d10f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-annotationdbi", max_pin="x.x") }}'
   noarch: generic
 # Suggests: utils, hgu95av2.db, GO.db, org.Sc.sgd.db, org.At.tair.db, RUnit, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, reactome.db, AnnotationForge, graph, EnsDb.Hsapiens.v75, BiocStyle, knitr
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dbi
     - r-rsqlite
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dbi
     - r-rsqlite
diff --git a/recipes/bioconductor-annotationfilter/meta.yaml b/recipes/bioconductor-annotationfilter/meta.yaml
index 3d6de9ccd9af2..72a8de6d1d3e4 100644
--- a/recipes/bioconductor-annotationfilter/meta.yaml
+++ b/recipes/bioconductor-annotationfilter/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "AnnotationFilter" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2838a3b75e2f41d27325908586729c4f
+  md5: 512eececc247990236fd09aa1fc46966
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-annotationfilter", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, testthat, RSQLite, org.Hs.eg.db, rmarkdown
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-lazyeval
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-lazyeval
 test:
diff --git a/recipes/bioconductor-annotationforge/meta.yaml b/recipes/bioconductor-annotationforge/meta.yaml
index 4aedb25498143..0ff1070736cfa 100644
--- a/recipes/bioconductor-annotationforge/meta.yaml
+++ b/recipes/bioconductor-annotationforge/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.2" %}
+{% set version = "1.44.0" %}
 {% set name = "AnnotationForge" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6ed5d42ecb97e5ab9123d078ff766c66
+  md5: 4aa011cdbdc464bbfe1542ec418e7749
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-annotationforge", max_pin="x.x") }}'
   noarch: generic
 # Suggests: biomaRt, httr, GenomeInfoDb (>= 1.17.1), Biostrings, affy, hgu95av2.db, human.db0, org.Hs.eg.db, Homo.sapiens, GO.db, markdown, BiocStyle, knitr, BiocManager, BiocFileCache, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dbi
     - r-rcurl
     - r-rsqlite
     - r-xml
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dbi
     - r-rcurl
diff --git a/recipes/bioconductor-annotationhub/meta.yaml b/recipes/bioconductor-annotationhub/meta.yaml
index 98ee765be3f0b..06f8f353cee10 100644
--- a/recipes/bioconductor-annotationhub/meta.yaml
+++ b/recipes/bioconductor-annotationhub/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.8.0" %}
+{% set version = "3.10.0" %}
 {% set name = "AnnotationHub" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 458bb90d5680afe0b2e6b7c75ce37f16
+  md5: 9dcc8ea705c0e7f8ac8e9af262de876f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-annotationhub", max_pin="x.x") }}'
   noarch: generic
-# Suggests: IRanges, GenomicRanges, GenomeInfoDb, VariantAnnotation, Rsamtools, rtracklayer, BiocStyle, knitr, AnnotationForge, rBiopaxParser, RUnit, GenomicFeatures, MSnbase, mzR, Biostrings, SummarizedExperiment, ExperimentHub, gdsfmt, rmarkdown, HubPub
+# Suggests: IRanges, GenomicRanges, GenomeInfoDb, VariantAnnotation, Rsamtools, rtracklayer, BiocStyle, knitr, AnnotationForge, rBiopaxParser, RUnit, GenomicFeatures, MSnbase, mzR, Biostrings, CompoundDb, keras, ensembldb, SummarizedExperiment, ExperimentHub, gdsfmt, rmarkdown, HubPub
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocversion >=3.17.0,<3.18.0'
-    - 'bioconductor-interactivedisplaybase >=1.38.0,<1.39.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocversion >=3.18.0,<3.19.0'
+    - 'bioconductor-interactivedisplaybase >=1.40.0,<1.41.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-biocmanager
     - r-curl
@@ -36,12 +37,12 @@ requirements:
     - r-rsqlite
     - r-yaml
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocversion >=3.17.0,<3.18.0'
-    - 'bioconductor-interactivedisplaybase >=1.38.0,<1.39.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocversion >=3.18.0,<3.19.0'
+    - 'bioconductor-interactivedisplaybase >=1.40.0,<1.41.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-biocmanager
     - r-curl
diff --git a/recipes/bioconductor-annotationhubdata/meta.yaml b/recipes/bioconductor-annotationhubdata/meta.yaml
index 6ab68144f4d88..712e0387d8f7f 100644
--- a/recipes/bioconductor-annotationhubdata/meta.yaml
+++ b/recipes/bioconductor-annotationhubdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "AnnotationHubData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d924856924548dfcd2814cb0247c60a7
+  md5: 0c08db64bda6298ca0d673b190a90dee
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-annotationhubdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, knitr, BiocStyle, grasp2db, GenomeInfoDbData, rmarkdown, HubPub
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationforge >=1.42.0,<1.43.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-bioccheck >=1.36.0,<1.37.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocviews >=1.68.0,<1.69.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-organismdbi >=1.42.0,<1.43.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationforge >=1.44.0,<1.45.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-bioccheck >=1.38.0,<1.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocviews >=1.70.0,<1.71.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-organismdbi >=1.44.0,<1.45.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-biocmanager
     - r-dbi
@@ -47,23 +48,23 @@ requirements:
     - r-rsqlite
     - r-xml
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationforge >=1.42.0,<1.43.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-bioccheck >=1.36.0,<1.37.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocviews >=1.68.0,<1.69.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-organismdbi >=1.42.0,<1.43.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationforge >=1.44.0,<1.45.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-bioccheck >=1.38.0,<1.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocviews >=1.70.0,<1.71.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-organismdbi >=1.44.0,<1.45.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-biocmanager
     - r-dbi
diff --git a/recipes/bioconductor-annotationtools/meta.yaml b/recipes/bioconductor-annotationtools/meta.yaml
index a4fadf6af1516..e72898bc9a532 100644
--- a/recipes/bioconductor-annotationtools/meta.yaml
+++ b/recipes/bioconductor-annotationtools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.74.0" %}
+{% set version = "1.76.0" %}
 {% set name = "annotationTools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3c04239bb8a757f32c045586db12761c
+  md5: 3b0a795d7898c0b6112ed596f9d2de27
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-annotationtools", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-annotatr/meta.yaml b/recipes/bioconductor-annotatr/meta.yaml
index 8165e5c27a448..a2faf6e30caba 100644
--- a/recipes/bioconductor-annotatr/meta.yaml
+++ b/recipes/bioconductor-annotatr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "annotatr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,40 +11,41 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 24fa1da45dd9a0e0af22f4d358970ec6
+  md5: 433372717ce78a1ae23a91a80601f2b6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-annotatr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, devtools, knitr, org.Dm.eg.db, org.Gg.eg.db, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, rmarkdown, roxygen2, testthat, TxDb.Dmelanogaster.UCSC.dm3.ensGene, TxDb.Dmelanogaster.UCSC.dm6.ensGene, TxDb.Ggallus.UCSC.galGal5.refGene, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Mmusculus.UCSC.mm9.knownGene, TxDb.Mmusculus.UCSC.mm10.knownGene, TxDb.Rnorvegicus.UCSC.rn4.ensGene, TxDb.Rnorvegicus.UCSC.rn5.refGene, TxDb.Rnorvegicus.UCSC.rn6.refGene
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-regioner >=1.32.0,<1.33.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-regioner >=1.34.0,<1.35.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-ggplot2
     - r-readr
     - r-reshape2
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-regioner >=1.32.0,<1.33.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-regioner >=1.34.0,<1.35.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-anopheles.db0/meta.yaml b/recipes/bioconductor-anopheles.db0/meta.yaml
index 9b13d37a1e2aa..df8ab3def33f1 100644
--- a/recipes/bioconductor-anopheles.db0/meta.yaml
+++ b/recipes/bioconductor-anopheles.db0/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "anopheles.db0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d26110289d806c4d1bd6e039c5873100
+  md5: cd7b03fffb4ffd0cf0877a55a3636d93
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-anopheles.db0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-anopheles.db0/post-link.sh b/recipes/bioconductor-anopheles.db0/post-link.sh
index fb5a134da283e..9febec5c61f5f 100644
--- a/recipes/bioconductor-anopheles.db0/post-link.sh
+++ b/recipes/bioconductor-anopheles.db0/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "anopheles.db0-3.17.0"
+installBiocDataPackage.sh "anopheles.db0-3.18.0"
diff --git a/recipes/bioconductor-anota/meta.yaml b/recipes/bioconductor-anota/meta.yaml
index 51d07f713c147..eabf4ab9ea756 100644
--- a/recipes/bioconductor-anota/meta.yaml
+++ b/recipes/bioconductor-anota/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "anota" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 043ed2d07c85599feb160ff62e65369a
+  md5: dc1461d1c43ffdfedc8e0f49a2b4ac6b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-anota", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
   run:
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-anota2seq/meta.yaml b/recipes/bioconductor-anota2seq/meta.yaml
index dccb1f285651f..295afda5304e6 100644
--- a/recipes/bioconductor-anota2seq/meta.yaml
+++ b/recipes/bioconductor-anota2seq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "anota2seq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 67cf3d06cd925a69936cf6b784da0a7a
+  md5: c14a5f4c2cd7c51fbc9c7ecd844ad0be
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-anota2seq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle,knitr
 requirements:
   host:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-rcolorbrewer
   run:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-rcolorbrewer
 test:
diff --git a/recipes/bioconductor-antiprofiles/meta.yaml b/recipes/bioconductor-antiprofiles/meta.yaml
index c65773a4a3397..b885a849653a4 100644
--- a/recipes/bioconductor-antiprofiles/meta.yaml
+++ b/recipes/bioconductor-antiprofiles/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "antiProfiles" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 62ed7ee12254e32c8cb6c5820b53b230
+  md5: 80b3c1174d02d3b00b3ebf5d14a75b90
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-antiprofiles", max_pin="x.x") }}'
   noarch: generic
 # Suggests: antiProfilesData, RColorBrewer
 requirements:
diff --git a/recipes/bioconductor-antiprofilesdata/meta.yaml b/recipes/bioconductor-antiprofilesdata/meta.yaml
index a2787e87c261b..4803d0b345804 100644
--- a/recipes/bioconductor-antiprofilesdata/meta.yaml
+++ b/recipes/bioconductor-antiprofilesdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "antiProfilesData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d5eab300113940ec702cdd00de617761
+  md5: dc40c00fb296b31cf65369e801d6f2f8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-antiprofilesdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: frma, GEOquery, GEOmetadb
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-antiprofilesdata/post-link.sh b/recipes/bioconductor-antiprofilesdata/post-link.sh
index cf588366537b0..7de926d0707ed 100644
--- a/recipes/bioconductor-antiprofilesdata/post-link.sh
+++ b/recipes/bioconductor-antiprofilesdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "antiprofilesdata-1.36.0"
+installBiocDataPackage.sh "antiprofilesdata-1.38.0"
diff --git a/recipes/bioconductor-anvil/meta.yaml b/recipes/bioconductor-anvil/meta.yaml
index b7d5c34b2696c..27898e91b994e 100644
--- a/recipes/bioconductor-anvil/meta.yaml
+++ b/recipes/bioconductor-anvil/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.3" %}
+{% set version = "1.14.0" %}
 {% set name = "AnVIL" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c773fdc6581ece77262038390b7ffba0
+  md5: 960614983c195ba60dca0a63a0fbf352
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-anvil", max_pin="x.x") }}'
   noarch: generic
 # Suggests: parallel, knitr, rmarkdown, testthat, withr, readr, BiocStyle, devtools
 requirements:
diff --git a/recipes/bioconductor-anvilbilling/meta.yaml b/recipes/bioconductor-anvilbilling/meta.yaml
index 86334e0faaadd..a68235d62783f 100644
--- a/recipes/bioconductor-anvilbilling/meta.yaml
+++ b/recipes/bioconductor-anvilbilling/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "AnVILBilling" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ad02ff4c8be1fdf4e48b493b55fa4c8b
+  md5: 9e6cd90c2e4e31067dfab860b5130cf8
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-anvilbilling", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, BiocStyle, rmarkdown
 requirements:
diff --git a/recipes/bioconductor-anvilpublish/meta.yaml b/recipes/bioconductor-anvilpublish/meta.yaml
index a74f9837912ea..60a805d1f9759 100644
--- a/recipes/bioconductor-anvilpublish/meta.yaml
+++ b/recipes/bioconductor-anvilpublish/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "AnVILPublish" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4ce3d510992dfb125c6fac3adfc84a42
+  md5: bbd5bd8ab36e2563e7b4b01e2b11295d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-anvilpublish", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, BiocManager, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-anvil >=1.12.0,<1.13.0'
+    - 'bioconductor-anvil >=1.14.0,<1.15.0'
     - r-base
     - r-httr
     - r-jsonlite
@@ -30,7 +31,7 @@ requirements:
     - r-whisker
     - r-yaml
   run:
-    - 'bioconductor-anvil >=1.12.0,<1.13.0'
+    - 'bioconductor-anvil >=1.14.0,<1.15.0'
     - r-base
     - r-httr
     - r-jsonlite
diff --git a/recipes/bioconductor-anvilworkflow/meta.yaml b/recipes/bioconductor-anvilworkflow/meta.yaml
index 39e81f1c3b85e..de05da6b61a56 100644
--- a/recipes/bioconductor-anvilworkflow/meta.yaml
+++ b/recipes/bioconductor-anvilworkflow/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.1" %}
+{% set version = "1.2.0" %}
 {% set name = "AnVILWorkflow" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 351e6afcc0568d82cb69f4fa6efb67ee
+  md5: af890e3cea3c42346ec887603ba12e40
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-anvilworkflow", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, tibble, BiocStyle
 requirements:
   host:
-    - 'bioconductor-anvil >=1.12.0,<1.13.0'
+    - 'bioconductor-anvil >=1.14.0,<1.15.0'
     - r-base
     - r-httr
     - r-jsonlite
   run:
-    - 'bioconductor-anvil >=1.12.0,<1.13.0'
+    - 'bioconductor-anvil >=1.14.0,<1.15.0'
     - r-base
     - r-httr
     - r-jsonlite
diff --git a/recipes/bioconductor-apalyzer/meta.yaml b/recipes/bioconductor-apalyzer/meta.yaml
index 04317074d9d00..744b59ec3073e 100644
--- a/recipes/bioconductor-apalyzer/meta.yaml
+++ b/recipes/bioconductor-apalyzer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "APAlyzer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 90cb4679a0915479395a3955c7c75cbb
+  md5: 88aebb2681d07ad9bc8b7e3499339d51
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-apalyzer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, org.Mm.eg.db, AnnotationDbi, TBX20BamSubset, testthat, pasillaBamSubset
 requirements:
   host:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hybridmtest >=1.44.0,<1.45.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rsubread >=2.14.0,<2.15.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hybridmtest >=1.46.0,<1.47.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rsubread >=2.16.0,<2.17.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -38,16 +39,16 @@ requirements:
     - r-repmis
     - r-tidyr
   run:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hybridmtest >=1.44.0,<1.45.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rsubread >=2.14.0,<2.15.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hybridmtest >=1.46.0,<1.47.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rsubread >=2.16.0,<2.17.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-apcomplex/meta.yaml b/recipes/bioconductor-apcomplex/meta.yaml
index 53e5b265bec60..78e15d595cd68 100644
--- a/recipes/bioconductor-apcomplex/meta.yaml
+++ b/recipes/bioconductor-apcomplex/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.66.0" %}
+{% set version = "2.68.0" %}
 {% set name = "apComplex" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 51e69711964aab117703064718f5fbf5
+  md5: 03418539dfa5904bf05f430718789fde
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-apcomplex", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-org.sc.sgd.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-org.sc.sgd.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
   run:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-org.sc.sgd.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-org.sc.sgd.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-apeglm/meta.yaml b/recipes/bioconductor-apeglm/meta.yaml
index 938a77dfbe3cb..78fd5a84b9c6b 100644
--- a/recipes/bioconductor-apeglm/meta.yaml
+++ b/recipes/bioconductor-apeglm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.1" %}
+{% set version = "1.24.0" %}
 {% set name = "apeglm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 79070e75b8ea4968e63f8e17afa73d38
+  md5: 0f8e64bdd8eec2566238fdc487afabb8
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-apeglm", max_pin="x.x") }}'
 # Suggests: DESeq2, airway, knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-emdbook
     - r-rcpp
@@ -30,8 +31,8 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-emdbook
     - r-rcpp
@@ -51,6 +52,8 @@ about:
   description: 'apeglm provides Bayesian shrinkage estimators for effect sizes for a variety of GLM models, using approximation of the posterior for individual coefficients.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2'
 extra:
+  additional-platforms:
+    - linux-aarch64
   parent_recipe:
     name: bioconductor-apeglm
     path: recipes/bioconductor-apeglm
diff --git a/recipes/bioconductor-apl/meta.yaml b/recipes/bioconductor-apl/meta.yaml
index cc417acd554cd..3cefe27602f15 100644
--- a/recipes/bioconductor-apl/meta.yaml
+++ b/recipes/bioconductor-apl/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "APL" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 41f52a6b448fbb963f3ef02f3e9f319b
+  md5: 725b38bc042e6b6fd349aac0ff3d471c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-apl", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, scRNAseq, scater, scran, testthat
 # SystemRequirements: python, pytorch, numpy
 requirements:
   host:
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - r-ggplot2
     - r-ggrepel
@@ -37,11 +38,11 @@ requirements:
     - r-seurat
     - r-viridislite
   run:
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - r-ggplot2
     - r-ggrepel
diff --git a/recipes/bioconductor-appreci8r/meta.yaml b/recipes/bioconductor-appreci8r/meta.yaml
index b3a99c97d31a0..fdbd9dac892ba 100644
--- a/recipes/bioconductor-appreci8r/meta.yaml
+++ b/recipes/bioconductor-appreci8r/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.1" %}
 {% set name = "appreci8R" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,73 +11,72 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 47501e7afbbe98a31b837ea71d094727
+  md5: 9165459dd4a98c9645928c87b934c081
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-appreci8r", max_pin="x.x") }}'
   noarch: generic
-# Suggests: GO.db, org.Hs.eg.db
+# Suggests: GO.db, org.Hs.eg.db, utils
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
-    - 'bioconductor-cosmic.67 >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
+    - 'bioconductor-cosmic.67 >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
     - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - 'bioconductor-mafdb.1kgenomes.phase3.hs37d5 >=3.10.0,<3.11.0'
     - 'bioconductor-mafdb.exac.r1.0.hs37d5 >=3.10.0,<3.11.0'
     - 'bioconductor-mafdb.gnomadex.r2.1.hs37d5 >=3.10.0,<3.11.0'
     - 'bioconductor-polyphen.hsapiens.dbsnp131 >=1.0.0,<1.1.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'bioconductor-sift.hsapiens.dbsnp137 >=1.0.0,<1.1.0'
     - 'bioconductor-snplocs.hsapiens.dbsnp144.grch37 >=0.99.0,<0.100.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - 'bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch37 >=0.99.0,<0.100.0'
     - r-base
     - r-dt
     - r-openxlsx
     - r-rentrez
-    - r-rsnps
     - r-seqinr
     - r-shiny
     - r-shinyjs
     - r-stringr
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
-    - 'bioconductor-cosmic.67 >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
+    - 'bioconductor-cosmic.67 >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
     - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - 'bioconductor-mafdb.1kgenomes.phase3.hs37d5 >=3.10.0,<3.11.0'
     - 'bioconductor-mafdb.exac.r1.0.hs37d5 >=3.10.0,<3.11.0'
     - 'bioconductor-mafdb.gnomadex.r2.1.hs37d5 >=3.10.0,<3.11.0'
     - 'bioconductor-polyphen.hsapiens.dbsnp131 >=1.0.0,<1.1.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'bioconductor-sift.hsapiens.dbsnp137 >=1.0.0,<1.1.0'
     - 'bioconductor-snplocs.hsapiens.dbsnp144.grch37 >=0.99.0,<0.100.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - 'bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch37 >=0.99.0,<0.100.0'
     - r-base
     - r-dt
     - r-openxlsx
     - r-rentrez
-    - r-rsnps
     - r-seqinr
     - r-shiny
     - r-shinyjs
diff --git a/recipes/bioconductor-arabidopsis.db0/meta.yaml b/recipes/bioconductor-arabidopsis.db0/meta.yaml
index 59d8ccdd4d9fd..a353a6fe036e9 100644
--- a/recipes/bioconductor-arabidopsis.db0/meta.yaml
+++ b/recipes/bioconductor-arabidopsis.db0/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "arabidopsis.db0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 773844428cd90716c8e32f942328618d
+  md5: 5896dbae0f9f8fdc87712dba0bb6cbd1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-arabidopsis.db0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-arabidopsis.db0/post-link.sh b/recipes/bioconductor-arabidopsis.db0/post-link.sh
index ff530db18e421..45f1d087e4fb9 100644
--- a/recipes/bioconductor-arabidopsis.db0/post-link.sh
+++ b/recipes/bioconductor-arabidopsis.db0/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "arabidopsis.db0-3.17.0"
+installBiocDataPackage.sh "arabidopsis.db0-3.18.0"
diff --git a/recipes/bioconductor-aracne.networks/meta.yaml b/recipes/bioconductor-aracne.networks/meta.yaml
index 4de189b8200a4..a1725ffbcf2bf 100644
--- a/recipes/bioconductor-aracne.networks/meta.yaml
+++ b/recipes/bioconductor-aracne.networks/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "aracne.networks" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 766b50311db15b7c36dffbb945277382
+  md5: 42657d0acf4c1ba54aa2057fa4525d51
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-aracne.networks", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-viper >=1.34.0,<1.35.0'
+    - 'bioconductor-viper >=1.36.0,<1.37.0'
     - r-base
   run:
-    - 'bioconductor-viper >=1.34.0,<1.35.0'
+    - 'bioconductor-viper >=1.36.0,<1.37.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-aracne.networks/post-link.sh b/recipes/bioconductor-aracne.networks/post-link.sh
index 62f03eb5bec12..a25ee53fa9383 100644
--- a/recipes/bioconductor-aracne.networks/post-link.sh
+++ b/recipes/bioconductor-aracne.networks/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "aracne.networks-1.26.0"
+installBiocDataPackage.sh "aracne.networks-1.28.0"
diff --git a/recipes/bioconductor-aroma.light/meta.yaml b/recipes/bioconductor-aroma.light/meta.yaml
index cbb3a8373f6eb..30e404c5a01cf 100644
--- a/recipes/bioconductor-aroma.light/meta.yaml
+++ b/recipes/bioconductor-aroma.light/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.30.0" %}
+{% set version = "3.32.0" %}
 {% set name = "aroma.light" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 479f763a3001b487d9b3111d6505eece
+  md5: 07d98bcf8be950a16c1d6aaae375f17d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-aroma.light", max_pin="x.x") }}'
   noarch: generic
 # Suggests: princurve (>= 2.1.4)
 requirements:
diff --git a/recipes/bioconductor-arrayexpress/meta.yaml b/recipes/bioconductor-arrayexpress/meta.yaml
index eca4847f54ffb..6efa3dbf50684 100644
--- a/recipes/bioconductor-arrayexpress/meta.yaml
+++ b/recipes/bioconductor-arrayexpress/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.60.0" %}
+{% set version = "1.62.0" %}
 {% set name = "ArrayExpress" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9dc6f2a3298a96b6416d7b6cbacf59de
+  md5: 6232db8158e5ba9cde38da322b0c5163
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-arrayexpress", max_pin="x.x") }}'
   noarch: generic
 # Suggests: affy
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
     - r-base
     - r-httr
     - r-jsonlite
     - r-rlang
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
     - r-base
     - r-httr
     - r-jsonlite
diff --git a/recipes/bioconductor-arraymvout/meta.yaml b/recipes/bioconductor-arraymvout/meta.yaml
index 765e9efcc5abb..612d3124a7a6b 100644
--- a/recipes/bioconductor-arraymvout/meta.yaml
+++ b/recipes/bioconductor-arraymvout/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.58.0" %}
+{% set version = "1.60.0" %}
 {% set name = "arrayMvout" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 496faed8293a47944fe26efa75276598
+  md5: 7aa46c496dbe47218ea774cb02108800
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-arraymvout", max_pin="x.x") }}'
   noarch: generic
 # Suggests: MAQCsubset, mvoutData, lumiBarnes, affyPLM, affydata, hgu133atagcdf
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-affycontam >=1.58.0,<1.59.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
-    - 'bioconductor-mdqc >=1.62.0,<1.63.0'
-    - 'bioconductor-parody >=1.58.0,<1.59.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-affycontam >=1.60.0,<1.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
+    - 'bioconductor-mdqc >=1.64.0,<1.65.0'
+    - 'bioconductor-parody >=1.60.0,<1.61.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-affycontam >=1.58.0,<1.59.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
-    - 'bioconductor-mdqc >=1.62.0,<1.63.0'
-    - 'bioconductor-parody >=1.58.0,<1.59.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-affycontam >=1.60.0,<1.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
+    - 'bioconductor-mdqc >=1.64.0,<1.65.0'
+    - 'bioconductor-parody >=1.60.0,<1.61.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-arrayquality/meta.yaml b/recipes/bioconductor-arrayquality/meta.yaml
index 0429256522126..c3c33beb6b5c6 100644
--- a/recipes/bioconductor-arrayquality/meta.yaml
+++ b/recipes/bioconductor-arrayquality/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.78.0" %}
+{% set version = "1.80.0" %}
 {% set name = "arrayQuality" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 05fac545dc5122c38913b83e9788c06e
+  md5: 9d875e31dc2f51e4c476d1a13330ad18
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-arrayquality", max_pin="x.x") }}'
   noarch: generic
 # Suggests: mclust, MEEBOdata, HEEBOdata
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
     - r-gridbase
     - r-hexbin
     - r-rcolorbrewer
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
     - r-gridbase
     - r-hexbin
diff --git a/recipes/bioconductor-arrayqualitymetrics/meta.yaml b/recipes/bioconductor-arrayqualitymetrics/meta.yaml
index 4b809dc9ebc2a..46f59c2bc01a2 100644
--- a/recipes/bioconductor-arrayqualitymetrics/meta.yaml
+++ b/recipes/bioconductor-arrayqualitymetrics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.56.0" %}
+{% set version = "3.58.0" %}
 {% set name = "arrayQualityMetrics" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8d6e27fd09971235379b22a11ec9a0e8
+  md5: 65128c55b6181bdadb73d256e399091e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-arrayqualitymetrics", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ALLMLL, CCl4, BiocStyle, knitr
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-affyplm >=1.76.0,<1.77.0'
-    - 'bioconductor-beadarray >=2.50.0,<2.51.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-affyplm >=1.78.0,<1.79.0'
+    - 'bioconductor-beadarray >=2.52.0,<2.53.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-base
     - 'r-gridsvg >=1.4-3'
     - r-hmisc
@@ -39,13 +40,13 @@ requirements:
     - r-svglite
     - r-xml
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-affyplm >=1.76.0,<1.77.0'
-    - 'bioconductor-beadarray >=2.50.0,<2.51.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-affyplm >=1.78.0,<1.79.0'
+    - 'bioconductor-beadarray >=2.52.0,<2.53.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-base
     - 'r-gridsvg >=1.4-3'
     - r-hmisc
diff --git a/recipes/bioconductor-arrmdata/meta.yaml b/recipes/bioconductor-arrmdata/meta.yaml
index 3360d61788513..a7fe1357a1d0d 100644
--- a/recipes/bioconductor-arrmdata/meta.yaml
+++ b/recipes/bioconductor-arrmdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "ARRmData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d1a4ecc042b17945f8a02625fbfa97b5
+  md5: 95475f869b8ff3d6344c0f45f2e616c9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-arrmdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-arrmdata/post-link.sh b/recipes/bioconductor-arrmdata/post-link.sh
index ca315f09c39d6..92579cc4ac064 100644
--- a/recipes/bioconductor-arrmdata/post-link.sh
+++ b/recipes/bioconductor-arrmdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "arrmdata-1.36.0"
+installBiocDataPackage.sh "arrmdata-1.38.0"
diff --git a/recipes/bioconductor-arrmnormalization/meta.yaml b/recipes/bioconductor-arrmnormalization/meta.yaml
index 225d1b87b01ad..437968da022a4 100644
--- a/recipes/bioconductor-arrmnormalization/meta.yaml
+++ b/recipes/bioconductor-arrmnormalization/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "ARRmNormalization" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1331a6d43b42563841b7712441e0d14d
+  md5: a6223cb64b7077670d38fb437638e0fe
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-arrmnormalization", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-arrmdata >=1.36.0,<1.37.0'
+    - 'bioconductor-arrmdata >=1.38.0,<1.39.0'
     - r-base
   run:
-    - 'bioconductor-arrmdata >=1.36.0,<1.37.0'
+    - 'bioconductor-arrmdata >=1.38.0,<1.39.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-artms/meta.yaml b/recipes/bioconductor-artms/meta.yaml
index 0f79e21cd6bd9..25f17daed6675 100644
--- a/recipes/bioconductor-artms/meta.yaml
+++ b/recipes/bioconductor-artms/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "artMS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: de4a453a5d57a20ee95302254d866981
+  md5: d52a9405bcf6f4a3920ecb70be49c1d9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-artms", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, ComplexHeatmap, factoextra, FactoMineR, gProfileR, knitr, PerformanceAnalytics, org.Mm.eg.db, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-msstats >=4.8.0,<4.9.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-msstats >=4.10.0,<4.11.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - r-bit64
     - r-circlize
@@ -50,10 +51,10 @@ requirements:
     - r-venndiagram
     - r-yaml
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-msstats >=4.8.0,<4.9.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-msstats >=4.10.0,<4.11.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - r-bit64
     - r-circlize
diff --git a/recipes/bioconductor-asafe/meta.yaml b/recipes/bioconductor-asafe/meta.yaml
index 74c736c362256..46bae4e0a4f2d 100644
--- a/recipes/bioconductor-asafe/meta.yaml
+++ b/recipes/bioconductor-asafe/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "ASAFE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 02ac2aeccd6067529507ff1b46c0fdaf
+  md5: e054d986c3b6f2574c26498eaf6e4f7c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-asafe", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat
 requirements:
diff --git a/recipes/bioconductor-aseb/meta.yaml b/recipes/bioconductor-aseb/meta.yaml
index 0efab8d563af3..185e0ab4c1db4 100644
--- a/recipes/bioconductor-aseb/meta.yaml
+++ b/recipes/bioconductor-aseb/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.44.0" %}
+{% set version = "1.46.3" %}
 {% set name = "ASEB" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 205d8716d05f9046395de90b9d48cdc2
+  md5: 7e9312371523d44d7f1cb759af2d150e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-aseb", max_pin="x.x") }}'
 requirements:
   host:
     - r-base
diff --git a/recipes/bioconductor-asgsca/meta.yaml b/recipes/bioconductor-asgsca/meta.yaml
index 740cffa843961..2fd57fbdec08e 100644
--- a/recipes/bioconductor-asgsca/meta.yaml
+++ b/recipes/bioconductor-asgsca/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "ASGSCA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: db2fb611216db58fd5fa05720151ab2e
+  md5: c0e60b4fa228444ab7863044881fa8bb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-asgsca", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle
 requirements:
diff --git a/recipes/bioconductor-ashkenazimsonchr21/meta.yaml b/recipes/bioconductor-ashkenazimsonchr21/meta.yaml
index b4e1289ce168f..e111494e14c2a 100644
--- a/recipes/bioconductor-ashkenazimsonchr21/meta.yaml
+++ b/recipes/bioconductor-ashkenazimsonchr21/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "AshkenazimSonChr21" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6180e43108e29d9194ed93bc0f208124
+  md5: a4455fab1d47dcf8dc2411fec1066a2c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ashkenazimsonchr21", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, VariantAnnotation
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ashkenazimsonchr21/post-link.sh b/recipes/bioconductor-ashkenazimsonchr21/post-link.sh
index 27d6400da0ce0..20f8d2ad38a7e 100644
--- a/recipes/bioconductor-ashkenazimsonchr21/post-link.sh
+++ b/recipes/bioconductor-ashkenazimsonchr21/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "ashkenazimsonchr21-1.30.0"
+installBiocDataPackage.sh "ashkenazimsonchr21-1.32.0"
diff --git a/recipes/bioconductor-asics/meta.yaml b/recipes/bioconductor-asics/meta.yaml
index 52580c3dcf753..49a962cda7e85 100644
--- a/recipes/bioconductor-asics/meta.yaml
+++ b/recipes/bioconductor-asics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.16.0" %}
+{% set version = "2.18.0" %}
 {% set name = "ASICS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b7e6efa85c8bc0444a5cac2114338cff
+  md5: 526bfb1ebf38574a4914a434cd159769
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-asics", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, testthat, ASICSdata
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-pepsnmr >=1.18.0,<1.19.0'
-    - 'bioconductor-ropls >=1.32.0,<1.33.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-pepsnmr >=1.20.0,<1.21.0'
+    - 'bioconductor-ropls >=1.34.0,<1.35.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-glmnet
@@ -35,10 +36,10 @@ requirements:
     - r-quadprog
     - r-zoo
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-pepsnmr >=1.18.0,<1.19.0'
-    - 'bioconductor-ropls >=1.32.0,<1.33.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-pepsnmr >=1.20.0,<1.21.0'
+    - 'bioconductor-ropls >=1.34.0,<1.35.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-glmnet
diff --git a/recipes/bioconductor-asicsdata/meta.yaml b/recipes/bioconductor-asicsdata/meta.yaml
index 47f0f44eabcb9..6863b79647e76 100644
--- a/recipes/bioconductor-asicsdata/meta.yaml
+++ b/recipes/bioconductor-asicsdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "ASICSdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 46a4e15b37bd49b3cd5693c1a900b581
+  md5: afb117c0db733e23239bf2cf4e18d364
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-asicsdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-asicsdata/post-link.sh b/recipes/bioconductor-asicsdata/post-link.sh
index 5e413191611a5..cacabdb1a734e 100644
--- a/recipes/bioconductor-asicsdata/post-link.sh
+++ b/recipes/bioconductor-asicsdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "asicsdata-1.20.0"
+installBiocDataPackage.sh "asicsdata-1.22.0"
diff --git a/recipes/bioconductor-aspli/meta.yaml b/recipes/bioconductor-aspli/meta.yaml
index 9008a0e8a4d46..7b9d0fd06dfdf 100644
--- a/recipes/bioconductor-aspli/meta.yaml
+++ b/recipes/bioconductor-aspli/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.10.0" %}
+{% set version = "2.12.0" %}
 {% set name = "ASpli" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 718667b9b158c89ef2f05649516aa3aa
+  md5: abf86e5478e3191f21892ba2eb35e442
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-aspli", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-dt
@@ -42,18 +43,18 @@ requirements:
     - r-tidyr
     - r-upsetr
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-dt
diff --git a/recipes/bioconductor-assessorf/meta.yaml b/recipes/bioconductor-assessorf/meta.yaml
index dc05bd73c91d6..b03bbb0dcf99d 100644
--- a/recipes/bioconductor-assessorf/meta.yaml
+++ b/recipes/bioconductor-assessorf/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "AssessORF" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4f5157d6177c7915fc9776c5b4d8b214
+  md5: b11ca260fff21c6afe98ee471d79b3ec
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-assessorf", max_pin="x.x") }}'
   noarch: generic
 # Suggests: AssessORFData, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-decipher >=2.28.0,<2.29.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-decipher >=2.30.0,<2.31.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-decipher >=2.28.0,<2.29.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-decipher >=2.30.0,<2.31.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-assessorfdata/meta.yaml b/recipes/bioconductor-assessorfdata/meta.yaml
index e2efc67f2625b..59253cef5e2df 100644
--- a/recipes/bioconductor-assessorfdata/meta.yaml
+++ b/recipes/bioconductor-assessorfdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "AssessORFData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d7c0f6953391e3f1f610467f14384774
+  md5: 0dd44e672021a9179762efe4959e8608
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-assessorfdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: AssessORF, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-decipher >=2.28.0,<2.29.0'
+    - 'bioconductor-decipher >=2.30.0,<2.31.0'
     - r-base
   run:
-    - 'bioconductor-decipher >=2.28.0,<2.29.0'
+    - 'bioconductor-decipher >=2.30.0,<2.31.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-assessorfdata/post-link.sh b/recipes/bioconductor-assessorfdata/post-link.sh
index 6728e501cc5c3..dc7f9d707e3cd 100644
--- a/recipes/bioconductor-assessorfdata/post-link.sh
+++ b/recipes/bioconductor-assessorfdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "assessorfdata-1.18.0"
+installBiocDataPackage.sh "assessorfdata-1.20.0"
diff --git a/recipes/bioconductor-asset/meta.yaml b/recipes/bioconductor-asset/meta.yaml
index 96c79973b49fa..fe7f5b9cdda56 100644
--- a/recipes/bioconductor-asset/meta.yaml
+++ b/recipes/bioconductor-asset/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.18.0" %}
+{% set version = "2.20.0" %}
 {% set name = "ASSET" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c92854756cfbc064a6843c69dfefbfd5
+  md5: 395bcc1b0256acc248c5d3440bf5dfeb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-asset", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, knitr
 requirements:
diff --git a/recipes/bioconductor-assign/meta.yaml b/recipes/bioconductor-assign/meta.yaml
index f13680a216ae7..ce78d053d88c9 100644
--- a/recipes/bioconductor-assign/meta.yaml
+++ b/recipes/bioconductor-assign/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "ASSIGN" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 95d9e71f088aa3369298e6889fe82a2c
+  md5: c03c8eedec6379aa0fac65d11377fdf8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-assign", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle, lintr, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-ggplot2
     - r-gplots
@@ -29,7 +30,7 @@ requirements:
     - r-rlab
     - r-yaml
   run:
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-ggplot2
     - r-gplots
diff --git a/recipes/bioconductor-asurat/meta.yaml b/recipes/bioconductor-asurat/meta.yaml
index 77d1a41e21d31..79307284cafc7 100644
--- a/recipes/bioconductor-asurat/meta.yaml
+++ b/recipes/bioconductor-asurat/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "ASURAT" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f7bc663de993eed55f2a14aaa4946385
+  md5: a1cb615f6ddab8cb8b9ccb1a73ba39de
 build:
-  number: 1
+  number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-asurat", max_pin="x.x") }}'
 # Suggests: ggplot2, TENxPBMCData, dplyr, Rtsne, Seurat, AnnotationDbi, BiocGenerics, stringr, org.Hs.eg.db, knitr, rmarkdown, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-cluster
@@ -32,10 +33,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-cluster
diff --git a/recipes/bioconductor-ataccogaps/meta.yaml b/recipes/bioconductor-ataccogaps/meta.yaml
index 9a6e32fe9f3cb..3988a44053f03 100644
--- a/recipes/bioconductor-ataccogaps/meta.yaml
+++ b/recipes/bioconductor-ataccogaps/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "ATACCoGAPS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,32 +11,33 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 266f86c0e01ae75b62a42f9ff65d69e1
+  md5: f8cf8dd559b05caf23934090510297de
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ataccogaps", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, viridis
 requirements:
   host:
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
     - 'bioconductor-bsgenome.mmusculus.ucsc.mm10 >=1.4.0,<1.5.0'
-    - 'bioconductor-chromvar >=1.22.0,<1.23.0'
-    - 'bioconductor-cogaps >=3.19.0,<3.20.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-geneoverlap >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-chromvar >=1.24.0,<1.25.0'
+    - 'bioconductor-cogaps >=3.22.0,<3.23.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-geneoverlap >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-jaspar2016 >=1.28.0,<1.29.0'
-    - 'bioconductor-motifmatchr >=1.22.0,<1.23.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-jaspar2016 >=1.30.0,<1.31.0'
+    - 'bioconductor-motifmatchr >=1.24.0,<1.25.0'
     - 'bioconductor-mus.musculus >=1.3.0,<1.4.0'
-    - 'bioconductor-projectr >=1.16.0,<1.17.0'
-    - 'bioconductor-rgreat >=2.2.0,<2.3.0'
-    - 'bioconductor-tfbstools >=1.38.0,<1.39.0'
+    - 'bioconductor-projectr >=1.18.0,<1.19.0'
+    - 'bioconductor-rgreat >=2.4.0,<2.5.0'
+    - 'bioconductor-tfbstools >=1.40.0,<1.41.0'
     - r-base
     - r-dplyr
     - r-gplots
@@ -47,20 +48,20 @@ requirements:
   run:
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
     - 'bioconductor-bsgenome.mmusculus.ucsc.mm10 >=1.4.0,<1.5.0'
-    - 'bioconductor-chromvar >=1.22.0,<1.23.0'
-    - 'bioconductor-cogaps >=3.19.0,<3.20.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-geneoverlap >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-chromvar >=1.24.0,<1.25.0'
+    - 'bioconductor-cogaps >=3.22.0,<3.23.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-geneoverlap >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-jaspar2016 >=1.28.0,<1.29.0'
-    - 'bioconductor-motifmatchr >=1.22.0,<1.23.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-jaspar2016 >=1.30.0,<1.31.0'
+    - 'bioconductor-motifmatchr >=1.24.0,<1.25.0'
     - 'bioconductor-mus.musculus >=1.3.0,<1.4.0'
-    - 'bioconductor-projectr >=1.16.0,<1.17.0'
-    - 'bioconductor-rgreat >=2.2.0,<2.3.0'
-    - 'bioconductor-tfbstools >=1.38.0,<1.39.0'
+    - 'bioconductor-projectr >=1.18.0,<1.19.0'
+    - 'bioconductor-rgreat >=2.4.0,<2.5.0'
+    - 'bioconductor-tfbstools >=1.40.0,<1.41.0'
     - r-base
     - r-dplyr
     - r-gplots
diff --git a/recipes/bioconductor-atacseqqc/meta.yaml b/recipes/bioconductor-atacseqqc/meta.yaml
index 0ee2956e6770a..46ba87f49caf2 100644
--- a/recipes/bioconductor-atacseqqc/meta.yaml
+++ b/recipes/bioconductor-atacseqqc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "ATACseqQC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,51 +11,52 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 43463f55028e1db0b7f94d6014507700
+  md5: 6742da3bbb4073be7aa5f2544b65df23
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-atacseqqc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, phastCons100way.UCSC.hg19, MotifDb, trackViewer, testthat, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-chippeakanno >=3.34.0,<3.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-motifstack >=1.44.0,<1.45.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-chippeakanno >=3.36.0,<3.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-motifstack >=1.46.0,<1.47.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-kernsmooth
     - r-preseqr
     - r-randomforest
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-chippeakanno >=3.34.0,<3.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-motifstack >=1.44.0,<1.45.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-chippeakanno >=3.36.0,<3.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-motifstack >=1.46.0,<1.47.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-kernsmooth
     - r-preseqr
diff --git a/recipes/bioconductor-atacseqtfea/meta.yaml b/recipes/bioconductor-atacseqtfea/meta.yaml
index f00ef0af0ce58..e11f613d103a9 100644
--- a/recipes/bioconductor-atacseqtfea/meta.yaml
+++ b/recipes/bioconductor-atacseqtfea/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "ATACseqTFEA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: de251ce1a7cb6b4e6a670db088bb0c23
+  md5: 30284cc31687d97f23d2a7c023e8561d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-atacseqtfea", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Drerio.UCSC.danRer10, knitr, testthat, ATACseqQC, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-motifmatchr >=1.22.0,<1.23.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tfbstools >=1.38.0,<1.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-motifmatchr >=1.24.0,<1.25.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tfbstools >=1.40.0,<1.41.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -39,17 +40,17 @@ requirements:
     - r-matrix
     - r-pracma
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-motifmatchr >=1.22.0,<1.23.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tfbstools >=1.38.0,<1.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-motifmatchr >=1.24.0,<1.25.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tfbstools >=1.40.0,<1.41.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-atena/meta.yaml b/recipes/bioconductor-atena/meta.yaml
index f3faff83b15d8..f34d851d4bc20 100644
--- a/recipes/bioconductor-atena/meta.yaml
+++ b/recipes/bioconductor-atena/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "atena" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,43 +11,44 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 7522b8df9e9bb705d981a2f10adf1b39
+  md5: c7ae11b12240ed1d848301b4c40b019e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-atena", max_pin="x.x") }}'
   noarch: generic
 # Suggests: covr, BiocStyle, knitr, rmarkdown, RUnit, TxDb.Dmelanogaster.UCSC.dm6.ensGene, RColorBrewer
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-sparsematrixstats >=1.12.0,<1.13.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-sparsematrixstats >=1.14.0,<1.15.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - r-matrixstats
     - r-squarem
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-sparsematrixstats >=1.12.0,<1.13.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-sparsematrixstats >=1.14.0,<1.15.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - r-matrixstats
diff --git a/recipes/bioconductor-ath1121501.db/meta.yaml b/recipes/bioconductor-ath1121501.db/meta.yaml
index 1df20035f550b..ad07150ccead6 100644
--- a/recipes/bioconductor-ath1121501.db/meta.yaml
+++ b/recipes/bioconductor-ath1121501.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "ath1121501.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: c5d937ca9c6bcbb4385fb37a3b14ad15
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ath1121501.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.at.tair.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.at.tair.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.at.tair.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.at.tair.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ath1121501cdf/meta.yaml b/recipes/bioconductor-ath1121501cdf/meta.yaml
index 288550799f467..24a018cde9f47 100644
--- a/recipes/bioconductor-ath1121501cdf/meta.yaml
+++ b/recipes/bioconductor-ath1121501cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "ath1121501cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 8b63798143219b7c1c2666a91a1a2440
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ath1121501cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ath1121501probe/meta.yaml b/recipes/bioconductor-ath1121501probe/meta.yaml
index e976c42b63525..b5f881e5be459 100644
--- a/recipes/bioconductor-ath1121501probe/meta.yaml
+++ b/recipes/bioconductor-ath1121501probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "ath1121501probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: eeeae5e6550bb472ba3419d71bbd7dfb
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ath1121501probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-atsnp/meta.yaml b/recipes/bioconductor-atsnp/meta.yaml
index ee86773b673f5..22b2497f49120 100644
--- a/recipes/bioconductor-atsnp/meta.yaml
+++ b/recipes/bioconductor-atsnp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "atSNP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3d73cffb926671ee83a72e6f5cf34428
+  md5: e7de15cd417026f8449b14841ff89bd2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-atsnp", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-motifstack >=1.44.0,<1.45.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-motifstack >=1.46.0,<1.47.0'
     - r-base
     - r-data.table
     - r-ggplot2
@@ -34,10 +35,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-motifstack >=1.44.0,<1.45.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-motifstack >=1.46.0,<1.47.0'
     - r-base
     - r-data.table
     - r-ggplot2
diff --git a/recipes/bioconductor-attract/meta.yaml b/recipes/bioconductor-attract/meta.yaml
index d15a94a2d8b3c..8bf0a00a35862 100644
--- a/recipes/bioconductor-attract/meta.yaml
+++ b/recipes/bioconductor-attract/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.52.0" %}
+{% set version = "1.54.0" %}
 {% set name = "attract" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: bc7912564093f9fbc689a27829012832
+  md5: e7d563026d5d00b5dd3bd906268af221
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-attract", max_pin="x.x") }}'
   noarch: generic
 # Suggests: illuminaHumanv1.db
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-reactome.db >=1.84.0,<1.85.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-reactome.db >=1.86.0,<1.87.0'
     - r-base
     - r-cluster
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-reactome.db >=1.84.0,<1.85.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-reactome.db >=1.86.0,<1.87.0'
     - r-base
     - r-cluster
 test:
diff --git a/recipes/bioconductor-aucell/meta.yaml b/recipes/bioconductor-aucell/meta.yaml
index 5d91c15ceb337..806723573eb1a 100644
--- a/recipes/bioconductor-aucell/meta.yaml
+++ b/recipes/bioconductor-aucell/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "AUCell" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 20e4725a450ea1ef9ae1de7b6e0b2a4c
+  md5: 4d095823da2fd13bf83c831c037564ff
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-aucell", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biobase, BiocStyle, doSNOW, dynamicTreeCut, DT, GEOquery, knitr, NMF, plyr, R2HTML, rmarkdown, reshape2, plotly, rbokeh, Rtsne, testthat, zoo
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-matrix
@@ -33,11 +34,11 @@ requirements:
     - r-r.utils
     - r-shiny
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-matrix
diff --git a/recipes/bioconductor-autonomics/meta.yaml b/recipes/bioconductor-autonomics/meta.yaml
index 10078e09c11a3..506a4b040c9ad 100644
--- a/recipes/bioconductor-autonomics/meta.yaml
+++ b/recipes/bioconductor-autonomics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.2" %}
 {% set name = "autonomics" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 79d945c34c8797df2eb8140818e05b57
+  md5: 9034c755764d54d8bf0eb0e330f4e54f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-autonomics", max_pin="x.x") }}'
   noarch: generic
 # Suggests: affy, AnnotationDbi, BiocManager, BiocStyle, diagram, GenomicRanges, GEOquery, hgu95av2.db, ICSNP, knitr, lme4, lmerTest, MASS, mixOmics, mpm, nlme, org.Hs.eg.db, org.Mm.eg.db, RCurl, remotes, rmarkdown, ropls, Rsubread, rtracklayer, seqinr, statmod, testthat
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-abind
-    - r-assertive
+    - r-assertive.base
+    - r-assertive.files
+    - r-assertive.numbers
+    - r-assertive.sets
     - r-base
     - r-bit64
     - r-colorspace
@@ -49,16 +53,19 @@ requirements:
     - r-stringi
     - r-tidyr
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-abind
-    - r-assertive
+    - r-assertive.base
+    - r-assertive.files
+    - r-assertive.numbers
+    - r-assertive.sets
     - r-base
     - r-bit64
     - r-colorspace
diff --git a/recipes/bioconductor-awfisher/meta.yaml b/recipes/bioconductor-awfisher/meta.yaml
index 3d0ec3cad3dd0..cc019247c8442 100644
--- a/recipes/bioconductor-awfisher/meta.yaml
+++ b/recipes/bioconductor-awfisher/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "AWFisher" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a52828e4fdc882bcc16a7a4de22af840
+  md5: ba9b2824782018cc7626ebc72b6bb81e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-awfisher", max_pin="x.x") }}'
 # Suggests: knitr, tightClust
 requirements:
   host:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-awst/meta.yaml b/recipes/bioconductor-awst/meta.yaml
index 4e3ebced198fc..c735340e61235 100644
--- a/recipes/bioconductor-awst/meta.yaml
+++ b/recipes/bioconductor-awst/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "awst" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 88c6bfd36a182af8d3107bcb8cacba4a
+  md5: a7ca0636a8f728b63d6cf56729b856eb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-awst", max_pin="x.x") }}'
   noarch: generic
 # Suggests: airway, ggplot2, testthat, EDASeq, knitr, BiocStyle, RefManageR, sessioninfo, rmarkdown
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-baalchip/meta.yaml b/recipes/bioconductor-baalchip/meta.yaml
index 95ce06a3db06a..4596a55c8a87c 100644
--- a/recipes/bioconductor-baalchip/meta.yaml
+++ b/recipes/bioconductor-baalchip/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "BaalChIP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d5b38867245ae1ce58e3d6e1f50f6e5f
+  md5: 5f2cf6dd86b26982d4d7ed693f961246
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-baalchip", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-coda
     - r-doby
@@ -35,11 +36,11 @@ requirements:
     - r-reshape2
     - r-scales
   run:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-coda
     - r-doby
diff --git a/recipes/bioconductor-bacon/meta.yaml b/recipes/bioconductor-bacon/meta.yaml
index 988a288f5b586..350eb69311bf0 100644
--- a/recipes/bioconductor-bacon/meta.yaml
+++ b/recipes/bioconductor-bacon/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "bacon" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: fdad543dfc946ebc8aa940e9f5a9da4e
+  md5: 3757e896d5a8253845a21e37e555044a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bacon", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, roxygen2
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-ellipse
     - r-ggplot2
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-ellipse
     - r-ggplot2
diff --git a/recipes/bioconductor-bader/meta.yaml b/recipes/bioconductor-bader/meta.yaml
index c86c6dd83e7e6..346caafa84021 100644
--- a/recipes/bioconductor-bader/meta.yaml
+++ b/recipes/bioconductor-bader/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "BADER" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ec42e5966b46992505dacfb8880b24b0
+  md5: 10d4e5e231ff178df7922078024f9d89
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bader", max_pin="x.x") }}'
 # Suggests: pasilla (>= 0.2.10)
 requirements:
   host:
diff --git a/recipes/bioconductor-badregionfinder/meta.yaml b/recipes/bioconductor-badregionfinder/meta.yaml
index e4d5277acfd58..18612ea8cae65 100644
--- a/recipes/bioconductor-badregionfinder/meta.yaml
+++ b/recipes/bioconductor-badregionfinder/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "BadRegionFinder" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3fe981fffe29fd21bcc16672c1d46205
+  md5: c492af1d6b1297cd322a79355e3d3664
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-badregionfinder", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Hsapiens.UCSC.hg19
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-bags/meta.yaml b/recipes/bioconductor-bags/meta.yaml
index 8e523dd945fc8..9aa67ffe4f606 100644
--- a/recipes/bioconductor-bags/meta.yaml
+++ b/recipes/bioconductor-bags/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.40.0" %}
+{% set version = "2.42.0" %}
 {% set name = "BAGS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 206c6b841ff841017f5a6af951bcbbef
+  md5: 42c7a57422ddbb5c2d5263703a7e22d0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bags", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-breastcancervdx >=1.38.0,<1.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-breastcancervdx >=1.40.0,<1.41.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-breastcancervdx >=1.38.0,<1.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-breastcancervdx >=1.40.0,<1.41.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-ballgown/meta.yaml b/recipes/bioconductor-ballgown/meta.yaml
index e927ffedbda31..a9d3e0017fa92 100644
--- a/recipes/bioconductor-ballgown/meta.yaml
+++ b/recipes/bioconductor-ballgown/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.32.0" %}
+{% set version = "2.34.0" %}
 {% set name = "ballgown" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 8bf7da5968f9f4cc1aa14d8f0693d8e2
+  md5: 805a1514b4080a8b00b4bdfce051dcda
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ballgown", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, markdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-rcolorbrewer
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-rcolorbrewer
 test:
diff --git a/recipes/bioconductor-bambu/meta.yaml b/recipes/bioconductor-bambu/meta.yaml
index c1fcb56024e76..0a5192523653c 100644
--- a/recipes/bioconductor-bambu/meta.yaml
+++ b/recipes/bioconductor-bambu/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.2.4" %}
+{% set version = "3.4.0" %}
 {% set name = "bambu" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d9a12cd1329e08735800e7928b98fb97
+  md5: 900e0e67c251f12989154113c54d2b32
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bambu", max_pin="x.x") }}'
 # Suggests: AnnotationDbi, Biostrings, rmarkdown, BiocFileCache, ggplot2, ComplexHeatmap, circlize, ggbio, gridExtra, knitr, testthat, BSgenome.Hsapiens.NCBI.GRCh38, TxDb.Hsapiens.UCSC.hg38.knownGene, ExperimentHub (>= 1.15.3), DESeq2, NanoporeRNASeq, purrr, apeglm, utils, DEXSeq
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -41,17 +42,17 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-dplyr
diff --git a/recipes/bioconductor-bamsignals/meta.yaml b/recipes/bioconductor-bamsignals/meta.yaml
index 6e7abbf45ed04..aa4d6567aedc3 100644
--- a/recipes/bioconductor-bamsignals/meta.yaml
+++ b/recipes/bioconductor-bamsignals/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "bamsignals" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: ee29481c743d792e65ebff380d4fdf1e
+  md5: e7b42351aa9651bdf7d429a6377143f5
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bamsignals", max_pin="x.x") }}'
 # Suggests: testthat (>= 0.9), Rsamtools, BiocStyle, knitr, rmarkdown
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - 'r-rcpp >=0.10.6'
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - 'r-rcpp >=0.10.6'
   build:
@@ -47,11 +48,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-2
+  license: GPL-2.0-only
   summary: 'Extract read count signals from bam files'
   description: 'This package allows to efficiently obtain count vectors from indexed bam files. It counts the number of reads in given genomic ranges and it computes reads profiles and coverage profiles. It also handles paired-end data.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:bamsignals
     - doi:10.1038/nmeth.3252
diff --git a/recipes/bioconductor-bandits/meta.yaml b/recipes/bioconductor-bandits/meta.yaml
index de9b008f4a75a..7ad9f0390a7b8 100644
--- a/recipes/bioconductor-bandits/meta.yaml
+++ b/recipes/bioconductor-bandits/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.1" %}
+{% set version = "1.18.1" %}
 {% set name = "BANDITS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c6ef9178205f8a59be55faea48e08b90
+  md5: 2a65b9a4669d4075f5882047445491eb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bandits", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, testthat, tximport, BiocStyle, GenomicFeatures, Biostrings
-# SystemRequirements: C++11
+# SystemRequirements: C++17
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-drimseq >=1.28.0,<1.29.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-drimseq >=1.30.0,<1.31.0'
     - r-base
     - r-data.table
     - r-doparallel
@@ -36,8 +37,8 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-drimseq >=1.28.0,<1.29.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-drimseq >=1.30.0,<1.31.0'
     - r-base
     - r-data.table
     - r-doparallel
diff --git a/recipes/bioconductor-bandle/meta.yaml b/recipes/bioconductor-bandle/meta.yaml
index 41051d877b568..c2bea3dd5035c 100644
--- a/recipes/bioconductor-bandle/meta.yaml
+++ b/recipes/bioconductor-bandle/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.1" %}
+{% set version = "1.6.0" %}
 {% set name = "bandle" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 18a4217c592ace34eccbb1b9ea46295d
+  md5: 9c8dd928dd2b7900ff453ddc590ad6e4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bandle", max_pin="x.x") }}'
 # Suggests: coda (>= 0.19-4), testthat, interp, fields, pheatmap, viridis, rmarkdown, spelling
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-proloc >=1.40.0,<1.41.0'
-    - 'bioconductor-prolocdata >=1.38.0,<1.39.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-proloc >=1.42.0,<1.43.0'
+    - 'bioconductor-prolocdata >=1.40.0,<1.41.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-bh
     - r-circlize
@@ -45,13 +46,13 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-proloc >=1.40.0,<1.41.0'
-    - 'bioconductor-prolocdata >=1.38.0,<1.39.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-proloc >=1.42.0,<1.43.0'
+    - 'bioconductor-prolocdata >=1.40.0,<1.41.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-bh
     - r-circlize
diff --git a/recipes/bioconductor-banocc/meta.yaml b/recipes/bioconductor-banocc/meta.yaml
index 0aff09d41f5b8..6c42e52f10707 100644
--- a/recipes/bioconductor-banocc/meta.yaml
+++ b/recipes/bioconductor-banocc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "banocc" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f67213c67fb7ef2fa721d0c38dceb1b0
+  md5: 5a73975945814e725991bd67552349e6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-banocc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, methods, testthat, BiocStyle
 requirements:
diff --git a/recipes/bioconductor-barcodetrackr/meta.yaml b/recipes/bioconductor-barcodetrackr/meta.yaml
index 56dad017f8320..c001ab2392527 100644
--- a/recipes/bioconductor-barcodetrackr/meta.yaml
+++ b/recipes/bioconductor-barcodetrackr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "barcodetrackR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7ef50b9baf6cb0f19e3ad67f6afb445e
+  md5: 34e3b62fbe85f743278fba96cfc8c618
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-barcodetrackr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, magick, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-cowplot
@@ -42,8 +43,8 @@ requirements:
     - r-vegan
     - r-viridis
   run:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-cowplot
diff --git a/recipes/bioconductor-barley1cdf/meta.yaml b/recipes/bioconductor-barley1cdf/meta.yaml
index c86da8e98d869..462dda51f3f36 100644
--- a/recipes/bioconductor-barley1cdf/meta.yaml
+++ b/recipes/bioconductor-barley1cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "barley1cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 16a2ca83f550518756d9fa3273672157
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-barley1cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-barley1probe/meta.yaml b/recipes/bioconductor-barley1probe/meta.yaml
index a6bb73c10d152..851b639c63da9 100644
--- a/recipes/bioconductor-barley1probe/meta.yaml
+++ b/recipes/bioconductor-barley1probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "barley1probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 80595d8ecf83ba83ea84a722a24ab474
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-barley1probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-basecallqc/meta.yaml b/recipes/bioconductor-basecallqc/meta.yaml
index 20641673259f7..a9a2496602e83 100644
--- a/recipes/bioconductor-basecallqc/meta.yaml
+++ b/recipes/bioconductor-basecallqc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "basecallQC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3d01b22d917934112ec3feaad5268060
+  md5: ad61b901f8e533f817dccfb4830b222a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-basecallqc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle
 # SystemRequirements: bcl2Fastq (versions >= 2.1.7)
 requirements:
   host:
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -39,7 +40,7 @@ requirements:
     - r-xml
     - r-yaml
   run:
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - r-data.table
     - r-dplyr
diff --git a/recipes/bioconductor-basespacer/meta.yaml b/recipes/bioconductor-basespacer/meta.yaml
index 0f6a9d240c07b..d19b37977de6b 100644
--- a/recipes/bioconductor-basespacer/meta.yaml
+++ b/recipes/bioconductor-basespacer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.44.0" %}
+{% set version = "1.46.0" %}
 {% set name = "BaseSpaceR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 940b776f826fff5208c944e26a4fa538
+  md5: b141511c6e978d4f26c8ec4c42c078c2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-basespacer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, IRanges, Rsamtools
 requirements:
diff --git a/recipes/bioconductor-basic4cseq/meta.yaml b/recipes/bioconductor-basic4cseq/meta.yaml
index 05f70073532b7..1a5adc44f4e62 100644
--- a/recipes/bioconductor-basic4cseq/meta.yaml
+++ b/recipes/bioconductor-basic4cseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "Basic4Cseq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1c3471249017f78eda382aba54e760ea
+  md5: b6e8e624b34a0626cfa015e9814d017b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-basic4cseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Hsapiens.UCSC.hg19
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - 'bioconductor-bsgenome.ecoli.ncbi.20080805 >=1.3.0,<1.4.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-catools
     - r-rcircos
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - 'bioconductor-bsgenome.ecoli.ncbi.20080805 >=1.3.0,<1.4.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-catools
     - r-rcircos
diff --git a/recipes/bioconductor-basics/meta.yaml b/recipes/bioconductor-basics/meta.yaml
index b2c87423a85e7..71548c210ade6 100644
--- a/recipes/bioconductor-basics/meta.yaml
+++ b/recipes/bioconductor-basics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.12.3" %}
+{% set version = "2.14.0" %}
 {% set name = "BASiCS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 148355fc63bab3ac6c9b742f6613286f
+  md5: 1252fa180b0da21a4a22e3400550ab93
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-basics", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, scRNAseq, magick
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - r-coda
@@ -47,14 +48,14 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - r-coda
diff --git a/recipes/bioconductor-basicstan/meta.yaml b/recipes/bioconductor-basicstan/meta.yaml
index 3f917708d53b6..5e7eecf766f1d 100644
--- a/recipes/bioconductor-basicstan/meta.yaml
+++ b/recipes/bioconductor-basicstan/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "BASiCStan" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 130a35d534f52c5361f97c16bb7af5c2
+  md5: b7179ffcf510240c0c3cc6e8e31b60d7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-basicstan", max_pin="x.x") }}'
 # Suggests: testthat (>= 3.0.0), knitr, rmarkdown
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-basics >=2.12.0,<2.13.0'
-    - 'bioconductor-glmgampoi >=1.12.0,<1.13.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-basics >=2.14.0,<2.15.0'
+    - 'bioconductor-glmgampoi >=1.14.0,<1.15.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-bh >=1.66.0'
     - 'r-rcpp >=0.12.0'
@@ -38,12 +39,12 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-basics >=2.12.0,<2.13.0'
-    - 'bioconductor-glmgampoi >=1.12.0,<1.13.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-basics >=2.14.0,<2.15.0'
+    - 'bioconductor-glmgampoi >=1.14.0,<1.15.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-bh >=1.66.0'
     - 'r-rcpp >=0.12.0'
diff --git a/recipes/bioconductor-basicstarrseq/meta.yaml b/recipes/bioconductor-basicstarrseq/meta.yaml
index 603ee18b85d63..0962d27074600 100644
--- a/recipes/bioconductor-basicstarrseq/meta.yaml
+++ b/recipes/bioconductor-basicstarrseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "BasicSTARRseq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5309450baf05eaa4b75962a1c51a42d2
+  md5: 45c21fe93b28467ae466fd4017792494
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-basicstarrseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
   host:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-basilisk.utils/meta.yaml b/recipes/bioconductor-basilisk.utils/meta.yaml
index bbf7fae14022c..50279f87793f9 100644
--- a/recipes/bioconductor-basilisk.utils/meta.yaml
+++ b/recipes/bioconductor-basilisk.utils/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.1" %}
+{% set version = "1.14.1" %}
 {% set name = "basilisk.utils" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 4c999a6536d2c0b080b9f2ee83f3bd47
+  md5: d5e61359283886e8653f772e65b0a898
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-basilisk.utils", max_pin="x.x") }}'
   noarch: generic
 # Suggests: reticulate, knitr, rmarkdown, BiocStyle, testthat, basilisk
 requirements:
   host:
-    - 'bioconductor-dir.expiry >=1.8.0,<1.9.0'
+    - 'bioconductor-dir.expiry >=1.10.0,<1.11.0'
     - r-base
   run:
-    - 'bioconductor-dir.expiry >=1.8.0,<1.9.0'
+    - 'bioconductor-dir.expiry >=1.10.0,<1.11.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-basilisk/meta.yaml b/recipes/bioconductor-basilisk/meta.yaml
index 1537a740c3827..8e6089e3f742c 100644
--- a/recipes/bioconductor-basilisk/meta.yaml
+++ b/recipes/bioconductor-basilisk/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.1" %}
+{% set version = "1.14.1" %}
 {% set name = "basilisk" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 5335a9b864bad01710c0e326dabc29e3
+  md5: b47dde22cc3bb45ec9c785fe025241a0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-basilisk", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, testthat, callr
 requirements:
   host:
-    - 'bioconductor-basilisk.utils >=1.12.0,<1.13.0'
-    - 'bioconductor-dir.expiry >=1.8.0,<1.9.0'
+    - 'bioconductor-basilisk.utils >=1.14.0,<1.15.0'
+    - 'bioconductor-dir.expiry >=1.10.0,<1.11.0'
     - r-base
     - r-reticulate
   run:
-    - 'bioconductor-basilisk.utils >=1.12.0,<1.13.0'
-    - 'bioconductor-dir.expiry >=1.8.0,<1.9.0'
+    - 'bioconductor-basilisk.utils >=1.14.0,<1.15.0'
+    - 'bioconductor-dir.expiry >=1.10.0,<1.11.0'
     - r-base
     - r-reticulate
 test:
diff --git a/recipes/bioconductor-batchelor/meta.yaml b/recipes/bioconductor-batchelor/meta.yaml
index 9b702df1f403a..1bf33aba12c89 100644
--- a/recipes/bioconductor-batchelor/meta.yaml
+++ b/recipes/bioconductor-batchelor/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "batchelor" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c513fab91211a116143880cf00fc0f60
+  md5: e78aa00a2e343b79e7ad7aeb0fde1196
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-batchelor", max_pin="x.x") }}'
 # Suggests: testthat, BiocStyle, knitr, rmarkdown, scran, scater, bluster, scRNAseq
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-beachmat >=2.16.0,<2.17.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-residualmatrix >=1.10.0,<1.11.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scaledmatrix >=1.8.0,<1.9.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-residualmatrix >=1.12.0,<1.13.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scaledmatrix >=1.10.0,<1.11.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-igraph
     - r-matrix
@@ -41,19 +42,19 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-beachmat >=2.16.0,<2.17.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-residualmatrix >=1.10.0,<1.11.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scaledmatrix >=1.8.0,<1.9.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-residualmatrix >=1.12.0,<1.13.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scaledmatrix >=1.10.0,<1.11.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-igraph
     - r-matrix
@@ -67,8 +68,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-3
+  license: GPL-3.0-only
   summary: 'Single-Cell Batch Correction Methods'
   description: 'Implements a variety of methods for batch correction of single-cell (RNA sequencing) data. This includes methods based on detecting mutually nearest neighbors, as well as several efficient variants of linear regression of the log-expression values. Functions are also provided to perform global rescaling to remove differences in depth between batches, and to perform a principal components analysis that is robust to differences in the numbers of cells across batches.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
diff --git a/recipes/bioconductor-batchqc/meta.yaml b/recipes/bioconductor-batchqc/meta.yaml
index 499d4b9ec9822..b8c5d00be9898 100644
--- a/recipes/bioconductor-batchqc/meta.yaml
+++ b/recipes/bioconductor-batchqc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "BatchQC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9b92d0d1fb1c172b3558a5c0505b32df
+  md5: c8940666878af6ea1981e6d90095bc98
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-batchqc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat
 # SystemRequirements: pandoc (http://pandoc.org/installing.html) for generating reports from markdown files.
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-corpcor
     - r-ggvis
@@ -40,8 +41,8 @@ requirements:
     - r-shiny
     - pandoc
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-corpcor
     - r-ggvis
diff --git a/recipes/bioconductor-bayesknockdown/meta.yaml b/recipes/bioconductor-bayesknockdown/meta.yaml
index dffb36eda212c..34fc090aa009a 100644
--- a/recipes/bioconductor-bayesknockdown/meta.yaml
+++ b/recipes/bioconductor-bayesknockdown/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "BayesKnockdown" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4ba8a6b2608364a8b8cecee2d4ef1ba6
+  md5: 6efc97e1bf0448a97ca0b3d595096a3d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bayesknockdown", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-bayesspace/meta.yaml b/recipes/bioconductor-bayesspace/meta.yaml
index 7bc47b6699903..8c53962e97f47 100644
--- a/recipes/bioconductor-bayesspace/meta.yaml
+++ b/recipes/bioconductor-bayesspace/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.1" %}
+{% set version = "1.12.0" %}
 {% set name = "BayesSpace" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 674dcaf64d6130d014c2c1fbdf7d15a1
+  md5: 5505178450768dc45884632e3e0a3baf
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bayesspace", max_pin="x.x") }}'
 # Suggests: testthat, knitr, rmarkdown, igraph, spatialLIBD, dplyr, viridis, patchwork, RColorBrewer, Seurat
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - r-coda
@@ -47,14 +48,14 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - r-coda
diff --git a/recipes/bioconductor-baynorm/meta.yaml b/recipes/bioconductor-baynorm/meta.yaml
index 62993041a0030..32927dab2124f 100644
--- a/recipes/bioconductor-baynorm/meta.yaml
+++ b/recipes/bioconductor-baynorm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.1" %}
+{% set version = "1.20.0" %}
 {% set name = "bayNorm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4a17fbe6ef50d0b03b97ab29c7fa085c
+  md5: fda25f54086787e9a038cc59f0660a58
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-baynorm", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, BiocStyle, devtools, testthat
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bb
     - r-dosnow
@@ -38,9 +39,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bb
     - r-dosnow
diff --git a/recipes/bioconductor-bayseq/build.sh b/recipes/bioconductor-bayseq/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-bayseq/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-bayseq/meta.yaml b/recipes/bioconductor-bayseq/meta.yaml
new file mode 100644
index 0000000000000..1060cb2108ad2
--- /dev/null
+++ b/recipes/bioconductor-bayseq/meta.yaml
@@ -0,0 +1,43 @@
+{% set version = "2.36.0" %}
+{% set name = "baySeq" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: f46b63ebca2bda7c124133149aa7e552
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bayseq", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, BiocGenerics
+requirements:
+  host:
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - r-abind
+    - r-base
+  run:
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - r-abind
+    - r-base
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'Empirical Bayesian analysis of patterns of differential expression in count data'
+  description: 'This package identifies differential expression in high-throughput ''count'' data, such as that derived from next-generation sequencing machines, calculating estimated posterior likelihoods of differential expression (or more complex hypotheses) via empirical Bayesian methods.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-bbcanalyzer/meta.yaml b/recipes/bioconductor-bbcanalyzer/meta.yaml
index 8f40477b642e7..953c2118d4578 100644
--- a/recipes/bioconductor-bbcanalyzer/meta.yaml
+++ b/recipes/bioconductor-bbcanalyzer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "BBCAnalyzer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b6171b730ca7bc3859dd0964e928afd0
+  md5: 33b123d417f53ee03c547220dfdb1612
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bbcanalyzer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Hsapiens.UCSC.hg19
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-bcellviper/meta.yaml b/recipes/bioconductor-bcellviper/meta.yaml
index 33168059ab5e1..62edc4c0af227 100644
--- a/recipes/bioconductor-bcellviper/meta.yaml
+++ b/recipes/bioconductor-bcellviper/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "bcellViper" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c35a1f30610cc929acc8bfdc79af1d13
+  md5: 7e93bbaa204826358c77282e2a370074
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bcellviper", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bcellviper/post-link.sh b/recipes/bioconductor-bcellviper/post-link.sh
index e892ee98f5a1b..00b243486be7d 100644
--- a/recipes/bioconductor-bcellviper/post-link.sh
+++ b/recipes/bioconductor-bcellviper/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "bcellviper-1.36.0"
+installBiocDataPackage.sh "bcellviper-1.38.0"
diff --git a/recipes/bioconductor-bcrank/meta.yaml b/recipes/bioconductor-bcrank/meta.yaml
index 04a571ea243c0..52d59782460fa 100644
--- a/recipes/bioconductor-bcrank/meta.yaml
+++ b/recipes/bioconductor-bcrank/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.62.0" %}
+{% set version = "1.64.0" %}
 {% set name = "BCRANK" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 36cb7441c4c60585348d43c0a6b08692
+  md5: 6c551ab389af456ab76449642c01881a
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bcrank", max_pin="x.x") }}'
 # Suggests: seqLogo
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
   build:
     - {{ compiler('c') }}
@@ -35,11 +36,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-2
+  license: GPL-2.0-only
   summary: 'Predicting binding site consensus from ranked DNA sequences'
   description: 'Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:bcrank
     - doi:10.1093/nar/gkp381
diff --git a/recipes/bioconductor-bcseq/meta.yaml b/recipes/bioconductor-bcseq/meta.yaml
index 8b0acc15f7949..272410c1503a5 100644
--- a/recipes/bioconductor-bcseq/meta.yaml
+++ b/recipes/bioconductor-bcseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "bcSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 210e968615481f3c2a8671d9bf1f7a84
+  md5: e582b114bc4743a328b6ada2953a74da
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bcseq", max_pin="x.x") }}'
 # Suggests: knitr
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - r-matrix
     - 'r-rcpp >=0.12.12'
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - r-matrix
     - 'r-rcpp >=0.12.12'
diff --git a/recipes/bioconductor-bdmmacorrect/meta.yaml b/recipes/bioconductor-bdmmacorrect/meta.yaml
index f9fb720562ad3..46e78ea3e1948 100644
--- a/recipes/bioconductor-bdmmacorrect/meta.yaml
+++ b/recipes/bioconductor-bdmmacorrect/meta.yaml
@@ -13,14 +13,15 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 7dae9023d884c07857b4378154d8912b
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bdmmacorrect", max_pin="x") }}'
 # Suggests: knitr, rmarkdown, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-ape
     - r-base
     - r-ellipse
@@ -32,7 +33,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-ape
     - r-base
     - r-ellipse
@@ -55,3 +56,8 @@ about:
   description: 'Metagenomic sequencing techniques enable quantitative analyses of the microbiome. However, combining the microbial data from these experiments is challenging due to the variations between experiments. The existing methods for correcting batch effects do not consider the interactions between variables—microbial taxa in microbial studies—and the overdispersion of the microbiome data. Therefore, they are not applicable to microbiome data. We develop a new method, Bayesian Dirichlet-multinomial regression meta-analysis (BDMMA), to simultaneously model the batch effects and detect the microbial taxa associated with phenotypes. BDMMA automatically models the dependence among microbial taxa and is robust to the high dimensionality of the microbiome and their association sparsity.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
diff --git a/recipes/bioconductor-beachmat.hdf5/build.sh b/recipes/bioconductor-beachmat.hdf5/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-beachmat.hdf5/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-beachmat.hdf5/meta.yaml b/recipes/bioconductor-beachmat.hdf5/meta.yaml
new file mode 100644
index 0000000000000..d26114501a536
--- /dev/null
+++ b/recipes/bioconductor-beachmat.hdf5/meta.yaml
@@ -0,0 +1,53 @@
+{% set version = "1.0.0" %}
+{% set name = "beachmat.hdf5" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
+  md5: b2ca9b6358fb05895101e6a911ca0e39
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-beachmat.hdf5", max_pin="x.x") }}'
+# Suggests: testthat, BiocStyle, knitr, rmarkdown, rhdf5, Matrix
+# SystemRequirements: C++17, GNU make
+requirements:
+  host:
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
+    - r-base
+    - r-rcpp
+    - libblas
+    - liblapack
+  run:
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
+    - r-base
+    - r-rcpp
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - make
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'beachmat bindings for HDF5-backed matrices'
+  description: 'Extends beachmat to support initialization of tatami matrices from HDF5-backed arrays. This allows C++ code in downstream packages to directly call the HDF5 C/C++ library to access array data, without the need for block processing via DelayedArray. Some utilities are also provided for direct creation of an in-memory tatami matrix from a HDF5 file.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-beachmat/meta.yaml b/recipes/bioconductor-beachmat/meta.yaml
index 774c7927729ed..3f65c0a6c6a2f 100644
--- a/recipes/bioconductor-beachmat/meta.yaml
+++ b/recipes/bioconductor-beachmat/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.16.0" %}
+{% set version = "2.18.0" %}
 {% set name = "beachmat" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 4401998e14a9c1cfc516bd3167b4c8cc
+  md5: ec47172a09aba997192731b4a5f2f284
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-beachmat", max_pin="x.x") }}'
 # Suggests: testthat, BiocStyle, knitr, rmarkdown, rcmdcheck, BiocParallel, HDF5Array
-# SystemRequirements: C++11
+# SystemRequirements: C++17
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-sparsearray >=1.2.0,<1.3.0'
     - r-base
     - r-matrix
     - r-rcpp
     - libblas
     - liblapack
+    - tapi # [osx]
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-sparsearray >=1.2.0,<1.3.0'
     - r-base
     - r-matrix
     - r-rcpp
+    - tapi
+    - tapi # [osx]
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
@@ -43,11 +49,15 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-3
+  license: GPL-3.0-only
   summary: 'Compiling Bioconductor to Handle Each Matrix Type'
-  description: 'Provides a consistent C++ class interface for reading from and writing data to a variety of commonly used matrix types. Ordinary matrices and several sparse/dense Matrix classes are directly supported, third-party S4 classes may be supported by external linkage, while all other matrices are handled by DelayedArray block processing.'
+  description: 'Provides a consistent C++ class interface for reading from a variety of commonly used matrix types. Ordinary matrices and several sparse/dense Matrix classes are directly supported, along with a subset of the delayed operations implemented in the DelayedArray package. All other matrix-like objects are supported by calling back into R.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
   parent_recipe:
     name: bioconductor-beachmat
     path: recipes/bioconductor-beachmat
diff --git a/recipes/bioconductor-beadarray/meta.yaml b/recipes/bioconductor-beadarray/meta.yaml
index 0aa5898a78f0a..16d2467732896 100644
--- a/recipes/bioconductor-beadarray/meta.yaml
+++ b/recipes/bioconductor-beadarray/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.50.0" %}
+{% set version = "2.52.0" %}
 {% set name = "beadarray" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: e9d095d2a6a7bd24581de5f6c0435e48
+  md5: ed1729be533d0731833e523174b9dbb4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-beadarray", max_pin="x.x") }}'
 # Suggests: lumi, vsn, affy, hwriter, beadarrayExampleData, illuminaHumanv3.db, gridExtra, BiocStyle, TxDb.Hsapiens.UCSC.hg19.knownGene, ggbio, Nozzle.R1, knitr
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-beaddatapackr >=1.52.0,<1.53.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-illuminaio >=0.42.0,<0.43.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-beaddatapackr >=1.54.0,<1.55.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-illuminaio >=0.44.0,<0.45.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-ggplot2
     - r-hexbin
@@ -35,14 +36,14 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-beaddatapackr >=1.52.0,<1.53.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-illuminaio >=0.42.0,<0.43.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-beaddatapackr >=1.54.0,<1.55.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-illuminaio >=0.44.0,<0.45.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-ggplot2
     - r-hexbin
diff --git a/recipes/bioconductor-beadarrayexampledata/meta.yaml b/recipes/bioconductor-beadarrayexampledata/meta.yaml
index e1ac0a8c19463..8a5709c7d1053 100644
--- a/recipes/bioconductor-beadarrayexampledata/meta.yaml
+++ b/recipes/bioconductor-beadarrayexampledata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "beadarrayExampleData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c8607365b2ef3e8a20b33eac9ae52c51
+  md5: d327e659adc868f1e3c7ae457c60087b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-beadarrayexampledata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-beadarray >=2.50.0,<2.51.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-beadarray >=2.52.0,<2.53.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-beadarray >=2.50.0,<2.51.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-beadarray >=2.52.0,<2.53.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-beadarrayexampledata/post-link.sh b/recipes/bioconductor-beadarrayexampledata/post-link.sh
index 422f2ab789574..42281c8dc3e00 100644
--- a/recipes/bioconductor-beadarrayexampledata/post-link.sh
+++ b/recipes/bioconductor-beadarrayexampledata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "beadarrayexampledata-1.38.0"
+installBiocDataPackage.sh "beadarrayexampledata-1.40.0"
diff --git a/recipes/bioconductor-beadarraysnp/meta.yaml b/recipes/bioconductor-beadarraysnp/meta.yaml
index 0a37329c07dab..4302ccd7cd7b4 100644
--- a/recipes/bioconductor-beadarraysnp/meta.yaml
+++ b/recipes/bioconductor-beadarraysnp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.66.0" %}
+{% set version = "1.68.0" %}
 {% set name = "beadarraySNP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 65dff50fe83456771977aa02caaa90e5
+  md5: 748ed20ee2b38f5eee765be8125e5aca
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-beadarraysnp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: aCGH, affy, limma, snapCGH, beadarray, DNAcopy
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-quantsmooth >=1.66.0,<1.67.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-quantsmooth >=1.68.0,<1.69.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-quantsmooth >=1.66.0,<1.67.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-quantsmooth >=1.68.0,<1.69.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-beadarrayusecases/meta.yaml b/recipes/bioconductor-beadarrayusecases/meta.yaml
index 60801e1b3fd24..29e716cd61f24 100644
--- a/recipes/bioconductor-beadarrayusecases/meta.yaml
+++ b/recipes/bioconductor-beadarrayusecases/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "BeadArrayUseCases" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f02d0ef2902c1223d8e240b55bf77b91
+  md5: a939c03744773755b9a80de63a925c3e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-beadarrayusecases", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biostrings, GenomicRanges, illuminaHumanv1.db, illuminaHumanv2.db, illuminaHumanv3.db
 requirements:
   host:
-    - 'bioconductor-beadarray >=2.50.0,<2.51.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-beadarray >=2.52.0,<2.53.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
   run:
-    - 'bioconductor-beadarray >=2.50.0,<2.51.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-beadarray >=2.52.0,<2.53.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-beadarrayusecases/post-link.sh b/recipes/bioconductor-beadarrayusecases/post-link.sh
index 82f46270f399b..60fda081d37d8 100644
--- a/recipes/bioconductor-beadarrayusecases/post-link.sh
+++ b/recipes/bioconductor-beadarrayusecases/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "beadarrayusecases-1.38.0"
+installBiocDataPackage.sh "beadarrayusecases-1.40.0"
diff --git a/recipes/bioconductor-beaddatapackr/meta.yaml b/recipes/bioconductor-beaddatapackr/meta.yaml
index c18dfa1d34f87..6613cebb430b6 100644
--- a/recipes/bioconductor-beaddatapackr/meta.yaml
+++ b/recipes/bioconductor-beaddatapackr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.52.0" %}
+{% set version = "1.54.0" %}
 {% set name = "BeadDataPackR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c17047b30d1353607cbbcce03c90c182
+  md5: b1e73395e4f18af4b799a1f447487a87
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-beaddatapackr", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr
 requirements:
   host:
diff --git a/recipes/bioconductor-beadsorted.saliva.epic/meta.yaml b/recipes/bioconductor-beadsorted.saliva.epic/meta.yaml
index 889e16cef92f4..c39f60e6e07de 100644
--- a/recipes/bioconductor-beadsorted.saliva.epic/meta.yaml
+++ b/recipes/bioconductor-beadsorted.saliva.epic/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "BeadSorted.Saliva.EPIC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c521cbcd30e56de9e00a659d9e349320
+  md5: ca080a144452fad8ce1bdf8e86d88c74
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-beadsorted.saliva.epic", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-beadsorted.saliva.epic/post-link.sh b/recipes/bioconductor-beadsorted.saliva.epic/post-link.sh
index c8f7addca48d3..4ce7d05773879 100644
--- a/recipes/bioconductor-beadsorted.saliva.epic/post-link.sh
+++ b/recipes/bioconductor-beadsorted.saliva.epic/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "beadsorted.saliva.epic-1.8.0"
+installBiocDataPackage.sh "beadsorted.saliva.epic-1.10.0"
diff --git a/recipes/bioconductor-bearscc/meta.yaml b/recipes/bioconductor-bearscc/meta.yaml
index 2189683b26e73..7c4d24a0d7462 100644
--- a/recipes/bioconductor-bearscc/meta.yaml
+++ b/recipes/bioconductor-bearscc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "BEARscc" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 035ff6012c3c148dc0a38c75640a9f3b
+  md5: 44eee85006f40ec0a81fa5b6bf26f6c3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bearscc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, cowplot, knitr, rmarkdown, BiocStyle, NMF
 requirements:
   host:
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - r-data.table
     - r-ggplot2
   run:
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - r-data.table
     - r-ggplot2
diff --git a/recipes/bioconductor-beat/meta.yaml b/recipes/bioconductor-beat/meta.yaml
index 3c8ccf6974465..3305424e4dae2 100644
--- a/recipes/bioconductor-beat/meta.yaml
+++ b/recipes/bioconductor-beat/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "BEAT" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d41321849b8d11806159fbbe3ec9b636
+  md5: 46e0caf216c816dbe7323a1b0117fbf6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-beat", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-beclear/meta.yaml b/recipes/bioconductor-beclear/meta.yaml
index 7514638502fec..5c7b037c6d71c 100644
--- a/recipes/bioconductor-beclear/meta.yaml
+++ b/recipes/bioconductor-beclear/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.16.0" %}
+{% set version = "2.18.0" %}
 {% set name = "BEclear" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7ce5326c16adef82ee0e2d563b10d9b9
+  md5: bd34703e5a35dfc888f0029395df2c80
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-beclear", max_pin="x.x") }}'
 # Suggests: testthat, BiocStyle, knitr, rmarkdown, pander, seewave
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-abind
     - r-base
     - 'r-data.table >=1.11.8'
@@ -34,7 +35,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-abind
     - r-base
     - 'r-data.table >=1.11.8'
@@ -53,11 +54,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-3
+  license: 'GPL-3.0-only'
   summary: 'Correction of batch effects in DNA methylation data'
   description: 'Provides functions to detect and correct for batch effects in DNA methylation data. The core function is based on latent factor models and can also be used to predict missing values in any other matrix containing real numbers.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:beclear
     - doi:10.1371/journal.pone.0159921
diff --git a/recipes/bioconductor-beer/meta.yaml b/recipes/bioconductor-beer/meta.yaml
index 546117288f23e..db26d4c26e576 100644
--- a/recipes/bioconductor-beer/meta.yaml
+++ b/recipes/bioconductor-beer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "beer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 9af7a20cd4d9384bf123a7ef854572de
+  md5: c8e6192a3f9bd04b62ed564c8164ba00
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-beer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 3.0.0), BiocStyle, covr, codetools, knitr, rmarkdown, dplyr, ggplot2, spelling
 # SystemRequirements: JAGS (4.3.0)
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-phipdata >=1.8.0,<1.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-phipdata >=1.10.0,<1.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cli
     - r-progressr
     - r-rjags
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-phipdata >=1.8.0,<1.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-phipdata >=1.10.0,<1.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cli
     - r-progressr
diff --git a/recipes/bioconductor-benchdamic/build.sh b/recipes/bioconductor-benchdamic/build.sh
index c1d13421f5f1e..497f7b5bdb678 100644
--- a/recipes/bioconductor-benchdamic/build.sh
+++ b/recipes/bioconductor-benchdamic/build.sh
@@ -8,4 +8,5 @@ CXX=$CXX
 CXX98=$CXX
 CXX11=$CXX
 CXX14=$CXX" > ~/.R/Makevars
+export LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda-linux-gnu/sysroot/usr/lib64:${BUILD_PREFIX}/lib
 $R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-benchdamic/build_failure.linux-64.yaml b/recipes/bioconductor-benchdamic/build_failure.linux-64.yaml
new file mode 100644
index 0000000000000..19d91cac3dd0e
--- /dev/null
+++ b/recipes/bioconductor-benchdamic/build_failure.linux-64.yaml
@@ -0,0 +1,6 @@
+recipe_sha: 7993ff7f131f07a197238e7749097371f8ba7a13db8b1848d3a153e2501e2ab8  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+reason: |-
+  conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("bioconductor-mast[version='>=1.28.0,<1.29.0']"), MatchSpec("r-microbiomestat")}
+category: |-
+  dependency issue
diff --git a/recipes/bioconductor-benchdamic/meta.yaml b/recipes/bioconductor-benchdamic/meta.yaml
index b450a23c7ce83..bfe0f5be96b33 100644
--- a/recipes/bioconductor-benchdamic/meta.yaml
+++ b/recipes/bioconductor-benchdamic/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.1" %}
 {% set name = "benchdamic" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,77 +11,94 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 60b5a20af2bcf5272457ab2427f7f702
+  md5: ca158383ebf87138c91438c7946fe567
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-benchdamic", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr, rmarkdown, kableExtra, BiocStyle, SPsimSeq, testthat
+# Suggests: knitr, rmarkdown, kableExtra, BiocStyle, magick, SPsimSeq, testthat
 requirements:
   host:
-    - 'bioconductor-aldex2 >=1.32.0,<1.33.0'
-    - 'bioconductor-ancombc >=2.2.0,<2.3.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-dearseq >=1.12.0,<1.13.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-mast >=1.26.0,<1.27.0'
-    - 'bioconductor-metagenomeseq >=1.42.0,<1.43.0'
-    - 'bioconductor-noiseq >=2.44.0,<2.45.0'
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-treesummarizedexperiment >=2.8.0,<2.9.0'
-    - 'bioconductor-zinbwave >=1.22.0,<1.23.0'
+    - 'bioconductor-aldex2 >=1.34.0,<1.35.0'
+    - 'bioconductor-ancombc >=2.4.0,<2.5.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-dearseq >=1.14.0,<1.15.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-maaslin2 >=1.16.0,<1.17.0'
+    - 'bioconductor-mast >=1.28.0,<1.29.0'
+    - 'bioconductor-metagenomeseq >=1.43.0,<1.44.0'
+    - 'bioconductor-mixomics >=6.26.0,<6.27.0'
+    - 'bioconductor-noiseq >=2.46.0,<2.47.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-treesummarizedexperiment >=2.10.0,<2.11.0'
+    - 'bioconductor-zinbwave >=1.24.0,<1.25.0'
     - r-base
-    - r-corncob
     - r-cowplot
     - r-ggdendro
     - r-ggplot2
     - r-ggridges
+    - r-gunifrac
     - r-lme4
     - r-mglm
+    - r-microbiomestat
     - r-plyr
     - r-rcolorbrewer
     - r-reshape2
     - r-seurat
     - r-tidytext
   run:
-    - 'bioconductor-aldex2 >=1.32.0,<1.33.0'
-    - 'bioconductor-ancombc >=2.2.0,<2.3.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-dearseq >=1.12.0,<1.13.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-mast >=1.26.0,<1.27.0'
-    - 'bioconductor-metagenomeseq >=1.42.0,<1.43.0'
-    - 'bioconductor-noiseq >=2.44.0,<2.45.0'
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-treesummarizedexperiment >=2.8.0,<2.9.0'
-    - 'bioconductor-zinbwave >=1.22.0,<1.23.0'
+    - 'bioconductor-aldex2 >=1.34.0,<1.35.0'
+    - 'bioconductor-ancombc >=2.4.0,<2.5.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-dearseq >=1.14.0,<1.15.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-maaslin2 >=1.16.0,<1.17.0'
+    - 'bioconductor-mast >=1.28.0,<1.29.0'
+    - 'bioconductor-metagenomeseq >=1.43.0,<1.44.0'
+    - 'bioconductor-mixomics >=6.26.0,<6.27.0'
+    - 'bioconductor-noiseq >=2.46.0,<2.47.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-treesummarizedexperiment >=2.10.0,<2.11.0'
+    - 'bioconductor-zinbwave >=1.24.0,<1.25.0'
     - r-base
-    - r-corncob
     - r-cowplot
     - r-ggdendro
     - r-ggplot2
     - r-ggridges
+    - r-gunifrac
     - r-lme4
     - r-mglm
+    - r-microbiomestat
     - r-plyr
     - r-rcolorbrewer
     - r-reshape2
     - r-seurat
     - r-tidytext
+  build:
+    - {{ cdt('mesa-libgl-devel') }}  # [linux]
+    - {{ cdt('mesa-dri-drivers') }}  # [linux]
+    - {{ cdt('libselinux') }}  # [linux]
+    - {{ cdt('libxdamage') }}  # [linux]
+    - {{ cdt('libxxf86vm') }}  # [linux]
+    - xorg-libxfixes  # [linux]
 test:
   commands:
-    - '$R -e "library(''{{ name }}'')"'
+    - 'LD_LIBRARY_PATH="${BUILD_PREFIX}/x86_64-conda-linux-gnu/sysroot/usr/lib64:${BUILD_PREFIX}/lib" $R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: Artistic-2.0
   summary: 'Benchmark of differential abundance methods on microbiome data'
   description: 'Starting from a microbiome dataset (16S or WMS with absolute count values) it is possible to perform several analysis to assess the performances of many differential abundance detection methods. A basic and standardized version of the main differential abundance analysis methods is supplied but the user can also add his method to the benchmark. The analyses focus on 4 main aspects: i) the goodness of fit of each method''s distributional assumptions on the observed count data, ii) the ability to control the false discovery rate, iii) the within and between method concordances, iv) the truthfulness of the findings if any apriori knowledge is given. Several graphical functions are available for result visualization.'
+extra:
+  container:
+    extended-base: true
 
diff --git a/recipes/bioconductor-benchmarkfdrdata2019/meta.yaml b/recipes/bioconductor-benchmarkfdrdata2019/meta.yaml
index c4165ebe13f2c..2b84b56cb70ce 100644
--- a/recipes/bioconductor-benchmarkfdrdata2019/meta.yaml
+++ b/recipes/bioconductor-benchmarkfdrdata2019/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "benchmarkfdrData2019" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b50a599a3c8ca8b276400e6dc523b894
+  md5: 50ce7eb4100da1909ddd6c71c31e7e0c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-benchmarkfdrdata2019", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, knitr, BiocStyle, testthat, SummarizedBenchmark, dplyr, ggplot2, rlang
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-benchmarkfdrdata2019/post-link.sh b/recipes/bioconductor-benchmarkfdrdata2019/post-link.sh
index 3deac42f34a2e..1129bed5479d6 100644
--- a/recipes/bioconductor-benchmarkfdrdata2019/post-link.sh
+++ b/recipes/bioconductor-benchmarkfdrdata2019/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "benchmarkfdrdata2019-1.14.0"
+installBiocDataPackage.sh "benchmarkfdrdata2019-1.16.0"
diff --git a/recipes/bioconductor-beta7/meta.yaml b/recipes/bioconductor-beta7/meta.yaml
index 4c0bd96f335f4..47ad27c91e376 100644
--- a/recipes/bioconductor-beta7/meta.yaml
+++ b/recipes/bioconductor-beta7/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "beta7" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 0049331687b2d8ce06153507e09a4a03
+  md5: 7beee3699282a97c765cf418036fc0ed
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-beta7", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
   run:
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-beta7/post-link.sh b/recipes/bioconductor-beta7/post-link.sh
index 4f0c62a57883d..8c038bab630b5 100644
--- a/recipes/bioconductor-beta7/post-link.sh
+++ b/recipes/bioconductor-beta7/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "beta7-1.38.0"
+installBiocDataPackage.sh "beta7-1.40.0"
diff --git a/recipes/bioconductor-bg2/meta.yaml b/recipes/bioconductor-bg2/meta.yaml
index 09813ceea2158..707795e15d457 100644
--- a/recipes/bioconductor-bg2/meta.yaml
+++ b/recipes/bioconductor-bg2/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "BG2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 261572229e90f2182464a60b7e938b5b
+  md5: da6ea59dda3c728bdce70a5b43e4541e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bg2", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, formatR, rrBLUP, testthat (>= 3.0.0)
 requirements:
diff --git a/recipes/bioconductor-bgeecall/meta.yaml b/recipes/bioconductor-bgeecall/meta.yaml
index 5f5b52d928a09..75110cb7b2571 100644
--- a/recipes/bioconductor-bgeecall/meta.yaml
+++ b/recipes/bioconductor-bgeecall/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.1" %}
 {% set name = "BgeeCall" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4320d2ccfdaf2088c987b762dd3ce930
+  md5: d6ffd11b71faf135832b99515c7ba4cd
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bgeecall", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, rmarkdown, AnnotationHub, httr
 # SystemRequirements: kallisto
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-tximport >=1.28.0,<1.29.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-tximport >=1.30.0,<1.31.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -35,12 +36,12 @@ requirements:
     - r-rslurm
     - r-sjmisc
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-tximport >=1.28.0,<1.29.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-tximport >=1.30.0,<1.31.0'
     - r-base
     - r-data.table
     - r-dplyr
diff --git a/recipes/bioconductor-bgeedb/meta.yaml b/recipes/bioconductor-bgeedb/meta.yaml
index 04d135b56e86a..c84ee3e31ee05 100644
--- a/recipes/bioconductor-bgeedb/meta.yaml
+++ b/recipes/bioconductor-bgeedb/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.26.0" %}
+{% set version = "2.28.0" %}
 {% set name = "BgeeDB" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e5d66ef5cae6f2ee50528e452ebbdb68
+  md5: 9b8f5e9e829bd05d9a8322b3ff3408dd
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bgeedb", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, testthat, rmarkdown, markdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - r-curl
     - r-data.table
@@ -34,9 +35,9 @@ requirements:
     - r-rsqlite
     - r-tidyr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - r-curl
     - r-data.table
diff --git a/recipes/bioconductor-bgx/meta.yaml b/recipes/bioconductor-bgx/meta.yaml
index f2ea8223608db..a5f285e769368 100644
--- a/recipes/bioconductor-bgx/meta.yaml
+++ b/recipes/bioconductor-bgx/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.66.0" %}
+{% set version = "1.68.0" %}
 {% set name = "bgx" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: afab2c381aa1f363f242c26c13c23e14
+  md5: f068c237db58f3d75d3fef9cd5645cf4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bgx", max_pin="x.x") }}'
 # Suggests: affydata, hgu95av2cdf
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-gcrma >=2.72.0,<2.73.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-gcrma >=2.74.0,<2.75.0'
     - r-base
     - 'r-rcpp >=0.11.0'
     - libblas
     - liblapack
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-gcrma >=2.72.0,<2.73.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-gcrma >=2.74.0,<2.75.0'
     - r-base
     - 'r-rcpp >=0.11.0'
   build:
diff --git a/recipes/bioconductor-bhc/meta.yaml b/recipes/bioconductor-bhc/meta.yaml
index cd59cd3e4c9d7..0ee0b47bf9658 100644
--- a/recipes/bioconductor-bhc/meta.yaml
+++ b/recipes/bioconductor-bhc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.52.0" %}
+{% set version = "1.54.0" %}
 {% set name = "BHC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8b08d636ca1e237816a3c0ad4ddae86f
+  md5: 855087c8854bd3014111477e1c3cdcb9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bhc", max_pin="x.x") }}'
 requirements:
   host:
     - r-base
diff --git a/recipes/bioconductor-bicare/meta.yaml b/recipes/bioconductor-bicare/meta.yaml
index 5effab9942084..e703872a25ea2 100644
--- a/recipes/bioconductor-bicare/meta.yaml
+++ b/recipes/bioconductor-bicare/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.58.0" %}
+{% set version = "1.60.0" %}
 {% set name = "BicARE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7bdfe915b7a5fa05496b4dea685e3dc8
+  md5: d2498da49d01723934f42b4bf235fa05
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bicare", max_pin="x.x") }}'
 # Suggests: hgu95av2
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-bifet/meta.yaml b/recipes/bioconductor-bifet/meta.yaml
index f1c53ba4c19bf..9355f41630d56 100644
--- a/recipes/bioconductor-bifet/meta.yaml
+++ b/recipes/bioconductor-bifet/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "BiFET" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: df9b0e887f85ef2881e011ea1979ef57
+  md5: 11fcc80fc0c2745e5a15524fd2279bed
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bifet", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, testthat, knitr
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-poibin
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-poibin
 test:
diff --git a/recipes/bioconductor-biggr/build_failure.linux-64.yaml b/recipes/bioconductor-biggr/build_failure.linux-64.yaml
index 8d80c1d161066..1f88c079d088c 100644
--- a/recipes/bioconductor-biggr/build_failure.linux-64.yaml
+++ b/recipes/bioconductor-biggr/build_failure.linux-64.yaml
@@ -1,34 +1,35 @@
-recipe_sha: 5e4fb5d121cf8aff07e93d0614aac6a517def277ef61149a3a34e4a932691581  # The commit at which this recipe failed to build.
+recipe_sha: b7766d035130ae790cea751e3ffdd9b9db7a9ee165bdd6eac0deefe15615c9f1  # The commit at which this recipe failed to build.
 skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+category: |-
+  dependency issue
 log: |-
-  conda-forge/linux-64 100%[2K[1A[2K[0G[] 7.5s
-  conda-forge/linux-64 100%[2K[1A[2K[0G[] 7.6s
   conda-forge/linux-64 100%[2K[1A[2K[0Gconda-forge/linux-64
   [?25h[34mReloading output folder: [0m[34m/opt/conda/[0m[34mconda-bld[0m
   [?25l[2K[0G[] 0.0s
   [2K[1A[2K[0Gopt/conda/conda-bld/linux-64                        ??.?MB @  ??.?MB/s 0 failed  0.0s
-  opt/conda/conda-bld/noarch                         127.0 B @   1.4MB/s  0.0s
+  opt/conda/conda-bld/noarch                         127.0 B @   2.2MB/s  0.0s
   [?25h[34mReloading output folder: [0m[34m/opt/conda/[0m[34mconda-bld[0m
   [?25l[2K[0G[] 0.0s
   [2K[1A[2K[0Gopt/conda/conda-bld/linux-64                        ??.?MB @  ??.?MB/s 0 failed  0.0s
-  opt/conda/conda-bld/noarch                         127.0 B @   2.6MB/s  0.0s
+  opt/conda/conda-bld/noarch                         127.0 B @   2.2MB/s  0.0s
   [?25hMamba failed to solve:
+   - bioconductor-rsbml >=2.60.0,<2.61.0
+   - r-stringr
+   - bioconductor-hyperdraw >=1.54.0,<1.55.0
    - r-lim
    - r-base 4.3.*
-   - bioconductor-hypergraph >=1.72.0,<1.73.0
+   - bioconductor-hypergraph >=1.74.0,<1.75.0
    - r-limsolve
-   - r-stringr
-   - bioconductor-rsbml >=2.58.0,<2.59.0
-   - bioconductor-hyperdraw >=1.52.0,<1.53.0
 
   with channels:
+   - file:///opt/host-conda-bld
    - conda-forge
    - bioconda
    - defaults
 
   The reported errors are:
   - Encountered problems while solving:
-  -   - package bioconductor-hyperdraw-1.52.0-r43hba55f59_0 requires graphviz >=8.1.0,<9.0a0, but none of the providers can be installed
+  -   - package bioconductor-hyperdraw-1.54.0-r43hba55f59_0 requires graphviz >=8.1.0,<9.0a0, but none of the providers can be installed
   -
 
   Leaving build/test directories:
@@ -51,22 +52,23 @@ log: |-
     File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 234, in solve
       raise RuntimeError("Solver could not find solution."  error_string)
   RuntimeError: Solver could not find solution.Mamba failed to solve:
+   - bioconductor-rsbml >=2.60.0,<2.61.0
+   - r-stringr
+   - bioconductor-hyperdraw >=1.54.0,<1.55.0
    - r-lim
    - r-base 4.3.*
-   - bioconductor-hypergraph >=1.72.0,<1.73.0
+   - bioconductor-hypergraph >=1.74.0,<1.75.0
    - r-limsolve
-   - r-stringr
-   - bioconductor-rsbml >=2.58.0,<2.59.0
-   - bioconductor-hyperdraw >=1.52.0,<1.53.0
 
   with channels:
+   - file:///opt/host-conda-bld
    - conda-forge
    - bioconda
    - defaults
 
   The reported errors are:
   - Encountered problems while solving:
-  -   - package bioconductor-hyperdraw-1.52.0-r43hba55f59_0 requires graphviz >=8.1.0,<9.0a0, but none of the providers can be installed
+  -   - package bioconductor-hyperdraw-1.54.0-r43hba55f59_0 requires graphviz >=8.1.0,<9.0a0, but none of the providers can be installed
   -
 
   During handling of the above exception, another exception occurred:
@@ -100,5 +102,5 @@ log: |-
       actions = environ.get_install_actions(tmpdir, tuple(dependencies), env,
     File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 150, in mamba_get_install_actions
       raise err
-  conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("bioconductor-hyperdraw==1.52.0=r43hba55f59_0"), MatchSpec("graphviz[version='>=8.1.0,<9.0a0']")}
+  conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("bioconductor-hyperdraw==1.54.0=r43hba55f59_0"), MatchSpec("graphviz[version='>=8.1.0,<9.0a0']")}
 # Last 100 lines of the build log.
diff --git a/recipes/bioconductor-biggr/meta.yaml b/recipes/bioconductor-biggr/meta.yaml
index 605e46d2f9f9f..4ea339b2a2ef1 100644
--- a/recipes/bioconductor-biggr/meta.yaml
+++ b/recipes/bioconductor-biggr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "BiGGR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f95dbd34a7f3f8c0a918b6460b1bf3ef
+  md5: 16eeec0ca7502101425cbb568e6eef15
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biggr", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-hyperdraw >=1.52.0,<1.53.0'
-    - 'bioconductor-hypergraph >=1.72.0,<1.73.0'
-    - 'bioconductor-rsbml >=2.58.0,<2.59.0'
+    - 'bioconductor-hyperdraw >=1.54.0,<1.55.0'
+    - 'bioconductor-hypergraph >=1.74.0,<1.75.0'
+    - 'bioconductor-rsbml >=2.60.0,<2.61.0'
     - r-base
     - r-lim
     - r-limsolve
     - r-stringr
   run:
-    - 'bioconductor-hyperdraw >=1.52.0,<1.53.0'
-    - 'bioconductor-hypergraph >=1.72.0,<1.73.0'
-    - 'bioconductor-rsbml >=2.58.0,<2.59.0'
+    - 'bioconductor-hyperdraw >=1.54.0,<1.55.0'
+    - 'bioconductor-hypergraph >=1.74.0,<1.75.0'
+    - 'bioconductor-rsbml >=2.60.0,<2.61.0'
     - r-base
     - r-lim
     - r-limsolve
diff --git a/recipes/bioconductor-bigmelon/meta.yaml b/recipes/bioconductor-bigmelon/meta.yaml
index adc1e4a1657a3..0f7c8a2a7a8ee 100644
--- a/recipes/bioconductor-bigmelon/meta.yaml
+++ b/recipes/bioconductor-bigmelon/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "bigmelon" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 2793b4b6a4b2d2239f731c0f6fb60a4f
+  md5: 1c6944989ec4f16b1903143a34296bf0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bigmelon", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, RUnit, BiocStyle, minfiData, parallel, IlluminaHumanMethylation450kanno.ilmn12.hg19, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, bumphunter
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-illuminaio >=0.42.0,<0.43.0'
-    - 'bioconductor-methylumi >=2.46.0,<2.47.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-watermelon >=2.6.0,<2.7.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-illuminaio >=0.44.0,<0.45.0'
+    - 'bioconductor-methylumi >=2.48.0,<2.49.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-watermelon >=2.8.0,<2.9.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-illuminaio >=0.42.0,<0.43.0'
-    - 'bioconductor-methylumi >=2.46.0,<2.47.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-watermelon >=2.6.0,<2.7.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-illuminaio >=0.44.0,<0.45.0'
+    - 'bioconductor-methylumi >=2.48.0,<2.49.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-watermelon >=2.8.0,<2.9.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-bindingsitefinder/meta.yaml b/recipes/bioconductor-bindingsitefinder/meta.yaml
index 9a14cffb08f4d..0d45dbb551c79 100644
--- a/recipes/bioconductor-bindingsitefinder/meta.yaml
+++ b/recipes/bioconductor-bindingsitefinder/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "2.0.0" %}
 {% set name = "BindingSiteFinder" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,41 +11,58 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: deb1c8c88ca7fbd1701582975f32808f
+  md5: b54f11a27c1f6f55b4cc60ad8986e029
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bindingsitefinder", max_pin="x.x") }}'
   noarch: generic
-# Suggests: testthat, BiocStyle, knitr, rmarkdown, GenomicAlignments, ComplexHeatmap, forcats, scales
+# Suggests: testthat, BiocStyle, knitr, rmarkdown, GenomicAlignments, scales, Gviz, xlsx, GGally, patchwork, viridis, ggplotify, SummarizedExperiment, DESeq2, ggpointdensity, ggrastr, ashr
 requirements:
   host:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
+    - r-forcats
+    - r-ggdist
     - r-ggforce
     - r-ggplot2
+    - r-kableextra
+    - r-lifecycle
     - r-matrixstats
     - r-plyr
+    - r-rcolorbrewer
+    - r-rlang
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
+    - r-forcats
+    - r-ggdist
     - r-ggforce
     - r-ggplot2
+    - r-kableextra
+    - r-lifecycle
     - r-matrixstats
     - r-plyr
+    - r-rcolorbrewer
+    - r-rlang
     - r-tibble
     - r-tidyr
 test:
diff --git a/recipes/bioconductor-bioassayr/meta.yaml b/recipes/bioconductor-bioassayr/meta.yaml
index da01d4f62b18f..af54b2e1f736c 100644
--- a/recipes/bioconductor-bioassayr/meta.yaml
+++ b/recipes/bioconductor-bioassayr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "bioassayR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f2df098a9b7bb4735e92bf3a0b0d87c4
+  md5: 94ac7a2ff2a9de7b65d8ebd864513a31
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bioassayr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, RCurl, biomaRt, cellHTS2, knitr, knitcitations, knitrBootstrap, testthat, ggplot2, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-chemminer >=3.52.0,<3.53.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-chemminer >=3.54.0,<3.55.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - r-matrix
@@ -30,8 +31,8 @@ requirements:
     - 'r-rsqlite >=1.0.0'
     - r-xml
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-chemminer >=3.52.0,<3.53.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-chemminer >=3.54.0,<3.55.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - r-matrix
diff --git a/recipes/bioconductor-biobase/meta.yaml b/recipes/bioconductor-biobase/meta.yaml
index 5b76df1093a7a..f8f03fe0161a5 100644
--- a/recipes/bioconductor-biobase/meta.yaml
+++ b/recipes/bioconductor-biobase/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.60.0" %}
+{% set version = "2.62.0" %}
 {% set name = "Biobase" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7e427b98c2208f6c1c81cf4ec64caffc
+  md5: 75a65eb015d58ca611f2bebca41f9d2d
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biobase", max_pin="x.x") }}'
 # Suggests: tools, tkWidgets, ALL, RUnit, golubEsets, BiocStyle, knitr
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
   build:
     - {{ compiler('c') }}
@@ -39,6 +40,8 @@ about:
   summary: 'Biobase: Base functions for Bioconductor'
   description: 'Functions that are needed by many other packages or which replace R functions.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:biobase
 
diff --git a/recipes/bioconductor-biobroom/meta.yaml b/recipes/bioconductor-biobroom/meta.yaml
index 3cabf34e8bbf7..629191ae0ef98 100644
--- a/recipes/bioconductor-biobroom/meta.yaml
+++ b/recipes/bioconductor-biobroom/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "biobroom" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 5f8edee57c6cc7540b187ea4d0a9c457
+  md5: b0a4b29e9aa3bbb99f42cd2cd19ca4d7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biobroom", max_pin="x.x") }}'
   noarch: generic
 # Suggests: limma, DESeq2, airway, ggplot2, plyr, GenomicRanges, testthat, magrittr, edgeR, qvalue, knitr, data.table, MSnbase, rmarkdown, SummarizedExperiment
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-broom
     - r-dplyr
     - r-tidyr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-broom
     - r-dplyr
diff --git a/recipes/bioconductor-biobtreer/meta.yaml b/recipes/bioconductor-biobtreer/meta.yaml
index 70fa6d16cef8a..c14de14924e0e 100644
--- a/recipes/bioconductor-biobtreer/meta.yaml
+++ b/recipes/bioconductor-biobtreer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "biobtreeR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 94456402f79d5430e53b31d80ed2e3c1
+  md5: c341e537e79161abfd6f1f3382d3eb90
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biobtreer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr,testthat,rmarkdown,markdown
 requirements:
diff --git a/recipes/bioconductor-biocancer/meta.yaml b/recipes/bioconductor-biocancer/meta.yaml
index ce8ab589bd9c7..ff3219486924f 100644
--- a/recipes/bioconductor-biocancer/meta.yaml
+++ b/recipes/bioconductor-biocancer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "bioCancer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cec03fe98717844d52ff9f282dc125b0
+  md5: 2eff081b55d8bda988f08f1836420b24
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biocancer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, prettydoc, rmarkdown, knitr, testthat (>= 0.10.0)
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-genetclassifier >=1.40.0,<1.41.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.bt.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-reactome.db >=1.84.0,<1.85.0'
-    - 'bioconductor-reactomepa >=1.44.0,<1.45.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-genetclassifier >=1.42.0,<1.43.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.bt.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-reactome.db >=1.86.0,<1.87.0'
+    - 'bioconductor-reactomepa >=1.46.0,<1.47.0'
     - 'r-algdesign >=1.1.7.3'
     - r-base
     - 'r-diagrammer <=1.01'
@@ -49,16 +50,16 @@ requirements:
     - r-visnetwork
     - 'r-xml >=3.98'
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-genetclassifier >=1.40.0,<1.41.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.bt.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-reactome.db >=1.84.0,<1.85.0'
-    - 'bioconductor-reactomepa >=1.44.0,<1.45.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-genetclassifier >=1.42.0,<1.43.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.bt.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-reactome.db >=1.86.0,<1.87.0'
+    - 'bioconductor-reactomepa >=1.46.0,<1.47.0'
     - 'r-algdesign >=1.1.7.3'
     - r-base
     - 'r-diagrammer <=1.01'
@@ -83,6 +84,6 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: 'AGPL-3 | file LICENSE'
   summary: 'Interactive Multi-Omics Cancers Data Visualization and Analysis'
-  description: 'bioCancer is a Shiny App to visualize and analyse interactively Multi-Assays of Cancer Genomic Data.'
+  description: 'This package is a Shiny App to visualize and analyse interactively Multi-Assays of Cancer Genomic Data.'
   license_file: LICENSE
 
diff --git a/recipes/bioconductor-biocartaimage/build.sh b/recipes/bioconductor-biocartaimage/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-biocartaimage/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-biocartaimage/meta.yaml b/recipes/bioconductor-biocartaimage/meta.yaml
new file mode 100644
index 0000000000000..61d3f51296c03
--- /dev/null
+++ b/recipes/bioconductor-biocartaimage/meta.yaml
@@ -0,0 +1,39 @@
+{% set version = "1.0.0" %}
+{% set name = "BioCartaImage" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 8190c93a49f3d53085b3e6e44d482ffa
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biocartaimage", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: testthat, knitr, BiocStyle, ragg
+requirements:
+  host:
+    - r-base
+    - r-magick
+  run:
+    - r-base
+    - r-magick
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'MIT + file LICENSE'
+  summary: 'BioCarta Pathway Images'
+  description: 'The core functionality of the package is to provide coordinates of genes on the BioCarta pathway images and to provide methods to add self-defined graphics to the genes of interest.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-biocbaseutils/meta.yaml b/recipes/bioconductor-biocbaseutils/meta.yaml
index 14c57e3b3e022..66db86820aac2 100644
--- a/recipes/bioconductor-biocbaseutils/meta.yaml
+++ b/recipes/bioconductor-biocbaseutils/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "BiocBaseUtils" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6cb786aff723f206bb901ed336af3d23
+  md5: 23ed1406ff70165a763ca2040c46353e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biocbaseutils", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, tinytest
 requirements:
diff --git a/recipes/bioconductor-biocbook/build.sh b/recipes/bioconductor-biocbook/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-biocbook/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-biocbook/meta.yaml b/recipes/bioconductor-biocbook/meta.yaml
new file mode 100644
index 0000000000000..03d10aeca7f90
--- /dev/null
+++ b/recipes/bioconductor-biocbook/meta.yaml
@@ -0,0 +1,73 @@
+{% set version = "1.0.0" %}
+{% set name = "BiocBook" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 6bcb226068f30b135b705960de603ff0
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biocbook", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, knitr, testthat (>= 3.0.0), rmarkdown
+requirements:
+  host:
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - r-available
+    - r-base
+    - r-cli
+    - r-dplyr
+    - r-gert
+    - r-gh
+    - r-gitcreds
+    - r-glue
+    - r-httr
+    - r-purrr
+    - r-quarto
+    - r-renv
+    - r-rlang
+    - r-rprojroot
+    - r-stringr
+    - r-tibble
+    - r-usethis
+    - r-yaml
+  run:
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - r-available
+    - r-base
+    - r-cli
+    - r-dplyr
+    - r-gert
+    - r-gh
+    - r-gitcreds
+    - r-glue
+    - r-httr
+    - r-purrr
+    - r-quarto
+    - r-renv
+    - r-rlang
+    - r-rprojroot
+    - r-stringr
+    - r-tibble
+    - r-usethis
+    - r-yaml
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'MIT + file LICENSE'
+  summary: 'Write, containerize, publish and version Quarto books with Bioconductor'
+  description: 'A BiocBook can be created by authors (e.g. R developers, but also scientists, teachers, communicators, ...) who wish to 1) write (compile a body of biological and/or bioinformatics knowledge), 2) containerize (provide Docker images to reproduce the examples illustrated in the compendium), 3) publish (deploy an online book to disseminate the compendium), and 4) version (automatically generate specific online book versions and Docker images for specific Bioconductor releases).'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-bioccheck/meta.yaml b/recipes/bioconductor-bioccheck/meta.yaml
index e46357757fa10..2512f02beb7da 100644
--- a/recipes/bioconductor-bioccheck/meta.yaml
+++ b/recipes/bioconductor-bioccheck/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.1" %}
+{% set version = "1.38.0" %}
 {% set name = "BiocCheck" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2a476a077103abf378f09d9ccb3cf05a
+  md5: d003f035a6c197261bed5fa4cd989738
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bioccheck", max_pin="x.x") }}'
   noarch: generic
-# Suggests: RUnit, BiocGenerics, Biobase, jsonlite, rmarkdown, downloader, devtools (>= 1.4.1), usethis, BiocStyle, callr
+# Suggests: RUnit, BiocGenerics, Biobase, jsonlite, rmarkdown, downloader, devtools (>= 1.4.1), usethis, BiocStyle, GenomicRanges, gert
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocviews >=1.68.0,<1.69.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-biocbaseutils >=1.4.0,<1.5.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocviews >=1.70.0,<1.71.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-biocmanager
+    - r-callr
     - r-codetools
     - r-httr
     - r-knitr
     - r-stringdist
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocviews >=1.68.0,<1.69.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-biocbaseutils >=1.4.0,<1.5.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocviews >=1.70.0,<1.71.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-biocmanager
+    - r-callr
     - r-codetools
     - r-httr
     - r-knitr
diff --git a/recipes/bioconductor-biocfhir/meta.yaml b/recipes/bioconductor-biocfhir/meta.yaml
index 63a838470cbd5..10c51d83594e6 100644
--- a/recipes/bioconductor-biocfhir/meta.yaml
+++ b/recipes/bioconductor-biocfhir/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "BiocFHIR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 29abc8f873ab6dff5597cf23558e6778
+  md5: 788951417cde10ad9434dd443db47f80
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biocfhir", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, rjsoncons, igraph, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocbaseutils >=1.2.0,<1.3.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-biocbaseutils >=1.4.0,<1.5.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-dplyr
     - r-dt
@@ -31,8 +32,8 @@ requirements:
     - r-tidyr
     - r-visnetwork
   run:
-    - 'bioconductor-biocbaseutils >=1.2.0,<1.3.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-biocbaseutils >=1.4.0,<1.5.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-dplyr
     - r-dt
diff --git a/recipes/bioconductor-biocfilecache/meta.yaml b/recipes/bioconductor-biocfilecache/meta.yaml
index 50cb12f97189f..f7dcc3d5468c6 100644
--- a/recipes/bioconductor-biocfilecache/meta.yaml
+++ b/recipes/bioconductor-biocfilecache/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.8.0" %}
+{% set version = "2.10.1" %}
 {% set name = "BiocFileCache" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a8ad06bf5fc23d0aabde7ba149d4d675
+  md5: 80f9b9c7ef6f3fcb9aaff7125b409137
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biocfilecache", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, BiocStyle, rmarkdown, rtracklayer
 requirements:
diff --git a/recipes/bioconductor-biocgenerics/meta.yaml b/recipes/bioconductor-biocgenerics/meta.yaml
index 785b193559280..d2b4a7afa324d 100644
--- a/recipes/bioconductor-biocgenerics/meta.yaml
+++ b/recipes/bioconductor-biocgenerics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.46.0" %}
+{% set version = "0.48.1" %}
 {% set name = "BiocGenerics" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 619aadefdba5c7cebac0136ada0fb42a
+  md5: 77629e64c2a9a0324eb11bb59b53b126
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biocgenerics", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biobase, S4Vectors, IRanges, GenomicRanges, DelayedArray, Biostrings, Rsamtools, AnnotationDbi, affy, affyPLM, DESeq2, flowClust, MSnbase, annotate, RUnit
 requirements:
diff --git a/recipes/bioconductor-biocgraph/meta.yaml b/recipes/bioconductor-biocgraph/meta.yaml
index adc493c692e0c..e66a514e3c4a8 100644
--- a/recipes/bioconductor-biocgraph/meta.yaml
+++ b/recipes/bioconductor-biocgraph/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.62.0" %}
+{% set version = "1.64.0" %}
 {% set name = "biocGraph" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a46b4f9c1a38fa5576b0323a22ebbedc
+  md5: 5deb3ff8596eaf678592ad9ae15defe2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biocgraph", max_pin="x.x") }}'
   noarch: generic
 # Suggests: fibroEset, geneplotter, hgu95av2.db
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-geneplotter >=1.78.0,<1.79.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-geneplotter >=1.80.0,<1.81.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-geneplotter >=1.78.0,<1.79.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-geneplotter >=1.80.0,<1.81.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-biochail/meta.yaml b/recipes/bioconductor-biochail/meta.yaml
index 5ea8066b7b2d6..aeb4d1b333b34 100644
--- a/recipes/bioconductor-biochail/meta.yaml
+++ b/recipes/bioconductor-biochail/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "BiocHail" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: deafe3a2c0dccb5619f29ac3f917a3e0
+  md5: 4707c299d0bb3b41001065a753d89f33
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biochail", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, BiocStyle, ggplot2, DT
 requirements:
   host:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-dplyr
     - r-reticulate
   run:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-dplyr
     - r-reticulate
diff --git a/recipes/bioconductor-biochubsshiny/meta.yaml b/recipes/bioconductor-biochubsshiny/meta.yaml
index 65f3ba1f939a8..eda08864d20d6 100644
--- a/recipes/bioconductor-biochubsshiny/meta.yaml
+++ b/recipes/bioconductor-biochubsshiny/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "BiocHubsShiny" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 123a3f285b0653c760cbb5a11fcc84e8
+  md5: bc7ef9bc6285eb045f191b7c72846d68
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biochubsshiny", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocManager, BiocStyle, knitr, rmarkdown, sessioninfo, shinytest2
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dt
     - r-htmlwidgets
@@ -33,9 +34,9 @@ requirements:
     - r-shinythemes
     - r-shinytoastr
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dt
     - r-htmlwidgets
diff --git a/recipes/bioconductor-biocio/meta.yaml b/recipes/bioconductor-biocio/meta.yaml
index 6daf6e7f521b9..71881e468ca28 100644
--- a/recipes/bioconductor-biocio/meta.yaml
+++ b/recipes/bioconductor-biocio/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "BiocIO" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ac5aad476739475cfec311c8f28e770b
+  md5: 6e0c18bdf6d9f707f9d1e431400fa1c7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biocio", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-biocneighbors/meta.yaml b/recipes/bioconductor-biocneighbors/meta.yaml
index a44d39cfbe661..ed7fc9a00824d 100644
--- a/recipes/bioconductor-biocneighbors/meta.yaml
+++ b/recipes/bioconductor-biocneighbors/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "BiocNeighbors" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e87784c01c3e3c48735ebb1d01ff80f0
+  md5: 3cfb96ab6d42068c5b875fa6fcefd779
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biocneighbors", max_pin="x.x") }}'
 # Suggests: testthat, BiocStyle, knitr, rmarkdown, FNN, RcppAnnoy, RcppHNSW
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-matrix
     - r-rcpp
@@ -30,8 +31,8 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-matrix
     - r-rcpp
@@ -45,8 +46,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-3
+  license: GPL-3-only
   summary: 'Nearest Neighbor Detection for Bioconductor Packages'
   description: 'Implements exact and approximate methods for nearest neighbor detection, in a framework that allows them to be easily switched within Bioconductor packages or workflows. Exact searches can be performed using the k-means for k-nearest neighbors algorithm or with vantage point trees. Approximate searches can be performed using the Annoy or HNSW libraries. Searching on either Euclidean or Manhattan distances is supported. Parallelization is achieved for all methods by using BiocParallel. Functions are also provided to search for all neighbors within a given distance.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
-
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
+    - usegalaxy-eu:{{ name|lower }}
diff --git a/recipes/bioconductor-bioconcotk/meta.yaml b/recipes/bioconductor-bioconcotk/meta.yaml
index 5d7192e625bf5..278c1af519595 100644
--- a/recipes/bioconductor-bioconcotk/meta.yaml
+++ b/recipes/bioconductor-bioconcotk/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "BiocOncoTK" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 271d492c165d6350550a05949466289f
+  md5: 2cd117f19ec3c614a5bcb1d8b27b6e64
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bioconcotk", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, dbplyr, org.Hs.eg.db, MultiAssayExperiment, BiocStyle, ontoProc, ontologyPlot, pogos, GenomeInfoDb, restfulSE (>= 1.3.7), BiocFileCache, TxDb.Hsapiens.UCSC.hg19.knownGene, Biobase, TxDb.Hsapiens.UCSC.hg18.knownGene, reshape2, testthat, AnnotationDbi, FDb.InfiniumMethylation.hg19, EnsDb.Hsapiens.v75, rmarkdown, rhdf5client, AnnotationHub
 requirements:
   host:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-curatedtcgadata >=1.22.0,<1.23.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-curatedtcgadata >=1.24.0,<1.25.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bigrquery
     - r-car
@@ -46,15 +47,15 @@ requirements:
     - r-scales
     - r-shiny
   run:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-curatedtcgadata >=1.22.0,<1.23.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-curatedtcgadata >=1.24.0,<1.25.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bigrquery
     - r-car
diff --git a/recipes/bioconductor-biocor/meta.yaml b/recipes/bioconductor-biocor/meta.yaml
index 4b62b4d930e79..4f9b1efe69ee1 100644
--- a/recipes/bioconductor-biocor/meta.yaml
+++ b/recipes/bioconductor-biocor/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "BioCor" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1ac6d44e021d256002b563d53a8ac9ef
+  md5: 5d061581890948dc4341346b82f8d170
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biocor", max_pin="x.x") }}'
   noarch: generic
-# Suggests: airway, BiocStyle, boot, DESeq2, GOSemSim, Hmisc, knitr (>= 1.35), org.Hs.eg.db, reactome.db, rmarkdown, spelling, targetscan.Hs.eg.db, testthat, WGCNA
+# Suggests: airway, BiocStyle, boot, DESeq2, ggplot2 (>= 3.4.1), GOSemSim, Hmisc, knitr (>= 1.35), org.Hs.eg.db, reactome.db, rmarkdown, spelling, targetscan.Hs.eg.db, testthat, WGCNA
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
     - r-base
     - r-matrix
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
     - r-base
     - r-matrix
 test:
diff --git a/recipes/bioconductor-biocparallel/meta.yaml b/recipes/bioconductor-biocparallel/meta.yaml
index 1af1c54af1acc..29a36dc28da04 100644
--- a/recipes/bioconductor-biocparallel/meta.yaml
+++ b/recipes/bioconductor-biocparallel/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.2" %}
+{% set version = "1.36.0" %}
 {% set name = "BiocParallel" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fe2e530471e5ecb6a9f74f1f43cb4efe
+  md5: a6a331ac453920e713836ddd0de38e25
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biocparallel", max_pin="x.x") }}'
 # Suggests: BiocGenerics, tools, foreach, BBmisc, doParallel, GenomicRanges, RNAseqData.HNRNPC.bam.chr14, TxDb.Hsapiens.UCSC.hg19.knownGene, VariantAnnotation, Rsamtools, GenomicAlignments, ShortRead, RUnit, BiocStyle, knitr, batchtools, data.table
 # SystemRequirements: C++11
 requirements:
@@ -51,6 +52,8 @@ about:
   description: 'This package provides modified versions and novel implementation of functions for parallel evaluation, tailored to use with Bioconductor objects.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:biocparallel
     - doi:10.1214/14-STS476
diff --git a/recipes/bioconductor-biocpkgtools/meta.yaml b/recipes/bioconductor-biocpkgtools/meta.yaml
index 2351fc85c2cd0..4c6bab59e87ca 100644
--- a/recipes/bioconductor-biocpkgtools/meta.yaml
+++ b/recipes/bioconductor-biocpkgtools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "BiocPkgTools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5945211cb859f579d7b1900f8c0877d1
+  md5: a0ab7353a78b22b286d22520faff6142
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biocpkgtools", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, tm, lubridate, visNetwork, clipr, blastula, kableExtra, DiagrammeR, SummarizedExperiment
 # SystemRequirements: mailsend-go
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocviews >=1.68.0,<1.69.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocviews >=1.70.0,<1.71.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
     - r-base
     - r-biocmanager
     - r-dplyr
@@ -45,10 +46,10 @@ requirements:
     - r-tibble
     - r-xml2
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocviews >=1.68.0,<1.69.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocviews >=1.70.0,<1.71.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
     - r-base
     - r-biocmanager
     - r-dplyr
diff --git a/recipes/bioconductor-biocset/meta.yaml b/recipes/bioconductor-biocset/meta.yaml
index 5b0ccad529798..e2086fa5fd45a 100644
--- a/recipes/bioconductor-biocset/meta.yaml
+++ b/recipes/bioconductor-biocset/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "BiocSet" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 643105ff3920c099e3713e749f724aac
+  md5: 69ab960333325b038fb2379781fe36c3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biocset", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GSEABase, airway, org.Hs.eg.db, DESeq2, limma, BiocFileCache, GO.db, testthat, knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocio >=1.10.0,<1.11.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocio >=1.12.0,<1.13.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-ontologyindex
@@ -33,10 +34,10 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocio >=1.10.0,<1.11.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocio >=1.12.0,<1.13.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-ontologyindex
diff --git a/recipes/bioconductor-biocsingular/meta.yaml b/recipes/bioconductor-biocsingular/meta.yaml
index 7fea0c7847a07..45a90cc65e135 100644
--- a/recipes/bioconductor-biocsingular/meta.yaml
+++ b/recipes/bioconductor-biocsingular/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "BiocSingular" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: df6d2dd2e0de6864dcc488127f9b0621
+  md5: 9b4158e143f2cbefc140228c13090b35
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biocsingular", max_pin="x.x") }}'
 # Suggests: testthat, BiocStyle, knitr, rmarkdown, ResidualMatrix
-# SystemRequirements: C++11
+# SystemRequirements: C++17
 requirements:
   host:
-    - 'bioconductor-beachmat >=2.16.0,<2.17.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scaledmatrix >=1.8.0,<1.9.0'
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scaledmatrix >=1.10.0,<1.11.0'
     - r-base
     - r-irlba
     - r-matrix
@@ -35,12 +36,12 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-beachmat >=2.16.0,<2.17.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scaledmatrix >=1.8.0,<1.9.0'
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scaledmatrix >=1.10.0,<1.11.0'
     - r-base
     - r-irlba
     - r-matrix
@@ -55,8 +56,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-3
+  license: GPL-3.0-only
   summary: 'Singular Value Decomposition for Bioconductor Packages'
   description: 'Implements exact and approximate methods for singular value decomposition and principal components analysis, in a framework that allows them to be easily switched within Bioconductor packages or workflows. Where possible, parallelization is achieved using the BiocParallel framework.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
diff --git a/recipes/bioconductor-biocsklearn/meta.yaml b/recipes/bioconductor-biocsklearn/meta.yaml
index d18885bab9193..5974e5fdc00d4 100644
--- a/recipes/bioconductor-biocsklearn/meta.yaml
+++ b/recipes/bioconductor-biocsklearn/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "BiocSklearn" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 92331b92237b4a3e82af8e2679cdb576
+  md5: a3df49031172bfd2b2a3b1c242b7dd40
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biocsklearn", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, restfulSE, HDF5Array, BiocStyle, rmarkdown, knitr
 # SystemRequirements: python (>= 2.7), sklearn, numpy, pandas, h5py
 requirements:
   host:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-reticulate
     - 'python >=2.7'
   run:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-reticulate
     - 'python >=2.7'
diff --git a/recipes/bioconductor-biocstyle/meta.yaml b/recipes/bioconductor-biocstyle/meta.yaml
index d520d23a37171..0f8df92a25fe6 100644
--- a/recipes/bioconductor-biocstyle/meta.yaml
+++ b/recipes/bioconductor-biocstyle/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.28.0" %}
+{% set version = "2.30.0" %}
 {% set name = "BiocStyle" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 91272b7821e6d3955aab1ec46c5c8491
+  md5: 22ceacb6ab374657de48283e78dedbb5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biocstyle", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, RUnit, htmltools
 requirements:
diff --git a/recipes/bioconductor-biocthis/meta.yaml b/recipes/bioconductor-biocthis/meta.yaml
index fbb614fc53920..6e1853af5c371 100644
--- a/recipes/bioconductor-biocthis/meta.yaml
+++ b/recipes/bioconductor-biocthis/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.3" %}
+{% set version = "1.12.0" %}
 {% set name = "biocthis" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 5f348f9b54ba6845ace32212b709dd64
+  md5: 7ebf8e46d2b20a3a2bae3cc7a36264d5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biocthis", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, covr, devtools, knitr, pkgdown, RefManageR, rmarkdown, sessioninfo, testthat, utils
 requirements:
diff --git a/recipes/bioconductor-biocversion/meta.yaml b/recipes/bioconductor-biocversion/meta.yaml
index d9949d2b05ba8..2f6a6eaf4f1d2 100644
--- a/recipes/bioconductor-biocversion/meta.yaml
+++ b/recipes/bioconductor-biocversion/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.1" %}
+{% set version = "3.18.1" %}
 {% set name = "BiocVersion" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9fea6248fd1d5c6ef5f4c00848f870b4
+  md5: 46dbe2f6ca9c058b24da1bd98f79631e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biocversion", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-biocviews/meta.yaml b/recipes/bioconductor-biocviews/meta.yaml
index d9d6ad8abd1a4..0627cb2e4f0f5 100644
--- a/recipes/bioconductor-biocviews/meta.yaml
+++ b/recipes/bioconductor-biocviews/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.68.1" %}
+{% set version = "1.70.0" %}
 {% set name = "biocViews" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6b6115ebd1436da570b59dbbd35a9fa0
+  md5: e258342a57f06fa23f3732c75539c58d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biocviews", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, knitr, commonmark, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
     - r-base
     - r-biocmanager
     - r-rcurl
     - r-runit
     - r-xml
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
     - r-base
     - r-biocmanager
     - r-rcurl
diff --git a/recipes/bioconductor-biocworkflowtools/meta.yaml b/recipes/bioconductor-biocworkflowtools/meta.yaml
index ae38c9e0456e1..800ffd008347d 100644
--- a/recipes/bioconductor-biocworkflowtools/meta.yaml
+++ b/recipes/bioconductor-biocworkflowtools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "BiocWorkflowTools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,16 +11,17 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6696a65d716c89b060c4cee07dcded96
+  md5: 412d30d47953d51e35e9fa188e28841e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biocworkflowtools", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
     - r-base
     - r-bookdown
     - r-git2r
@@ -31,7 +32,7 @@ requirements:
     - r-stringr
     - r-usethis
   run:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
     - r-base
     - r-bookdown
     - r-git2r
diff --git a/recipes/bioconductor-biodb/meta.yaml b/recipes/bioconductor-biodb/meta.yaml
index fe5c913eb0e61..ad39c52b330b1 100644
--- a/recipes/bioconductor-biodb/meta.yaml
+++ b/recipes/bioconductor-biodb/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "biodb" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 2140155f6d5c482557f7838661adbfe7
+  md5: 0716a73291fb80cc3d1f0909549cbaa8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
-# Suggests: BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr, rmarkdown, covr, xml2, git2r
+  run_exports: '{{ pin_subpackage("bioconductor-biodb", max_pin="x.x") }}'
+# Suggests: BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr, rmarkdown, covr, xml2
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
     - r-base
     - r-chk
+    - r-git2r
     - r-jsonlite
     - r-lgr
     - r-lifecycle
@@ -42,9 +44,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
     - r-base
     - r-chk
+    - r-git2r
     - r-jsonlite
     - r-lgr
     - r-lifecycle
diff --git a/recipes/bioconductor-biodbchebi/meta.yaml b/recipes/bioconductor-biodbchebi/meta.yaml
index 4551636ba0935..4371bc0a4a43f 100644
--- a/recipes/bioconductor-biodbchebi/meta.yaml
+++ b/recipes/bioconductor-biodbchebi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "biodbChebi" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4ba9df9eafa05f15f032fec477606a21
+  md5: 31f6ed155e1126b62c5a6cd7fbd6c742
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biodbchebi", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr, rmarkdown, lgr
 requirements:
   host:
-    - 'bioconductor-biodb >=1.8.0,<1.9.0'
+    - 'bioconductor-biodb >=1.10.0,<1.11.0'
     - r-base
     - r-r6
   run:
-    - 'bioconductor-biodb >=1.8.0,<1.9.0'
+    - 'bioconductor-biodb >=1.10.0,<1.11.0'
     - r-base
     - r-r6
 test:
diff --git a/recipes/bioconductor-biodbexpasy/meta.yaml b/recipes/bioconductor-biodbexpasy/meta.yaml
index 8bf72de29d06f..11a9662f7a468 100644
--- a/recipes/bioconductor-biodbexpasy/meta.yaml
+++ b/recipes/bioconductor-biodbexpasy/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "biodbExpasy" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 98e5ae0c72615b4f1b7d1d2cf0398f7c
+  md5: b4c2596f2efc76e3ba7cba00fb3a6177
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biodbexpasy", max_pin="x.x") }}'
   noarch: generic
 # Suggests: roxygen2, BiocStyle, testthat (>= 2.0.0), devtools, knitr, rmarkdown, covr, lgr
 requirements:
   host:
-    - 'bioconductor-biodb >=1.8.0,<1.9.0'
+    - 'bioconductor-biodb >=1.10.0,<1.11.0'
     - r-base
     - r-chk
     - r-r6
     - r-stringr
   run:
-    - 'bioconductor-biodb >=1.8.0,<1.9.0'
+    - 'bioconductor-biodb >=1.10.0,<1.11.0'
     - r-base
     - r-chk
     - r-r6
diff --git a/recipes/bioconductor-biodbhmdb/meta.yaml b/recipes/bioconductor-biodbhmdb/meta.yaml
index ad27b96d7ac9f..43819b75e957a 100644
--- a/recipes/bioconductor-biodbhmdb/meta.yaml
+++ b/recipes/bioconductor-biodbhmdb/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "biodbHmdb" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 51bfd87e591eab475ec0498eaf805fd1
+  md5: b34c06c2ce8865b7eebedb869a1ab505
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biodbhmdb", max_pin="x.x") }}'
 # Suggests: BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr, rmarkdown, covr, lgr
 requirements:
   host:
-    - 'bioconductor-biodb >=1.8.0,<1.9.0'
+    - 'bioconductor-biodb >=1.10.0,<1.11.0'
     - r-base
     - r-r6
     - r-rcpp
     - r-testthat
+    - r-zip
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biodb >=1.8.0,<1.9.0'
+    - 'bioconductor-biodb >=1.10.0,<1.11.0'
     - r-base
     - r-r6
     - r-rcpp
     - r-testthat
+    - r-zip
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
diff --git a/recipes/bioconductor-biodbkegg/meta.yaml b/recipes/bioconductor-biodbkegg/meta.yaml
index 4932d2d81b630..89f789f680e40 100644
--- a/recipes/bioconductor-biodbkegg/meta.yaml
+++ b/recipes/bioconductor-biodbkegg/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "biodbKegg" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4e55170ed0b1512e058a3546348556e6
+  md5: 868600b40fc5ce4c38ced82df890400d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biodbkegg", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr, rmarkdown, igraph, magick, lgr
 requirements:
   host:
-    - 'bioconductor-biodb >=1.8.0,<1.9.0'
+    - 'bioconductor-biodb >=1.10.0,<1.11.0'
     - r-base
     - r-chk
     - r-lifecycle
     - r-r6
   run:
-    - 'bioconductor-biodb >=1.8.0,<1.9.0'
+    - 'bioconductor-biodb >=1.10.0,<1.11.0'
     - r-base
     - r-chk
     - r-lifecycle
diff --git a/recipes/bioconductor-biodblipidmaps/meta.yaml b/recipes/bioconductor-biodblipidmaps/meta.yaml
index d5aa32c044891..49e10385518b5 100644
--- a/recipes/bioconductor-biodblipidmaps/meta.yaml
+++ b/recipes/bioconductor-biodblipidmaps/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "biodbLipidmaps" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4bcb13e4a81639403a3203fe973736d1
+  md5: 996886d796e7ffba7a1a19598573f9c8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biodblipidmaps", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, lgr, roxygen2, devtools, testthat (>= 2.0.0), knitr, rmarkdown, covr
 requirements:
   host:
-    - 'bioconductor-biodb >=1.8.0,<1.9.0'
+    - 'bioconductor-biodb >=1.10.0,<1.11.0'
     - r-base
     - r-lifecycle
     - r-r6
   run:
-    - 'bioconductor-biodb >=1.8.0,<1.9.0'
+    - 'bioconductor-biodb >=1.10.0,<1.11.0'
     - r-base
     - r-lifecycle
     - r-r6
diff --git a/recipes/bioconductor-biodbmirbase/meta.yaml b/recipes/bioconductor-biodbmirbase/meta.yaml
index f38a72b0e2629..3fc5c553215d5 100644
--- a/recipes/bioconductor-biodbmirbase/meta.yaml
+++ b/recipes/bioconductor-biodbmirbase/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.5.0" %}
 {% set name = "biodbMirbase" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 73a96ab8d432ed80ffc987b3f318044e
+  md5: af331cadc2f7575e4dbf5345f19c61e6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biodbmirbase", max_pin="x.x") }}'
   noarch: generic
 # Suggests: roxygen2, BiocStyle, testthat (>= 2.0.0), devtools, knitr, rmarkdown, covr, lgr
 requirements:
   host:
-    - 'bioconductor-biodb >=1.8.0,<1.9.0'
+    - 'bioconductor-biodb >=1.10.0,<1.11.0'
     - r-base
     - r-chk
     - r-r6
     - r-stringr
   run:
-    - 'bioconductor-biodb >=1.8.0,<1.9.0'
+    - 'bioconductor-biodb >=1.10.0,<1.11.0'
     - r-base
     - r-chk
     - r-r6
diff --git a/recipes/bioconductor-biodbncbi/meta.yaml b/recipes/bioconductor-biodbncbi/meta.yaml
index e8985870974a5..95b4d06ff4236 100644
--- a/recipes/bioconductor-biodbncbi/meta.yaml
+++ b/recipes/bioconductor-biodbncbi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "biodbNcbi" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a8e830a9655fd75706c8d4c75440ddec
+  md5: 5d2c3e8eade431a86e13d54be468832e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biodbncbi", max_pin="x.x") }}'
   noarch: generic
 # Suggests: roxygen2, BiocStyle, testthat (>= 2.0.0), devtools, knitr, rmarkdown, covr, lgr
 requirements:
   host:
-    - 'bioconductor-biodb >=1.8.0,<1.9.0'
+    - 'bioconductor-biodb >=1.10.0,<1.11.0'
     - r-base
     - r-chk
     - r-r6
     - r-xml
   run:
-    - 'bioconductor-biodb >=1.8.0,<1.9.0'
+    - 'bioconductor-biodb >=1.10.0,<1.11.0'
     - r-base
     - r-chk
     - r-r6
diff --git a/recipes/bioconductor-biodbnci/meta.yaml b/recipes/bioconductor-biodbnci/meta.yaml
index 501ca82a668bf..cc1d3f3405d9c 100644
--- a/recipes/bioconductor-biodbnci/meta.yaml
+++ b/recipes/bioconductor-biodbnci/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "biodbNci" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,16 +11,17 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f9eeae84d0fb3daf211823d114a5f772
+  md5: 6dcd43d5c282054f4edfef08a2f597cd
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biodbnci", max_pin="x.x") }}'
 # Suggests: roxygen2, BiocStyle, testthat (>= 2.0.0), devtools, knitr, rmarkdown, covr, lgr
 requirements:
   host:
-    - 'bioconductor-biodb >=1.8.0,<1.9.0'
+    - 'bioconductor-biodb >=1.10.0,<1.11.0'
     - r-base
     - r-chk
     - r-r6
@@ -29,7 +30,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biodb >=1.8.0,<1.9.0'
+    - 'bioconductor-biodb >=1.10.0,<1.11.0'
     - r-base
     - r-chk
     - r-r6
diff --git a/recipes/bioconductor-biodbuniprot/meta.yaml b/recipes/bioconductor-biodbuniprot/meta.yaml
index af50105117d6a..a4e0d9a6b658e 100644
--- a/recipes/bioconductor-biodbuniprot/meta.yaml
+++ b/recipes/bioconductor-biodbuniprot/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "biodbUniprot" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cc363aa65d5193c61a478401c9f20b91
+  md5: f4f5bcc32018b6472836efcc8c82671c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biodbuniprot", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr, rmarkdown, lgr, covr
 requirements:
   host:
-    - 'bioconductor-biodb >=1.8.0,<1.9.0'
+    - 'bioconductor-biodb >=1.10.0,<1.11.0'
     - r-base
     - r-r6
   run:
-    - 'bioconductor-biodb >=1.8.0,<1.9.0'
+    - 'bioconductor-biodb >=1.10.0,<1.11.0'
     - r-base
     - r-r6
 test:
diff --git a/recipes/bioconductor-biodist/meta.yaml b/recipes/bioconductor-biodist/meta.yaml
index b84db1943e599..638ca746d888c 100644
--- a/recipes/bioconductor-biodist/meta.yaml
+++ b/recipes/bioconductor-biodist/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "bioDist" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b0ac96c334d2d0703297b260b9b9535c
+  md5: a0c907dc82834b4771074cd8164cf773
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biodist", max_pin="x.x") }}'
   noarch: generic
 # Suggests: locfit
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-kernsmooth
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-kernsmooth
 test:
diff --git a/recipes/bioconductor-bioimagedbs/meta.yaml b/recipes/bioconductor-bioimagedbs/meta.yaml
index 088193acc1f0a..f7ebe42cadf2b 100644
--- a/recipes/bioconductor-bioimagedbs/meta.yaml
+++ b/recipes/bioconductor-bioimagedbs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "BioImageDbs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b8af4040411218fcfd81ab927747eb48
+  md5: 785e9ea81ef5699d70af969fd8d4703d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bioimagedbs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, purrr
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-animation
     - r-base
     - r-einsum
@@ -33,9 +34,9 @@ requirements:
     - r-markdown
     - r-rmarkdown
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-animation
     - r-base
     - r-einsum
@@ -45,7 +46,7 @@ requirements:
     - r-markdown
     - r-rmarkdown
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bioimagedbs/post-link.sh b/recipes/bioconductor-bioimagedbs/post-link.sh
index 97c361a68d9de..908f4e675bd43 100644
--- a/recipes/bioconductor-bioimagedbs/post-link.sh
+++ b/recipes/bioconductor-bioimagedbs/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "bioimagedbs-1.8.0"
+installBiocDataPackage.sh "bioimagedbs-1.10.0"
diff --git a/recipes/bioconductor-biomart/meta.yaml b/recipes/bioconductor-biomart/meta.yaml
index 061a7013a2d8c..9682b4d2750eb 100644
--- a/recipes/bioconductor-biomart/meta.yaml
+++ b/recipes/bioconductor-biomart/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.56.1" %}
+{% set version = "2.58.0" %}
 {% set name = "biomaRt" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a3ebbe9c8774fc0f1cb42a6a5c3d4ef2
+  md5: dd18037fef27f7c50af56f5da2086e04
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biomart", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, mockery, rmarkdown, testthat, webmockr
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
     - r-base
     - r-digest
     - r-httr
@@ -32,8 +33,8 @@ requirements:
     - 'r-xml >=3.99-0.7'
     - r-xml2
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
     - r-base
     - r-digest
     - r-httr
diff --git a/recipes/bioconductor-biomartgogenesets/meta.yaml b/recipes/bioconductor-biomartgogenesets/meta.yaml
new file mode 100644
index 0000000000000..df4009848c019
--- /dev/null
+++ b/recipes/bioconductor-biomartgogenesets/meta.yaml
@@ -0,0 +1,43 @@
+{% set version = "0.99.11" %}
+{% set name = "BioMartGOGeneSets" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: f96a12703fd2f9c357442a60e5f2c764
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biomartgogenesets", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: biomaRt, GO.db, GenomeInfoDb, knitr, testthat, GetoptLong, DT
+requirements:
+  host:
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - r-base
+  run:
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - r-base
+    - curl
+    - 'bioconductor-data-packages >=20231203'
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/html/{{ name }}.html'
+  license: 'MIT + file LICENSE'
+  summary: 'Gene Ontology Gene Sets from BioMart'
+  description: 'It contains pre-compiled Gene Ontology gene sets for all organisms available on the Ensembl database. It also includes GO gene sets for organisms on Ensembl Plants, Ensembl Metazoa, Ensembl Fungi and Ensembl Protists. The data was collected with the biomaRt package.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-biomartgogenesets/post-link.sh b/recipes/bioconductor-biomartgogenesets/post-link.sh
new file mode 100644
index 0000000000000..19d29150eab0b
--- /dev/null
+++ b/recipes/bioconductor-biomartgogenesets/post-link.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+installBiocDataPackage.sh "biomartgogenesets-0.99.11"
diff --git a/recipes/bioconductor-biomartgogenesets/pre-unlink.sh b/recipes/bioconductor-biomartgogenesets/pre-unlink.sh
new file mode 100644
index 0000000000000..ea56fd0d96116
--- /dev/null
+++ b/recipes/bioconductor-biomartgogenesets/pre-unlink.sh
@@ -0,0 +1 @@
+R CMD REMOVE --library=$PREFIX/lib/R/library/ BioMartGOGeneSets
diff --git a/recipes/bioconductor-biomformat/meta.yaml b/recipes/bioconductor-biomformat/meta.yaml
index 3f733d767388d..9baeccbf7f291 100644
--- a/recipes/bioconductor-biomformat/meta.yaml
+++ b/recipes/bioconductor-biomformat/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "biomformat" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: eff7e3b0449e543e14b8e3c4169a3e11
+  md5: f35aaf72b454bc1872f1247642029006
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biomformat", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 0.10), knitr (>= 1.10), BiocStyle (>= 1.6), rmarkdown (>= 0.7)
 requirements:
   host:
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
     - r-base
     - 'r-jsonlite >=0.9.16'
     - 'r-matrix >=1.2'
     - 'r-plyr >=1.8'
   run:
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
     - r-base
     - 'r-jsonlite >=0.9.16'
     - 'r-matrix >=1.2'
diff --git a/recipes/bioconductor-biomvcclass/meta.yaml b/recipes/bioconductor-biomvcclass/meta.yaml
index 9dda455c81080..63e1563014b71 100644
--- a/recipes/bioconductor-biomvcclass/meta.yaml
+++ b/recipes/bioconductor-biomvcclass/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.68.0" %}
+{% set version = "1.70.0" %}
 {% set name = "BioMVCClass" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7186d0439ac65d30681067b145eefa04
+  md5: 72d762b9a59c4b75d79c378792250b48
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biomvcclass", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-mvcclass >=1.74.0,<1.75.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-mvcclass >=1.76.0,<1.77.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-mvcclass >=1.74.0,<1.75.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-mvcclass >=1.76.0,<1.77.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-biomvrcns/build.sh b/recipes/bioconductor-biomvrcns/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-biomvrcns/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-biomvrcns/meta.yaml b/recipes/bioconductor-biomvrcns/meta.yaml
new file mode 100644
index 0000000000000..29c5079d7968d
--- /dev/null
+++ b/recipes/bioconductor-biomvrcns/meta.yaml
@@ -0,0 +1,49 @@
+{% set version = "1.42.1" %}
+{% set name = "biomvRCNS" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 592c6d6f34e855eed52b4591b6b065e1
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biomvrcns", max_pin="x.x") }}'
+# Suggests: cluster, parallel, GenomicFeatures, dynamicTreeCut, Rsamtools, TxDb.Hsapiens.UCSC.hg19.knownGene
+requirements:
+  host:
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - r-base
+    - r-mvtnorm
+    - libblas
+    - liblapack
+  run:
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - r-base
+    - r-mvtnorm
+  build:
+    - {{ compiler('c') }}
+    - make
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'GPL (>= 2)'
+  summary: 'Copy Number study and Segmentation for multivariate biological data'
+  description: 'In this package, a Hidden Semi Markov Model (HSMM) and one homogeneous segmentation model are designed and implemented for segmentation genomic data, with the aim of assisting in transcripts detection using high throughput technology like RNA-seq or tiling array, and copy number analysis using aCGH or sequencing.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-bionar/meta.yaml b/recipes/bioconductor-bionar/meta.yaml
index db31ce7f4be80..a1ef1fc42337d 100644
--- a/recipes/bioconductor-bionar/meta.yaml
+++ b/recipes/bioconductor-bionar/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.4" %}
+{% set version = "1.4.0" %}
 {% set name = "BioNAR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f78a59dea815f7b7cfad0682cae32708
+  md5: 4cbc1fe5bd753444b3470a317029a885
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bionar", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr, rmarkdown, igraphdata, testthat (>= 3.0.0), vdiffr, devtools, pander, plotly, randomcoloR
+# Suggests: knitr, BiocStyle, magick, rmarkdown, igraphdata, testthat (>= 3.0.0), vdiffr, devtools, pander, plotly, randomcoloR
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-synaptome.db >=0.99.0,<0.100.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - r-clustercons
     - r-cowplot
@@ -35,6 +35,7 @@ requirements:
     - r-ggrepel
     - 'r-igraph >=1.4.0'
     - r-latex2exp
+    - r-matrix
     - r-minpack.lm
     - r-powerlaw
     - r-rdpack
@@ -45,11 +46,10 @@ requirements:
     - r-viridis
     - r-wgcna
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-synaptome.db >=0.99.0,<0.100.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - r-clustercons
     - r-cowplot
@@ -59,6 +59,7 @@ requirements:
     - r-ggrepel
     - 'r-igraph >=1.4.0'
     - r-latex2exp
+    - r-matrix
     - r-minpack.lm
     - r-powerlaw
     - r-rdpack
diff --git a/recipes/bioconductor-bionero/meta.yaml b/recipes/bioconductor-bionero/meta.yaml
index f3df186d26e2b..2ebcf257d05b5 100644
--- a/recipes/bioconductor-bionero/meta.yaml
+++ b/recipes/bioconductor-bionero/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.5" %}
+{% set version = "1.10.0" %}
 {% set name = "BioNERO" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e673d1c24445c648a2a152f8408d4f09
+  md5: 4cc77a8b8eb3cff071fbe5df15a6eb67
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bionero", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat (>= 3.0.0), BiocStyle, DESeq2, networkD3, covr
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-genie3 >=1.22.0,<1.23.0'
-    - 'bioconductor-minet >=3.58.0,<3.59.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-genie3 >=1.24.0,<1.25.0'
+    - 'bioconductor-minet >=3.60.0,<3.61.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-dynamictreecut
     - r-ggdendro
@@ -43,12 +44,12 @@ requirements:
     - r-rlang
     - r-wgcna
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-genie3 >=1.22.0,<1.23.0'
-    - 'bioconductor-minet >=3.58.0,<3.59.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-genie3 >=1.24.0,<1.25.0'
+    - 'bioconductor-minet >=3.60.0,<3.61.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-dynamictreecut
     - r-ggdendro
diff --git a/recipes/bioconductor-bionet/meta.yaml b/recipes/bioconductor-bionet/meta.yaml
index d9adb1f066cc9..ba12d6bab333a 100644
--- a/recipes/bioconductor-bionet/meta.yaml
+++ b/recipes/bioconductor-bionet/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.60.0" %}
+{% set version = "1.62.0" %}
 {% set name = "BioNet" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7ff51b8ceee1e56fb2330eb25404c8db
+  md5: 7f2fb01406a2c73946981af9fa9c86c8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bionet", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rgl, impute, DLBCL, genefilter, xtable, ALL, limma, hgu95av2.db, XML
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
     - r-base
     - 'r-igraph >=1.0.1'
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
     - r-base
     - 'r-igraph >=1.0.1'
 test:
diff --git a/recipes/bioconductor-bionetstat/meta.yaml b/recipes/bioconductor-bionetstat/meta.yaml
index 431995c0950b8..41bdf3796be71 100644
--- a/recipes/bioconductor-bionetstat/meta.yaml
+++ b/recipes/bioconductor-bionetstat/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "BioNetStat" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ed891791ee2df9a37085262b321eb994
+  md5: c5de66f95b44aa3d98c077be1a27ae44
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bionetstat", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-pathview >=1.40.0,<1.41.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-pathview >=1.42.0,<1.43.0'
     - r-base
     - r-dt
     - r-ggplot2
@@ -40,8 +41,8 @@ requirements:
     - r-whisker
     - r-yaml
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-pathview >=1.40.0,<1.41.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-pathview >=1.42.0,<1.43.0'
     - r-base
     - r-dt
     - r-ggplot2
diff --git a/recipes/bioconductor-bioplex/meta.yaml b/recipes/bioconductor-bioplex/meta.yaml
index 4eb82837b603c..2861b800c834c 100644
--- a/recipes/bioconductor-bioplex/meta.yaml
+++ b/recipes/bioconductor-bioplex/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "BioPlex" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7a387711025f30513f09cf397c759e81
+  md5: 77e38da3b194e7776fa7007a2cef42bf
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bioplex", max_pin="x.x") }}'
   noarch: generic
 # Suggests: AnnotationDbi, AnnotationHub, BiocStyle, DEXSeq, ExperimentHub, GenomicFeatures, S4Vectors, depmap, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bioplex/post-link.sh b/recipes/bioconductor-bioplex/post-link.sh
index b3b51db1f2b19..fbbc180637819 100644
--- a/recipes/bioconductor-bioplex/post-link.sh
+++ b/recipes/bioconductor-bioplex/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "bioplex-1.6.0"
+installBiocDataPackage.sh "bioplex-1.8.0"
diff --git a/recipes/bioconductor-bioqc/meta.yaml b/recipes/bioconductor-bioqc/meta.yaml
index 41b4f55fc8ba8..857cec979ea61 100644
--- a/recipes/bioconductor-bioqc/meta.yaml
+++ b/recipes/bioconductor-bioqc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "BioQC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ef8c169f2a452603691a880ae671082d
+  md5: 9e9b338e001fdeb614091e4fa0cf50cd
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bioqc", max_pin="x.x") }}'
 # Suggests: testthat, knitr, rmarkdown, lattice, latticeExtra, rbenchmark, gplots, gridExtra, org.Hs.eg.db, hgu133plus2.db, ggplot2, reshape2, plyr, ineq, covr, limma, RColorBrewer
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
     - r-base
     - r-rcpp
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
     - r-base
     - r-rcpp
   build:
@@ -40,11 +41,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'GPL (>=3) + file LICENSE'
+  license: 'GPL-3.0-or-later + file LICENSE'
   summary: 'Detect tissue heterogeneity in expression profiles with gene sets'
   description: 'BioQC performs quality control of high-throughput expression data based on tissue gene signatures. It can detect tissue heterogeneity in gene expression data. The core algorithm is a Wilcoxon-Mann-Whitney test that is optimised for high performance.'
   license_file: LICENSE
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:bioqc
     - doi:10.1186/s12864-017-3661-2
diff --git a/recipes/bioconductor-biosigner/meta.yaml b/recipes/bioconductor-biosigner/meta.yaml
index 0e141f036996e..459f194a9ee3b 100644
--- a/recipes/bioconductor-biosigner/meta.yaml
+++ b/recipes/bioconductor-biosigner/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "biosigner" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c8af3938b2d60391138f896583af1056
+  md5: 33d853127b5e108b0fa1c5dfea22517d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biosigner", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BioMark, BiocGenerics, BiocStyle, golubEsets, hu6800.db, knitr, omicade4, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-multidataset >=1.28.0,<1.29.0'
-    - 'bioconductor-ropls >=1.32.0,<1.33.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-multidataset >=1.30.0,<1.31.0'
+    - 'bioconductor-ropls >=1.34.0,<1.35.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-e1071
     - r-randomforest
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-multidataset >=1.28.0,<1.29.0'
-    - 'bioconductor-ropls >=1.32.0,<1.33.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-multidataset >=1.30.0,<1.31.0'
+    - 'bioconductor-ropls >=1.34.0,<1.35.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-e1071
     - r-randomforest
diff --git a/recipes/bioconductor-biostrings/meta.yaml b/recipes/bioconductor-biostrings/meta.yaml
index e55e0fa2c3827..7edb20f32cd62 100644
--- a/recipes/bioconductor-biostrings/meta.yaml
+++ b/recipes/bioconductor-biostrings/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.68.1" %}
+{% set version = "2.70.1" %}
 {% set name = "Biostrings" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 12cef3d82ae3ac557ab16fabfb6f8646
+  md5: 998fdd127f3613ca157917c847e22ac3
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
-# Suggests: BSgenome (>= 1.13.14), BSgenome.Celegans.UCSC.ce2 (>= 1.3.11), BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11), BSgenome.Hsapiens.UCSC.hg18, drosophila2probe, hgu95av2probe, hgu133aprobe, GenomicFeatures (>= 1.3.14), hgu95av2cdf, affy (>= 1.41.3), affydata (>= 1.11.5), RUnit
+  run_exports: '{{ pin_subpackage("bioconductor-biostrings", max_pin="x.x") }}'
+# Suggests: BSgenome (>= 1.13.14), BSgenome.Celegans.UCSC.ce2 (>= 1.3.11), BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11), BSgenome.Hsapiens.UCSC.hg18, drosophila2probe, hgu95av2probe, hgu133aprobe, GenomicFeatures (>= 1.3.14), hgu95av2cdf, affy (>= 1.41.3), affydata (>= 1.11.5), RUnit, BiocStyle, knitr
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-crayon
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-crayon
   build:
@@ -49,6 +50,8 @@ about:
   summary: 'Efficient manipulation of biological strings'
   description: 'Memory efficient string containers, string matching algorithms, and other utilities, for fast manipulation of large biological sequences or sets of sequences.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:biostrings
     - doi:10.1038/nmeth.3252
diff --git a/recipes/bioconductor-biotip/meta.yaml b/recipes/bioconductor-biotip/meta.yaml
index db19a9a6fc203..89e01b63d03be 100644
--- a/recipes/bioconductor-biotip/meta.yaml
+++ b/recipes/bioconductor-biotip/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "BioTIP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fbfda3e6fbf559c289827a25ae5b5213
+  md5: 9a7765bd55ed7e2d7d09d4eff3b2127c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biotip", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, markdown, base, rmarkdown, ggplot2
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
     - r-base
     - r-cluster
     - r-igraph
@@ -30,8 +31,8 @@ requirements:
     - r-psych
     - r-stringr
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
     - r-base
     - r-cluster
     - r-igraph
diff --git a/recipes/bioconductor-biotmle/meta.yaml b/recipes/bioconductor-biotmle/meta.yaml
index a09ecd90c450e..b7e9320cef7ee 100644
--- a/recipes/bioconductor-biotmle/meta.yaml
+++ b/recipes/bioconductor-biotmle/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "biotmle" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 8737aaa23cc2f9fbeca57ff59fb924c4
+  md5: 10fcb7a34336492cbd49f3170a2f81ba
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biotmle", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, BiocStyle, arm, earth, ranger, SuperLearner, Matrix, DBI, biotmleData (>= 1.1.1)
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - r-dplyr
@@ -35,11 +36,11 @@ requirements:
     - r-superheat
     - r-tibble
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - r-dplyr
diff --git a/recipes/bioconductor-biotmledata/meta.yaml b/recipes/bioconductor-biotmledata/meta.yaml
index 8832917877b31..2413693fa7bec 100644
--- a/recipes/bioconductor-biotmledata/meta.yaml
+++ b/recipes/bioconductor-biotmledata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "biotmleData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e21b4d8009abb77c03a67a9115c289dc
+  md5: 8c725d5c496f9bfe7ed4b5d5c538244a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biotmledata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biobase, SummarizedExperiment
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-biotmledata/post-link.sh b/recipes/bioconductor-biotmledata/post-link.sh
index 93a932011f94d..f4cbb02679956 100644
--- a/recipes/bioconductor-biotmledata/post-link.sh
+++ b/recipes/bioconductor-biotmledata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "biotmledata-1.24.0"
+installBiocDataPackage.sh "biotmledata-1.26.0"
diff --git a/recipes/bioconductor-biovizbase/meta.yaml b/recipes/bioconductor-biovizbase/meta.yaml
index 96b433d801613..47c84b5c85b74 100644
--- a/recipes/bioconductor-biovizbase/meta.yaml
+++ b/recipes/bioconductor-biovizbase/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "biovizBase" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2849083f8ce8e17c9fbfb8448571f482
+  md5: 8430b2a7913fdcfe27b9bf52ba9aff7e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biovizbase", max_pin="x.x") }}'
 # Suggests: BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome, rtracklayer, EnsDb.Hsapiens.v75, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-dichromat
     - r-hmisc
@@ -43,20 +44,20 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-dichromat
     - r-hmisc
diff --git a/recipes/bioconductor-birewire/meta.yaml b/recipes/bioconductor-birewire/meta.yaml
index 0884d912fb1f7..94f5cee0bbfa8 100644
--- a/recipes/bioconductor-birewire/meta.yaml
+++ b/recipes/bioconductor-birewire/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.32.0" %}
+{% set version = "3.34.0" %}
 {% set name = "BiRewire" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7d54730101e7164be2148f51d78790fe
+  md5: 2539b609076f98e95e044f33fe443bdf
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-birewire", max_pin="x.x") }}'
 # Suggests: RUnit, BiocGenerics
 requirements:
   host:
diff --git a/recipes/bioconductor-biscuiteer/meta.yaml b/recipes/bioconductor-biscuiteer/meta.yaml
index 1760062a11885..ab11d6d9b3f44 100644
--- a/recipes/bioconductor-biscuiteer/meta.yaml
+++ b/recipes/bioconductor-biscuiteer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "biscuiteer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 18e07fd7cd831b02d9762a4f25b30116
+  md5: a38a486daf7d4c4dd682f20658039234
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biscuiteer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DSS, covr, knitr, rmarkdown, markdown, rlang, scmeth, pkgdown, roxygen2, testthat, QDNAseq.hg19, QDNAseq.mm10, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biscuiteerdata >=1.14.0,<1.15.0'
-    - 'bioconductor-bsseq >=1.36.0,<1.37.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-dmrseq >=1.20.0,<1.21.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biscuiteerdata >=1.16.0,<1.17.0'
+    - 'bioconductor-bsseq >=1.38.0,<1.39.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-dmrseq >=1.22.0,<1.23.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
     - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - 'bioconductor-mus.musculus >=1.3.0,<1.4.0'
-    - 'bioconductor-qdnaseq >=1.36.0,<1.37.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-qdnaseq >=1.38.0,<1.39.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-data.table
     - r-gtools
@@ -50,26 +51,26 @@ requirements:
     - r-r.utils
     - r-readr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biscuiteerdata >=1.14.0,<1.15.0'
-    - 'bioconductor-bsseq >=1.36.0,<1.37.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-dmrseq >=1.20.0,<1.21.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biscuiteerdata >=1.16.0,<1.17.0'
+    - 'bioconductor-bsseq >=1.38.0,<1.39.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-dmrseq >=1.22.0,<1.23.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
     - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - 'bioconductor-mus.musculus >=1.3.0,<1.4.0'
-    - 'bioconductor-qdnaseq >=1.36.0,<1.37.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-qdnaseq >=1.38.0,<1.39.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-data.table
     - r-gtools
diff --git a/recipes/bioconductor-biscuiteerdata/meta.yaml b/recipes/bioconductor-biscuiteerdata/meta.yaml
index d0656d7a78a17..c4cfffd5a8b7c 100644
--- a/recipes/bioconductor-biscuiteerdata/meta.yaml
+++ b/recipes/bioconductor-biscuiteerdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.1" %}
+{% set version = "1.16.0" %}
 {% set name = "biscuiteerData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 143bedc239cf56a25dc8bf6c1e98d392
+  md5: 9610f1ea2c2e8303acbb0b52204f8d3e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biscuiteerdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, markdown
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-curl
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-curl
     - curl
-    - bioconductor-data-packages>=20230713
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-biscuiteerdata/post-link.sh b/recipes/bioconductor-biscuiteerdata/post-link.sh
index 45806f68b34b3..6c22e115a9ff9 100644
--- a/recipes/bioconductor-biscuiteerdata/post-link.sh
+++ b/recipes/bioconductor-biscuiteerdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "biscuiteerdata-1.14.1"
+installBiocDataPackage.sh "biscuiteerdata-1.16.0"
diff --git a/recipes/bioconductor-biseq/meta.yaml b/recipes/bioconductor-biseq/meta.yaml
index c3e2ea0161860..93bf96e0a6e37 100644
--- a/recipes/bioconductor-biseq/meta.yaml
+++ b/recipes/bioconductor-biseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "BiSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,38 +11,39 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ef582ccfe80af188e2c95e93917112f6
+  md5: 76a46bdea0a83b3ead6a8ee87d6000ac
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-biseq", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-globaltest >=5.54.0,<5.55.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-globaltest >=5.56.0,<5.57.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-betareg
     - r-formula
     - r-lokern
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-globaltest >=5.54.0,<5.55.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-globaltest >=5.56.0,<5.57.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-betareg
     - r-formula
diff --git a/recipes/bioconductor-blacksheepr/meta.yaml b/recipes/bioconductor-blacksheepr/meta.yaml
index 6261dbb5aa447..956002139ea7c 100644
--- a/recipes/bioconductor-blacksheepr/meta.yaml
+++ b/recipes/bioconductor-blacksheepr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "blacksheepr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: ffc59bd1330fbd355d89f419d5378c36
+  md5: 464b853300f0d97e2ad8f0a4188701c4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-blacksheepr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 2.1.0), knitr, BiocStyle, rmarkdown, curl
 requirements:
   host:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-pasilla >=1.28.0,<1.29.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-pasilla >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-rcolorbrewer
     - r-viridis
   run:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-pasilla >=1.28.0,<1.29.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-pasilla >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-rcolorbrewer
diff --git a/recipes/bioconductor-bladderbatch/meta.yaml b/recipes/bioconductor-bladderbatch/meta.yaml
index e3c40acb29dbe..9eafff22e508e 100644
--- a/recipes/bioconductor-bladderbatch/meta.yaml
+++ b/recipes/bioconductor-bladderbatch/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "bladderbatch" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: ab4457a6eebb75202730d4433d4aa245
+  md5: d59d10a87e8d62c6ba10f7e9c0160a44
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bladderbatch", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bladderbatch/post-link.sh b/recipes/bioconductor-bladderbatch/post-link.sh
index 1f6b3e2258b10..fac44e79b40e2 100644
--- a/recipes/bioconductor-bladderbatch/post-link.sh
+++ b/recipes/bioconductor-bladderbatch/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "bladderbatch-1.38.0"
+installBiocDataPackage.sh "bladderbatch-1.40.0"
diff --git a/recipes/bioconductor-blima/meta.yaml b/recipes/bioconductor-blima/meta.yaml
index 0ed1506388c12..dee6d37139ead 100644
--- a/recipes/bioconductor-blima/meta.yaml
+++ b/recipes/bioconductor-blima/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "blima" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c2c14f23337c1135f6d65fd58fa7ac05
+  md5: a0d7cbb46b78eabdbc06c4ee1b417bcb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-blima", max_pin="x.x") }}'
 # Suggests: xtable, blimaTestingData, BiocStyle, illuminaHumanv4.db, lumi, knitr
 requirements:
   host:
-    - 'bioconductor-beadarray >=2.50.0,<2.51.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-beadarray >=2.52.0,<2.53.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - 'r-rcpp >=0.12.8'
     - libblas
     - liblapack
   run:
-    - 'bioconductor-beadarray >=2.50.0,<2.51.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-beadarray >=2.52.0,<2.53.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - 'r-rcpp >=0.12.8'
   build:
diff --git a/recipes/bioconductor-blimatestingdata/meta.yaml b/recipes/bioconductor-blimatestingdata/meta.yaml
index 7befc4cd40a70..6d25e2e3e3f9e 100644
--- a/recipes/bioconductor-blimatestingdata/meta.yaml
+++ b/recipes/bioconductor-blimatestingdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "blimaTestingData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 17e9a4119b1beaf61f30fbe192b9a20a
+  md5: 3ae3da97d0d020e16feee29b93c24825
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-blimatestingdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: blima, beadarray, illuminaHumanv4.db, BiocStyle
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-blimatestingdata/post-link.sh b/recipes/bioconductor-blimatestingdata/post-link.sh
index 0137332d50d47..1418b77f265e3 100644
--- a/recipes/bioconductor-blimatestingdata/post-link.sh
+++ b/recipes/bioconductor-blimatestingdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "blimatestingdata-1.20.0"
+installBiocDataPackage.sh "blimatestingdata-1.22.0"
diff --git a/recipes/bioconductor-blma/meta.yaml b/recipes/bioconductor-blma/meta.yaml
index f16f88fab8d50..acbf15edf9540 100644
--- a/recipes/bioconductor-blma/meta.yaml
+++ b/recipes/bioconductor-blma/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "BLMA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9040447a39ecba3f13decf927d02295e
+  md5: a09cb94872d4a064b9b6300945795cdf
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-blma", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-padog >=1.42.0,<1.43.0'
-    - 'bioconductor-rontotools >=2.28.0,<2.29.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-padog >=1.44.0,<1.45.0'
+    - 'bioconductor-rontotools >=2.30.0,<2.31.0'
     - r-base
     - r-gsa
     - r-metafor
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-padog >=1.42.0,<1.43.0'
-    - 'bioconductor-rontotools >=2.28.0,<2.29.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-padog >=1.44.0,<1.45.0'
+    - 'bioconductor-rontotools >=2.30.0,<2.31.0'
     - r-base
     - r-gsa
     - r-metafor
diff --git a/recipes/bioconductor-bloodcancermultiomics2017/meta.yaml b/recipes/bioconductor-bloodcancermultiomics2017/meta.yaml
index 776134ad78ca8..d6fbe40747131 100644
--- a/recipes/bioconductor-bloodcancermultiomics2017/meta.yaml
+++ b/recipes/bioconductor-bloodcancermultiomics2017/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "BloodCancerMultiOmics2017" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5d7ccf32b2249044c2b86aa4cf933372
+  md5: d2b2dcb147bf904df505fedca2d1ea9e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bloodcancermultiomics2017", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, abind, AnnotationDbi, biomaRt, broom, colorspace, cowplot, dendsort, doParallel, foreach, forestplot, genefilter, ggbeeswarm, ggtern, gridExtra, hexbin, IHW, limma, magrittr, Matrix, maxstat, nat, org.Hs.eg.db, pheatmap, piano, readxl, Rtsne, tidyr, xtable
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-beeswarm
     - r-devtools
@@ -39,9 +40,9 @@ requirements:
     - r-survival
     - r-tibble
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-beeswarm
     - r-devtools
@@ -57,7 +58,7 @@ requirements:
     - r-survival
     - r-tibble
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bloodcancermultiomics2017/post-link.sh b/recipes/bioconductor-bloodcancermultiomics2017/post-link.sh
index 6a011d5316aed..84e46bc91c92a 100644
--- a/recipes/bioconductor-bloodcancermultiomics2017/post-link.sh
+++ b/recipes/bioconductor-bloodcancermultiomics2017/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "bloodcancermultiomics2017-1.20.0"
+installBiocDataPackage.sh "bloodcancermultiomics2017-1.22.0"
diff --git a/recipes/bioconductor-bloodgen3module/meta.yaml b/recipes/bioconductor-bloodgen3module/meta.yaml
index 88890177b4894..aad99351531e3 100644
--- a/recipes/bioconductor-bloodgen3module/meta.yaml
+++ b/recipes/bioconductor-bloodgen3module/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "BloodGen3Module" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 37a265fa33d837fb54956f3347976869
+  md5: c9957080f8c55f99ebcc89cdc652deb9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bloodgen3module", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, devtools, BiocGenerics, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-ggplot2
@@ -36,11 +37,11 @@ requirements:
     - r-testthat
     - r-v8
   run:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-ggplot2
diff --git a/recipes/bioconductor-bluster/meta.yaml b/recipes/bioconductor-bluster/meta.yaml
index 24fd7a073cdab..672e737816913 100644
--- a/recipes/bioconductor-bluster/meta.yaml
+++ b/recipes/bioconductor-bluster/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "bluster" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: a8d0bcd5ece8d29de23893d218538f35
+  md5: baf91e0700b1f49eb80522be9eb8204d
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
-# Suggests: knitr, rmarkdown, testthat, BiocStyle, dynamicTreeCut, scRNAseq, scuttle, scater, scran, pheatmap, viridis, mbkmeans, kohonen, apcluster
+  run_exports: '{{ pin_subpackage("bioconductor-bluster", max_pin="x.x") }}'
+# Suggests: knitr, rmarkdown, testthat, BiocStyle, dynamicTreeCut, scRNAseq, scuttle, scater, scran, pheatmap, viridis, mbkmeans, kohonen, apcluster, DirichletMultinomial, vegan, fastcluster
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cluster
     - r-igraph
@@ -32,9 +33,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cluster
     - r-igraph
@@ -49,8 +50,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-3
+  license: GPL-3.0-only
   summary: 'Clustering Algorithms for Bioconductor'
   description: 'Wraps common clustering algorithms in an easily extended S4 framework. Backends are implemented for hierarchical, k-means and graph-based clustering. Several utilities are also provided to compare and evaluate clustering results.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
diff --git a/recipes/bioconductor-bnbc/meta.yaml b/recipes/bioconductor-bnbc/meta.yaml
index d3820552aca7c..b60b06813c282 100644
--- a/recipes/bioconductor-bnbc/meta.yaml
+++ b/recipes/bioconductor-bnbc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.23.0" %}
 {% set name = "bnbc" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: e2882b1e727097ea7116bdb5941eabb0
+  md5: 201f8c694f60da1dfa8112194f29ca18
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bnbc", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, rmarkdown, RUnit
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-data.table
     - r-matrixstats
@@ -37,16 +38,16 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-data.table
     - r-matrixstats
diff --git a/recipes/bioconductor-bnem/meta.yaml b/recipes/bioconductor-bnem/meta.yaml
index 00b86a14d90bc..c24854a74af32 100644
--- a/recipes/bioconductor-bnem/meta.yaml
+++ b/recipes/bioconductor-bnem/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "bnem" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: cd61ea3a67e6032366b423e220d4b4de
+  md5: 84eb035082edc5cefe35763abde3093f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bnem", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr, BiocGenerics, MatrixGenerics, BiocStyle
+# Suggests: knitr, BiocGenerics, MatrixGenerics, BiocStyle, RUnit
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-cellnoptr >=1.46.0,<1.47.0'
-    - 'bioconductor-epinem >=1.24.0,<1.25.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-mnem >=1.16.0,<1.17.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-cellnoptr >=1.48.0,<1.49.0'
+    - 'bioconductor-epinem >=1.26.0,<1.27.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-mnem >=1.18.0,<1.19.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-base
     - r-binom
     - r-cluster
@@ -40,16 +41,16 @@ requirements:
     - r-rmarkdown
     - r-snowfall
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-cellnoptr >=1.46.0,<1.47.0'
-    - 'bioconductor-epinem >=1.24.0,<1.25.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-mnem >=1.16.0,<1.17.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-cellnoptr >=1.48.0,<1.49.0'
+    - 'bioconductor-epinem >=1.26.0,<1.27.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-mnem >=1.18.0,<1.19.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-base
     - r-binom
     - r-cluster
diff --git a/recipes/bioconductor-bobafit/meta.yaml b/recipes/bioconductor-bobafit/meta.yaml
index c0cc7a0e533dc..4b504236c4870 100644
--- a/recipes/bioconductor-bobafit/meta.yaml
+++ b/recipes/bioconductor-bobafit/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "BOBaFIT" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 61cff94869967960f27a430de74624d4
+  md5: 48b9cc5c35adf6469bd1dc2ca566bed1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bobafit", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, markdown, BiocStyle, knitr, testthat (>= 3.0.0), utils, testthat
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-plyranges >=1.20.0,<1.21.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
     - r-base
     - r-dplyr
     - r-ggforce
@@ -33,9 +34,9 @@ requirements:
     - r-stringr
     - r-tidyr
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-plyranges >=1.20.0,<1.21.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
     - r-base
     - r-dplyr
     - r-ggforce
diff --git a/recipes/bioconductor-bodymaprat/meta.yaml b/recipes/bioconductor-bodymaprat/meta.yaml
index 30cd298b734df..a13f963c7a9e9 100644
--- a/recipes/bioconductor-bodymaprat/meta.yaml
+++ b/recipes/bioconductor-bodymaprat/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "bodymapRat" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d15dd35c8ce1db80954afb9e4663fe29
+  md5: fc575d7f33dd1ee73f1860fb076a840b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bodymaprat", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, knitr, BiocStyle, testthat
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bodymaprat/post-link.sh b/recipes/bioconductor-bodymaprat/post-link.sh
index 86e3dad9f97d4..d4ee9d2550175 100644
--- a/recipes/bioconductor-bodymaprat/post-link.sh
+++ b/recipes/bioconductor-bodymaprat/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "bodymaprat-1.16.0"
+installBiocDataPackage.sh "bodymaprat-1.18.0"
diff --git a/recipes/bioconductor-bovine.db/meta.yaml b/recipes/bioconductor-bovine.db/meta.yaml
index ea439d5251876..29be66b899563 100644
--- a/recipes/bioconductor-bovine.db/meta.yaml
+++ b/recipes/bioconductor-bovine.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "bovine.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: dcc1180e8ac11247f9899f140082647e
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bovine.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.bt.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.bt.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.bt.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.bt.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bovine.db0/meta.yaml b/recipes/bioconductor-bovine.db0/meta.yaml
index 5708b4d9c6569..7014ea409a9c4 100644
--- a/recipes/bioconductor-bovine.db0/meta.yaml
+++ b/recipes/bioconductor-bovine.db0/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "bovine.db0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 1e268d93f6206875bd73ad2caae53f27
+  md5: 658829797db74aec87af1914483d1af7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bovine.db0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bovine.db0/post-link.sh b/recipes/bioconductor-bovine.db0/post-link.sh
index 7506bd29e27b6..0c3dc1fc3f167 100644
--- a/recipes/bioconductor-bovine.db0/post-link.sh
+++ b/recipes/bioconductor-bovine.db0/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "bovine.db0-3.17.0"
+installBiocDataPackage.sh "bovine.db0-3.18.0"
diff --git a/recipes/bioconductor-bovinecdf/meta.yaml b/recipes/bioconductor-bovinecdf/meta.yaml
index 9ad4d03a221a3..3a8ad02076f2f 100644
--- a/recipes/bioconductor-bovinecdf/meta.yaml
+++ b/recipes/bioconductor-bovinecdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "bovinecdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: e155fc7d5f84ee420d9b250a639af305
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bovinecdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bovineprobe/meta.yaml b/recipes/bioconductor-bovineprobe/meta.yaml
index 90f41fdf6fd4b..d4af93a9c72d3 100644
--- a/recipes/bioconductor-bovineprobe/meta.yaml
+++ b/recipes/bioconductor-bovineprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "bovineprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 9f9e25fc8c7a76acf541745b7c09748b
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bovineprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bprmeth/meta.yaml b/recipes/bioconductor-bprmeth/meta.yaml
index c01464ce9e050..6a3d18505b240 100644
--- a/recipes/bioconductor-bprmeth/meta.yaml
+++ b/recipes/bioconductor-bprmeth/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.1" %}
+{% set version = "1.28.0" %}
 {% set name = "BPRMeth" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4b83f314896bec3879303077f2537c62
+  md5: 8229c7c5175e3888c86a5a3a42eb7a8c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bprmeth", max_pin="x.x") }}'
 # Suggests: testthat, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-assertthat
     - r-base
     - r-cowplot
@@ -45,10 +46,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-assertthat
     - r-base
     - r-cowplot
diff --git a/recipes/bioconductor-brain/meta.yaml b/recipes/bioconductor-brain/meta.yaml
index 69cd4b403220d..f5e9400cafc79 100644
--- a/recipes/bioconductor-brain/meta.yaml
+++ b/recipes/bioconductor-brain/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "BRAIN" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e35f1ec745209c95a944114c34091b41
+  md5: 575b879f058d01202c3bc33b0ff8e3f1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-brain", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - r-lattice
     - r-polynomf
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - r-lattice
     - r-polynomf
diff --git a/recipes/bioconductor-brainflowprobes/meta.yaml b/recipes/bioconductor-brainflowprobes/meta.yaml
index 6099d55d781b5..5f35b40d260c6 100644
--- a/recipes/bioconductor-brainflowprobes/meta.yaml
+++ b/recipes/bioconductor-brainflowprobes/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "brainflowprobes" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 00cceed929cbf95e9d1dcaf2b0248933
+  md5: eb9efebe165aeeae35ccc6b115836937
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-brainflowprobes", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 2.1.0), covr
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
-    - 'bioconductor-bumphunter >=1.42.0,<1.43.0'
-    - 'bioconductor-derfinder >=1.34.0,<1.35.0'
-    - 'bioconductor-derfinderplot >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-bumphunter >=1.44.0,<1.45.0'
+    - 'bioconductor-derfinder >=1.36.0,<1.37.0'
+    - 'bioconductor-derfinderplot >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - 'bioconductor-genomicstate >=0.99.0,<0.100.0'
     - r-base
     - 'r-cowplot >=1.0.0'
     - 'r-ggplot2 >=3.1.1'
     - 'r-rcolorbrewer >=1.1'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
-    - 'bioconductor-bumphunter >=1.42.0,<1.43.0'
-    - 'bioconductor-derfinder >=1.34.0,<1.35.0'
-    - 'bioconductor-derfinderplot >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-bumphunter >=1.44.0,<1.45.0'
+    - 'bioconductor-derfinder >=1.36.0,<1.37.0'
+    - 'bioconductor-derfinderplot >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - 'bioconductor-genomicstate >=0.99.0,<0.100.0'
     - r-base
     - 'r-cowplot >=1.0.0'
diff --git a/recipes/bioconductor-branchpointer/meta.yaml b/recipes/bioconductor-branchpointer/meta.yaml
index 292fb0401dad9..b5aa55175fda0 100644
--- a/recipes/bioconductor-branchpointer/meta.yaml
+++ b/recipes/bioconductor-branchpointer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "branchpointer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: a86bfa6b36d075cba930e82d1148b850
+  md5: 7a62abd020843736b7ea125ffc4a56e0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-branchpointer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg38 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-caret
     - r-cowplot
@@ -39,14 +40,14 @@ requirements:
     - r-plyr
     - r-stringr
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg38 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-caret
     - r-cowplot
diff --git a/recipes/bioconductor-breakpointr/meta.yaml b/recipes/bioconductor-breakpointr/meta.yaml
index d84838d2737df..f401d66f805fd 100644
--- a/recipes/bioconductor-breakpointr/meta.yaml
+++ b/recipes/bioconductor-breakpointr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "breakpointR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5ba29b07c5e6f5c0972109a7dd43c32c
+  md5: 96dddc1e7bbd8b880a89f8f1be145e66
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-breakpointr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, testthat
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-breakpointrdata >=1.18.0,<1.19.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-breakpointrdata >=1.20.0,<1.21.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cowplot
     - r-doparallel
@@ -36,14 +37,14 @@ requirements:
     - r-ggplot2
     - r-gtools
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-breakpointrdata >=1.18.0,<1.19.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-breakpointrdata >=1.20.0,<1.21.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cowplot
     - r-doparallel
diff --git a/recipes/bioconductor-breakpointrdata/meta.yaml b/recipes/bioconductor-breakpointrdata/meta.yaml
index 2a17fb8938acf..904bd544168f7 100644
--- a/recipes/bioconductor-breakpointrdata/meta.yaml
+++ b/recipes/bioconductor-breakpointrdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "breakpointRdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 59535154a02ede7347b6114c11292173
+  md5: e3f74132513d150cb5d5cc62bfd49586
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-breakpointrdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle,
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-breakpointrdata/post-link.sh b/recipes/bioconductor-breakpointrdata/post-link.sh
index 12ab5d0df96bb..726ec7f9888bf 100644
--- a/recipes/bioconductor-breakpointrdata/post-link.sh
+++ b/recipes/bioconductor-breakpointrdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "breakpointrdata-1.18.0"
+installBiocDataPackage.sh "breakpointrdata-1.20.0"
diff --git a/recipes/bioconductor-breastcancermainz/meta.yaml b/recipes/bioconductor-breastcancermainz/meta.yaml
index 0d66189888bfe..e073dd94ff14c 100644
--- a/recipes/bioconductor-breastcancermainz/meta.yaml
+++ b/recipes/bioconductor-breastcancermainz/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "breastCancerMAINZ" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4d906d493af2aa3a2fbf00029aa6f843
+  md5: 2b8df5af87b71c6706f909129212b504
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-breastcancermainz", max_pin="x.x") }}'
   noarch: generic
 # Suggests: survcomp, genefu, Biobase
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-breastcancermainz/post-link.sh b/recipes/bioconductor-breastcancermainz/post-link.sh
index c37b0581a960d..4570fff6a22f3 100644
--- a/recipes/bioconductor-breastcancermainz/post-link.sh
+++ b/recipes/bioconductor-breastcancermainz/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "breastcancermainz-1.38.0"
+installBiocDataPackage.sh "breastcancermainz-1.40.0"
diff --git a/recipes/bioconductor-breastcancernki/meta.yaml b/recipes/bioconductor-breastcancernki/meta.yaml
index 6d47a0d8fb9ff..38686c35da078 100644
--- a/recipes/bioconductor-breastcancernki/meta.yaml
+++ b/recipes/bioconductor-breastcancernki/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "breastCancerNKI" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 61d8e072228b6bbb224793b35625d507
+  md5: 0a0940593d75deaed0aa6f01954cf61c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-breastcancernki", max_pin="x.x") }}'
   noarch: generic
 # Suggests: survcomp, genefu, Biobase
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-breastcancernki/post-link.sh b/recipes/bioconductor-breastcancernki/post-link.sh
index 9b89ba199b787..e92a07580eac6 100644
--- a/recipes/bioconductor-breastcancernki/post-link.sh
+++ b/recipes/bioconductor-breastcancernki/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "breastcancernki-1.38.0"
+installBiocDataPackage.sh "breastcancernki-1.40.0"
diff --git a/recipes/bioconductor-breastcancertransbig/meta.yaml b/recipes/bioconductor-breastcancertransbig/meta.yaml
index 593973e18a542..80be8500b3982 100644
--- a/recipes/bioconductor-breastcancertransbig/meta.yaml
+++ b/recipes/bioconductor-breastcancertransbig/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "breastCancerTRANSBIG" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7117b6426a4cf52736db5835ccdc4ccc
+  md5: 170d89ddd3e554da50a0b2b5d040a96e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-breastcancertransbig", max_pin="x.x") }}'
   noarch: generic
 # Suggests: survcomp, genefu, Biobase
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-breastcancertransbig/post-link.sh b/recipes/bioconductor-breastcancertransbig/post-link.sh
index 586835155b461..819f5330c62a7 100644
--- a/recipes/bioconductor-breastcancertransbig/post-link.sh
+++ b/recipes/bioconductor-breastcancertransbig/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "breastcancertransbig-1.38.0"
+installBiocDataPackage.sh "breastcancertransbig-1.40.0"
diff --git a/recipes/bioconductor-breastcancerunt/meta.yaml b/recipes/bioconductor-breastcancerunt/meta.yaml
index ea17ee7662462..938bc94e4da08 100644
--- a/recipes/bioconductor-breastcancerunt/meta.yaml
+++ b/recipes/bioconductor-breastcancerunt/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "breastCancerUNT" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fab6de14673763f649a3cfd14fc62579
+  md5: 31e1b6d7e34b4acb9207e3e152539166
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-breastcancerunt", max_pin="x.x") }}'
   noarch: generic
 # Suggests: survcomp, genefu, Biobase
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-breastcancerunt/post-link.sh b/recipes/bioconductor-breastcancerunt/post-link.sh
index 6408e7184bd12..0b186b89bdffc 100644
--- a/recipes/bioconductor-breastcancerunt/post-link.sh
+++ b/recipes/bioconductor-breastcancerunt/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "breastcancerunt-1.38.0"
+installBiocDataPackage.sh "breastcancerunt-1.40.0"
diff --git a/recipes/bioconductor-breastcancerupp/meta.yaml b/recipes/bioconductor-breastcancerupp/meta.yaml
index 20b68e52bd898..0bdf776792724 100644
--- a/recipes/bioconductor-breastcancerupp/meta.yaml
+++ b/recipes/bioconductor-breastcancerupp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "breastCancerUPP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 37f0587a0149e1abe5525dd7bbc76a7f
+  md5: c5c10989a8a2dbfd20c228522474fac1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-breastcancerupp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: survcomp, genefu, Biobase
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-breastcancerupp/post-link.sh b/recipes/bioconductor-breastcancerupp/post-link.sh
index b8e19ca711332..7abd029d8fdcd 100644
--- a/recipes/bioconductor-breastcancerupp/post-link.sh
+++ b/recipes/bioconductor-breastcancerupp/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "breastcancerupp-1.38.0"
+installBiocDataPackage.sh "breastcancerupp-1.40.0"
diff --git a/recipes/bioconductor-breastcancervdx/meta.yaml b/recipes/bioconductor-breastcancervdx/meta.yaml
index 0f60c65a37662..ed8c49c9a563f 100644
--- a/recipes/bioconductor-breastcancervdx/meta.yaml
+++ b/recipes/bioconductor-breastcancervdx/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "breastCancerVDX" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a20c1e1a3060af883ced8843600a1614
+  md5: 446ef46e0bdd1480e12de21ded7b58f0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-breastcancervdx", max_pin="x.x") }}'
   noarch: generic
 # Suggests: survcomp, genefu, Biobase
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-breastcancervdx/post-link.sh b/recipes/bioconductor-breastcancervdx/post-link.sh
index a5e24a547d943..1269d20e15959 100644
--- a/recipes/bioconductor-breastcancervdx/post-link.sh
+++ b/recipes/bioconductor-breastcancervdx/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "breastcancervdx-1.38.0"
+installBiocDataPackage.sh "breastcancervdx-1.40.0"
diff --git a/recipes/bioconductor-brendadb/meta.yaml b/recipes/bioconductor-brendadb/meta.yaml
index 459cb8316015e..b084097d11c03 100644
--- a/recipes/bioconductor-brendadb/meta.yaml
+++ b/recipes/bioconductor-brendadb/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "brendaDb" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 048a034a1b3a87cfbd31ada86ee4b282
+  md5: 35e521feef3f87b0122ac00ad0deae5b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-brendadb", max_pin="x.x") }}'
 # Suggests: testthat, BiocStyle, knitr, rmarkdown, devtools
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-crayon
     - r-dplyr
@@ -37,8 +38,8 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-crayon
     - r-dplyr
diff --git a/recipes/bioconductor-brgedata/meta.yaml b/recipes/bioconductor-brgedata/meta.yaml
index f353e69bb3c67..39687c989b37a 100644
--- a/recipes/bioconductor-brgedata/meta.yaml
+++ b/recipes/bioconductor-brgedata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "brgedata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 5b448f1cfae2bb44babb2b1720d12234
+  md5: b8d26c8dfa756e9eb556e4662e3b3302
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-brgedata", max_pin="x.x") }}'
   noarch: generic
-# Suggests: minfi, MultiAssayExperiment, knitr, rmarkdown, rexposome
+# Suggests: minfi, MultiAssayExperiment, knitr, rmarkdown, rexposome, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-brgedata/post-link.sh b/recipes/bioconductor-brgedata/post-link.sh
index 1e48f726f3a24..267b22a18da9f 100644
--- a/recipes/bioconductor-brgedata/post-link.sh
+++ b/recipes/bioconductor-brgedata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "brgedata-1.22.0"
+installBiocDataPackage.sh "brgedata-1.24.0"
diff --git a/recipes/bioconductor-brgenomics/meta.yaml b/recipes/bioconductor-brgenomics/meta.yaml
index 4bccede1a84b9..519fe73af34c1 100644
--- a/recipes/bioconductor-brgenomics/meta.yaml
+++ b/recipes/bioconductor-brgenomics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.13.0" %}
 {% set name = "BRGenomics" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 96099779d34a4ffd00637a2da0d2888d
+  md5: 33a9bc55e58468faa4cc337617be743a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-brgenomics", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, apeglm, remotes, ggplot2, reshape2, Biostrings
 requirements:
   host:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-bridgedbr/meta.yaml b/recipes/bioconductor-bridgedbr/meta.yaml
index 13e09730ca229..f48e3b4fbacd2 100644
--- a/recipes/bioconductor-bridgedbr/meta.yaml
+++ b/recipes/bioconductor-bridgedbr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.10.0" %}
+{% set version = "2.12.0" %}
 {% set name = "BridgeDbR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 64a3933b9e01f5e9f8f7ca740fbf2e1a
+  md5: 2c155c28cb8d117e2dc1b69873b91d84
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bridgedbr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat
 requirements:
diff --git a/recipes/bioconductor-bronchialil13/meta.yaml b/recipes/bioconductor-bronchialil13/meta.yaml
index 16910d2d8dcb5..4084cc6bf0bff 100644
--- a/recipes/bioconductor-bronchialil13/meta.yaml
+++ b/recipes/bioconductor-bronchialil13/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "bronchialIL13" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 71116894de06b0faf014ae3be0f54b36
+  md5: be303e29450fb15b03a10f6caaf30159
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bronchialil13", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bronchialil13/post-link.sh b/recipes/bioconductor-bronchialil13/post-link.sh
index 49cb149982f5b..6ec47d8303721 100644
--- a/recipes/bioconductor-bronchialil13/post-link.sh
+++ b/recipes/bioconductor-bronchialil13/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "bronchialil13-1.38.0"
+installBiocDataPackage.sh "bronchialil13-1.40.0"
diff --git a/recipes/bioconductor-browserviz/meta.yaml b/recipes/bioconductor-browserviz/meta.yaml
index e2aff600e6de8..a84be67b166ab 100644
--- a/recipes/bioconductor-browserviz/meta.yaml
+++ b/recipes/bioconductor-browserviz/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.22.0" %}
+{% set version = "2.24.0" %}
 {% set name = "BrowserViz" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1f26ddbc8b11670673e8aa1ba1d596da
+  md5: ae6366903bd754cbe0ca0d21168c6883
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-browserviz", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - 'r-httpuv >=1.5.0'
     - 'r-jsonlite >=1.5'
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - 'r-httpuv >=1.5.0'
     - 'r-jsonlite >=1.5'
diff --git a/recipes/bioconductor-bsgenome.alyrata.jgi.v1/meta.yaml b/recipes/bioconductor-bsgenome.alyrata.jgi.v1/meta.yaml
index dd0c23f97d22c..8b13956ebc368 100644
--- a/recipes/bioconductor-bsgenome.alyrata.jgi.v1/meta.yaml
+++ b/recipes/bioconductor-bsgenome.alyrata.jgi.v1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.1" %}
 {% set name = "BSgenome.Alyrata.JGI.v1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 64878499c633de66ccf4c5abc32c0aeb
 build:
-  number: 4
+  number: 5
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.alyrata.jgi.v1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.amellifera.beebase.assembly4/meta.yaml b/recipes/bioconductor-bsgenome.amellifera.beebase.assembly4/meta.yaml
index 10447b66c3c39..ab05d12803a09 100644
--- a/recipes/bioconductor-bsgenome.amellifera.beebase.assembly4/meta.yaml
+++ b/recipes/bioconductor-bsgenome.amellifera.beebase.assembly4/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Amellifera.BeeBase.assembly4" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 77495ee5eba48fe52902c9cc4f9ba7cc
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.amellifera.beebase.assembly4", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.amellifera.ncbi.amelhav3.1/meta.yaml b/recipes/bioconductor-bsgenome.amellifera.ncbi.amelhav3.1/meta.yaml
index 9ff51c4de3714..be19401c6fca5 100644
--- a/recipes/bioconductor-bsgenome.amellifera.ncbi.amelhav3.1/meta.yaml
+++ b/recipes/bioconductor-bsgenome.amellifera.ncbi.amelhav3.1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.5.0" %}
 {% set name = "BSgenome.Amellifera.NCBI.AmelHAv3.1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: b119087dfe54805c90cb6bf901e8237e
 build:
-  number: 4
+  number: 5
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.amellifera.ncbi.amelhav3.1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.amellifera.ucsc.apimel2.masked/meta.yaml b/recipes/bioconductor-bsgenome.amellifera.ucsc.apimel2.masked/meta.yaml
index 51095fb8ab0e1..5ad72a039a442 100644
--- a/recipes/bioconductor-bsgenome.amellifera.ucsc.apimel2.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.amellifera.ucsc.apimel2.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Amellifera.UCSC.apiMel2.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: e7a7ff8cfce8e239b22116855456f23d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.amellifera.ucsc.apimel2.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.amellifera.ucsc.apimel2 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.amellifera.ucsc.apimel2 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.amellifera.ucsc.apimel2/meta.yaml b/recipes/bioconductor-bsgenome.amellifera.ucsc.apimel2/meta.yaml
index 6c642df024a66..03cf1f3dc82a3 100644
--- a/recipes/bioconductor-bsgenome.amellifera.ucsc.apimel2/meta.yaml
+++ b/recipes/bioconductor-bsgenome.amellifera.ucsc.apimel2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Amellifera.UCSC.apiMel2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 436ddf54868906e7d1135369d41a2ffe
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.amellifera.ucsc.apimel2", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.aofficinalis.ncbi.v1/meta.yaml b/recipes/bioconductor-bsgenome.aofficinalis.ncbi.v1/meta.yaml
index 77d7c5b033f0f..cd38ff3980573 100644
--- a/recipes/bioconductor-bsgenome.aofficinalis.ncbi.v1/meta.yaml
+++ b/recipes/bioconductor-bsgenome.aofficinalis.ncbi.v1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.0" %}
 {% set name = "BSgenome.Aofficinalis.NCBI.V1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 3f8fd13e74eee63895a5ef528004b60b
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.aofficinalis.ncbi.v1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.athaliana.tair.04232008/meta.yaml b/recipes/bioconductor-bsgenome.athaliana.tair.04232008/meta.yaml
index ad247c14857a0..4fdd444fe0fb6 100644
--- a/recipes/bioconductor-bsgenome.athaliana.tair.04232008/meta.yaml
+++ b/recipes/bioconductor-bsgenome.athaliana.tair.04232008/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.1000" %}
 {% set name = "BSgenome.Athaliana.TAIR.04232008" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 6b8a31a228dbcf4468974f5ec1d98467
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.athaliana.tair.04232008", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.athaliana.tair.tair9/meta.yaml b/recipes/bioconductor-bsgenome.athaliana.tair.tair9/meta.yaml
index e03055053f540..5829649a04069 100644
--- a/recipes/bioconductor-bsgenome.athaliana.tair.tair9/meta.yaml
+++ b/recipes/bioconductor-bsgenome.athaliana.tair.tair9/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.1000" %}
 {% set name = "BSgenome.Athaliana.TAIR.TAIR9" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 8c6709a5f544616d59f4d39aac5787a7
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.athaliana.tair.tair9", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau3.masked/meta.yaml b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau3.masked/meta.yaml
index a893da700aa30..5e00c72c1eb23 100644
--- a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau3.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau3.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Btaurus.UCSC.bosTau3.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 50f7da5907cbe0d08183dc7161a8ca56
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.btaurus.ucsc.bostau3.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.btaurus.ucsc.bostau3 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.btaurus.ucsc.bostau3 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau3/meta.yaml b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau3/meta.yaml
index a7cfc076d2a11..cf3656257eb57 100644
--- a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau3/meta.yaml
+++ b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau3/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Btaurus.UCSC.bosTau3" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: fe6c4d5853f91c3db3e716ddbc773580
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.btaurus.ucsc.bostau3", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau4.masked/meta.yaml b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau4.masked/meta.yaml
index 8f79033795b1a..27d7dfefcbef2 100644
--- a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau4.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau4.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Btaurus.UCSC.bosTau4.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 7c5294349c7061adfb3948bc5659afeb
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.btaurus.ucsc.bostau4.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.btaurus.ucsc.bostau4 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.btaurus.ucsc.bostau4 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau4/meta.yaml b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau4/meta.yaml
index 1c30f83c63ff8..eab5a9891ec02 100644
--- a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau4/meta.yaml
+++ b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau4/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Btaurus.UCSC.bosTau4" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 162cd253c719e347df5748ebb407a191
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.btaurus.ucsc.bostau4", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau6.masked/meta.yaml b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau6.masked/meta.yaml
index f75c8d0eaa275..bbfbee0affde2 100644
--- a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau6.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau6.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Btaurus.UCSC.bosTau6.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: a176de6b1b91854d47e783b8249dbf58
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.btaurus.ucsc.bostau6.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.btaurus.ucsc.bostau6 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.btaurus.ucsc.bostau6 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau6/meta.yaml b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau6/meta.yaml
index b3832e58994bd..ce246f321d24a 100644
--- a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau6/meta.yaml
+++ b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau6/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Btaurus.UCSC.bosTau6" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: b22391e0678fc3743daa4b77ecc55f66
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.btaurus.ucsc.bostau6", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau8/meta.yaml b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau8/meta.yaml
index 1c7c2e7b1f8d1..682d89e7f4c24 100644
--- a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau8/meta.yaml
+++ b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau8/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.2" %}
 {% set name = "BSgenome.Btaurus.UCSC.bosTau8" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 61ababa7b2b5360fceeb06f0bf49b208
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.btaurus.ucsc.bostau8", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau9.masked/meta.yaml b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau9.masked/meta.yaml
index 4bda0bf0ac096..62f59fbac5296 100644
--- a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau9.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau9.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.4" %}
 {% set name = "BSgenome.Btaurus.UCSC.bosTau9.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: c96bd95c3b791d712aa5cb8c96f9c937
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.btaurus.ucsc.bostau9.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.btaurus.ucsc.bostau9 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.btaurus.ucsc.bostau9 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau9/meta.yaml b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau9/meta.yaml
index 87bc529b78d3e..3f586fcdbffff 100644
--- a/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau9/meta.yaml
+++ b/recipes/bioconductor-bsgenome.btaurus.ucsc.bostau9/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.2" %}
 {% set name = "BSgenome.Btaurus.UCSC.bosTau9" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 9b3343725d85c093999413d91218079d
 build:
-  number: 7
+  number: 8
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.btaurus.ucsc.bostau9", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.carietinum.ncbi.v1/meta.yaml b/recipes/bioconductor-bsgenome.carietinum.ncbi.v1/meta.yaml
index 5a326847bb631..648f18fbe0f64 100644
--- a/recipes/bioconductor-bsgenome.carietinum.ncbi.v1/meta.yaml
+++ b/recipes/bioconductor-bsgenome.carietinum.ncbi.v1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.0" %}
 {% set name = "BSgenome.Carietinum.NCBI.v1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: eef018ecce6d32852aa18ac39cf377c6
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.carietinum.ncbi.v1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.celegans.ucsc.ce10/meta.yaml b/recipes/bioconductor-bsgenome.celegans.ucsc.ce10/meta.yaml
index 997b63d67e600..7f4da58f4e64f 100644
--- a/recipes/bioconductor-bsgenome.celegans.ucsc.ce10/meta.yaml
+++ b/recipes/bioconductor-bsgenome.celegans.ucsc.ce10/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Celegans.UCSC.ce10" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 98a8ca836d6db23e46674552669d7942
 build:
-  number: 16
+  number: 17
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.celegans.ucsc.ce10", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.celegans.ucsc.ce11/meta.yaml b/recipes/bioconductor-bsgenome.celegans.ucsc.ce11/meta.yaml
index 4edbab45dbd80..c2b220fe98a18 100644
--- a/recipes/bioconductor-bsgenome.celegans.ucsc.ce11/meta.yaml
+++ b/recipes/bioconductor-bsgenome.celegans.ucsc.ce11/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.2" %}
 {% set name = "BSgenome.Celegans.UCSC.ce11" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: b80e24149a0c6ed323d0c9a6d112ef52
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.celegans.ucsc.ce11", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.celegans.ucsc.ce2/meta.yaml b/recipes/bioconductor-bsgenome.celegans.ucsc.ce2/meta.yaml
index d41e5c535f971..32235e1365fe1 100644
--- a/recipes/bioconductor-bsgenome.celegans.ucsc.ce2/meta.yaml
+++ b/recipes/bioconductor-bsgenome.celegans.ucsc.ce2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Celegans.UCSC.ce2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: b2bf7eec2b07685cf9dcdf42840db208
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.celegans.ucsc.ce2", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.celegans.ucsc.ce6/meta.yaml b/recipes/bioconductor-bsgenome.celegans.ucsc.ce6/meta.yaml
index 77e16d3a2e788..e42da8e5488ee 100644
--- a/recipes/bioconductor-bsgenome.celegans.ucsc.ce6/meta.yaml
+++ b/recipes/bioconductor-bsgenome.celegans.ucsc.ce6/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Celegans.UCSC.ce6" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: cb86ff861d8f660c2abd8fc1907d84a6
 build:
-  number: 16
+  number: 17
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.celegans.ucsc.ce6", max_pin="x.x") }}'
   noarch: generic
 # Suggests: TxDb.Celegans.UCSC.ce6.ensGene
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked/meta.yaml b/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked/meta.yaml
index 2392f4d5cf402..069fc1c59c867 100644
--- a/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Cfamiliaris.UCSC.canFam2.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 6f921533bb83f83f43b8d227b00a48cb
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.cfamiliaris.ucsc.canfam2 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.cfamiliaris.ucsc.canfam2 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2/meta.yaml b/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2/meta.yaml
index 4ade310b5153a..982e9034314f8 100644
--- a/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2/meta.yaml
+++ b/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Cfamiliaris.UCSC.canFam2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: b98f5289ed5d362cd815db9352598634
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.cfamiliaris.ucsc.canfam2", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3.masked/meta.yaml b/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3.masked/meta.yaml
index 0492d4146ac81..0261f9eff5a17 100644
--- a/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Cfamiliaris.UCSC.canFam3.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 8e2246f51fc967dc2ed748cf967a7649
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.cfamiliaris.ucsc.canfam3.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.cfamiliaris.ucsc.canfam3 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.cfamiliaris.ucsc.canfam3 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3/meta.yaml b/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3/meta.yaml
index b8e2a85ce5776..89560db448749 100644
--- a/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3/meta.yaml
+++ b/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Cfamiliaris.UCSC.canFam3" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: efcdc531042be86f99a734cd69c0688c
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.cfamiliaris.ucsc.canfam3", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.cjacchus.ucsc.caljac3/meta.yaml b/recipes/bioconductor-bsgenome.cjacchus.ucsc.caljac3/meta.yaml
index 29b734795a981..10417581a99fc 100644
--- a/recipes/bioconductor-bsgenome.cjacchus.ucsc.caljac3/meta.yaml
+++ b/recipes/bioconductor-bsgenome.cjacchus.ucsc.caljac3/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.2" %}
 {% set name = "BSgenome.Cjacchus.UCSC.calJac3" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 41f927aa0d6ffbdaa6ad93c9135409e6
 build:
-  number: 10
+  number: 11
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.cjacchus.ucsc.caljac3", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.cjacchus.ucsc.caljac4/meta.yaml b/recipes/bioconductor-bsgenome.cjacchus.ucsc.caljac4/meta.yaml
index 899af20c80879..516f9eb1efe23 100644
--- a/recipes/bioconductor-bsgenome.cjacchus.ucsc.caljac4/meta.yaml
+++ b/recipes/bioconductor-bsgenome.cjacchus.ucsc.caljac4/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.5.0" %}
 {% set name = "BSgenome.Cjacchus.UCSC.calJac4" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: b11d16ac2cfa81e04af74e2049e52670
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.cjacchus.ucsc.caljac4", max_pin="x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - bioconductor-data-packages >=20231202
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.cneoformansvargrubiikn99.ncbi.asm221672v1/meta.yaml b/recipes/bioconductor-bsgenome.cneoformansvargrubiikn99.ncbi.asm221672v1/meta.yaml
index a506ea2b1c87e..462035d069539 100644
--- a/recipes/bioconductor-bsgenome.cneoformansvargrubiikn99.ncbi.asm221672v1/meta.yaml
+++ b/recipes/bioconductor-bsgenome.cneoformansvargrubiikn99.ncbi.asm221672v1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.0" %}
 {% set name = "BSgenome.CneoformansVarGrubiiKN99.NCBI.ASM221672v1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: ea536a15bd932af794f672d9b204c141
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.cneoformansvargrubiikn99.ncbi.asm221672v1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.creinhardtii.jgi.v5.6/meta.yaml b/recipes/bioconductor-bsgenome.creinhardtii.jgi.v5.6/meta.yaml
index 55e8df05bb417..c415b873854e9 100644
--- a/recipes/bioconductor-bsgenome.creinhardtii.jgi.v5.6/meta.yaml
+++ b/recipes/bioconductor-bsgenome.creinhardtii.jgi.v5.6/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.5.0" %}
 {% set name = "BSgenome.Creinhardtii.JGI.v5.6" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 2bd1be53d19249ac14ad7f39dc00af0e
 build:
-  number: 4
+  number: 5
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.creinhardtii.jgi.v5.6", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm2.masked/meta.yaml b/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm2.masked/meta.yaml
index 11825bf9d2d6e..62a0b17986a8d 100644
--- a/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm2.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm2.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Dmelanogaster.UCSC.dm2.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: ae7ca3053e97a0d6bd20bc2b9635ecce
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.dmelanogaster.ucsc.dm2.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.dmelanogaster.ucsc.dm2 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.dmelanogaster.ucsc.dm2 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm2/meta.yaml b/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm2/meta.yaml
index e3a3eef94ca81..7b1927e47450e 100644
--- a/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm2/meta.yaml
+++ b/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Dmelanogaster.UCSC.dm2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: ebc88df5595fc7aad588b8f3f7de4784
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.dmelanogaster.ucsc.dm2", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm3.masked/meta.yaml b/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm3.masked/meta.yaml
index 2f2cc231ae70f..6067d2d13f90e 100644
--- a/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm3.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm3.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Dmelanogaster.UCSC.dm3.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 592e7ec451d126b2d314ab6c75d86830
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.dmelanogaster.ucsc.dm3.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.dmelanogaster.ucsc.dm3 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.dmelanogaster.ucsc.dm3 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm3/meta.yaml b/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm3/meta.yaml
index f16df60d79dc6..c68d6516cefb1 100644
--- a/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm3/meta.yaml
+++ b/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm3/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Dmelanogaster.UCSC.dm3" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: b7ceebf7bfee766596f602f9e808d069
 build:
-  number: 16
+  number: 17
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.dmelanogaster.ucsc.dm3", max_pin="x.x") }}'
   noarch: generic
 # Suggests: TxDb.Dmelanogaster.UCSC.dm3.ensGene
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm6/meta.yaml b/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm6/meta.yaml
index d84b65dd7a732..feaea65b5861e 100644
--- a/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm6/meta.yaml
+++ b/recipes/bioconductor-bsgenome.dmelanogaster.ucsc.dm6/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.1" %}
 {% set name = "BSgenome.Dmelanogaster.UCSC.dm6" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: f9d6e406b7893a17c08edd4521c2802f
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.dmelanogaster.ucsc.dm6", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer10/meta.yaml b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer10/meta.yaml
index 92aca3bfbc9a8..87a3b044b538d 100644
--- a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer10/meta.yaml
+++ b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer10/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.2" %}
 {% set name = "BSgenome.Drerio.UCSC.danRer10" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: b8dbcc8a338a021ed35656b27b3dd4c0
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.drerio.ucsc.danrer10", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer11/meta.yaml b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer11/meta.yaml
index c45c38af3a531..95822ca277bba 100644
--- a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer11/meta.yaml
+++ b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer11/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.2" %}
 {% set name = "BSgenome.Drerio.UCSC.danRer11" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: cd586da56ca88ccebb85804f992ba204
 build:
-  number: 7
+  number: 8
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.drerio.ucsc.danrer11", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer5.masked/meta.yaml b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer5.masked/meta.yaml
index 68aa11c6f335a..64e298e1c21eb 100644
--- a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer5.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer5.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Drerio.UCSC.danRer5.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 8f0623bcbe1743754a56c55599b535f3
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.drerio.ucsc.danrer5.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.drerio.ucsc.danrer5 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.drerio.ucsc.danrer5 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer5/meta.yaml b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer5/meta.yaml
index 43690e11e74d6..bf6871a4d5a7d 100644
--- a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer5/meta.yaml
+++ b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer5/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Drerio.UCSC.danRer5" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: b1fee4bcc0d9cebb2bbdec5cb851f00d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.drerio.ucsc.danrer5", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer6.masked/meta.yaml b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer6.masked/meta.yaml
index fc11125683fda..6b526c573e5c6 100644
--- a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer6.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer6.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Drerio.UCSC.danRer6.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 71c9b05c27b8d2e05735e6494a8f17ba
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.drerio.ucsc.danrer6.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.drerio.ucsc.danrer6 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.drerio.ucsc.danrer6 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer6/meta.yaml b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer6/meta.yaml
index f0a07f6245687..478b3e1bddeff 100644
--- a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer6/meta.yaml
+++ b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer6/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Drerio.UCSC.danRer6" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 537d37d29d97ae0c31d77decc67b25b0
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.drerio.ucsc.danrer6", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer7.masked/meta.yaml b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer7.masked/meta.yaml
index fe467e74c1a8a..019514752ee1c 100644
--- a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer7.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer7.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Drerio.UCSC.danRer7.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 5d68af24477d006ed22e7342ff97ac16
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.drerio.ucsc.danrer7.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.drerio.ucsc.danrer7 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.drerio.ucsc.danrer7 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer7/meta.yaml b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer7/meta.yaml
index 05ea9322b3723..6c1a8c0e62b9d 100644
--- a/recipes/bioconductor-bsgenome.drerio.ucsc.danrer7/meta.yaml
+++ b/recipes/bioconductor-bsgenome.drerio.ucsc.danrer7/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Drerio.UCSC.danRer7" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 766b407a46f20d69a143eab0809eb10a
 build:
-  number: 15
+  number: 16
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.drerio.ucsc.danrer7", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.dvirilis.ensembl.dvircaf1/meta.yaml b/recipes/bioconductor-bsgenome.dvirilis.ensembl.dvircaf1/meta.yaml
index bfae8430f5959..0ce3c6e24705b 100644
--- a/recipes/bioconductor-bsgenome.dvirilis.ensembl.dvircaf1/meta.yaml
+++ b/recipes/bioconductor-bsgenome.dvirilis.ensembl.dvircaf1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.3" %}
 {% set name = "BSgenome.Dvirilis.Ensembl.dvircaf1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 6a6a6dc7b2d68a741c85525045a67890
 build:
-  number: 7
+  number: 8
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.dvirilis.ensembl.dvircaf1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.ecoli.ncbi.20080805/meta.yaml b/recipes/bioconductor-bsgenome.ecoli.ncbi.20080805/meta.yaml
index b99315e8e48ff..2f3ba681a1364 100644
--- a/recipes/bioconductor-bsgenome.ecoli.ncbi.20080805/meta.yaml
+++ b/recipes/bioconductor-bsgenome.ecoli.ncbi.20080805/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.1000" %}
 {% set name = "BSgenome.Ecoli.NCBI.20080805" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: c653e9cbee3faeb6fd5759b7575f234d
 build:
-  number: 16
+  number: 17
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.ecoli.ncbi.20080805", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1.masked/meta.yaml b/recipes/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1.masked/meta.yaml
index 4e8f686c998da..3a5920d510aaa 100644
--- a/recipes/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Gaculeatus.UCSC.gasAcu1.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 9d9b9e70f4f4624ee4a2b09a59d44510
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.gaculeatus.ucsc.gasacu1.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.gaculeatus.ucsc.gasacu1 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.gaculeatus.ucsc.gasacu1 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1/meta.yaml b/recipes/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1/meta.yaml
index 64feabca6f667..6a6732255be3d 100644
--- a/recipes/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1/meta.yaml
+++ b/recipes/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Gaculeatus.UCSC.gasAcu1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 412aa0570d9c556861b7bb9a5bbc2007
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.gaculeatus.ucsc.gasacu1", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal3.masked/meta.yaml b/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal3.masked/meta.yaml
index 58495ba4cfa9f..cf7403c1a2f0a 100644
--- a/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal3.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal3.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Ggallus.UCSC.galGal3.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: b3224e3a2b15de379c068e61cedfefa6
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.ggallus.ucsc.galgal3.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.ggallus.ucsc.galgal3 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.ggallus.ucsc.galgal3 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal3/meta.yaml b/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal3/meta.yaml
index 7d8a3cbcda3e5..e8b20a1070d3b 100644
--- a/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal3/meta.yaml
+++ b/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal3/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Ggallus.UCSC.galGal3" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: a463e5ccfc8c6d2c62a6ade0da65dbc4
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.ggallus.ucsc.galgal3", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal4.masked/meta.yaml b/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal4.masked/meta.yaml
index 32c4ca424d92b..4b54412a74eac 100644
--- a/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal4.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal4.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Ggallus.UCSC.galGal4.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 0166121ebd8d0b6a4d24d67e175cfe81
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.ggallus.ucsc.galgal4.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.ggallus.ucsc.galgal4 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.ggallus.ucsc.galgal4 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal4/meta.yaml b/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal4/meta.yaml
index ad3c3e3edc772..d54b800d51b31 100644
--- a/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal4/meta.yaml
+++ b/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal4/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Ggallus.UCSC.galGal4" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: c2cb4bfc39db93c060e78d8d12542c11
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.ggallus.ucsc.galgal4", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal5/meta.yaml b/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal5/meta.yaml
index 6274a0dcded2f..18a560405740b 100644
--- a/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal5/meta.yaml
+++ b/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal5/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.2" %}
 {% set name = "BSgenome.Ggallus.UCSC.galGal5" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 93b42354404edd848b21ea6781ca135c
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.ggallus.ucsc.galgal5", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal6/meta.yaml b/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal6/meta.yaml
index c5cf92c3d35ad..a44fab45df53d 100644
--- a/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal6/meta.yaml
+++ b/recipes/bioconductor-bsgenome.ggallus.ucsc.galgal6/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.2" %}
 {% set name = "BSgenome.Ggallus.UCSC.galGal6" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 25ef08a5430fb337dbf752ca3378ea3e
 build:
-  number: 7
+  number: 8
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.ggallus.ucsc.galgal6", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.gmax.ncbi.gmv40/meta.yaml b/recipes/bioconductor-bsgenome.gmax.ncbi.gmv40/meta.yaml
index f607776b31e4a..fe9c07be232c6 100644
--- a/recipes/bioconductor-bsgenome.gmax.ncbi.gmv40/meta.yaml
+++ b/recipes/bioconductor-bsgenome.gmax.ncbi.gmv40/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "4.0" %}
 {% set name = "BSgenome.Gmax.NCBI.Gmv40" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 421c045b993b2cfbc2b08c8103835c56
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.gmax.ncbi.gmv40", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.hsapiens.1000genomes.hs37d5/meta.yaml b/recipes/bioconductor-bsgenome.hsapiens.1000genomes.hs37d5/meta.yaml
index 4d458f7e30969..7fb6b93796e7d 100644
--- a/recipes/bioconductor-bsgenome.hsapiens.1000genomes.hs37d5/meta.yaml
+++ b/recipes/bioconductor-bsgenome.hsapiens.1000genomes.hs37d5/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.1" %}
 {% set name = "BSgenome.Hsapiens.1000genomes.hs37d5" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 164e1692d38fefa499c2c8ac5fc22793
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.hsapiens.1000genomes.hs37d5", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.hsapiens.ncbi.grch38/meta.yaml b/recipes/bioconductor-bsgenome.hsapiens.ncbi.grch38/meta.yaml
index 506c403b47d19..04da6b9994ab5 100644
--- a/recipes/bioconductor-bsgenome.hsapiens.ncbi.grch38/meta.yaml
+++ b/recipes/bioconductor-bsgenome.hsapiens.ncbi.grch38/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.1000" %}
 {% set name = "BSgenome.Hsapiens.NCBI.GRCh38" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 733d324b34d34d7da8c4bf38459f4fae
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.hsapiens.ncbi.grch38", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.hsapiens.ncbi.t2t.chm13v2.0/meta.yaml b/recipes/bioconductor-bsgenome.hsapiens.ncbi.t2t.chm13v2.0/meta.yaml
index 802f28ed1c51f..4f0ef091db55a 100644
--- a/recipes/bioconductor-bsgenome.hsapiens.ncbi.t2t.chm13v2.0/meta.yaml
+++ b/recipes/bioconductor-bsgenome.hsapiens.ncbi.t2t.chm13v2.0/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.5.0" %}
 {% set name = "BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 22a99174e1e17718e0b4f8b66f32fd9b
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.hsapiens.ncbi.t2t.chm13v2.0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg17.masked/meta.yaml b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg17.masked/meta.yaml
index fdaff26d7f794..7fb6eb6c52a75 100644
--- a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg17.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg17.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Hsapiens.UCSC.hg17.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: ff6ee5196f234c5a2a3bcdd052c3c08e
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.hsapiens.ucsc.hg17.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg17 >=1.3.0,<1.4.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg17 >=1.3.0,<1.4.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg17/meta.yaml b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg17/meta.yaml
index 4a71b4fbb264b..eb46af4af2e48 100644
--- a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg17/meta.yaml
+++ b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg17/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.1000" %}
 {% set name = "BSgenome.Hsapiens.UCSC.hg17" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: cbea3029c3d3125a88e6c061c3d3abde
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.hsapiens.ucsc.hg17", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg18.masked/meta.yaml b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg18.masked/meta.yaml
index 05ee40409117e..e950d5f76a8de 100644
--- a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg18.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg18.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Hsapiens.UCSC.hg18.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: e6a31e3cba34ce5e0eb6f76d2c19870c
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.hsapiens.ucsc.hg18.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg18 >=1.3.0,<1.4.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg18 >=1.3.0,<1.4.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg18/meta.yaml b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg18/meta.yaml
index a0c785f26697d..33e4cdff26eae 100644
--- a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg18/meta.yaml
+++ b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg18/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.1000" %}
 {% set name = "BSgenome.Hsapiens.UCSC.hg18" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 51bb2e1ed4009860bb21aaac32fffd9c
 build:
-  number: 14
+  number: 15
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.hsapiens.ucsc.hg18", max_pin="x.x") }}'
   noarch: generic
 # Suggests: TxDb.Hsapiens.UCSC.hg18.knownGene
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg19.masked/meta.yaml b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg19.masked/meta.yaml
index d4720898a70b4..5664f8236fb7e 100644
--- a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg19.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg19.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.993" %}
 {% set name = "BSgenome.Hsapiens.UCSC.hg19.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 4424e1bda9cc005d75f5f05ba4a50c77
 build:
-  number: 7
+  number: 8
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.hsapiens.ucsc.hg19.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg19/meta.yaml b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg19/meta.yaml
index 59cee391fb862..4280e60fd61df 100644
--- a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg19/meta.yaml
+++ b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg19/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.3" %}
 {% set name = "BSgenome.Hsapiens.UCSC.hg19" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: bb3f864ab32450d895816b45f6105f4f
 build:
-  number: 7
+  number: 8
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.hsapiens.ucsc.hg19", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major/meta.yaml b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major/meta.yaml
index 972385b4cccfb..2c99c40050795 100644
--- a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major/meta.yaml
+++ b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.0.9999" %}
 {% set name = "BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: c59f66e52d4982942bea2254223d58df
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Hsapiens.UCSC.hg38, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor, testthat
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor/meta.yaml b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor/meta.yaml
index 6e69afb63c9df..9c2021c5d0a73 100644
--- a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor/meta.yaml
+++ b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.0.9999" %}
 {% set name = "BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 2cc3a612a2064624735d6a92910be7f3
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Hsapiens.UCSC.hg38, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major, testthat
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38.masked/meta.yaml b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38.masked/meta.yaml
index 0fe10479f56ac..5a69152654b1b 100644
--- a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.5" %}
 {% set name = "BSgenome.Hsapiens.UCSC.hg38.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,24 +13,25 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 7570dd1b4f013b3c6acecd68602180b4
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.hsapiens.ucsc.hg38.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg38 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg38 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38/meta.yaml b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38/meta.yaml
index ca742fc10b820..caafd0d4f2854 100644
--- a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38/meta.yaml
+++ b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.5" %}
 {% set name = "BSgenome.Hsapiens.UCSC.hg38" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: b2e670c27944eed77fbe9a9b55be40d2
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.hsapiens.ucsc.hg38", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hs1/meta.yaml b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hs1/meta.yaml
index 71aeb4c9ab68c..6e76b23734749 100644
--- a/recipes/bioconductor-bsgenome.hsapiens.ucsc.hs1/meta.yaml
+++ b/recipes/bioconductor-bsgenome.hsapiens.ucsc.hs1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.4" %}
 {% set name = "BSgenome.Hsapiens.UCSC.hs1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 5812c5670f51a5c58a9da9e042e7e440
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.hsapiens.ucsc.hs1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.mdomestica.ucsc.mondom5/meta.yaml b/recipes/bioconductor-bsgenome.mdomestica.ucsc.mondom5/meta.yaml
index 97a0ef2a902cf..c4ab4bc879512 100644
--- a/recipes/bioconductor-bsgenome.mdomestica.ucsc.mondom5/meta.yaml
+++ b/recipes/bioconductor-bsgenome.mdomestica.ucsc.mondom5/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.2" %}
 {% set name = "BSgenome.Mdomestica.UCSC.monDom5" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: ff940f7446a275962f69a6f4cb84724c
 build:
-  number: 10
+  number: 11
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.mdomestica.ucsc.mondom5", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.mfascicularis.ncbi.5.0/meta.yaml b/recipes/bioconductor-bsgenome.mfascicularis.ncbi.5.0/meta.yaml
index 0784f336cd2a6..c888f310c4025 100644
--- a/recipes/bioconductor-bsgenome.mfascicularis.ncbi.5.0/meta.yaml
+++ b/recipes/bioconductor-bsgenome.mfascicularis.ncbi.5.0/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.2" %}
 {% set name = "BSgenome.Mfascicularis.NCBI.5.0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: dba6ade39dc6b4f6d06f488141b5550b
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.mfascicularis.ncbi.5.0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.mfascicularis.ncbi.6.0/meta.yaml b/recipes/bioconductor-bsgenome.mfascicularis.ncbi.6.0/meta.yaml
index d1c7ea45dcfd8..d6051b0d89c9a 100644
--- a/recipes/bioconductor-bsgenome.mfascicularis.ncbi.6.0/meta.yaml
+++ b/recipes/bioconductor-bsgenome.mfascicularis.ncbi.6.0/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.5.0" %}
 {% set name = "BSgenome.Mfascicularis.NCBI.6.0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 67272a96950f485d3c0770265f59c85c
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.mfascicularis.ncbi.6.0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.mfuro.ucsc.musfur1/meta.yaml b/recipes/bioconductor-bsgenome.mfuro.ucsc.musfur1/meta.yaml
index 9c9837bf6ca14..561159c626803 100644
--- a/recipes/bioconductor-bsgenome.mfuro.ucsc.musfur1/meta.yaml
+++ b/recipes/bioconductor-bsgenome.mfuro.ucsc.musfur1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.1" %}
 {% set name = "BSgenome.Mfuro.UCSC.musFur1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: c33e71746ce551bcbcd22be1979aee63
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.mfuro.ucsc.musfur1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac10/meta.yaml b/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac10/meta.yaml
index 62544190199ee..075e65553bbe0 100644
--- a/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac10/meta.yaml
+++ b/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac10/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.2" %}
 {% set name = "BSgenome.Mmulatta.UCSC.rheMac10" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 2f2afe40d5dcf8d8620aa5e12e311fbc
 build:
-  number: 7
+  number: 8
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.mmulatta.ucsc.rhemac10", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac2.masked/meta.yaml b/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac2.masked/meta.yaml
index 80ef70b97663a..0f176b99d2e61 100644
--- a/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac2.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac2.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Mmulatta.UCSC.rheMac2.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 7602d86b68df7e4c8d336fede4090a62
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.mmulatta.ucsc.rhemac2.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.mmulatta.ucsc.rhemac2 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.mmulatta.ucsc.rhemac2 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac2/meta.yaml b/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac2/meta.yaml
index 3a9195cd66f71..775d3ae08031f 100644
--- a/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac2/meta.yaml
+++ b/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Mmulatta.UCSC.rheMac2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 90c43e127e76dfd7cea90de9e1af9a50
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.mmulatta.ucsc.rhemac2", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac3.masked/meta.yaml b/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac3.masked/meta.yaml
index 18733254bbef5..e99cfc364553a 100644
--- a/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac3.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac3.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Mmulatta.UCSC.rheMac3.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 94f8714865655d3144e14f6fc5c24e76
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.mmulatta.ucsc.rhemac3.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.mmulatta.ucsc.rhemac3 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.mmulatta.ucsc.rhemac3 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac3/meta.yaml b/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac3/meta.yaml
index 2216fcb5a526c..b7f2e7e8cd0b3 100644
--- a/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac3/meta.yaml
+++ b/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac3/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Mmulatta.UCSC.rheMac3" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: dfa1ecb9d0bb7a5d9fa628092fb1c354
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.mmulatta.ucsc.rhemac3", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac8/meta.yaml b/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac8/meta.yaml
index 601e857dbfb7e..1e79bebdc1783 100644
--- a/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac8/meta.yaml
+++ b/recipes/bioconductor-bsgenome.mmulatta.ucsc.rhemac8/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.2" %}
 {% set name = "BSgenome.Mmulatta.UCSC.rheMac8" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: e9ad1f70f652c62554e2c5af7638c015
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.mmulatta.ucsc.rhemac8", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm10.masked/meta.yaml b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm10.masked/meta.yaml
index d58e64bc4ed81..82ebb44b2a53d 100644
--- a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm10.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm10.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.3" %}
 {% set name = "BSgenome.Mmusculus.UCSC.mm10.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 40d51fb428a5fda8c05101a3dddb8957
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.mmusculus.ucsc.mm10.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.mmusculus.ucsc.mm10 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.mmusculus.ucsc.mm10 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm10/meta.yaml b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm10/meta.yaml
index f1efa6f1fac69..8d717d8f96f31 100644
--- a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm10/meta.yaml
+++ b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm10/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.3" %}
 {% set name = "BSgenome.Mmusculus.UCSC.mm10" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: ffddc2e035527ed1a1e201ac4cc0b1f3
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.mmusculus.ucsc.mm10", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm39/meta.yaml b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm39/meta.yaml
index 69b0ae1f316ad..935b7d6e381f3 100644
--- a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm39/meta.yaml
+++ b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm39/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.3" %}
 {% set name = "BSgenome.Mmusculus.UCSC.mm39" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: a130ef50dd55da9fd341e6c90b22637b
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.mmusculus.ucsc.mm39", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked/meta.yaml b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked/meta.yaml
index 7684f10eb95d2..7f6fd1ee3b55f 100644
--- a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Mmusculus.UCSC.mm8.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 5809f925e0fe7c4b73b78a90c9a36fdd
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.mmusculus.ucsc.mm8.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.mmusculus.ucsc.mm8 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.mmusculus.ucsc.mm8 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm8/meta.yaml b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm8/meta.yaml
index 6e6c613171204..1015d037ec13c 100644
--- a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm8/meta.yaml
+++ b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm8/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Mmusculus.UCSC.mm8" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: f6aa91cdce2607f30a34f6dd0d678aff
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.mmusculus.ucsc.mm8", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked/meta.yaml b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked/meta.yaml
index 488f175b658b3..a388770cefc1a 100644
--- a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Mmusculus.UCSC.mm9.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: a5dadab14e55cdfc39649ede7a8483d5
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.mmusculus.ucsc.mm9.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.mmusculus.ucsc.mm9 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.mmusculus.ucsc.mm9 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm9/meta.yaml b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm9/meta.yaml
index 48013ddb87342..c84701d12370e 100644
--- a/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm9/meta.yaml
+++ b/recipes/bioconductor-bsgenome.mmusculus.ucsc.mm9/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Mmusculus.UCSC.mm9" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 5a30ba2b4481a17e8e6979eb69eabf78
 build:
-  number: 16
+  number: 17
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.mmusculus.ucsc.mm9", max_pin="x.x") }}'
   noarch: generic
 # Suggests: TxDb.Mmusculus.UCSC.mm9.knownGene
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.osativa.msu.msu7/meta.yaml b/recipes/bioconductor-bsgenome.osativa.msu.msu7/meta.yaml
index ff0a3d3aa702d..163678ae1635a 100644
--- a/recipes/bioconductor-bsgenome.osativa.msu.msu7/meta.yaml
+++ b/recipes/bioconductor-bsgenome.osativa.msu.msu7/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.2" %}
 {% set name = "BSgenome.Osativa.MSU.MSU7" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 80648058756a2f74aa5a246d38ecf576
 build:
-  number: 4
+  number: 5
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.osativa.msu.msu7", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.ppaniscus.ucsc.panpan1/meta.yaml b/recipes/bioconductor-bsgenome.ppaniscus.ucsc.panpan1/meta.yaml
index b59be7d005417..85411a3df2b2e 100644
--- a/recipes/bioconductor-bsgenome.ppaniscus.ucsc.panpan1/meta.yaml
+++ b/recipes/bioconductor-bsgenome.ppaniscus.ucsc.panpan1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.3" %}
 {% set name = "BSgenome.Ppaniscus.UCSC.panPan1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 186adb59264d468d17c0f6374e2eb1f6
 build:
-  number: 6
+  number: 7
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.ppaniscus.ucsc.panpan1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.ppaniscus.ucsc.panpan2/meta.yaml b/recipes/bioconductor-bsgenome.ppaniscus.ucsc.panpan2/meta.yaml
index e79c92349f3a6..f6c6a0c21e800 100644
--- a/recipes/bioconductor-bsgenome.ppaniscus.ucsc.panpan2/meta.yaml
+++ b/recipes/bioconductor-bsgenome.ppaniscus.ucsc.panpan2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.3" %}
 {% set name = "BSgenome.Ppaniscus.UCSC.panPan2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 74973376a6377d6820d6cd7fb3655a19
 build:
-  number: 6
+  number: 7
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.ppaniscus.ucsc.panpan2", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro2.masked/meta.yaml b/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro2.masked/meta.yaml
index f1f2ecf2167d5..456bbdeda57f3 100644
--- a/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro2.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro2.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Ptroglodytes.UCSC.panTro2.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: e6d069be23712b483b4e4c71554594cf
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.ptroglodytes.ucsc.pantro2.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.ptroglodytes.ucsc.pantro2 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.ptroglodytes.ucsc.pantro2 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro2/meta.yaml b/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro2/meta.yaml
index a2cfdf785362c..13287c4def47d 100644
--- a/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro2/meta.yaml
+++ b/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Ptroglodytes.UCSC.panTro2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 780200c315779ac75fcf0bdeb9a2eb8c
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.ptroglodytes.ucsc.pantro2", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro3.masked/meta.yaml b/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro3.masked/meta.yaml
index 9cbb09f9db090..ccedb52acf0fe 100644
--- a/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro3.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro3.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Ptroglodytes.UCSC.panTro3.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 89e96b3796d3b8e8793146597506e3f5
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.ptroglodytes.ucsc.pantro3.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.ptroglodytes.ucsc.pantro3 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.ptroglodytes.ucsc.pantro3 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro3/meta.yaml b/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro3/meta.yaml
index c99aa78937b5e..4cced5a9b52a6 100644
--- a/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro3/meta.yaml
+++ b/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro3/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Ptroglodytes.UCSC.panTro3" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 4677c75befd60742f3fc2a54c7f60666
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.ptroglodytes.ucsc.pantro3", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro5/meta.yaml b/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro5/meta.yaml
index 3787d51f36c05..e2c5ae5f72aaa 100644
--- a/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro5/meta.yaml
+++ b/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro5/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.2" %}
 {% set name = "BSgenome.Ptroglodytes.UCSC.panTro5" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 5b88573dd9c3ef838699b65934f8abe3
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.ptroglodytes.ucsc.pantro5", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro6/meta.yaml b/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro6/meta.yaml
index 693fc7176d78a..12604327f1864 100644
--- a/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro6/meta.yaml
+++ b/recipes/bioconductor-bsgenome.ptroglodytes.ucsc.pantro6/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.2" %}
 {% set name = "BSgenome.Ptroglodytes.UCSC.panTro6" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 1df05d985374e9edc1dd7c3df5118338
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.ptroglodytes.ucsc.pantro6", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn4.masked/meta.yaml b/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn4.masked/meta.yaml
index f14ab66ec392e..c583c872ec589 100644
--- a/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn4.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn4.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Rnorvegicus.UCSC.rn4.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 7e2ea7df588b6b10515e07ea3868c568
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.rnorvegicus.ucsc.rn4.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.rnorvegicus.ucsc.rn4 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.rnorvegicus.ucsc.rn4 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn4/meta.yaml b/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn4/meta.yaml
index e86c0d8bc025e..1c86c50cd4dae 100644
--- a/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn4/meta.yaml
+++ b/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn4/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Rnorvegicus.UCSC.rn4" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 3afe6729237781445d99ec38228ee1a8
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.rnorvegicus.ucsc.rn4", max_pin="x.x") }}'
   noarch: generic
 # Suggests: TxDb.Rnorvegicus.UCSC.rn4.ensGene
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked/meta.yaml b/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked/meta.yaml
index a42230bd9c169..89dbbafe4e2e5 100644
--- a/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Rnorvegicus.UCSC.rn5.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 663233774b79012cb2cc08224ac275ed
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.rnorvegicus.ucsc.rn5 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.rnorvegicus.ucsc.rn5 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn5/meta.yaml b/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn5/meta.yaml
index ad6b2d180cde1..4297c1fcfc716 100644
--- a/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn5/meta.yaml
+++ b/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn5/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Rnorvegicus.UCSC.rn5" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 723b1f3ced395ef638b2d68053b05c86
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.rnorvegicus.ucsc.rn5", max_pin="x.x") }}'
   noarch: generic
 # Suggests: TxDb.Rnorvegicus.UCSC.rn5.refGene
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn6/meta.yaml b/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn6/meta.yaml
index 3916440396076..1ee39156f2de8 100644
--- a/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn6/meta.yaml
+++ b/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn6/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.1" %}
 {% set name = "BSgenome.Rnorvegicus.UCSC.rn6" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 60d3fb201e0b1475912aaf681927096d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.rnorvegicus.ucsc.rn6", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn7/meta.yaml b/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn7/meta.yaml
index 8bb4b62e4b64c..07102a354264c 100644
--- a/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn7/meta.yaml
+++ b/recipes/bioconductor-bsgenome.rnorvegicus.ucsc.rn7/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.3" %}
 {% set name = "BSgenome.Rnorvegicus.UCSC.rn7" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: c64f7dd9e30ff88ce02ecd3712e4c454
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.rnorvegicus.ucsc.rn7", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.scerevisiae.ucsc.saccer1/meta.yaml b/recipes/bioconductor-bsgenome.scerevisiae.ucsc.saccer1/meta.yaml
index a990ef8a02074..725432e3a6292 100644
--- a/recipes/bioconductor-bsgenome.scerevisiae.ucsc.saccer1/meta.yaml
+++ b/recipes/bioconductor-bsgenome.scerevisiae.ucsc.saccer1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Scerevisiae.UCSC.sacCer1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: ad4c29c16a9635088bf13872b4a02ed4
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.scerevisiae.ucsc.saccer1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.scerevisiae.ucsc.saccer2/meta.yaml b/recipes/bioconductor-bsgenome.scerevisiae.ucsc.saccer2/meta.yaml
index 804779df06c94..f65fa66ad4026 100644
--- a/recipes/bioconductor-bsgenome.scerevisiae.ucsc.saccer2/meta.yaml
+++ b/recipes/bioconductor-bsgenome.scerevisiae.ucsc.saccer2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Scerevisiae.UCSC.sacCer2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: f1025b4d0fa7891dc46301550163753e
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.scerevisiae.ucsc.saccer2", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.scerevisiae.ucsc.saccer3/meta.yaml b/recipes/bioconductor-bsgenome.scerevisiae.ucsc.saccer3/meta.yaml
index d3c22fceff1e7..b386b9c86ea88 100644
--- a/recipes/bioconductor-bsgenome.scerevisiae.ucsc.saccer3/meta.yaml
+++ b/recipes/bioconductor-bsgenome.scerevisiae.ucsc.saccer3/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Scerevisiae.UCSC.sacCer3" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 7f2d8bba69c3dcebf426d9b19a6bed30
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.scerevisiae.ucsc.saccer3", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.sscrofa.ucsc.susscr11/meta.yaml b/recipes/bioconductor-bsgenome.sscrofa.ucsc.susscr11/meta.yaml
index 56385b29b352b..e2ac5d79e3f68 100644
--- a/recipes/bioconductor-bsgenome.sscrofa.ucsc.susscr11/meta.yaml
+++ b/recipes/bioconductor-bsgenome.sscrofa.ucsc.susscr11/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.2" %}
 {% set name = "BSgenome.Sscrofa.UCSC.susScr11" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: db22832229e31e1a629d107df522dff9
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.sscrofa.ucsc.susscr11", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.sscrofa.ucsc.susscr3.masked/meta.yaml b/recipes/bioconductor-bsgenome.sscrofa.ucsc.susscr3.masked/meta.yaml
index a56dd58b2c65b..c116c67adf671 100644
--- a/recipes/bioconductor-bsgenome.sscrofa.ucsc.susscr3.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.sscrofa.ucsc.susscr3.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Sscrofa.UCSC.susScr3.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: fd240651d22d169fd1e27a2b66e40dd7
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.sscrofa.ucsc.susscr3.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.sscrofa.ucsc.susscr3 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.sscrofa.ucsc.susscr3 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.sscrofa.ucsc.susscr3/meta.yaml b/recipes/bioconductor-bsgenome.sscrofa.ucsc.susscr3/meta.yaml
index 4c832870ef0c0..2903b8432bb02 100644
--- a/recipes/bioconductor-bsgenome.sscrofa.ucsc.susscr3/meta.yaml
+++ b/recipes/bioconductor-bsgenome.sscrofa.ucsc.susscr3/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Sscrofa.UCSC.susScr3" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 0457ca52a81c9d7ceadad5830169e6cf
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.sscrofa.ucsc.susscr3", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.tgondii.toxodb.7.0/meta.yaml b/recipes/bioconductor-bsgenome.tgondii.toxodb.7.0/meta.yaml
index e4427a2dd78e1..c22953ef89cf7 100644
--- a/recipes/bioconductor-bsgenome.tgondii.toxodb.7.0/meta.yaml
+++ b/recipes/bioconductor-bsgenome.tgondii.toxodb.7.0/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.1" %}
 {% set name = "BSgenome.Tgondii.ToxoDB.7.0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: f67644d1a897fe2ff4139832d4ceaf80
 build:
-  number: 4
+  number: 5
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.tgondii.toxodb.7.0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.tguttata.ucsc.taegut1.masked/meta.yaml b/recipes/bioconductor-bsgenome.tguttata.ucsc.taegut1.masked/meta.yaml
index 2b2a95e49809c..44e84dd6f5b29 100644
--- a/recipes/bioconductor-bsgenome.tguttata.ucsc.taegut1.masked/meta.yaml
+++ b/recipes/bioconductor-bsgenome.tguttata.ucsc.taegut1.masked/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.99" %}
 {% set name = "BSgenome.Tguttata.UCSC.taeGut1.masked" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 63684abb5b330bb54ff89fe78f2e6444
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.tguttata.ucsc.taegut1.masked", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.tguttata.ucsc.taegut1 >=1.4.0,<1.5.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.tguttata.ucsc.taegut1 >=1.4.0,<1.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.tguttata.ucsc.taegut1/meta.yaml b/recipes/bioconductor-bsgenome.tguttata.ucsc.taegut1/meta.yaml
index 3cc5e5fc365cb..086df25bd94c0 100644
--- a/recipes/bioconductor-bsgenome.tguttata.ucsc.taegut1/meta.yaml
+++ b/recipes/bioconductor-bsgenome.tguttata.ucsc.taegut1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.0" %}
 {% set name = "BSgenome.Tguttata.UCSC.taeGut1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 9753d9568d2a866a627673a518a1dd8a
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.tguttata.ucsc.taegut1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.tguttata.ucsc.taegut2/meta.yaml b/recipes/bioconductor-bsgenome.tguttata.ucsc.taegut2/meta.yaml
index 7ae6cc8a0698c..fbca5f56adb3d 100644
--- a/recipes/bioconductor-bsgenome.tguttata.ucsc.taegut2/meta.yaml
+++ b/recipes/bioconductor-bsgenome.tguttata.ucsc.taegut2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.2" %}
 {% set name = "BSgenome.Tguttata.UCSC.taeGut2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 1d39678fb060e643f7e9c4ec25e828c0
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.tguttata.ucsc.taegut2", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp12xv0/meta.yaml b/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp12xv0/meta.yaml
index f746388a13d54..ef55869bfb77c 100644
--- a/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp12xv0/meta.yaml
+++ b/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp12xv0/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.1" %}
 {% set name = "BSgenome.Vvinifera.URGI.IGGP12Xv0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 3f791de6d699325a97080cd98be86d89
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.vvinifera.urgi.iggp12xv0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp12xv2/meta.yaml b/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp12xv2/meta.yaml
index d59326e2d635e..32841939100f7 100644
--- a/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp12xv2/meta.yaml
+++ b/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp12xv2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.1" %}
 {% set name = "BSgenome.Vvinifera.URGI.IGGP12Xv2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 95472e574ab46327c19e241c381b26a2
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.vvinifera.urgi.iggp12xv2", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp8x/meta.yaml b/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp8x/meta.yaml
index 79a636e08497f..34e0332d217bc 100644
--- a/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp8x/meta.yaml
+++ b/recipes/bioconductor-bsgenome.vvinifera.urgi.iggp8x/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.1" %}
 {% set name = "BSgenome.Vvinifera.URGI.IGGP8X" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: fccaf60e5c9352b9c454f7a8ecac2a20
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome.vvinifera.urgi.iggp8x", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsgenome/meta.yaml b/recipes/bioconductor-bsgenome/meta.yaml
index 5a909a1c3dcc1..0958486077c61 100644
--- a/recipes/bioconductor-bsgenome/meta.yaml
+++ b/recipes/bioconductor-bsgenome/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.68.0" %}
+{% set version = "1.70.1" %}
 {% set name = "BSgenome" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,37 +11,40 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: deb582b34b2d5532bb811c223e8426a0
+  md5: a94697b953c4fc9bb0ba15daf35a884d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenome", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BiocManager, Biobase, BSgenome.Celegans.UCSC.ce2, BSgenome.Hsapiens.UCSC.hg38, BSgenome.Hsapiens.UCSC.hg38.masked, BSgenome.Mmusculus.UCSC.mm10, BSgenome.Rnorvegicus.UCSC.rn5, BSgenome.Scerevisiae.UCSC.sacCer1, BSgenome.Hsapiens.NCBI.GRCh38, TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Mmusculus.UCSC.mm10.knownGene, SNPlocs.Hsapiens.dbSNP144.GRCh38, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38, hgu95av2probe, RUnit
+# Suggests: BiocManager, Biobase, BSgenome.Celegans.UCSC.ce2, BSgenome.Hsapiens.UCSC.hg38, BSgenome.Hsapiens.UCSC.hg38.masked, BSgenome.Mmusculus.UCSC.mm10, BSgenome.Rnorvegicus.UCSC.rn5, BSgenome.Scerevisiae.UCSC.sacCer1, BSgenome.Hsapiens.NCBI.GRCh38, TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Mmusculus.UCSC.mm10.knownGene, SNPlocs.Hsapiens.dbSNP144.GRCh38, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38, hgu95av2probe, RUnit, BSgenomeForge
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocio >=1.12.0,<1.13.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-matrixstats
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocio >=1.12.0,<1.13.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-matrixstats
 test:
diff --git a/recipes/bioconductor-bsgenomeforge/meta.yaml b/recipes/bioconductor-bsgenomeforge/meta.yaml
index 7b4754b1911f5..0c189d94200e2 100644
--- a/recipes/bioconductor-bsgenomeforge/meta.yaml
+++ b/recipes/bioconductor-bsgenomeforge/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.1" %}
+{% set version = "1.2.0" %}
 {% set name = "BSgenomeForge" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 630aec996209048e39553239dd20e563
+  md5: ed03f4628533403765aae28991855bca
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsgenomeforge", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicRanges, GenomicFeatures, testthat, knitr, rmarkdown, BiocStyle, devtools
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-bsseq/meta.yaml b/recipes/bioconductor-bsseq/meta.yaml
index e0a4b601e8cd0..a707ba6ca86b9 100644
--- a/recipes/bioconductor-bsseq/meta.yaml
+++ b/recipes/bioconductor-bsseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "bsseq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 3fa1d3c20a5204d8d336c3261174ecfd
+  md5: 0fee416655d94a260bf4a613b4a6321e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsseq", max_pin="x.x") }}'
 # Suggests: testthat, bsseqData, BiocStyle, rmarkdown, knitr, Matrix, doParallel, rtracklayer, BSgenome.Hsapiens.UCSC.hg38, beachmat (>= 1.5.2), batchtools
 requirements:
   host:
-    - 'bioconductor-beachmat >=2.16.0,<2.17.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-data.table >=1.11.8'
     - r-gtools
@@ -47,22 +48,22 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-beachmat >=2.16.0,<2.17.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-data.table >=1.11.8'
     - r-gtools
diff --git a/recipes/bioconductor-bsseqdata/meta.yaml b/recipes/bioconductor-bsseqdata/meta.yaml
index e892d6dcf9b31..2c014a22b1551 100644
--- a/recipes/bioconductor-bsseqdata/meta.yaml
+++ b/recipes/bioconductor-bsseqdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.38.0" %}
+{% set version = "0.40.0" %}
 {% set name = "bsseqData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: aeca7a29ea03b49344cf7cc223389537
+  md5: 514171e8133c8d38e6b1ad31eff722a8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsseqdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsseq >=1.36.0,<1.37.0'
+    - 'bioconductor-bsseq >=1.38.0,<1.39.0'
     - r-base
   run:
-    - 'bioconductor-bsseq >=1.36.0,<1.37.0'
+    - 'bioconductor-bsseq >=1.38.0,<1.39.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsseqdata/post-link.sh b/recipes/bioconductor-bsseqdata/post-link.sh
index 3679601aa6199..6f79c30564302 100644
--- a/recipes/bioconductor-bsseqdata/post-link.sh
+++ b/recipes/bioconductor-bsseqdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "bsseqdata-0.38.0"
+installBiocDataPackage.sh "bsseqdata-0.40.0"
diff --git a/recipes/bioconductor-bsubtiliscdf/meta.yaml b/recipes/bioconductor-bsubtiliscdf/meta.yaml
index 706abfe6693c0..d9da46bade688 100644
--- a/recipes/bioconductor-bsubtiliscdf/meta.yaml
+++ b/recipes/bioconductor-bsubtiliscdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "bsubtiliscdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 7d7893d28c601206805819ae0e49b31b
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsubtiliscdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bsubtilisprobe/meta.yaml b/recipes/bioconductor-bsubtilisprobe/meta.yaml
index 6ff55a639a50b..7cfe3dece2b39 100644
--- a/recipes/bioconductor-bsubtilisprobe/meta.yaml
+++ b/recipes/bioconductor-bsubtilisprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "bsubtilisprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 83568fcea2122350b7ce982e79b7ec53
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bsubtilisprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bubbletree/meta.yaml b/recipes/bioconductor-bubbletree/meta.yaml
index 01bb298429bc2..23898ead413c9 100644
--- a/recipes/bioconductor-bubbletree/meta.yaml
+++ b/recipes/bioconductor-bubbletree/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.30.0" %}
+{% set version = "2.32.0" %}
 {% set name = "BubbleTree" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 03eea1f59b31aa704ae501d2f8fc5854
+  md5: 84649d9271ce193051e18a7bb56ff58e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bubbletree", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-biovizbase >=1.48.0,<1.49.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-biovizbase >=1.50.0,<1.51.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-dplyr
     - r-e1071
@@ -40,13 +41,13 @@ requirements:
     - r-rcolorbrewer
     - r-writexls
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-biovizbase >=1.48.0,<1.49.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-biovizbase >=1.50.0,<1.51.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-dplyr
     - r-e1071
diff --git a/recipes/bioconductor-bufferedmatrix/meta.yaml b/recipes/bioconductor-bufferedmatrix/meta.yaml
index 2e9069b65c3f1..dbb18ad6dfccf 100644
--- a/recipes/bioconductor-bufferedmatrix/meta.yaml
+++ b/recipes/bioconductor-bufferedmatrix/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.64.0" %}
+{% set version = "1.66.0" %}
 {% set name = "BufferedMatrix" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b33976ecec4bcd9ddabec3ef8747bc78
+  md5: a4ad95db528526463e6dfca80975815e
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bufferedmatrix", max_pin="x.x") }}'
 requirements:
   host:
     - r-base
diff --git a/recipes/bioconductor-bufferedmatrixmethods/meta.yaml b/recipes/bioconductor-bufferedmatrixmethods/meta.yaml
index 595e58c396867..55a8f987f77dc 100644
--- a/recipes/bioconductor-bufferedmatrixmethods/meta.yaml
+++ b/recipes/bioconductor-bufferedmatrixmethods/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.64.0" %}
+{% set version = "1.66.0" %}
 {% set name = "BufferedMatrixMethods" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c6dfc8b00fbfc5e05576eeef80a6bf9d
+  md5: 57eb9e8db5a9dc58db25b88bbe5d2436
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bufferedmatrixmethods", max_pin="x.x") }}'
 # Suggests: affyio, affy
 requirements:
   host:
-    - 'bioconductor-bufferedmatrix >=1.64.0,<1.65.0'
+    - 'bioconductor-bufferedmatrix >=1.66.0,<1.67.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-bufferedmatrix >=1.64.0,<1.65.0'
+    - 'bioconductor-bufferedmatrix >=1.66.0,<1.67.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-bugsigdbr/meta.yaml b/recipes/bioconductor-bugsigdbr/meta.yaml
index 45bcd9de2cece..345d5d5fb9b45 100644
--- a/recipes/bioconductor-bugsigdbr/meta.yaml
+++ b/recipes/bioconductor-bugsigdbr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.2" %}
+{% set version = "1.8.1" %}
 {% set name = "bugsigdbr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 5580a7ce1e29f6e6138a62185f2a9364
+  md5: 35aebe840ca55cd93f16af9d239ea806
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bugsigdbr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, ontologyIndex, rmarkdown, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
     - r-base
-    - r-vroom
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
     - r-base
-    - r-vroom
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-bumhmm/meta.yaml b/recipes/bioconductor-bumhmm/meta.yaml
index bfb19bbee28a7..853c6756464b6 100644
--- a/recipes/bioconductor-bumhmm/meta.yaml
+++ b/recipes/bioconductor-bumhmm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "BUMHMM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e43e3eb5d210769b8d9c5b585ecd2af9
+  md5: c70dbfec58330fd1fa6cd1aca5e16912
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bumhmm", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-devtools
     - r-gtools
     - r-stringi
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-devtools
     - r-gtools
diff --git a/recipes/bioconductor-bumphunter/meta.yaml b/recipes/bioconductor-bumphunter/meta.yaml
index def7d740c00be..44699549646a5 100644
--- a/recipes/bioconductor-bumphunter/meta.yaml
+++ b/recipes/bioconductor-bumphunter/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "bumphunter" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 0fba211d07df317c3d4722a85357a475
+  md5: fea93f84b54daabaaf1686d658aeedfc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bumphunter", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, RUnit, doParallel, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dorng
     - r-foreach
@@ -36,14 +37,14 @@ requirements:
     - r-locfit
     - r-matrixstats
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dorng
     - r-foreach
diff --git a/recipes/bioconductor-bumpymatrix/meta.yaml b/recipes/bioconductor-bumpymatrix/meta.yaml
index aabf599c5e7d0..3087aebf5c9a1 100644
--- a/recipes/bioconductor-bumpymatrix/meta.yaml
+++ b/recipes/bioconductor-bumpymatrix/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "BumpyMatrix" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1575e971c01dd864c690ca5b48627781
+  md5: 6069ae96659170c765102c2513e44b58
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bumpymatrix", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-matrix
   run:
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-matrix
 test:
diff --git a/recipes/bioconductor-bus/meta.yaml b/recipes/bioconductor-bus/meta.yaml
index 95f003cf037ac..ba7572a435302 100644
--- a/recipes/bioconductor-bus/meta.yaml
+++ b/recipes/bioconductor-bus/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.56.0" %}
+{% set version = "1.58.0" %}
 {% set name = "BUS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 10472148950ca1a1ccfecaadf43367d0
+  md5: 788ab26ecf05f0df93667a7c37f564ff
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-bus", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-minet >=3.58.0,<3.59.0'
+    - 'bioconductor-minet >=3.60.0,<3.61.0'
     - r-base
     - r-infotheo
     - libblas
     - liblapack
   run:
-    - 'bioconductor-minet >=3.58.0,<3.59.0'
+    - 'bioconductor-minet >=3.60.0,<3.61.0'
     - r-base
     - r-infotheo
   build:
@@ -37,11 +38,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-3
+  license: 'GPL-3.0-only'
   summary: 'Gene network reconstruction'
   description: 'This package can be used to compute associations among genes (gene-networks) or between genes and some external traits (i.e. clinical).'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:bus
     - doi:10.1038/nmeth.3252
diff --git a/recipes/bioconductor-buscorrect/meta.yaml b/recipes/bioconductor-buscorrect/meta.yaml
index d15129579ac74..6758c04e142f8 100644
--- a/recipes/bioconductor-buscorrect/meta.yaml
+++ b/recipes/bioconductor-buscorrect/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "BUScorrect" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: dcefe721755de842d0d1952acb19a459
+  md5: 6d24bece1ac7982a2a157e5cccc01b99
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-buscorrect", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-gplots
     - libblas
     - liblapack
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-gplots
   build:
@@ -37,8 +38,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'GPL (>= 2)'
+  license: 'GPL-3.0-or-later'
   summary: 'Batch Effects Correction with Unknown Subtypes'
   description: 'High-throughput experimental data are accumulating exponentially in public databases. However, mining valid scientific discoveries from these abundant resources is hampered by technical artifacts and inherent biological heterogeneity. The former are usually termed "batch effects," and the latter is often modelled by "subtypes." The R package BUScorrect fits a Bayesian hierarchical model, the Batch-effects-correction-with-Unknown-Subtypes model (BUS), to correct batch effects in the presence of unknown subtypes. BUS is capable of (a) correcting batch effects explicitly, (b) grouping samples that share similar characteristics into subtypes, (c) identifying features that distinguish subtypes, and (d) enjoying a linear-order computation complexity.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
diff --git a/recipes/bioconductor-busparse/meta.yaml b/recipes/bioconductor-busparse/meta.yaml
index 42b0d95564295..6946225b5c956 100644
--- a/recipes/bioconductor-busparse/meta.yaml
+++ b/recipes/bioconductor-busparse/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.1" %}
+{% set version = "1.16.0" %}
 {% set name = "BUSpaRse" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d08b55495020361901d1373d4df4339c
+  md5: 7d2decd570fd518ad9a06c10a5ecffb3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-busparse", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, testthat, BiocStyle, TENxBUSData, TxDb.Hsapiens.UCSC.hg38.knownGene, BSgenome.Hsapiens.UCSC.hg38, EnsDb.Hsapiens.v86
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-plyranges >=1.20.0,<1.21.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-bh
     - r-dplyr
@@ -50,19 +51,19 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-plyranges >=1.20.0,<1.21.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-bh
     - r-dplyr
diff --git a/recipes/bioconductor-busseq/meta.yaml b/recipes/bioconductor-busseq/meta.yaml
index 1bc0066302432..1efe83d6f0fd2 100644
--- a/recipes/bioconductor-busseq/meta.yaml
+++ b/recipes/bioconductor-busseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.1" %}
+{% set version = "1.8.0" %}
 {% set name = "BUSseq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3623f486d083ce7f0c38903eae323c93
+  md5: ba606db2bfb17a5958ba686639ecefbe
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-busseq", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-gplots
     - libblas
     - liblapack
   run:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-gplots
   build:
diff --git a/recipes/bioconductor-cadd.v1.6.hg19/meta.yaml b/recipes/bioconductor-cadd.v1.6.hg19/meta.yaml
new file mode 100644
index 0000000000000..446a23d0973bb
--- /dev/null
+++ b/recipes/bioconductor-cadd.v1.6.hg19/meta.yaml
@@ -0,0 +1,42 @@
+{% set version = "3.18.1" %}
+{% set name = "cadd.v1.6.hg19" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
+  md5: 10cc50d17dbca89406a2290f37d5203c
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cadd.v1.6.hg19", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: knitr, rmarkdown, BiocStyle
+requirements:
+  host:
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - r-base
+  run:
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - r-base
+    - curl
+    - 'bioconductor-data-packages >=20231203'
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'CADD v1.6 Pathogenicity Scores AnnotationHub Resource Metadata for hg19'
+  description: 'Store University of Washington CADD v1.6 hg19 pathogenicity scores AnnotationHub Resource Metadata. Provide provenance and citation information for University of Washington CADD v1.6 hg19 pathogenicity score AnnotationHub resources. Illustrate in a vignette how to access those resources.'
+
diff --git a/recipes/bioconductor-cadd.v1.6.hg19/post-link.sh b/recipes/bioconductor-cadd.v1.6.hg19/post-link.sh
new file mode 100644
index 0000000000000..1cccd56a142ff
--- /dev/null
+++ b/recipes/bioconductor-cadd.v1.6.hg19/post-link.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+installBiocDataPackage.sh "cadd.v1.6.hg19-3.18.1"
diff --git a/recipes/bioconductor-cadd.v1.6.hg19/pre-unlink.sh b/recipes/bioconductor-cadd.v1.6.hg19/pre-unlink.sh
new file mode 100644
index 0000000000000..010caf8ebc0f2
--- /dev/null
+++ b/recipes/bioconductor-cadd.v1.6.hg19/pre-unlink.sh
@@ -0,0 +1 @@
+R CMD REMOVE --library=$PREFIX/lib/R/library/ cadd.v1.6.hg19
diff --git a/recipes/bioconductor-cadd.v1.6.hg38/meta.yaml b/recipes/bioconductor-cadd.v1.6.hg38/meta.yaml
new file mode 100644
index 0000000000000..1136468b55f7b
--- /dev/null
+++ b/recipes/bioconductor-cadd.v1.6.hg38/meta.yaml
@@ -0,0 +1,42 @@
+{% set version = "3.18.1" %}
+{% set name = "cadd.v1.6.hg38" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
+  md5: 620a889ea8bc55f98811a80a3aec814d
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cadd.v1.6.hg38", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: knitr, rmarkdown, BiocStyle
+requirements:
+  host:
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - r-base
+  run:
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - r-base
+    - curl
+    - 'bioconductor-data-packages >=20231203'
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'CADD v1.6 Pathogenicity Scores AnnotationHub Resource Metadata for hg38'
+  description: 'Store University of Washington CADD v1.6 hg38 pathogenicity scores AnnotationHub Resource Metadata. Provide provenance and citation information for University of Washington CADD v1.6 hg38 pathogenicity score AnnotationHub resources. Illustrate in a vignette how to access those resources.'
+
diff --git a/recipes/bioconductor-cadd.v1.6.hg38/post-link.sh b/recipes/bioconductor-cadd.v1.6.hg38/post-link.sh
new file mode 100644
index 0000000000000..c954375b37933
--- /dev/null
+++ b/recipes/bioconductor-cadd.v1.6.hg38/post-link.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+installBiocDataPackage.sh "cadd.v1.6.hg38-3.18.1"
diff --git a/recipes/bioconductor-cadd.v1.6.hg38/pre-unlink.sh b/recipes/bioconductor-cadd.v1.6.hg38/pre-unlink.sh
new file mode 100644
index 0000000000000..3bd10bc74e89d
--- /dev/null
+++ b/recipes/bioconductor-cadd.v1.6.hg38/pre-unlink.sh
@@ -0,0 +1 @@
+R CMD REMOVE --library=$PREFIX/lib/R/library/ cadd.v1.6.hg38
diff --git a/recipes/bioconductor-cadra/build.sh b/recipes/bioconductor-cadra/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-cadra/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-cadra/meta.yaml b/recipes/bioconductor-cadra/meta.yaml
new file mode 100644
index 0000000000000..72f0b311f64e6
--- /dev/null
+++ b/recipes/bioconductor-cadra/meta.yaml
@@ -0,0 +1,63 @@
+{% set version = "1.0.1" %}
+{% set name = "CaDrA" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 9ac2bc6afe6632e5fbd00c687ca19bba
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cadra", max_pin="x.x") }}'
+# Suggests: BiocManager, BiocStyle, devtools, knitr, magick, pheatmap, rmarkdown, testthat (>= 3.1.6)
+requirements:
+  host:
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-doparallel
+    - r-ggplot2
+    - r-gplots
+    - r-gtable
+    - r-mass
+    - r-misc3d
+    - r-plyr
+    - r-ppcor
+    - r-r.cache
+    - r-reshape2
+    - libblas
+    - liblapack
+  run:
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-doparallel
+    - r-ggplot2
+    - r-gplots
+    - r-gtable
+    - r-mass
+    - r-misc3d
+    - r-plyr
+    - r-ppcor
+    - r-r.cache
+    - r-reshape2
+  build:
+    - {{ compiler('c') }}
+    - make
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'GPL-3 + file LICENSE'
+  summary: 'Candidate Driver Analysis'
+  description: 'Performs both stepwise and backward heuristic search for candidate (epi)genetic drivers based on a binary multi-omics dataset. CaDrA''s main objective is to identify features which, together, are significantly skewed or enriched pertaining to a given vector of continuous scores (e.g. sample-specific scores representing a phenotypic readout of interest, such as protein expression, pathway activity, etc.), based on the union occurence (i.e. logical OR) of the events.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-caen/meta.yaml b/recipes/bioconductor-caen/meta.yaml
index da3cb9b5852b4..9430206502ac5 100644
--- a/recipes/bioconductor-caen/meta.yaml
+++ b/recipes/bioconductor-caen/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "CAEN" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0bad38df2fe80cade3ef9db7c9241188
+  md5: 66decd595d2315a90c09b7d52df606c5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-caen", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr,rmarkdown,BiocManager,SummarizedExperiment,BiocStyle
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-poiclaclu
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-poiclaclu
 test:
diff --git a/recipes/bioconductor-cafe/meta.yaml b/recipes/bioconductor-cafe/meta.yaml
index 42660bfbef0ba..38e52b776a3fc 100644
--- a/recipes/bioconductor-cafe/meta.yaml
+++ b/recipes/bioconductor-cafe/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "CAFE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3327ab214fb57b43e0e88bd2249c3b17
+  md5: 1a64370f203f198ad86163715decbebb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cafe", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, BiocStyle
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biovizbase >=1.48.0,<1.49.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biovizbase >=1.50.0,<1.51.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-ggplot2
     - r-gridextra
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biovizbase >=1.48.0,<1.49.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biovizbase >=1.50.0,<1.51.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-ggplot2
     - r-gridextra
diff --git a/recipes/bioconductor-cagefightr/meta.yaml b/recipes/bioconductor-cagefightr/meta.yaml
index 36d6bebb1e13f..7c7717aa940e4 100644
--- a/recipes/bioconductor-cagefightr/meta.yaml
+++ b/recipes/bioconductor-cagefightr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "CAGEfightR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,49 +11,50 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2c46d615668fe693b427295c88416052
+  md5: 86c87a4bec49d7c37ef74a6a6081a685
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cagefightr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, org.Mm.eg.db, TxDb.Mmusculus.UCSC.mm9.knownGene
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicfiles >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicinteractions >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicfiles >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicinteractions >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'r-assertthat >=0.2.0'
     - r-base
     - 'r-matrix >=1.2-12'
     - 'r-pryr >=0.1.3'
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicfiles >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicinteractions >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicfiles >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicinteractions >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'r-assertthat >=0.2.0'
     - r-base
     - 'r-matrix >=1.2-12'
diff --git a/recipes/bioconductor-cageminer/meta.yaml b/recipes/bioconductor-cageminer/meta.yaml
index c31239d6fd788..f6b6d7035888b 100644
--- a/recipes/bioconductor-cageminer/meta.yaml
+++ b/recipes/bioconductor-cageminer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.1" %}
+{% set version = "1.8.0" %}
 {% set name = "cageminer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,32 +11,33 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d85bf5a81347a582b161160ccf001d83
+  md5: 02b96b12bfe145c4c9deefff49cd1015
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cageminer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 3.0.0), SummarizedExperiment, knitr, BiocStyle, rmarkdown, covr, sessioninfo
 requirements:
   host:
-    - 'bioconductor-bionero >=1.8.0,<1.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-bionero >=1.10.0,<1.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-ggplot2
     - r-ggtext
     - r-reshape2
     - r-rlang
   run:
-    - 'bioconductor-bionero >=1.8.0,<1.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-bionero >=1.10.0,<1.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-ggplot2
     - r-ggtext
diff --git a/recipes/bioconductor-cager/meta.yaml b/recipes/bioconductor-cager/meta.yaml
index 7f748a4694dab..760142e82ee20 100644
--- a/recipes/bioconductor-cager/meta.yaml
+++ b/recipes/bioconductor-cager/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.6.0" %}
+{% set version = "2.8.0" %}
 {% set name = "CAGEr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b4abf800289121fcb4795c1a30fd35cd
+  md5: 845c3a47631734b6fe7209f173e24100
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cager", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Drerio.UCSC.danRer7, DESeq2, FANTOM3and4CAGE, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-cagefightr >=1.20.0,<1.21.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-cagefightr >=1.22.0,<1.23.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-formula.tools
@@ -51,21 +52,21 @@ requirements:
     - r-vegan
     - r-vgam
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-cagefightr >=1.20.0,<1.21.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-cagefightr >=1.22.0,<1.23.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-formula.tools
diff --git a/recipes/bioconductor-calm/meta.yaml b/recipes/bioconductor-calm/meta.yaml
index 390e16252f8a9..d544112473d73 100644
--- a/recipes/bioconductor-calm/meta.yaml
+++ b/recipes/bioconductor-calm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "calm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d6b0e35a1cf15fe23f6ac7138863a58d
+  md5: 9a2b4c48021193636c88c997331ede2d
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-calm", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
diff --git a/recipes/bioconductor-camera/meta.yaml b/recipes/bioconductor-camera/meta.yaml
index 0d3eca1b9f159..420d36ddcad2f 100644
--- a/recipes/bioconductor-camera/meta.yaml
+++ b/recipes/bioconductor-camera/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.56.0" %}
+{% set version = "1.58.0" %}
 {% set name = "CAMERA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b627c870804005f6ef9c1f48ccf6eceb
+  md5: 1958cafb2c9dd92fa44a35cfc607f894
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-camera", max_pin="x.x") }}'
 # Suggests: faahKO, RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-base
     - r-hmisc
     - r-igraph
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-base
     - r-hmisc
     - r-igraph
@@ -45,11 +46,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'GPL (>= 2)'
+  license: 'GPL-3.0-or-later'
   summary: 'Collection of annotation related methods for mass spectrometry data'
   description: 'Annotation of peaklists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:camera
   parent_recipe:
diff --git a/recipes/bioconductor-cancer/meta.yaml b/recipes/bioconductor-cancer/meta.yaml
index 0163ea2219ef7..1498a00e3bb28 100644
--- a/recipes/bioconductor-cancer/meta.yaml
+++ b/recipes/bioconductor-cancer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "canceR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 942f2c8187c6686017489023ee793d0d
+  md5: 4311164fc68969a40252dc3761583f24
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cancer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 3.1), knitr, rmarkdown, BiocStyle
 # SystemRequirements: Tktable, BWidget
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genetclassifier >=1.40.0,<1.41.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-phenotest >=1.48.0,<1.49.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genetclassifier >=1.42.0,<1.43.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-phenotest >=1.50.0,<1.51.0'
     - r-base
     - r-circlize
     - r-formula
@@ -38,10 +39,10 @@ requirements:
     - r-survival
     - r-tkrplot
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genetclassifier >=1.40.0,<1.41.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-phenotest >=1.48.0,<1.49.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genetclassifier >=1.42.0,<1.43.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-phenotest >=1.50.0,<1.51.0'
     - r-base
     - r-circlize
     - r-formula
diff --git a/recipes/bioconductor-cancerclass/meta.yaml b/recipes/bioconductor-cancerclass/meta.yaml
index 7b84f85d34133..ee3fb82ad436d 100644
--- a/recipes/bioconductor-cancerclass/meta.yaml
+++ b/recipes/bioconductor-cancerclass/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.44.0" %}
+{% set version = "1.46.0" %}
 {% set name = "cancerclass" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 1b773f50fc0ab3bc1e0555a2807d9c76
+  md5: b2e5d6ec200ee08476480fa1f0a1577d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cancerclass", max_pin="x.x") }}'
 # Suggests: cancerdata
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-binom
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-binom
   build:
diff --git a/recipes/bioconductor-cancerdata/meta.yaml b/recipes/bioconductor-cancerdata/meta.yaml
index 6e8a1974a3587..8b5aaa6fb459c 100644
--- a/recipes/bioconductor-cancerdata/meta.yaml
+++ b/recipes/bioconductor-cancerdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "cancerdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 23d4242144544786e0327a3144d8a6c6
+  md5: 7baa088ef320a0222a897987ea8c3e8b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cancerdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-cancerdata/post-link.sh b/recipes/bioconductor-cancerdata/post-link.sh
index 634f9917cbc85..f48bb85329be6 100644
--- a/recipes/bioconductor-cancerdata/post-link.sh
+++ b/recipes/bioconductor-cancerdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "cancerdata-1.38.0"
+installBiocDataPackage.sh "cancerdata-1.40.0"
diff --git a/recipes/bioconductor-canine.db/meta.yaml b/recipes/bioconductor-canine.db/meta.yaml
index 811c40b827bca..9afadfb4280f1 100644
--- a/recipes/bioconductor-canine.db/meta.yaml
+++ b/recipes/bioconductor-canine.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "canine.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: a876bb01eda62604a32a96b46e34162b
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-canine.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.cf.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.cf.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.cf.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.cf.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-canine.db0/meta.yaml b/recipes/bioconductor-canine.db0/meta.yaml
index b83fd7ffeaf32..9e295898ab473 100644
--- a/recipes/bioconductor-canine.db0/meta.yaml
+++ b/recipes/bioconductor-canine.db0/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "canine.db0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: da4af1b026fe2775a020addd13920f71
+  md5: dc4fff8ed0a758ddff3f52aa0e8652c6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-canine.db0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-canine.db0/post-link.sh b/recipes/bioconductor-canine.db0/post-link.sh
index e7e67a934420c..e5e86dee05068 100644
--- a/recipes/bioconductor-canine.db0/post-link.sh
+++ b/recipes/bioconductor-canine.db0/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "canine.db0-3.17.0"
+installBiocDataPackage.sh "canine.db0-3.18.0"
diff --git a/recipes/bioconductor-canine2.db/meta.yaml b/recipes/bioconductor-canine2.db/meta.yaml
index 6682cbee36fcb..6b4c2bc532688 100644
--- a/recipes/bioconductor-canine2.db/meta.yaml
+++ b/recipes/bioconductor-canine2.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "canine2.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 24727f27cdf1e324f097a76db81dfc1d
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-canine2.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.cf.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.cf.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.cf.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.cf.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-canine2cdf/meta.yaml b/recipes/bioconductor-canine2cdf/meta.yaml
index 37ab92dcedc44..9d689a5971930 100644
--- a/recipes/bioconductor-canine2cdf/meta.yaml
+++ b/recipes/bioconductor-canine2cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "canine2cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 78740cde98c75e6680470564a4df74c3
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-canine2cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-canine2probe/meta.yaml b/recipes/bioconductor-canine2probe/meta.yaml
index fb4c210c8fd5c..6f54871ac6b19 100644
--- a/recipes/bioconductor-canine2probe/meta.yaml
+++ b/recipes/bioconductor-canine2probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "canine2probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 7de0f4ea616e8662dc2eaa9ab78d1f13
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-canine2probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-caninecdf/meta.yaml b/recipes/bioconductor-caninecdf/meta.yaml
index 70b08561a5922..f80e3709dcb35 100644
--- a/recipes/bioconductor-caninecdf/meta.yaml
+++ b/recipes/bioconductor-caninecdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "caninecdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 656f845cc66890015a4e13c5304ec262
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-caninecdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-canineprobe/meta.yaml b/recipes/bioconductor-canineprobe/meta.yaml
index 1856806650678..a85ebdab28fe3 100644
--- a/recipes/bioconductor-canineprobe/meta.yaml
+++ b/recipes/bioconductor-canineprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "canineprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: e5467bc9b7e54c5adce6b409ba7df767
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-canineprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-cardelino/meta.yaml b/recipes/bioconductor-cardelino/meta.yaml
index 2fdbcbb7f4d20..684c1386c8a20 100644
--- a/recipes/bioconductor-cardelino/meta.yaml
+++ b/recipes/bioconductor-cardelino/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "cardelino" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: ba9264af6b626d01cb7700cd264ca4c7
+  md5: 363c06547419f29e1cdfe473651e1861
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cardelino", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, foreach, knitr, pcaMethods, rmarkdown, testthat, VGAM
 requirements:
   host:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-snpstats >=1.50.0,<1.51.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-snpstats >=1.52.0,<1.53.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-combinat
     - r-ggplot2
@@ -35,12 +36,12 @@ requirements:
     - r-pheatmap
     - r-vcfr
   run:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-snpstats >=1.50.0,<1.51.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-snpstats >=1.52.0,<1.53.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-combinat
     - r-ggplot2
diff --git a/recipes/bioconductor-cardinal/meta.yaml b/recipes/bioconductor-cardinal/meta.yaml
index a4fa219fb80e4..ebb5c8fde4502 100644
--- a/recipes/bioconductor-cardinal/meta.yaml
+++ b/recipes/bioconductor-cardinal/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.2.1" %}
+{% set version = "3.4.3" %}
 {% set name = "Cardinal" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7c28538283f8b6b79f6b7e66f5ac7fcb
+  md5: ee7f799a94a4c3cd1946feb2b1db9dd4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cardinal", max_pin="x.x") }}'
 # Suggests: BiocStyle, testthat, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-matter >=2.2.0,<2.3.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-cardinalio >=1.0.0,<1.1.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-matter >=2.4.0,<2.5.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-irlba
     - r-magrittr
@@ -34,18 +36,18 @@ requirements:
     - r-mclust
     - r-nlme
     - r-signal
-    - r-sp
     - r-viridislite
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-matter >=2.2.0,<2.3.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-cardinalio >=1.0.0,<1.1.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-matter >=2.4.0,<2.5.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-irlba
     - r-magrittr
@@ -53,7 +55,6 @@ requirements:
     - r-mclust
     - r-nlme
     - r-signal
-    - r-sp
     - r-viridislite
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-cardinalio/build.sh b/recipes/bioconductor-cardinalio/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-cardinalio/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-cardinalio/meta.yaml b/recipes/bioconductor-cardinalio/meta.yaml
new file mode 100644
index 0000000000000..e51480d5e4ba8
--- /dev/null
+++ b/recipes/bioconductor-cardinalio/meta.yaml
@@ -0,0 +1,47 @@
+{% set version = "1.0.0" %}
+{% set name = "CardinalIO" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 746846f9fda38de9fe2c3dd4c49c18e1
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cardinalio", max_pin="x.x") }}'
+# Suggests: BiocStyle, testthat, knitr, rmarkdown
+requirements:
+  host:
+    - 'bioconductor-matter >=2.4.0,<2.5.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - r-base
+    - r-ontologyindex
+    - libblas
+    - liblapack
+  run:
+    - 'bioconductor-matter >=2.4.0,<2.5.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - r-base
+    - r-ontologyindex
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - make
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'Read and write mass spectrometry imaging files'
+  description: 'Fast and efficient reading and writing of mass spectrometry imaging data files. Supports imzML and Analyze 7.5 formats. Provides ontologies for mass spectrometry imaging.'
+
diff --git a/recipes/bioconductor-cardinalworkflows/meta.yaml b/recipes/bioconductor-cardinalworkflows/meta.yaml
index 55aa4097d3b5f..9935acb2c639a 100644
--- a/recipes/bioconductor-cardinalworkflows/meta.yaml
+++ b/recipes/bioconductor-cardinalworkflows/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "CardinalWorkflows" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8a8b9945c7f7b5287510917c6bc1e1a4
+  md5: 54c51a2ec2f20f96ad9e60c16eeb2ccb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cardinalworkflows", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-cardinal >=3.2.0,<3.3.0'
+    - 'bioconductor-cardinal >=3.4.0,<3.5.0'
     - r-base
   run:
-    - 'bioconductor-cardinal >=3.2.0,<3.3.0'
+    - 'bioconductor-cardinal >=3.4.0,<3.5.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-cardinalworkflows/post-link.sh b/recipes/bioconductor-cardinalworkflows/post-link.sh
index 375cb5b31f89e..d557ce84baab0 100644
--- a/recipes/bioconductor-cardinalworkflows/post-link.sh
+++ b/recipes/bioconductor-cardinalworkflows/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "cardinalworkflows-1.32.0"
+installBiocDataPackage.sh "cardinalworkflows-1.34.0"
diff --git a/recipes/bioconductor-carnival/meta.yaml b/recipes/bioconductor-carnival/meta.yaml
index f9fa8303cb483..565eefdb379a4 100644
--- a/recipes/bioconductor-carnival/meta.yaml
+++ b/recipes/bioconductor-carnival/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.10.0" %}
+{% set version = "2.12.0" %}
 {% set name = "CARNIVAL" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d92b0f48e86019ba880d96574038a7b2
+  md5: c5457d5d859c16cbec56532338f64fb0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-carnival", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RefManageR, BiocStyle, covr, knitr, testthat (>= 3.0.0), sessioninfo
 requirements:
diff --git a/recipes/bioconductor-casper/meta.yaml b/recipes/bioconductor-casper/meta.yaml
index 557323da87a07..3142caba5767b 100644
--- a/recipes/bioconductor-casper/meta.yaml
+++ b/recipes/bioconductor-casper/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.34.0" %}
+{% set version = "2.36.0" %}
 {% set name = "casper" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f43788dc14c1c51dcfde295920c6f5e6
+  md5: 4c9fc29e3b92d5b493953ea97436556a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-casper", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-ebarrays >=2.64.0,<2.65.0'
-    - 'bioconductor-gaga >=2.46.0,<2.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-ebarrays >=2.66.0,<2.67.0'
+    - 'bioconductor-gaga >=2.48.0,<2.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-coda
     - r-gtools
@@ -41,18 +42,18 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-ebarrays >=2.64.0,<2.65.0'
-    - 'bioconductor-gaga >=2.46.0,<2.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-ebarrays >=2.66.0,<2.67.0'
+    - 'bioconductor-gaga >=2.48.0,<2.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-coda
     - r-gtools
diff --git a/recipes/bioconductor-catalyst/meta.yaml b/recipes/bioconductor-catalyst/meta.yaml
index 5d2276155f31a..42b526eec0739 100644
--- a/recipes/bioconductor-catalyst/meta.yaml
+++ b/recipes/bioconductor-catalyst/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "CATALYST" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 727b6a6736deb00b2a649bffc267ade6
+  md5: 6ce647576b86ebdf9fe0933fd87b79ce
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-catalyst", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, diffcyt, flowWorkspace, ggcyto, knitr, openCyto, rmarkdown, testthat, uwot
 requirements:
   host:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-consensusclusterplus >=1.64.0,<1.65.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowsom >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-consensusclusterplus >=1.66.0,<1.67.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowsom >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-cowplot
@@ -39,7 +40,6 @@ requirements:
     - r-ggrepel
     - r-ggridges
     - r-gridextra
-    - r-magrittr
     - r-matrix
     - r-matrixstats
     - r-nnls
@@ -49,14 +49,14 @@ requirements:
     - r-rtsne
     - r-scales
   run:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-consensusclusterplus >=1.64.0,<1.65.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowsom >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-consensusclusterplus >=1.66.0,<1.67.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowsom >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-cowplot
@@ -67,7 +67,6 @@ requirements:
     - r-ggrepel
     - r-ggridges
     - r-gridextra
-    - r-magrittr
     - r-matrix
     - r-matrixstats
     - r-nnls
@@ -83,6 +82,6 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: 'GPL (>=2)'
   summary: 'Cytometry dATa anALYSis Tools'
-  description: 'Mass cytometry (CyTOF) uses heavy metal isotopes rather than fluorescent tags as reporters to label antibodies, thereby substantially decreasing spectral overlap and allowing for examination of over 50 parameters at the single cell level. While spectral overlap is significantly less pronounced in CyTOF than flow cytometry, spillover due to detection sensitivity, isotopic impurities, and oxide formation can impede data interpretability. We designed CATALYST (Cytometry dATa anALYSis Tools) to provide a pipeline for preprocessing of cytometry data, including i) normalization using bead standards, ii) single-cell deconvolution, and iii) bead-based compensation.'
+  description: 'CATALYST provides tools for preprocessing of and differential discovery in cytometry data such as FACS, CyTOF, and IMC. Preprocessing includes i) normalization using bead standards, ii) single-cell deconvolution, and iii) bead-based compensation. For differential discovery, the package provides a number of convenient functions for data processing (e.g., clustering, dimension reduction), as well as a suite of visualizations for exploratory data analysis and exploration of results from differential abundance (DA) and state (DS) analysis in order to identify differences in composition and expression profiles at the subpopulation-level, respectively.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
diff --git a/recipes/bioconductor-category/meta.yaml b/recipes/bioconductor-category/meta.yaml
index 19020d0a70faf..a746fe351958e 100644
--- a/recipes/bioconductor-category/meta.yaml
+++ b/recipes/bioconductor-category/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.66.0" %}
+{% set version = "2.68.0" %}
 {% set name = "Category" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6dbd5bb859ad4567680561e085cd0765
+  md5: d84fb36419834bb84721436d7f956932
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-category", max_pin="x.x") }}'
   noarch: generic
 # Suggests: EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6), hgu95av2.db, KEGGREST, karyoploteR, geneplotter, limma, lattice, RUnit, org.Sc.sgd.db, GOstats, GO.db
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
     - r-base
     - r-dbi
     - r-matrix
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
     - r-base
     - r-dbi
     - r-matrix
diff --git a/recipes/bioconductor-categorycompare/meta.yaml b/recipes/bioconductor-categorycompare/meta.yaml
index 316ebf2f21eaf..1a04329db5a0c 100644
--- a/recipes/bioconductor-categorycompare/meta.yaml
+++ b/recipes/bioconductor-categorycompare/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.44.0" %}
+{% set version = "1.46.0" %}
 {% set name = "categoryCompare" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,40 +11,41 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 12b838d68868bdf213889ed07657d373
+  md5: 9809c7142b4af81d181bf8d8f7e0f815
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-categorycompare", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, GO.db, KEGGREST, estrogen, org.Hs.eg.db, hgu95av2.db, limma, affy, genefilter, rmarkdown
 # SystemRequirements: Cytoscape (>= 3.6.1) (if used for visualization of results, heavily suggested)
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-category >=2.66.0,<2.67.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-rcy3 >=2.20.0,<2.21.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-category >=2.68.0,<2.69.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-rcy3 >=2.22.0,<2.23.0'
     - r-base
     - r-colorspace
     - r-hwriter
     - 'cytoscape >=3.6.1'
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-category >=2.66.0,<2.67.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-rcy3 >=2.20.0,<2.21.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-category >=2.68.0,<2.69.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-rcy3 >=2.22.0,<2.23.0'
     - r-base
     - r-colorspace
     - r-hwriter
diff --git a/recipes/bioconductor-causalr/meta.yaml b/recipes/bioconductor-causalr/meta.yaml
index b96b70a4f9a8b..19336b1df1182 100644
--- a/recipes/bioconductor-causalr/meta.yaml
+++ b/recipes/bioconductor-causalr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "CausalR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a1a92153e981da4a487d5c42ca15994a
+  md5: 408b3cc6bc7a45715e6c07095f61ca2b
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-causalr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, RUnit, BiocGenerics
 requirements:
diff --git a/recipes/bioconductor-cbaf/meta.yaml b/recipes/bioconductor-cbaf/meta.yaml
index 8a3029fa4092c..8e99a667fb4cb 100644
--- a/recipes/bioconductor-cbaf/meta.yaml
+++ b/recipes/bioconductor-cbaf/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "cbaf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c4489ed5d1141f61152a666bec15104c
+  md5: e3c093194c8fdcbd04ca035dddeaf5f5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cbaf", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-cbioportaldata >=2.12.0,<2.13.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-cbioportaldata >=2.14.0,<2.15.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
     - r-base
     - r-gplots
     - r-openxlsx
     - r-rcolorbrewer
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-cbioportaldata >=2.12.0,<2.13.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-cbioportaldata >=2.14.0,<2.15.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
     - r-base
     - r-gplots
     - r-openxlsx
diff --git a/recipes/bioconductor-cbea/meta.yaml b/recipes/bioconductor-cbea/meta.yaml
index 0b3b567cbbf5d..63e685b38f7f5 100644
--- a/recipes/bioconductor-cbea/meta.yaml
+++ b/recipes/bioconductor-cbea/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.3.0" %}
+{% set version = "1.2.0" %}
 {% set name = "CBEA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: abb5373c75d6328cedad978f32f2c0e7
+  md5: 20761b06df9cf37c59172508ff8cd01d
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cbea", max_pin="x.x") }}'
 # Suggests: phyloseq, BiocStyle, covr, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 3.0.0), tidyverse, roxygen2, mia, purrr
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocset >=1.14.0,<1.15.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-treesummarizedexperiment >=2.8.0,<2.9.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocset >=1.16.0,<1.17.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-treesummarizedexperiment >=2.10.0,<2.11.0'
     - r-base
     - r-dplyr
     - r-fitdistrplus
@@ -40,10 +41,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocset >=1.14.0,<1.15.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-treesummarizedexperiment >=2.8.0,<2.9.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocset >=1.16.0,<1.17.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-treesummarizedexperiment >=2.10.0,<2.11.0'
     - r-base
     - r-dplyr
     - r-fitdistrplus
diff --git a/recipes/bioconductor-cbioportaldata/meta.yaml b/recipes/bioconductor-cbioportaldata/meta.yaml
index 3f964fd3b87ac..4508b5319a9db 100644
--- a/recipes/bioconductor-cbioportaldata/meta.yaml
+++ b/recipes/bioconductor-cbioportaldata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.12.0" %}
+{% set version = "2.14.0" %}
 {% set name = "cBioPortalData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 876930b2b73eb4f6d2515d187b925278
+  md5: fc51f3b952b9c31900365adc94f85585
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cbioportaldata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, survival, survminer, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-anvil >=1.12.0,<1.13.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-raggedexperiment >=1.24.0,<1.25.0'
-    - 'bioconductor-rtcgatoolbox >=2.30.0,<2.31.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tcgautils >=1.20.0,<1.21.0'
+    - 'bioconductor-anvil >=1.14.0,<1.15.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-raggedexperiment >=1.26.0,<1.27.0'
+    - 'bioconductor-rtcgatoolbox >=2.32.0,<2.33.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tcgautils >=1.22.0,<1.23.0'
     - r-base
     - r-digest
     - r-dplyr
@@ -40,17 +41,17 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-anvil >=1.12.0,<1.13.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-raggedexperiment >=1.24.0,<1.25.0'
-    - 'bioconductor-rtcgatoolbox >=2.30.0,<2.31.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tcgautils >=1.20.0,<1.21.0'
+    - 'bioconductor-anvil >=1.14.0,<1.15.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-raggedexperiment >=1.26.0,<1.27.0'
+    - 'bioconductor-rtcgatoolbox >=2.32.0,<2.33.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tcgautils >=1.22.0,<1.23.0'
     - r-base
     - r-digest
     - r-dplyr
diff --git a/recipes/bioconductor-cbnplot/meta.yaml b/recipes/bioconductor-cbnplot/meta.yaml
index e261a401638c6..8ca2a36fb2135 100644
--- a/recipes/bioconductor-cbnplot/meta.yaml
+++ b/recipes/bioconductor-cbnplot/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "CBNplot" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0717efc5c7c4f3b2b957528ff99c8dea
+  md5: d589e9361caf3409d65345cc48e5ccee
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cbnplot", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, arules, concaveman, ReactomePA, bnviewer, DESeq2, GEOquery, rmarkdown, withr, BiocStyle, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-depmap >=1.14.0,<1.15.0'
-    - 'bioconductor-enrichplot >=1.20.0,<1.21.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-graphite >=1.46.0,<1.47.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-depmap >=1.16.0,<1.17.0'
+    - 'bioconductor-enrichplot >=1.22.0,<1.23.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-graphite >=1.48.0,<1.49.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - 'r-bnlearn >=4.7'
     - r-dplyr
@@ -48,13 +49,13 @@ requirements:
     - r-stringr
     - r-tidyr
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-depmap >=1.14.0,<1.15.0'
-    - 'bioconductor-enrichplot >=1.20.0,<1.21.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-graphite >=1.46.0,<1.47.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-depmap >=1.16.0,<1.17.0'
+    - 'bioconductor-enrichplot >=1.22.0,<1.23.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-graphite >=1.48.0,<1.49.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - 'r-bnlearn >=4.7'
     - r-dplyr
diff --git a/recipes/bioconductor-cbpmanager/meta.yaml b/recipes/bioconductor-cbpmanager/meta.yaml
index 5e9b4e7ee8d5f..e35ef4a737405 100644
--- a/recipes/bioconductor-cbpmanager/meta.yaml
+++ b/recipes/bioconductor-cbpmanager/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "cbpManager" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 428adb2f63dce7a4cbcba310d13bb32a
+  md5: 6567afab9427e6ee44a029fa5be314e7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cbpmanager", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, rmarkdown, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
     - r-base
     - r-dplyr
     - r-dt
@@ -33,13 +34,14 @@ requirements:
     - r-rapportools
     - r-reticulate
     - r-rintrojs
+    - r-rlang
     - r-shiny
     - r-shinybs
     - r-shinycssloaders
     - r-shinydashboard
     - r-vroom
   run:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
     - r-base
     - r-dplyr
     - r-dt
@@ -51,6 +53,7 @@ requirements:
     - r-rapportools
     - r-reticulate
     - r-rintrojs
+    - r-rlang
     - r-shiny
     - r-shinybs
     - r-shinycssloaders
diff --git a/recipes/bioconductor-ccdata/meta.yaml b/recipes/bioconductor-ccdata/meta.yaml
index 5f24f35515072..e552cec2d123c 100644
--- a/recipes/bioconductor-ccdata/meta.yaml
+++ b/recipes/bioconductor-ccdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "ccdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d21508b620d5328d66111ed0250bcaa8
+  md5: 60cbd595e53467fd61e1edc4f8ea47e7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ccdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ccdata/post-link.sh b/recipes/bioconductor-ccdata/post-link.sh
index cdc12359a9a68..3c5a6ff31dcdd 100644
--- a/recipes/bioconductor-ccdata/post-link.sh
+++ b/recipes/bioconductor-ccdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "ccdata-1.26.0"
+installBiocDataPackage.sh "ccdata-1.28.0"
diff --git a/recipes/bioconductor-ccfindr/build_failure.osx-64.yaml b/recipes/bioconductor-ccfindr/build_failure.osx-64.yaml
new file mode 100644
index 0000000000000..f96432c2ea200
--- /dev/null
+++ b/recipes/bioconductor-ccfindr/build_failure.osx-64.yaml
@@ -0,0 +1,104 @@
+recipe_sha: 284d8b5d60d001aad42c11aa0f88615ff84ff828b15ac43defb45c3fd2d1f416  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+log: |-
+  F90=$PREFIX/bin/x86_64-apple-darwin13.4.0-gfortran
+  F95=$PREFIX/bin/x86_64-apple-darwin13.4.0-gfortran
+  FC=$PREFIX/bin/x86_64-apple-darwin13.4.0-gfortran
+  FC_FOR_BUILD=$PREFIX/bin/x86_64-apple-darwin13.4.0-gfortran
+  FFLAGS=-march=core2 -mtune=haswell -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-ccfindr-1.22.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
+  FORTRANFLAGS=-march=core2 -mtune=haswell -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-ccfindr-1.22.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
+  GFORTRAN=$PREFIX/bin/x86_64-apple-darwin13.4.0-gfortran
+  INFO: activate_clang_osx-64.sh made the following environmental changes:
+  AR=x86_64-apple-darwin13.4.0-ar
+  AS=x86_64-apple-darwin13.4.0-as
+  CC=x86_64-apple-darwin13.4.0-clang
+  CC_FOR_BUILD=$PREFIX/bin/x86_64-apple-darwin13.4.0-clang
+  CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-ccfindr-1.22.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
+  CHECKSYMS=x86_64-apple-darwin13.4.0-checksyms
+  CLANG=x86_64-apple-darwin13.4.0-clang
+  CMAKE_ARGS=-DCMAKE_AR=$PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_CXX_COMPILER_AR=$PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_C_COMPILER_AR=$PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_RANLIB=$PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_CXX_COMPILER_RANLIB=$PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_C_COMPILER_RANLIB=$PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_LINKER=$PREFIX/bin/x86_64-apple-darwin13.4.0-ld -DCMAKE_STRIP=$PREFIX/bin/x86_64-apple-darwin13.4.0-strip -DCMAKE_INSTALL_NAME_TOOL=$PREFIX/bin/x86_64-apple-darwin13.4.0-install_name_tool -DCMAKE_LIBTOOL=$PREFIX/bin/x86_64-apple-darwin13.4.0-libtool -DCMAKE_OSX_DEPLOYMENT_TARGET=10.9 -DCMAKE_BUILD_TYPE=Release -DCMAKE_OSX_SYSROOT=/Applications/Xcode_14.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_FIND_APPBUNDLE=LAST -DCMAKE_INSTALL_PREFIX=$PREFIX -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_PROGRAM_PATH=$BUILD_PREFIX/bin;$PREFIX/bin
+  CMAKE_PREFIX_PATH=:$PREFIX
+  CONDA_TOOLCHAIN_BUILD=x86_64-apple-darwin13.4.0
+  CONDA_TOOLCHAIN_HOST=x86_64-apple-darwin13.4.0
+  CPPFLAGS=-D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.9
+  DEBUG_CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -Og -g -Wall -Wextra -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-ccfindr-1.22.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
+  HOST=x86_64-apple-darwin13.4.0
+  INSTALL_NAME_TOOL=x86_64-apple-darwin13.4.0-install_name_tool
+  LD=x86_64-apple-darwin13.4.0-ld
+  LDFLAGS=-Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,$PREFIX/lib -L$PREFIX/lib
+  LDFLAGS_LD=-pie -headerpad_max_install_names -dead_strip_dylibs -rpath $PREFIX/lib -L$PREFIX/lib
+  LIBTOOL=x86_64-apple-darwin13.4.0-libtool
+  LIPO=x86_64-apple-darwin13.4.0-lipo
+  MESON_ARGS=--buildtype release --prefix=$PREFIX -Dlibdir=lib
+  NM=x86_64-apple-darwin13.4.0-nm
+  NMEDIT=x86_64-apple-darwin13.4.0-nmedit
+  OBJC=x86_64-apple-darwin13.4.0-clang
+  OBJC_FOR_BUILD=$PREFIX/bin/x86_64-apple-darwin13.4.0-clang
+  OTOOL=x86_64-apple-darwin13.4.0-otool
+  PAGESTUFF=x86_64-apple-darwin13.4.0-pagestuff
+  RANLIB=x86_64-apple-darwin13.4.0-ranlib
+  REDO_PREBINDING=x86_64-apple-darwin13.4.0-redo_prebinding
+  SDKROOT=/Applications/Xcode_14.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk
+  SEGEDIT=x86_64-apple-darwin13.4.0-segedit
+  SEG_ADDR_TABLE=x86_64-apple-darwin13.4.0-seg_addr_table
+  SEG_HACK=x86_64-apple-darwin13.4.0-seg_hack
+  SIZE=x86_64-apple-darwin13.4.0-size
+  STRINGS=x86_64-apple-darwin13.4.0-strings
+  STRIP=x86_64-apple-darwin13.4.0-strip
+  _CONDA_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_apple_darwin13_4_0
+  ac_cv_func_malloc_0_nonnull=yes
+  ac_cv_func_realloc_0_nonnull=yes
+  build_alias=x86_64-apple-darwin13.4.0
+  host_alias=x86_64-apple-darwin13.4.0
+  INFO: activate_clangxx_osx-64.sh made the following environmental changes:
+  CLANGXX=x86_64-apple-darwin13.4.0-clang
+  CXX=x86_64-apple-darwin13.4.0-clang
+  CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc -fvisibility-inlines-hidden -fmessage-length=0 -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-ccfindr-1.22.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
+  CXX_FOR_BUILD=$PREFIX/bin/x86_64-apple-darwin13.4.0-clang
+  DEBUG_CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc -fvisibility-inlines-hidden -fmessage-length=0 -Og -g -Wall -Wextra -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-ccfindr-1.22.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
+  INFO: activate_clang_osx-64.sh made the following environmental changes:
+  CC_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang
+  CMAKE_ARGS=-DCMAKE_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_CXX_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_C_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_CXX_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_C_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_LINKER=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ld -DCMAKE_STRIP=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-strip -DCMAKE_INSTALL_NAME_TOOL=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-install_name_tool -DCMAKE_LIBTOOL=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-libtool -DCMAKE_OSX_DEPLOYMENT_TARGET=10.9 -DCMAKE_BUILD_TYPE=Release -DCMAKE_OSX_SYSROOT=/Applications/Xcode_14.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_FIND_APPBUNDLE=LAST -DCMAKE_INSTALL_PREFIX=$PREFIX -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_PROGRAM_PATH=$BUILD_PREFIX/bin;$PREFIX/bin
+  OBJC_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang
+  -CC_FOR_BUILD=$PREFIX/bin/x86_64-apple-darwin13.4.0-clang
+  -CMAKE_ARGS=-DCMAKE_AR=$PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_CXX_COMPILER_AR=$PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_C_COMPILER_AR=$PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_RANLIB=$PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_CXX_COMPILER_RANLIB=$PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_C_COMPILER_RANLIB=$PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_LINKER=$PREFIX/bin/x86_64-apple-darwin13.4.0-ld -DCMAKE_STRIP=$PREFIX/bin/x86_64-apple-darwin13.4.0-strip -DCMAKE_INSTALL_NAME_TOOL=$PREFIX/bin/x86_64-apple-darwin13.4.0-install_name_tool -DCMAKE_LIBTOOL=$PREFIX/bin/x86_64-apple-darwin13.4.0-libtool -DCMAKE_OSX_DEPLOYMENT_TARGET=10.9 -DCMAKE_BUILD_TYPE=Release -DCMAKE_OSX_SYSROOT=/Applications/Xcode_14.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_FIND_APPBUNDLE=LAST -DCMAKE_INSTALL_PREFIX=$PREFIX -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_PROGRAM_PATH=$BUILD_PREFIX/bin;$PREFIX/bin
+  -OBJC_FOR_BUILD=$PREFIX/bin/x86_64-apple-darwin13.4.0-clang
+  INFO: activate_clangxx_osx-64.sh made the following environmental changes:
+  CXX_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang
+  -CXX_FOR_BUILD=$PREFIX/bin/x86_64-apple-darwin13.4.0-clang
+  * installing to library /opt/mambaforge/envs/bioconda/conda-bld/bioconductor-ccfindr_1703622619603/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/R/library
+  * installing *source* package ccfindR ...
+  ** using staged installation
+  ** libs
+  dyld[12683]: Library not loaded: '@rpath/libclang-cpp.15.dylib'
+    Referenced from: '/opt/mambaforge/envs/bioconda/pkgs/clang-15-15.0.7-default_h6b1ee41_4/bin/clang-15'
+    Reason: tried: '/opt/mambaforge/envs/bioconda/pkgs/clang-15-15.0.7-default_h6b1ee41_4/bin/../lib/libclang-cpp.15.dylib' (no such file), '/opt/mambaforge/envs/bioconda/pkgs/clang-15-15.0.7-default_h6b1ee41_4/bin/../lib/libclang-cpp.15.dylib' (no such file), '/opt/mambaforge/envs/bioconda/pkgs/clang-15-15.0.7-default_h6b1ee41_4/bin/../lib/libclang-cpp.15.dylib' (no such file), '/opt/mambaforge/envs/bioconda/pkgs/clang-15-15.0.7-default_h6b1ee41_4/bin/../lib/libclang-cpp.15.dylib' (no such file), '/opt/mambaforge/envs/bioconda/conda-bld/bioconductor-ccfindr_1703622619603/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/R/lib/libclang-cpp.15.dylib' (no such file), '/opt/mambaforge/envs/bioconda/conda-bld/bioconductor-ccfindr_1703622619603/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/libclang-cpp.15.dylib' (no such file), '/Users/runner/miniforge3/conda-bld/r-base-split_1700316070281/_build_env/lib/jvm/lib/server/libclang-cpp.15.dylib' (no such file), '/opt/mambaforge/envs/bioconda/conda-bld/bioconductor-ccfindr_1703622619603/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/R/lib/libclang-cpp.15.dylib' (no such file), '/opt/mambaforge/envs/bioconda/conda-bld/bioconductor-ccfindr_1703622619603/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/libclang-cpp.15.dylib' (no such file), '/Users/runner/miniforge3/conda-bld/r-base-split_1700316070281/_build_env/lib/jvm/lib/server/libclang-cpp.15.dylib' (no such file)
+  using C compiler: NA
+  using C11
+  using SDK: 
+  x86_64-apple-darwin13.4.0-clang -std=gnu11 -I"$PREFIX/lib/R/include" -DNDEBUG  -I'$PREFIX/lib/R/library/Rcpp/include' -I'$PREFIX/lib/R/library/RcppEigen/include' -D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.9 -I$PREFIX/include    -fPIC  -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc -fvisibility-inlines-hidden -fmessage-length=0 -isystem $PREFIX/include -fdebug-prefix-map=/Users/runner/miniforge3/conda-bld/r-base-split_1700316070281/work=/usr/local/src/conda/r-base-4.3.2 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix  -c RcppExports.cpp -o RcppExports.o
+  dyld[12689]: Library not loaded: '@rpath/libclang-cpp.15.dylib'
+    Referenced from: '/opt/mambaforge/envs/bioconda/pkgs/clang-15-15.0.7-default_h6b1ee41_4/bin/clang-15'
+    Reason: tried: '/opt/mambaforge/envs/bioconda/pkgs/clang-15-15.0.7-default_h6b1ee41_4/bin/../lib/libclang-cpp.15.dylib' (no such file), '/opt/mambaforge/envs/bioconda/pkgs/clang-15-15.0.7-default_h6b1ee41_4/bin/../lib/libclang-cpp.15.dylib' (no such file), '/opt/mambaforge/envs/bioconda/pkgs/clang-15-15.0.7-default_h6b1ee41_4/bin/../lib/libclang-cpp.15.dylib' (no such file), '/opt/mambaforge/envs/bioconda/pkgs/clang-15-15.0.7-default_h6b1ee41_4/bin/../lib/libclang-cpp.15.dylib' (no such file), '/opt/mambaforge/envs/bioconda/conda-bld/bioconductor-ccfindr_1703622619603/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/R/lib/libclang-cpp.15.dylib' (no such file), '/opt/mambaforge/envs/bioconda/conda-bld/bioconductor-ccfindr_1703622619603/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/libclang-cpp.15.dylib' (no such file), '/Users/runner/miniforge3/conda-bld/r-base-split_1700316070281/_build_env/lib/jvm/lib/server/libclang-cpp.15.dylib' (no such file), '/opt/mambaforge/envs/bioconda/conda-bld/bioconductor-ccfindr_1703622619603/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/R/lib/libclang-cpp.15.dylib' (no such file), '/opt/mambaforge/envs/bioconda/conda-bld/bioconductor-ccfindr_1703622619603/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/libclang-cpp.15.dylib' (no such file), '/Users/runner/miniforge3/conda-bld/r-base-split_1700316070281/_build_env/lib/jvm/lib/server/libclang-cpp.15.dylib' (no such file)
+  make: *** [/opt/mambaforge/envs/bioconda/conda-bld/bioconductor-ccfindr_1703622619603/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/R/etc/Makeconf:200: RcppExports.o] Abort trap: 6
+  ERROR: compilation failed for package ccfindR
+  * removing /opt/mambaforge/envs/bioconda/conda-bld/bioconductor-ccfindr_1703622619603/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/R/library/ccfindR
+  Traceback (most recent call last):
+    File "/opt/mambaforge/envs/bioconda/bin/conda-mambabuild", line 10, in <module>
+      sys.exit(main())
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
+      call_conda_build(action, config)
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
+      result = api.build(
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
+      return build_tree(
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
+      packages_from_this = build(metadata, stats,
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
+      utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
+      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
+      raise subprocess.CalledProcessError(proc.returncode, _args)
+  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/mambaforge/envs/bioconda/conda-bld/bioconductor-ccfindr_1703622619603/work/conda_build.sh']' returned non-zero exit status 1.
+# Last 100 lines of the build log.
diff --git a/recipes/bioconductor-ccfindr/meta.yaml b/recipes/bioconductor-ccfindr/meta.yaml
index 8669dd286eaa1..885a9ad43f114 100644
--- a/recipes/bioconductor-ccfindr/meta.yaml
+++ b/recipes/bioconductor-ccfindr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "ccfindR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8862cd343902a030a29603942d4dede8
+  md5: 0a0dd7c35273c39673f992bed7fa952d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ccfindr", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, rmarkdown
+# SystemRequirements: gsl
 requirements:
   host:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-ape
     - r-base
     - r-gtools
@@ -36,10 +38,11 @@ requirements:
     - r-rtsne
     - libblas
     - liblapack
+    - gsl
   run:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-ape
     - r-base
     - r-gtools
@@ -51,6 +54,7 @@ requirements:
     - 'r-rdpack >=0.7'
     - r-rmpi
     - r-rtsne
+    - gsl
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
diff --git a/recipes/bioconductor-ccimpute/meta.yaml b/recipes/bioconductor-ccimpute/meta.yaml
index 21b4a6711e712..14e1190d5d502 100644
--- a/recipes/bioconductor-ccimpute/meta.yaml
+++ b/recipes/bioconductor-ccimpute/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.1" %}
+{% set version = "1.4.0" %}
 {% set name = "ccImpute" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 890c259cabc9cd35bab959d4f698f5d9
+  md5: f402177e3fc7bbbcac504c956889dfa9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ccimpute", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, BiocStyle, sessioninfo, scRNAseq, scater, SingleCellExperiment, mclust, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-simlr >=1.26.0,<1.27.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-simlr >=1.28.0,<1.29.0'
     - r-base
     - r-matrixstats
     - r-rcpp
@@ -29,8 +30,8 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-simlr >=1.26.0,<1.27.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-simlr >=1.28.0,<1.29.0'
     - r-base
     - r-matrixstats
     - r-rcpp
diff --git a/recipes/bioconductor-ccl4/meta.yaml b/recipes/bioconductor-ccl4/meta.yaml
index d9f85af551bc9..6179644dbc14d 100644
--- a/recipes/bioconductor-ccl4/meta.yaml
+++ b/recipes/bioconductor-ccl4/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "CCl4" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a0bfca2abdda039b9376e9cc8ec71333
+  md5: 3247cf1db347f959d908e88b5e8febb5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ccl4", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ccl4/post-link.sh b/recipes/bioconductor-ccl4/post-link.sh
index e2e4e1647ae6f..8bd8b92dae2ca 100644
--- a/recipes/bioconductor-ccl4/post-link.sh
+++ b/recipes/bioconductor-ccl4/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "ccl4-1.38.0"
+installBiocDataPackage.sh "ccl4-1.40.0"
diff --git a/recipes/bioconductor-ccmap/meta.yaml b/recipes/bioconductor-ccmap/meta.yaml
index c073c4775e256..765e1c9c198f5 100644
--- a/recipes/bioconductor-ccmap/meta.yaml
+++ b/recipes/bioconductor-ccmap/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "ccmap" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: a1587c139647a148d00e216b0fc9653d
+  md5: d01f3e9dca6ce3403096f8fc00766755
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ccmap", max_pin="x.x") }}'
   noarch: generic
 # Suggests: crossmeta, knitr, rmarkdown, testthat, lydata
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-ccdata >=1.26.0,<1.27.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-ccdata >=1.28.0,<1.29.0'
     - r-base
     - 'r-biocmanager >=1.30.4'
     - 'r-data.table >=1.10.4'
@@ -31,8 +32,8 @@ requirements:
     - 'r-lsa >=0.73.1'
     - 'r-xgboost >=0.6.4'
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-ccdata >=1.26.0,<1.27.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-ccdata >=1.28.0,<1.29.0'
     - r-base
     - 'r-biocmanager >=1.30.4'
     - 'r-data.table >=1.10.4'
diff --git a/recipes/bioconductor-ccplotr/build.sh b/recipes/bioconductor-ccplotr/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-ccplotr/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-ccplotr/meta.yaml b/recipes/bioconductor-ccplotr/meta.yaml
new file mode 100644
index 0000000000000..550ccfa7556d0
--- /dev/null
+++ b/recipes/bioconductor-ccplotr/meta.yaml
@@ -0,0 +1,75 @@
+{% set version = "1.0.0" %}
+{% set name = "CCPlotR" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 913896518f29cd88d7ac9d57298f44de
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ccplotr", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0)
+requirements:
+  host:
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - r-base
+    - r-circlize
+    - r-dplyr
+    - r-forcats
+    - r-ggbump
+    - r-ggh4x
+    - r-ggplot2
+    - r-ggraph
+    - r-ggtext
+    - r-igraph
+    - r-patchwork
+    - r-plyr
+    - r-rcolorbrewer
+    - r-scales
+    - r-scatterpie
+    - r-stringr
+    - r-tibble
+    - r-tidyr
+    - r-viridis
+  run:
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - r-base
+    - r-circlize
+    - r-dplyr
+    - r-forcats
+    - r-ggbump
+    - r-ggh4x
+    - r-ggplot2
+    - r-ggraph
+    - r-ggtext
+    - r-igraph
+    - r-patchwork
+    - r-plyr
+    - r-rcolorbrewer
+    - r-scales
+    - r-scatterpie
+    - r-stringr
+    - r-tibble
+    - r-tidyr
+    - r-viridis
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'MIT + file LICENSE'
+  summary: 'Plots For Visualising Cell-Cell Interactions'
+  description: 'CCPlotR is an R package for visualising results from tools that predict cell-cell interactions from single-cell RNA-seq data. These plots are generic and can be used to visualise results from multiple tools such as Liana, CellPhoneDB, NATMI etc.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-ccpromise/build_failure.linux-64.yaml b/recipes/bioconductor-ccpromise/build_failure.linux-64.yaml
new file mode 100644
index 0000000000000..72fc0dc3a0c09
--- /dev/null
+++ b/recipes/bioconductor-ccpromise/build_failure.linux-64.yaml
@@ -0,0 +1,104 @@
+recipe_sha: 722fb617600a55303b535b784f5387ef700db6e8486e427c054d57fb5deff1b6  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+log: |-
+  conda-forge/linux-64 100%[2K[1A[2K[0G[] 5.1s
+  conda-forge/linux-64 100%[2K[1A[2K[0G[] 5.2s
+  conda-forge/linux-64 100%[2K[1A[2K[0G[] 5.3s
+  conda-forge/linux-64 100%[2K[1A[2K[0G[] 5.4s
+  [2K[1A[2K[0Gconda-forge/linux-64
+  [?25h[34mReloading output folder: [0m[34m/opt/conda/[0m[34mconda-bld[0m
+  [?25l[2K[0G[] 0.0s
+  [2K[1A[2K[0Gopt/conda/conda-bld/linux-64                        ??.?MB @  ??.?MB/s 0 failed  0.0s
+  opt/conda/conda-bld/noarch                         127.0 B @   2.2MB/s  0.0s
+  [?25h[34mReloading output folder: [0m[34m/opt/conda/[0m[34mconda-bld[0m
+  [?25l[2K[0G[] 0.0s
+  [2K[1A[2K[0Gopt/conda/conda-bld/linux-64                        ??.?MB @  ??.?MB/s 0 failed  0.0s
+  opt/conda/conda-bld/noarch                         127.0 B @   2.1MB/s  0.0s
+  [?25hMamba failed to solve:
+   - r-base 4.3.*
+   - r-ccp
+   - bioconductor-biobase >=2.62.0,<2.63.0
+   - bioconductor-gseabase >=1.64.0,<1.65.0
+   - bioconductor-promise >=1.54.0,<1.55.0
+
+  with channels:
+   - file:///opt/host-conda-bld
+   - conda-forge
+   - bioconda
+   - defaults
+
+  The reported errors are:
+  - Encountered problems while solving:
+  -   - nothing provides requested bioconductor-promise >=1.54.0,<1.55.0
+  -
+
+  Leaving build/test directories:
+    Work:
+   /opt/conda/conda-bld/work
+    Test:
+   /opt/conda/conda-bld/test_tmp
+  Leaving build/test environments:
+    Test:
+  source activate  /opt/conda/conda-bld/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl
+    Build:
+  source activate  /opt/conda/conda-bld/_build_env
+
+
+  Traceback (most recent call last):
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 141, in mamba_get_install_actions
+      solution = solver.solve_for_action(_specs, prefix)
+    File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 244, in solve_for_action
+      t = self.solve(specs)
+    File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 234, in solve
+      raise RuntimeError("Solver could not find solution."  error_string)
+  RuntimeError: Solver could not find solution.Mamba failed to solve:
+   - r-base 4.3.*
+   - r-ccp
+   - bioconductor-biobase >=2.62.0,<2.63.0
+   - bioconductor-gseabase >=1.64.0,<1.65.0
+   - bioconductor-promise >=1.54.0,<1.55.0
+
+  with channels:
+   - file:///opt/host-conda-bld
+   - conda-forge
+   - bioconda
+   - defaults
+
+  The reported errors are:
+  - Encountered problems while solving:
+  -   - nothing provides requested bioconductor-promise >=1.54.0,<1.55.0
+  -
+
+  During handling of the above exception, another exception occurred:
+
+  Traceback (most recent call last):
+    File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
+      sys.exit(main())
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
+      call_conda_build(action, config)
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
+      result = api.build(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
+      return build_tree(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
+      packages_from_this = build(metadata, stats,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2038, in build
+      output_metas = expand_outputs([(m, need_source_download, need_reparse_in_env)])
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 787, in expand_outputs
+      for (output_dict, m) in deepcopy(_m).get_output_metadata_set(permit_unsatisfiable_variants=False):
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/metadata.py", line 2524, in get_output_metadata_set
+      conda_packages = finalize_outputs_pass(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/metadata.py", line 884, in finalize_outputs_pass
+      fm = finalize_metadata(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 547, in finalize_metadata
+      build_unsat, host_unsat = add_upstream_pins(m,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 409, in add_upstream_pins
+      host_deps, host_unsat, extra_run_specs_from_host = _read_upstream_pin_files(m, 'host',
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 374, in _read_upstream_pin_files
+      deps, actions, unsat = get_env_dependencies(m, env, m.config.variant,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 131, in get_env_dependencies
+      actions = environ.get_install_actions(tmpdir, tuple(dependencies), env,
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 150, in mamba_get_install_actions
+      raise err
+  conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("bioconductor-promise[version='>=1.54.0,<1.55.0']")}
+# Last 100 lines of the build log.
diff --git a/recipes/bioconductor-ccpromise/meta.yaml b/recipes/bioconductor-ccpromise/meta.yaml
index f24d2e72bf027..a9de2cd528f55 100644
--- a/recipes/bioconductor-ccpromise/meta.yaml
+++ b/recipes/bioconductor-ccpromise/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "CCPROMISE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1efc8cd0ffc5444554a53bb13b32d2f4
+  md5: 1b85c7bbed3be474abf4e4591882abdf
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ccpromise", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-promise >=1.52.0,<1.53.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-promise >=1.54.0,<1.55.0'
     - r-base
     - r-ccp
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-promise >=1.52.0,<1.53.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-promise >=1.54.0,<1.55.0'
     - r-base
     - r-ccp
 test:
diff --git a/recipes/bioconductor-cctutorial/meta.yaml b/recipes/bioconductor-cctutorial/meta.yaml
index a679a121002ad..ba960ac374091 100644
--- a/recipes/bioconductor-cctutorial/meta.yaml
+++ b/recipes/bioconductor-cctutorial/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "ccTutorial" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6515deef368eb06b2f0aabaa069b3f63
+  md5: 20af731ec83a03f12ec5d87060f5d168
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cctutorial", max_pin="x.x") }}'
   noarch: generic
 # Suggests: biomaRt, Biobase(>= 2.5.5), xtable
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-ringo >=1.64.0,<1.65.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-ringo >=1.66.0,<1.67.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-ringo >=1.64.0,<1.65.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-ringo >=1.66.0,<1.67.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-cctutorial/post-link.sh b/recipes/bioconductor-cctutorial/post-link.sh
index b0c9b061fbc1f..3acf97540ef0e 100644
--- a/recipes/bioconductor-cctutorial/post-link.sh
+++ b/recipes/bioconductor-cctutorial/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "cctutorial-1.38.0"
+installBiocDataPackage.sh "cctutorial-1.40.0"
diff --git a/recipes/bioconductor-cdi/build.sh b/recipes/bioconductor-cdi/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-cdi/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-cdi/meta.yaml b/recipes/bioconductor-cdi/meta.yaml
new file mode 100644
index 0000000000000..10184abeabdbc
--- /dev/null
+++ b/recipes/bioconductor-cdi/meta.yaml
@@ -0,0 +1,55 @@
+{% set version = "1.0.2" %}
+{% set name = "CDI" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 64ebd520b0ba4613c3bddf06bb82dbc0
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cdi", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: knitr, rmarkdown, RUnit, BiocGenerics, magick, BiocStyle
+requirements:
+  host:
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-ggplot2
+    - r-ggsci
+    - r-matrixstats
+    - r-reshape2
+    - r-seurat
+    - r-seuratobject
+  run:
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-ggplot2
+    - r-ggsci
+    - r-matrixstats
+    - r-reshape2
+    - r-seurat
+    - r-seuratobject
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'GPL-3 + file LICENSE'
+  summary: 'Clustering Deviation Index (CDI)'
+  description: 'Single-cell RNA-sequencing (scRNA-seq) is widely used to explore cellular variation. The analysis of scRNA-seq data often starts from clustering cells into subpopulations. This initial step has a high impact on downstream analyses, and hence it is important to be accurate. However, there have not been unsupervised metric designed for scRNA-seq to evaluate clustering performance. Hence, we propose clustering deviation index (CDI), an unsupervised metric based on the modeling of scRNA-seq UMI counts to evaluate clustering of cells.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-celaref/meta.yaml b/recipes/bioconductor-celaref/meta.yaml
index 58aa2360a02dc..f3530a6b4cb5d 100644
--- a/recipes/bioconductor-celaref/meta.yaml
+++ b/recipes/bioconductor-celaref/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "celaref" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d4e594ba701e701ca005234d6224c518
+  md5: 8c168c1e505d63f6372d6baac7051a06
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-celaref", max_pin="x.x") }}'
   noarch: generic
 # Suggests: limma, parallel, knitr, rmarkdown, ExperimentHub, testthat
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-mast >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-mast >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -35,11 +36,11 @@ requirements:
     - r-rlang
     - r-tibble
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-mast >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-mast >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-celarefdata/meta.yaml b/recipes/bioconductor-celarefdata/meta.yaml
index 95c7c8450dbb2..5babbe3604e80 100644
--- a/recipes/bioconductor-celarefdata/meta.yaml
+++ b/recipes/bioconductor-celarefdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "celarefData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: eb23383ea6cb3e84ef6c66f0617cc69e
+  md5: 6864c27f1d574314fe10612b37f6c433
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-celarefdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ExperimentHub, knitr, rmarkdown
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-celarefdata/post-link.sh b/recipes/bioconductor-celarefdata/post-link.sh
index f4fd72ae7f3c6..da558cc839610 100644
--- a/recipes/bioconductor-celarefdata/post-link.sh
+++ b/recipes/bioconductor-celarefdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "celarefdata-1.18.0"
+installBiocDataPackage.sh "celarefdata-1.20.0"
diff --git a/recipes/bioconductor-celda/meta.yaml b/recipes/bioconductor-celda/meta.yaml
index c6993b5108ae5..921775f6f1896 100644
--- a/recipes/bioconductor-celda/meta.yaml
+++ b/recipes/bioconductor-celda/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.1" %}
+{% set version = "1.18.1" %}
 {% set name = "celda" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 7f8c768ce0dd749d8f815232bfe0977e
+  md5: 5b60cdee9ee9cbb13f4af0a40abdd177
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-celda", max_pin="x.x") }}'
 # Suggests: testthat, knitr, roxygen2, rmarkdown, biomaRt, covr, BiocManager, BiocStyle, TENxPBMCData, singleCellTK, M3DExampleData
 requirements:
   host:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-data.table
@@ -37,11 +38,11 @@ requirements:
     - r-foreach
     - r-ggplot2
     - r-ggrepel
+    - r-gridextra
     - r-gtable
     - r-matrix
     - r-matrixstats
     - r-mcmcprecision
-    - r-multipanelfigure
     - r-plyr
     - r-rcolorbrewer
     - r-rcpp
@@ -55,13 +56,13 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-data.table
@@ -72,11 +73,11 @@ requirements:
     - r-foreach
     - r-ggplot2
     - r-ggrepel
+    - r-gridextra
     - r-gtable
     - r-matrix
     - r-matrixstats
     - r-mcmcprecision
-    - r-multipanelfigure
     - r-plyr
     - r-rcolorbrewer
     - r-rcpp
diff --git a/recipes/bioconductor-celegans.db/meta.yaml b/recipes/bioconductor-celegans.db/meta.yaml
index 6dc9527545231..ea39dc2bada5e 100644
--- a/recipes/bioconductor-celegans.db/meta.yaml
+++ b/recipes/bioconductor-celegans.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "celegans.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 3cfa9df5a81ef538a890ed8c5d5a98ad
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-celegans.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.ce.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.ce.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.ce.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.ce.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-celeganscdf/meta.yaml b/recipes/bioconductor-celeganscdf/meta.yaml
index eea808835386d..3e1337bd905c5 100644
--- a/recipes/bioconductor-celeganscdf/meta.yaml
+++ b/recipes/bioconductor-celeganscdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "celeganscdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 1098cd99bfc5000bf9858e4a3acaf452
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-celeganscdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-celegansprobe/meta.yaml b/recipes/bioconductor-celegansprobe/meta.yaml
index eed0867c6997e..b1c063a28735f 100644
--- a/recipes/bioconductor-celegansprobe/meta.yaml
+++ b/recipes/bioconductor-celegansprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "celegansprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 7454bba10ff2dd7c03bfe0f9d450f148
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-celegansprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-cellarepertorium/meta.yaml b/recipes/bioconductor-cellarepertorium/meta.yaml
index d3550262c3003..26cde2ad158a4 100644
--- a/recipes/bioconductor-cellarepertorium/meta.yaml
+++ b/recipes/bioconductor-cellarepertorium/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "CellaRepertorium" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 51d58a44ea2047858aa0a1c0453290d6
+  md5: eceb5905cee5e0f9b9ba1ea47db2f1d3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cellarepertorium", max_pin="x.x") }}'
 # Suggests: testthat, readr, knitr, rmarkdown, ggplot2, BiocStyle, ggdendro, broom, lme4, RColorBrewer, SingleCellExperiment, scater, broom.mixed, cowplot, igraph, ggraph
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-forcats
@@ -40,9 +41,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-forcats
diff --git a/recipes/bioconductor-cellbarcode/meta.yaml b/recipes/bioconductor-cellbarcode/meta.yaml
index c412436d62627..27da6a1d0c2b9 100644
--- a/recipes/bioconductor-cellbarcode/meta.yaml
+++ b/recipes/bioconductor-cellbarcode/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "CellBarcode" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7b1eac1414aa90b4f31efa4acfbed68a
+  md5: d219d9d5c998fda5f5c02f817361c56a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cellbarcode", max_pin="x.x") }}'
 # Suggests: BiocStyle, testthat (>= 3.0.0), knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-bh
     - r-ckmeans.1d.dp
@@ -38,10 +39,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-bh
     - r-ckmeans.1d.dp
@@ -64,6 +65,6 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: 'MIT + file LICENSE'
   summary: 'Cellular DNA Barcode Analysis toolkit'
-  description: 'This package performs Cellular DNA Barcode (genetic lineage tracing) analysis. The package can handle all kinds of DNA barcodes, as long as the barcode within a single sequencing read and has a pattern which can be matched by a regular expression. This package can handle barcode with flexible length, with or without UMI (unique molecular identifier). This tool also can be used for pre-processing of some amplicon sequencing such as CRISPR gRNA screening, immune repertoire sequencing and meta genome data.'
+  description: 'The package CellBarcode performs Cellular DNA Barcode analysis. It can handle all kinds of DNA barcodes, as long as the barcode is within a single sequencing read and has a pattern that can be matched by a regular expression. \code{CellBarcode} can handle barcodes with flexible lengths, with or without UMI (unique molecular identifier). This tool also can be used for pre-processing some amplicon data such as CRISPR gRNA screening, immune repertoire sequencing, and metagenome data.'
   license_file: LICENSE
 
diff --git a/recipes/bioconductor-cellbaser/meta.yaml b/recipes/bioconductor-cellbaser/meta.yaml
index bb9f42a99f6bc..a80228b09d7cc 100644
--- a/recipes/bioconductor-cellbaser/meta.yaml
+++ b/recipes/bioconductor-cellbaser/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "cellbaseR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: dc80944f26d7d766c213f9330e8093ad
+  md5: 1540f788e9e1fba133da3a369fe2c8b4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cellbaser", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, Gviz, VariantAnnotation
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-data.table
     - r-doparallel
@@ -33,8 +34,8 @@ requirements:
     - r-r.utils
     - r-tidyr
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-data.table
     - r-doparallel
diff --git a/recipes/bioconductor-cellbench/meta.yaml b/recipes/bioconductor-cellbench/meta.yaml
index 18127f02e607d..6dbd1f801f5e5 100644
--- a/recipes/bioconductor-cellbench/meta.yaml
+++ b/recipes/bioconductor-cellbench/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "CellBench" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 55a020a53f4d16c4df41022b0287f5dd
+  md5: 21b854517881e111491fd4b6dba0857c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cellbench", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, covr, knitr, rmarkdown, testthat, limma, ggplot2
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-assertthat
     - r-base
     - r-dplyr
@@ -39,10 +40,10 @@ requirements:
     - r-tidyr
     - r-tidyselect
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-assertthat
     - r-base
     - r-dplyr
diff --git a/recipes/bioconductor-celldex/meta.yaml b/recipes/bioconductor-celldex/meta.yaml
index 68406f4d3d174..36ae84f27c872 100644
--- a/recipes/bioconductor-celldex/meta.yaml
+++ b/recipes/bioconductor-celldex/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.1" %}
+{% set version = "1.12.0" %}
 {% set name = "celldex" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: fef4f15bc2e0a7427627cf1cd7d505dc
+  md5: 62419c915beb91f7c228e1a125df68f8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-celldex", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, BiocStyle, DT, ensembldb
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-celldex/post-link.sh b/recipes/bioconductor-celldex/post-link.sh
index a789c0707212f..d36c9de2e3d47 100644
--- a/recipes/bioconductor-celldex/post-link.sh
+++ b/recipes/bioconductor-celldex/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "celldex-1.10.1"
+installBiocDataPackage.sh "celldex-1.12.0"
diff --git a/recipes/bioconductor-cellhashr/meta.yaml b/recipes/bioconductor-cellhashr/meta.yaml
new file mode 100644
index 0000000000000..86c58266837e7
--- /dev/null
+++ b/recipes/bioconductor-cellhashr/meta.yaml
@@ -0,0 +1,82 @@
+{% set version = "1.04" %}
+{% set sha256 = "a017cf985e78c39c899c5e2d43a7a1ff940f61c79145b6c4b1112e9bf8433de1" %}
+
+package:
+  name: bioconductor-cellhashr
+  version: {{version}}
+
+source:
+  url: https://github.com/BimberLab/cellhashR/archive/refs/tags/{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  noarch: generic
+  script: R CMD INSTALL --build .
+  run_exports:
+    - {{ pin_subpackage('bioconductor-cellhashr', max_pin="x") }}
+  rpaths:
+    - lib/R/lib/
+    - lib/
+
+requirements:
+  host:
+    - r-base
+    - r-essentials
+    - r-devtools
+    - r-rcpp
+    - r-rcpparmadillo
+    - r-rcppeigen
+    - r-rcppparallel
+    - r-rcppprogress
+    - bioconductor-preprocesscore
+    - r-pdftools
+    - bioconductor-demuxmix
+    - r-magick
+    - bioconductor-s4vectors
+    - bioconductor-dropletutils
+    - bioconductor-singlecellexperiment
+    - r-biocmanager
+    - r-seurat
+    - r-rmdformats
+    - r-ggforce
+    - r-reticulate
+    - r-ggextra
+    - r-ggthemes
+    - r-patchwork
+    - r-egg
+    - bioconductor-nempi
+  run:
+    - r-base
+    - r-essentials
+    - r-devtools
+    - r-rcpp
+    - r-rcpparmadillo
+    - r-rcppeigen
+    - r-rcppparallel
+    - r-rcppprogress
+    - bioconductor-preprocesscore
+    - bioconductor-dropletutils
+    - bioconductor-demuxmix
+    - r-seurat
+    - r-seuratobject
+    - r-rmdformats
+    - r-ggforce
+    - r-reticulate
+    - r-ggextra
+    - r-ggthemes
+    - r-patchwork
+    - r-egg
+    - bioconductor-nempi
+
+test:
+  commands:
+    - $R -e "library('cellhashR')"           # [not win]
+    - "\"%R%\" -e \"library('cellhashR')\""  # [win]
+
+about:
+  home: https://github.com/BimberLab/cellhashR
+  license: MIT
+  license_family: MIT
+  summary: "An R package designed to demultiplex cell hashing data.\n    More information in https://bimberlab.github.io/cellhashR/Lab B (2024). \n   cellhashR: A Package for Demultiplexing Cell Hashing Data.\n"
+  dev_url: https://github.com/BimberLab/cellhashR
diff --git a/recipes/bioconductor-cellhts2/meta.yaml b/recipes/bioconductor-cellhts2/meta.yaml
index 187d6f7e88090..9ea087124a5a1 100644
--- a/recipes/bioconductor-cellhts2/meta.yaml
+++ b/recipes/bioconductor-cellhts2/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.64.0" %}
+{% set version = "2.66.0" %}
 {% set name = "cellHTS2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5ba5f251e1fea747094ba827c4bd82eb
+  md5: 6f9dfcbf4583db914d89c9310e207c02
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cellhts2", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ggplot2
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-category >=2.66.0,<2.67.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-splots >=1.66.0,<1.67.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-category >=2.68.0,<2.69.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-splots >=1.68.0,<1.69.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-base
     - r-hwriter
     - r-locfit
     - r-rcolorbrewer
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-category >=2.66.0,<2.67.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-splots >=1.66.0,<1.67.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-category >=2.68.0,<2.69.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-splots >=1.68.0,<1.69.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-base
     - r-hwriter
     - r-locfit
diff --git a/recipes/bioconductor-cellid/meta.yaml b/recipes/bioconductor-cellid/meta.yaml
index 656b75d49abd3..7aff6e471d46e 100644
--- a/recipes/bioconductor-cellid/meta.yaml
+++ b/recipes/bioconductor-cellid/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.1" %}
+{% set version = "1.10.1" %}
 {% set name = "CelliD" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 65cfdcb7f5d87427061399fc6603eeea
+  md5: 91ef83db3f348575f3b90cf4c3753806
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cellid", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, BiocStyle, testthat, tidyverse, ggpubr, destiny, ggrepel
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-fastmatch
@@ -45,11 +46,11 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-fastmatch
diff --git a/recipes/bioconductor-cellity/meta.yaml b/recipes/bioconductor-cellity/meta.yaml
index c5cf38ca92df6..3f533b5866143 100644
--- a/recipes/bioconductor-cellity/meta.yaml
+++ b/recipes/bioconductor-cellity/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "cellity" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: aadb0954509cd1a297ab1adf15449b30
+  md5: c6680442e176cef832fc19d82d49815a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cellity", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, caret, knitr, testthat, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - r-e1071
     - r-ggplot2
     - r-mvoutlier
     - r-robustbase
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - r-e1071
     - r-ggplot2
diff --git a/recipes/bioconductor-cellmapper/meta.yaml b/recipes/bioconductor-cellmapper/meta.yaml
index 968c4f0352fd2..6cfb167524086 100644
--- a/recipes/bioconductor-cellmapper/meta.yaml
+++ b/recipes/bioconductor-cellmapper/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "CellMapper" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 93d1fccce26fd0fb0d31bc0a89fdbb95
+  md5: ca94af55dbc55bb2bf40c69f4965b553
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cellmapper", max_pin="x.x") }}'
   noarch: generic
 # Suggests: CellMapperData, Biobase, HumanAffyData, ALL, BiocStyle, ExperimentHub
 requirements:
   host:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-cellmapperdata/meta.yaml b/recipes/bioconductor-cellmapperdata/meta.yaml
index 45e0955d8f3f6..694aa257b25ef 100644
--- a/recipes/bioconductor-cellmapperdata/meta.yaml
+++ b/recipes/bioconductor-cellmapperdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "CellMapperData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b9d311ad83cec787788c967e93cb290b
+  md5: 5db37729dd49f26b6cba9ff4aff80b1d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cellmapperdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle
 requirements:
   host:
-    - 'bioconductor-cellmapper >=1.26.0,<1.27.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-cellmapper >=1.28.0,<1.29.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-cellmapper >=1.26.0,<1.27.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-cellmapper >=1.28.0,<1.29.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-cellmapperdata/post-link.sh b/recipes/bioconductor-cellmapperdata/post-link.sh
index 7963c56d1b0c3..a5db39ff29df7 100644
--- a/recipes/bioconductor-cellmapperdata/post-link.sh
+++ b/recipes/bioconductor-cellmapperdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "cellmapperdata-1.26.0"
+installBiocDataPackage.sh "cellmapperdata-1.28.0"
diff --git a/recipes/bioconductor-cellmigration/meta.yaml b/recipes/bioconductor-cellmigration/meta.yaml
index e7215a9ecab0c..c4b413d5dc107 100644
--- a/recipes/bioconductor-cellmigration/meta.yaml
+++ b/recipes/bioconductor-cellmigration/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "cellmigRation" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1f8e86c8cdb38e015e3a1b5927b834cf
+  md5: 61fc4a74a41e132fc3b760bc444ee5d4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cellmigration", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, dplyr, ggplot2, RUnit, BiocGenerics, BiocManager, kableExtra, rgl
 requirements:
diff --git a/recipes/bioconductor-cellmixs/meta.yaml b/recipes/bioconductor-cellmixs/meta.yaml
index d088721b9191d..fbf1f4f06dd59 100644
--- a/recipes/bioconductor-cellmixs/meta.yaml
+++ b/recipes/bioconductor-cellmixs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "CellMixS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9882807e195ad678d59c5ef5704bd943
+  md5: 67910c3dc01e01dc6be6ca3bb76d7794
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cellmixs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, limma, Rtsne
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cowplot
     - r-dplyr
@@ -38,12 +39,12 @@ requirements:
     - r-tidyr
     - r-viridis
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cowplot
     - r-dplyr
diff --git a/recipes/bioconductor-cellnoptr/meta.yaml b/recipes/bioconductor-cellnoptr/meta.yaml
index 87c2f623319aa..c4a20e64f1c8a 100644
--- a/recipes/bioconductor-cellnoptr/meta.yaml
+++ b/recipes/bioconductor-cellnoptr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "CellNOptR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 09bf4fd709ce09ae2e28a60dbe412832
+  md5: 22ea1e446726e7b83f26f1f5f614d74f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cellnoptr", max_pin="x.x") }}'
 # Suggests: data.table, dplyr, tidyr, readr, knitr, RUnit, BiocGenerics,
 # SystemRequirements: Graphviz version >= 2.2
 requirements:
   host:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-ggplot2
     - r-igraph
@@ -36,9 +37,9 @@ requirements:
     - liblapack
     - 'graphviz >=2.2'
   run:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-ggplot2
     - r-igraph
diff --git a/recipes/bioconductor-cellscore/meta.yaml b/recipes/bioconductor-cellscore/meta.yaml
index 089bf0bf98800..91e7ab9ca06b4 100644
--- a/recipes/bioconductor-cellscore/meta.yaml
+++ b/recipes/bioconductor-cellscore/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "CellScore" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: afb6d50cd4f4d6af1da07504b10d0650
+  md5: c842a56a0f5067b891a0ab7c9f9b1e21
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cellscore", max_pin="x.x") }}'
   noarch: generic
-# Suggests: hgu133plus2CellScore, knitr
+# Suggests: hgu133plus2CellScore, knitr, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-gplots >=3.0.1'
     - 'r-lsa >=0.73.1'
     - 'r-rcolorbrewer >=1.1-2'
     - 'r-squash >=1.0.8'
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-gplots >=3.0.1'
     - 'r-lsa >=0.73.1'
diff --git a/recipes/bioconductor-celltrails/meta.yaml b/recipes/bioconductor-celltrails/meta.yaml
index ebd283155d0a6..81e50c10fe30a 100644
--- a/recipes/bioconductor-celltrails/meta.yaml
+++ b/recipes/bioconductor-celltrails/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "CellTrails" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5a9fc651c79c87dc1f49947350f660f6
+  md5: 87b23b653d772f9b436b655e5e8af5ae
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-celltrails", max_pin="x.x") }}'
   noarch: generic
 # Suggests: AnnotationDbi, destiny, RUnit, scater, scran, knitr, org.Mm.eg.db, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cba
     - r-dendextend
@@ -38,10 +39,10 @@ requirements:
     - r-reshape2
     - r-rtsne
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cba
     - r-dendextend
diff --git a/recipes/bioconductor-cellxgenedp/meta.yaml b/recipes/bioconductor-cellxgenedp/meta.yaml
index 331dfc1cac7e3..52a8b40eb76cb 100644
--- a/recipes/bioconductor-cellxgenedp/meta.yaml
+++ b/recipes/bioconductor-cellxgenedp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.1" %}
 {% set name = "cellxgenedp" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: eadf41eb26e97613a500fa73807a60f5
+  md5: dc1730a545f49b0b8c14991289f29a6b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cellxgenedp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: zellkonverter, SingleCellExperiment, HDF5Array, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), mockery
 requirements:
diff --git a/recipes/bioconductor-cemitool/meta.yaml b/recipes/bioconductor-cemitool/meta.yaml
index 911aa97898ae0..0b2b39b75ff26 100644
--- a/recipes/bioconductor-cemitool/meta.yaml
+++ b/recipes/bioconductor-cemitool/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "CEMiTool" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 513c292bb3582042a443b20930d66aec
+  md5: df823e2602a3b994f889644e39e0eb8f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cemitool", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocManager
 requirements:
   host:
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
     - r-base
     - 'r-data.table >=1.9.4'
     - r-dplyr
@@ -48,8 +49,8 @@ requirements:
     - r-stringr
     - r-wgcna
   run:
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
     - r-base
     - 'r-data.table >=1.9.4'
     - r-dplyr
diff --git a/recipes/bioconductor-censcyt/meta.yaml b/recipes/bioconductor-censcyt/meta.yaml
index 184a5c03e98bd..5ed00b98241a1 100644
--- a/recipes/bioconductor-censcyt/meta.yaml
+++ b/recipes/bioconductor-censcyt/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "censcyt" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 25c65055473214240eb1102ffa7b39b1
+  md5: e5f2a60dcafc6d878e1e97e85768f078
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-censcyt", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, ggplot2
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-diffcyt >=1.20.0,<1.21.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-diffcyt >=1.22.0,<1.23.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-broom.mixed
     - r-dirmult
@@ -43,11 +44,11 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-diffcyt >=1.20.0,<1.21.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-diffcyt >=1.22.0,<1.23.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-broom.mixed
     - r-dirmult
diff --git a/recipes/bioconductor-cepo/build_failure.linux-64.yaml b/recipes/bioconductor-cepo/build_failure.linux-64.yaml
new file mode 100644
index 0000000000000..5ac0014c0d22a
--- /dev/null
+++ b/recipes/bioconductor-cepo/build_failure.linux-64.yaml
@@ -0,0 +1,104 @@
+recipe_sha: b904f129759930c0079c8f1858105b52b54ce300d7c837bd4c417f305be8d2d0  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+log: |2-
+      yaml:                              0.2.5-h7f98852_2           conda-forge
+      yq:                                3.2.3-pyhd8ed1ab_0         conda-forge
+      zlib:                              1.2.13-hd590300_5          conda-forge
+      zstd:                              1.5.5-hfc55251_0           conda-forge
+
+  Preparing transaction: ...working... done
+  Verifying transaction: ...working... done
+  Executing transaction: ...working... done
+  [34mReloading output folder: [0m[34m/opt/conda/[0m[34mconda-bld[0m
+  [?25l[2K[0G[] 0.0s
+  [2K[1A[2K[0Gopt/conda/conda-bld/linux-64                       129.0 B @   2.1MB/s  0.0s
+  opt/conda/conda-bld/noarch                         127.0 B @   2.4MB/s  0.0s
+  [?25h[34mReloading output folder: [0m[34m/opt/conda/[0m[34mconda-bld[0m
+  [?25l[2K[0G[] 0.0s
+  [2K[1A[2K[0Gopt/conda/conda-bld/linux-64                       129.0 B @   2.0MB/s  0.0s
+  opt/conda/conda-bld/noarch                         127.0 B @   2.9MB/s  0.0s
+  [?25h
+  ## Package Plan ##
+
+    environment location: /opt/conda/conda-bld/bioconductor-cepo_1703278295981/_build_env
+
+
+  Source cache directory is: /opt/conda/conda-bld/src_cache
+  INFO:conda_build.source:Source cache directory is: /opt/conda/conda-bld/src_cache
+  Downloading source to cache: Cepo_1.8.0_9eee9f73ec.tar.gz
+  INFO:conda_build.source:Downloading source to cache: Cepo_1.8.0_9eee9f73ec.tar.gz
+  Downloading https://bioconductor.org/packages/3.18/bioc/src/contrib/Cepo_1.8.0.tar.gz
+  INFO:conda_build.source:Downloading https://bioconductor.org/packages/3.18/bioc/src/contrib/Cepo_1.8.0.tar.gz
+  Success
+  INFO:conda_build.source:Success
+  Extracting download
+  source tree in: /opt/conda/conda-bld/bioconductor-cepo_1703278295981/work
+  export PREFIX=/opt/conda/conda-bld/bioconductor-cepo_1703278295981/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place
+  export BUILD_PREFIX=/opt/conda/conda-bld/bioconductor-cepo_1703278295981/_build_env
+  export SRC_DIR=/opt/conda/conda-bld/bioconductor-cepo_1703278295981/work
+  During startup - Warning message:
+  Setting LC_TIME failed, using "C"
+  * installing to library /opt/conda/conda-bld/bioconductor-cepo_1703278295981/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/R/library
+  * installing *source* package Cepo ...
+  ** using staged installation
+  ** R
+  ** data
+  ** inst
+  ** byte-compile and prepare package for lazy loading
+  During startup - Warning message:
+  Setting LC_TIME failed, using "C"
+  ** help
+  *** installing help indices
+  *** copying figures
+  ** building package indices
+  During startup - Warning message:
+  Setting LC_TIME failed, using "C"
+  ** installing vignettes
+  ** testing if installed package can be loaded from temporary location
+  During startup - Warning message:
+  Setting LC_TIME failed, using "C"
+  ** testing if installed package can be loaded from final location
+  During startup - Warning message:
+  Setting LC_TIME failed, using "C"
+  ** testing if installed package keeps a record of temporary installation path
+  * creating tarball
+  packaged installation of Cepo as Cepo_1.8.0_R_x86_64-conda-linux-gnu.tar.gz
+  * DONE (Cepo)
+
+  Resource usage statistics from building bioconductor-cepo:
+     Process count: 6
+     CPU time: Sys=0:00:02.4, User=0:00:20.2
+     Memory: 733.9M
+     Disk usage: 6.8K
+     Time elapsed: 0:00:27.8
+
+
+  Packaging bioconductor-cepo
+  INFO:conda_build.build:Packaging bioconductor-cepo
+  Packaging bioconductor-cepo-1.8.0-r43hdfd78af_0
+  INFO:conda_build.build:Packaging bioconductor-cepo-1.8.0-r43hdfd78af_0
+  number of files: 30
+  Fixing permissions
+  Traceback (most recent call last):
+    File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
+      sys.exit(main())
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
+      call_conda_build(action, config)
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
+      result = api.build(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
+      return build_tree(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
+      packages_from_this = build(metadata, stats,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2358, in build
+      newly_built_packages = bundlers[pkg_type](output_d, m, env, stats)
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 1672, in bundle_conda
+      output['checksums'] = create_info_files(metadata, replacements, files, prefix=metadata.config.host_prefix)
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 1272, in create_info_files
+      copy_license(m)
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 762, in copy_license
+      generic_copy(m, "license", "license_file")
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 800, in generic_copy
+      raise ValueError(
+  ValueError: License file given in about/license_file (/opt/recipe/LICENSE) does not exist in source root dir or in recipe root dir (with meta.yaml)
+# Last 100 lines of the build log.
diff --git a/recipes/bioconductor-cepo/meta.yaml b/recipes/bioconductor-cepo/meta.yaml
index b7de86cbeccc6..3e7d32bc32c6d 100644
--- a/recipes/bioconductor-cepo/meta.yaml
+++ b/recipes/bioconductor-cepo/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "Cepo" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: aa0bd806c84f9024c965b3de7bc6652b
+  md5: 9eee9f73ecd4d7dd782d14db0f60bd1f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cepo", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, testthat, covr, UpSetR, scater, scMerge, fgsea, escape, pheatmap, patchwork
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -36,14 +37,14 @@ requirements:
     - r-reshape2
     - r-rlang
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -58,4 +59,5 @@ about:
   license: 'MIT + file LICENSE'
   summary: 'Cepo for the identification of differentially stable genes'
   description: 'Defining the identity of a cell is fundamental to understand the heterogeneity of cells to various environmental signals and perturbations. We present Cepo, a new method to explore cell identities from single-cell RNA-sequencing data using differential stability as a new metric to define cell identity genes. Cepo computes cell-type specific gene statistics pertaining to differential stable gene expression.'
+  license_file: LICENSE
 
diff --git a/recipes/bioconductor-cernanetsim/meta.yaml b/recipes/bioconductor-cernanetsim/meta.yaml
index 49f97e8b5f8fe..06a85239a44fc 100644
--- a/recipes/bioconductor-cernanetsim/meta.yaml
+++ b/recipes/bioconductor-cernanetsim/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "ceRNAnetsim" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3bd2c6360a6a11df8ccce61557d105dd
+  md5: 7a406a65a3e7bad478149f1587317a79
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cernanetsim", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, png, rmarkdown, testthat, covr
 requirements:
diff --git a/recipes/bioconductor-cetf/meta.yaml b/recipes/bioconductor-cetf/meta.yaml
index 35bc561332f75..a5a4a5da234e4 100644
--- a/recipes/bioconductor-cetf/meta.yaml
+++ b/recipes/bioconductor-cetf/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "CeTF" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6e155847761cb9f297650b789c967ff7
+  md5: b79bf3680b81b7b6945eef89f6babfc1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cetf", max_pin="x.x") }}'
 # Suggests: airway, kableExtra, knitr, org.Hs.eg.db, rmarkdown, testthat
 # SystemRequirements: libcurl4-openssl-dev, libxml2-dev, libssl-dev, gfortran, build-essential, libz-dev, zlib1g-dev
 requirements:
   host:
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-rcy3 >=2.20.0,<2.21.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-rcy3 >=2.22.0,<2.23.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-dplyr
@@ -44,12 +45,12 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-rcy3 >=2.20.0,<2.21.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-rcy3 >=2.22.0,<2.23.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-dplyr
diff --git a/recipes/bioconductor-cexor/meta.yaml b/recipes/bioconductor-cexor/meta.yaml
index aac4f37c1f333..50afffdcd92be 100644
--- a/recipes/bioconductor-cexor/meta.yaml
+++ b/recipes/bioconductor-cexor/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "CexoR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 32ef736b70fcc811be756cbed73445c3
+  md5: 53f7febbb51a7f925322329e89a8d619
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cexor", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-genomation >=1.32.0,<1.33.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomation >=1.34.0,<1.35.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-idr
     - r-rcolorbrewer
   run:
-    - 'bioconductor-genomation >=1.32.0,<1.33.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomation >=1.34.0,<1.35.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-idr
     - r-rcolorbrewer
diff --git a/recipes/bioconductor-cfassay/meta.yaml b/recipes/bioconductor-cfassay/meta.yaml
index c8587570ddc98..96259a3f1aed1 100644
--- a/recipes/bioconductor-cfassay/meta.yaml
+++ b/recipes/bioconductor-cfassay/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "CFAssay" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3fbd8b4078901da0139a5fc27d56cda8
+  md5: 122c969248ffd92330d93a266db6cb3c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cfassay", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-cfdnakit/build.sh b/recipes/bioconductor-cfdnakit/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-cfdnakit/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-cfdnakit/meta.yaml b/recipes/bioconductor-cfdnakit/meta.yaml
new file mode 100644
index 0000000000000..b7735232ce60f
--- /dev/null
+++ b/recipes/bioconductor-cfdnakit/meta.yaml
@@ -0,0 +1,61 @@
+{% set version = "1.0.0" %}
+{% set name = "cfdnakit" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
+  md5: 967a84e96d20af4a0256e117afe272b7
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cfdnakit", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: rmarkdown, knitr, roxygen2, BiocStyle
+requirements:
+  host:
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-qdnaseq >=1.38.0,<1.39.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - r-base
+    - r-dplyr
+    - r-ggplot2
+    - r-magrittr
+    - r-pscbs
+    - r-rlang
+  run:
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-qdnaseq >=1.38.0,<1.39.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - r-base
+    - r-dplyr
+    - r-ggplot2
+    - r-magrittr
+    - r-pscbs
+    - r-rlang
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'Fragmen-length analysis package from high-throughput sequencing of cell-free DNA (cfDNA)'
+  description: 'This package provides basic functions for analyzing shallow whole-genome sequencing (~0.3X or more) of cell-free DNA (cfDNA). The package basically extracts the length of cfDNA fragments and aids the vistualization of fragment-length information. The package also extract fragment-length information per non-overlapping fixed-sized bins and used it for calculating ctDNA estimation score (CES).'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-cfdnapro/meta.yaml b/recipes/bioconductor-cfdnapro/meta.yaml
index 55bda26419c1f..1b8813dc37295 100644
--- a/recipes/bioconductor-cfdnapro/meta.yaml
+++ b/recipes/bioconductor-cfdnapro/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "cfDNAPro" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 80295d2e20980978b268c420ee6c5acd
+  md5: 377fb633e850fcef49fbe86f3c4d1505
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cfdnapro", max_pin="x.x") }}'
   noarch: generic
 # Suggests: scales, ggpubr, knitr (>= 1.23), rmarkdown (>= 1.14), devtools (>= 2.3.0), BiocStyle, testthat
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - 'bioconductor-bsgenome.hsapiens.ncbi.grch38 >=1.3.0,<1.4.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg38 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-plyranges >=1.20.0,<1.21.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - 'r-dplyr >=0.8.3'
     - 'r-ggplot2 >=3.2.1'
@@ -40,16 +41,16 @@ requirements:
     - 'r-stringr >=1.4.0'
     - r-tibble
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - 'bioconductor-bsgenome.hsapiens.ncbi.grch38 >=1.3.0,<1.4.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg38 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-plyranges >=1.20.0,<1.21.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - 'r-dplyr >=0.8.3'
     - 'r-ggplot2 >=3.2.1'
diff --git a/recipes/bioconductor-cftools/meta.yaml b/recipes/bioconductor-cftools/meta.yaml
index 325303e6f60fc..7ad4099a140e5 100644
--- a/recipes/bioconductor-cftools/meta.yaml
+++ b/recipes/bioconductor-cftools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "cfTools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fc30acea96850944e511ea4bbf58e266
+  md5: cf0f03a9654984b3214bcadac889fc28
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cftools", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-cftoolsdata >=1.0.0,<1.1.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-bh
     - r-r.utils
@@ -29,8 +31,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-cftoolsdata >=1.0.0,<1.1.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-bh
     - r-r.utils
diff --git a/recipes/bioconductor-cftoolsdata/meta.yaml b/recipes/bioconductor-cftoolsdata/meta.yaml
new file mode 100644
index 0000000000000..4150a2a029bdb
--- /dev/null
+++ b/recipes/bioconductor-cftoolsdata/meta.yaml
@@ -0,0 +1,41 @@
+{% set version = "1.0.0" %}
+{% set name = "cfToolsData" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 00bbf328a45fb8731b3c7262b3521e0b
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cftoolsdata", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, knitr, rmarkdown, ExperimentHubData, testthat (>= 3.0.0)
+requirements:
+  host:
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - r-base
+  run:
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - r-base
+    - curl
+    - 'bioconductor-data-packages >=20231203'
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/html/{{ name }}.html'
+  license: 'file LICENSE'
+  summary: 'ExperimentHub data for the cfTools package'
+  description: 'The cfToolsData package supplies the data for the cfTools package. It contains two pre-trained deep neural network (DNN) models for the cfSort function. Additionally, it includes the shape parameters of beta distribution characterizing methylation markers associated with four tumor types for the CancerDetector function, as well as the parameters characterizing methylation markers specific to 29 primary human tissue types for the cfDeconvolve function.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-cftoolsdata/post-link.sh b/recipes/bioconductor-cftoolsdata/post-link.sh
new file mode 100644
index 0000000000000..76ff4ad0b782b
--- /dev/null
+++ b/recipes/bioconductor-cftoolsdata/post-link.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+installBiocDataPackage.sh "cftoolsdata-1.0.0"
diff --git a/recipes/bioconductor-cftoolsdata/pre-unlink.sh b/recipes/bioconductor-cftoolsdata/pre-unlink.sh
new file mode 100644
index 0000000000000..d8e309e01fa6c
--- /dev/null
+++ b/recipes/bioconductor-cftoolsdata/pre-unlink.sh
@@ -0,0 +1 @@
+R CMD REMOVE --library=$PREFIX/lib/R/library/ cfToolsData
diff --git a/recipes/bioconductor-cgen/meta.yaml b/recipes/bioconductor-cgen/meta.yaml
index a45300a10267c..cc332a3a96b16 100644
--- a/recipes/bioconductor-cgen/meta.yaml
+++ b/recipes/bioconductor-cgen/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.36.1" %}
+{% set version = "3.38.0" %}
 {% set name = "CGEN" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0092d5b8a0127b2ad4b803fc41289f08
+  md5: e62dd5874cfcaab65414fff648106633
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cgen", max_pin="x.x") }}'
 # Suggests: cluster
 requirements:
   host:
diff --git a/recipes/bioconductor-cghbase/meta.yaml b/recipes/bioconductor-cghbase/meta.yaml
index d4196e9ebd2df..6a9c029f439be 100644
--- a/recipes/bioconductor-cghbase/meta.yaml
+++ b/recipes/bioconductor-cghbase/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.60.0" %}
+{% set version = "1.62.0" %}
 {% set name = "CGHbase" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4ac037567f6cec96bce84af4382d7481
+  md5: 806f73dc042c0bf46989606a4aa4dbe8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cghbase", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-cghcall/meta.yaml b/recipes/bioconductor-cghcall/meta.yaml
index 2ee30e29f42cf..0177f0dccb3bc 100644
--- a/recipes/bioconductor-cghcall/meta.yaml
+++ b/recipes/bioconductor-cghcall/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.62.0" %}
+{% set version = "2.64.0" %}
 {% set name = "CGHcall" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a593c642a5f01c37fd60caece6363f87
+  md5: 7a43fd6ae1e6c288b98abd2b8824fed4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cghcall", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-cghbase >=1.60.0,<1.61.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-cghbase >=1.62.0,<1.63.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
     - r-base
     - r-snowfall
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-cghbase >=1.60.0,<1.61.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-cghbase >=1.62.0,<1.63.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
     - r-base
     - r-snowfall
 test:
diff --git a/recipes/bioconductor-cghmcr/meta.yaml b/recipes/bioconductor-cghmcr/meta.yaml
index ebda3d6609810..ed85eb3edecc1 100644
--- a/recipes/bioconductor-cghmcr/meta.yaml
+++ b/recipes/bioconductor-cghmcr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.58.0" %}
+{% set version = "1.60.0" %}
 {% set name = "cghMCR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4df2110576ea48c62099f7eafb985866
+  md5: b3db4bfc3f23e690592a37414db360c9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cghmcr", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-cntools >=1.56.0,<1.57.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-cntools >=1.58.0,<1.59.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-cntools >=1.56.0,<1.57.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-cntools >=1.58.0,<1.59.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-cghnormaliter/meta.yaml b/recipes/bioconductor-cghnormaliter/meta.yaml
index b7cf959966a85..b09f4d2b885e1 100644
--- a/recipes/bioconductor-cghnormaliter/meta.yaml
+++ b/recipes/bioconductor-cghnormaliter/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.54.0" %}
+{% set version = "1.56.0" %}
 {% set name = "CGHnormaliter" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ab70a4d3f244ab250b735ad3b1fbbbd2
+  md5: 948d3af66840226e7095e46d281df177
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cghnormaliter", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-cghbase >=1.60.0,<1.61.0'
-    - 'bioconductor-cghcall >=2.62.0,<2.63.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-cghbase >=1.62.0,<1.63.0'
+    - 'bioconductor-cghcall >=2.64.0,<2.65.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-cghbase >=1.60.0,<1.61.0'
-    - 'bioconductor-cghcall >=2.62.0,<2.63.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-cghbase >=1.62.0,<1.63.0'
+    - 'bioconductor-cghcall >=2.64.0,<2.65.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-cghregions/meta.yaml b/recipes/bioconductor-cghregions/meta.yaml
index e3f1c469919d2..d10ed89bd1358 100644
--- a/recipes/bioconductor-cghregions/meta.yaml
+++ b/recipes/bioconductor-cghregions/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.58.0" %}
+{% set version = "1.60.0" %}
 {% set name = "CGHregions" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e445f33fe45b3f9773e5b433ab94c0aa
+  md5: 3ec8f1bb5db1987f92932d29a31d74fe
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cghregions", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-cghbase >=1.60.0,<1.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-cghbase >=1.62.0,<1.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-cghbase >=1.60.0,<1.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-cghbase >=1.62.0,<1.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-champdata/meta.yaml b/recipes/bioconductor-champdata/meta.yaml
index 0bb20b2c6c55e..7e32b96919117 100644
--- a/recipes/bioconductor-champdata/meta.yaml
+++ b/recipes/bioconductor-champdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.32.0" %}
+{% set version = "2.34.0" %}
 {% set name = "ChAMPdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cf36209a25e3dbc4c8098a3fcb3327df
+  md5: b12bfec01a1cfdd103bc0cb9bd44d4aa
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-champdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-champdata/post-link.sh b/recipes/bioconductor-champdata/post-link.sh
index 4d1b7c8156bb8..af3862f5f24b1 100644
--- a/recipes/bioconductor-champdata/post-link.sh
+++ b/recipes/bioconductor-champdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "champdata-2.32.0"
+installBiocDataPackage.sh "champdata-2.34.0"
diff --git a/recipes/bioconductor-chemminedrugs/meta.yaml b/recipes/bioconductor-chemminedrugs/meta.yaml
index dcf2b0360e313..97651c57e2bbe 100644
--- a/recipes/bioconductor-chemminedrugs/meta.yaml
+++ b/recipes/bioconductor-chemminedrugs/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.2" %}
 {% set name = "ChemmineDrugs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,25 +13,26 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 2a3646e5173e93080fb5b49564f5d545
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chemminedrugs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle,knitcitations,knitr
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-chemminer >=3.52.0,<3.53.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-chemminer >=3.54.0,<3.55.0'
     - r-base
     - r-rsqlite
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-chemminer >=3.52.0,<3.53.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-chemminer >=3.54.0,<3.55.0'
     - r-base
     - r-rsqlite
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-chemmineob/build.sh b/recipes/bioconductor-chemmineob/build.sh
index 9ee117c0e7115..ee892d72037fc 100644
--- a/recipes/bioconductor-chemmineob/build.sh
+++ b/recipes/bioconductor-chemmineob/build.sh
@@ -8,4 +8,4 @@ CXX=$CXX -I$PREFIX/include/openbabel3 -I$PREFIX/include/eigen3 -L$PREFIX/lib
 CXX98=$CXX
 CXX11=$CXX
 CXX14=$CXX -I$PREFIX/include/openbabel3 -I$PREFIX/include/eigen3 -L$PREFIX/lib" > ~/.R/Makevars
-$R CMD INSTALL --build .
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-chemmineob/meta.yaml b/recipes/bioconductor-chemmineob/meta.yaml
index 0b1c018320b76..e143fc83685a4 100644
--- a/recipes/bioconductor-chemmineob/meta.yaml
+++ b/recipes/bioconductor-chemmineob/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "ChemmineOB" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,7 +11,7 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5d721ca0fa36f8b42fecca0ab4f98910
+  md5: 5bd759ca398ffb70214a8076028bf0b2
   patches:
     - patch
 build:
@@ -19,12 +19,13 @@ build:
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chemmineob", max_pin="x.x") }}'
 # Suggests: ChemmineR, BiocStyle, knitr, knitrBootstrap, BiocManager, rmarkdown,RUnit
 # SystemRequirements: OpenBabel (>= 3.0.0) with headers (http://openbabel.org). Eigen3 with headers.
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-bh
     - 'r-rcpp >=0.11.0'
@@ -33,8 +34,8 @@ requirements:
     - openbabel >=3
     - eigen
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-bh
     - 'r-rcpp >=0.11.0'
diff --git a/recipes/bioconductor-chemminer/meta.yaml b/recipes/bioconductor-chemminer/meta.yaml
index 99ce170bcdabf..bd56196b89d1a 100644
--- a/recipes/bioconductor-chemminer/meta.yaml
+++ b/recipes/bioconductor-chemminer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.52.0" %}
+{% set version = "3.54.0" %}
 {% set name = "ChemmineR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 54601905e8a4a48d85b3c7a80f935eb5
+  md5: 8dd1886811bdc4ac23c24fad60a9b238
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chemminer", max_pin="x.x") }}'
 # Suggests: RSQLite, scatterplot3d, gplots, fmcsR, snow, RPostgreSQL, BiocStyle, knitr, knitcitations, knitrBootstrap, ChemmineDrugs, png,rmarkdown, BiocManager,bibtex
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-base64enc
     - r-bh
@@ -40,7 +41,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-base64enc
     - r-bh
@@ -69,6 +70,8 @@ about:
   summary: 'Cheminformatics Toolkit for R'
   description: 'ChemmineR is a cheminformatics package for analyzing drug-like small molecule data in R. Its latest version contains functions for efficient processing of large numbers of molecules, physicochemical/structural property predictions, structural similarity searching, classification and clustering of compound libraries with a wide spectrum of algorithms. In addition, it offers visualization functions for compound clustering results and chemical structures.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:chemminer
   parent_recipe:
diff --git a/recipes/bioconductor-chetah/meta.yaml b/recipes/bioconductor-chetah/meta.yaml
index d31c3271649f8..2dca0e66b8dbe 100644
--- a/recipes/bioconductor-chetah/meta.yaml
+++ b/recipes/bioconductor-chetah/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "CHETAH" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0312f98ec3d18db1839da7f6980cf4d6
+  md5: a6b920a4a3f3f931acb3cd950c7a74c3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chetah", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, Matrix, testthat, vdiffr
 requirements:
   host:
-    - 'bioconductor-biodist >=1.72.0,<1.73.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biodist >=1.74.0,<1.75.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-corrplot
     - r-cowplot
@@ -35,10 +36,10 @@ requirements:
     - r-reshape2
     - r-shiny
   run:
-    - 'bioconductor-biodist >=1.72.0,<1.73.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biodist >=1.74.0,<1.75.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-corrplot
     - r-cowplot
diff --git a/recipes/bioconductor-chic.data/meta.yaml b/recipes/bioconductor-chic.data/meta.yaml
index 4a8fcf87e3a4f..f99fd578b9c16 100644
--- a/recipes/bioconductor-chic.data/meta.yaml
+++ b/recipes/bioconductor-chic.data/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "ChIC.data" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c846395a170d9e1601f20f2250b5b3e2
+  md5: 34b50ea53e6b5c982dc044addc68c33b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chic.data", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-genomeintervals >=1.56.0,<1.57.0'
+    - 'bioconductor-genomeintervals >=1.58.0,<1.59.0'
     - r-base
     - 'r-caret >=6.0-78'
     - r-randomforest
   run:
-    - 'bioconductor-genomeintervals >=1.56.0,<1.57.0'
+    - 'bioconductor-genomeintervals >=1.58.0,<1.59.0'
     - r-base
     - 'r-caret >=6.0-78'
     - r-randomforest
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-chic.data/post-link.sh b/recipes/bioconductor-chic.data/post-link.sh
index 52ba42a28c315..7b754bd9c9d5b 100644
--- a/recipes/bioconductor-chic.data/post-link.sh
+++ b/recipes/bioconductor-chic.data/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "chic.data-1.20.0"
+installBiocDataPackage.sh "chic.data-1.22.0"
diff --git a/recipes/bioconductor-chicago/meta.yaml b/recipes/bioconductor-chicago/meta.yaml
index bc24031fe5277..c5b8124eaea7d 100644
--- a/recipes/bioconductor-chicago/meta.yaml
+++ b/recipes/bioconductor-chicago/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "Chicago" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cecb7a43534f59b758ad7c05a2c0e4fe
+  md5: 854dccdecc3b0fc55c9146908bdeec27
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chicago", max_pin="x.x") }}'
   noarch: generic
 # Suggests: argparser, BiocStyle, knitr, rmarkdown, PCHiCdata, testthat, Rsamtools, GenomicInteractions, GenomicRanges, IRanges, AnnotationHub
 requirements:
diff --git a/recipes/bioconductor-chicken.db/meta.yaml b/recipes/bioconductor-chicken.db/meta.yaml
index 0329c2be32619..3269f8ebba784 100644
--- a/recipes/bioconductor-chicken.db/meta.yaml
+++ b/recipes/bioconductor-chicken.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "chicken.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 512f887df339529d4883aad3f3eb6fb8
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chicken.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.gg.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.gg.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.gg.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.gg.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-chicken.db0/meta.yaml b/recipes/bioconductor-chicken.db0/meta.yaml
index 299fd377f924a..f807a281abb07 100644
--- a/recipes/bioconductor-chicken.db0/meta.yaml
+++ b/recipes/bioconductor-chicken.db0/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "chicken.db0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: bfacdb3f67e914c4d364a512620ec50d
+  md5: 0f0c20a519a9490c0909b68ec67c206d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chicken.db0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-chicken.db0/post-link.sh b/recipes/bioconductor-chicken.db0/post-link.sh
index b88e8c6ac32e0..23df0c7fd0516 100644
--- a/recipes/bioconductor-chicken.db0/post-link.sh
+++ b/recipes/bioconductor-chicken.db0/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "chicken.db0-3.17.0"
+installBiocDataPackage.sh "chicken.db0-3.18.0"
diff --git a/recipes/bioconductor-chickencdf/meta.yaml b/recipes/bioconductor-chickencdf/meta.yaml
index 64bc0b66b2e3b..3aa18b57b0fe8 100644
--- a/recipes/bioconductor-chickencdf/meta.yaml
+++ b/recipes/bioconductor-chickencdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "chickencdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: ab0097b4b7b6c4d94360feb84ab69972
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chickencdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-chickenprobe/meta.yaml b/recipes/bioconductor-chickenprobe/meta.yaml
index 3b7f3bc49a4ff..21e051513a182 100644
--- a/recipes/bioconductor-chickenprobe/meta.yaml
+++ b/recipes/bioconductor-chickenprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "chickenprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b33599081ce1ba768ff7992e143c01d0
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chickenprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-chihaya/meta.yaml b/recipes/bioconductor-chihaya/meta.yaml
index 6166022377359..48ed2f9721a59 100644
--- a/recipes/bioconductor-chihaya/meta.yaml
+++ b/recipes/bioconductor-chihaya/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "chihaya" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 52743ecddbcf6548ab5ed19e629ad989
+  md5: fc8e24fa8ec373d01c938fbfe12c3b9a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chihaya", max_pin="x.x") }}'
 # Suggests: BiocGenerics, S4Vectors, BiocSingular, ResidualMatrix, BiocStyle, testthat, rmarkdown, knitr
 # SystemRequirements: C++17, GNU make
 requirements:
   host:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
     - r-base
     - r-matrix
     - r-rcpp
     - libblas
     - liblapack
   run:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
     - r-base
     - r-matrix
     - r-rcpp
diff --git a/recipes/bioconductor-chimeraviz/meta.yaml b/recipes/bioconductor-chimeraviz/meta.yaml
index 3a0ccce4245d3..e05583b96cc73 100644
--- a/recipes/bioconductor-chimeraviz/meta.yaml
+++ b/recipes/bioconductor-chimeraviz/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "chimeraviz" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 53ba0b753dbd0c0459d5ba1131a95ea9
+  md5: 30227635634cb01d8196626c86dabc26
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chimeraviz", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, roxygen2, devtools, knitr, lintr
 # SystemRequirements: bowtie, samtools, and egrep are required for some functionalities
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-checkmate
     - r-data.table
@@ -51,22 +52,22 @@ requirements:
     - r-rmarkdown
     - bowtie2
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-checkmate
     - r-data.table
diff --git a/recipes/bioconductor-chimp.db0/meta.yaml b/recipes/bioconductor-chimp.db0/meta.yaml
index 6e58d8964a591..ef4f45937f147 100644
--- a/recipes/bioconductor-chimp.db0/meta.yaml
+++ b/recipes/bioconductor-chimp.db0/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "chimp.db0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 0a1382e14c2ace3a9cdc3daf7d7e4013
+  md5: afb020cefb808101626234257bf71f69
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chimp.db0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-chimp.db0/post-link.sh b/recipes/bioconductor-chimp.db0/post-link.sh
index 9fbda934665a5..1298c3be4a0f5 100644
--- a/recipes/bioconductor-chimp.db0/post-link.sh
+++ b/recipes/bioconductor-chimp.db0/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "chimp.db0-3.17.0"
+installBiocDataPackage.sh "chimp.db0-3.18.0"
diff --git a/recipes/bioconductor-chimphumanbraindata/meta.yaml b/recipes/bioconductor-chimphumanbraindata/meta.yaml
index 80e8eb58a1ccc..36d967d68a6ee 100644
--- a/recipes/bioconductor-chimphumanbraindata/meta.yaml
+++ b/recipes/bioconductor-chimphumanbraindata/meta.yaml
@@ -34,7 +34,7 @@ requirements:
     - r-hexbin
     - r-statmod
     - curl
-    - bioconductor-data-packages>=20230706
+    - bioconductor-data-packages >=20230706
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-chipanalyser/meta.yaml b/recipes/bioconductor-chipanalyser/meta.yaml
index 2206c35d793a2..252bfb7c4953c 100644
--- a/recipes/bioconductor-chipanalyser/meta.yaml
+++ b/recipes/bioconductor-chipanalyser/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "ChIPanalyser" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 75932168cfbb3bf4013b82f2cf95bf97
+  md5: 21d3f8fe9fc90548452dab5a3a8e5c0d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chipanalyser", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Dmelanogaster.UCSC.dm6,knitr, RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-biocmanager
     - r-rcolorbrewer
     - r-rcpproll
     - r-rocr
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-biocmanager
     - r-rcolorbrewer
diff --git a/recipes/bioconductor-chipcomp/meta.yaml b/recipes/bioconductor-chipcomp/meta.yaml
index 2966e785af696..df3945bf8cc83 100644
--- a/recipes/bioconductor-chipcomp/meta.yaml
+++ b/recipes/bioconductor-chipcomp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "ChIPComp" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,39 +11,40 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1f3b60264992ea88c72e1d8da73dfa48
+  md5: 5294eab6ada6b66e52935843dd9acc6b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chipcomp", max_pin="x.x") }}'
 # Suggests: BiocStyle,RUnit
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
     - 'bioconductor-bsgenome.mmusculus.ucsc.mm9 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
     - 'bioconductor-bsgenome.mmusculus.ucsc.mm9 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-chipenrich.data/meta.yaml b/recipes/bioconductor-chipenrich.data/meta.yaml
index 9fdd15ef6c4ec..d82da5fbc76ab 100644
--- a/recipes/bioconductor-chipenrich.data/meta.yaml
+++ b/recipes/bioconductor-chipenrich.data/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.24.0" %}
+{% set version = "2.26.0" %}
 {% set name = "chipenrich.data" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,37 +11,38 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 4d9f38a90b43fad02b6448ecfbd36f2d
+  md5: 4918da98125fee82afaeee84930051a8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chipenrich.data", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, devtools, knitr, rmarkdown, roxygen2, testthat, GO.db, org.Dm.eg.db, org.Dr.eg.db, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, TxDb.Dmelanogaster.UCSC.dm3.ensGene, TxDb.Dmelanogaster.UCSC.dm6.ensGene, TxDb.Drerio.UCSC.danRer10.refGene, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Mmusculus.UCSC.mm9.knownGene, TxDb.Mmusculus.UCSC.mm10.knownGene, TxDb.Rnorvegicus.UCSC.rn4.ensGene, TxDb.Rnorvegicus.UCSC.rn5.refGene, TxDb.Rnorvegicus.UCSC.rn6.refGene
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-readr
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-readr
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-chipenrich.data/post-link.sh b/recipes/bioconductor-chipenrich.data/post-link.sh
index fba74203f871f..90df321032f62 100644
--- a/recipes/bioconductor-chipenrich.data/post-link.sh
+++ b/recipes/bioconductor-chipenrich.data/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "chipenrich.data-2.24.0"
+installBiocDataPackage.sh "chipenrich.data-2.26.0"
diff --git a/recipes/bioconductor-chipenrich/meta.yaml b/recipes/bioconductor-chipenrich/meta.yaml
index 16735153cd287..9f53939b6e86e 100644
--- a/recipes/bioconductor-chipenrich/meta.yaml
+++ b/recipes/bioconductor-chipenrich/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.24.0" %}
+{% set version = "2.26.0" %}
 {% set name = "chipenrich" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 85368fc7467101b17025a23231af5ff9
+  md5: bb047e41aba2de216b8384322bb6a7aa
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chipenrich", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, devtools, knitr, rmarkdown, roxygen2, testthat
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-chipenrich.data >=2.24.0,<2.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-org.dm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.dr.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-chipenrich.data >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-org.dm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.dr.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-lattice
     - r-latticeextra
@@ -43,19 +44,19 @@ requirements:
     - r-rms
     - r-stringr
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-chipenrich.data >=2.24.0,<2.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-org.dm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.dr.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-chipenrich.data >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-org.dm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.dr.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-lattice
     - r-latticeextra
diff --git a/recipes/bioconductor-chipexoqual/meta.yaml b/recipes/bioconductor-chipexoqual/meta.yaml
index cab6dcfe66cd7..eaacba6ed4f3c 100644
--- a/recipes/bioconductor-chipexoqual/meta.yaml
+++ b/recipes/bioconductor-chipexoqual/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "ChIPexoQual" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 840ba226b952bac3081c94fb133d1c53
+  md5: c5fc56e308fbcfdf0630f2559c3556a3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chipexoqual", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ChIPexoQualExample (>= 0.99.1), knitr (>= 1.10), BiocStyle, gridExtra (>= 2.2), testthat
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biovizbase >=1.48.0,<1.49.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biovizbase >=1.50.0,<1.51.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-broom >=0.4'
     - 'r-data.table >=1.9.6'
@@ -40,14 +41,14 @@ requirements:
     - 'r-scales >=0.4.0'
     - 'r-viridis >=0.3'
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biovizbase >=1.48.0,<1.49.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biovizbase >=1.50.0,<1.51.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-broom >=0.4'
     - 'r-data.table >=1.9.6'
diff --git a/recipes/bioconductor-chipexoqualexample/meta.yaml b/recipes/bioconductor-chipexoqualexample/meta.yaml
index 47a99c910c890..b98adbff5998f 100644
--- a/recipes/bioconductor-chipexoqualexample/meta.yaml
+++ b/recipes/bioconductor-chipexoqualexample/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "ChIPexoQualExample" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b8a88d767a542955c8dfa93a67c843de
+  md5: 5ebb67a1848aa0e69557e795d236e24b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chipexoqualexample", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-chipexoqualexample/post-link.sh b/recipes/bioconductor-chipexoqualexample/post-link.sh
index b2682c689a4f7..4cb76a02b9673 100644
--- a/recipes/bioconductor-chipexoqualexample/post-link.sh
+++ b/recipes/bioconductor-chipexoqualexample/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "chipexoqualexample-1.24.0"
+installBiocDataPackage.sh "chipexoqualexample-1.26.0"
diff --git a/recipes/bioconductor-chippeakanno/meta.yaml b/recipes/bioconductor-chippeakanno/meta.yaml
index 37eec2d81105c..67ad871c9926b 100644
--- a/recipes/bioconductor-chippeakanno/meta.yaml
+++ b/recipes/bioconductor-chippeakanno/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.34.1" %}
+{% set version = "3.36.0" %}
 {% set name = "ChIPpeakAnno" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c57887a1682adde2e3a9e3ebf5389575
+  md5: d9773752fca7bd32e512d3a5b72236e1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chippeakanno", max_pin="x.x") }}'
   noarch: generic
 # Suggests: AnnotationHub, BSgenome, limma, reactome.db, BiocManager, BiocStyle, BSgenome.Ecoli.NCBI.20080805, BSgenome.Hsapiens.UCSC.hg19, org.Ce.eg.db, org.Hs.eg.db, BSgenome.Celegans.UCSC.ce10, BSgenome.Drerio.UCSC.danRer7, BSgenome.Hsapiens.UCSC.hg38, DelayedArray, idr, seqinr, EnsDb.Hsapiens.v75, EnsDb.Hsapiens.v79, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Hsapiens.UCSC.hg38.knownGene, GO.db, gplots, UpSetR, knitr, rmarkdown, testthat, trackViewer, motifStack, OrganismDbi
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-regioner >=1.32.0,<1.33.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-regioner >=1.34.0,<1.35.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dbi
     - r-dplyr
@@ -48,26 +49,26 @@ requirements:
     - r-matrixstats
     - r-venndiagram
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-regioner >=1.32.0,<1.33.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-regioner >=1.34.0,<1.35.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dbi
     - r-dplyr
diff --git a/recipes/bioconductor-chipqc/meta.yaml b/recipes/bioconductor-chipqc/meta.yaml
index 3a35946828413..2eb975a8384db 100644
--- a/recipes/bioconductor-chipqc/meta.yaml
+++ b/recipes/bioconductor-chipqc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "ChIPQC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 10738588f2408b35b805c47ade29958a
+  md5: b7437c357c5ba27db1f2721a50c15f13
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chipqc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-chipseq >=1.50.0,<1.51.0'
-    - 'bioconductor-diffbind >=3.10.0,<3.11.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-chipseq >=1.52.0,<1.53.0'
+    - 'bioconductor-diffbind >=3.12.0,<3.13.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'bioconductor-txdb.celegans.ucsc.ce6.ensgene >=3.2.0,<3.3.0'
     - 'bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene >=3.2.0,<3.3.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg18.knowngene >=3.2.0,<3.3.0'
@@ -45,17 +46,17 @@ requirements:
     - r-nozzle.r1
     - r-reshape2
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-chipseq >=1.50.0,<1.51.0'
-    - 'bioconductor-diffbind >=3.10.0,<3.11.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-chipseq >=1.52.0,<1.53.0'
+    - 'bioconductor-diffbind >=3.12.0,<3.13.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'bioconductor-txdb.celegans.ucsc.ce6.ensgene >=3.2.0,<3.3.0'
     - 'bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene >=3.2.0,<3.3.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg18.knowngene >=3.2.0,<3.3.0'
diff --git a/recipes/bioconductor-chipseeker/meta.yaml b/recipes/bioconductor-chipseeker/meta.yaml
index ce1d8465acf6d..fe501701d99dd 100644
--- a/recipes/bioconductor-chipseeker/meta.yaml
+++ b/recipes/bioconductor-chipseeker/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "ChIPseeker" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 40fc097874f59ebe1b216c661f812b8e
+  md5: 4e7b7622d7d9d1b3de7b8f9bf49eb8c4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chipseeker", max_pin="x.x") }}'
   noarch: generic
 # Suggests: clusterProfiler, ggimage, ggplotify, ggupset, ggVennDiagram, ReactomePA, org.Hs.eg.db, knitr, rmarkdown, testthat, prettydoc
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-enrichplot >=1.20.0,<1.21.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-enrichplot >=1.22.0,<1.23.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
     - r-aplot
     - r-base
@@ -43,15 +44,15 @@ requirements:
     - r-tibble
     - r-yulab.utils
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-enrichplot >=1.20.0,<1.21.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-enrichplot >=1.22.0,<1.23.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
     - r-aplot
     - r-base
diff --git a/recipes/bioconductor-chipseq/meta.yaml b/recipes/bioconductor-chipseq/meta.yaml
index d651e8addd8b8..1ffd42a2f9cbc 100644
--- a/recipes/bioconductor-chipseq/meta.yaml
+++ b/recipes/bioconductor-chipseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.50.0" %}
+{% set version = "1.52.0" %}
 {% set name = "chipseq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: bf6ac7d66b1527716768e6218f0468e9
+  md5: 5cf8ab297fc95d0a36b4359488c50358
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chipseq", max_pin="x.x") }}'
 # Suggests: BSgenome, GenomicFeatures, TxDb.Mmusculus.UCSC.mm9.knownGene, BSgenome.Mmusculus.UCSC.mm9, BiocStyle, knitr
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - r-lattice
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - r-lattice
   build:
@@ -49,6 +50,8 @@ about:
   summary: 'chipseq: A package for analyzing chipseq data'
   description: 'Tools for helping process short read data for chipseq experiments.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:chipseq
     - doi:10.1038/nmeth.3252
diff --git a/recipes/bioconductor-chipseqdbdata/meta.yaml b/recipes/bioconductor-chipseqdbdata/meta.yaml
index 7fd9e17b951bb..51ec45e800c2a 100644
--- a/recipes/bioconductor-chipseqdbdata/meta.yaml
+++ b/recipes/bioconductor-chipseqdbdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "chipseqDBData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9417adbf6ebe305a0caf0d0eba440cac
+  md5: a6e50016d2d7c0cb085df2c4254b5f84
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chipseqdbdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-chipseqdbdata/post-link.sh b/recipes/bioconductor-chipseqdbdata/post-link.sh
index 2079dff585ed8..3d5e5956052e4 100644
--- a/recipes/bioconductor-chipseqdbdata/post-link.sh
+++ b/recipes/bioconductor-chipseqdbdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "chipseqdbdata-1.16.0"
+installBiocDataPackage.sh "chipseqdbdata-1.18.0"
diff --git a/recipes/bioconductor-chipseqr/meta.yaml b/recipes/bioconductor-chipseqr/meta.yaml
index a69b3f5e17171..659339f6dc305 100644
--- a/recipes/bioconductor-chipseqr/meta.yaml
+++ b/recipes/bioconductor-chipseqr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.54.0" %}
+{% set version = "1.56.0" %}
 {% set name = "ChIPseqR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8c1a94747eb45fbf4d791cbb05961424
+  md5: 8696d6a783d26d8c6225ec4e3f294110
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chipseqr", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hilbertvis >=1.58.0,<1.59.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hilbertvis >=1.60.0,<1.61.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - r-fbasics
     - r-timsac
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hilbertvis >=1.58.0,<1.59.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hilbertvis >=1.60.0,<1.61.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - r-fbasics
     - r-timsac
@@ -50,8 +51,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'GPL (>= 2)'
+  license: 'GPL-3.0-or-later'
   summary: 'Identifying Protein Binding Sites in High-Throughput Sequencing Data'
   description: 'ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome positioning experiments. The model used to describe binding events was developed to locate nucleosomes but should flexible enough to handle other types of experiments as well.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
diff --git a/recipes/bioconductor-chipsim/meta.yaml b/recipes/bioconductor-chipsim/meta.yaml
index 74820f192e5f3..f81fdb6e13dc2 100644
--- a/recipes/bioconductor-chipsim/meta.yaml
+++ b/recipes/bioconductor-chipsim/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.54.0" %}
+{% set version = "1.56.0" %}
 {% set name = "ChIPsim" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8f3239589cefb4c8db5fafe013dcd926
+  md5: e6f1bd9d18f542abace1039c37ada326
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chipsim", max_pin="x.x") }}'
   noarch: generic
 # Suggests: actuar, zoo
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-chipxpress/meta.yaml b/recipes/bioconductor-chipxpress/meta.yaml
index 05e6214d06fb8..3d91446325661 100644
--- a/recipes/bioconductor-chipxpress/meta.yaml
+++ b/recipes/bioconductor-chipxpress/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.44.0" %}
+{% set version = "1.46.0" %}
 {% set name = "ChIPXpress" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 31093ed51ee07a043038f30f431b8df0
+  md5: bed7bbe60d0a51fb667cee9b01e4c407
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chipxpress", max_pin="x.x") }}'
   noarch: generic
 # Suggests: mouse4302frmavecs, mouse4302.db, mouse4302cdf, RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-chipxpressdata >=1.38.0,<1.39.0'
-    - 'bioconductor-frma >=1.52.0,<1.53.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-chipxpressdata >=1.40.0,<1.41.0'
+    - 'bioconductor-frma >=1.54.0,<1.55.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
     - r-base
     - r-biganalytics
     - r-bigmemory
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-chipxpressdata >=1.38.0,<1.39.0'
-    - 'bioconductor-frma >=1.52.0,<1.53.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-chipxpressdata >=1.40.0,<1.41.0'
+    - 'bioconductor-frma >=1.54.0,<1.55.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
     - r-base
     - r-biganalytics
     - r-bigmemory
diff --git a/recipes/bioconductor-chipxpressdata/meta.yaml b/recipes/bioconductor-chipxpressdata/meta.yaml
index 45808acdeb8cb..5651a2b0910c0 100644
--- a/recipes/bioconductor-chipxpressdata/meta.yaml
+++ b/recipes/bioconductor-chipxpressdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "ChIPXpressData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d764e5abb6fadab9aa4184222665fd25
+  md5: 029086a630df9533dedea4babd28f0d7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chipxpressdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -26,7 +27,7 @@ requirements:
     - r-base
     - r-bigmemory
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-chipxpressdata/post-link.sh b/recipes/bioconductor-chipxpressdata/post-link.sh
index de10fb5bf2753..82a974e07cf07 100644
--- a/recipes/bioconductor-chipxpressdata/post-link.sh
+++ b/recipes/bioconductor-chipxpressdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "chipxpressdata-1.38.0"
+installBiocDataPackage.sh "chipxpressdata-1.40.0"
diff --git a/recipes/bioconductor-chopsticks/meta.yaml b/recipes/bioconductor-chopsticks/meta.yaml
index ce6e6f825a531..17c378b1395b0 100644
--- a/recipes/bioconductor-chopsticks/meta.yaml
+++ b/recipes/bioconductor-chopsticks/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.66.0" %}
+{% set version = "1.68.0" %}
 {% set name = "chopsticks" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d89502b5d2b8124bcf02def4af198d1e
+  md5: b63b111068a6d42f7812010d1dc31047
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chopsticks", max_pin="x.x") }}'
 # Suggests: hexbin
 requirements:
   host:
diff --git a/recipes/bioconductor-chromdraw/meta.yaml b/recipes/bioconductor-chromdraw/meta.yaml
index 619ff6d5788fa..8a7c74b6822e0 100644
--- a/recipes/bioconductor-chromdraw/meta.yaml
+++ b/recipes/bioconductor-chromdraw/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.30.0" %}
+{% set version = "2.32.0" %}
 {% set name = "chromDraw" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 396784bb969985d07948449d9370a7ea
+  md5: a2cb0f03cdde9853f68662b1783a2edb
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chromdraw", max_pin="x.x") }}'
 # SystemRequirements: Rtools (>= 3.1)
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - 'r-rcpp >=0.11.1'
     - libblas
     - liblapack
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - 'r-rcpp >=0.11.1'
   build:
@@ -38,11 +39,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-3
+  license: GPL-3.0-only
   summary: 'chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.'
   description: 'ChromDraw is a R package for drawing the schemes of karyotype(s) in the linear and circular fashion. It is possible to visualized cytogenetic marsk on the chromosomes. This tool has own input data format. Input data can be imported from the GenomicRanges data structure. This package can visualized the data in the BED file format. Here is requirement on to the first nine fields of the BED format. Output files format are *.eps and *.svg.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:chromdraw
   parent_recipe:
diff --git a/recipes/bioconductor-chromheatmap/meta.yaml b/recipes/bioconductor-chromheatmap/meta.yaml
index fcd97fa3d6695..b777bfe8ed021 100644
--- a/recipes/bioconductor-chromheatmap/meta.yaml
+++ b/recipes/bioconductor-chromheatmap/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.54.0" %}
+{% set version = "1.56.0" %}
 {% set name = "ChromHeatMap" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,32 +11,33 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a643aa848bc97a9893f442798ab63d51
+  md5: ee08133257bb6da21d100e03fd720323
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chromheatmap", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ALL, hgu95av2.db
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-chromhmmdata/meta.yaml b/recipes/bioconductor-chromhmmdata/meta.yaml
index 31e71bfc05c6f..0dabce226994f 100644
--- a/recipes/bioconductor-chromhmmdata/meta.yaml
+++ b/recipes/bioconductor-chromhmmdata/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.2" %}
 {% set name = "chromhmmData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: eec85c20139b3d826f00264c7b28207c
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chromhmmdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, knitr
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-chromplot/meta.yaml b/recipes/bioconductor-chromplot/meta.yaml
index c679f8ff551d5..38a0a8e56bf16 100644
--- a/recipes/bioconductor-chromplot/meta.yaml
+++ b/recipes/bioconductor-chromplot/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "chromPlot" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8e79af2916f986d3381e6b4bad3a0b03
+  md5: a9a3e6d499f082698be0bf88f6432103
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chromplot", max_pin="x.x") }}'
   noarch: generic
 # Suggests: qtl, GenomicFeatures, TxDb.Hsapiens.UCSC.hg19.knownGene
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-chromscape/meta.yaml b/recipes/bioconductor-chromscape/meta.yaml
index 39884d28d7f71..06a80351408c4 100644
--- a/recipes/bioconductor-chromscape/meta.yaml
+++ b/recipes/bioconductor-chromscape/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "ChromSCape" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f10af25260d45879be22b5009d675957
+  md5: a95b9c5be176f95c178ac7d3a1c26496
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chromscape", max_pin="x.x") }}'
 # Suggests: testthat, knitr, markdown, rmarkdown, BiocStyle, Signac, future, igraph, bluster, httr
 requirements:
   host:
-    - 'bioconductor-batchelor >=1.16.0,<1.17.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-consensusclusterplus >=1.64.0,<1.65.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-batchelor >=1.18.0,<1.19.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-consensusclusterplus >=1.66.0,<1.67.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-colorramps
     - r-colourpicker
@@ -75,20 +76,20 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-batchelor >=1.16.0,<1.17.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-consensusclusterplus >=1.64.0,<1.65.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-batchelor >=1.18.0,<1.19.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-consensusclusterplus >=1.66.0,<1.67.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-colorramps
     - r-colourpicker
diff --git a/recipes/bioconductor-chromstar/meta.yaml b/recipes/bioconductor-chromstar/meta.yaml
index 7bf4d86cf9264..c2f40c3c66293 100644
--- a/recipes/bioconductor-chromstar/meta.yaml
+++ b/recipes/bioconductor-chromstar/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "chromstaR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c7cd6c65772e7ed8857f0c4a7fbde5f2
+  md5: 4288983863e4523b5c7e7750691e8987
 build:
   skip: True  # [osx]
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chromstar", max_pin="x.x") }}'
 # Suggests: knitr, BiocStyle, testthat, biomaRt
 requirements:
   host:
-    - 'bioconductor-bamsignals >=1.32.0,<1.33.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-chromstardata >=1.26.0,<1.27.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bamsignals >=1.34.0,<1.35.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-chromstardata >=1.28.0,<1.29.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-doparallel
     - r-foreach
@@ -39,15 +40,15 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-bamsignals >=1.32.0,<1.33.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-chromstardata >=1.26.0,<1.27.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bamsignals >=1.34.0,<1.35.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-chromstardata >=1.28.0,<1.29.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-doparallel
     - r-foreach
diff --git a/recipes/bioconductor-chromstardata/meta.yaml b/recipes/bioconductor-chromstardata/meta.yaml
index 292e8684ef5a8..1a844f8b5b766 100644
--- a/recipes/bioconductor-chromstardata/meta.yaml
+++ b/recipes/bioconductor-chromstardata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "chromstaRData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 316680e584e9e31c3000a87e666fda3b
+  md5: 7f4a965a6b5aa71874a5cca39046cabf
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chromstardata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-chromstardata/post-link.sh b/recipes/bioconductor-chromstardata/post-link.sh
index 8fe48b9d0b2e1..3707fe3b3448a 100644
--- a/recipes/bioconductor-chromstardata/post-link.sh
+++ b/recipes/bioconductor-chromstardata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "chromstardata-1.26.0"
+installBiocDataPackage.sh "chromstardata-1.28.0"
diff --git a/recipes/bioconductor-chromvar/meta.yaml b/recipes/bioconductor-chromvar/meta.yaml
index 71bf356fd7b8c..dc83da4dba182 100644
--- a/recipes/bioconductor-chromvar/meta.yaml
+++ b/recipes/bioconductor-chromvar/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.1" %}
+{% set version = "1.24.0" %}
 {% set name = "chromVAR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 457ef63195af94e9b077f852ff950120
+  md5: 8e42f2454ce39606fae40e85e437b47b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chromvar", max_pin="x.x") }}'
 # Suggests: JASPAR2016, BSgenome.Hsapiens.UCSC.hg19, readr, testthat, knitr, rmarkdown, pheatmap, motifmatchr
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tfbstools >=1.38.0,<1.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tfbstools >=1.40.0,<1.41.0'
     - r-base
     - r-dt
     - r-ggplot2
@@ -47,17 +48,17 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tfbstools >=1.38.0,<1.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tfbstools >=1.40.0,<1.41.0'
     - r-base
     - r-dt
     - r-ggplot2
diff --git a/recipes/bioconductor-chronos/meta.yaml b/recipes/bioconductor-chronos/meta.yaml
index 74f6e5ec5794e..d599b7baf0635 100644
--- a/recipes/bioconductor-chronos/meta.yaml
+++ b/recipes/bioconductor-chronos/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "CHRONOS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 36aa4b9e641e13b99c425fceaea51902
+  md5: 7d2e5d9c89ea0163868d7b51bfd1c952
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-chronos", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, knitr, rmarkdown
 # SystemRequirements: Java version >= 1.7, Pandoc
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
     - r-base
     - r-circlize
     - r-doparallel
@@ -36,9 +37,9 @@ requirements:
     - r-xml
     - openjdk
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
     - r-base
     - r-circlize
     - r-doparallel
diff --git a/recipes/bioconductor-cicero/meta.yaml b/recipes/bioconductor-cicero/meta.yaml
index c9a1f8ea9da63..3eccb1e945ea0 100644
--- a/recipes/bioconductor-cicero/meta.yaml
+++ b/recipes/bioconductor-cicero/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "cicero" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: df17d0a24bd82617cc2eb0358cb2c01b
+  md5: 642264199171ac5b31a4f296c855dbb7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cicero", max_pin="x.x") }}'
   noarch: generic
 # Suggests: AnnotationDbi (>= 1.38.2), knitr, markdown, rmarkdown, rtracklayer (>= 1.36.6), testthat, vdiffr (>= 0.2.3), covr
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-monocle >=2.28.0,<2.29.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-monocle >=2.30.0,<2.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'r-assertthat >=0.2.0'
     - r-base
     - 'r-data.table >=1.10.4'
@@ -45,13 +46,13 @@ requirements:
     - r-tidyr
     - 'r-vgam >=1.0-5'
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-monocle >=2.28.0,<2.29.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-monocle >=2.30.0,<2.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'r-assertthat >=0.2.0'
     - r-base
     - 'r-data.table >=1.10.4'
diff --git a/recipes/bioconductor-cimice/meta.yaml b/recipes/bioconductor-cimice/meta.yaml
index 167de8864400d..fdd7c4e3115bd 100644
--- a/recipes/bioconductor-cimice/meta.yaml
+++ b/recipes/bioconductor-cimice/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "CIMICE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2b25b8cfb634948761ef0ab0cea2573a
+  md5: 510ab010752cd50654467583c6159ba1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cimice", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, webshot
 requirements:
   host:
-    - 'bioconductor-maftools >=2.16.0,<2.17.0'
+    - 'bioconductor-maftools >=2.18.0,<2.19.0'
     - r-assertthat
     - r-base
     - r-dplyr
@@ -38,7 +39,7 @@ requirements:
     - r-tidyr
     - r-visnetwork
   run:
-    - 'bioconductor-maftools >=2.16.0,<2.17.0'
+    - 'bioconductor-maftools >=2.18.0,<2.19.0'
     - r-assertthat
     - r-base
     - r-dplyr
diff --git a/recipes/bioconductor-cindex/meta.yaml b/recipes/bioconductor-cindex/meta.yaml
index 1ac85c185c36e..b76d809749c35 100644
--- a/recipes/bioconductor-cindex/meta.yaml
+++ b/recipes/bioconductor-cindex/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "CINdex" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8e7b2c4eea3f63ef70beb69855c13e8d
+  md5: 2616a2a02791d966dbf54a54f2ad5f42
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cindex", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, ReactomePA, RUnit, BiocGenerics, AnnotationHub, rtracklayer, pd.genomewidesnp.6, org.Hs.eg.db, biovizBase, TxDb.Hsapiens.UCSC.hg18.knownGene, methods, Biostrings,Homo.sapiens, R.utils
 requirements:
   host:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-bitops
     - r-dplyr
@@ -34,10 +35,10 @@ requirements:
     - r-som
     - r-stringr
   run:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-bitops
     - r-dplyr
diff --git a/recipes/bioconductor-circrnaprofiler/meta.yaml b/recipes/bioconductor-circrnaprofiler/meta.yaml
index 28a7828103941..169e8226f8928 100644
--- a/recipes/bioconductor-circrnaprofiler/meta.yaml
+++ b/recipes/bioconductor-circrnaprofiler/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "circRNAprofiler" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 185095e44fb0afd5f381d76f4a9d11b8
+  md5: 5cd7f621f355f9d816938675dd550e2f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-circrnaprofiler", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, roxygen2, rmarkdown, devtools, gridExtra, ggpubr, VennDiagram, BSgenome.Mmusculus.UCSC.mm9, BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10, BiocManager,
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gwascat >=2.32.0,<2.33.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-universalmotif >=1.18.0,<1.19.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gwascat >=2.34.0,<2.35.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-universalmotif >=1.20.0,<1.21.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -46,19 +47,19 @@ requirements:
     - r-stringi
     - r-stringr
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gwascat >=2.32.0,<2.33.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-universalmotif >=1.18.0,<1.19.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gwascat >=2.34.0,<2.35.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-universalmotif >=1.20.0,<1.21.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-circseqaligntk/meta.yaml b/recipes/bioconductor-circseqaligntk/meta.yaml
index 8762be109cfe7..1552ea1595ddc 100644
--- a/recipes/bioconductor-circseqaligntk/meta.yaml
+++ b/recipes/bioconductor-circseqaligntk/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "CircSeqAlignTk" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5afd52c06cc2be5978037ddbaf1c6b9d
+  md5: 2c3b93fca2c2974a45af093edf7d9558
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-circseqaligntk", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, R.utils, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rbowtie2 >=2.6.0,<2.7.0'
-    - 'bioconductor-rhisat2 >=1.16.0,<1.17.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rbowtie2 >=2.8.0,<2.9.0'
+    - 'bioconductor-rhisat2 >=1.18.0,<1.19.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -36,14 +37,14 @@ requirements:
     - r-rlang
     - r-tidyr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rbowtie2 >=2.6.0,<2.7.0'
-    - 'bioconductor-rhisat2 >=1.16.0,<1.17.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rbowtie2 >=2.8.0,<2.9.0'
+    - 'bioconductor-rhisat2 >=1.18.0,<1.19.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-cispath/meta.yaml b/recipes/bioconductor-cispath/meta.yaml
index 198ea08df04db..cc4f2f6708169 100644
--- a/recipes/bioconductor-cispath/meta.yaml
+++ b/recipes/bioconductor-cispath/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "cisPath" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d9fb575eb3e75ecca9e49aae03f99e16
+  md5: 958a35281b9aa98b2d5c3a5c4e9c8824
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cispath", max_pin="x.x") }}'
 requirements:
   host:
     - r-base
diff --git a/recipes/bioconductor-citefuse/meta.yaml b/recipes/bioconductor-citefuse/meta.yaml
index c401b9e42dab4..b64daab89d292 100644
--- a/recipes/bioconductor-citefuse/meta.yaml
+++ b/recipes/bioconductor-citefuse/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "CiteFuse" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2a24d3bcaca6d446c6992c8f337deb15
+  md5: d612b20352aa6e753d90baa4f24b058f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-citefuse", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, DT, mclust, scater, ExPosition, BiocStyle, pkgdown
 requirements:
   host:
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-compositions
     - r-cowplot
@@ -47,11 +48,11 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-compositions
     - r-cowplot
diff --git a/recipes/bioconductor-citruscdf/meta.yaml b/recipes/bioconductor-citruscdf/meta.yaml
index a1500a296707c..650b3066528a8 100644
--- a/recipes/bioconductor-citruscdf/meta.yaml
+++ b/recipes/bioconductor-citruscdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "citruscdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 4af821a0c1ae1adf42b7dc5ce7458593
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-citruscdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-citrusprobe/meta.yaml b/recipes/bioconductor-citrusprobe/meta.yaml
index 762e4af7c0c8f..2c386ee4e5874 100644
--- a/recipes/bioconductor-citrusprobe/meta.yaml
+++ b/recipes/bioconductor-citrusprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "citrusprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 259b114f96d5307c447d000bd27a7d15
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-citrusprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-clariomdhumanprobeset.db/meta.yaml b/recipes/bioconductor-clariomdhumanprobeset.db/meta.yaml
index 7584a97d8f7b3..85c5b7c172edf 100644
--- a/recipes/bioconductor-clariomdhumanprobeset.db/meta.yaml
+++ b/recipes/bioconductor-clariomdhumanprobeset.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "clariomdhumanprobeset.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 01cb1a5cc4674750b6ce5988cd62fad3
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clariomdhumanprobeset.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-clariomdhumantranscriptcluster.db/meta.yaml b/recipes/bioconductor-clariomdhumantranscriptcluster.db/meta.yaml
index ae9a312dc03a3..a76e5a52dc2cb 100644
--- a/recipes/bioconductor-clariomdhumantranscriptcluster.db/meta.yaml
+++ b/recipes/bioconductor-clariomdhumantranscriptcluster.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "clariomdhumantranscriptcluster.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 80739a70d77ab785231a9367938035a8
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clariomdhumantranscriptcluster.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-clariomshumanhttranscriptcluster.db/meta.yaml b/recipes/bioconductor-clariomshumanhttranscriptcluster.db/meta.yaml
index daa168f43926a..d70ad9cdca7f4 100644
--- a/recipes/bioconductor-clariomshumanhttranscriptcluster.db/meta.yaml
+++ b/recipes/bioconductor-clariomshumanhttranscriptcluster.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "clariomshumanhttranscriptcluster.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 6a5e8e1f9768694be99277aafcc0a69a
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clariomshumanhttranscriptcluster.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-clariomshumantranscriptcluster.db/meta.yaml b/recipes/bioconductor-clariomshumantranscriptcluster.db/meta.yaml
index 264f39fc4cc19..794a3936044f0 100644
--- a/recipes/bioconductor-clariomshumantranscriptcluster.db/meta.yaml
+++ b/recipes/bioconductor-clariomshumantranscriptcluster.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "clariomshumantranscriptcluster.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 309b29e044e1227da6d4825bbdf04b76
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clariomshumantranscriptcluster.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-clariomsmousehttranscriptcluster.db/meta.yaml b/recipes/bioconductor-clariomsmousehttranscriptcluster.db/meta.yaml
index f23ef7e29afe2..1074e66c5774d 100644
--- a/recipes/bioconductor-clariomsmousehttranscriptcluster.db/meta.yaml
+++ b/recipes/bioconductor-clariomsmousehttranscriptcluster.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "clariomsmousehttranscriptcluster.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: c0aa96cbd5ee7e19296dde5a72232d17
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clariomsmousehttranscriptcluster.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-clariomsmousetranscriptcluster.db/meta.yaml b/recipes/bioconductor-clariomsmousetranscriptcluster.db/meta.yaml
index 900a5fd7c540e..271042584f0fd 100644
--- a/recipes/bioconductor-clariomsmousetranscriptcluster.db/meta.yaml
+++ b/recipes/bioconductor-clariomsmousetranscriptcluster.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "clariomsmousetranscriptcluster.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 76d0e2204dcbd5d85d8e53d43710aac5
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clariomsmousetranscriptcluster.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-clariomsrathttranscriptcluster.db/meta.yaml b/recipes/bioconductor-clariomsrathttranscriptcluster.db/meta.yaml
index dda97365b309e..326e026ab0521 100644
--- a/recipes/bioconductor-clariomsrathttranscriptcluster.db/meta.yaml
+++ b/recipes/bioconductor-clariomsrathttranscriptcluster.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "clariomsrathttranscriptcluster.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: e7c71721f8201bfd1553a98cfbf47458
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clariomsrathttranscriptcluster.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-clariomsrattranscriptcluster.db/meta.yaml b/recipes/bioconductor-clariomsrattranscriptcluster.db/meta.yaml
index e1e18af7efc25..15edbc0937e97 100644
--- a/recipes/bioconductor-clariomsrattranscriptcluster.db/meta.yaml
+++ b/recipes/bioconductor-clariomsrattranscriptcluster.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "clariomsrattranscriptcluster.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 72923a3a90f2df27a361b1730cfc0d00
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clariomsrattranscriptcluster.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-classifyr/meta.yaml b/recipes/bioconductor-classifyr/meta.yaml
index 300df606e5dc9..704f02bfee8e5 100644
--- a/recipes/bioconductor-classifyr/meta.yaml
+++ b/recipes/bioconductor-classifyr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.4.7" %}
+{% set version = "3.6.2" %}
 {% set name = "ClassifyR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 61d0fa2d28ce2d1a8f3c984f7dc71e4c
+  md5: 002678b6aeace9d7967b87654547a4f3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-classifyr", max_pin="x.x") }}'
 # Suggests: limma, edgeR, car, Rmixmod, gridExtra (>= 2.0.0), cowplot, BiocStyle, pamr, PoiClaClu, parathyroidSE, knitr, htmltools, gtable, scales, e1071, rmarkdown, IRanges, robustbase, glmnet, class, randomForestSRC, MatrixModels, xgboost, data.tree, ggnewscale
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-generics
     - 'r-ggplot2 >=3.0.0'
     - r-ggpubr
+    - r-ggupset
     - r-ranger
     - r-reshape2
     - r-rlang
@@ -37,15 +39,16 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-generics
     - 'r-ggplot2 >=3.0.0'
     - r-ggpubr
+    - r-ggupset
     - r-ranger
     - r-reshape2
     - r-rlang
diff --git a/recipes/bioconductor-cleanupdtseq/meta.yaml b/recipes/bioconductor-cleanupdtseq/meta.yaml
index 526d1e356a691..722708178c451 100644
--- a/recipes/bioconductor-cleanupdtseq/meta.yaml
+++ b/recipes/bioconductor-cleanupdtseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "cleanUpdTSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4fc6f5fd9421004bf9ab234060d7714d
+  md5: 52f27e948758be1db9d6b003d69a84b9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cleanupdtseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, rmarkdown, knitr, RUnit, BiocGenerics (>= 0.1.0)
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.drerio.ucsc.danrer7 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-e1071
     - r-seqinr
     - r-stringr
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.drerio.ucsc.danrer7 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-e1071
     - r-seqinr
diff --git a/recipes/bioconductor-cleaver/meta.yaml b/recipes/bioconductor-cleaver/meta.yaml
index 817641b020b8e..e69fedb991a3b 100644
--- a/recipes/bioconductor-cleaver/meta.yaml
+++ b/recipes/bioconductor-cleaver/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "cleaver" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: cd859842ff42dc19c2d4356fbb9f65f9
+  md5: 978f7bba3eb0dae3a3edee5c5721de7b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cleaver", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 0.8), knitr, BiocStyle (>= 0.0.14), rmarkdown, BRAIN, UniProt.ws (>= 2.36.5)
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-clevrvis/meta.yaml b/recipes/bioconductor-clevrvis/meta.yaml
index 09cd3712f83bb..4cbdb433898df 100644
--- a/recipes/bioconductor-clevrvis/meta.yaml
+++ b/recipes/bioconductor-clevrvis/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "clevRvis" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 43c9647c43af55cee12813e91c37f569
+  md5: 96fde7a442a2cdb69754ebf1e68ccc65
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clevrvis", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle
 requirements:
diff --git a/recipes/bioconductor-clippda/meta.yaml b/recipes/bioconductor-clippda/meta.yaml
index ee2060d37cffa..4aea5febf6e97 100644
--- a/recipes/bioconductor-clippda/meta.yaml
+++ b/recipes/bioconductor-clippda/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.50.0" %}
+{% set version = "1.52.0" %}
 {% set name = "clippda" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f31b017726d6b75db0537ae313adc135
+  md5: d416c567cfb3615472045bc57c2bce72
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clippda", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-lattice
     - r-rgl
     - r-scatterplot3d
     - r-statmod
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-lattice
     - r-rgl
diff --git a/recipes/bioconductor-clipper/meta.yaml b/recipes/bioconductor-clipper/meta.yaml
index d0e6246555f54..63e140182b6f3 100644
--- a/recipes/bioconductor-clipper/meta.yaml
+++ b/recipes/bioconductor-clipper/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "clipper" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 421940d057355924606d4cfe710237d0
+  md5: 551f3c6ad3a56f2a70439f48a4aef431
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clipper", max_pin="x.x") }}'
 # Suggests: RUnit, BiocGenerics, graphite, ALL, hgu95av2.db, MASS, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-kegggraph >=1.60.0,<1.61.0'
-    - 'bioconductor-qpgraph >=2.34.0,<2.35.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-kegggraph >=1.62.0,<1.63.0'
+    - 'bioconductor-qpgraph >=2.36.0,<2.37.0'
     - r-base
     - r-corpcor
     - 'r-grbase >=1.6.6'
@@ -34,11 +34,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-kegggraph >=1.60.0,<1.61.0'
-    - 'bioconductor-qpgraph >=2.34.0,<2.35.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-kegggraph >=1.62.0,<1.63.0'
+    - 'bioconductor-qpgraph >=2.36.0,<2.37.0'
     - r-base
     - r-corpcor
     - 'r-grbase >=1.6.6'
diff --git a/recipes/bioconductor-cliprofiler/meta.yaml b/recipes/bioconductor-cliprofiler/meta.yaml
index a7a37aff8423f..c0910f32ab09f 100644
--- a/recipes/bioconductor-cliprofiler/meta.yaml
+++ b/recipes/bioconductor-cliprofiler/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "cliProfiler" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 54bce2fd9a5c5b30887a3139c0c50301
+  md5: 10a33ec5af89503fcb12a8142ec966f8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cliprofiler", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, bookdown, testthat, BiocStyle, BSgenome.Mmusculus.UCSC.mm10
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-ggplot2
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-cliquems/meta.yaml b/recipes/bioconductor-cliquems/meta.yaml
index a7e4df20a8ce3..0c96850839c51 100644
--- a/recipes/bioconductor-cliquems/meta.yaml
+++ b/recipes/bioconductor-cliquems/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.13.0" %}
+{% set version = "1.16.0" %}
 {% set name = "cliqueMS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 21a77001912e964b72c091a32961b42b
+  md5: f423e41dd4ca04cefe4bd5be77ceec3a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cliquems", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, testthat, CAMERA
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-base
     - r-bh
     - r-igraph
@@ -33,8 +34,8 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-base
     - r-bh
     - r-igraph
diff --git a/recipes/bioconductor-cll/meta.yaml b/recipes/bioconductor-cll/meta.yaml
index e87436e996e9b..dfeb4ff22d3ea 100644
--- a/recipes/bioconductor-cll/meta.yaml
+++ b/recipes/bioconductor-cll/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "CLL" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: af6541d53d8bb71eb10e661c0a6efde0
+  md5: 4f71fa48ba2205b80c098275c866ac1f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cll", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-cll/post-link.sh b/recipes/bioconductor-cll/post-link.sh
index 253975f1a9713..bfc51d8a40c4f 100644
--- a/recipes/bioconductor-cll/post-link.sh
+++ b/recipes/bioconductor-cll/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "cll-1.40.0"
+installBiocDataPackage.sh "cll-1.42.0"
diff --git a/recipes/bioconductor-cllmethylation/meta.yaml b/recipes/bioconductor-cllmethylation/meta.yaml
index 30437c33b2d02..1ed25ff3378d0 100644
--- a/recipes/bioconductor-cllmethylation/meta.yaml
+++ b/recipes/bioconductor-cllmethylation/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "CLLmethylation" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e3304bdcdaa207660d51a29e1ad2a4c6
+  md5: a8c3768dca1df5bb9e911878b68ad4c4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cllmethylation", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, ggplot2, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-cllmethylation/post-link.sh b/recipes/bioconductor-cllmethylation/post-link.sh
index e74887d8fb150..24af32275232b 100644
--- a/recipes/bioconductor-cllmethylation/post-link.sh
+++ b/recipes/bioconductor-cllmethylation/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "cllmethylation-1.20.0"
+installBiocDataPackage.sh "cllmethylation-1.22.0"
diff --git a/recipes/bioconductor-clomial/meta.yaml b/recipes/bioconductor-clomial/meta.yaml
index 966b40e4e4735..280429af62f00 100644
--- a/recipes/bioconductor-clomial/meta.yaml
+++ b/recipes/bioconductor-clomial/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "Clomial" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3b126ecc8f8786eeb190d8a150326562
+  md5: 71e609b1bef40cdadcd812f99a5956e8
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clomial", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-clst/meta.yaml b/recipes/bioconductor-clst/meta.yaml
index 6a88fe2a497e7..40c671b879c52 100644
--- a/recipes/bioconductor-clst/meta.yaml
+++ b/recipes/bioconductor-clst/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "clst" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: b9c002ff0d92c15fef6fc5abd3c76789
+  md5: 5988cf1c0b5207d2f78f75dbe6f2b467
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clst", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit
 requirements:
   host:
-    - 'bioconductor-roc >=1.76.0,<1.77.0'
+    - 'bioconductor-roc >=1.78.0,<1.79.0'
     - r-base
     - r-lattice
   run:
-    - 'bioconductor-roc >=1.76.0,<1.77.0'
+    - 'bioconductor-roc >=1.78.0,<1.79.0'
     - r-base
     - r-lattice
 test:
diff --git a/recipes/bioconductor-clstutils/meta.yaml b/recipes/bioconductor-clstutils/meta.yaml
index c38910cfda1f3..fbd9437560808 100644
--- a/recipes/bioconductor-clstutils/meta.yaml
+++ b/recipes/bioconductor-clstutils/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "clstutils" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 40f1c145c0d85feb28a7935705b389fb
+  md5: 4343490b2b05bf2e4429f2081b3a82c5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clstutils", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit
 requirements:
   host:
-    - 'bioconductor-clst >=1.48.0,<1.49.0'
+    - 'bioconductor-clst >=1.50.0,<1.51.0'
     - r-ape
     - r-base
     - r-lattice
     - r-rjson
     - r-rsqlite
   run:
-    - 'bioconductor-clst >=1.48.0,<1.49.0'
+    - 'bioconductor-clst >=1.50.0,<1.51.0'
     - r-ape
     - r-base
     - r-lattice
diff --git a/recipes/bioconductor-clumsid/meta.yaml b/recipes/bioconductor-clumsid/meta.yaml
index 49ee2d606b139..f845097e08a5c 100644
--- a/recipes/bioconductor-clumsid/meta.yaml
+++ b/recipes/bioconductor-clumsid/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "CluMSID" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1b38aa0e170c6aff41ab31e3bcb47ed7
+  md5: 0f441929cf30f7ab6c9a035023ef3a20
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clumsid", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, dplyr, readr, stringr, magrittr, CluMSIDdata, metaMS, metaMSdata, xcms
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-ape
     - r-base
     - r-dbscan
@@ -36,10 +37,10 @@ requirements:
     - r-rcolorbrewer
     - r-sna
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-ape
     - r-base
     - r-dbscan
diff --git a/recipes/bioconductor-clumsiddata/meta.yaml b/recipes/bioconductor-clumsiddata/meta.yaml
index 2176b782a6929..ea06ae2fe5f88 100644
--- a/recipes/bioconductor-clumsiddata/meta.yaml
+++ b/recipes/bioconductor-clumsiddata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "CluMSIDdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8f97c24b60d106fe1285496ace8fad79
+  md5: 315da29d9f052e0abfbad59be9606f34
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clumsiddata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-clumsiddata/post-link.sh b/recipes/bioconductor-clumsiddata/post-link.sh
index 13dcc91868f79..2e82be8661106 100644
--- a/recipes/bioconductor-clumsiddata/post-link.sh
+++ b/recipes/bioconductor-clumsiddata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "clumsiddata-1.16.0"
+installBiocDataPackage.sh "clumsiddata-1.18.0"
diff --git a/recipes/bioconductor-clustcomp/meta.yaml b/recipes/bioconductor-clustcomp/meta.yaml
index bf6927af6b6c4..b3fc8f1f502a3 100644
--- a/recipes/bioconductor-clustcomp/meta.yaml
+++ b/recipes/bioconductor-clustcomp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "clustComp" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5d1d219e2545f57d1d323e65497c50ea
+  md5: c1783d91366b98b4afbe0b0acc49c452
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clustcomp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biobase, colonCA, RUnit, BiocGenerics
 requirements:
diff --git a/recipes/bioconductor-clusterexperiment/meta.yaml b/recipes/bioconductor-clusterexperiment/meta.yaml
index 8490b0476dbcc..82eb2c72a6339 100644
--- a/recipes/bioconductor-clusterexperiment/meta.yaml
+++ b/recipes/bioconductor-clusterexperiment/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.20.0" %}
+{% set version = "2.22.0" %}
 {% set name = "clusterExperiment" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7f32e3bf65cc1997b021722429f34700
+  md5: 0a4bac02f2b310d941afe62b329e7eee
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clusterexperiment", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, testthat, MAST, Rtsne, scran, igraph, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-mbkmeans >=1.16.0,<1.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-zinbwave >=1.22.0,<1.23.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-mbkmeans >=1.18.0,<1.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-zinbwave >=1.24.0,<1.25.0'
     - 'r-ape >=5.0'
     - r-base
     - r-cluster
@@ -49,17 +50,17 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-mbkmeans >=1.16.0,<1.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-zinbwave >=1.22.0,<1.23.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-mbkmeans >=1.18.0,<1.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-zinbwave >=1.24.0,<1.25.0'
     - 'r-ape >=5.0'
     - r-base
     - r-cluster
diff --git a/recipes/bioconductor-clusterjudge/meta.yaml b/recipes/bioconductor-clusterjudge/meta.yaml
index 5ce838aabca2c..6b919674df414 100644
--- a/recipes/bioconductor-clusterjudge/meta.yaml
+++ b/recipes/bioconductor-clusterjudge/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "ClusterJudge" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 56ecef405e11e333d5c93fe785ba3c8e
+  md5: 1f1db5b57d83f67f60de690e6f224bde
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clusterjudge", max_pin="x.x") }}'
   noarch: generic
 # Suggests: yeastExpData, knitr, rmarkdown, devtools, testthat, biomaRt
 requirements:
diff --git a/recipes/bioconductor-clusterprofiler/meta.yaml b/recipes/bioconductor-clusterprofiler/meta.yaml
index fdae3be5aa869..f55cd8017a8be 100644
--- a/recipes/bioconductor-clusterprofiler/meta.yaml
+++ b/recipes/bioconductor-clusterprofiler/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "4.8.1" %}
+{% set version = "4.10.0" %}
 {% set name = "clusterProfiler" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,47 +11,52 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7ad792319e54d0f39cd6caff54dc1021
+  md5: 6eb1c0888849211e04896b3431460048
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clusterprofiler", max_pin="x.x") }}'
   noarch: generic
-# Suggests: AnnotationHub, knitr, rmarkdown, org.Hs.eg.db, prettydoc, ReactomePA, testthat
+# Suggests: AnnotationHub, knitr, jsonlite, readr, rmarkdown, org.Hs.eg.db, prettydoc, BiocManager, testthat
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-enrichplot >=1.20.0,<1.21.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-gosemsim >=2.26.0,<2.27.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-enrichplot >=1.22.0,<1.23.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-gosemsim >=2.28.0,<2.29.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
     - r-downloader
     - r-dplyr
     - 'r-gson >=0.0.7'
+    - r-httr
+    - r-igraph
     - r-magrittr
     - r-plyr
     - r-rlang
     - r-tidyr
-    - r-yulab.utils
+    - 'r-yulab.utils >=0.0.7'
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-enrichplot >=1.20.0,<1.21.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-gosemsim >=2.26.0,<2.27.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-enrichplot >=1.22.0,<1.23.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-gosemsim >=2.28.0,<2.29.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
     - r-downloader
     - r-dplyr
     - 'r-gson >=0.0.7'
+    - r-httr
+    - r-igraph
     - r-magrittr
     - r-plyr
     - r-rlang
     - r-tidyr
-    - r-yulab.utils
+    - 'r-yulab.utils >=0.0.7'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-clusterseq/build.sh b/recipes/bioconductor-clusterseq/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-clusterseq/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-clusterseq/meta.yaml b/recipes/bioconductor-clusterseq/meta.yaml
new file mode 100644
index 0000000000000..89f709b6c7c02
--- /dev/null
+++ b/recipes/bioconductor-clusterseq/meta.yaml
@@ -0,0 +1,43 @@
+{% set version = "1.26.0" %}
+{% set name = "clusterSeq" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: c0f51fc6b851b707de4f53107c6179f5
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clusterseq", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle
+requirements:
+  host:
+    - 'bioconductor-bayseq >=2.36.0,<2.37.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - r-base
+  run:
+    - 'bioconductor-bayseq >=2.36.0,<2.37.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - r-base
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'Clustering of high-throughput sequencing data by identifying co-expression patterns'
+  description: 'Identification of clusters of co-expressed genes based on their expression across multiple (replicated) biological samples.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-clustersignificance/meta.yaml b/recipes/bioconductor-clustersignificance/meta.yaml
index 578873112c4d8..452ee4190c486 100644
--- a/recipes/bioconductor-clustersignificance/meta.yaml
+++ b/recipes/bioconductor-clustersignificance/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "ClusterSignificance" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e2c35b077596b2fe12be5c9baff99047
+  md5: 46f8a23ba4910712f2c65ebbb151ad4f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clustersignificance", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, BiocStyle, ggplot2, plsgenomics, covr
 requirements:
diff --git a/recipes/bioconductor-clusterstab/meta.yaml b/recipes/bioconductor-clusterstab/meta.yaml
index ac9e1a16e147f..0f20cc38a7835 100644
--- a/recipes/bioconductor-clusterstab/meta.yaml
+++ b/recipes/bioconductor-clusterstab/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "clusterStab" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 42577966d771992cbafdf2efdcdda484
+  md5: 87f3941fd121e6a60acdefd9a682ba9a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clusterstab", max_pin="x.x") }}'
   noarch: generic
 # Suggests: fibroEset, genefilter
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-clustifyr/meta.yaml b/recipes/bioconductor-clustifyr/meta.yaml
index 8f891d05b5519..2cb67cd3a2219 100644
--- a/recipes/bioconductor-clustifyr/meta.yaml
+++ b/recipes/bioconductor-clustifyr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "clustifyr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 6744ece04f6b8aacaff4d235cdf1458b
+  md5: 5fc803262c7a3b4d11d464f30a110802
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clustifyr", max_pin="x.x") }}'
   noarch: generic
-# Suggests: ComplexHeatmap, covr, knitr, rmarkdown, testthat, ggrepel, BiocStyle, BiocManager, remotes, shiny, Seurat, gprofiler2, purrr
+# Suggests: ComplexHeatmap, covr, knitr, rmarkdown, testthat, ggrepel, BiocStyle, BiocManager, remotes, shiny, Seurat, gprofiler2, purrr, data.table, R.utils
 requirements:
   host:
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cowplot
     - r-dplyr
@@ -34,17 +35,16 @@ requirements:
     - r-matrix
     - r-matrixstats
     - r-proxy
-    - r-readr
     - r-rlang
     - r-scales
     - r-stringr
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cowplot
     - r-dplyr
@@ -54,7 +54,6 @@ requirements:
     - r-matrix
     - r-matrixstats
     - r-proxy
-    - r-readr
     - r-rlang
     - r-scales
     - r-stringr
diff --git a/recipes/bioconductor-clustifyrdatahub/meta.yaml b/recipes/bioconductor-clustifyrdatahub/meta.yaml
index c271419be117c..c910400fc78c8 100644
--- a/recipes/bioconductor-clustifyrdatahub/meta.yaml
+++ b/recipes/bioconductor-clustifyrdatahub/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "clustifyrdatahub" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d1345a885c1b770cd461cf3c69451b39
+  md5: aac4529e5c0d71fdc49bda51c3915f61
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clustifyrdatahub", max_pin="x.x") }}'
   noarch: generic
 # Suggests: clustifyr, Seurat, usethis, rmarkdown, knitr, tidyr, BiocStyle
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-clustifyrdatahub/post-link.sh b/recipes/bioconductor-clustifyrdatahub/post-link.sh
index 6913cf66ffe04..312ed6f9276d2 100644
--- a/recipes/bioconductor-clustifyrdatahub/post-link.sh
+++ b/recipes/bioconductor-clustifyrdatahub/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "clustifyrdatahub-1.10.0"
+installBiocDataPackage.sh "clustifyrdatahub-1.12.0"
diff --git a/recipes/bioconductor-clustirr/build.sh b/recipes/bioconductor-clustirr/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-clustirr/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-clustirr/meta.yaml b/recipes/bioconductor-clustirr/meta.yaml
new file mode 100644
index 0000000000000..58ca1182b4301
--- /dev/null
+++ b/recipes/bioconductor-clustirr/meta.yaml
@@ -0,0 +1,47 @@
+{% set version = "1.0.0" %}
+{% set name = "ClustIRR" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: ffd1884844b297c2e593e465a776fb6d
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-clustirr", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, knitr, testthat, ggplot2, patchwork, ggrepel
+requirements:
+  host:
+    - r-base
+    - r-future
+    - r-future.apply
+    - r-igraph
+    - r-stringdist
+    - r-visnetwork
+  run:
+    - r-base
+    - r-future
+    - r-future.apply
+    - r-igraph
+    - r-stringdist
+    - r-visnetwork
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'GPL-3 + file LICENSE'
+  summary: 'Clustering of immune receptor repertoires'
+  description: 'ClustIRR is a quantitative method for clustering of immune receptor repertoires (IRRs). The algorithm identifies groups of T or B cell receptors (TCRs or BCRs) with similar specificity by comparing their sequences. ClustIRR uses graphs to visualize the specificity structures of IRRs.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-cma/meta.yaml b/recipes/bioconductor-cma/meta.yaml
index 7cf5de809d7e7..7dcc40d917ad9 100644
--- a/recipes/bioconductor-cma/meta.yaml
+++ b/recipes/bioconductor-cma/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.58.0" %}
+{% set version = "1.60.0" %}
 {% set name = "CMA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d7b22a1bca581dca052746c3049d15b7
+  md5: 6654a3ef8f06edc618b81b8a059b2139
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cma", max_pin="x.x") }}'
   noarch: generic
 # Suggests: MASS, class, nnet, glmnet, e1071, randomForest, plsgenomics, gbm, mgcv, corpcor, limma, st, mvtnorm
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-cmap/meta.yaml b/recipes/bioconductor-cmap/meta.yaml
index 007b0c087943c..d9037cbfaab0a 100644
--- a/recipes/bioconductor-cmap/meta.yaml
+++ b/recipes/bioconductor-cmap/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.15.1" %}
 {% set name = "cMAP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: dbf8df4d4540151936884e1c5d747bcf
 build:
-  number: 14
+  number: 15
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cmap", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-cmap2data/meta.yaml b/recipes/bioconductor-cmap2data/meta.yaml
index f8cd0f45b31df..7b58d905ef119 100644
--- a/recipes/bioconductor-cmap2data/meta.yaml
+++ b/recipes/bioconductor-cmap2data/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "cMap2data" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: dd007c68b5fd75539c62081497ab1ee5
+  md5: c5ecbc59a690426c6def7feb720e1a7d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cmap2data", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-cmap2data/post-link.sh b/recipes/bioconductor-cmap2data/post-link.sh
index 679c3f090733e..ca70907c04096 100644
--- a/recipes/bioconductor-cmap2data/post-link.sh
+++ b/recipes/bioconductor-cmap2data/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "cmap2data-1.36.0"
+installBiocDataPackage.sh "cmap2data-1.38.0"
diff --git a/recipes/bioconductor-cmapr/meta.yaml b/recipes/bioconductor-cmapr/meta.yaml
index 3b0121b7fb521..03a057ffbe9ef 100644
--- a/recipes/bioconductor-cmapr/meta.yaml
+++ b/recipes/bioconductor-cmapr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "cmapR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: de47953e61c6df4cd2db9d5551cdcffc
+  md5: 257c275c11341cac65aae8f0d8cd4e2f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cmapr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, BiocStyle, rmarkdown
 requirements:
   host:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-matrixstats
   run:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-matrixstats
diff --git a/recipes/bioconductor-cn.farms/meta.yaml b/recipes/bioconductor-cn.farms/meta.yaml
index 3e4bdcf6ffbda..43f61d3317be2 100644
--- a/recipes/bioconductor-cn.farms/meta.yaml
+++ b/recipes/bioconductor-cn.farms/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "cn.farms" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c8dbca1cbb703358e3e24c5fe1d63ee1
+  md5: 8a991cf7fb9deb2d6ed855617dcfb853
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cn.farms", max_pin="x.x") }}'
 # Suggests: pd.mapping250k.sty, pd.mapping250k.nsp, pd.genomewidesnp.5, pd.genomewidesnp.6
 requirements:
   host:
-    - 'bioconductor-affxparser >=1.72.0,<1.73.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-affxparser >=1.74.0,<1.75.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - r-ff
@@ -34,12 +35,12 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-affxparser >=1.72.0,<1.73.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-affxparser >=1.74.0,<1.75.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - r-ff
diff --git a/recipes/bioconductor-cn.mops/meta.yaml b/recipes/bioconductor-cn.mops/meta.yaml
index 12f2094e41535..d923f5f26fc2d 100644
--- a/recipes/bioconductor-cn.mops/meta.yaml
+++ b/recipes/bioconductor-cn.mops/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "cn.mops" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 76e3ef5df3615011d3ba8fbf432ee0d0
+  md5: e4e51a7ecd3810464be443ba9a6b6919
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cn.mops", max_pin="x.x") }}'
 # Suggests: DNAcopy
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-exomecopy >=1.46.0,<1.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-exomecopy >=1.48.0,<1.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-exomecopy >=1.46.0,<1.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-exomecopy >=1.48.0,<1.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-cnanorm/meta.yaml b/recipes/bioconductor-cnanorm/meta.yaml
index bf9abd406114f..8a3abf24ba8c5 100644
--- a/recipes/bioconductor-cnanorm/meta.yaml
+++ b/recipes/bioconductor-cnanorm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.1" %}
+{% set version = "1.48.0" %}
 {% set name = "CNAnorm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 77feee7f1c624b8b4e380198d923e23c
+  md5: b9d0f995f3466875285a152415863842
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cnanorm", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
     - r-base
   build:
     - {{ compiler('c') }}
@@ -35,11 +36,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-2
+  license: 'GPL-2-only'
   summary: 'A normalization method for Copy Number Aberration in cancer samples'
   description: 'Performs ratio, GC content correction and normalization of data obtained using low coverage (one read every 100-10,000 bp) high troughput sequencing. It performs a "discrete" normalization looking for the ploidy of the genome. It will also provide tumour content if at least two ploidy states can be found.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:cnanorm
   parent_recipe:
diff --git a/recipes/bioconductor-cner/meta.yaml b/recipes/bioconductor-cner/meta.yaml
index 5363c676fcf79..107812a815c75 100644
--- a/recipes/bioconductor-cner/meta.yaml
+++ b/recipes/bioconductor-cner/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "CNEr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2382aa80af28d00b3f990268bf61bfbf
+  md5: 56fdc5f3323b1f3efbb8d85584ff75d2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cner", max_pin="x.x") }}'
 # Suggests: Gviz (>= 1.7.4), BiocStyle, knitr, rmarkdown, testthat, BSgenome.Drerio.UCSC.danRer10, BSgenome.Hsapiens.UCSC.hg38, TxDb.Drerio.UCSC.danRer10.refGene, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Ggallus.UCSC.galGal3
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - 'r-dbi >=0.7'
     - 'r-ggplot2 >=2.1.0'
@@ -43,18 +44,18 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - 'r-dbi >=0.7'
     - 'r-ggplot2 >=2.1.0'
diff --git a/recipes/bioconductor-cnordt/meta.yaml b/recipes/bioconductor-cnordt/meta.yaml
index 6259262861c0d..b6ac951b76ba2 100644
--- a/recipes/bioconductor-cnordt/meta.yaml
+++ b/recipes/bioconductor-cnordt/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "CNORdt" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: bd2389f6b262b0bf323ca0e49a20d3f4
+  md5: 74b0c2783638f7d5ce872577eb305ad3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cnordt", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-cellnoptr >=1.46.0,<1.47.0'
+    - 'bioconductor-cellnoptr >=1.48.0,<1.49.0'
     - r-abind
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-cellnoptr >=1.46.0,<1.47.0'
+    - 'bioconductor-cellnoptr >=1.48.0,<1.49.0'
     - r-abind
     - r-base
   build:
diff --git a/recipes/bioconductor-cnorfeeder/meta.yaml b/recipes/bioconductor-cnorfeeder/meta.yaml
index 3c97382193da2..5e8b159d1d8a6 100644
--- a/recipes/bioconductor-cnorfeeder/meta.yaml
+++ b/recipes/bioconductor-cnorfeeder/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "CNORfeeder" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0ba673e6af1ed038b14678843be82304
+  md5: 4dd8271e71505e41edc9509155cb4f9f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cnorfeeder", max_pin="x.x") }}'
   noarch: generic
 # Suggests: minet, Rgraphviz, RUnit, BiocGenerics, igraph
 requirements:
   host:
-    - 'bioconductor-cellnoptr >=1.46.0,<1.47.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-cellnoptr >=1.48.0,<1.49.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
   run:
-    - 'bioconductor-cellnoptr >=1.46.0,<1.47.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-cellnoptr >=1.48.0,<1.49.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-cnorfuzzy/meta.yaml b/recipes/bioconductor-cnorfuzzy/meta.yaml
index 3d5879dc204ed..7343bc5ed0dea 100644
--- a/recipes/bioconductor-cnorfuzzy/meta.yaml
+++ b/recipes/bioconductor-cnorfuzzy/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "CNORfuzzy" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c018031c48dc484ad32838a281083afe
+  md5: c7d388f25498f45c39d8af83c5e14a89
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cnorfuzzy", max_pin="x.x") }}'
 # Suggests: xtable, Rgraphviz, RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-cellnoptr >=1.46.0,<1.47.0'
+    - 'bioconductor-cellnoptr >=1.48.0,<1.49.0'
     - r-base
     - 'r-nloptr >=0.8.5'
     - libblas
     - liblapack
   run:
-    - 'bioconductor-cellnoptr >=1.46.0,<1.47.0'
+    - 'bioconductor-cellnoptr >=1.48.0,<1.49.0'
     - r-base
     - 'r-nloptr >=0.8.5'
   build:
diff --git a/recipes/bioconductor-cnorode/meta.yaml b/recipes/bioconductor-cnorode/meta.yaml
index 4f2da296035a0..7e2f238c23ba1 100644
--- a/recipes/bioconductor-cnorode/meta.yaml
+++ b/recipes/bioconductor-cnorode/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "CNORode" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f7b31713feb3c910b5bd09e105cb0a5d
+  md5: e93b3e3437c26f6cfab6690f78c6a6cc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cnorode", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-cellnoptr >=1.46.0,<1.47.0'
+    - 'bioconductor-cellnoptr >=1.48.0,<1.49.0'
     - r-base
     - r-genalg
     - r-knitr
     - libblas
     - liblapack
   run:
-    - 'bioconductor-cellnoptr >=1.46.0,<1.47.0'
+    - 'bioconductor-cellnoptr >=1.48.0,<1.49.0'
     - r-base
     - r-genalg
     - r-knitr
diff --git a/recipes/bioconductor-cntools/meta.yaml b/recipes/bioconductor-cntools/meta.yaml
index 436548a21c867..f19724490eaa7 100644
--- a/recipes/bioconductor-cntools/meta.yaml
+++ b/recipes/bioconductor-cntools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.56.0" %}
+{% set version = "1.58.0" %}
 {% set name = "CNTools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2f8beb8f9bd3721c978cb42536062279
+  md5: e3ce148937711a84dadf67b5f09c5373
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cntools", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-cnvfilter/meta.yaml b/recipes/bioconductor-cnvfilter/meta.yaml
index 04e1f13b266fe..3908bc6abda4c 100644
--- a/recipes/bioconductor-cnvfilter/meta.yaml
+++ b/recipes/bioconductor-cnvfilter/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "CNVfilteR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,40 +11,41 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fba99dc7e437235fee4a92960716f34f
+  md5: dda71463a83db8c7aaf1bbfa79424ba3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cnvfilter", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg19.masked, rmarkdown
+# Suggests: knitr, BiocStyle, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg19.masked, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-copynumberplots >=1.16.0,<1.17.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-karyoploter >=1.26.0,<1.27.0'
-    - 'bioconductor-regioner >=1.32.0,<1.33.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-copynumberplots >=1.18.0,<1.19.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-karyoploter >=1.28.0,<1.29.0'
+    - 'bioconductor-regioner >=1.34.0,<1.35.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-assertthat
     - r-base
     - r-pracma
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-copynumberplots >=1.16.0,<1.17.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-karyoploter >=1.26.0,<1.27.0'
-    - 'bioconductor-regioner >=1.32.0,<1.33.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-copynumberplots >=1.18.0,<1.19.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-karyoploter >=1.28.0,<1.29.0'
+    - 'bioconductor-regioner >=1.34.0,<1.35.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-assertthat
     - r-base
     - r-pracma
diff --git a/recipes/bioconductor-cnvgsa/meta.yaml b/recipes/bioconductor-cnvgsa/meta.yaml
index b7846884afed1..b0cf597118eb0 100644
--- a/recipes/bioconductor-cnvgsa/meta.yaml
+++ b/recipes/bioconductor-cnvgsa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.44.0" %}
+{% set version = "1.46.0" %}
 {% set name = "cnvGSA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f98d6c70fbf31cfb8cd3282cabffce4f
+  md5: b3216442e27ff2c602e908aeb6a6f6e7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cnvgsa", max_pin="x.x") }}'
   noarch: generic
 # Suggests: cnvGSAdata, org.Hs.eg.db
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-brglm
     - r-doparallel
     - r-foreach
     - r-splitstackshape
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-brglm
     - r-doparallel
diff --git a/recipes/bioconductor-cnvgsadata/meta.yaml b/recipes/bioconductor-cnvgsadata/meta.yaml
index 2cd90be972d1f..cea79ff073286 100644
--- a/recipes/bioconductor-cnvgsadata/meta.yaml
+++ b/recipes/bioconductor-cnvgsadata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "cnvGSAdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 706bef72dd4c818adc1295a3f93bd2cf
+  md5: 1cc86a2066cae55493d710c475cc7112
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cnvgsadata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-cnvgsa >=1.44.0,<1.45.0'
+    - 'bioconductor-cnvgsa >=1.46.0,<1.47.0'
     - r-base
   run:
-    - 'bioconductor-cnvgsa >=1.44.0,<1.45.0'
+    - 'bioconductor-cnvgsa >=1.46.0,<1.47.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-cnvgsadata/post-link.sh b/recipes/bioconductor-cnvgsadata/post-link.sh
index c07e462f3f5e4..068b0cb6fee2b 100644
--- a/recipes/bioconductor-cnvgsadata/post-link.sh
+++ b/recipes/bioconductor-cnvgsadata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "cnvgsadata-1.36.0"
+installBiocDataPackage.sh "cnvgsadata-1.38.0"
diff --git a/recipes/bioconductor-cnviz/meta.yaml b/recipes/bioconductor-cnviz/meta.yaml
index 30708fe0762b3..000ef56911ecf 100644
--- a/recipes/bioconductor-cnviz/meta.yaml
+++ b/recipes/bioconductor-cnviz/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "CNViz" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1f269c211d1f940ae3e019441ca4ec85
+  md5: e0499b53c29869a1f661e40f4e1f76ca
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cnviz", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, knitr
 requirements:
   host:
-    - 'bioconductor-copynumberplots >=1.16.0,<1.17.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-karyoploter >=1.26.0,<1.27.0'
+    - 'bioconductor-copynumberplots >=1.18.0,<1.19.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-karyoploter >=1.28.0,<1.29.0'
     - r-base
     - r-dplyr
     - r-dt
@@ -32,9 +33,9 @@ requirements:
     - r-scales
     - 'r-shiny >=1.5.0'
   run:
-    - 'bioconductor-copynumberplots >=1.16.0,<1.17.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-karyoploter >=1.26.0,<1.27.0'
+    - 'bioconductor-copynumberplots >=1.18.0,<1.19.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-karyoploter >=1.28.0,<1.29.0'
     - r-base
     - r-dplyr
     - r-dt
diff --git a/recipes/bioconductor-cnvmetrics/meta.yaml b/recipes/bioconductor-cnvmetrics/meta.yaml
index 7b477048e9c84..5a6a3e47ff376 100644
--- a/recipes/bioconductor-cnvmetrics/meta.yaml
+++ b/recipes/bioconductor-cnvmetrics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "CNVMetrics" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1d745a88974ac4ec80fced32581c02fe
+  md5: ebb4f847744aaddcc125d870b1a67154
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cnvmetrics", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-gridextra
     - r-magrittr
     - r-pheatmap
+    - r-rbeta2009
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-gridextra
     - r-magrittr
     - r-pheatmap
+    - r-rbeta2009
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-cnvpanelizer/meta.yaml b/recipes/bioconductor-cnvpanelizer/meta.yaml
index abc49fe1ceaeb..3af7fd5235897 100644
--- a/recipes/bioconductor-cnvpanelizer/meta.yaml
+++ b/recipes/bioconductor-cnvpanelizer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "CNVPanelizer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: bc8f796d0a9a70d1047059939acaef89
+  md5: 1d984f2fa3f3db99f3ccf72b5c9a0890
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cnvpanelizer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, RUnit
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-exomecopy >=1.46.0,<1.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-noiseq >=2.44.0,<2.45.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-exomecopy >=1.48.0,<1.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-noiseq >=2.46.0,<2.47.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-foreach
     - r-ggplot2
@@ -42,14 +43,14 @@ requirements:
     - r-stringr
     - r-testthat
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-exomecopy >=1.46.0,<1.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-noiseq >=2.44.0,<2.45.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-exomecopy >=1.48.0,<1.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-noiseq >=2.46.0,<2.47.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-foreach
     - r-ggplot2
diff --git a/recipes/bioconductor-cnvranger/meta.yaml b/recipes/bioconductor-cnvranger/meta.yaml
index 816e951bed0f6..cba6dd7a6a6ec 100644
--- a/recipes/bioconductor-cnvranger/meta.yaml
+++ b/recipes/bioconductor-cnvranger/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.4" %}
+{% set version = "1.18.0" %}
 {% set name = "CNVRanger" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fba593b7facaf4bad0bbd16b64b41830
+  md5: 3e68952c47447dfad311d1adf7b971d1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cnvranger", max_pin="x.x") }}'
   noarch: generic
 # Suggests: AnnotationHub, BSgenome.Btaurus.UCSC.bosTau6.masked, BiocStyle, ComplexHeatmap, Gviz, MultiAssayExperiment, TCGAutils, TxDb.Hsapiens.UCSC.hg19.knownGene, curatedTCGAData, ensembldb, grid, knitr, org.Hs.eg.db, regioneR, rmarkdown, statmod
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-gdsarray >=1.20.0,<1.21.0'
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-raggedexperiment >=1.24.0,<1.25.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-snprelate >=1.34.0,<1.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-gdsarray >=1.22.0,<1.23.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-raggedexperiment >=1.26.0,<1.27.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-snprelate >=1.36.0,<1.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-lattice
@@ -42,19 +43,19 @@ requirements:
     - r-rappdirs
     - r-reshape2
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-gdsarray >=1.20.0,<1.21.0'
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-raggedexperiment >=1.24.0,<1.25.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-snprelate >=1.34.0,<1.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-gdsarray >=1.22.0,<1.23.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-raggedexperiment >=1.26.0,<1.27.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-snprelate >=1.36.0,<1.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-lattice
diff --git a/recipes/bioconductor-cnvrd2/meta.yaml b/recipes/bioconductor-cnvrd2/meta.yaml
index 60e0572097bea..85d6f7fae13aa 100644
--- a/recipes/bioconductor-cnvrd2/meta.yaml
+++ b/recipes/bioconductor-cnvrd2/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "CNVrd2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e8eafc38f592bd7322d9f4e8fd12a598
+  md5: 9cc2c933a0a521472b5eb6f1382cefd5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cnvrd2", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
   host:
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-ggplot2
     - r-gridextra
     - r-rjags
   run:
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-ggplot2
     - r-gridextra
diff --git a/recipes/bioconductor-cocitestats/meta.yaml b/recipes/bioconductor-cocitestats/meta.yaml
index 26df6d2a2141c..5c72102058add 100644
--- a/recipes/bioconductor-cocitestats/meta.yaml
+++ b/recipes/bioconductor-cocitestats/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "CoCiteStats" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2129b78957087707546562a0934e738a
+  md5: de358f1bd9429dbedc2e7bc91037373a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cocitestats", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-cocoa/meta.yaml b/recipes/bioconductor-cocoa/meta.yaml
index 2da84c65e4b84..f61f932994f3b 100644
--- a/recipes/bioconductor-cocoa/meta.yaml
+++ b/recipes/bioconductor-cocoa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.14.0" %}
+{% set version = "2.16.0" %}
 {% set name = "COCOA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 528e8eb1e1a358866292395b64570c61
+  md5: 6525a033b4b6ab78aa4ecb8e3f35b6e3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cocoa", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, parallel, testthat, BiocStyle, rmarkdown, AnnotationHub, LOLA
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-mira >=1.22.0,<1.23.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-mira >=1.24.0,<1.25.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-fitdistrplus
@@ -35,13 +36,13 @@ requirements:
     - r-simplecache
     - r-tidyr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-mira >=1.22.0,<1.23.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-mira >=1.24.0,<1.25.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-fitdistrplus
@@ -57,4 +58,3 @@ about:
   summary: 'Coordinate Covariation Analysis'
   description: 'COCOA is a method for understanding epigenetic variation among samples. COCOA can be used with epigenetic data that includes genomic coordinates and an epigenetic signal, such as DNA methylation and chromatin accessibility data. To describe the method on a high level, COCOA quantifies inter-sample variation with either a supervised or unsupervised technique then uses a database of "region sets" to annotate the variation among samples. A region set is a set of genomic regions that share a biological annotation, for instance transcription factor (TF) binding regions, histone modification regions, or open chromatin regions. COCOA can identify region sets that are associated with epigenetic variation between samples and increase understanding of variation in your data.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
-
diff --git a/recipes/bioconductor-codelink/meta.yaml b/recipes/bioconductor-codelink/meta.yaml
index c83b6b10126cb..5aa4146f8d961 100644
--- a/recipes/bioconductor-codelink/meta.yaml
+++ b/recipes/bioconductor-codelink/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.68.0" %}
+{% set version = "1.70.0" %}
 {% set name = "codelink" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 35d35231bf21b1815e02271098872c05
+  md5: 7988c997146174710b5faacc70c10328
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-codelink", max_pin="x.x") }}'
   noarch: generic
 # Suggests: genefilter, parallel, knitr
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-codex/meta.yaml b/recipes/bioconductor-codex/meta.yaml
index dd3350d1a11ec..0b4bb41c7a4db 100644
--- a/recipes/bioconductor-codex/meta.yaml
+++ b/recipes/bioconductor-codex/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "CODEX" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ee6fc5514b4d8982f0d639c34c589b9f
+  md5: 5b1f67c5fbf4bbe4a3ee4f6da956a886
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-codex", max_pin="x.x") }}'
   noarch: generic
 # Suggests: WES.1KG.WUGSC
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-cogaps/meta.yaml b/recipes/bioconductor-cogaps/meta.yaml
index f8b21e0ae36c9..c891b02938f1c 100644
--- a/recipes/bioconductor-cogaps/meta.yaml
+++ b/recipes/bioconductor-cogaps/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.19.1" %}
+{% set version = "3.22.0" %}
 {% set name = "CoGAPS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 22a7d6bb9033c0a2d4c1170856b87b06
+  md5: d4c9ec9b2be6c77fbb47c632b62c84b4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
-# Suggests: testthat, knitr, rmarkdown, BiocStyle
+  run_exports: '{{ pin_subpackage("bioconductor-cogaps", max_pin="x.x") }}'
+# Suggests: testthat, knitr, rmarkdown, BiocStyle, SeuratObject
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bh
     - r-cluster
@@ -40,13 +41,13 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bh
     - r-cluster
diff --git a/recipes/bioconductor-cogena/meta.yaml b/recipes/bioconductor-cogena/meta.yaml
index e57e9a3bcf655..ea4472b90f122 100644
--- a/recipes/bioconductor-cogena/meta.yaml
+++ b/recipes/bioconductor-cogena/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "cogena" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 6d25c8d1515cc3b06d4337a28819ea16
+  md5: 47a50e5f5d62a9b2f6fcd7bf3f5b9cc6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cogena", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown (>= 2.1)
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-amap
     - r-apcluster
     - r-base
@@ -43,7 +44,7 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-amap
     - r-apcluster
     - r-base
diff --git a/recipes/bioconductor-cogeqc/meta.yaml b/recipes/bioconductor-cogeqc/meta.yaml
index b39477688806a..49d2616f6027b 100644
--- a/recipes/bioconductor-cogeqc/meta.yaml
+++ b/recipes/bioconductor-cogeqc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "cogeqc" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 2a92798147ae38ee7e618149ffabcdf5
+  md5: 751833fc95e416546193b021e0cbfc69
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cogeqc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 3.0.0), sessioninfo, knitr, BiocStyle, rmarkdown, covr
 # SystemRequirements: BUSCO (>= 5.1.3) <https://busco.ezlab.org/>
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
     - r-base
     - r-ggbeeswarm
     - r-ggplot2
@@ -34,8 +35,8 @@ requirements:
     - r-rlang
     - r-scales
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
     - r-base
     - r-ggbeeswarm
     - r-ggplot2
diff --git a/recipes/bioconductor-cogito/meta.yaml b/recipes/bioconductor-cogito/meta.yaml
index c2faac70f8f75..85a806043f509 100644
--- a/recipes/bioconductor-cogito/meta.yaml
+++ b/recipes/bioconductor-cogito/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "Cogito" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 436e9cbf49b6a9fbe470772048229db3
+  md5: 934ceee8a56ab742bbf3c09af96cb2ba
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cogito", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, markdown, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'bioconductor-txdb.mmusculus.ucsc.mm9.knowngene >=3.2.0,<3.3.0'
     - r-base
     - r-biocmanager
@@ -35,11 +36,11 @@ requirements:
     - r-magrittr
     - r-rmarkdown
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'bioconductor-txdb.mmusculus.ucsc.mm9.knowngene >=3.2.0,<3.3.0'
     - r-base
     - r-biocmanager
diff --git a/recipes/bioconductor-cogps/meta.yaml b/recipes/bioconductor-cogps/meta.yaml
index cef7325cc9a13..558d1ed731974 100644
--- a/recipes/bioconductor-cogps/meta.yaml
+++ b/recipes/bioconductor-cogps/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.44.0" %}
+{% set version = "1.46.0" %}
 {% set name = "coGPS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2836cad04f3b94cbe305cacaaaee6570
+  md5: a824d8a41fee47628eb7f369adef4a2c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cogps", max_pin="x.x") }}'
   noarch: generic
 # Suggests: limma
 requirements:
diff --git a/recipes/bioconductor-cohcap/meta.yaml b/recipes/bioconductor-cohcap/meta.yaml
index 56afd1c45e2a5..6e92de0db8803 100644
--- a/recipes/bioconductor-cohcap/meta.yaml
+++ b/recipes/bioconductor-cohcap/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "COHCAP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,16 +11,17 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7c6563694a4c95720c88bcc4df639f28
+  md5: 6c7c601f8c8aee626d2fa1a6dd306dca
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cohcap", max_pin="x.x") }}'
 # SystemRequirements: Perl
 requirements:
   host:
-    - 'bioconductor-cohcapanno >=1.36.0,<1.37.0'
+    - 'bioconductor-cohcapanno >=1.38.0,<1.39.0'
     - r-base
     - r-bh
     - r-gplots
@@ -32,7 +33,7 @@ requirements:
     - liblapack
     - 'perl >=5.6.0'
   run:
-    - 'bioconductor-cohcapanno >=1.36.0,<1.37.0'
+    - 'bioconductor-cohcapanno >=1.38.0,<1.39.0'
     - r-base
     - r-bh
     - r-gplots
@@ -50,11 +51,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-3
+  license: GPL-3.0-only
   summary: 'CpG Island Analysis Pipeline for Illumina Methylation Array and Targeted BS-Seq Data'
   description: 'COHCAP (pronounced "co-cap") provides a pipeline to analyze single-nucleotide resolution methylation data (Illumina 450k/EPIC methylation array, targeted BS-Seq, etc.). It provides differential methylation for CpG Sites, differential methylation for CpG Islands, integration with gene expression data, with visualizaton options. Discussion Group: https://sourceforge.net/p/cohcap/discussion/bioconductor/'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:cohcap
   parent_recipe:
diff --git a/recipes/bioconductor-cohcapanno/meta.yaml b/recipes/bioconductor-cohcapanno/meta.yaml
index b42c2e9817598..4c64d0e2c842f 100644
--- a/recipes/bioconductor-cohcapanno/meta.yaml
+++ b/recipes/bioconductor-cohcapanno/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "COHCAPanno" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d95f164282852d44cc982e461157b622
+  md5: 78fd4891651a8a62779fe402a13ba6b1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cohcapanno", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-cohcapanno/post-link.sh b/recipes/bioconductor-cohcapanno/post-link.sh
index 5ae5b6c9dbbe4..4b2b9b6c06bfa 100644
--- a/recipes/bioconductor-cohcapanno/post-link.sh
+++ b/recipes/bioconductor-cohcapanno/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "cohcapanno-1.36.0"
+installBiocDataPackage.sh "cohcapanno-1.38.0"
diff --git a/recipes/bioconductor-cola/meta.yaml b/recipes/bioconductor-cola/meta.yaml
index 11f671e63f537..f5913bc74f273 100644
--- a/recipes/bioconductor-cola/meta.yaml
+++ b/recipes/bioconductor-cola/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.6.0" %}
+{% set version = "2.8.0" %}
 {% set name = "cola" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 983ec7f83e64be0637f134ca3576c106
+  md5: 57e054e12610fb8d62de83c22f6ed1de
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cola", max_pin="x.x") }}'
 # Suggests: genefilter, mvtnorm, testthat (>= 0.3), samr, pamr, kohonen, NMF, WGCNA, Rtsne, umap, clusterProfiler, ReactomePA, DOSE, AnnotationDbi, gplots, hu6800.db, BiocManager, data.tree, dendextend, Polychrome, rmarkdown, simplifyEnrichment, cowplot, flexclust, randomForest, e1071
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
     - r-base
     - r-brew
     - 'r-circlize >=0.4.7'
@@ -51,9 +52,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
     - r-base
     - r-brew
     - 'r-circlize >=0.4.7'
diff --git a/recipes/bioconductor-colonca/meta.yaml b/recipes/bioconductor-colonca/meta.yaml
index 1a0fd696e7055..642bf020f6e11 100644
--- a/recipes/bioconductor-colonca/meta.yaml
+++ b/recipes/bioconductor-colonca/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "colonCA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 88a73e6339cf99f42858ddcb073c4e61
+  md5: d12f03a7ded676f392dbbb26bbbef174
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-colonca", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-colonca/post-link.sh b/recipes/bioconductor-colonca/post-link.sh
index ab2079c657c89..63e3e55b7a7a0 100644
--- a/recipes/bioconductor-colonca/post-link.sh
+++ b/recipes/bioconductor-colonca/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "colonca-1.42.0"
+installBiocDataPackage.sh "colonca-1.44.0"
diff --git a/recipes/bioconductor-comapr/meta.yaml b/recipes/bioconductor-comapr/meta.yaml
index a4f6549c9f2c1..130fa29cd2cd1 100644
--- a/recipes/bioconductor-comapr/meta.yaml
+++ b/recipes/bioconductor-comapr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.1" %}
 {% set name = "comapr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: eca7d37960ffea05ade6ed24636d08ff
+  md5: 64dbcfb7f563dc874dc327988ebf8c07
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-comapr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 2.1.0), statmod
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-dplyr
@@ -43,13 +44,13 @@ requirements:
     - r-scales
     - r-tidyr
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-dplyr
diff --git a/recipes/bioconductor-combi/meta.yaml b/recipes/bioconductor-combi/meta.yaml
index 7bccb67dc97cd..9998659a07a49 100644
--- a/recipes/bioconductor-combi/meta.yaml
+++ b/recipes/bioconductor-combi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "combi" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,43 +11,44 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 2b81ee7cc0b92f982a363f54d42d62dd
+  md5: 6fe16559db40b31126eb543abf6819fa
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-combi", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-alabama
     - r-base
     - r-bb
     - r-cobs
     - r-dbi
     - r-ggplot2
-    - r-matrix
+    - 'r-matrix >=1.6.0'
     - r-nleqslv
     - r-reshape2
     - r-tensor
     - r-vegan
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-alabama
     - r-base
     - r-bb
     - r-cobs
     - r-dbi
     - r-ggplot2
-    - r-matrix
+    - 'r-matrix >=1.6.0'
     - r-nleqslv
     - r-reshape2
     - r-tensor
diff --git a/recipes/bioconductor-comet/meta.yaml b/recipes/bioconductor-comet/meta.yaml
index 11290e90520bd..8ba6a888a5ef3 100644
--- a/recipes/bioconductor-comet/meta.yaml
+++ b/recipes/bioconductor-comet/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "coMET" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d1cbe82dc9eccd6c98d091a7c46516e0
+  md5: 34ef806a15489ccd38abd9002fe075ed
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-comet", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, RUnit, BiocGenerics, showtext
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-corrplot
     - r-gridextra
     - r-hash
     - r-psych
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-corrplot
     - r-gridextra
diff --git a/recipes/bioconductor-comethdmr/meta.yaml b/recipes/bioconductor-comethdmr/meta.yaml
index 52616731a8f9d..710278af6f46a 100644
--- a/recipes/bioconductor-comethdmr/meta.yaml
+++ b/recipes/bioconductor-comethdmr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "coMethDMR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 625273089317239e835e4d368f579230
+  md5: 0a6229d90868a4a60eb0f72c4499d1fc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-comethdmr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, corrplot, knitr, rmarkdown, testthat, IlluminaHumanMethylation450kanno.ilmn12.hg19, IlluminaHumanMethylationEPICanno.ilm10b4.hg19
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-bumphunter >=1.42.0,<1.43.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-bumphunter >=1.44.0,<1.45.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-lmertest
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-bumphunter >=1.42.0,<1.43.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-bumphunter >=1.44.0,<1.45.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-lmertest
 test:
diff --git a/recipes/bioconductor-compass/meta.yaml b/recipes/bioconductor-compass/meta.yaml
index 9919fb7c6de16..7b4d01bdbc668 100644
--- a/recipes/bioconductor-compass/meta.yaml
+++ b/recipes/bioconductor-compass/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.1" %}
+{% set version = "1.40.0" %}
 {% set name = "COMPASS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,16 +11,17 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cd27c24d1296f22f905ca0533581224a
+  md5: 6ab4a9ce40637244377f77b7baaecc38
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-compass", max_pin="x.x") }}'
 # Suggests: flowWorkspace (>= 3.33.1), flowCore, ncdfFlow, shiny, testthat, devtools, flowWorkspaceData, ggplot2, progress
 requirements:
   host:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
     - r-abind
     - r-base
     - r-clue
@@ -42,7 +43,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
     - r-abind
     - r-base
     - r-clue
@@ -74,6 +75,8 @@ about:
   summary: 'Combinatorial Polyfunctionality Analysis of Single Cells'
   description: 'COMPASS is a statistical framework that enables unbiased analysis of antigen-specific T-cell subsets. COMPASS uses a Bayesian hierarchical framework to model all observed cell-subsets and select the most likely to be antigen-specific while regularizing the small cell counts that often arise in multi-parameter space. The model provides a posterior probability of specificity for each cell subset and each sample, which can be used to profile a subject''s immune response to external stimuli such as infection or vaccination.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:compass
     - doi:10.1038/nbt.3187
diff --git a/recipes/bioconductor-compcoder/meta.yaml b/recipes/bioconductor-compcoder/meta.yaml
index 7c614b91c9c83..5cc77115da02b 100644
--- a/recipes/bioconductor-compcoder/meta.yaml
+++ b/recipes/bioconductor-compcoder/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.2" %}
+{% set version = "1.38.0" %}
 {% set name = "compcodeR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ceef6dc14644528d10b8b0549ddd8cdb
+  md5: b1ec77496e614cf3399843b8c34e6ab2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-compcoder", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BiocStyle, EBSeq, DESeq2 (>= 1.1.31), baySeq (>= 2.2.0), genefilter, NOISeq, TCC, NBPSeq (>= 0.3.0), rmarkdown, phytools, phangorn, testthat, ggtree, tidytree, statmod, covr, sva
+# Suggests: BiocStyle, EBSeq, DESeq2 (>= 1.1.31), genefilter, NOISeq, TCC, NBPSeq (>= 0.3.0), phytools, phangorn, testthat, ggtree, tidytree, statmod, covr, sva, tcltk
 requirements:
   host:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-ape
     - r-base
     - r-catools
@@ -37,13 +38,16 @@ requirements:
     - r-matrixstats
     - r-modeest
     - r-phylolm
+    - r-rmarkdown
     - r-rocr
+    - r-shiny
+    - r-shinydashboard
     - r-sm
     - r-stringr
     - r-vioplot
   run:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-ape
     - r-base
     - r-catools
@@ -58,7 +62,10 @@ requirements:
     - r-matrixstats
     - r-modeest
     - r-phylolm
+    - r-rmarkdown
     - r-rocr
+    - r-shiny
+    - r-shinydashboard
     - r-sm
     - r-stringr
     - r-vioplot
diff --git a/recipes/bioconductor-compepitools/meta.yaml b/recipes/bioconductor-compepitools/meta.yaml
index 10f4dce2ea032..df49a8380538b 100644
--- a/recipes/bioconductor-compepitools/meta.yaml
+++ b/recipes/bioconductor-compepitools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.1" %}
+{% set version = "1.36.0" %}
 {% set name = "compEpiTools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,45 +11,46 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4073e61c47740e5f0c48db76dfb4b91c
+  md5: 0ccd28b8de6020ae19f303fc7009ce19
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-compepitools", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene, org.Mm.eg.db, knitr, rtracklayer
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-methylpipe >=1.34.0,<1.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-methylpipe >=1.36.0,<1.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-gplots
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-methylpipe >=1.34.0,<1.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-methylpipe >=1.36.0,<1.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-gplots
 test:
diff --git a/recipes/bioconductor-complexheatmap/meta.yaml b/recipes/bioconductor-complexheatmap/meta.yaml
index 24486629fc4bb..e97a5929f5d7d 100644
--- a/recipes/bioconductor-complexheatmap/meta.yaml
+++ b/recipes/bioconductor-complexheatmap/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.16.0" %}
+{% set version = "2.18.0" %}
 {% set name = "ComplexHeatmap" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 87feece17236af22e1d3ad35e3fb7efd
+  md5: f4f19a1339c99471cb23ffc4a7272881
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-complexheatmap", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort, jpeg, tiff, fastcluster, EnrichedHeatmap, dendextend (>= 1.0.1), grImport, grImport2, glue, GenomicRanges, gridtext, pheatmap (>= 1.0.12), gridGraphics, gplots, rmarkdown, Cairo, magick
 requirements:
   host:
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - 'r-circlize >=0.4.14'
     - r-clue
@@ -36,7 +37,7 @@ requirements:
     - r-png
     - r-rcolorbrewer
   run:
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - 'r-circlize >=0.4.14'
     - r-clue
diff --git a/recipes/bioconductor-compounddb/meta.yaml b/recipes/bioconductor-compounddb/meta.yaml
index 71c955494be81..6c581d53b553f 100644
--- a/recipes/bioconductor-compounddb/meta.yaml
+++ b/recipes/bioconductor-compounddb/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "CompoundDb" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 38742446decc04a230b9f43055145158
+  md5: 7863bdbb64d2068c22225ece8ed5844c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-compounddb", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, BiocStyle (>= 2.5.19), MsBackendMgf
 requirements:
   host:
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-chemminer >=3.52.0,<3.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-metabocoreutils >=1.8.0,<1.9.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-spectra >=1.10.0,<1.11.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-chemminer >=3.54.0,<3.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-metabocoreutils >=1.10.0,<1.11.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spectra >=1.12.0,<1.13.0'
     - r-base
     - r-dbi
     - r-dbplyr
@@ -41,17 +42,17 @@ requirements:
     - r-tibble
     - r-xml2
   run:
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-chemminer >=3.52.0,<3.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-metabocoreutils >=1.8.0,<1.9.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-spectra >=1.10.0,<1.11.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-chemminer >=3.54.0,<3.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-metabocoreutils >=1.10.0,<1.11.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spectra >=1.12.0,<1.13.0'
     - r-base
     - r-dbi
     - r-dbplyr
diff --git a/recipes/bioconductor-compran/meta.yaml b/recipes/bioconductor-compran/meta.yaml
index 1a13f4a07dfb8..487b8ff516290 100644
--- a/recipes/bioconductor-compran/meta.yaml
+++ b/recipes/bioconductor-compran/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "ComPrAn" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 41183d8093e3f4a754c7eac6a666993e
+  md5: 24011dcffe9f6c7b22be8e2de0e855b4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-compran", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 2.1.0), knitr, rmarkdown
 requirements:
diff --git a/recipes/bioconductor-compspot/build.sh b/recipes/bioconductor-compspot/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-compspot/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-compspot/meta.yaml b/recipes/bioconductor-compspot/meta.yaml
new file mode 100644
index 0000000000000..c735ad00891b4
--- /dev/null
+++ b/recipes/bioconductor-compspot/meta.yaml
@@ -0,0 +1,48 @@
+{% set version = "1.0.0" %}
+{% set name = "compSPOT" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 7aa69c9c3ec0c008ad0fdfb4dbbcac57
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-compspot", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
+requirements:
+  host:
+    - r-base
+    - r-data.table
+    - r-ggplot2
+    - r-ggpubr
+    - r-gridextra
+    - r-magrittr
+    - r-plotly
+  run:
+    - r-base
+    - r-data.table
+    - r-ggplot2
+    - r-ggpubr
+    - r-gridextra
+    - r-magrittr
+    - r-plotly
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'compSPOT: Tool for identifying and comparing significantly mutated genomic hotspots'
+  description: 'Clonal cell groups share common mutations within cancer, precancer, and even clinically normal appearing tissues. The frequency and location of these mutations may predict prognosis and cancer risk. It has also been well established that certain genomic regions have increased sensitivity to acquiring mutations. Mutation-sensitive genomic regions may therefore serve as markers for predicting cancer risk. This package contains multiple functions to establish significantly mutated hotspots, compare hotspot mutation burden between samples, and perform exploratory data analysis of the correlation between hotspot mutation burden and personal risk factors for cancer, such as age, gender, and history of carcinogen exposure. This package allows users to identify robust genomic markers to help establish cancer risk.'
+
diff --git a/recipes/bioconductor-concordexr/meta.yaml b/recipes/bioconductor-concordexr/meta.yaml
index 26925b4bf5159..16a7d13375823 100644
--- a/recipes/bioconductor-concordexr/meta.yaml
+++ b/recipes/bioconductor-concordexr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "concordexR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8a83636d355e3b226da6f6030c17d84d
+  md5: 5ffab81582264ccb300c9f937c698adf
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-concordexr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocNeighbors, BiocStyle, bluster, covr, knitr, patchwork, rmarkdown, scater, TENxPBMCData, testthat (>= 3.0.0), vdiffr
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
     - r-base
     - r-cli
     - r-ggplot2
@@ -31,8 +32,8 @@ requirements:
     - r-rlang
     - r-scales
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
     - r-base
     - r-cli
     - r-ggplot2
diff --git a/recipes/bioconductor-condiments/build_failure.linux-64.yaml b/recipes/bioconductor-condiments/build_failure.linux-64.yaml
new file mode 100644
index 0000000000000..64bb7869e9bff
--- /dev/null
+++ b/recipes/bioconductor-condiments/build_failure.linux-64.yaml
@@ -0,0 +1,104 @@
+recipe_sha: d70ad20d6aa8d5ec24cc58bdae0002e9ce657a5241a612189057a31a9a2b5902  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+log: |2-
+   - bioconductor-distinct >=1.14.0,<1.15.0
+   - r-ecume >=0.9.1
+   - bioconductor-summarizedexperiment >=1.32.0,<1.33.0
+   - r-mgcv
+   - bioconductor-slingshot >=2.10.0,<2.11.0
+   - bioconductor-biocparallel >=1.36.0,<1.37.0
+   - r-matrixstats
+   - r-base 4.3.*
+   - r-rann
+
+  with channels:
+   - file:///opt/host-conda-bld
+   - conda-forge
+   - bioconda
+   - defaults
+
+  The reported errors are:
+  - Encountered problems while solving:
+  -   - nothing provides requested bioconductor-distinct >=1.14.0,<1.15.0
+  -
+
+  Leaving build/test directories:
+    Work:
+   /opt/conda/conda-bld/work
+    Test:
+   /opt/conda/conda-bld/test_tmp
+  Leaving build/test environments:
+    Test:
+  source activate  /opt/conda/conda-bld/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl
+    Build:
+  source activate  /opt/conda/conda-bld/_build_env
+
+
+  Traceback (most recent call last):
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 141, in mamba_get_install_actions
+      solution = solver.solve_for_action(_specs, prefix)
+    File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 244, in solve_for_action
+      t = self.solve(specs)
+    File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 234, in solve
+      raise RuntimeError("Solver could not find solution."  error_string)
+  RuntimeError: Solver could not find solution.Mamba failed to solve:
+   - r-pbapply
+   - r-igraph
+   - r-magrittr
+   - r-dplyr >=1.0
+   - bioconductor-trajectoryutils >=1.10.0,<1.11.0
+   - bioconductor-singlecellexperiment >=1.24.0,<1.25.0
+   - bioconductor-distinct >=1.14.0,<1.15.0
+   - r-ecume >=0.9.1
+   - bioconductor-summarizedexperiment >=1.32.0,<1.33.0
+   - r-mgcv
+   - bioconductor-slingshot >=2.10.0,<2.11.0
+   - bioconductor-biocparallel >=1.36.0,<1.37.0
+   - r-matrixstats
+   - r-base 4.3.*
+   - r-rann
+
+  with channels:
+   - file:///opt/host-conda-bld
+   - conda-forge
+   - bioconda
+   - defaults
+
+  The reported errors are:
+  - Encountered problems while solving:
+  -   - nothing provides requested bioconductor-distinct >=1.14.0,<1.15.0
+  -
+
+  During handling of the above exception, another exception occurred:
+
+  Traceback (most recent call last):
+    File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
+      sys.exit(main())
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
+      call_conda_build(action, config)
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
+      result = api.build(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
+      return build_tree(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
+      packages_from_this = build(metadata, stats,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2038, in build
+      output_metas = expand_outputs([(m, need_source_download, need_reparse_in_env)])
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 787, in expand_outputs
+      for (output_dict, m) in deepcopy(_m).get_output_metadata_set(permit_unsatisfiable_variants=False):
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/metadata.py", line 2524, in get_output_metadata_set
+      conda_packages = finalize_outputs_pass(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/metadata.py", line 884, in finalize_outputs_pass
+      fm = finalize_metadata(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 547, in finalize_metadata
+      build_unsat, host_unsat = add_upstream_pins(m,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 409, in add_upstream_pins
+      host_deps, host_unsat, extra_run_specs_from_host = _read_upstream_pin_files(m, 'host',
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 374, in _read_upstream_pin_files
+      deps, actions, unsat = get_env_dependencies(m, env, m.config.variant,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 131, in get_env_dependencies
+      actions = environ.get_install_actions(tmpdir, tuple(dependencies), env,
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 150, in mamba_get_install_actions
+      raise err
+  conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("bioconductor-distinct[version='>=1.14.0,<1.15.0']")}
+# Last 100 lines of the build log.
diff --git a/recipes/bioconductor-condiments/meta.yaml b/recipes/bioconductor-condiments/meta.yaml
index 752243104b7c8..c6cceadc411f7 100644
--- a/recipes/bioconductor-condiments/meta.yaml
+++ b/recipes/bioconductor-condiments/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "condiments" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 34ccc7d55f139c0c225b31f5a4d6d54e
+  md5: 63b9756275a532e7d38c67402cef7efd
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-condiments", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, rmarkdown, covr, viridis, ggplot2, RColorBrewer, randomForest, tidyr, TSCAN
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-distinct >=1.12.0,<1.13.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-slingshot >=2.8.0,<2.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-trajectoryutils >=1.8.0,<1.9.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-distinct >=1.14.0,<1.15.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-slingshot >=2.10.0,<2.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-trajectoryutils >=1.10.0,<1.11.0'
     - r-base
     - 'r-dplyr >=1.0'
     - 'r-ecume >=0.9.1'
@@ -37,12 +38,12 @@ requirements:
     - r-pbapply
     - r-rann
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-distinct >=1.12.0,<1.13.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-slingshot >=2.8.0,<2.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-trajectoryutils >=1.8.0,<1.9.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-distinct >=1.14.0,<1.15.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-slingshot >=2.10.0,<2.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-trajectoryutils >=1.10.0,<1.11.0'
     - r-base
     - 'r-dplyr >=1.0'
     - 'r-ecume >=0.9.1'
diff --git a/recipes/bioconductor-confess/meta.yaml b/recipes/bioconductor-confess/meta.yaml
index bfc0aec5efc7d..6e7de11118b8b 100644
--- a/recipes/bioconductor-confess/meta.yaml
+++ b/recipes/bioconductor-confess/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "CONFESS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7778073e6c190fe4ce709a28cd0c644e
+  md5: 67bd1d40551528aab55620fc0a619713
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-confess", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, CONFESSdata
 requirements:
   host:
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-flowclust >=3.38.0,<3.39.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowmeans >=1.60.0,<1.61.0'
-    - 'bioconductor-flowmerge >=2.48.0,<2.49.0'
-    - 'bioconductor-flowpeaks >=1.46.0,<1.47.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-samspectral >=1.54.0,<1.55.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-flowclust >=3.40.0,<3.41.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowmeans >=1.62.0,<1.63.0'
+    - 'bioconductor-flowmerge >=2.50.0,<2.51.0'
+    - 'bioconductor-flowpeaks >=1.48.0,<1.49.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-samspectral >=1.56.0,<1.57.0'
     - r-base
     - r-changepoint
     - r-cluster
@@ -49,14 +50,14 @@ requirements:
     - r-wavethresh
     - r-zoo
   run:
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-flowclust >=3.38.0,<3.39.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowmeans >=1.60.0,<1.61.0'
-    - 'bioconductor-flowmerge >=2.48.0,<2.49.0'
-    - 'bioconductor-flowpeaks >=1.46.0,<1.47.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-samspectral >=1.54.0,<1.55.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-flowclust >=3.40.0,<3.41.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowmeans >=1.62.0,<1.63.0'
+    - 'bioconductor-flowmerge >=2.50.0,<2.51.0'
+    - 'bioconductor-flowpeaks >=1.48.0,<1.49.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-samspectral >=1.56.0,<1.57.0'
     - r-base
     - r-changepoint
     - r-cluster
diff --git a/recipes/bioconductor-confessdata/meta.yaml b/recipes/bioconductor-confessdata/meta.yaml
index 4d75f88da25a8..68d94dd254c3a 100644
--- a/recipes/bioconductor-confessdata/meta.yaml
+++ b/recipes/bioconductor-confessdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "CONFESSdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: dde8faa711c55ae0abd4a0b9f8132233
+  md5: 07df3f8f783b3e734c4032b3f6ed61bd
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-confessdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-confessdata/post-link.sh b/recipes/bioconductor-confessdata/post-link.sh
index 83419aae9c66c..bd491dd59a8f3 100644
--- a/recipes/bioconductor-confessdata/post-link.sh
+++ b/recipes/bioconductor-confessdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "confessdata-1.28.0"
+installBiocDataPackage.sh "confessdata-1.30.0"
diff --git a/recipes/bioconductor-connectivitymap/meta.yaml b/recipes/bioconductor-connectivitymap/meta.yaml
index 792e086df1b38..ce2ee8169dab4 100644
--- a/recipes/bioconductor-connectivitymap/meta.yaml
+++ b/recipes/bioconductor-connectivitymap/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "ConnectivityMap" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0c98c66f64c50f8ae262bccdd4cd0bae
+  md5: bac29780256afebfd49b90f268114eaf
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-connectivitymap", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-connectivitymap/post-link.sh b/recipes/bioconductor-connectivitymap/post-link.sh
index 937ed494e6c7c..6840e2570ebd7 100644
--- a/recipes/bioconductor-connectivitymap/post-link.sh
+++ b/recipes/bioconductor-connectivitymap/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "connectivitymap-1.36.0"
+installBiocDataPackage.sh "connectivitymap-1.38.0"
diff --git a/recipes/bioconductor-consensus/meta.yaml b/recipes/bioconductor-consensus/meta.yaml
index 5f5940f7ad49e..3cfdf91faedfc 100644
--- a/recipes/bioconductor-consensus/meta.yaml
+++ b/recipes/bioconductor-consensus/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "consensus" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: bd7bce9ef0825d845f3b7db038974ab7
+  md5: f930fc9b058bce80ccbb112082cf3dc7
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-consensus", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, RUnit, rmarkdown, BiocGenerics
 requirements:
diff --git a/recipes/bioconductor-consensusclusterplus/meta.yaml b/recipes/bioconductor-consensusclusterplus/meta.yaml
index e9500b459fbd0..03b92e32b0a1c 100644
--- a/recipes/bioconductor-consensusclusterplus/meta.yaml
+++ b/recipes/bioconductor-consensusclusterplus/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.64.0" %}
+{% set version = "1.66.0" %}
 {% set name = "ConsensusClusterPlus" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 56f8a569c9a014296b658e520f1993d2
+  md5: 0943cc2a0d1dff314f384e65b8d71897
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-consensusclusterplus", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-all >=1.42.0,<1.43.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-all >=1.44.0,<1.45.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-cluster
   run:
-    - 'bioconductor-all >=1.42.0,<1.43.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-all >=1.44.0,<1.45.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-cluster
 test:
diff --git a/recipes/bioconductor-consensusde/meta.yaml b/recipes/bioconductor-consensusde/meta.yaml
index f31966944b1c0..303d9bae79e62 100644
--- a/recipes/bioconductor-consensusde/meta.yaml
+++ b/recipes/bioconductor-consensusde/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "consensusDE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,62 +11,63 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ef7863253b783fe015aee65395b9c453
+  md5: f4aedcdf9823551d0ea0cc2ae64ac475
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-consensusde", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-airway >=1.20.0,<1.21.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edaseq >=2.34.0,<2.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
+    - 'bioconductor-airway >=1.22.0,<1.23.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edaseq >=2.36.0,<2.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
     - 'bioconductor-ensdb.hsapiens.v86 >=2.99.0,<2.100.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-ruvseq >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-ruvseq >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene >=3.2.0,<3.3.0'
     - r-base
     - r-data.table
     - r-dendextend
     - r-rcolorbrewer
   run:
-    - 'bioconductor-airway >=1.20.0,<1.21.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edaseq >=2.34.0,<2.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
+    - 'bioconductor-airway >=1.22.0,<1.23.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edaseq >=2.36.0,<2.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
     - 'bioconductor-ensdb.hsapiens.v86 >=2.99.0,<2.100.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-ruvseq >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-ruvseq >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene >=3.2.0,<3.3.0'
     - r-base
     - r-data.table
diff --git a/recipes/bioconductor-consensusov/meta.yaml b/recipes/bioconductor-consensusov/meta.yaml
index ebb65e08d7703..10d4991a9294a 100644
--- a/recipes/bioconductor-consensusov/meta.yaml
+++ b/recipes/bioconductor-consensusov/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "consensusOV" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cd71f79b5fac603f87f16319580f65ff
+  md5: 54a03e3c6775a27643ffbf5192967ac2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-consensusov", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, ggplot2, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genefu >=2.32.0,<2.33.0'
-    - 'bioconductor-gsva >=1.48.0,<1.49.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genefu >=2.34.0,<2.35.0'
+    - 'bioconductor-gsva >=1.50.0,<1.51.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-gdata
     - r-matrixstats
     - r-randomforest
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genefu >=2.32.0,<2.33.0'
-    - 'bioconductor-gsva >=1.48.0,<1.49.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genefu >=2.34.0,<2.35.0'
+    - 'bioconductor-gsva >=1.50.0,<1.51.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-gdata
     - r-matrixstats
diff --git a/recipes/bioconductor-consensusseeker/meta.yaml b/recipes/bioconductor-consensusseeker/meta.yaml
index b9a4044f33479..55d0281d77d27 100644
--- a/recipes/bioconductor-consensusseeker/meta.yaml
+++ b/recipes/bioconductor-consensusseeker/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "consensusSeekeR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 60e0fda93cad54f7882cba52186783eb
+  md5: e752cec43fa487cd071a27a1f955b17e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-consensusseeker", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, ggplot2, knitr, rmarkdown, RUnit
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-stringr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-stringr
 test:
diff --git a/recipes/bioconductor-consica/meta.yaml b/recipes/bioconductor-consica/meta.yaml
index 1f06a4b25d807..cfe5f1bd4e8c0 100644
--- a/recipes/bioconductor-consica/meta.yaml
+++ b/recipes/bioconductor-consica/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "2.0.0" %}
 {% set name = "consICA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,37 +11,42 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5063262bd3705a643f8fada1e509fce4
+  md5: b64f871ca062dc65d6a883b000c761d8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-consica", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr, BiocStyle, rmarkdown, testthat
+# Suggests: knitr, BiocStyle, rmarkdown, testthat, Seurat
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - 'r-fastica >=1.2.1'
+    - r-ggplot2
     - r-pheatmap
+    - r-rfast
     - r-sm
     - r-survival
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - 'r-fastica >=1.2.1'
+    - r-ggplot2
     - r-pheatmap
+    - r-rfast
     - r-sm
     - r-survival
 test:
diff --git a/recipes/bioconductor-constand/meta.yaml b/recipes/bioconductor-constand/meta.yaml
index b730f63f0843f..f4242d0e9f6d5 100644
--- a/recipes/bioconductor-constand/meta.yaml
+++ b/recipes/bioconductor-constand/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "CONSTANd" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cd346235e5d208c081a80054f0c3d00f
+  md5: 6337f6a248f820600a99fa9ef9fc1571
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-constand", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, tidyr, ggplot2, gridExtra, magick, Cairo, limma
 requirements:
diff --git a/recipes/bioconductor-contibait/meta.yaml b/recipes/bioconductor-contibait/meta.yaml
index 168269e1a26ab..71415b965efc6 100644
--- a/recipes/bioconductor-contibait/meta.yaml
+++ b/recipes/bioconductor-contibait/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "contiBAIT" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: bc21baae59dc116f62b237e1690ac8ec
+  md5: 8297fd66bbfcd997be0f23cf31fcd644
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-contibait", max_pin="x.x") }}'
 # Suggests: BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-exomecopy >=1.46.0,<1.47.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfiles >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-exomecopy >=1.48.0,<1.49.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfiles >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-bh >=1.51.0.3'
     - r-clue
@@ -47,17 +48,17 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-exomecopy >=1.46.0,<1.47.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfiles >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-exomecopy >=1.48.0,<1.49.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfiles >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-bh >=1.51.0.3'
     - r-clue
diff --git a/recipes/bioconductor-conumee/meta.yaml b/recipes/bioconductor-conumee/meta.yaml
index 9d3c9cffbc336..e3dde4f6aeff4 100644
--- a/recipes/bioconductor-conumee/meta.yaml
+++ b/recipes/bioconductor-conumee/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "conumee" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,38 +11,39 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 2e8642efe6cfe74f1856bae5c4b5ec7d
+  md5: f7eab6e95ed82f050ef52895ef178ba0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-conumee", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, minfiData, RCurl
 requirements:
   host:
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0'
     - 'bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylationepicmanifest >=0.3.0,<0.4.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
   run:
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0'
     - 'bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylationepicmanifest >=0.3.0,<0.4.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-convert/meta.yaml b/recipes/bioconductor-convert/meta.yaml
index 5ed7bfd042ff8..82edc223b9c80 100644
--- a/recipes/bioconductor-convert/meta.yaml
+++ b/recipes/bioconductor-convert/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.76.0" %}
+{% set version = "1.78.0" %}
 {% set name = "convert" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: bd45e86f579302d2cc0e0418ba7ee45b
+  md5: 828a21b5a554d63faeb6cc2af0784394
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-convert", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-copa/meta.yaml b/recipes/bioconductor-copa/meta.yaml
index ce007cd183029..4c51fca6b7687 100644
--- a/recipes/bioconductor-copa/meta.yaml
+++ b/recipes/bioconductor-copa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.68.0" %}
+{% set version = "1.70.0" %}
 {% set name = "copa" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 7eceebde920ee2cdba8ff709c51b0607
+  md5: bd372714a4dd7e70b90d9232fcba322d
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-copa", max_pin="x.x") }}'
 # Suggests: colonCA
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   build:
     - {{ compiler('c') }}
@@ -39,3 +40,9 @@ about:
   summary: 'Functions to perform cancer outlier profile analysis.'
   description: 'COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
+    - usegalaxy-eu:{{ name|lower }}
diff --git a/recipes/bioconductor-copdsexualdimorphism.data/meta.yaml b/recipes/bioconductor-copdsexualdimorphism.data/meta.yaml
index 9f08845e78458..2239bacb44612 100644
--- a/recipes/bioconductor-copdsexualdimorphism.data/meta.yaml
+++ b/recipes/bioconductor-copdsexualdimorphism.data/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "COPDSexualDimorphism.data" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9ae2601608f8b3f711b73d24734e7d7c
+  md5: d7cf1990679c90cbaf5250c4761effec
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-copdsexualdimorphism.data", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-copdsexualdimorphism.data/post-link.sh b/recipes/bioconductor-copdsexualdimorphism.data/post-link.sh
index a3394d9c9cada..646f2cfcfb63e 100644
--- a/recipes/bioconductor-copdsexualdimorphism.data/post-link.sh
+++ b/recipes/bioconductor-copdsexualdimorphism.data/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "copdsexualdimorphism.data-1.36.0"
+installBiocDataPackage.sh "copdsexualdimorphism.data-1.38.0"
diff --git a/recipes/bioconductor-copyhelper/meta.yaml b/recipes/bioconductor-copyhelper/meta.yaml
index 87f295b8ca1a0..7b020ea9f183e 100644
--- a/recipes/bioconductor-copyhelper/meta.yaml
+++ b/recipes/bioconductor-copyhelper/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "CopyhelpeR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c38e2379228446d4d94e5ced48633a54
+  md5: bb8d3e8cba0c27898e43cbdcfcac6c62
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-copyhelper", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-copyhelper/post-link.sh b/recipes/bioconductor-copyhelper/post-link.sh
index ae2a9b3ec6ac2..e5749ce2fa85f 100644
--- a/recipes/bioconductor-copyhelper/post-link.sh
+++ b/recipes/bioconductor-copyhelper/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "copyhelper-1.32.0"
+installBiocDataPackage.sh "copyhelper-1.34.0"
diff --git a/recipes/bioconductor-copyneutralima/meta.yaml b/recipes/bioconductor-copyneutralima/meta.yaml
index 6fa32af26bdfe..ded511225ae06 100644
--- a/recipes/bioconductor-copyneutralima/meta.yaml
+++ b/recipes/bioconductor-copyneutralima/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "CopyNeutralIMA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8707f36701c11a45e25e92a63cb81f20
+  md5: 5f1921b0aff4c3f39b662cc1ae70bf28
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-copyneutralima", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle,knitr,rmarkdown,minfi,conumee,minfiData
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - 'r-rdpack >=0.8'
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - 'r-rdpack >=0.8'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-copyneutralima/post-link.sh b/recipes/bioconductor-copyneutralima/post-link.sh
index 70533c31c5401..4ee3bca445581 100644
--- a/recipes/bioconductor-copyneutralima/post-link.sh
+++ b/recipes/bioconductor-copyneutralima/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "copyneutralima-1.18.0"
+installBiocDataPackage.sh "copyneutralima-1.20.0"
diff --git a/recipes/bioconductor-copynumberplots/meta.yaml b/recipes/bioconductor-copynumberplots/meta.yaml
index f7bdde352d85c..cd504f81494c7 100644
--- a/recipes/bioconductor-copynumberplots/meta.yaml
+++ b/recipes/bioconductor-copynumberplots/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "CopyNumberPlots" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,38 +11,39 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 72aa4e93152130ecf6edd5f80955c1a2
+  md5: d35c96c521087a1183dd2ae465b3d2a7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-copynumberplots", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, panelcn.mops, BSgenome.Hsapiens.UCSC.hg19.masked, DNAcopy, testthat
 requirements:
   host:
-    - 'bioconductor-cn.mops >=1.46.0,<1.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-karyoploter >=1.26.0,<1.27.0'
-    - 'bioconductor-regioner >=1.32.0,<1.33.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-cn.mops >=1.48.0,<1.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-karyoploter >=1.28.0,<1.29.0'
+    - 'bioconductor-regioner >=1.34.0,<1.35.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-cn.mops >=1.46.0,<1.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-karyoploter >=1.26.0,<1.27.0'
-    - 'bioconductor-regioner >=1.32.0,<1.33.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-cn.mops >=1.48.0,<1.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-karyoploter >=1.28.0,<1.29.0'
+    - 'bioconductor-regioner >=1.34.0,<1.35.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-cordon/meta.yaml b/recipes/bioconductor-cordon/meta.yaml
index 2e22b546b679c..5733faeb89818 100644
--- a/recipes/bioconductor-cordon/meta.yaml
+++ b/recipes/bioconductor-cordon/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "coRdon" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e0567325e9913078d8dfec839b8bf7ae
+  md5: 19e0e0e91d3cccd4c277710c9273275e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cordon", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, testthat, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -30,8 +31,8 @@ requirements:
     - r-purrr
     - r-stringr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - r-data.table
     - r-dplyr
diff --git a/recipes/bioconductor-coregnet/meta.yaml b/recipes/bioconductor-coregnet/meta.yaml
index 3b2723ada35bc..792ee9c4ed17b 100644
--- a/recipes/bioconductor-coregnet/meta.yaml
+++ b/recipes/bioconductor-coregnet/meta.yaml
@@ -13,7 +13,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 57d4b5f625123f9637aa4d696a2eb859
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
@@ -44,3 +44,6 @@ about:
   description: 'This package provides methods to identify active transcriptional programs. Methods and classes are provided to import or infer large scale co-regulatory network from transcriptomic data. The specificity of the encoded networks is to model Transcription Factor cooperation. External regulation evidences (TFBS, ChIP,...) can be integrated to assess the inferred network and refine it if necessary. Transcriptional activity of the regulators in the network can be estimated using an measure of their influence in a given sample. Finally, an interactive UI can be used to navigate through the network of cooperative regulators and to visualize their activity in a specific sample or subgroup sample. The proposed visualization tool can be used to integrate gene expression, transcriptional activity, copy number status, sample classification and a transcriptional network including co-regulation information.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/bioconductor-coregx/meta.yaml b/recipes/bioconductor-coregx/meta.yaml
index eae9d496887ff..42ac17580c6ed 100644
--- a/recipes/bioconductor-coregx/meta.yaml
+++ b/recipes/bioconductor-coregx/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.4.0" %}
+{% set version = "2.6.0" %}
 {% set name = "CoreGx" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: dcab6de8de5c96329785558051193dbe
+  md5: 3556f412bd014d5294b15feb8342d78e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-coregx", max_pin="x.x") }}'
   noarch: generic
 # Suggests: pander, markdown, BiocStyle, rmarkdown, knitr, formatR, testthat
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-bumpymatrix >=1.8.0,<1.9.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-piano >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-bumpymatrix >=1.10.0,<1.11.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-piano >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bench
     - r-checkmate
@@ -39,15 +40,15 @@ requirements:
     - r-lsa
     - r-rlang
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-bumpymatrix >=1.8.0,<1.9.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-piano >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-bumpymatrix >=1.10.0,<1.11.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-piano >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bench
     - r-checkmate
@@ -65,4 +66,3 @@ about:
   summary: 'Classes and Functions to Serve as the Basis for Other ''Gx'' Packages'
   description: 'A collection of functions and classes which serve as the foundation for our lab''s suite of R packages, such as ''PharmacoGx'' and ''RadioGx''. This package was created to abstract shared functionality from other lab package releases to increase ease of maintainability and reduce code repetition in current and future ''Gx'' suite programs. Major features include a ''CoreSet'' class, from which ''RadioSet'' and ''PharmacoSet'' are derived, along with get and set methods for each respective slot. Additional functions related to fitting and plotting dose response curves, quantifying statistical correlation and calculating area under the curve (AUC) or survival fraction (SF) are included. For more details please see the included documentation, as well as: Smirnov, P., Safikhani, Z., El-Hachem, N., Wang, D., She, A., Olsen, C., Freeman, M., Selby, H., Gendoo, D., Grossman, P., Beck, A., Aerts, H., Lupien, M., Goldenberg, A. (2015) <doi:10.1093/bioinformatics/btv723>. Manem, V., Labie, M., Smirnov, P., Kofia, V., Freeman, M., Koritzinksy, M., Abazeed, M., Haibe-Kains, B., Bratman, S. (2018) <doi:10.1101/449793>.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
-
diff --git a/recipes/bioconductor-cormotif/meta.yaml b/recipes/bioconductor-cormotif/meta.yaml
index fa6bd5bd21c2c..55b5aa549ab64 100644
--- a/recipes/bioconductor-cormotif/meta.yaml
+++ b/recipes/bioconductor-cormotif/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "Cormotif" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f673c43aae08a2209f46845b805650dc
+  md5: 6e65ec2460aecf6004e416d7c61c4c1d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cormotif", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-corral/meta.yaml b/recipes/bioconductor-corral/meta.yaml
index ff154a3ace1c2..9086ae8658de5 100644
--- a/recipes/bioconductor-corral/meta.yaml
+++ b/recipes/bioconductor-corral/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "corral" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 41cabd6e030f01ca76f98c551ec32287
+  md5: 7f1ebb217a695452605bd8aa94f8a5a1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-corral", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ade4, BiocStyle, CellBench, DuoClustering2018, knitr, rmarkdown, scater, testthat
 requirements:
   host:
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-ggthemes
@@ -34,9 +35,9 @@ requirements:
     - r-reshape2
     - r-transport
   run:
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-ggthemes
diff --git a/recipes/bioconductor-correp/meta.yaml b/recipes/bioconductor-correp/meta.yaml
index e56b7ed84b106..948f984973f67 100644
--- a/recipes/bioconductor-correp/meta.yaml
+++ b/recipes/bioconductor-correp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.66.0" %}
+{% set version = "1.68.0" %}
 {% set name = "CORREP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2f8c70e08f9fea69ce64ede0fa0d2f65
+  md5: 2cf1b0a377be4fec857415e908e2d8d2
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-correp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: cluster, MASS
 requirements:
diff --git a/recipes/bioconductor-coseq/meta.yaml b/recipes/bioconductor-coseq/meta.yaml
index 11ee5916f621e..6d453975c5710 100644
--- a/recipes/bioconductor-coseq/meta.yaml
+++ b/recipes/bioconductor-coseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "coseq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 17d095c8ad593a4b879ea4056758ce0c
+  md5: 1e4bea8d520a2554f8f1095d6912074b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-coseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biobase, knitr, rmarkdown, testthat, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-htsfilter >=1.40.0,<1.41.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-htsfilter >=1.42.0,<1.43.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-capushe
     - r-compositions
@@ -38,12 +39,12 @@ requirements:
     - r-rmixmod
     - r-scales
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-htsfilter >=1.40.0,<1.41.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-htsfilter >=1.42.0,<1.43.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-capushe
     - r-compositions
diff --git a/recipes/bioconductor-cosia/meta.yaml b/recipes/bioconductor-cosia/meta.yaml
index 26d86569f0b09..9db22300f331c 100644
--- a/recipes/bioconductor-cosia/meta.yaml
+++ b/recipes/bioconductor-cosia/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "CoSIA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3f8ef5bd89e113c1bf68ce002bd54140
+  md5: 217ff53ed0aac2ca3c2d91ce5237c111
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cosia", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle (>= 2.22.0), tidyverse (>= 1.3.1), knitr (>= 1.42), rmarkdown (>= 2.20), testthat (>= 3.1.6), qpdf (>= 1.3.0)
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationtools >=1.74.0,<1.75.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-org.ce.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.dm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.dr.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationtools >=1.76.0,<1.77.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-org.ce.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.dm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.dr.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - 'r-dplyr >=1.0.7'
     - 'r-ggplot2 >=3.3.5'
@@ -44,16 +45,16 @@ requirements:
     - 'r-tidyr >=1.2.0'
     - 'r-tidyselect >=1.1.2'
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationtools >=1.74.0,<1.75.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-org.ce.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.dm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.dr.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationtools >=1.76.0,<1.77.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-org.ce.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.dm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.dr.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - 'r-dplyr >=1.0.7'
     - 'r-ggplot2 >=3.3.5'
diff --git a/recipes/bioconductor-cosiadata/meta.yaml b/recipes/bioconductor-cosiadata/meta.yaml
index 184f0cea9bd1b..22efff4627359 100644
--- a/recipes/bioconductor-cosiadata/meta.yaml
+++ b/recipes/bioconductor-cosiadata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "CoSIAdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5a1d517d2c097ad8abf9c8298f4ab46d
+  md5: f0ec9d5ca01647ec3d52e264c0828273
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cosiadata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle (>= 2.26.0), utils (>= 4.3.0), AnnotationHub (>= 3.7.3), knitr (>= 1.42)
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-cosiadata/post-link.sh b/recipes/bioconductor-cosiadata/post-link.sh
index 372312c2627c9..1ec63202a4c96 100644
--- a/recipes/bioconductor-cosiadata/post-link.sh
+++ b/recipes/bioconductor-cosiadata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "cosiadata-1.0.0"
+installBiocDataPackage.sh "cosiadata-1.2.0"
diff --git a/recipes/bioconductor-cosmic.67/meta.yaml b/recipes/bioconductor-cosmic.67/meta.yaml
index 805c769c75dc5..4782b2a7ffb93 100644
--- a/recipes/bioconductor-cosmic.67/meta.yaml
+++ b/recipes/bioconductor-cosmic.67/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "COSMIC.67" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f5242999a8b93e384ab8c05a2950ccde
+  md5: 392f31ffd7e95a7558d248d36dcc37fe
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cosmic.67", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle, knitr
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-cosmic.67/post-link.sh b/recipes/bioconductor-cosmic.67/post-link.sh
index 7ceb0e5a939f6..fe6c437614e15 100644
--- a/recipes/bioconductor-cosmic.67/post-link.sh
+++ b/recipes/bioconductor-cosmic.67/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "cosmic.67-1.36.0"
+installBiocDataPackage.sh "cosmic.67-1.38.0"
diff --git a/recipes/bioconductor-cosmiq/meta.yaml b/recipes/bioconductor-cosmiq/meta.yaml
index 304d635d26040..9b3100477fa33 100644
--- a/recipes/bioconductor-cosmiq/meta.yaml
+++ b/recipes/bioconductor-cosmiq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "cosmiq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d8f08cd3b2fd8da501b6f24cc86edbe0
+  md5: ae02870f3759e09bb2c8f86d38306f01
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cosmiq", max_pin="x.x") }}'
 # Suggests: RUnit, BiocGenerics, BiocStyle
 requirements:
   host:
-    - 'bioconductor-faahko >=1.40.0,<1.41.0'
-    - 'bioconductor-massspecwavelet >=1.66.0,<1.67.0'
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-faahko >=1.42.0,<1.43.0'
+    - 'bioconductor-massspecwavelet >=1.68.0,<1.69.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-base
     - r-pracma
     - r-rcpp
     - libblas
     - liblapack
   run:
-    - 'bioconductor-faahko >=1.40.0,<1.41.0'
-    - 'bioconductor-massspecwavelet >=1.66.0,<1.67.0'
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-faahko >=1.42.0,<1.43.0'
+    - 'bioconductor-massspecwavelet >=1.68.0,<1.69.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-base
     - r-pracma
     - r-rcpp
diff --git a/recipes/bioconductor-cosmosr/meta.yaml b/recipes/bioconductor-cosmosr/meta.yaml
index 6fc21c8828f62..3e3679704e138 100644
--- a/recipes/bioconductor-cosmosr/meta.yaml
+++ b/recipes/bioconductor-cosmosr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "cosmosR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f18bfd17d55bd1b64aa31eb80aa19126
+  md5: f1e0ed65fc63cbdf3a7936bf45e73f3e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cosmosr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, piano, ggplot2
 requirements:
   host:
-    - 'bioconductor-carnival >=2.10.0,<2.11.0'
-    - 'bioconductor-dorothea >=1.12.0,<1.13.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
+    - 'bioconductor-carnival >=2.12.0,<2.13.0'
+    - 'bioconductor-decoupler >=2.8.0,<2.9.0'
+    - 'bioconductor-dorothea >=1.14.0,<1.15.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
     - r-base
     - r-dplyr
     - r-igraph
@@ -33,9 +35,10 @@ requirements:
     - r-stringr
     - r-visnetwork
   run:
-    - 'bioconductor-carnival >=2.10.0,<2.11.0'
-    - 'bioconductor-dorothea >=1.12.0,<1.13.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
+    - 'bioconductor-carnival >=2.12.0,<2.13.0'
+    - 'bioconductor-decoupler >=2.8.0,<2.9.0'
+    - 'bioconductor-dorothea >=1.14.0,<1.15.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
     - r-base
     - r-dplyr
     - r-igraph
diff --git a/recipes/bioconductor-cosnet/meta.yaml b/recipes/bioconductor-cosnet/meta.yaml
index 4ff74fc3d6a72..83ab3129d7fd1 100644
--- a/recipes/bioconductor-cosnet/meta.yaml
+++ b/recipes/bioconductor-cosnet/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "COSNet" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ed1d625a532916dc04b50ff346f6aedd
+  md5: 6648998ac68e41642f1a7bad77e0bb7f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cosnet", max_pin="x.x") }}'
 # Suggests: bionetdata, PerfMeas, RUnit, BiocGenerics
 requirements:
   host:
diff --git a/recipes/bioconductor-cotan/meta.yaml b/recipes/bioconductor-cotan/meta.yaml
index b712c8dc4228b..7b8cee0e472ab 100644
--- a/recipes/bioconductor-cotan/meta.yaml
+++ b/recipes/bioconductor-cotan/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.0.4" %}
+{% set version = "2.2.1" %}
 {% set name = "COTAN" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 186328978b156456a4490ce7eb44361a
+  md5: ec3bbfe10c1ede4ae12398534ab5395b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cotan", max_pin="x.x") }}'
   noarch: generic
-# Suggests: testthat (>= 3.0.0), proto, spelling, knitr, data.table, gsubfn, R.utils, tidyverse, rmarkdown, htmlwidgets, MASS, Rtsne, plotly, BiocStyle, cowplot, qpdf, GEOquery
+# Suggests: testthat (>= 3.0.0), proto, spelling, knitr, data.table, gsubfn, R.utils, tidyverse, rmarkdown, htmlwidgets, MASS, Rtsne, plotly, BiocStyle, cowplot, qpdf, GEOquery, sf
 requirements:
   host:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
     - r-assertthat
     - r-base
     - r-circlize
@@ -33,6 +34,7 @@ requirements:
     - r-ggthemes
     - r-irlba
     - r-matrix
+    - r-paralleldist
     - r-parallelly
     - r-plyr
     - r-rcolorbrewer
@@ -47,7 +49,7 @@ requirements:
     - r-withr
     - r-zeallot
   run:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
     - r-assertthat
     - r-base
     - r-circlize
@@ -59,6 +61,7 @@ requirements:
     - r-ggthemes
     - r-irlba
     - r-matrix
+    - r-paralleldist
     - r-parallelly
     - r-plyr
     - r-rcolorbrewer
diff --git a/recipes/bioconductor-cottoncdf/meta.yaml b/recipes/bioconductor-cottoncdf/meta.yaml
index 1d7edd68e7f91..c8d58aec1b26b 100644
--- a/recipes/bioconductor-cottoncdf/meta.yaml
+++ b/recipes/bioconductor-cottoncdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "cottoncdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b9d2a4b43235c6e531b78cca006e84b2
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cottoncdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-cottonprobe/meta.yaml b/recipes/bioconductor-cottonprobe/meta.yaml
index 6c4575d866433..6b4cc385024ae 100644
--- a/recipes/bioconductor-cottonprobe/meta.yaml
+++ b/recipes/bioconductor-cottonprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "cottonprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 032fa94876685820d94526fd56dd0b65
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cottonprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-countsimqc/meta.yaml b/recipes/bioconductor-countsimqc/meta.yaml
index 38c8cb7b77e2f..718397f70710d 100644
--- a/recipes/bioconductor-countsimqc/meta.yaml
+++ b/recipes/bioconductor-countsimqc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "countsimQC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1a076a7246b7f4037ccd8660860a160a
+  md5: a44b69f7c0a9b3f5f822df61a6fcef73
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-countsimqc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat
 requirements:
   host:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
     - 'bioconductor-genomeinfodbdata >=1.2.0,<1.3.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-catools
     - r-dplyr
@@ -36,11 +37,11 @@ requirements:
     - 'r-rmarkdown >=2.5'
     - r-tidyr
   run:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
     - 'bioconductor-genomeinfodbdata >=1.2.0,<1.3.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-catools
     - r-dplyr
diff --git a/recipes/bioconductor-coveb/meta.yaml b/recipes/bioconductor-coveb/meta.yaml
index 34665cfe61e9a..df6fb540d4b0b 100644
--- a/recipes/bioconductor-coveb/meta.yaml
+++ b/recipes/bioconductor-coveb/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "covEB" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 67dcc92152292212d430f023d1cca9b5
+  md5: 5469ab09a3d502902dc4d698abd1cbae
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-coveb", max_pin="x.x") }}'
   noarch: generic
 # Suggests: curatedBladderData
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-gsl
     - r-igraph
@@ -29,7 +30,7 @@ requirements:
     - r-matrix
     - r-mvtnorm
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-gsl
     - r-igraph
diff --git a/recipes/bioconductor-coverageview/meta.yaml b/recipes/bioconductor-coverageview/meta.yaml
index eaccfd23cd371..c5783d123cbb9 100644
--- a/recipes/bioconductor-coverageview/meta.yaml
+++ b/recipes/bioconductor-coverageview/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "CoverageView" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ec25cb60624d5cf284f2f41a60abf969
+  md5: 27821acd2787d95d95532f71d22378df
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-coverageview", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-covrna/meta.yaml b/recipes/bioconductor-covrna/meta.yaml
index 07bd860be2a35..43b8f2d3c5e2f 100644
--- a/recipes/bioconductor-covrna/meta.yaml
+++ b/recipes/bioconductor-covrna/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "covRNA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ae2b33f4b58cbd6d9f42bb5ba444b717
+  md5: dd8405538f8c54345579ee7d0d5dc63f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-covrna", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
     - r-ade4
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
     - r-ade4
     - r-base
 test:
diff --git a/recipes/bioconductor-cpvsnp/meta.yaml b/recipes/bioconductor-cpvsnp/meta.yaml
index d15cd5ea861d9..c4c3bdc69a5f3 100644
--- a/recipes/bioconductor-cpvsnp/meta.yaml
+++ b/recipes/bioconductor-cpvsnp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "cpvSNP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 064f756a6ebeb3d9944e85a45b99e032
+  md5: 2edb50570eb609c9962e57d36d70ceba
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cpvsnp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit, BiocGenerics, ReportingTools, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
     - r-base
     - r-corpcor
     - r-ggplot2
     - r-plyr
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
     - r-base
     - r-corpcor
     - r-ggplot2
diff --git a/recipes/bioconductor-cqn/meta.yaml b/recipes/bioconductor-cqn/meta.yaml
index 9559ff98266f3..267b7af6d65ba 100644
--- a/recipes/bioconductor-cqn/meta.yaml
+++ b/recipes/bioconductor-cqn/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "cqn" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d0d1324320136000b8b75056cdc3bf78
+  md5: a72eb9ae5c393dec7ecc4f992d11328f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cqn", max_pin="x.x") }}'
   noarch: generic
 # Suggests: scales, edgeR
 requirements:
   host:
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-mclust
     - r-nor1mix
     - r-quantreg
   run:
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-mclust
     - r-nor1mix
diff --git a/recipes/bioconductor-crcl18/meta.yaml b/recipes/bioconductor-crcl18/meta.yaml
index 6849b5e08730f..7a7776d0bfc5d 100644
--- a/recipes/bioconductor-crcl18/meta.yaml
+++ b/recipes/bioconductor-crcl18/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "CRCL18" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: df8b3bf91d7c7ac39d0fee78b65c1da0
+  md5: 176bd921f08e717ec49e4e3eb4a5e5e5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-crcl18", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-crcl18/post-link.sh b/recipes/bioconductor-crcl18/post-link.sh
index afb5adf88878a..841a4c62b2bb7 100644
--- a/recipes/bioconductor-crcl18/post-link.sh
+++ b/recipes/bioconductor-crcl18/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "crcl18-1.20.0"
+installBiocDataPackage.sh "crcl18-1.22.0"
diff --git a/recipes/bioconductor-crimage/meta.yaml b/recipes/bioconductor-crimage/meta.yaml
index bba214a251f5f..42e7d5fc48fd8 100644
--- a/recipes/bioconductor-crimage/meta.yaml
+++ b/recipes/bioconductor-crimage/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "CRImage" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 67f3739d67a92f8e46b27e2b3ff83d55
+  md5: 84d9bedefc25b08b7e6d86c47bf233f9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-crimage", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-acgh >=1.78.0,<1.79.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
+    - 'bioconductor-acgh >=1.80.0,<1.81.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
     - r-base
     - r-e1071
     - r-foreach
     - r-mass
     - r-sgeostat
   run:
-    - 'bioconductor-acgh >=1.78.0,<1.79.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
+    - 'bioconductor-acgh >=1.80.0,<1.81.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
     - r-base
     - r-e1071
     - r-foreach
diff --git a/recipes/bioconductor-crisprbase/meta.yaml b/recipes/bioconductor-crisprbase/meta.yaml
index e75426f262fca..92d843a59a6cf 100644
--- a/recipes/bioconductor-crisprbase/meta.yaml
+++ b/recipes/bioconductor-crisprbase/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "crisprBase" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5fc52160cd713801b9499ed277ebcec9
+  md5: 20cc1254ee7d33a966bb795f09f8be44
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-crisprbase", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-stringr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-stringr
 test:
diff --git a/recipes/bioconductor-crisprbowtie/meta.yaml b/recipes/bioconductor-crisprbowtie/meta.yaml
index 152de6564d4a3..c2923cdfff081 100644
--- a/recipes/bioconductor-crisprbowtie/meta.yaml
+++ b/recipes/bioconductor-crisprbowtie/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "crisprBowtie" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f84e8a18573b68f4d70067e3180b08a3
+  md5: eabea0206c16b87d8acaa65245390d30
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-crisprbowtie", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, BSgenome.Hsapiens.UCSC.hg38, knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-crisprbase >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rbowtie >=1.40.0,<1.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-crisprbase >=1.6.0,<1.7.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rbowtie >=1.42.0,<1.43.0'
     - r-base
     - r-readr
     - r-stringr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-crisprbase >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rbowtie >=1.40.0,<1.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-crisprbase >=1.6.0,<1.7.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rbowtie >=1.42.0,<1.43.0'
     - r-base
     - r-readr
     - r-stringr
diff --git a/recipes/bioconductor-crisprbwa/meta.yaml b/recipes/bioconductor-crisprbwa/meta.yaml
index 1f433fa15b865..58f4eece924b8 100644
--- a/recipes/bioconductor-crisprbwa/meta.yaml
+++ b/recipes/bioconductor-crisprbwa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "crisprBwa" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9a42166c3ec58a55aeec7eda3e512eae
+  md5: d77734ef6cfa03fb7b08c21c59155518
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-crisprbwa", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, BSgenome.Hsapiens.UCSC.hg38, knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-crisprbase >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-rbwa >=1.4.0,<1.5.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-crisprbase >=1.6.0,<1.7.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-rbwa >=1.6.0,<1.7.0'
     - r-base
     - r-readr
     - r-stringr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-crisprbase >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-rbwa >=1.4.0,<1.5.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-crisprbase >=1.6.0,<1.7.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-rbwa >=1.6.0,<1.7.0'
     - r-base
     - r-readr
     - r-stringr
diff --git a/recipes/bioconductor-crisprdesign/meta.yaml b/recipes/bioconductor-crisprdesign/meta.yaml
index ee30ed17f1f52..ead19116d4702 100644
--- a/recipes/bioconductor-crisprdesign/meta.yaml
+++ b/recipes/bioconductor-crisprdesign/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "crisprDesign" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,49 +11,50 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 84860ded55e114a288c8d4b22b90f7da
+  md5: f4efe77ba4d8f440af21a1e80f0e1f5d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-crisprdesign", max_pin="x.x") }}'
   noarch: generic
 # Suggests: biomaRt, BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10, BiocStyle, crisprBwa (>= 0.99.7), knitr, rmarkdown, Rbowtie, Rbwa, RCurl, testthat
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-crisprbase >=1.4.0,<1.5.0'
-    - 'bioconductor-crisprbowtie >=1.4.0,<1.5.0'
-    - 'bioconductor-crisprscore >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-crisprbase >=1.6.0,<1.7.0'
+    - 'bioconductor-crisprbowtie >=1.6.0,<1.7.0'
+    - 'bioconductor-crisprscore >=1.6.0,<1.7.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-matrix
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-crisprbase >=1.4.0,<1.5.0'
-    - 'bioconductor-crisprbowtie >=1.4.0,<1.5.0'
-    - 'bioconductor-crisprscore >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-crisprbase >=1.6.0,<1.7.0'
+    - 'bioconductor-crisprbowtie >=1.6.0,<1.7.0'
+    - 'bioconductor-crisprscore >=1.6.0,<1.7.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-matrix
 test:
diff --git a/recipes/bioconductor-crisprscore/meta.yaml b/recipes/bioconductor-crisprscore/meta.yaml
index e7547701a84ed..2ac786f7e1988 100644
--- a/recipes/bioconductor-crisprscore/meta.yaml
+++ b/recipes/bioconductor-crisprscore/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "crisprScore" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2652f2da85d86eb913f4c5dc403ae5be
+  md5: c83f7928b03ce0308175835556dfcb54
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-crisprscore", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-basilisk.utils >=1.12.0,<1.13.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-crisprscoredata >=1.4.0,<1.5.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-basilisk.utils >=1.14.0,<1.15.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-crisprscoredata >=1.6.0,<1.7.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-randomforest
     - r-reticulate
     - r-stringr
   run:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-basilisk.utils >=1.12.0,<1.13.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-crisprscoredata >=1.4.0,<1.5.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-basilisk.utils >=1.14.0,<1.15.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-crisprscoredata >=1.6.0,<1.7.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-randomforest
     - r-reticulate
diff --git a/recipes/bioconductor-crisprscoredata/meta.yaml b/recipes/bioconductor-crisprscoredata/meta.yaml
index 385f8db75cbd4..56963b7b20d4a 100644
--- a/recipes/bioconductor-crisprscoredata/meta.yaml
+++ b/recipes/bioconductor-crisprscoredata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "crisprScoreData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: feb17485db66f6e86d92b42af3731f4a
+  md5: 1f4d86404f045ec36cf7d1b1c64373fe
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-crisprscoredata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-crisprscoredata/post-link.sh b/recipes/bioconductor-crisprscoredata/post-link.sh
index 3e7804e70fdcb..4fd2ecb7ae14e 100644
--- a/recipes/bioconductor-crisprscoredata/post-link.sh
+++ b/recipes/bioconductor-crisprscoredata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "crisprscoredata-1.4.0"
+installBiocDataPackage.sh "crisprscoredata-1.6.0"
diff --git a/recipes/bioconductor-crisprseek/meta.yaml b/recipes/bioconductor-crisprseek/meta.yaml
index cd254e810c69b..56325695ce330 100644
--- a/recipes/bioconductor-crisprseek/meta.yaml
+++ b/recipes/bioconductor-crisprseek/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "CRISPRseek" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f820f2bad907afb0a89e75f3923152d0
+  md5: b14c3c52470140b9c7bc85b9ca4044a5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-crisprseek", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocStyle, BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, BSgenome.Mmusculus.UCSC.mm10, TxDb.Mmusculus.UCSC.mm10.knownGene, org.Mm.eg.db, lattice, MASS, tensorflow, testthat
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -40,16 +41,16 @@ requirements:
     - r-reticulate
     - r-seqinr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-data.table
     - r-dplyr
diff --git a/recipes/bioconductor-crisprvariants/meta.yaml b/recipes/bioconductor-crisprvariants/meta.yaml
index 9750f1f3a78e8..a820551578ab1 100644
--- a/recipes/bioconductor-crisprvariants/meta.yaml
+++ b/recipes/bioconductor-crisprvariants/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "CrispRVariants" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,39 +11,40 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8f6121ca35c8ed2e06bd42111ac2aeea
+  md5: ede7cabcf986e2494f2e7b489621dd09
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-crisprvariants", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BiocStyle, gdata, GenomicFeatures, knitr, rmarkdown, rtracklayer, sangerseqR, testthat, VariantAnnotation
+# Suggests: BiocStyle, GenomicFeatures, knitr, rmarkdown, readxl, rtracklayer, sangerseqR, testthat, VariantAnnotation
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-ggplot2 >=2.2.0'
     - r-gridextra
     - r-reshape2
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-ggplot2 >=2.2.0'
     - r-gridextra
diff --git a/recipes/bioconductor-crisprverse/meta.yaml b/recipes/bioconductor-crisprverse/meta.yaml
index 49c16fe8000ba..112545aadf561 100644
--- a/recipes/bioconductor-crisprverse/meta.yaml
+++ b/recipes/bioconductor-crisprverse/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "crisprVerse" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: dc5f98e715c08356e21bd39d54ca812e
+  md5: dff359d1f63b8a58289ef0914c9260c5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-crisprverse", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, testthat
 requirements:
   host:
-    - 'bioconductor-crisprbase >=1.4.0,<1.5.0'
-    - 'bioconductor-crisprbowtie >=1.4.0,<1.5.0'
-    - 'bioconductor-crisprdesign >=1.2.0,<1.3.0'
-    - 'bioconductor-crisprscore >=1.4.0,<1.5.0'
-    - 'bioconductor-crisprscoredata >=1.4.0,<1.5.0'
-    - 'bioconductor-crisprviz >=1.2.0,<1.3.0'
+    - 'bioconductor-crisprbase >=1.6.0,<1.7.0'
+    - 'bioconductor-crisprbowtie >=1.6.0,<1.7.0'
+    - 'bioconductor-crisprdesign >=1.4.0,<1.5.0'
+    - 'bioconductor-crisprscore >=1.6.0,<1.7.0'
+    - 'bioconductor-crisprscoredata >=1.6.0,<1.7.0'
+    - 'bioconductor-crisprviz >=1.4.0,<1.5.0'
     - r-base
     - r-biocmanager
     - r-cli
     - r-rlang
   run:
-    - 'bioconductor-crisprbase >=1.4.0,<1.5.0'
-    - 'bioconductor-crisprbowtie >=1.4.0,<1.5.0'
-    - 'bioconductor-crisprdesign >=1.2.0,<1.3.0'
-    - 'bioconductor-crisprscore >=1.4.0,<1.5.0'
-    - 'bioconductor-crisprscoredata >=1.4.0,<1.5.0'
-    - 'bioconductor-crisprviz >=1.2.0,<1.3.0'
+    - 'bioconductor-crisprbase >=1.6.0,<1.7.0'
+    - 'bioconductor-crisprbowtie >=1.6.0,<1.7.0'
+    - 'bioconductor-crisprdesign >=1.4.0,<1.5.0'
+    - 'bioconductor-crisprscore >=1.6.0,<1.7.0'
+    - 'bioconductor-crisprscoredata >=1.6.0,<1.7.0'
+    - 'bioconductor-crisprviz >=1.4.0,<1.5.0'
     - r-base
     - r-biocmanager
     - r-cli
diff --git a/recipes/bioconductor-crisprviz/meta.yaml b/recipes/bioconductor-crisprviz/meta.yaml
index a32e148c6aea0..1c835bd954fd8 100644
--- a/recipes/bioconductor-crisprviz/meta.yaml
+++ b/recipes/bioconductor-crisprviz/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "crisprViz" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,40 +11,41 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 418a29f193e424f19794de01c36412ec
+  md5: a95c0cc87c7934da1e9bbfeb1e27bd3a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-crisprviz", max_pin="x.x") }}'
   noarch: generic
 # Suggests: AnnotationHub, BiocStyle, BSgenome.Hsapiens.UCSC.hg38, knitr, rmarkdown, rtracklayer, testthat, utils
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-crisprbase >=1.4.0,<1.5.0'
-    - 'bioconductor-crisprdesign >=1.2.0,<1.3.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-crisprbase >=1.6.0,<1.7.0'
+    - 'bioconductor-crisprdesign >=1.4.0,<1.5.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-crisprbase >=1.4.0,<1.5.0'
-    - 'bioconductor-crisprdesign >=1.2.0,<1.3.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-crisprbase >=1.6.0,<1.7.0'
+    - 'bioconductor-crisprdesign >=1.4.0,<1.5.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-crlmm/meta.yaml b/recipes/bioconductor-crlmm/meta.yaml
index f433b5954fc87..6e0ee3be271f6 100644
--- a/recipes/bioconductor-crlmm/meta.yaml
+++ b/recipes/bioconductor-crlmm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.58.0" %}
+{% set version = "1.60.0" %}
 {% set name = "crlmm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c77b15041b77a1679d307900099a79a9
+  md5: d047359287ee832d97e95c0945dff8cc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-crlmm", max_pin="x.x") }}'
 # Suggests: hapmapsnp6, genomewidesnp6Crlmm (>= 1.0.7), snpStats, RUnit
 requirements:
   host:
-    - 'bioconductor-affyio >=1.70.0,<1.71.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-illuminaio >=0.42.0,<0.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-affyio >=1.72.0,<1.73.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-illuminaio >=0.44.0,<0.45.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-beanplot
     - r-ellipse
@@ -40,13 +41,13 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-affyio >=1.70.0,<1.71.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-illuminaio >=0.42.0,<0.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-affyio >=1.72.0,<1.73.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-illuminaio >=0.44.0,<0.45.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-beanplot
     - r-ellipse
diff --git a/recipes/bioconductor-crossmeta/meta.yaml b/recipes/bioconductor-crossmeta/meta.yaml
index 75049a5143101..2175cb526022a 100644
--- a/recipes/bioconductor-crossmeta/meta.yaml
+++ b/recipes/bioconductor-crossmeta/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "crossmeta" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: eb215cbcc990a0a74352342c1c952885
+  md5: 5bc5c865fba1a04864f9a0643adf041f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-crossmeta", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, lydata, org.Hs.eg.db, testthat
 # SystemRequirements: libxml2: libxml2-dev (deb), libxml2-devel (rpm) libcurl: libcurl4-openssl-dev (deb), libcurl-devel (rpm) openssl: libssl-dev (deb), openssl-devel (rpm), libssl_dev (csw), openssl@1.1 (brew)
 requirements:
   host:
-    - 'bioconductor-affxparser >=1.72.0,<1.73.0'
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-affxparser >=1.74.0,<1.75.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - 'r-biocmanager >=1.30.4'
     - 'r-data.table >=1.10.4'
@@ -54,16 +55,16 @@ requirements:
     - r-tibble
     - 'r-xml >=3.98.1.17'
   run:
-    - 'bioconductor-affxparser >=1.72.0,<1.73.0'
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-affxparser >=1.74.0,<1.75.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - 'r-biocmanager >=1.30.4'
     - 'r-data.table >=1.10.4'
diff --git a/recipes/bioconductor-csar/meta.yaml b/recipes/bioconductor-csar/meta.yaml
index 9b25df6a1a1a3..8a7ab11fb87da 100644
--- a/recipes/bioconductor-csar/meta.yaml
+++ b/recipes/bioconductor-csar/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.52.0" %}
+{% set version = "1.54.0" %}
 {% set name = "CSAR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 796d8b24ecf0424a0227ec54124628fa
+  md5: cf22689abca527406f9f2b333739d7bc
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-csar", max_pin="x.x") }}'
 # Suggests: ShortRead, Biostrings
 requirements:
   host:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   build:
     - {{ compiler('c') }}
@@ -45,3 +46,8 @@ about:
   summary: 'Statistical tools for the analysis of ChIP-seq data'
   description: 'Statistical tools for ChIP-seq data analysis. The package includes the statistical method described in Kaufmann et al. (2009) PLoS Biology: 7(4):e1000090. Briefly, Taking the average DNA fragment size subjected to sequencing into account, the software calculates genomic single-nucleotide read-enrichment values. After normalization, sample and control are compared using a test based on the Poisson distribution. Test statistic thresholds to control the false discovery rate are obtained through random permutation.'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
diff --git a/recipes/bioconductor-csaw/meta.yaml b/recipes/bioconductor-csaw/meta.yaml
index ae24e0b28d739..444eb55b8a0ec 100644
--- a/recipes/bioconductor-csaw/meta.yaml
+++ b/recipes/bioconductor-csaw/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "csaw" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,48 +11,49 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 2303363515d9358462fa8670bddbb041
+  md5: 07ad4af3be8e5e799b06826cc97a449e
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-csaw", max_pin="x.x") }}'
 # Suggests: AnnotationDbi, org.Mm.eg.db, TxDb.Mmusculus.UCSC.mm10.knownGene, testthat, GenomicFeatures, GenomicAlignments, knitr, BiocStyle, rmarkdown, BiocManager
 # SystemRequirements: C++11, GNU make
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-metapod >=1.8.0,<1.9.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-metapod >=1.10.0,<1.11.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-matrix
     - r-rcpp
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-metapod >=1.8.0,<1.9.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-metapod >=1.10.0,<1.11.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-matrix
     - r-rcpp
@@ -65,11 +66,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-3
+  license: GPL-3.0-only
   summary: 'ChIP-Seq Analysis with Windows'
   description: 'Detection of differentially bound regions in ChIP-seq data with sliding windows, with methods for normalization and proper FDR control.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:csaw
   parent_recipe:
diff --git a/recipes/bioconductor-csdr/meta.yaml b/recipes/bioconductor-csdr/meta.yaml
index 58600b6179b91..8f28df3937931 100644
--- a/recipes/bioconductor-csdr/meta.yaml
+++ b/recipes/bioconductor-csdr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "csdR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3a19cb2405a198584f25a03df4b0569d
+  md5: 02132c2d953434d0bb7de9b58e8b5769
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-csdr", max_pin="x.x") }}'
 # Suggests: rmarkdown, knitr, testthat (>= 3.0.0), BiocStyle, magrittr, igraph, dplyr
 requirements:
   host:
diff --git a/recipes/bioconductor-cssq/meta.yaml b/recipes/bioconductor-cssq/meta.yaml
index 411139143feae..52270a9d7e002 100644
--- a/recipes/bioconductor-cssq/meta.yaml
+++ b/recipes/bioconductor-cssq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.1" %}
+{% set version = "1.14.0" %}
 {% set name = "CSSQ" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5b33aa7496759ea3e7af2e4670956254
+  md5: d9a6f6200f67cc06173c30dcd6775e5a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cssq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, markdown
 requirements:
   host:
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
   run:
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
 test:
diff --git a/recipes/bioconductor-ctc/meta.yaml b/recipes/bioconductor-ctc/meta.yaml
index 00893b46b8267..67bcc2e93f176 100644
--- a/recipes/bioconductor-ctc/meta.yaml
+++ b/recipes/bioconductor-ctc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.74.0" %}
+{% set version = "1.76.0" %}
 {% set name = "ctc" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 56004c787150f55f1ae6b3c5b1452c3a
+  md5: ea94b8b636b26d4f827ecd4569804d1e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ctc", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-ctcf/meta.yaml b/recipes/bioconductor-ctcf/meta.yaml
index eed0fcb6af070..1c4437ce61d37 100644
--- a/recipes/bioconductor-ctcf/meta.yaml
+++ b/recipes/bioconductor-ctcf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.11" %}
 {% set name = "CTCF" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 5ec44245864395de390e68fa56e465af
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ctcf", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, rmarkdown, knitr, AnnotationHub, GenomicRanges, plyranges, sessioninfo
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ctdata/meta.yaml b/recipes/bioconductor-ctdata/meta.yaml
index 03168c81f245e..051c707054ba5 100644
--- a/recipes/bioconductor-ctdata/meta.yaml
+++ b/recipes/bioconductor-ctdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.2" %}
+{% set version = "1.2.0" %}
 {% set name = "CTdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e5666dc0fc962f452b36e1469947dd28
+  md5: d130308cf078329f4cc6a1cc8055475d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ctdata", max_pin="x.x") }}'
   noarch: generic
-# Suggests: testthat (>= 3.0.0), DT, BiocStyle, knitr, rmarkdown, SummarizedExperiment
+# Suggests: testthat (>= 3.0.0), DT, BiocStyle, knitr, rmarkdown, SummarizedExperiment, SingleCellExperiment
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-ctdquerier/meta.yaml b/recipes/bioconductor-ctdquerier/meta.yaml
index a66cbb012eee3..9cfc17e349b4e 100644
--- a/recipes/bioconductor-ctdquerier/meta.yaml
+++ b/recipes/bioconductor-ctdquerier/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.8.0" %}
+{% set version = "2.10.0" %}
 {% set name = "CTDquerier" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0ae71eaec9c380d827d4ba3f6c6034be
+  md5: 42c5654d014714b22e5c1c2c2e7a2118
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ctdquerier", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - r-gridextra
@@ -31,8 +32,8 @@ requirements:
     - r-stringdist
     - r-stringr
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - r-gridextra
diff --git a/recipes/bioconductor-ctrap/meta.yaml b/recipes/bioconductor-ctrap/meta.yaml
index a589d5f0d98b3..07edfeb916d8a 100644
--- a/recipes/bioconductor-ctrap/meta.yaml
+++ b/recipes/bioconductor-ctrap/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "cTRAP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 69a1a37a36696d321c04734075ec6802
+  md5: 049de878508ce8d8031d7d93f6a1fd01
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ctrap", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, covr, rmarkdown, spelling, biomaRt, remotes
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
     - r-base
     - r-binr
     - r-cowplot
@@ -50,11 +51,11 @@ requirements:
     - r-shinycssloaders
     - r-tibble
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
     - r-base
     - r-binr
     - r-cowplot
diff --git a/recipes/bioconductor-ctsge/meta.yaml b/recipes/bioconductor-ctsge/meta.yaml
index 8af0af8538976..44c7878302301 100644
--- a/recipes/bioconductor-ctsge/meta.yaml
+++ b/recipes/bioconductor-ctsge/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "ctsGE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: eb8561fe9bd7f3b4eccbbb40f8573ede
+  md5: 31cfbfb8002cbb54747b9a4a41fb17d2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ctsge", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, dplyr, DT, GEOquery, knitr, pander, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-ccapp
     - r-ggplot2
@@ -29,7 +30,7 @@ requirements:
     - r-shiny
     - r-stringr
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-ccapp
     - r-ggplot2
diff --git a/recipes/bioconductor-ctsv/meta.yaml b/recipes/bioconductor-ctsv/meta.yaml
index bf775fa227b23..209549d623061 100644
--- a/recipes/bioconductor-ctsv/meta.yaml
+++ b/recipes/bioconductor-ctsv/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "CTSV" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 343c9934a4e4ad3ea145927cb7605bad
+  md5: 4a3f8c7b5398449ea01b312ed7da1f43
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ctsv", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-knitr
     - r-pscl
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-knitr
     - r-pscl
diff --git a/recipes/bioconductor-cummerbund/meta.yaml b/recipes/bioconductor-cummerbund/meta.yaml
index e56d26fdc5b6b..b02fb64575016 100644
--- a/recipes/bioconductor-cummerbund/meta.yaml
+++ b/recipes/bioconductor-cummerbund/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.42.0" %}
+{% set version = "2.44.0" %}
 {% set name = "cummeRbund" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5221eb3a427c7a29beb2404715794561
+  md5: 367d124a098eca55a6da149e35621c65
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cummerbund", max_pin="x.x") }}'
   noarch: generic
 # Suggests: cluster, plyr, NMFN, stringr, GenomicFeatures, GenomicRanges, rjson
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-fastcluster
     - r-ggplot2
@@ -33,11 +34,11 @@ requirements:
     - r-reshape2
     - r-rsqlite
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-fastcluster
     - r-ggplot2
diff --git a/recipes/bioconductor-curatedadipoarray/meta.yaml b/recipes/bioconductor-curatedadipoarray/meta.yaml
index 43353cd4929d2..771e50a148b5c 100644
--- a/recipes/bioconductor-curatedadipoarray/meta.yaml
+++ b/recipes/bioconductor-curatedadipoarray/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "curatedAdipoArray" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 84600c36847d6fff69d646f1ff65dcbd
+  md5: 109be77c099e9d7b6da437577f619a54
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-curatedadipoarray", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, ExperimentHub, SummarizedExperiment
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-curatedadipoarray/post-link.sh b/recipes/bioconductor-curatedadipoarray/post-link.sh
index 2720124804a73..7471a605b14e7 100644
--- a/recipes/bioconductor-curatedadipoarray/post-link.sh
+++ b/recipes/bioconductor-curatedadipoarray/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "curatedadipoarray-1.12.0"
+installBiocDataPackage.sh "curatedadipoarray-1.14.0"
diff --git a/recipes/bioconductor-curatedadipochip/meta.yaml b/recipes/bioconductor-curatedadipochip/meta.yaml
index 11bfe0d9b2e9f..5c312a510e921 100644
--- a/recipes/bioconductor-curatedadipochip/meta.yaml
+++ b/recipes/bioconductor-curatedadipochip/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "curatedAdipoChIP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9c5ffe38c97500d4fadfdd2c6af165b4
+  md5: 0074cb63250ac197dad12e4138d47463
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-curatedadipochip", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, GenomicFeatures, ChIPseeker, AnnotationDbi, S4Vectors, DESeq2, fastqcr, devtools, testthat, readr, dplyr, tidyr, ggplot2
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-curatedadipochip/post-link.sh b/recipes/bioconductor-curatedadipochip/post-link.sh
index c018890261d24..452dbadac0268 100644
--- a/recipes/bioconductor-curatedadipochip/post-link.sh
+++ b/recipes/bioconductor-curatedadipochip/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "curatedadipochip-1.16.0"
+installBiocDataPackage.sh "curatedadipochip-1.18.0"
diff --git a/recipes/bioconductor-curatedadiporna/meta.yaml b/recipes/bioconductor-curatedadiporna/meta.yaml
index 3ac6e6b4b45b8..b7c5d9884fddc 100644
--- a/recipes/bioconductor-curatedadiporna/meta.yaml
+++ b/recipes/bioconductor-curatedadiporna/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "curatedAdipoRNA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 81535f56828fc6043a8461b0f9e09ca7
+  md5: 61c2e750fc2cf09a6bde6c0bf46e6b8b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-curatedadiporna", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, DESeq2, fastqcr, devtools, testthat, readr, dplyr, tidyr, ggplot2, S4Vectors
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-curatedadiporna/post-link.sh b/recipes/bioconductor-curatedadiporna/post-link.sh
index cf9b4d8383a8c..71d70dbe2607b 100644
--- a/recipes/bioconductor-curatedadiporna/post-link.sh
+++ b/recipes/bioconductor-curatedadiporna/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "curatedadiporna-1.16.0"
+installBiocDataPackage.sh "curatedadiporna-1.18.0"
diff --git a/recipes/bioconductor-curatedatlasqueryr/build.sh b/recipes/bioconductor-curatedatlasqueryr/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-curatedatlasqueryr/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-curatedatlasqueryr/meta.yaml b/recipes/bioconductor-curatedatlasqueryr/meta.yaml
new file mode 100644
index 0000000000000..4599ae6b3e273
--- /dev/null
+++ b/recipes/bioconductor-curatedatlasqueryr/meta.yaml
@@ -0,0 +1,75 @@
+{% set version = "1.0.0" %}
+{% set name = "CuratedAtlasQueryR" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 21e5bf1d5aa58d59098176dca867c42c
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-curatedatlasqueryr", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: zellkonverter, rmarkdown, knitr, testthat, basilisk, arrow, reticulate, spelling, forcats, ggplot2, tidySingleCellExperiment, rprojroot
+requirements:
+  host:
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-assertthat
+    - r-base
+    - r-cli
+    - r-dbi
+    - 'r-dbplyr >=2.3.0'
+    - r-dplyr
+    - r-duckdb
+    - r-glue
+    - r-httr
+    - 'r-purrr >=1.0.0'
+    - r-rlang
+    - r-seurat
+    - r-seuratobject
+    - r-stringr
+    - r-tibble
+  run:
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-assertthat
+    - r-base
+    - r-cli
+    - r-dbi
+    - 'r-dbplyr >=2.3.0'
+    - r-dplyr
+    - r-duckdb
+    - r-glue
+    - r-httr
+    - 'r-purrr >=1.0.0'
+    - r-rlang
+    - r-seurat
+    - r-seuratobject
+    - r-stringr
+    - r-tibble
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'Queries the Human Cell Atlas'
+  description: 'Provides access to a copy of the Human Cell Atlas, but with harmonised metadata. This allows for uniform querying across numerous datasets within the Atlas using common fields such as cell type, tissue type, and patient ethnicity. Usage involves first querying the metadata table for cells of interest, and then downloading the corresponding cells into a SingleCellExperiment object.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-curatedbladderdata/meta.yaml b/recipes/bioconductor-curatedbladderdata/meta.yaml
index f911f00d9dc99..a19912b009d71 100644
--- a/recipes/bioconductor-curatedbladderdata/meta.yaml
+++ b/recipes/bioconductor-curatedbladderdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "curatedBladderData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7db958b1758a3b7bc3f2b552962ed51a
+  md5: bd8965c4ad49840b4985f90f3dc5a441
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-curatedbladderdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, survival, xtable, sva, genefilter, logging
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-curatedbladderdata/post-link.sh b/recipes/bioconductor-curatedbladderdata/post-link.sh
index 72edc5f4d75d6..a5a74357ee58b 100644
--- a/recipes/bioconductor-curatedbladderdata/post-link.sh
+++ b/recipes/bioconductor-curatedbladderdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "curatedbladderdata-1.36.0"
+installBiocDataPackage.sh "curatedbladderdata-1.38.0"
diff --git a/recipes/bioconductor-curatedbreastdata/meta.yaml b/recipes/bioconductor-curatedbreastdata/meta.yaml
index 24984a5870644..147d8dbd24191 100644
--- a/recipes/bioconductor-curatedbreastdata/meta.yaml
+++ b/recipes/bioconductor-curatedbreastdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.28.0" %}
+{% set version = "2.30.0" %}
 {% set name = "curatedBreastData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8e53cc4c883e3b3c94842727f34ad6a6
+  md5: 41383ff9e1295448ec0e8004789ab9d5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-curatedbreastdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
     - r-base
     - r-ggplot2
     - r-xml
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
     - r-base
     - r-ggplot2
     - r-xml
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-curatedbreastdata/post-link.sh b/recipes/bioconductor-curatedbreastdata/post-link.sh
index 08d6436b4b509..58788177cdca3 100644
--- a/recipes/bioconductor-curatedbreastdata/post-link.sh
+++ b/recipes/bioconductor-curatedbreastdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "curatedbreastdata-2.28.0"
+installBiocDataPackage.sh "curatedbreastdata-2.30.0"
diff --git a/recipes/bioconductor-curatedcrcdata/meta.yaml b/recipes/bioconductor-curatedcrcdata/meta.yaml
index 9e1ade1a1bcd2..56546d4ac282f 100644
--- a/recipes/bioconductor-curatedcrcdata/meta.yaml
+++ b/recipes/bioconductor-curatedcrcdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.32.0" %}
+{% set version = "2.34.0" %}
 {% set name = "curatedCRCData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c88686b133a9f30f4904dc4e706ef5c8
+  md5: c36bf5dbc0970503f4137b55e8c65534
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-curatedcrcdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: survival, RUnit, metafor, genefilter, logging, sva, xtable, futile.logger, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-nlme
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-nlme
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-curatedcrcdata/post-link.sh b/recipes/bioconductor-curatedcrcdata/post-link.sh
index a684c9f7a3324..fd84280190a21 100644
--- a/recipes/bioconductor-curatedcrcdata/post-link.sh
+++ b/recipes/bioconductor-curatedcrcdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "curatedcrcdata-2.32.0"
+installBiocDataPackage.sh "curatedcrcdata-2.34.0"
diff --git a/recipes/bioconductor-curatedmetagenomicdata/meta.yaml b/recipes/bioconductor-curatedmetagenomicdata/meta.yaml
index fd3c6cc2e1a5c..8f7bf4f49af2c 100644
--- a/recipes/bioconductor-curatedmetagenomicdata/meta.yaml
+++ b/recipes/bioconductor-curatedmetagenomicdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.8.0" %}
+{% set version = "3.10.0" %}
 {% set name = "curatedMetagenomicData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f24faacda7b263f1bcde098dbffa5f8f
+  md5: 39c08149fe4261d4961ff1235825ae97
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-curatedmetagenomicdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, DT, knitr, readr, rmarkdown, scater, testthat, utils, uwot, vegan
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-mia >=1.8.0,<1.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-treesummarizedexperiment >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-mia >=1.10.0,<1.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-treesummarizedexperiment >=2.10.0,<2.11.0'
     - r-base
     - r-dplyr
     - r-magrittr
@@ -37,12 +38,12 @@ requirements:
     - r-tidyr
     - r-tidyselect
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-mia >=1.8.0,<1.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-treesummarizedexperiment >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-mia >=1.10.0,<1.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-treesummarizedexperiment >=2.10.0,<2.11.0'
     - r-base
     - r-dplyr
     - r-magrittr
@@ -53,7 +54,7 @@ requirements:
     - r-tidyr
     - r-tidyselect
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-curatedmetagenomicdata/post-link.sh b/recipes/bioconductor-curatedmetagenomicdata/post-link.sh
index 6e0440addbb55..1766abe724ad8 100644
--- a/recipes/bioconductor-curatedmetagenomicdata/post-link.sh
+++ b/recipes/bioconductor-curatedmetagenomicdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "curatedmetagenomicdata-3.8.0"
+installBiocDataPackage.sh "curatedmetagenomicdata-3.10.0"
diff --git a/recipes/bioconductor-curatedovariandata/meta.yaml b/recipes/bioconductor-curatedovariandata/meta.yaml
index a204bc966f9f5..ae3f6134fef68 100644
--- a/recipes/bioconductor-curatedovariandata/meta.yaml
+++ b/recipes/bioconductor-curatedovariandata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.1" %}
 {% set name = "curatedOvarianData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0cbda3a714637304ffcc38aa91588c86
+  md5: 7651ff7abb11057b3ceec8f869e259d6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-curatedovariandata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: survival, RUnit, metafor, genefilter, logging, sva, xtable, futile.logger, BiocStyle
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-curatedovariandata/post-link.sh b/recipes/bioconductor-curatedovariandata/post-link.sh
index b8688a68dcdc4..2dca151523690 100644
--- a/recipes/bioconductor-curatedovariandata/post-link.sh
+++ b/recipes/bioconductor-curatedovariandata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "curatedovariandata-1.38.0"
+installBiocDataPackage.sh "curatedovariandata-1.40.1"
diff --git a/recipes/bioconductor-curatedtbdata/meta.yaml b/recipes/bioconductor-curatedtbdata/meta.yaml
index e1559e07a2936..86218926bfa5d 100644
--- a/recipes/bioconductor-curatedtbdata/meta.yaml
+++ b/recipes/bioconductor-curatedtbdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "curatedTBData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d09277f807e04495c582052e25930d02
+  md5: 190a770c4f5df45cf722b7ee287a2384
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-curatedtbdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, DT, dplyr, HGNChelper, knitr, methods, rmarkdown, SummarizedExperiment, sva, testthat
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
     - r-base
     - r-rlang
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
     - r-base
     - r-rlang
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-curatedtbdata/post-link.sh b/recipes/bioconductor-curatedtbdata/post-link.sh
index e9fe0f3a58674..460b16dba5ca4 100644
--- a/recipes/bioconductor-curatedtbdata/post-link.sh
+++ b/recipes/bioconductor-curatedtbdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "curatedtbdata-1.6.0"
+installBiocDataPackage.sh "curatedtbdata-1.8.0"
diff --git a/recipes/bioconductor-curatedtcgadata/meta.yaml b/recipes/bioconductor-curatedtcgadata/meta.yaml
index 30a3fed4b41ae..a2dfc71c781c2 100644
--- a/recipes/bioconductor-curatedtcgadata/meta.yaml
+++ b/recipes/bioconductor-curatedtcgadata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.2" %}
+{% set version = "1.24.0" %}
 {% set name = "curatedTCGAData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 066107da416bfad28b75ee3488dbdad0
+  md5: de450b3bbb137b63a1ca46ae81a96909
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-curatedtcgadata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, RaggedExperiment, readr, rmarkdown, TCGAutils, testthat
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-curatedtcgadata/post-link.sh b/recipes/bioconductor-curatedtcgadata/post-link.sh
index 9431278b28ca6..151fe01e10b62 100644
--- a/recipes/bioconductor-curatedtcgadata/post-link.sh
+++ b/recipes/bioconductor-curatedtcgadata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "curatedtcgadata-1.22.2"
+installBiocDataPackage.sh "curatedtcgadata-1.24.0"
diff --git a/recipes/bioconductor-customcmpdb/meta.yaml b/recipes/bioconductor-customcmpdb/meta.yaml
index 94ee55331b883..b6f9d4baff3ab 100644
--- a/recipes/bioconductor-customcmpdb/meta.yaml
+++ b/recipes/bioconductor-customcmpdb/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "customCMPdb" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4a2da348c8192136738fff3c390a390b
+  md5: 1aa1425d87c45ac42f2c7ed808a7a583
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-customcmpdb", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, BiocStyle
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-chemminer >=3.52.0,<3.53.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-chemminer >=3.54.0,<3.55.0'
     - r-base
     - r-rappdirs
     - r-rsqlite
     - r-xml
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-chemminer >=3.52.0,<3.53.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-chemminer >=3.54.0,<3.55.0'
     - r-base
     - r-rappdirs
     - r-rsqlite
diff --git a/recipes/bioconductor-customprodb/meta.yaml b/recipes/bioconductor-customprodb/meta.yaml
index 422fecfca8d82..a90f2ffde8365 100644
--- a/recipes/bioconductor-customprodb/meta.yaml
+++ b/recipes/bioconductor-customprodb/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.41.0" %}
 {% set name = "customProDB" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 51e83c7af0198e0ac93b5aadb34d50d5
+  md5: 08f0eb20ac48a7b8f1e27b45522dd029
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-customprodb", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RMariaDB, BSgenome.Hsapiens.UCSC.hg19
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-ahocorasicktrie
     - r-base
     - r-dbi
@@ -41,18 +42,18 @@ requirements:
     - r-rsqlite
     - r-stringr
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-ahocorasicktrie
     - r-base
     - r-dbi
diff --git a/recipes/bioconductor-cyanofilter/meta.yaml b/recipes/bioconductor-cyanofilter/meta.yaml
index 2aeab900d9dd4..35f0db1c71cb4 100644
--- a/recipes/bioconductor-cyanofilter/meta.yaml
+++ b/recipes/bioconductor-cyanofilter/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "cyanoFilter" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 368e6b94dab2f6f3e34e633dc2d6a14c
+  md5: a562257b012ddcf28b78c5cee7e85fa3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cyanofilter", max_pin="x.x") }}'
   noarch: generic
 # Suggests: magrittr, dplyr, purrr, knitr, stringr, rmarkdown, tidyr
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-flowclust >=3.38.0,<3.39.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowdensity >=1.34.0,<1.35.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-flowclust >=3.40.0,<3.41.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowdensity >=1.36.0,<1.37.0'
     - r-base
     - r-cytometree
     - r-ggally
     - r-ggplot2
     - r-mrfdepth
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-flowclust >=3.38.0,<3.39.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowdensity >=1.34.0,<1.35.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-flowclust >=3.40.0,<3.41.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowdensity >=1.36.0,<1.37.0'
     - r-base
     - r-cytometree
     - r-ggally
diff --git a/recipes/bioconductor-cycle/meta.yaml b/recipes/bioconductor-cycle/meta.yaml
index 860242e4bf1b7..f9388f490a65e 100644
--- a/recipes/bioconductor-cycle/meta.yaml
+++ b/recipes/bioconductor-cycle/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.54.0" %}
+{% set version = "1.56.0" %}
 {% set name = "cycle" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 04088083f69f37fd4bf35ad28e0b57ae
+  md5: 8c659d2ae2fb2b31f4b6dd07d68873be
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cycle", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-mfuzz >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-mfuzz >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-mfuzz >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-mfuzz >=2.62.0,<2.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-cydar/meta.yaml b/recipes/bioconductor-cydar/meta.yaml
index 9e2835f0bcff6..4f5ab55d02786 100644
--- a/recipes/bioconductor-cydar/meta.yaml
+++ b/recipes/bioconductor-cydar/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "cydar" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 7b8dbb3a9113d2bba4b2a9f656e8edb1
+  md5: b804632cc0742b1e2f9910353a6ed75d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cydar", max_pin="x.x") }}'
 # Suggests: ncdfFlow, testthat, rmarkdown, knitr, edgeR, limma, glmnet, BiocStyle, flowStats
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-rcpp
     - r-shiny
@@ -36,14 +37,14 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-rcpp
     - r-shiny
diff --git a/recipes/bioconductor-cyp450cdf/meta.yaml b/recipes/bioconductor-cyp450cdf/meta.yaml
index 24e5aa29562cf..278e2ac3086d0 100644
--- a/recipes/bioconductor-cyp450cdf/meta.yaml
+++ b/recipes/bioconductor-cyp450cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "cyp450cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 7923c4d24b7b654d0f59d52ed2258eb9
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cyp450cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-cytodx/meta.yaml b/recipes/bioconductor-cytodx/meta.yaml
index b7755fcbf70b2..fa2f5ec95a63d 100644
--- a/recipes/bioconductor-cytodx/meta.yaml
+++ b/recipes/bioconductor-cytodx/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "CytoDx" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 34c6cd6a96a62551f4ca24cb91b76842
+  md5: 86d2f225be6ebdaecd3aa4960e443796
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cytodx", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-doparallel
     - r-dplyr
@@ -29,7 +30,7 @@ requirements:
     - r-rpart
     - r-rpart.plot
   run:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-doparallel
     - r-dplyr
diff --git a/recipes/bioconductor-cytofpower/meta.yaml b/recipes/bioconductor-cytofpower/meta.yaml
index a2083e7d3ff5b..981d052fa8067 100644
--- a/recipes/bioconductor-cytofpower/meta.yaml
+++ b/recipes/bioconductor-cytofpower/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "CyTOFpower" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b01cc449a6fe4426458624c5705bcec9
+  md5: ea70d698bf8ba363250de04f634c5f74
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cytofpower", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 3.0.0), BiocStyle, knitr
 requirements:
   host:
-    - 'bioconductor-cytoglmm >=1.8.0,<1.9.0'
-    - 'bioconductor-diffcyt >=1.20.0,<1.21.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-cytoglmm >=1.10.0,<1.11.0'
+    - 'bioconductor-diffcyt >=1.22.0,<1.23.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-dt
@@ -37,9 +38,9 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-cytoglmm >=1.8.0,<1.9.0'
-    - 'bioconductor-diffcyt >=1.20.0,<1.21.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-cytoglmm >=1.10.0,<1.11.0'
+    - 'bioconductor-diffcyt >=1.22.0,<1.23.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-dt
diff --git a/recipes/bioconductor-cytofqc/meta.yaml b/recipes/bioconductor-cytofqc/meta.yaml
index d21510eafbdd4..47f974c4c82e4 100644
--- a/recipes/bioconductor-cytofqc/meta.yaml
+++ b/recipes/bioconductor-cytofqc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "cytofQC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d0505813678c5c80055b22702fd6efc1
+  md5: 7a4e866c0e57f639b41828c211aff31f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cytofqc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: gridExtra, knitr, RColorBrewer, testthat, uwot
 requirements:
   host:
-    - 'bioconductor-catalyst >=1.24.0,<1.25.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-catalyst >=1.26.0,<1.27.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-e1071
     - r-eztune
@@ -37,11 +38,11 @@ requirements:
     - r-rmarkdown
     - r-ssc
   run:
-    - 'bioconductor-catalyst >=1.24.0,<1.25.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-catalyst >=1.26.0,<1.27.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-e1071
     - r-eztune
diff --git a/recipes/bioconductor-cytoglmm/meta.yaml b/recipes/bioconductor-cytoglmm/meta.yaml
index f4c4346d39a43..7c2e9656c33dc 100644
--- a/recipes/bioconductor-cytoglmm/meta.yaml
+++ b/recipes/bioconductor-cytoglmm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "CytoGLMM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c5784f488db9c90aee9aaef89bb2979f
+  md5: 3a4b95062a82da6afe217f20ef905460
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cytoglmm", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-caret
     - r-cowplot
@@ -44,7 +45,7 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-caret
     - r-cowplot
diff --git a/recipes/bioconductor-cytokernel/meta.yaml b/recipes/bioconductor-cytokernel/meta.yaml
index 07981eccb8167..e78587f65500f 100644
--- a/recipes/bioconductor-cytokernel/meta.yaml
+++ b/recipes/bioconductor-cytokernel/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "cytoKernel" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f5a4d7c512bf35c94d3ff2ba67915455
+  md5: 2e1e2b8d2c545a69a0cec180964f2fd9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cytokernel", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, BiocStyle, testthat
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-ashr
     - r-base
     - r-circlize
@@ -35,10 +36,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-ashr
     - r-base
     - r-circlize
diff --git a/recipes/bioconductor-cytolib/meta.yaml b/recipes/bioconductor-cytolib/meta.yaml
index fab17798770e4..d3c88990f4372 100644
--- a/recipes/bioconductor-cytolib/meta.yaml
+++ b/recipes/bioconductor-cytolib/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.12.0" %}
+{% set version = "2.14.1" %}
 {% set name = "cytolib" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 9f90833841459092d549952e5d99124e
+  md5: 32b6560c381660e2ed9aa1e7b6ab84f9
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cytolib", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown
 # SystemRequirements: GNU make, C++11
 requirements:
   host:
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
-    - 'bioconductor-rprotobuflib >=2.12.0,<2.13.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
+    - 'bioconductor-rprotobuflib >=2.14.0,<2.15.0'
     - r-base
-    - 'r-bh >=1.75.0.0'
+    - 'r-bh >=1.81.0.0'
     - libblas
     - liblapack
   run:
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
-    - 'bioconductor-rprotobuflib >=2.12.0,<2.13.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
+    - 'bioconductor-rprotobuflib >=2.14.0,<2.15.0'
     - r-base
-    - 'r-bh >=1.75.0.0'
+    - 'r-bh >=1.81.0.0'
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
@@ -42,11 +43,15 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: AGPL-3.0-only
+  license: GPL-3.0-only
   summary: 'C++ infrastructure for representing and interacting with the gated cytometry data'
   description: 'This package provides the core data structure and API to represent and interact with the gated cytometry data.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
   parent_recipe:
     name: bioconductor-cytolib
     path: recipes/bioconductor-cytolib
diff --git a/recipes/bioconductor-cytomapper/meta.yaml b/recipes/bioconductor-cytomapper/meta.yaml
index c120d00160aca..cd40bb5f75e8b 100644
--- a/recipes/bioconductor-cytomapper/meta.yaml
+++ b/recipes/bioconductor-cytomapper/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "cytomapper" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: a792c54688d69d44dbf91fd86d900a08
+  md5: 140e57707c43aeb7bd3b2e48b634464a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cytomapper", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, markdown, cowplot, testthat, shinytest
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggbeeswarm
     - r-ggplot2
@@ -43,15 +44,15 @@ requirements:
     - r-svgpanzoom
     - r-viridis
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggbeeswarm
     - r-ggplot2
diff --git a/recipes/bioconductor-cytomem/meta.yaml b/recipes/bioconductor-cytomem/meta.yaml
index abdb5dec2f33b..5c3bb8333f7b3 100644
--- a/recipes/bioconductor-cytomem/meta.yaml
+++ b/recipes/bioconductor-cytomem/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "cytoMEM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5727668f7e144170c6b66ed00a1fce77
+  md5: 4a407b89f327c4c88301e81f982598f9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cytomem", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-gplots
     - r-matrixstats
   run:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-gplots
     - r-matrixstats
diff --git a/recipes/bioconductor-cytoml/meta.yaml b/recipes/bioconductor-cytoml/meta.yaml
index fb7b3b6300c72..ee27b56fde053 100644
--- a/recipes/bioconductor-cytoml/meta.yaml
+++ b/recipes/bioconductor-cytoml/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.12.0" %}
+{% set version = "2.14.0" %}
 {% set name = "CytoML" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5118f217fc4d383753ddb7c749b5c949
+  md5: 4b0060416cdeef7876cb9aaeb81dbaf7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cytoml", max_pin="x.x") }}'
 # Suggests: testthat, flowWorkspaceData , knitr, rmarkdown, parallel
 # SystemRequirements: xml2, GNU make, C++11
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-cytolib >=2.12.0,<2.13.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowworkspace >=4.12.0,<4.13.0'
-    - 'bioconductor-ggcyto >=1.28.0,<1.29.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-opencyto >=2.12.0,<2.13.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
-    - 'bioconductor-rprotobuflib >=2.12.0,<2.13.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-cytolib >=2.14.0,<2.15.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowworkspace >=4.14.0,<4.15.0'
+    - 'bioconductor-ggcyto >=1.30.0,<1.31.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-opencyto >=2.14.0,<2.15.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
+    - 'bioconductor-rprotobuflib >=2.14.0,<2.15.0'
     - r-base
     - 'r-bh >=1.62.0-1'
     - r-cpp11
@@ -45,17 +46,17 @@ requirements:
     - liblapack
     - libxml2
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-cytolib >=2.12.0,<2.13.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowworkspace >=4.12.0,<4.13.0'
-    - 'bioconductor-ggcyto >=1.28.0,<1.29.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-opencyto >=2.12.0,<2.13.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
-    - 'bioconductor-rprotobuflib >=2.12.0,<2.13.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-cytolib >=2.14.0,<2.15.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowworkspace >=4.14.0,<4.15.0'
+    - 'bioconductor-ggcyto >=1.30.0,<1.31.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-opencyto >=2.14.0,<2.15.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
+    - 'bioconductor-rprotobuflib >=2.14.0,<2.15.0'
     - r-base
     - 'r-bh >=1.62.0-1'
     - r-cpp11
diff --git a/recipes/bioconductor-cytopipeline/meta.yaml b/recipes/bioconductor-cytopipeline/meta.yaml
index 5fbad5f102509..7e23057f3914e 100644
--- a/recipes/bioconductor-cytopipeline/meta.yaml
+++ b/recipes/bioconductor-cytopipeline/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.2" %}
+{% set version = "1.2.0" %}
 {% set name = "CytoPipeline" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 03008ccf1f86b39cc48a5f9fa82ae3a2
+  md5: a4ed3b88553c7115d7dce368a0fda5a5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cytopipeline", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 3.0.0), vdiffr, diffviewer, knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-flowai >=1.30.0,<1.31.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-ggcyto >=1.28.0,<1.29.0'
-    - 'bioconductor-peacoqc >=1.10.0,<1.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-flowai >=1.32.0,<1.33.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-ggcyto >=1.30.0,<1.31.0'
+    - 'bioconductor-peacoqc >=1.12.0,<1.13.0'
     - r-base
     - r-diagram
     - 'r-ggplot2 >=3.4.1'
@@ -35,12 +36,12 @@ requirements:
     - r-scales
     - r-withr
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-flowai >=1.30.0,<1.31.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-ggcyto >=1.28.0,<1.29.0'
-    - 'bioconductor-peacoqc >=1.10.0,<1.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-flowai >=1.32.0,<1.33.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-ggcyto >=1.30.0,<1.31.0'
+    - 'bioconductor-peacoqc >=1.12.0,<1.13.0'
     - r-base
     - r-diagram
     - 'r-ggplot2 >=3.4.1'
diff --git a/recipes/bioconductor-cytopipelinegui/build.sh b/recipes/bioconductor-cytopipelinegui/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-cytopipelinegui/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-cytopipelinegui/meta.yaml b/recipes/bioconductor-cytopipelinegui/meta.yaml
new file mode 100644
index 0000000000000..de5a7ec5baba2
--- /dev/null
+++ b/recipes/bioconductor-cytopipelinegui/meta.yaml
@@ -0,0 +1,47 @@
+{% set version = "1.0.0" %}
+{% set name = "CytoPipelineGUI" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: fb6a6a7aad638be11919a144f3d9907a
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cytopipelinegui", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: testthat (>= 3.0.0), vdiffr, diffviewer, knitr, rmarkdown, BiocStyle, patchwork
+requirements:
+  host:
+    - 'bioconductor-cytopipeline >=1.2.0,<1.3.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - r-base
+    - r-ggplot2
+    - r-plotly
+    - r-shiny
+  run:
+    - 'bioconductor-cytopipeline >=1.2.0,<1.3.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - r-base
+    - r-ggplot2
+    - r-plotly
+    - r-shiny
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'GPL (>=3) | file LICENSE'
+  summary: 'GUI''s for visualization of flow cytometry data analysis pipelines'
+  description: 'This package is the companion of the `CytoPipeline` package. It provides GUI''s (shiny apps) for the visualization of flow cytometry data analysis pipelines that are run with `CytoPipeline`. Two shiny applications are provided, i.e. an interactive flow frame assessment and comparison tool and an interactive scale transformations visualization and adjustment tool.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-cytoviewer/meta.yaml b/recipes/bioconductor-cytoviewer/meta.yaml
index be640d04c0d65..dbf9da026b8dd 100644
--- a/recipes/bioconductor-cytoviewer/meta.yaml
+++ b/recipes/bioconductor-cytoviewer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "cytoviewer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: def4b0774e3872eb4cca490bd369318e
+  md5: dc34f69f53490911e6f621d76db69f4c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-cytoviewer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, markdown, testthat
 requirements:
   host:
-    - 'bioconductor-cytomapper >=1.12.0,<1.13.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-cytomapper >=1.14.0,<1.15.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-archive
     - r-base
     - r-colourpicker
@@ -37,11 +38,11 @@ requirements:
     - r-svgpanzoom
     - r-viridis
   run:
-    - 'bioconductor-cytomapper >=1.12.0,<1.13.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-cytomapper >=1.14.0,<1.15.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-archive
     - r-base
     - r-colourpicker
diff --git a/recipes/bioconductor-dada2/meta.yaml b/recipes/bioconductor-dada2/meta.yaml
index 34e6608a6fe44..6e500493c1345 100644
--- a/recipes/bioconductor-dada2/meta.yaml
+++ b/recipes/bioconductor-dada2/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "dada2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 8825d2a5c14a5d9ad3482743da42a215
+  md5: 096baf34b4618af27b1b430945d3a189
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dada2", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, rmarkdown
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - 'r-ggplot2 >=2.1.0'
     - 'r-rcpp >=0.12.0'
@@ -34,11 +35,11 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - 'r-ggplot2 >=2.1.0'
     - 'r-rcpp >=0.12.0'
diff --git a/recipes/bioconductor-daglogo/meta.yaml b/recipes/bioconductor-daglogo/meta.yaml
index cba07b792c916..0e97dccda1777 100644
--- a/recipes/bioconductor-daglogo/meta.yaml
+++ b/recipes/bioconductor-daglogo/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "dagLogo" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 143a623abf782e42e9c0ddf40f058e0d
+  md5: cb8662ee04599fa0076e344d2bf933d1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-daglogo", max_pin="x.x") }}'
   noarch: generic
 # Suggests: XML, grImport, grImport2, BiocStyle, knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-motifstack >=1.44.0,<1.45.0'
-    - 'bioconductor-uniprot.ws >=2.40.0,<2.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-motifstack >=1.46.0,<1.47.0'
+    - 'bioconductor-uniprot.ws >=2.42.0,<2.43.0'
     - r-base
     - r-httr
     - r-pheatmap
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-motifstack >=1.44.0,<1.45.0'
-    - 'bioconductor-uniprot.ws >=2.40.0,<2.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-motifstack >=1.46.0,<1.47.0'
+    - 'bioconductor-uniprot.ws >=2.42.0,<2.43.0'
     - r-base
     - r-httr
     - r-pheatmap
diff --git a/recipes/bioconductor-dama/meta.yaml b/recipes/bioconductor-dama/meta.yaml
index 94240cd993003..6f827bb23d349 100644
--- a/recipes/bioconductor-dama/meta.yaml
+++ b/recipes/bioconductor-dama/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "daMA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 491bcd2f0f98f6fae9a9914a1d9f39cd
+  md5: ec7e80e81b9d6eb5a76ce06c761bb7da
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dama", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-damefinder/meta.yaml b/recipes/bioconductor-damefinder/meta.yaml
index 393440433602d..070f5d8dc6e1a 100644
--- a/recipes/bioconductor-damefinder/meta.yaml
+++ b/recipes/bioconductor-damefinder/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "DAMEfinder" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 90d7b5746b798073b831599c1f17dddc
+  md5: 0f99003a20995ebd0c15fce1a407765f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-damefinder", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, rtracklayer, BSgenome.Hsapiens.UCSC.hg19
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bumphunter >=1.42.0,<1.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bumphunter >=1.44.0,<1.45.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-cowplot
     - r-ggplot2
@@ -41,18 +42,18 @@ requirements:
     - r-reshape2
     - r-stringr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bumphunter >=1.42.0,<1.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bumphunter >=1.44.0,<1.45.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-cowplot
     - r-ggplot2
diff --git a/recipes/bioconductor-damirseq/meta.yaml b/recipes/bioconductor-damirseq/meta.yaml
index ddfdd6adad361..8f31010215ab8 100644
--- a/recipes/bioconductor-damirseq/meta.yaml
+++ b/recipes/bioconductor-damirseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.12.0" %}
+{% set version = "2.14.0" %}
 {% set name = "DaMiRseq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 40d2de748f89528f9be59dff14696cdb
+  md5: 64986e7db314ddba69d156b35f974680
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-damirseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, testthat
 requirements:
   host:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edaseq >=2.34.0,<2.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edaseq >=2.36.0,<2.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-arm
     - r-base
     - r-caret
@@ -49,12 +50,12 @@ requirements:
     - r-reshape2
     - r-rsnns
   run:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edaseq >=2.34.0,<2.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edaseq >=2.36.0,<2.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-arm
     - r-base
     - r-caret
@@ -85,8 +86,7 @@ about:
   summary: 'Data Mining for RNA-seq data: normalization, feature selection and classification'
   description: 'The DaMiRseq package offers a tidy pipeline of data mining procedures to identify transcriptional biomarkers and exploit them for both binary and multi-class classification purposes. The package accepts any kind of data presented as a table of raw counts and allows including both continous and factorial variables that occur with the experimental setting. A series of functions enable the user to clean up the data by filtering genomic features and samples, to adjust data by identifying and removing the unwanted source of variation (i.e. batches and confounding factors) and to select the best predictors for modeling. Finally, a "stacking" ensemble learning technique is applied to build a robust classification model. Every step includes a checkpoint that the user may exploit to assess the effects of data management by looking at diagnostic plots, such as clustering and heatmaps, RLE boxplots, MDS or correlation plot.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
-
 extra:
   container:
-    extended-base: True
+    extended-base: true
 
diff --git a/recipes/bioconductor-dapar/meta.yaml b/recipes/bioconductor-dapar/meta.yaml
index bcc1f3cc45b40..3e5c822b5adaa 100644
--- a/recipes/bioconductor-dapar/meta.yaml
+++ b/recipes/bioconductor-dapar/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.2" %}
+{% set version = "1.34.2" %}
 {% set name = "DAPAR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,110 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 795af5225e1256f97f94864c8002aae6
+  md5: 98c2672a3b694f6d1989cdd4f00cd8e0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dapar", max_pin="x.x") }}'
   noarch: generic
-# Suggests: testthat, BiocStyle, AnnotationDbi, clusterProfiler, graph, diptest, cluster, vioplot, visNetwork, vsn, igraph, FactoMineR, factoextra, dendextend, parallel, doParallel, Mfuzz, apcluster, forcats, readxl, openxlsx, multcomp, purrr, tibble, knitr, norm, scales, tidyverse, cp4p, imp4p (>= 1.1),lme4, dplyr, limma, preprocessCore, stringr, tidyr, impute, gplots, grDevices, reshape2, graphics, stats, methods, ggplot2, RColorBrewer, Matrix, org.Sc.sgd.db
+# Suggests: testthat, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-dapardata >=1.30.0,<1.31.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-dapardata >=1.32.0,<1.33.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-mfuzz >=2.62.0,<2.63.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-org.sc.sgd.db >=3.18.0,<3.19.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
+    - r-apcluster
     - r-base
+    - r-cluster
+    - r-cp4p
+    - r-dendextend
+    - r-diptest
+    - r-doparallel
+    - r-dplyr
+    - r-factoextra
+    - r-factominer
+    - r-forcats
     - r-foreach
+    - r-ggplot2
+    - r-gplots
     - r-highcharter
+    - r-igraph
+    - r-imp4p
+    - r-knitr
+    - r-lme4
+    - r-matrix
+    - r-multcomp
+    - r-norm
+    - r-openxlsx
+    - r-purrr
+    - r-rcolorbrewer
+    - r-readxl
+    - r-reshape2
+    - r-scales
+    - r-stringr
+    - r-tibble
+    - r-tidyr
+    - r-tidyverse
+    - r-vioplot
+    - r-visnetwork
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-dapardata >=1.30.0,<1.31.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-dapardata >=1.32.0,<1.33.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-mfuzz >=2.62.0,<2.63.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-org.sc.sgd.db >=3.18.0,<3.19.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
+    - r-apcluster
     - r-base
+    - r-cluster
+    - r-cp4p
+    - r-dendextend
+    - r-diptest
+    - r-doparallel
+    - r-dplyr
+    - r-factoextra
+    - r-factominer
+    - r-forcats
     - r-foreach
+    - r-ggplot2
+    - r-gplots
     - r-highcharter
+    - r-igraph
+    - r-imp4p
+    - r-knitr
+    - r-lme4
+    - r-matrix
+    - r-multcomp
+    - r-norm
+    - r-openxlsx
+    - r-purrr
+    - r-rcolorbrewer
+    - r-readxl
+    - r-reshape2
+    - r-scales
+    - r-stringr
+    - r-tibble
+    - r-tidyr
+    - r-tidyverse
+    - r-vioplot
+    - r-visnetwork
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-dapardata/meta.yaml b/recipes/bioconductor-dapardata/meta.yaml
index c7ff1c8be6f2d..a88aae6c229f6 100644
--- a/recipes/bioconductor-dapardata/meta.yaml
+++ b/recipes/bioconductor-dapardata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "DAPARdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4d730f1b7ef4aab628882f7b9355c7b5
+  md5: 5906f180d2e824affe9f2850424c7612
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dapardata", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr, DAPAR
+# Suggests: knitr, DAPAR, BiocStyle
 requirements:
   host:
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
     - r-base
   run:
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-dapardata/post-link.sh b/recipes/bioconductor-dapardata/post-link.sh
index 0aa7a2b9ed549..3788427c5fce2 100644
--- a/recipes/bioconductor-dapardata/post-link.sh
+++ b/recipes/bioconductor-dapardata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "dapardata-1.30.0"
+installBiocDataPackage.sh "dapardata-1.32.0"
diff --git a/recipes/bioconductor-dart/meta.yaml b/recipes/bioconductor-dart/meta.yaml
index 16e9a3deaa689..a29f5a06cb466 100644
--- a/recipes/bioconductor-dart/meta.yaml
+++ b/recipes/bioconductor-dart/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "DART" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 54c28a2ba5064bfed75a4e9e631a65c7
+  md5: cc7bd6015b08890ec53f8004091c3bb5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dart", max_pin="x.x") }}'
   noarch: generic
 # Suggests: breastCancerVDX, breastCancerMAINZ, Biobase
 requirements:
diff --git a/recipes/bioconductor-data-packages/dataURLs.json b/recipes/bioconductor-data-packages/dataURLs.json
index 2c6d28f61bbda..2b5d690d1d314 100644
--- a/recipes/bioconductor-data-packages/dataURLs.json
+++ b/recipes/bioconductor-data-packages/dataURLs.json
@@ -1 +1 @@
-{"ritandata-1.20.0": {"urls": ["https://bioconductor.org/packages/3.15/data/experiment/src/contrib/RITANdata_1.20.0.tar.gz", "https://bioarchive.galaxyproject.org/RITANdata_1.20.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-ritandata/bioconductor-ritandata_1.20.0_src_all.tar.gz"], "md5": "4a9a65c5312893ef3bf279efd32d53f8", "fn": "RITANdata_1.20.0.tar.gz"}, "bioplex-1.3.4": {"urls": ["https://bioconductor.org/packages/3.16/data/experiment/src/contrib/BioPlex_1.3.4.tar.gz", "https://bioarchive.galaxyproject.org/BioPlex_1.3.4.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-bioplex/bioconductor-bioplex_1.3.4_src_all.tar.gz"], "md5": "1062ae3102262b55efd51cb48fb37d0c", "fn": "BioPlex_1.3.4.tar.gz"}, "adme16cod.db-3.4.0": {"urls": ["https://bioconductor.org/packages/3.17/data/annotation/src/contrib/adme16cod.db_3.4.0.tar.gz", "https://bioarchive.galaxyproject.org/adme16cod.db_3.4.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-adme16cod.db/bioconductor-adme16cod.db_3.4.0_src_all.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-adme16cod.db/bioconductor-adme16cod.db_3.4.0_src_all.tar.gz"], "md5": "3902516a40a503302ef732143b2394b9", "fn": "adme16cod.db_3.4.0.tar.gz"}, "ag.db-3.13.0": {"urls": ["https://bioconductor.org/packages/3.17/data/annotation/src/contrib/ag.db_3.13.0.tar.gz", "https://bioarchive.galaxyproject.org/ag.db_3.13.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-ag.db/bioconductor-ag.db_3.13.0_src_all.tar.gz"], "md5": "925e808d2c9b21a11ed131d483e75ab6", "fn": "ag.db_3.13.0.tar.gz"}, "agcdf-2.18.0": {"urls": ["https://bioconductor.org/packages/3.17/data/annotation/src/contrib/agcdf_2.18.0.tar.gz", "https://bioarchive.galaxyproject.org/agcdf_2.18.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-agcdf/bioconductor-agcdf_2.18.0_src_all.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-agcdf/bioconductor-agcdf_2.18.0_src_all.tar.gz"], "md5": "5dd14bc6a6d2729f5e7b170105c78e48", "fn": "agcdf_2.18.0.tar.gz"}, "agprobe-2.18.0": {"urls": ["https://bioconductor.org/packages/3.17/data/annotation/src/contrib/agprobe_2.18.0.tar.gz", "https://bioarchive.galaxyproject.org/agprobe_2.18.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-agprobe/bioconductor-agprobe_2.18.0_src_all.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-agprobe/bioconductor-agprobe_2.18.0_src_all.tar.gz"], "md5": "08f7527d4c8a30d8b2f86016a53f075a", "fn": "agprobe_2.18.0.tar.gz"}, "ahcytobands-0.99.1": {"urls": ["https://bioconductor.org/packages/3.17/data/annotation/src/contrib/AHCytoBands_0.99.1.tar.gz", "https://bioarchive.galaxyproject.org/AHCytoBands_0.99.1.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-ahcytobands/bioconductor-ahcytobands_0.99.1_src_all.tar.gz"], "md5": "3dd85d02e7ed3fca4c7898b5e395edeb", "fn": "AHCytoBands_0.99.1.tar.gz"}, "ahensdbs-1.1.8": {"urls": ["https://bioconductor.org/packages/3.17/data/annotation/src/contrib/AHEnsDbs_1.1.8.tar.gz", "https://bioarchive.galaxyproject.org/AHEnsDbs_1.1.8.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-ahensdbs/bioconductor-ahensdbs_1.1.8_src_all.tar.gz"], "md5": "f2c8c9338f09f480a46e1155d985d08f", "fn": "AHEnsDbs_1.1.8.tar.gz"}, "ahlrbasedbs-1.5.0": {"urls": ["https://bioconductor.org/packages/3.16/data/annotation/src/contrib/AHLRBaseDbs_1.5.0.tar.gz", "https://bioarchive.galaxyproject.org/AHLRBaseDbs_1.5.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-ahlrbasedbs/bioconductor-ahlrbasedbs_1.5.0_src_all.tar.gz"], "md5": "b1266d2bab652542d6f7289898c3e781", "fn": "AHLRBaseDbs_1.5.0.tar.gz"}, "ahmeshdbs-1.5.0": {"urls": ["https://bioconductor.org/packages/3.16/data/annotation/src/contrib/AHMeSHDbs_1.5.0.tar.gz", "https://bioarchive.galaxyproject.org/AHMeSHDbs_1.5.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-ahmeshdbs/bioconductor-ahmeshdbs_1.5.0_src_all.tar.gz"], "md5": "87c396d15191843ec3cdced73bf504f8", "fn": "AHMeSHDbs_1.5.0.tar.gz"}, "ahpathbankdbs-0.99.5": {"urls": ["https://bioconductor.org/packages/3.17/data/annotation/src/contrib/AHPathbankDbs_0.99.5.tar.gz", "https://bioarchive.galaxyproject.org/AHPathbankDbs_0.99.5.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-ahpathbankdbs/bioconductor-ahpathbankdbs_0.99.5_src_all.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-ahpathbankdbs/bioconductor-ahpathbankdbs_0.99.5_src_all.tar.gz"], "md5": "70339eae8c03c47248b612b365bda4ff", "fn": "AHPathbankDbs_0.99.5.tar.gz"}, "ahpubmeddbs-1.5.0": {"urls": ["https://bioconductor.org/packages/3.16/data/annotation/src/contrib/AHPubMedDbs_1.5.0.tar.gz", "https://bioarchive.galaxyproject.org/AHPubMedDbs_1.5.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-ahpubmeddbs/bioconductor-ahpubmeddbs_1.5.0_src_all.tar.gz"], "md5": "0fa89f6189085931f1245c31ddced2d4", "fn": "AHPubMedDbs_1.5.0.tar.gz"}, "ahwikipathwaysdbs-0.99.4": {"urls": ["https://bioconductor.org/packages/3.17/data/annotation/src/contrib/AHWikipathwaysDbs_0.99.4.tar.gz", "https://bioarchive.galaxyproject.org/AHWikipathwaysDbs_0.99.4.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-ahwikipathwaysdbs/bioconductor-ahwikipathwaysdbs_0.99.4_src_all.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-ahwikipathwaysdbs/bioconductor-ahwikipathwaysdbs_0.99.4_src_all.tar.gz"], "md5": "ffa90f6d6e8832ae6f4b5bf8b151cd46", "fn": "AHWikipathwaysDbs_0.99.4.tar.gz"}, "alternativesplicingevents.hg19-1.1.0": {"urls": ["https://bioconductor.org/packages/3.17/data/annotation/src/contrib/alternativeSplicingEvents.hg19_1.1.0.tar.gz", "https://bioarchive.galaxyproject.org/alternativeSplicingEvents.hg19_1.1.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-alternativesplicingevents.hg19/bioconductor-alternativesplicingevents.hg19_1.1.0_src_all.tar.gz"], "md5": "b1acae776c9e9c5d961cf4884cadc58f", "fn": "alternativeSplicingEvents.hg19_1.1.0.tar.gz"}, "alternativesplicingevents.hg38-1.1.0": {"urls": ["https://bioconductor.org/packages/3.17/data/annotation/src/contrib/alternativeSplicingEvents.hg38_1.1.0.tar.gz", "https://bioarchive.galaxyproject.org/alternativeSplicingEvents.hg38_1.1.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-alternativesplicingevents.hg38/bioconductor-alternativesplicingevents.hg38_1.1.0_src_all.tar.gz"], "md5": "8d49710eebd62fb15a48cab252ff3eca", "fn": "alternativeSplicingEvents.hg38_1.1.0.tar.gz"}, "anopheles.db0-3.16.0": {"urls": ["https://bioconductor.org/packages/3.16/data/annotation/src/contrib/anopheles.db0_3.16.0.tar.gz", "https://bioarchive.galaxyproject.org/anopheles.db0_3.16.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-anopheles.db0/bioconductor-anopheles.db0_3.16.0_src_all.tar.gz"], "md5": "17c685b359943a1ef3b21e78f27dc469", "fn": "anopheles.db0_3.16.0.tar.gz"}, "arabidopsis.db0-3.16.0": {"urls": ["https://bioconductor.org/packages/3.16/data/annotation/src/contrib/arabidopsis.db0_3.16.0.tar.gz", "https://bioarchive.galaxyproject.org/arabidopsis.db0_3.16.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-arabidopsis.db0/bioconductor-arabidopsis.db0_3.16.0_src_all.tar.gz"], "md5": "c72b535bf366b91986fa42ffbb2c6d41", "fn": "arabidopsis.db0_3.16.0.tar.gz"}, "ath1121501.db-3.13.0": {"urls": ["https://bioconductor.org/packages/3.17/data/annotation/src/contrib/ath1121501.db_3.13.0.tar.gz", "https://bioarchive.galaxyproject.org/ath1121501.db_3.13.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-ath1121501.db/bioconductor-ath1121501.db_3.13.0_src_all.tar.gz"], "md5": "c5d937ca9c6bcbb4385fb37a3b14ad15", "fn": 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"7b4ba6a8a59379a3b7f368e6c26fa0a6", "fn": "TumourMethData_1.0.0.tar.gz"}, "tweedeseqcountdata-1.40.0": {"urls": ["https://bioconductor.org/packages/3.18/data/experiment/src/contrib/tweeDEseqCountData_1.40.0.tar.gz", "https://bioarchive.galaxyproject.org/tweeDEseqCountData_1.40.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-tweedeseqcountdata/bioconductor-tweedeseqcountdata_1.40.0_src_all.tar.gz"], "md5": "d63e819cedf93ffbe115ed518bc9feaf", "fn": "tweeDEseqCountData_1.40.0.tar.gz"}, "tximportdata-1.30.0": {"urls": ["https://bioconductor.org/packages/3.18/data/experiment/src/contrib/tximportData_1.30.0.tar.gz", "https://bioarchive.galaxyproject.org/tximportData_1.30.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-tximportdata/bioconductor-tximportdata_1.30.0_src_all.tar.gz"], "md5": "4494d764fc087333e5c04ee7977c85c8", "fn": "tximportData_1.30.0.tar.gz"}, "varianttoolsdata-1.26.0": {"urls": ["https://bioconductor.org/packages/3.18/data/experiment/src/contrib/VariantToolsData_1.26.0.tar.gz", "https://bioarchive.galaxyproject.org/VariantToolsData_1.26.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-varianttoolsdata/bioconductor-varianttoolsdata_1.26.0_src_all.tar.gz"], "md5": "a85757ce237b03b0480f01488a78879b", "fn": "VariantToolsData_1.26.0.tar.gz"}, "vectrapolarisdata-1.6.0": {"urls": ["https://bioconductor.org/packages/3.18/data/experiment/src/contrib/VectraPolarisData_1.6.0.tar.gz", "https://bioarchive.galaxyproject.org/VectraPolarisData_1.6.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-vectrapolarisdata/bioconductor-vectrapolarisdata_1.6.0_src_all.tar.gz"], "md5": "ea2006b85e374e76fbd70ca8b0819072", "fn": "VectraPolarisData_1.6.0.tar.gz"}, "vulcandata-1.24.0": {"urls": ["https://bioconductor.org/packages/3.18/data/experiment/src/contrib/vulcandata_1.24.0.tar.gz", "https://bioarchive.galaxyproject.org/vulcandata_1.24.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-vulcandata/bioconductor-vulcandata_1.24.0_src_all.tar.gz"], "md5": "cd95ea7ac7f2b9edfd46c1ffccb7c3c1", "fn": "vulcandata_1.24.0.tar.gz"}, "weberdivechalcdata-1.4.0": {"urls": ["https://bioconductor.org/packages/3.18/data/experiment/src/contrib/WeberDivechaLCdata_1.4.0.tar.gz", "https://bioarchive.galaxyproject.org/WeberDivechaLCdata_1.4.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-weberdivechalcdata/bioconductor-weberdivechalcdata_1.4.0_src_all.tar.gz"], "md5": "3b75c693f86ed228e2b7816872cfe4b7", "fn": "WeberDivechaLCdata_1.4.0.tar.gz"}, "wes.1kg.wugsc-1.34.0": {"urls": ["https://bioconductor.org/packages/3.18/data/experiment/src/contrib/WES.1KG.WUGSC_1.34.0.tar.gz", "https://bioarchive.galaxyproject.org/WES.1KG.WUGSC_1.34.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-wes.1kg.wugsc/bioconductor-wes.1kg.wugsc_1.34.0_src_all.tar.gz"], "md5": "a0a3d230e27342090638ec4868756e5a", "fn": "WES.1KG.WUGSC_1.34.0.tar.gz"}, "wgsmapp-1.14.0": {"urls": ["https://bioconductor.org/packages/3.18/data/experiment/src/contrib/WGSmapp_1.14.0.tar.gz", "https://bioarchive.galaxyproject.org/WGSmapp_1.14.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-wgsmapp/bioconductor-wgsmapp_1.14.0_src_all.tar.gz"], "md5": "dfc3f5a82d532551e2d6c21b11c99566", "fn": "WGSmapp_1.14.0.tar.gz"}, "xcoredata-1.6.0": {"urls": ["https://bioconductor.org/packages/3.18/data/experiment/src/contrib/xcoredata_1.6.0.tar.gz", "https://bioarchive.galaxyproject.org/xcoredata_1.6.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-xcoredata/bioconductor-xcoredata_1.6.0_src_all.tar.gz"], "md5": "214626bfcbb5d66445324f6e367142c7", "fn": "xcoredata_1.6.0.tar.gz"}, "xhybcasneuf-1.40.0": {"urls": ["https://bioconductor.org/packages/3.18/data/experiment/src/contrib/XhybCasneuf_1.40.0.tar.gz", "https://bioarchive.galaxyproject.org/XhybCasneuf_1.40.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-xhybcasneuf/bioconductor-xhybcasneuf_1.40.0_src_all.tar.gz"], "md5": "f3e6306b5c05fb026e36e4c60656e25a", "fn": "XhybCasneuf_1.40.0.tar.gz"}, "yeastcc-1.42.0": {"urls": ["https://bioconductor.org/packages/3.18/data/experiment/src/contrib/yeastCC_1.42.0.tar.gz", "https://bioarchive.galaxyproject.org/yeastCC_1.42.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-yeastcc/bioconductor-yeastcc_1.42.0_src_all.tar.gz"], "md5": "847d9bba73cb25f458f608c2cd6bf0e8", "fn": "yeastCC_1.42.0.tar.gz"}, "yeastexpdata-0.48.0": {"urls": ["https://bioconductor.org/packages/3.18/data/experiment/src/contrib/yeastExpData_0.48.0.tar.gz", "https://bioarchive.galaxyproject.org/yeastExpData_0.48.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-yeastexpdata/bioconductor-yeastexpdata_0.48.0_src_all.tar.gz"], "md5": "7cd63808a957defe831bf3e9d3ef4789", "fn": "yeastExpData_0.48.0.tar.gz"}, "yeastgsdata-0.40.0": {"urls": ["https://bioconductor.org/packages/3.18/data/experiment/src/contrib/yeastGSData_0.40.0.tar.gz", "https://bioarchive.galaxyproject.org/yeastGSData_0.40.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-yeastgsdata/bioconductor-yeastgsdata_0.40.0_src_all.tar.gz"], "md5": "bc455a9ecd3eb2652f887026841b3c69", "fn": "yeastGSData_0.40.0.tar.gz"}, "yeastnagalakshmi-1.38.0": {"urls": ["https://bioconductor.org/packages/3.18/data/experiment/src/contrib/yeastNagalakshmi_1.38.0.tar.gz", "https://bioarchive.galaxyproject.org/yeastNagalakshmi_1.38.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-yeastnagalakshmi/bioconductor-yeastnagalakshmi_1.38.0_src_all.tar.gz"], "md5": "ea5068bf2b4053452f416c56ab32736a", "fn": "yeastNagalakshmi_1.38.0.tar.gz"}, "yeastrnaseq-0.40.0": {"urls": ["https://bioconductor.org/packages/3.18/data/experiment/src/contrib/yeastRNASeq_0.40.0.tar.gz", "https://bioarchive.galaxyproject.org/yeastRNASeq_0.40.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-yeastrnaseq/bioconductor-yeastrnaseq_0.40.0_src_all.tar.gz"], "md5": "2344deacf993b96e1709ad96b710471f", "fn": "yeastRNASeq_0.40.0.tar.gz"}, "zebrafishrnaseq-1.22.0": {"urls": ["https://bioconductor.org/packages/3.18/data/experiment/src/contrib/zebrafishRNASeq_1.22.0.tar.gz", "https://bioarchive.galaxyproject.org/zebrafishRNASeq_1.22.0.tar.gz", "https://depot.galaxyproject.org/software/bioconductor-zebrafishrnaseq/bioconductor-zebrafishrnaseq_1.22.0_src_all.tar.gz"], "md5": "c1fcbadec1b25e4b28483c015f7ab35c", "fn": "zebrafishRNASeq_1.22.0.tar.gz"}}
\ No newline at end of file
diff --git a/recipes/bioconductor-data-packages/meta.yaml b/recipes/bioconductor-data-packages/meta.yaml
index e1e4b22d3f8b8..9a5e1a2092398 100644
--- a/recipes/bioconductor-data-packages/meta.yaml
+++ b/recipes/bioconductor-data-packages/meta.yaml
@@ -1,10 +1,12 @@
 package:
   name: 'bioconductor-data-packages'
-  version: '20230718'
+  version: '20231203'
 source:
 build:
-  number: 1
+  number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage("bioconductor-data-packages", max_pin=None) }}
 requirements:
   run:
     - r-base
diff --git a/recipes/bioconductor-davidtiling/meta.yaml b/recipes/bioconductor-davidtiling/meta.yaml
index c60799926ebfa..35f0720944fec 100644
--- a/recipes/bioconductor-davidtiling/meta.yaml
+++ b/recipes/bioconductor-davidtiling/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "davidTiling" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: aa55aaed3cb0a0e29db8c538c636b447
+  md5: dace46d6f640014aff544e0faf355b5e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-davidtiling", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-tilingarray >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-tilingarray >=1.80.0,<1.81.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-tilingarray >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-tilingarray >=1.80.0,<1.81.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-davidtiling/post-link.sh b/recipes/bioconductor-davidtiling/post-link.sh
index 2c0cdbe1d7e3e..ebb07a26801fe 100644
--- a/recipes/bioconductor-davidtiling/post-link.sh
+++ b/recipes/bioconductor-davidtiling/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "davidtiling-1.40.0"
+installBiocDataPackage.sh "davidtiling-1.42.0"
diff --git a/recipes/bioconductor-dcanr/meta.yaml b/recipes/bioconductor-dcanr/meta.yaml
index d01daf020a69d..839e3b308764b 100644
--- a/recipes/bioconductor-dcanr/meta.yaml
+++ b/recipes/bioconductor-dcanr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "dcanr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d2c15eccd56d9265e4b6d81fa4ab3653
+  md5: 1a30832879c85ae9430a463d581ba978
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dcanr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: EBcoexpress, testthat, EBarrays, GeneNet, mclust, minqa, SummarizedExperiment, Biobase, knitr, rmarkdown, BiocStyle, edgeR
 requirements:
diff --git a/recipes/bioconductor-dcats/build.sh b/recipes/bioconductor-dcats/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-dcats/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-dcats/meta.yaml b/recipes/bioconductor-dcats/meta.yaml
new file mode 100644
index 0000000000000..121d93a21050b
--- /dev/null
+++ b/recipes/bioconductor-dcats/meta.yaml
@@ -0,0 +1,47 @@
+{% set version = "1.0.0" %}
+{% set name = "DCATS" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 8a6002426027bd88d05a2b8759d5a12e
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dcats", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: testthat (>= 3.0.0), knitr, Seurat, SeuratObject, tidyverse, rmarkdown, BiocStyle
+requirements:
+  host:
+    - r-aod
+    - r-base
+    - r-e1071
+    - r-matrixstats
+    - r-mcmcpack
+    - r-robustbase
+  run:
+    - r-aod
+    - r-base
+    - r-e1071
+    - r-matrixstats
+    - r-mcmcpack
+    - r-robustbase
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'MIT + file LICENSE'
+  summary: 'Differential Composition Analysis Transformed by a Similarity matrix'
+  description: 'Methods to detect the differential composition abundances between conditions in singel-cell RNA-seq experiments, with or without replicates. It aims to correct bias introduced by missclaisification and enable controlling of confounding covariates. To avoid the influence of proportion change from big cell types, DCATS can use either total cell number or specific reference group as normalization term.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-dce/meta.yaml b/recipes/bioconductor-dce/meta.yaml
index d2b9af554e2c9..82addc1e3b3ab 100644
--- a/recipes/bioconductor-dce/meta.yaml
+++ b/recipes/bioconductor-dce/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.7.0" %}
+{% set version = "1.10.0" %}
 {% set name = "dce" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 43a65a2d1518138f7f6a6984e025fcde
+  md5: dbebdd246ea193f92c1a466a84617876
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dce", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat (>= 2.1.0), BiocStyle, formatR, cowplot, ggplotify, dagitty, lmtest, sandwich, devtools, curatedTCGAData, TCGAutils, SummarizedExperiment, RcppParallel, docopt, CARNIVAL
 requirements:
   host:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-epinem >=1.24.0,<1.25.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-graphite >=1.46.0,<1.47.0'
-    - 'bioconductor-mnem >=1.16.0,<1.17.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-epinem >=1.26.0,<1.27.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-graphite >=1.48.0,<1.49.0'
+    - 'bioconductor-mnem >=1.18.0,<1.19.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-assertthat
     - r-base
     - r-dplyr
@@ -53,13 +54,13 @@ requirements:
     - r-tidygraph
     - r-tidyverse
   run:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-epinem >=1.24.0,<1.25.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-graphite >=1.46.0,<1.47.0'
-    - 'bioconductor-mnem >=1.16.0,<1.17.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-epinem >=1.26.0,<1.27.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-graphite >=1.48.0,<1.49.0'
+    - 'bioconductor-mnem >=1.18.0,<1.19.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-assertthat
     - r-base
     - r-dplyr
diff --git a/recipes/bioconductor-dcgsa/meta.yaml b/recipes/bioconductor-dcgsa/meta.yaml
index 77f6314b8fb7d..81d2701989b49 100644
--- a/recipes/bioconductor-dcgsa/meta.yaml
+++ b/recipes/bioconductor-dcgsa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "dcGSA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4c250b2149d2ecfe5fa7b22d305b6753
+  md5: f824cffdf3d7c4f41b44d2cc46b69998
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dcgsa", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-matrix
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-matrix
 test:
diff --git a/recipes/bioconductor-ddct/meta.yaml b/recipes/bioconductor-ddct/meta.yaml
index 2d4d457b53232..88e86641ae0b3 100644
--- a/recipes/bioconductor-ddct/meta.yaml
+++ b/recipes/bioconductor-ddct/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.56.0" %}
+{% set version = "1.58.0" %}
 {% set name = "ddCt" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0e9800430fe0d1654a624db09b883e2c
+  md5: 560588380b356d55a4e11811ae9100e6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ddct", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 3.0.0), RUnit
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-lattice
     - 'r-rcolorbrewer >=0.1-3'
     - r-xtable
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-lattice
     - 'r-rcolorbrewer >=0.1-3'
diff --git a/recipes/bioconductor-ddpcrclust/meta.yaml b/recipes/bioconductor-ddpcrclust/meta.yaml
index f01a2b33e6d6e..342aec460ad83 100644
--- a/recipes/bioconductor-ddpcrclust/meta.yaml
+++ b/recipes/bioconductor-ddpcrclust/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "ddPCRclust" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 04448bd253195b441eabc6f2f17b208e
+  md5: 63c29b24786957fcb604e73a61066e47
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ddpcrclust", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle
 requirements:
   host:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowdensity >=1.34.0,<1.35.0'
-    - 'bioconductor-flowpeaks >=1.46.0,<1.47.0'
-    - 'bioconductor-samspectral >=1.54.0,<1.55.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowdensity >=1.36.0,<1.37.0'
+    - 'bioconductor-flowpeaks >=1.48.0,<1.49.0'
+    - 'bioconductor-samspectral >=1.56.0,<1.57.0'
     - r-base
     - r-clue
     - r-ggplot2
@@ -32,10 +33,10 @@ requirements:
     - r-plotrix
     - r-r.utils
   run:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowdensity >=1.34.0,<1.35.0'
-    - 'bioconductor-flowpeaks >=1.46.0,<1.47.0'
-    - 'bioconductor-samspectral >=1.54.0,<1.55.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowdensity >=1.36.0,<1.37.0'
+    - 'bioconductor-flowpeaks >=1.48.0,<1.49.0'
+    - 'bioconductor-samspectral >=1.56.0,<1.57.0'
     - r-base
     - r-clue
     - r-ggplot2
diff --git a/recipes/bioconductor-dearseq/meta.yaml b/recipes/bioconductor-dearseq/meta.yaml
index b67e37a6861c6..d73ece4475cbb 100644
--- a/recipes/bioconductor-dearseq/meta.yaml
+++ b/recipes/bioconductor-dearseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.1" %}
+{% set version = "1.14.0" %}
 {% set name = "dearseq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 544bd47d884e994f11d6b49f331a4915
+  md5: 40f5669b310e7d2142836e3b1592bdd6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dearseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biobase, BiocManager, BiocSet, edgeR, DESeq2, GEOquery, GSA, knitr, limma, readxl, rmarkdown, S4Vectors, SummarizedExperiment, testthat, covr
 requirements:
diff --git a/recipes/bioconductor-debcam/meta.yaml b/recipes/bioconductor-debcam/meta.yaml
index 14ea154da7e6e..0af1f12365332 100644
--- a/recipes/bioconductor-debcam/meta.yaml
+++ b/recipes/bioconductor-debcam/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "debCAM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 777e6f50d5b0121ba5cc208d1697512b
+  md5: 87d118edcaf90e70fd6aafc865ac5c6a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-debcam", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, testthat, GEOquery, rgl
 # SystemRequirements: Java (>= 1.8)
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-apcluster
     - r-base
     - r-corpcor
@@ -36,9 +37,9 @@ requirements:
     - r-rjava
     - openjdk
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-apcluster
     - r-base
     - r-corpcor
diff --git a/recipes/bioconductor-debrowser/meta.yaml b/recipes/bioconductor-debrowser/meta.yaml
index 6c96afb5dbe75..ba6472bfcdadd 100644
--- a/recipes/bioconductor-debrowser/meta.yaml
+++ b/recipes/bioconductor-debrowser/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.2" %}
+{% set version = "1.30.0" %}
 {% set name = "debrowser" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 6deaca84c5d4d7f700e23ab0887b4567
+  md5: dc51add531d95b1e7a924062aa773018
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-debrowser", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, rmarkdown, knitr
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-apeglm >=1.22.0,<1.23.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-enrichplot >=1.20.0,<1.21.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-harman >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-pathview >=1.40.0,<1.41.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-apeglm >=1.24.0,<1.25.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-enrichplot >=1.22.0,<1.23.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-harman >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-pathview >=1.42.0,<1.43.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-ashr
     - r-base
     - r-colourpicker
@@ -58,24 +59,24 @@ requirements:
     - r-shinyjs
     - r-stringi
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-apeglm >=1.22.0,<1.23.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-enrichplot >=1.20.0,<1.21.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-harman >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-pathview >=1.40.0,<1.41.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-apeglm >=1.24.0,<1.25.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-enrichplot >=1.22.0,<1.23.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-harman >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-pathview >=1.42.0,<1.43.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-ashr
     - r-base
     - r-colourpicker
diff --git a/recipes/bioconductor-decipher/meta.yaml b/recipes/bioconductor-decipher/meta.yaml
index 4ce9ee8807ab5..32250e45f3280 100644
--- a/recipes/bioconductor-decipher/meta.yaml
+++ b/recipes/bioconductor-decipher/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.28.0" %}
+{% set version = "2.30.0" %}
 {% set name = "DECIPHER" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9396595ebcedf5d570edb11acc6198e0
+  md5: 0a32c782d61a604dc3594c684daa8c75
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-decipher", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-dbi
     - 'r-rsqlite >=1.1'
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-dbi
     - 'r-rsqlite >=1.1'
@@ -44,11 +45,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-3
+  license: GPL-3.0-only
   summary: 'Tools for curating, analyzing, and manipulating biological sequences'
   description: 'A toolset for deciphering and managing biological sequences.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:DECIPHER
   parent_recipe:
diff --git a/recipes/bioconductor-decomptumor2sig/meta.yaml b/recipes/bioconductor-decomptumor2sig/meta.yaml
index fc0d87e519d65..a220fbdc707c4 100644
--- a/recipes/bioconductor-decomptumor2sig/meta.yaml
+++ b/recipes/bioconductor-decomptumor2sig/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.16.0" %}
+{% set version = "2.18.0" %}
 {% set name = "decompTumor2Sig" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6e5ef097fd6a7f21bc4d0aea7cb72a00
+  md5: efd7bdadb25752241823124b560e9214
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-decomptumor2sig", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-data.table
     - r-ggplot2
@@ -41,16 +42,16 @@ requirements:
     - 'r-quadprog >=1.5-5'
     - r-readxl
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-data.table
     - r-ggplot2
diff --git a/recipes/bioconductor-deconrnaseq/meta.yaml b/recipes/bioconductor-deconrnaseq/meta.yaml
index dc799c1ab8852..a32a24d5aab35 100644
--- a/recipes/bioconductor-deconrnaseq/meta.yaml
+++ b/recipes/bioconductor-deconrnaseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "DeconRNASeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fe6899279ea73a5b02aee2addc34f38d
+  md5: d38af67b8408b66b85fbb4061442b953
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-deconrnaseq", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
     - r-base
     - r-ggplot2
     - r-limsolve
   run:
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
     - r-base
     - r-ggplot2
     - r-limsolve
diff --git a/recipes/bioconductor-decontam/meta.yaml b/recipes/bioconductor-decontam/meta.yaml
index c451e14479b93..92c3bba5ab045 100644
--- a/recipes/bioconductor-decontam/meta.yaml
+++ b/recipes/bioconductor-decontam/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "decontam" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 549a965f3aa9c02b7c4533c81acd2252
+  md5: 0e6be1cbff9c4396692e39aadc0a5b9e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-decontam", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, phyloseq
 requirements:
diff --git a/recipes/bioconductor-decontx/build.sh b/recipes/bioconductor-decontx/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-decontx/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-decontx/meta.yaml b/recipes/bioconductor-decontx/meta.yaml
new file mode 100644
index 0000000000000..4a08a6867b10a
--- /dev/null
+++ b/recipes/bioconductor-decontx/meta.yaml
@@ -0,0 +1,88 @@
+{% set version = "1.0.0" %}
+{% set name = "decontX" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 1e2f4af9204397b8104543dd954bb390
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-decontx", max_pin="x.x") }}'
+# Suggests: BiocStyle, dplyr, knitr, rmarkdown, scran, SingleCellMultiModal, TENxPBMCData, testthat (>= 3.0.0)
+# SystemRequirements: GNU make
+requirements:
+  host:
+    - 'bioconductor-celda >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - 'r-bh >=1.66.0'
+    - r-dbscan
+    - r-ggplot2
+    - 'r-matrix >=1.5.3'
+    - r-mcmcprecision
+    - r-patchwork
+    - r-plyr
+    - 'r-rcpp >=0.12.0'
+    - 'r-rcppeigen >=0.3.3.3.0'
+    - 'r-rcppparallel >=5.0.1'
+    - r-reshape2
+    - 'r-rstan >=2.18.1'
+    - 'r-rstantools >=2.2.0'
+    - r-seurat
+    - 'r-stanheaders >=2.18.0'
+    - r-withr
+    - libblas
+    - liblapack
+  run:
+    - 'bioconductor-celda >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - 'r-bh >=1.66.0'
+    - r-dbscan
+    - r-ggplot2
+    - 'r-matrix >=1.5.3'
+    - r-mcmcprecision
+    - r-patchwork
+    - r-plyr
+    - 'r-rcpp >=0.12.0'
+    - 'r-rcppeigen >=0.3.3.3.0'
+    - 'r-rcppparallel >=5.0.1'
+    - r-reshape2
+    - 'r-rstan >=2.18.1'
+    - 'r-rstantools >=2.2.0'
+    - r-seurat
+    - 'r-stanheaders >=2.18.0'
+    - r-withr
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - automake
+    - make
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'MIT + file LICENSE'
+  summary: 'Decontamination of single cell genomics data'
+  description: 'This package contains implementation of DecontX (Yang et al. 2020), a decontamination algorithm for single-cell RNA-seq, and DecontPro (Yin et al. 2023), a decontamination algorithm for single cell protein expression data. DecontX is a novel Bayesian method to computationally estimate and remove RNA contamination in individual cells without empty droplet information. DecontPro is a Bayesian method that estimates the level of contamination from ambient and background sources in CITE-seq ADT dataset and decontaminate the dataset.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-deconvr/meta.yaml b/recipes/bioconductor-deconvr/meta.yaml
index ddfd91252440c..ea453fe8601db 100644
--- a/recipes/bioconductor-deconvr/meta.yaml
+++ b/recipes/bioconductor-deconvr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "deconvR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 378b68def947127eaecc6e0f16231a81
+  md5: 77963b41f8655665f3aac5e2cb1d529c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-deconvr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 3.0.0), roxygen2 (>= 7.1.2), doParallel (>= 1.0.16), parallel, knitr (>= 1.34), BiocStyle (>= 2.20.2), reshape2 (>= 1.4.4), ggplot2 (>= 3.3.5), rmarkdown, devtools (>= 2.4.2), sessioninfo (>= 1.1.1), covr, granulator, RefManageR
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-methylkit >=1.26.0,<1.27.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-methylkit >=1.28.0,<1.29.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-assertthat
     - r-base
     - 'r-data.table >=1.14.0'
@@ -41,12 +42,12 @@ requirements:
     - 'r-rsq >=2.2'
     - 'r-tidyr >=1.1.3'
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-methylkit >=1.26.0,<1.27.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-methylkit >=1.28.0,<1.29.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-assertthat
     - r-base
     - 'r-data.table >=1.14.0'
diff --git a/recipes/bioconductor-decoupler/meta.yaml b/recipes/bioconductor-decoupler/meta.yaml
index ff57fa682a15e..5694c36e329e4 100644
--- a/recipes/bioconductor-decoupler/meta.yaml
+++ b/recipes/bioconductor-decoupler/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.6.0" %}
+{% set version = "2.8.0" %}
 {% set name = "decoupleR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 46b97475fd42e3633fb5c40d26c88d4e
+  md5: de2a391693476223ec54521aa77ba121
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-decoupler", max_pin="x.x") }}'
   noarch: generic
 # Suggests: glmnet (>= 4.1.0), GSVA, viper, fgsea (>= 1.15.4), AUCell, SummarizedExperiment, rpart, ranger, BiocStyle, covr, knitr, pkgdown, RefManageR, rmarkdown, roxygen2, sessioninfo, pheatmap, testthat, OmnipathR, Seurat, ggplot2, ggrepel, patchwork
 requirements:
diff --git a/recipes/bioconductor-deepbluer/build_failure.linux-64.yaml b/recipes/bioconductor-deepbluer/build_failure.linux-64.yaml
index 32a64afe45536..4cd5b4a0d4f6b 100644
--- a/recipes/bioconductor-deepbluer/build_failure.linux-64.yaml
+++ b/recipes/bioconductor-deepbluer/build_failure.linux-64.yaml
@@ -1,72 +1,72 @@
-recipe_sha: b09c118bdb9ad88319ef992ea639cfc1161541201e802900f905d1027c7fcdcc  # The commit at which this recipe failed to build.
+recipe_sha: 298dc02b6321425f565f394b84e67a916cb488fbfb52ae216e284b9f02ba71ce  # The commit at which this recipe failed to build.
 skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
 log: |2-
-      r-withr:                           2.5.0-r43hc72bb7e_2        conda-forge
-      r-xfun:                            0.39-r43ha503ecb_1         conda-forge
-      r-xml:                             3.99_0.14-r43hc38eee6_2    conda-forge
-      r-yaml:                            2.3.7-r43h57805ef_1        conda-forge
-      readline:                          8.2-h8228510_1             conda-forge
-      sed:                               4.8-he412f7d_0             conda-forge
-      setuptools:                        68.0.0-pyhd8ed1ab_0        conda-forge
       sysroot_linux-64:                  2.12-he073ed8_16           conda-forge
-      tk:                                8.6.12-h27826a3_0          conda-forge
-      tktable:                           2.10-hb7b940f_3            conda-forge
+      tk:                                8.6.13-noxft_h4845f30_101  conda-forge
+      tktable:                           2.10-h0c5db8f_5            conda-forge
       toml:                              0.10.2-pyhd8ed1ab_0        conda-forge
-      tomlkit:                           0.11.8-pyha770c72_0        conda-forge
-      tzdata:                            2023c-h71feb2d_0           conda-forge
-      wheel:                             0.40.0-pyhd8ed1ab_1        conda-forge
+      tomlkit:                           0.12.3-pyha770c72_0        conda-forge
+      tzdata:                            2023d-h0c530f3_0           conda-forge
+      wheel:                             0.42.0-pyhd8ed1ab_0        conda-forge
       xmltodict:                         0.13.0-pyhd8ed1ab_0        conda-forge
       xorg-kbproto:                      1.0.7-h7f98852_1002        conda-forge
-      xorg-libice:                       1.0.10-h7f98852_0          conda-forge
-      xorg-libsm:                        1.2.3-hd9c2040_1000        conda-forge
-      xorg-libx11:                       1.8.6-h8ee46fc_0           conda-forge
+      xorg-libice:                       1.1.1-hd590300_0           conda-forge
+      xorg-libsm:                        1.2.4-h7391055_0           conda-forge
+      xorg-libx11:                       1.8.7-h8ee46fc_0           conda-forge
       xorg-libxau:                       1.0.11-hd590300_0          conda-forge
       xorg-libxdmcp:                     1.1.3-h7f98852_0           conda-forge
       xorg-libxext:                      1.3.4-h0b41bf4_2           conda-forge
       xorg-libxrender:                   0.9.11-hd590300_0          conda-forge
-      xorg-libxt:                        1.3.0-hd590300_0           conda-forge
+      xorg-libxt:                        1.3.0-hd590300_1           conda-forge
       xorg-renderproto:                  0.11.1-h7f98852_1002       conda-forge
       xorg-xextproto:                    7.3.0-h0b41bf4_1003        conda-forge
       xorg-xproto:                       7.0.31-h7f98852_1007       conda-forge
       xz:                                5.2.6-h166bdaf_0           conda-forge
       yaml:                              0.2.5-h7f98852_2           conda-forge
-      yq:                                3.2.2-pyhd8ed1ab_0         conda-forge
+      yq:                                3.2.3-pyhd8ed1ab_0         conda-forge
       zlib:                              1.2.13-hd590300_5          conda-forge
-      zstd:                              1.5.2-hfc55251_7           conda-forge
+      zstd:                              1.5.5-hfc55251_0           conda-forge
 
   Preparing transaction: ...working... done
   Verifying transaction: ...working... done
-  Executing transaction: ...working... done
+  Executing transaction: ...working...
+  To install TinyTeX with tinytex::install_tinytex() the system must have a functional Perl
+  installation with a File::Find module. Most end-user systems will already satisfy this
+  requirement; however, some minimal contexts (e.g., containers) may not. Perl is available
+  via Conda Forge as the package perl. See https://github.com/rstudio/tinytex/issues/419
+
+
+  done
   [34mReloading output folder: [0m[34m/opt/conda/[0m[34mconda-bld[0m
   [?25l[2K[0G[] 0.0s
-  [2K[1A[2K[0Gopt/conda/conda-bld/linux-64                       129.0 B @ 533.1kB/s  0.0s
-  opt/conda/conda-bld/noarch                         127.0 B @ 756.0kB/s  0.0s
+  [2K[1A[2K[0Gopt/conda/conda-bld/linux-64                       129.0 B @   1.8MB/s  0.0s
+  opt/conda/conda-bld/noarch                         127.0 B @   2.4MB/s  0.0s
   [?25h[34mReloading output folder: [0m[34m/opt/conda/[0m[34mconda-bld[0m
   [?25l[2K[0G[] 0.0s
-  [2K[1A[2K[0Gopt/conda/conda-bld/linux-64                       129.0 B @   1.3MB/s  0.0s
-  opt/conda/conda-bld/noarch                         127.0 B @   4.1MB/s  0.0s
+  [2K[1A[2K[0Gopt/conda/conda-bld/linux-64                       129.0 B @   2.0MB/s  0.0s
+  opt/conda/conda-bld/noarch                         127.0 B @   2.4MB/s  0.0s
   [?25h
   ## Package Plan ##
 
-    environment location: /opt/conda/conda-bld/bioconductor-deepbluer_1689835533309/_build_env
+    environment location: /opt/conda/conda-bld/bioconductor-deepbluer_1703295180448/_build_env
 
 
   Source cache directory is: /opt/conda/conda-bld/src_cache
   INFO:conda_build.source:Source cache directory is: /opt/conda/conda-bld/src_cache
-  Downloading source to cache: DeepBlueR_1.26.0_6b686d18b4.tar.gz
-  INFO:conda_build.source:Downloading source to cache: DeepBlueR_1.26.0_6b686d18b4.tar.gz
-  Downloading https://bioconductor.org/packages/3.17/bioc/src/contrib/DeepBlueR_1.26.0.tar.gz
-  INFO:conda_build.source:Downloading https://bioconductor.org/packages/3.17/bioc/src/contrib/DeepBlueR_1.26.0.tar.gz
+  Downloading source to cache: DeepBlueR_1.27.0_2217f4325c.tar.gz
+  INFO:conda_build.source:Downloading source to cache: DeepBlueR_1.27.0_2217f4325c.tar.gz
+  Downloading https://bioconductor.org/packages/3.18/bioc/src/contrib/DeepBlueR_1.27.0.tar.gz
+  INFO:conda_build.source:Downloading https://bioconductor.org/packages/3.18/bioc/src/contrib/DeepBlueR_1.27.0.tar.gz
   Success
   INFO:conda_build.source:Success
   Extracting download
-  source tree in: /opt/conda/conda-bld/bioconductor-deepbluer_1689835533309/work
-  export PREFIX=/opt/conda/conda-bld/bioconductor-deepbluer_1689835533309/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_
-  export BUILD_PREFIX=/opt/conda/conda-bld/bioconductor-deepbluer_1689835533309/_build_env
-  export SRC_DIR=/opt/conda/conda-bld/bioconductor-deepbluer_1689835533309/work
+  source tree in: /opt/conda/conda-bld/bioconductor-deepbluer_1703295180448/work
+  export PREFIX=/opt/conda/conda-bld/bioconductor-deepbluer_1703295180448/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_
+  export BUILD_PREFIX=/opt/conda/conda-bld/bioconductor-deepbluer_1703295180448/_build_env
+  export SRC_DIR=/opt/conda/conda-bld/bioconductor-deepbluer_1703295180448/work
   During startup - Warning message:
   Setting LC_TIME failed, using "C"
-  * installing to library /opt/conda/conda-bld/bioconductor-deepbluer_1689835533309/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_/lib/R/library
+  * installing to library /opt/conda/conda-bld/bioconductor-deepbluer_1703295180448/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_/lib/R/library
   * installing *source* package DeepBlueR ...
   ** using staged installation
   ** R
@@ -79,10 +79,10 @@ log: |2-
    "503"
   Error in xml.rpc(deepblue_options("url"), "list_column_types", user_key) :
     Problems
+  ERROR: lazy loading failed for package DeepBlueR
   Error: unable to load R code in package DeepBlueR
   Execution halted
-  ERROR: lazy loading failed for package DeepBlueR
-  * removing /opt/conda/conda-bld/bioconductor-deepbluer_1689835533309/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_/lib/R/library/DeepBlueR
+  * removing /opt/conda/conda-bld/bioconductor-deepbluer_1703295180448/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_/lib/R/library/DeepBlueR
   Traceback (most recent call last):
     File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
       sys.exit(main())
@@ -100,5 +100,5 @@ log: |2-
       return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
     File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
       raise subprocess.CalledProcessError(proc.returncode, _args)
-  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/bioconductor-deepbluer_1689835533309/work/conda_build.sh']' returned non-zero exit status 1.
+  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/bioconductor-deepbluer_1703295180448/work/conda_build.sh']' returned non-zero exit status 1.
 # Last 100 lines of the build log.
diff --git a/recipes/bioconductor-deepbluer/meta.yaml b/recipes/bioconductor-deepbluer/meta.yaml
index 973fe509bbb9a..05c2f44656ae9 100644
--- a/recipes/bioconductor-deepbluer/meta.yaml
+++ b/recipes/bioconductor-deepbluer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.27.0" %}
 {% set name = "DeepBlueR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6b686d18b4c2c51cad4976f4187303fa
+  md5: 2217f4325cc72c3e22c330fa3a8dd25b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-deepbluer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, LOLA, Gviz, gplots, ggplot2, tidyr, RColorBrewer, matrixStats
 requirements:
   host:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-data.table
     - r-diffr
@@ -38,9 +39,9 @@ requirements:
     - r-withr
     - r-xml
   run:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-data.table
     - r-diffr
diff --git a/recipes/bioconductor-deeppincs/meta.yaml b/recipes/bioconductor-deeppincs/meta.yaml
index 9551fe7cc35c7..9e15f3e125853 100644
--- a/recipes/bioconductor-deeppincs/meta.yaml
+++ b/recipes/bioconductor-deeppincs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "DeepPINCS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8b2ad842adfd8cdc86a4e7fb8e1dad8d
+  md5: cc5fbdd874a89f88ffed9c215f1e3d74
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-deeppincs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, rmarkdown
 requirements:
   host:
-    - 'bioconductor-ttgsea >=1.8.0,<1.9.0'
+    - 'bioconductor-ttgsea >=1.10.0,<1.11.0'
     - r-base
     - r-catencoders
     - r-keras
@@ -35,7 +36,7 @@ requirements:
     - r-tokenizers
     - r-webchem
   run:
-    - 'bioconductor-ttgsea >=1.8.0,<1.9.0'
+    - 'bioconductor-ttgsea >=1.10.0,<1.11.0'
     - r-base
     - r-catencoders
     - r-keras
diff --git a/recipes/bioconductor-deepsnv/meta.yaml b/recipes/bioconductor-deepsnv/meta.yaml
index e24a3b3c16087..66edfae750ac9 100644
--- a/recipes/bioconductor-deepsnv/meta.yaml
+++ b/recipes/bioconductor-deepsnv/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "deepSNV" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c1b8f9884aafbf5492ce90f19486c2ec
+  md5: 4df42adbe4997ad401a7d2505ee2b227
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-deepsnv", max_pin="x.x") }}'
 # Suggests: RColorBrewer, knitr, rmarkdown
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-vgam
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-vgam
   build:
diff --git a/recipes/bioconductor-deformats/meta.yaml b/recipes/bioconductor-deformats/meta.yaml
index 58f77e127633a..e9aaba108780e 100644
--- a/recipes/bioconductor-deformats/meta.yaml
+++ b/recipes/bioconductor-deformats/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "DEFormats" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 61f1496fd145226998b44613f7b0e4b2
+  md5: d4fd53366cc3ead5959b9af782ff6790
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-deformats", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle (>= 1.8.0), knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-checkmate
     - r-data.table
   run:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-checkmate
     - r-data.table
diff --git a/recipes/bioconductor-degnorm/meta.yaml b/recipes/bioconductor-degnorm/meta.yaml
index 115a4a3d466b8..a0f2b8bb9bca8 100644
--- a/recipes/bioconductor-degnorm/meta.yaml
+++ b/recipes/bioconductor-degnorm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.1" %}
+{% set version = "1.12.0" %}
 {% set name = "DegNorm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1de83a750bfb953d4984c3fed01730c2
+  md5: 45dbc8183e1e18f3027b7880d3b5ef5a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-degnorm", max_pin="x.x") }}'
 # Suggests: knitr,rmarkdown,formatR
 requirements:
   host:
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-doparallel
@@ -40,12 +41,12 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-doparallel
diff --git a/recipes/bioconductor-degraph/meta.yaml b/recipes/bioconductor-degraph/meta.yaml
index bb3c122bcd32c..d8a23d376a3ec 100644
--- a/recipes/bioconductor-degraph/meta.yaml
+++ b/recipes/bioconductor-degraph/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.52.0" %}
+{% set version = "1.54.0" %}
 {% set name = "DEGraph" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 73c561cbb1e5f175b84a1f0837c002e8
+  md5: c61fb687376b321b9a52dfd15375e0b1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-degraph", max_pin="x.x") }}'
   noarch: generic
 # Suggests: corpcor, fields, graph, KEGGgraph, lattice, marray, RBGL, rrcov, Rgraphviz, NCIgraph
 requirements:
   host:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-kegggraph >=1.60.0,<1.61.0'
-    - 'bioconductor-ncigraph >=1.48.0,<1.49.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-kegggraph >=1.62.0,<1.63.0'
+    - 'bioconductor-ncigraph >=1.50.0,<1.51.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-lattice
     - r-mvtnorm
@@ -33,11 +34,11 @@ requirements:
     - r-r.utils
     - r-rrcov
   run:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-kegggraph >=1.60.0,<1.61.0'
-    - 'bioconductor-ncigraph >=1.48.0,<1.49.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-kegggraph >=1.62.0,<1.63.0'
+    - 'bioconductor-ncigraph >=1.50.0,<1.51.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-lattice
     - r-mvtnorm
diff --git a/recipes/bioconductor-degreport/meta.yaml b/recipes/bioconductor-degreport/meta.yaml
index 104ec171f847c..73f13f7830437 100644
--- a/recipes/bioconductor-degreport/meta.yaml
+++ b/recipes/bioconductor-degreport/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.4" %}
 {% set name = "DEGreport" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1d7a33c4f6e46476e1130b27b0a34dc2
+  md5: d7c43c419f87827c0a116e3ae905ead7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-degreport", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, AnnotationDbi, limma, pheatmap, rmarkdown, statmod, testthat
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-consensusclusterplus >=1.64.0,<1.65.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-consensusclusterplus >=1.66.0,<1.67.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-broom
     - r-circlize
     - r-cluster
     - r-cowplot
+    - r-dendextend
     - r-dplyr
     - r-ggdendro
     - r-ggplot2
@@ -46,23 +48,25 @@ requirements:
     - r-reshape
     - r-rlang
     - r-scales
+    - r-stringi
     - r-stringr
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-consensusclusterplus >=1.64.0,<1.65.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-consensusclusterplus >=1.66.0,<1.67.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-broom
     - r-circlize
     - r-cluster
     - r-cowplot
+    - r-dendextend
     - r-dplyr
     - r-ggdendro
     - r-ggplot2
@@ -75,6 +79,7 @@ requirements:
     - r-reshape
     - r-rlang
     - r-scales
+    - r-stringi
     - r-stringr
     - r-tibble
     - r-tidyr
diff --git a/recipes/bioconductor-degseq/meta.yaml b/recipes/bioconductor-degseq/meta.yaml
index 1b1c385fc5d8f..6d4d4a1ad423b 100644
--- a/recipes/bioconductor-degseq/meta.yaml
+++ b/recipes/bioconductor-degseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.54.0" %}
+{% set version = "1.56.1" %}
 {% set name = "DEGseq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: befdaa80e6df3dba5b23aba158858b45
+  md5: cc89e25cb7e9afc38b5fb2bba34722b5
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-degseq", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
   build:
     - {{ compiler('c') }}
@@ -35,11 +36,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'LGPL (>=2)'
+  license: 'LGPL-3-or-above'
   summary: 'Identify Differentially Expressed Genes from RNA-seq data'
   description: 'DEGseq is an R package to identify differentially expressed genes from RNA-Seq data.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/LGPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:degseq
     - doi:10.1093/bioinformatics/btp612
diff --git a/recipes/bioconductor-delayedarray/meta.yaml b/recipes/bioconductor-delayedarray/meta.yaml
index b26889d89e854..2096ed4c080c8 100644
--- a/recipes/bioconductor-delayedarray/meta.yaml
+++ b/recipes/bioconductor-delayedarray/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.26.6" %}
+{% set version = "0.28.0" %}
 {% set name = "DelayedArray" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,33 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3d15ca54caa5e28aa00c97dd61db886b
+  md5: 812e7575d6eaa61f5b68364cdf1da3d9
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-delayedarray", max_pin="x.x") }}'
 # Suggests: BiocParallel, HDF5Array (>= 1.17.12), genefilter, SummarizedExperiment, airway, lobstr, DelayedMatrixStats, knitr, rmarkdown, BiocStyle, RUnit
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-s4arrays >=1.0.0,<1.1.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4arrays >=1.2.0,<1.3.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-sparsearray >=1.2.0,<1.3.0'
     - r-base
     - r-matrix
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-s4arrays >=1.0.0,<1.1.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4arrays >=1.2.0,<1.3.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-sparsearray >=1.2.0,<1.3.0'
     - r-base
     - r-matrix
   build:
@@ -49,6 +52,8 @@ about:
   summary: 'A unified framework for working transparently with on-disk and in-memory array-like datasets'
   description: 'Wrapping an array-like object (typically an on-disk object) in a DelayedArray object allows one to perform common array operations on it without loading the object in memory. In order to reduce memory usage and optimize performance, operations on the object are either delayed or executed using a block processing mechanism. Note that this also works on in-memory array-like objects like DataFrame objects (typically with Rle columns), Matrix objects, ordinary arrays and, data frames.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   parent_recipe:
     name: bioconductor-delayedarray
     path: recipes/bioconductor-delayedarray
diff --git a/recipes/bioconductor-delayeddataframe/meta.yaml b/recipes/bioconductor-delayeddataframe/meta.yaml
index 6534ae371b8b5..986a848355d4e 100644
--- a/recipes/bioconductor-delayeddataframe/meta.yaml
+++ b/recipes/bioconductor-delayeddataframe/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "DelayedDataFrame" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 348557d31d23d725601581912e43e2ea
+  md5: dd12410d16a2e6cf7bb022d2aa334bf7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-delayeddataframe", max_pin="x.x") }}'
   noarch: generic
-# Suggests: testthat, knitr, rmarkdown, SeqArray, GDSArray
+# Suggests: testthat, knitr, rmarkdown, BiocStyle, SeqArray, GDSArray
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-delayedmatrixstats/meta.yaml b/recipes/bioconductor-delayedmatrixstats/meta.yaml
index 5bb1eb58c256d..f3b73711617f5 100644
--- a/recipes/bioconductor-delayedmatrixstats/meta.yaml
+++ b/recipes/bioconductor-delayedmatrixstats/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.1" %}
+{% set version = "1.24.0" %}
 {% set name = "DelayedMatrixStats" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 88739eb294c38fc717e77987455a1d58
+  md5: 890845d8c80a2b64cd02b3ff7f1e504d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-delayedmatrixstats", max_pin="x.x") }}'
   noarch: generic
-# Suggests: testthat, knitr, rmarkdown, covr, BiocStyle, microbenchmark, profmem, HDF5Array
+# Suggests: testthat, knitr, rmarkdown, BiocStyle, microbenchmark, profmem, HDF5Array, matrixStats (>= 1.0.0)
 requirements:
   host:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-sparsematrixstats >=1.12.0,<1.13.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-sparsematrixstats >=1.14.0,<1.15.0'
     - r-base
     - 'r-matrix >=1.5-0'
-    - 'r-matrixstats >=1.0.0'
   run:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-sparsematrixstats >=1.12.0,<1.13.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-sparsematrixstats >=1.14.0,<1.15.0'
     - r-base
     - 'r-matrix >=1.5-0'
-    - 'r-matrixstats >=1.0.0'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-delayedrandomarray/meta.yaml b/recipes/bioconductor-delayedrandomarray/meta.yaml
index 435ccc7188e36..084a5e1dbc8b2 100644
--- a/recipes/bioconductor-delayedrandomarray/meta.yaml
+++ b/recipes/bioconductor-delayedrandomarray/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "DelayedRandomArray" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d4147f1b05d871632f2549d95a775883
+  md5: 2f583ab177fd333cf626827fc28a6faf
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-delayedrandomarray", max_pin="x.x") }}'
 # Suggests: testthat, knitr, BiocStyle, rmarkdown, Matrix
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
     - r-base
     - r-bh
     - r-dqrng
@@ -29,7 +30,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
     - r-base
     - r-bh
     - r-dqrng
diff --git a/recipes/bioconductor-delayedtensor/meta.yaml b/recipes/bioconductor-delayedtensor/meta.yaml
index ed7c95961bdc5..be01c68df53e5 100644
--- a/recipes/bioconductor-delayedtensor/meta.yaml
+++ b/recipes/bioconductor-delayedtensor/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "DelayedTensor" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4651a15b7f778aefab7307d6fd600631
+  md5: ee3e89ac7a0b9f3ca79f744edfdc69b8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-delayedtensor", max_pin="x.x") }}'
   noarch: generic
 # Suggests: markdown, rmarkdown, BiocStyle, knitr, testthat, magrittr, dplyr, reticulate
 requirements:
   host:
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedrandomarray >=1.8.0,<1.9.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedrandomarray >=1.10.0,<1.11.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
     - r-base
     - r-einsum
     - r-irlba
     - r-matrix
     - r-rtensor
   run:
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedrandomarray >=1.8.0,<1.9.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedrandomarray >=1.10.0,<1.11.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
     - r-base
     - r-einsum
     - r-irlba
diff --git a/recipes/bioconductor-delocal/meta.yaml b/recipes/bioconductor-delocal/meta.yaml
index 6dc88c6c7f306..f9361e910db48 100644
--- a/recipes/bioconductor-delocal/meta.yaml
+++ b/recipes/bioconductor-delocal/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "DELocal" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6f595f5306f040c92e53f70db5fb4d81
+  md5: 40f2eac89260ff4692fb02047990d048
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-delocal", max_pin="x.x") }}'
   noarch: generic
-# Suggests: biomaRt, knitr, PCRedux, rmarkdown, stringr
+# Suggests: biomaRt, knitr, PCRedux, rmarkdown, stringr, BiocStyle
 requirements:
   host:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
     - r-matrixstats
     - r-reshape2
   run:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-deltacapturec/meta.yaml b/recipes/bioconductor-deltacapturec/meta.yaml
index fc51052ee4e7c..16b711e2ce632 100644
--- a/recipes/bioconductor-deltacapturec/meta.yaml
+++ b/recipes/bioconductor-deltacapturec/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "deltaCaptureC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ac0f8754bd5250993302876e3b443615
+  md5: e70cf57b6d22164dd5712a3441b0a788
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-deltacapturec", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-tictoc
   run:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-tictoc
diff --git a/recipes/bioconductor-deltagseg/meta.yaml b/recipes/bioconductor-deltagseg/meta.yaml
index d4b20475cbb57..a0a6ce76a69a8 100644
--- a/recipes/bioconductor-deltagseg/meta.yaml
+++ b/recipes/bioconductor-deltagseg/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "deltaGseg" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 84ea9181363b1231227685b65a28ca13
+  md5: e92ca25a67a9250f26c6263043c60ee2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-deltagseg", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
diff --git a/recipes/bioconductor-demand/meta.yaml b/recipes/bioconductor-demand/meta.yaml
index 36e5b90b870e2..b56d0286db48a 100644
--- a/recipes/bioconductor-demand/meta.yaml
+++ b/recipes/bioconductor-demand/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "DeMAND" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: dbc37106827433bc654a90a4ac7e6701
+  md5: ccb354bddebbebda6c42453810f10e70
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-demand", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-demuxmix/meta.yaml b/recipes/bioconductor-demuxmix/meta.yaml
index 2c905657b4e60..252585cebc11f 100644
--- a/recipes/bioconductor-demuxmix/meta.yaml
+++ b/recipes/bioconductor-demuxmix/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "demuxmix" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 146120afb774a862ecfb93ec5fb970b0
+  md5: 9bbdcc634e542fe151a50a2511206140
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-demuxmix", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, cowplot, DropletUtils, knitr, reshape2, rmarkdown, testthat (>= 3.0.0)
 requirements:
diff --git a/recipes/bioconductor-demuxsnp/build.sh b/recipes/bioconductor-demuxsnp/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-demuxsnp/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-demuxsnp/meta.yaml b/recipes/bioconductor-demuxsnp/meta.yaml
new file mode 100644
index 0000000000000..ad5982ba15810
--- /dev/null
+++ b/recipes/bioconductor-demuxsnp/meta.yaml
@@ -0,0 +1,61 @@
+{% set version = "1.0.0" %}
+{% set name = "demuxSNP" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 66a0ed302acbc18c7a106d99bf645133
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-demuxsnp", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: knitr, rmarkdown, Seurat, ComplexHeatmap, viridisLite, ggpubr, dittoSeq, EnsDb.Hsapiens.v86, BiocStyle, RefManageR, testthat (>= 3.0.0)
+requirements:
+  host:
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-demuxmix >=1.4.0,<1.5.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
+    - r-base
+    - r-class
+    - r-combinat
+    - r-matrix
+  run:
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-demuxmix >=1.4.0,<1.5.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
+    - r-base
+    - r-class
+    - r-combinat
+    - r-matrix
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'scRNAseq demultiplexing using cell hashing and SNPs'
+  description: 'This package assists in demultiplexing scRNAseq data using both cell hashing and SNPs data. The SNP profile of each group os learned using high confidence assignments from the cell hashing data. Cells which cannot be assigned with high confidence from the cell hashing data are assigned to their most similar group based on their SNPs. We also provide some helper function to optimise SNP selection, create training data and merge SNP data into the SingleCellExperiment framework.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-densvis/meta.yaml b/recipes/bioconductor-densvis/meta.yaml
index aaa52a0863d1a..936a9b9557490 100644
--- a/recipes/bioconductor-densvis/meta.yaml
+++ b/recipes/bioconductor-densvis/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.2" %}
+{% set version = "1.12.0" %}
 {% set name = "densvis" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,33 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: a6a87938d3267e5f4ba279e1c0c91533
+  md5: cf3ee330c8c9f0b396feb398e342cf8d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
-# Suggests: knitr, rmarkdown, BiocStyle, ggplot2, Rtsne, uwot, testthat
+  run_exports: '{{ pin_subpackage("bioconductor-densvis", max_pin="x.x") }}'
+# Suggests: knitr, rmarkdown, BiocStyle, ggplot2, uwot, testthat
 requirements:
   host:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
     - r-assertthat
     - r-base
     - r-irlba
     - r-rcpp
     - r-reticulate
+    - r-rtsne
     - libblas
     - liblapack
   run:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
     - r-assertthat
     - r-base
     - r-irlba
     - r-rcpp
     - r-reticulate
+    - r-rtsne
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
diff --git a/recipes/bioconductor-dep/meta.yaml b/recipes/bioconductor-dep/meta.yaml
index a44133258ced4..6f0664c7a0333 100644
--- a/recipes/bioconductor-dep/meta.yaml
+++ b/recipes/bioconductor-dep/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "DEP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://{{ name|lower }}ot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2d020fdba2ecaec00e6f17559a2a7454
+  md5: 2bfaf5d5bfd3f05c7a7a80742bd43f7c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dep", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, enrichR, knitr, BiocStyle
 requirements:
   host:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-assertthat
     - r-base
     - r-circlize
@@ -46,11 +47,11 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-assertthat
     - r-base
     - r-circlize
diff --git a/recipes/bioconductor-depecher/meta.yaml b/recipes/bioconductor-depecher/meta.yaml
index 32b81b60fc458..74da60263ebdb 100644
--- a/recipes/bioconductor-depecher/meta.yaml
+++ b/recipes/bioconductor-depecher/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "DepecheR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b560cc798d7fb32413c75317b73e45d9
+  md5: 201fe937f16e843f49fbe35a4ae1ebb6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-depecher", max_pin="x.x") }}'
 # Suggests: uwot, testthat, knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-mixomics >=6.24.0,<6.25.0'
+    - 'bioconductor-mixomics >=6.26.0,<6.27.0'
     - r-base
     - 'r-beanplot >=1.2'
+    - 'r-collapse >=1.9.2'
     - 'r-dosnow >=1.0.16'
     - 'r-dplyr >=0.7.8'
     - 'r-fnn >=1.1.3'
@@ -41,9 +43,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-mixomics >=6.24.0,<6.25.0'
+    - 'bioconductor-mixomics >=6.26.0,<6.27.0'
     - r-base
     - 'r-beanplot >=1.2'
+    - 'r-collapse >=1.9.2'
     - 'r-dosnow >=1.0.16'
     - 'r-dplyr >=0.7.8'
     - 'r-fnn >=1.1.3'
diff --git a/recipes/bioconductor-depinfer/meta.yaml b/recipes/bioconductor-depinfer/meta.yaml
index e735db3795146..94dc1dcdf83ca 100644
--- a/recipes/bioconductor-depinfer/meta.yaml
+++ b/recipes/bioconductor-depinfer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "DepInfeR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: dcf243eeb7152508a9beb10faa48f249
+  md5: d673a7cc6ac21a4d899238878c09533f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-depinfer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 3.0.0), knitr, rmarkdown, dplyr, tidyr, tibble, ggplot2, missForest, pheatmap, RColorBrewer, ggrepel, BiocStyle, ggbeeswarm
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-glmnet
     - r-matrixstats
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-glmnet
     - r-matrixstats
diff --git a/recipes/bioconductor-depmap/meta.yaml b/recipes/bioconductor-depmap/meta.yaml
index 515f8263f9737..f38b98fd584e6 100644
--- a/recipes/bioconductor-depmap/meta.yaml
+++ b/recipes/bioconductor-depmap/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "depmap" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d4405c4714a46efd721be9905eddc21f
+  md5: 7f00d05c7f899e622293767baa04e120
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-depmap", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, viridis, gridExtra, ggplot2, readr, tibble, stringr, tidyr
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - r-dplyr
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - r-dplyr
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-depmap/post-link.sh b/recipes/bioconductor-depmap/post-link.sh
index 1f90ee9ff67c0..a1ee9c05ab0be 100644
--- a/recipes/bioconductor-depmap/post-link.sh
+++ b/recipes/bioconductor-depmap/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "depmap-1.14.0"
+installBiocDataPackage.sh "depmap-1.16.0"
diff --git a/recipes/bioconductor-deqms/meta.yaml b/recipes/bioconductor-deqms/meta.yaml
index b1f046d308f58..7fee72622c3bd 100644
--- a/recipes/bioconductor-deqms/meta.yaml
+++ b/recipes/bioconductor-deqms/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "DEqMS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 58542439f1c16afe6974fd4ee95852c4
+  md5: bc308e6f683ca1bf0dcdb703274575ac
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-deqms", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle,knitr,rmarkdown,markdown,plyr,reshape2,farms,utils,ggrepel,ExperimentHub,LSD
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-ggplot2
     - r-matrixstats
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-ggplot2
     - r-matrixstats
diff --git a/recipes/bioconductor-derfinder/meta.yaml b/recipes/bioconductor-derfinder/meta.yaml
index 2c8eafb1cfd89..5f1ca01fd980f 100644
--- a/recipes/bioconductor-derfinder/meta.yaml
+++ b/recipes/bioconductor-derfinder/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "derfinder" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,49 +11,50 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: ba0d27535c6e19834607cc8aabc4de9f
+  md5: a3ef629c180b64b0776c880164603c7b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-derfinder", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle (>= 2.5.19), sessioninfo, derfinderData (>= 0.99.0), derfinderPlot, DESeq2, ggplot2, knitr (>= 1.6), limma, RefManageR, rmarkdown (>= 0.3.3), testthat (>= 2.1.0), TxDb.Hsapiens.UCSC.hg19.knownGene, covr
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-bumphunter >=1.42.0,<1.43.0'
-    - 'bioconductor-derfinderhelper >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicfiles >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-bumphunter >=1.44.0,<1.45.0'
+    - 'bioconductor-derfinderhelper >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicfiles >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-hmisc
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-bumphunter >=1.42.0,<1.43.0'
-    - 'bioconductor-derfinderhelper >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicfiles >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-bumphunter >=1.44.0,<1.45.0'
+    - 'bioconductor-derfinderhelper >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicfiles >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-hmisc
 test:
@@ -63,7 +64,11 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: Artistic-2.0
   summary: 'Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach'
-  description: 'This package provides functions for annotation-agnostic differential expression analysis of RNA-seq data. Two implementations of the DER Finder approach are included in this package (1) single base-level F-statistics and (2) DER identification at the expressed regions-level. The DER Finder approach can also be used to identify differentially bounded ChIP-seq peaks.'
+  description: |
+    This package provides functions for annotation-agnostic differential expression analysis of RNA-seq data.
+    Two implementations of the DER Finder approach are included in this package: (1) single base-level
+    F-statistics and (2) DER identification at the expressed regions-level.
+    The DER Finder approach can also be used to identify differentially bounded ChIP-seq peaks.
 extra:
   identifiers:
     - biotools:derfinder
diff --git a/recipes/bioconductor-derfinderdata/meta.yaml b/recipes/bioconductor-derfinderdata/meta.yaml
index c52d8fcd7b912..ab731b2b7adf4 100644
--- a/recipes/bioconductor-derfinderdata/meta.yaml
+++ b/recipes/bioconductor-derfinderdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.18.0" %}
+{% set version = "2.20.0" %}
 {% set name = "derfinderData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a7787e049bcee25cb354773f1fd2cf27
+  md5: 032efff51d29eae3fc1a5e032c0f3c40
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-derfinderdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: sessioninfo, knitr (>= 1.6), RefManageR, rmarkdown (>= 0.3.3), BiocStyle
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-derfinderdata/post-link.sh b/recipes/bioconductor-derfinderdata/post-link.sh
index cfddf0ccc3eeb..07fd8f6c6666d 100644
--- a/recipes/bioconductor-derfinderdata/post-link.sh
+++ b/recipes/bioconductor-derfinderdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "derfinderdata-2.18.0"
+installBiocDataPackage.sh "derfinderdata-2.20.0"
diff --git a/recipes/bioconductor-derfinderhelper/meta.yaml b/recipes/bioconductor-derfinderhelper/meta.yaml
index 5b4c926b08b6d..d23d5cb1f7b01 100644
--- a/recipes/bioconductor-derfinderhelper/meta.yaml
+++ b/recipes/bioconductor-derfinderhelper/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "derfinderHelper" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 85b9dc14c66f5aa287e9673f955f65da
+  md5: 2544077112525d7f25f34270ed365423
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-derfinderhelper", max_pin="x.x") }}'
   noarch: generic
 # Suggests: sessioninfo, knitr (>= 1.6), BiocStyle (>= 2.5.19), RefManageR, rmarkdown (>= 0.3.3), testthat, covr
 requirements:
   host:
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-matrix
   run:
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-matrix
 test:
diff --git a/recipes/bioconductor-derfinderplot/meta.yaml b/recipes/bioconductor-derfinderplot/meta.yaml
index 77fbfe9a49ff5..2890878efb489 100644
--- a/recipes/bioconductor-derfinderplot/meta.yaml
+++ b/recipes/bioconductor-derfinderplot/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "derfinderPlot" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9c60bba2ab936a7c037c3d6311a6b18d
+  md5: c3dbd553554f3b043b8f03e4b05a964a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-derfinderplot", max_pin="x.x") }}'
   noarch: generic
 # Suggests: biovizBase (>= 1.27.2), bumphunter (>= 1.7.6), derfinderData (>= 0.99.0), sessioninfo, knitr (>= 1.6), BiocStyle (>= 2.5.19), org.Hs.eg.db, RefManageR, rmarkdown (>= 0.3.3), testthat, TxDb.Hsapiens.UCSC.hg19.knownGene, covr
 requirements:
   host:
-    - 'bioconductor-derfinder >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-derfinder >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - r-plyr
@@ -36,14 +37,14 @@ requirements:
     - r-reshape2
     - r-scales
   run:
-    - 'bioconductor-derfinder >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-derfinder >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - r-plyr
diff --git a/recipes/bioconductor-descan2/meta.yaml b/recipes/bioconductor-descan2/meta.yaml
index 8bfd045281a86..655f19ab5b6b3 100644
--- a/recipes/bioconductor-descan2/meta.yaml
+++ b/recipes/bioconductor-descan2/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.1" %}
+{% set version = "1.22.0" %}
 {% set name = "DEScan2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5c5a508823352ccf16d9af41b273a9a5
+  md5: 476f052d4a86e27d332812852fd7e0c1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-descan2", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, edgeR, limma, EDASeq, RUVSeq, RColorBrewer, statmod
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-chippeakanno >=3.34.0,<3.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-chippeakanno >=3.36.0,<3.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-glue
@@ -40,17 +41,17 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-chippeakanno >=3.34.0,<3.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-chippeakanno >=3.36.0,<3.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-glue
diff --git a/recipes/bioconductor-deseq2/meta.yaml b/recipes/bioconductor-deseq2/meta.yaml
index bd256801fe5c6..b8c6af265423b 100644
--- a/recipes/bioconductor-deseq2/meta.yaml
+++ b/recipes/bioconductor-deseq2/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.2" %}
+{% set version = "1.42.0" %}
 {% set name = "DESeq2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8869279f9f3cd28d15e65ea75f8d8aab
+  md5: 5eb89526ce9fd4da98b1a5e0b5ba0bf3
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-deseq2", max_pin="x.x") }}'
 # Suggests: testthat, knitr, rmarkdown, vsn, pheatmap, RColorBrewer, apeglm, ashr, tximport, tximeta, tximportData, readr, pbapply, airway, pasilla (>= 0.2.10), glmGamPoi, BiocManager
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - bioconductor-apeglm
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-ashr
     - r-base
-    - r-ggplot2
+    - 'r-ggplot2 >=3.4.0'
     - r-locfit
     - r-matrixstats
     - 'r-rcpp >=0.11.0'
@@ -36,15 +40,18 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - bioconductor-apeglm
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-ashr
     - r-base
-    - r-ggplot2
+    - 'r-ggplot2 >=3.4.0'
     - r-locfit
     - r-matrixstats
     - 'r-rcpp >=0.11.0'
diff --git a/recipes/bioconductor-desingle/meta.yaml b/recipes/bioconductor-desingle/meta.yaml
index bde60c8322a09..2f3cbbd1c30a4 100644
--- a/recipes/bioconductor-desingle/meta.yaml
+++ b/recipes/bioconductor-desingle/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "DEsingle" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ee4807f0e64627ced9f59afee0b77b5b
+  md5: 6969e960919434ccd6e5b9bdd926aece
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-desingle", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, SingleCellExperiment
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - 'r-bbmle >=1.0.18'
     - 'r-gamlss >=4.4-0'
@@ -31,7 +32,7 @@ requirements:
     - 'r-pscl >=1.4.9'
     - 'r-vgam >=1.0-2'
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - 'r-bbmle >=1.0.18'
     - 'r-gamlss >=4.4-0'
diff --git a/recipes/bioconductor-desousa2013/meta.yaml b/recipes/bioconductor-desousa2013/meta.yaml
index 4e0410693b971..ffb817248a4d9 100644
--- a/recipes/bioconductor-desousa2013/meta.yaml
+++ b/recipes/bioconductor-desousa2013/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "DeSousa2013" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1a12b8cbbcf6b3ccc758dacd1ef01852
+  md5: 41a3ca5cba40653eb4be04203aaf60ac
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-desousa2013", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-consensusclusterplus >=1.64.0,<1.65.0'
-    - 'bioconductor-frma >=1.52.0,<1.53.0'
-    - 'bioconductor-frmatools >=1.52.0,<1.53.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-consensusclusterplus >=1.66.0,<1.67.0'
+    - 'bioconductor-frma >=1.54.0,<1.55.0'
+    - 'bioconductor-frmatools >=1.54.0,<1.55.0'
     - 'bioconductor-hgu133plus2.db >=3.13.0,<3.14.0'
     - 'bioconductor-hgu133plus2frmavecs >=1.5.0,<1.6.0'
-    - 'bioconductor-siggenes >=1.74.0,<1.75.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-siggenes >=1.76.0,<1.77.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-cluster
     - r-gplots
@@ -38,16 +39,16 @@ requirements:
     - r-rocr
     - r-survival
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-consensusclusterplus >=1.64.0,<1.65.0'
-    - 'bioconductor-frma >=1.52.0,<1.53.0'
-    - 'bioconductor-frmatools >=1.52.0,<1.53.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-consensusclusterplus >=1.66.0,<1.67.0'
+    - 'bioconductor-frma >=1.54.0,<1.55.0'
+    - 'bioconductor-frmatools >=1.54.0,<1.55.0'
     - 'bioconductor-hgu133plus2.db >=3.13.0,<3.14.0'
     - 'bioconductor-hgu133plus2frmavecs >=1.5.0,<1.6.0'
-    - 'bioconductor-siggenes >=1.74.0,<1.75.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-siggenes >=1.76.0,<1.77.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-cluster
     - r-gplots
@@ -56,7 +57,7 @@ requirements:
     - r-rocr
     - r-survival
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
   build:
     - {{ cdt('mesa-libgl-devel') }}  # [linux]
     - {{ cdt('mesa-dri-drivers') }}  # [linux]
diff --git a/recipes/bioconductor-desousa2013/post-link.sh b/recipes/bioconductor-desousa2013/post-link.sh
index acd6ef56f68c2..4c31f29da3892 100644
--- a/recipes/bioconductor-desousa2013/post-link.sh
+++ b/recipes/bioconductor-desousa2013/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "desousa2013-1.36.0"
+installBiocDataPackage.sh "desousa2013-1.38.0"
diff --git a/recipes/bioconductor-despace/meta.yaml b/recipes/bioconductor-despace/meta.yaml
index 1628764112915..6ad56c3815333 100644
--- a/recipes/bioconductor-despace/meta.yaml
+++ b/recipes/bioconductor-despace/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "DESpace" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ebe4a43a2479a091a19a012ae6db464c
+  md5: 436915bded5ec94da6e412ccdff80e8e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-despace", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, BiocStyle, ExperimentHub, concaveman, spatialLIBD, purrr, scuttle, utils
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - r-cowplot
@@ -41,13 +42,13 @@ requirements:
     - r-patchwork
     - r-scales
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - r-cowplot
diff --git a/recipes/bioconductor-destiny/meta.yaml b/recipes/bioconductor-destiny/meta.yaml
index d92ce04f87d79..4bb1c1f0f7225 100644
--- a/recipes/bioconductor-destiny/meta.yaml
+++ b/recipes/bioconductor-destiny/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.14.0" %}
+{% set version = "3.16.0" %}
 {% set name = "destiny" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 251c5635adf088e2ee70626a60e1489d
+  md5: b86a5cbd268832cb7a6da5999e50393b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-destiny", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, igraph, testthat, FNN, tidyverse, gridExtra, cowplot, conflicted, viridis, rgl, scRNAseq, org.Mm.eg.db, scran, repr
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot.multistats
     - r-ggplot2
@@ -47,11 +48,11 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot.multistats
     - r-ggplot2
diff --git a/recipes/bioconductor-desubs/meta.yaml b/recipes/bioconductor-desubs/meta.yaml
index 5840dfa722811..98b6a9306f8b5 100644
--- a/recipes/bioconductor-desubs/meta.yaml
+++ b/recipes/bioconductor-desubs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "DEsubs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e37c127e2b3fdfe0613d43ef5c2e949c
+  md5: 1e2b74c85e35888eab89ac39a363c32c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-desubs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-ebseq >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-ebseq >=2.0.0,<2.1.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
     - r-base
     - r-circlize
     - r-ggplot2
@@ -37,12 +38,12 @@ requirements:
     - r-nbpseq
     - r-pheatmap
   run:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-ebseq >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-ebseq >=2.0.0,<2.1.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
     - r-base
     - r-circlize
     - r-ggplot2
diff --git a/recipes/bioconductor-dewseq/meta.yaml b/recipes/bioconductor-dewseq/meta.yaml
index dc3676bb2df17..035c2b2dbe9ed 100644
--- a/recipes/bioconductor-dewseq/meta.yaml
+++ b/recipes/bioconductor-dewseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.2" %}
 {% set name = "DEWSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 02180a59d83e6a2ef88b2bea89104832
+  md5: 4164c3c7d4967586861e0c2d40815ec5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dewseq", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr, rmarkdown, testthat, BiocStyle, IHW
+# Suggests: knitr, rmarkdown, tidyverse, testthat, BiocStyle, IHW
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-data.table >=1.11.8'
     - r-r.utils
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-data.table >=1.11.8'
     - r-r.utils
diff --git a/recipes/bioconductor-dexma/meta.yaml b/recipes/bioconductor-dexma/meta.yaml
index 555a80d3f5b3e..f828df78731c2 100644
--- a/recipes/bioconductor-dexma/meta.yaml
+++ b/recipes/bioconductor-dexma/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.6" %}
 {% set name = "DExMA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8155bdaa13020bf598c9357286d290cb
+  md5: 7397f231c7a241e6bfb258ca064ff8b7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dexma", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, qpdf, BiocGenerics, RUnit
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-dexmadata >=1.8.0,<1.9.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-snpstats >=1.50.0,<1.51.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-dexmadata >=1.10.0,<1.11.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-snpstats >=1.52.0,<1.53.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-bnstruct
     - r-pheatmap
@@ -36,13 +37,13 @@ requirements:
     - r-scales
     - r-swamp
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-dexmadata >=1.8.0,<1.9.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-snpstats >=1.50.0,<1.51.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-dexmadata >=1.10.0,<1.11.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-snpstats >=1.52.0,<1.53.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-bnstruct
     - r-pheatmap
diff --git a/recipes/bioconductor-dexmadata/meta.yaml b/recipes/bioconductor-dexmadata/meta.yaml
index 7c093e1e7363b..418aaacbbfa95 100644
--- a/recipes/bioconductor-dexmadata/meta.yaml
+++ b/recipes/bioconductor-dexmadata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "DExMAdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: bc2fd62dd24eeaee294a624610b75918
+  md5: 3d2a9cc7d0044ffc23e572f4c5cc4426
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dexmadata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-dexmadata/post-link.sh b/recipes/bioconductor-dexmadata/post-link.sh
index 166930720a76a..deb9a0366746c 100644
--- a/recipes/bioconductor-dexmadata/post-link.sh
+++ b/recipes/bioconductor-dexmadata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "dexmadata-1.8.0"
+installBiocDataPackage.sh "dexmadata-1.10.0"
diff --git a/recipes/bioconductor-dexseq/build.sh b/recipes/bioconductor-dexseq/build.sh
index c1d13421f5f1e..a9c2ad544d4dc 100644
--- a/recipes/bioconductor-dexseq/build.sh
+++ b/recipes/bioconductor-dexseq/build.sh
@@ -8,4 +8,11 @@ CXX=$CXX
 CXX98=$CXX
 CXX11=$CXX
 CXX14=$CXX" > ~/.R/Makevars
-$R CMD INSTALL --build .
\ No newline at end of file
+
+$R CMD INSTALL --build .
+python_path=$PREFIX/lib/R/library/DEXSeq/python_scripts
+echo python3 ${python_path}/dexseq_prepare_annotation.py '"$@"' > $PREFIX/bin/dexseq_prepare_annotation.py
+chmod +x $PREFIX/bin/dexseq_prepare_annotation.py
+
+echo python3 ${python_path}/dexseq_count.py '"$@"' > $PREFIX/bin/dexseq_count.py
+chmod +x $PREFIX/bin/dexseq_count.py
diff --git a/recipes/bioconductor-dexseq/meta.yaml b/recipes/bioconductor-dexseq/meta.yaml
index 0a42a1c1397a8..c2dea7842a4e5 100644
--- a/recipes/bioconductor-dexseq/meta.yaml
+++ b/recipes/bioconductor-dexseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "DEXSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,48 +11,50 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 83652c928d49e5ea8c284a5b5d37a46a
+  md5: 8e5876f927b0b0cdfc4a402bfb4fb3d6
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dexseq", max_pin="x.x") }}'
   noarch: generic
-# Suggests: GenomicFeatures (>= 1.13.29), pasilla (>= 0.2.22), parathyroidSE, BiocStyle, knitr, rmarkdown, testthat, pasillaBamSubset, GenomicAlignments, roxygen2
+# Suggests: GenomicFeatures (>= 1.13.29), pasilla (>= 0.2.22), parathyroidSE, BiocStyle, knitr, rmarkdown, testthat, pasillaBamSubset, GenomicAlignments, roxygen2, glmGamPoi
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-geneplotter >=1.78.0,<1.79.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-geneplotter >=1.80.0,<1.81.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-hwriter
     - r-rcolorbrewer
     - r-statmod
     - r-stringr
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-geneplotter >=1.78.0,<1.79.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-geneplotter >=1.80.0,<1.81.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'htseq >=2.0.2,<2.1'
     - r-base
     - r-hwriter
     - r-rcolorbrewer
@@ -61,6 +63,8 @@ requirements:
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
+    - dexseq_prepare_annotation.py --help
+    - dexseq_count.py --help
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: 'GPL (>= 3)'
diff --git a/recipes/bioconductor-dfp/meta.yaml b/recipes/bioconductor-dfp/meta.yaml
index 6fbaa70b6753c..846c1dbfc78a7 100644
--- a/recipes/bioconductor-dfp/meta.yaml
+++ b/recipes/bioconductor-dfp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.58.0" %}
+{% set version = "1.60.0" %}
 {% set name = "DFP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c8f6a4937ae9aaadca48470a41911245
+  md5: 5eb14fe67a6dd0599cd24c3473eec349
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dfp", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-dialignr/meta.yaml b/recipes/bioconductor-dialignr/meta.yaml
index 4aa8508dc2b67..b0ad1e11855dc 100644
--- a/recipes/bioconductor-dialignr/meta.yaml
+++ b/recipes/bioconductor-dialignr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.8.0" %}
+{% set version = "2.10.0" %}
 {% set name = "DIAlignR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 64265ce3d538110aac22ed20a151c9b3
+  md5: b67387fec7e8a9e5de5189fecd7077aa
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dialignr", max_pin="x.x") }}'
 # Suggests: knitr, akima, lattice, scales, gridExtra, latticeExtra, rmarkdown, BiocStyle, BiocParallel, testthat (>= 2.1.0)
 # SystemRequirements: C++14
 requirements:
   host:
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
     - r-ape
     - r-base
     - r-bit64
@@ -44,7 +45,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
     - r-ape
     - r-base
     - r-bit64
diff --git a/recipes/bioconductor-diffbind/meta.yaml b/recipes/bioconductor-diffbind/meta.yaml
index b1b7a2f20e370..57d109de6119d 100644
--- a/recipes/bioconductor-diffbind/meta.yaml
+++ b/recipes/bioconductor-diffbind/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.10.0" %}
+{% set version = "3.12.0" %}
 {% set name = "DiffBind" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9cdbcead719d0c3d268ff9184c2a146e
+  md5: aa7c15e33713ad0ced01a5b6442e2d3d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-diffbind", max_pin="x.x") }}'
 # Suggests: BiocStyle, testthat, xtable, rgl, XLConnect, edgeR, csaw, BSgenome, GenomeInfoDb, profileplyr, rtracklayer, grid
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-apeglm >=1.22.0,<1.23.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-greylistchip >=1.32.0,<1.33.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-systempiper >=2.6.0,<2.7.0'
+    - 'bioconductor-apeglm >=1.24.0,<1.25.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-greylistchip >=1.34.0,<1.35.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-systempiper >=2.8.0,<2.9.0'
     - r-amap
     - r-ashr
     - r-base
@@ -48,19 +49,19 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-apeglm >=1.22.0,<1.23.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-greylistchip >=1.32.0,<1.33.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-systempiper >=2.6.0,<2.7.0'
+    - 'bioconductor-apeglm >=1.24.0,<1.25.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-greylistchip >=1.34.0,<1.35.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-systempiper >=2.8.0,<2.9.0'
     - r-amap
     - r-ashr
     - r-base
diff --git a/recipes/bioconductor-diffcoexp/meta.yaml b/recipes/bioconductor-diffcoexp/meta.yaml
index 5e7d4bebf284e..aa9d59c7e2550 100644
--- a/recipes/bioconductor-diffcoexp/meta.yaml
+++ b/recipes/bioconductor-diffcoexp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "diffcoexp" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 161074b1baaa04dfba989eb96d6931ac
+  md5: 0985f656837da53f557041125f7583a0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-diffcoexp", max_pin="x.x") }}'
   noarch: generic
-# Suggests: GEOquery
+# Suggests: GEOquery, RUnit
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-diffcorr
     - r-igraph
     - r-psych
     - r-wgcna
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-diffcorr
     - r-igraph
diff --git a/recipes/bioconductor-diffcyt/meta.yaml b/recipes/bioconductor-diffcyt/meta.yaml
index e99566efd27fe..cd7e975c7fa60 100644
--- a/recipes/bioconductor-diffcyt/meta.yaml
+++ b/recipes/bioconductor-diffcyt/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "diffcyt" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 4fc1208b2b23cb07450a1b1f9250594b
+  md5: 8118267e493c2646533a9730a876d340
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-diffcyt", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, HDCytoData, CATALYST
 requirements:
   host:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowsom >=2.8.0,<2.9.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowsom >=2.10.0,<2.11.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-dplyr
@@ -37,13 +38,13 @@ requirements:
     - r-reshape2
     - r-tidyr
   run:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowsom >=2.8.0,<2.9.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowsom >=2.10.0,<2.11.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-dplyr
diff --git a/recipes/bioconductor-differentialregulation/meta.yaml b/recipes/bioconductor-differentialregulation/meta.yaml
index eff49e2146e20..a4577cc53de1e 100644
--- a/recipes/bioconductor-differentialregulation/meta.yaml
+++ b/recipes/bioconductor-differentialregulation/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.2" %}
+{% set version = "2.0.2" %}
 {% set name = "DifferentialRegulation" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 37854686cce5bc0d3bdf3b839ad04d69
+  md5: 875793d502c3e521b4faa3eba0d1c2e7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-differentialregulation", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, testthat, BiocStyle
-# SystemRequirements: C++11
+# SystemRequirements: C++17
 requirements:
   host:
-    - 'bioconductor-bandits >=1.16.0,<1.17.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tximport >=1.28.0,<1.29.0'
+    - 'bioconductor-bandits >=1.18.0,<1.19.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tximport >=1.30.0,<1.31.0'
     - r-base
     - r-data.table
     - r-doparallel
     - r-dorng
     - r-foreach
     - r-ggplot2
+    - r-gridextra
     - r-mass
     - r-matrix
     - r-rcpp
@@ -38,16 +40,17 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-bandits >=1.16.0,<1.17.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tximport >=1.28.0,<1.29.0'
+    - 'bioconductor-bandits >=1.18.0,<1.19.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tximport >=1.30.0,<1.31.0'
     - r-base
     - r-data.table
     - r-doparallel
     - r-dorng
     - r-foreach
     - r-ggplot2
+    - r-gridextra
     - r-mass
     - r-matrix
     - r-rcpp
diff --git a/recipes/bioconductor-diffgeneanalysis/meta.yaml b/recipes/bioconductor-diffgeneanalysis/meta.yaml
index 26231b27f9c7b..2ddba971b2d64 100644
--- a/recipes/bioconductor-diffgeneanalysis/meta.yaml
+++ b/recipes/bioconductor-diffgeneanalysis/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.82.0" %}
+{% set version = "1.84.0" %}
 {% set name = "diffGeneAnalysis" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3dd06a23dac4ee41a326424187d4082b
+  md5: aa3d8c4ce3b83b8a6f02e87384dd649f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-diffgeneanalysis", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-diffhic/meta.yaml b/recipes/bioconductor-diffhic/meta.yaml
index 19abc926ef125..a3b151ea656d1 100644
--- a/recipes/bioconductor-diffhic/meta.yaml
+++ b/recipes/bioconductor-diffhic/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "diffHic" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,56 +11,57 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8a1e279c2d1f02340a6cbcc771e64ce3
+  md5: ba97084f7b4e4510514df43be6eb9bf8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-diffhic", max_pin="x.x") }}'
 # Suggests: BSgenome.Ecoli.NCBI.20080805, Matrix, testthat
 # SystemRequirements: C++11, GNU make
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-csaw >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-csaw >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-locfit
     - r-rcpp
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-csaw >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-csaw >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-locfit
     - r-rcpp
diff --git a/recipes/bioconductor-difflogo/meta.yaml b/recipes/bioconductor-difflogo/meta.yaml
index 7655cc38189e1..7021a22253322 100644
--- a/recipes/bioconductor-difflogo/meta.yaml
+++ b/recipes/bioconductor-difflogo/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.24.0" %}
+{% set version = "2.26.0" %}
 {% set name = "DiffLogo" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 37d13c84d12b18ac6a302bd4ed9672fe
+  md5: f122cc5f6153c8dc4fabe92b33d1e608
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-difflogo", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, seqLogo, MotifDb
 requirements:
diff --git a/recipes/bioconductor-diffloopdata/meta.yaml b/recipes/bioconductor-diffloopdata/meta.yaml
index fa1e401e6f017..5578e9031bc30 100644
--- a/recipes/bioconductor-diffloopdata/meta.yaml
+++ b/recipes/bioconductor-diffloopdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "diffloopdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 8e004a82f024eb82c188415e8ca65563
+  md5: 748ee71ae44999ca2c568619ad5a47eb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-diffloopdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-diffloopdata/post-link.sh b/recipes/bioconductor-diffloopdata/post-link.sh
index 73218bbd38264..51e96d69fdede 100644
--- a/recipes/bioconductor-diffloopdata/post-link.sh
+++ b/recipes/bioconductor-diffloopdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "diffloopdata-1.28.0"
+installBiocDataPackage.sh "diffloopdata-1.30.0"
diff --git a/recipes/bioconductor-diffustats/meta.yaml b/recipes/bioconductor-diffustats/meta.yaml
index e61fddfc151de..0a7ea0001788f 100644
--- a/recipes/bioconductor-diffustats/meta.yaml
+++ b/recipes/bioconductor-diffustats/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "diffuStats" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: aafc3aa67189fbbb04b4ac8ea2df5280
+  md5: 7c47ae0431034f3de807ad1fa3684530
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-diffustats", max_pin="x.x") }}'
 # Suggests: testthat, knitr, rmarkdown, ggplot2, ggsci, igraphdata, BiocStyle, reshape2, utils
 # SystemRequirements: GNU make
 requirements:
diff --git a/recipes/bioconductor-diffutr/meta.yaml b/recipes/bioconductor-diffutr/meta.yaml
index 59d6828c1d6dc..e43e853baf8f8 100644
--- a/recipes/bioconductor-diffutr/meta.yaml
+++ b/recipes/bioconductor-diffutr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "diffUTR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b7c06f1c637e763f2dd8ac0209145fa2
+  md5: 10b4af48c1a3f5e823c67cf569dcf1c2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-diffutr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-dexseq >=1.46.0,<1.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rsubread >=2.14.0,<2.15.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-dexseq >=1.48.0,<1.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rsubread >=2.16.0,<2.17.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -41,18 +42,18 @@ requirements:
     - r-stringi
     - r-viridislite
   run:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-dexseq >=1.46.0,<1.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rsubread >=2.14.0,<2.15.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-dexseq >=1.48.0,<1.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rsubread >=2.16.0,<2.17.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-diggit/meta.yaml b/recipes/bioconductor-diggit/meta.yaml
index 4c5fcd80a3b97..43b921f1c6b65 100644
--- a/recipes/bioconductor-diggit/meta.yaml
+++ b/recipes/bioconductor-diggit/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "diggit" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 51bae1ffaac56dfb95c2a3a0bdc769ec
+  md5: 8685d9b55ebfad0b44d6ca96d6fb4ab0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-diggit", max_pin="x.x") }}'
   noarch: generic
 # Suggests: diggitdata
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-viper >=1.34.0,<1.35.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-viper >=1.36.0,<1.37.0'
     - r-base
     - r-ks
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-viper >=1.34.0,<1.35.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-viper >=1.36.0,<1.37.0'
     - r-base
     - r-ks
 test:
diff --git a/recipes/bioconductor-diggitdata/meta.yaml b/recipes/bioconductor-diggitdata/meta.yaml
index e50de6a3e7821..b4c6cdf57ec45 100644
--- a/recipes/bioconductor-diggitdata/meta.yaml
+++ b/recipes/bioconductor-diggitdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "diggitdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d68dbde08e8d4b936a15a73a23a48830
+  md5: 48dc6a1a35dae2169279a2766e3b56de
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-diggitdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-viper >=1.34.0,<1.35.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-viper >=1.36.0,<1.37.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-viper >=1.34.0,<1.35.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-viper >=1.36.0,<1.37.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-diggitdata/post-link.sh b/recipes/bioconductor-diggitdata/post-link.sh
index d1dfc6fddbbe7..3d3e3107cca47 100644
--- a/recipes/bioconductor-diggitdata/post-link.sh
+++ b/recipes/bioconductor-diggitdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "diggitdata-1.32.0"
+installBiocDataPackage.sh "diggitdata-1.34.0"
diff --git a/recipes/bioconductor-dino/meta.yaml b/recipes/bioconductor-dino/meta.yaml
index e7d9e88c73391..f3775ab4fc288 100644
--- a/recipes/bioconductor-dino/meta.yaml
+++ b/recipes/bioconductor-dino/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "Dino" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0c8e15f69998933ef26099e60db42b92
+  md5: cf084f6d83c8245a5c4969849a7e3e82
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dino", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 2.1.0), knitr, rmarkdown, BiocStyle, devtools, ggplot2, gridExtra, ggpubr, grid, magick, hexbin
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - r-matrixstats
     - r-seurat
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - r-matrixstats
diff --git a/recipes/bioconductor-dir.expiry/meta.yaml b/recipes/bioconductor-dir.expiry/meta.yaml
index e916f0fbdac8d..77e5aabe1d30e 100644
--- a/recipes/bioconductor-dir.expiry/meta.yaml
+++ b/recipes/bioconductor-dir.expiry/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "dir.expiry" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 21f10f90c60b2b127529b1b1028d5756
+  md5: ddefb728416ca4283805e19a898e9245
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dir.expiry", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, knitr, testthat, BiocStyle
 requirements:
diff --git a/recipes/bioconductor-director/meta.yaml b/recipes/bioconductor-director/meta.yaml
index d3f2403c8d18c..8cd98393738e0 100644
--- a/recipes/bioconductor-director/meta.yaml
+++ b/recipes/bioconductor-director/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "Director" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 41504b173dd3af18b1ee7ba53979e0e5
+  md5: 7c6c9d1a4762ffbdf723111273ee0899
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-director", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-dirichletmultinomial/meta.yaml b/recipes/bioconductor-dirichletmultinomial/meta.yaml
index 39b57980f9af4..94f6743365b39 100644
--- a/recipes/bioconductor-dirichletmultinomial/meta.yaml
+++ b/recipes/bioconductor-dirichletmultinomial/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "DirichletMultinomial" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 645e54be0954e16b383584892733e45d
+  md5: 8527c543b1ada9640d2f434fb516ff4e
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dirichletmultinomial", max_pin="x.x") }}'
 # Suggests: lattice, parallel, MASS, RColorBrewer, xtable
 # SystemRequirements: gsl
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - libblas
     - liblapack
     - gsl
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - gsl
   build:
@@ -42,11 +43,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: LGPL-3
+  license: LGPL-3.0-only
   summary: 'Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data'
   description: 'Dirichlet-multinomial mixture models can be used to describe variability in microbial metagenomic data. This package is an interface to code originally made available by Holmes, Harris, and Quince, 2012, PLoS ONE 7(2): 1-15, as discussed further in the man page for this package, ?DirichletMultinomial.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/LGPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:dirichletmultinomial
     - doi:10.1371/journal.pone.0030126
diff --git a/recipes/bioconductor-discordant/meta.yaml b/recipes/bioconductor-discordant/meta.yaml
index 35fbc9e4ae863..8a2f3fd4b1593 100644
--- a/recipes/bioconductor-discordant/meta.yaml
+++ b/recipes/bioconductor-discordant/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "discordant" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,16 +11,17 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 8e0656f834cd221da58ba523968b30bc
+  md5: 78ce10a5d9777c9db9b72fec29688bee
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-discordant", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-biwt
     - r-dplyr
@@ -30,7 +31,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-biwt
     - r-dplyr
diff --git a/recipes/bioconductor-discorhythm/meta.yaml b/recipes/bioconductor-discorhythm/meta.yaml
index a66ba2d3d9725..f66f116d7b1fa 100644
--- a/recipes/bioconductor-discorhythm/meta.yaml
+++ b/recipes/bioconductor-discorhythm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "DiscoRhythm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c96324132931c93539174ad49ee1b914
+  md5: c502bfa871cb7e3aa322684117a70b2f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-discorhythm", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat
 # SystemRequirements: To generate html reports pandoc (http://pandoc.org/installing.html) is required.
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-broom
     - r-data.table
@@ -55,10 +56,10 @@ requirements:
     - r-zip
     - pandoc
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-broom
     - r-data.table
diff --git a/recipes/bioconductor-epialleler/build_failure.linux-64.yaml b/recipes/bioconductor-distinct/build_failure.linux-64.yaml
similarity index 50%
rename from recipes/bioconductor-epialleler/build_failure.linux-64.yaml
rename to recipes/bioconductor-distinct/build_failure.linux-64.yaml
index a2c779ff875b4..b4346b41f3fe8 100644
--- a/recipes/bioconductor-epialleler/build_failure.linux-64.yaml
+++ b/recipes/bioconductor-distinct/build_failure.linux-64.yaml
@@ -1,10 +1,20 @@
-recipe_sha: 1790843d2500d088b5d32221df8c9324504c23ad8074e7e54ca8e877c8c6225f  # The commit at which this recipe failed to build.
+recipe_sha: 4cdee96b11c599d7d86852005b1fcdb8fc168a77b8c4cd0973697dbfc2af519f  # The commit at which this recipe failed to build.
 skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
-log: |-
-  source tree in: /opt/conda/conda-bld/bioconductor-epialleler_1689837647931/work
-  export PREFIX=/opt/conda/conda-bld/bioconductor-epialleler_1689837647931/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold
-  export BUILD_PREFIX=/opt/conda/conda-bld/bioconductor-epialleler_1689837647931/_build_env
-  export SRC_DIR=/opt/conda/conda-bld/bioconductor-epialleler_1689837647931/work
+category: |-
+  compiler error
+log: |2-
+
+  An HTTP error occurred when trying to retrieve this URL.
+  HTTP errors are often intermittent, and a simple retry will get you on your way.
+  Downloading https://bioconductor.org/packages/3.18/bioc/src/contrib/Archive/distinct/distinct_1.14.0.tar.gz
+  INFO:conda_build.source:Downloading https://bioconductor.org/packages/3.18/bioc/src/contrib/Archive/distinct/distinct_1.14.0.tar.gz
+  Success
+  INFO:conda_build.source:Success
+  Extracting download
+  source tree in: /opt/conda/conda-bld/bioconductor-distinct_1703301470415/work
+  export PREFIX=/opt/conda/conda-bld/bioconductor-distinct_1703301470415/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p
+  export BUILD_PREFIX=/opt/conda/conda-bld/bioconductor-distinct_1703301470415/_build_env
+  export SRC_DIR=/opt/conda/conda-bld/bioconductor-distinct_1703301470415/work
   INFO: activate-binutils_linux-64.sh made the following environmental changes:
   ADDR2LINE=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-addr2line
   AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ar
@@ -26,15 +36,15 @@ log: |-
   BUILD=x86_64-conda-linux-gnu
   CC=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc
   CC_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc
-  CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-epialleler-1.8.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
-  CMAKE_ARGS=-DCMAKE_AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ar -DCMAKE_CXX_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ar -DCMAKE_C_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ar -DCMAKE_RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ranlib -DCMAKE_CXX_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ranlib -DCMAKE_C_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ranlib -DCMAKE_LINKER=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ld -DCMAKE_STRIP=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-strip -DCMAKE_FIND_ROOT_PATH_MODE_PROGRAM=NEVER -DCMAKE_FIND_ROOT_PATH_MODE_LIBRARY=ONLY -DCMAKE_FIND_ROOT_PATH_MODE_INCLUDE=ONLY -DCMAKE_FIND_ROOT_PATH=$PREFIX;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot -DCMAKE_INSTALL_PREFIX=$PREFIX -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_PROGRAM_PATH=$BUILD_PREFIX/bin;$PREFIX/bin
+  CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-distinct-1.14.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
+  CMAKE_ARGS=-DCMAKE_AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ar -DCMAKE_CXX_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ar -DCMAKE_C_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ar -DCMAKE_RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ranlib -DCMAKE_CXX_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ranlib -DCMAKE_C_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ranlib -DCMAKE_LINKER=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ld -DCMAKE_STRIP=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-strip -DCMAKE_BUILD_TYPE=Release -DCMAKE_FIND_ROOT_PATH_MODE_PROGRAM=NEVER -DCMAKE_FIND_ROOT_PATH_MODE_LIBRARY=ONLY -DCMAKE_FIND_ROOT_PATH_MODE_INCLUDE=ONLY -DCMAKE_FIND_ROOT_PATH=$PREFIX;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot -DCMAKE_INSTALL_PREFIX=$PREFIX -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_PROGRAM_PATH=$BUILD_PREFIX/bin;$PREFIX/bin
   CMAKE_PREFIX_PATH=$PREFIX:$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr
   CONDA_BUILD_SYSROOT=$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot
   CONDA_TOOLCHAIN_BUILD=x86_64-conda-linux-gnu
   CONDA_TOOLCHAIN_HOST=x86_64-conda-linux-gnu
   CPP=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cpp
   CPPFLAGS=-DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include
-  DEBUG_CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-epialleler-1.8.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
+  DEBUG_CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-distinct-1.14.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
   DEBUG_CPPFLAGS=-D_DEBUG -D_FORTIFY_SOURCE=2 -Og -isystem $PREFIX/include
   GCC=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc
   GCC_AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ar
@@ -50,39 +60,31 @@ log: |-
   -CONDA_BUILD_SYSROOT=
   INFO: activate-gxx_linux-64.sh made the following environmental changes:
   CXX=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c
-  CXXFLAGS=-fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-epialleler-1.8.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
+  CXXFLAGS=-fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-distinct-1.14.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
   CXX_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c
-  DEBUG_CXXFLAGS=-fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-epialleler-1.8.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
+  DEBUG_CXXFLAGS=-fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/bioconductor-distinct-1.14.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
   GXX=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-g
   During startup - Warning message:
   Setting LC_TIME failed, using "C"
-  * installing to library /opt/conda/conda-bld/bioconductor-epialleler_1689837647931/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/R/library
-  * installing *source* package epialleleR ...
+  * installing to library /opt/conda/conda-bld/bioconductor-distinct_1703301470415/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/R/library
+  * installing *source* package distinct ...
   ** using staged installation
   ** libs
-  using C compiler: x86_64-conda-linux-gnu-c (conda-forge gcc 12.3.0-0) 12.3.0
-  using C17
-  During startup - Warning message:
-  Setting LC_TIME failed, using "C"
-  x86_64-conda-linux-gnu-c -std=gnu17 -I"$PREFIX/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'$PREFIX/lib/R/library/Rcpp/include' -I'$PREFIX/lib/R/library/BH/include' -I'$PREFIX/lib/R/library/Rhtslib/include' -I'$PREFIX/lib/R/library/zlibbioc/include' -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -I$PREFIX/include -Wl,-rpath-link,$PREFIX/lib    -fpic  -fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=/home/conda/feedstock_root/build_artifacts/r-base-split_1689262856403/work=/usr/local/src/conda/r-base-4.3.1 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix  -c RcppExports.cpp -o RcppExports.o
-  During startup - Warning message:
-  Setting LC_TIME failed, using "C"
-  x86_64-conda-linux-gnu-c -std=gnu17 -I"$PREFIX/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'$PREFIX/lib/R/library/Rcpp/include' -I'$PREFIX/lib/R/library/BH/include' -I'$PREFIX/lib/R/library/Rhtslib/include' -I'$PREFIX/lib/R/library/zlibbioc/include' -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -I$PREFIX/include -Wl,-rpath-link,$PREFIX/lib    -fpic  -fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=/home/conda/feedstock_root/build_artifacts/r-base-split_1689262856403/work=/usr/local/src/conda/r-base-4.3.1 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix  -c rcpp_cx_report.cpp -o rcpp_cx_report.o
-  During startup - Warning message:
-  Setting LC_TIME failed, using "C"
-  x86_64-conda-linux-gnu-c -std=gnu17 -I"$PREFIX/lib/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'$PREFIX/lib/R/library/Rcpp/include' -I'$PREFIX/lib/R/library/BH/include' -I'$PREFIX/lib/R/library/Rhtslib/include' -I'$PREFIX/lib/R/library/zlibbioc/include' -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -I$PREFIX/include -Wl,-rpath-link,$PREFIX/lib    -fpic  -fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=/home/conda/feedstock_root/build_artifacts/r-base-split_1689262856403/work=/usr/local/src/conda/r-base-4.3.1 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix  -c rcpp_extract_patterns.cpp -o rcpp_extract_patterns.o
-  rcpp_extract_patterns.cpp: In function 'Rcpp::DataFrame rcpp_extract_patterns(Rcpp::DataFrame&, unsigned int, unsigned int, unsigned int, int, std::string&, double, bool, unsigned int, Rcpp::IntegerVector&)':
-  rcpp_extract_patterns.cpp:182:39: error: expected ')' before 'PRIx64'
-    182 |           snprintf(fnv_str, 17, "%.16" PRIx64, fnv);
-        |                   ~                   ^~~~~~~
-        |                                       )
-  rcpp_extract_patterns.cpp:4:1: note: 'PRIx64' is defined in header '<cinttypes>'; did you forget to '#include <cinttypes>'?
-      3 | #include <cinttypes>
-     |#include <cinttypes>
-      4 |
-  make: *** [/opt/conda/conda-bld/bioconductor-epialleler_1689837647931/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/R/etc/Makeconf:200: rcpp_extract_patterns.o] Error 1
-  ERROR: compilation failed for package epialleleR
-  * removing /opt/conda/conda-bld/bioconductor-epialleler_1689837647931/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/R/library/epialleleR
+  using C compiler: x86_64-conda-linux-gnu-c (conda-forge gcc 12.3.0-3) 12.3.0
+  using C11
+  $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c -std=gnu11 -I"$PREFIX/lib/R/include" -DNDEBUG  -I'$PREFIX/lib/R/library/Rcpp/include' -I'$PREFIX/lib/R/library/RcppArmadillo/include' -I'$PREFIX/lib/R/library/Rfast/include' -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -I$PREFIX/include -Wl,-rpath-link,$PREFIX/lib    -fpic  -fvisibility-inlines-hidden  -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=/home/conda/feedstock_root/build_artifacts/r-base-split_1700316003380/work=/usr/local/src/conda/r-base-4.3.2 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix  -c Perm.cpp -o Perm.o
+  $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c -std=gnu11 -I"$PREFIX/lib/R/include" -DNDEBUG  -I'$PREFIX/lib/R/library/Rcpp/include' -I'$PREFIX/lib/R/library/RcppArmadillo/include' -I'$PREFIX/lib/R/library/Rfast/include' -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -I$PREFIX/include -Wl,-rpath-link,$PREFIX/lib    -fpic  -fvisibility-inlines-hidden  -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=/home/conda/feedstock_root/build_artifacts/r-base-split_1700316003380/work=/usr/local/src/conda/r-base-4.3.2 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix  -c Perm_covariates.cpp -o Perm_covariates.o
+  In file included from /opt/conda/conda-bld/bioconductor-distinct_1703301470415/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/R/library/Rfast/include/Rfast/templates.h:10,
+                   from /opt/conda/conda-bld/bioconductor-distinct_1703301470415/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/R/library/Rfast/include/Rfast/matrix.hpp:14,
+                   from /opt/conda/conda-bld/bioconductor-distinct_1703301470415/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/R/library/Rfast/include/Rfast.h:5,
+                   from Perm_covariates.cpp:2:
+  /opt/conda/conda-bld/bioconductor-distinct_1703301470415/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/R/library/Rfast/include/Rfast/parallel.h:7:10: fatal error: RcppParallel.h: No such file or directory
+      7 | #include <RcppParallel.h>
+        |          ^~~~~~~~~~~~~~~~
+  compilation terminated.
+  make: *** [/opt/conda/conda-bld/bioconductor-distinct_1703301470415/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/R/etc/Makeconf:200: Perm_covariates.o] Error 1
+  ERROR: compilation failed for package distinct
+  * removing /opt/conda/conda-bld/bioconductor-distinct_1703301470415/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/R/library/distinct
   Traceback (most recent call last):
     File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
       sys.exit(main())
@@ -100,5 +102,5 @@ log: |-
       return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
     File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
       raise subprocess.CalledProcessError(proc.returncode, _args)
-  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/bioconductor-epialleler_1689837647931/work/conda_build.sh']' returned non-zero exit status 1.
+  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/bioconductor-distinct_1703301470415/work/conda_build.sh']' returned non-zero exit status 1.
 # Last 100 lines of the build log.
diff --git a/recipes/bioconductor-distinct/build_failure.osx-64.yaml b/recipes/bioconductor-distinct/build_failure.osx-64.yaml
new file mode 100644
index 0000000000000..be50a664177f3
--- /dev/null
+++ b/recipes/bioconductor-distinct/build_failure.osx-64.yaml
@@ -0,0 +1,38 @@
+recipe_sha: 4cdee96b11c599d7d86852005b1fcdb8fc168a77b8c4cd0973697dbfc2af519f  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+reason: |-
+  parallel.h:7:10: fatal error: 'RcppParallel.h' file not found
+category: |-
+  compiler error
+log: |-
+  12:17:08 BIOCONDA INFO (ERR) In file included from Perm_covariates.cpp:2:
+  12:17:08 BIOCONDA INFO (ERR) In file included from /opt/mambaforge/envs/bioconda/conda-bld/bioconductor-distinct_1702469402679/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/R/library/Rfast/include/Rfast.h:5:
+  12:17:08 BIOCONDA INFO (ERR) In file included from /opt/mambaforge/envs/bioconda/conda-bld/bioconductor-distinct_1702469402679/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/R/library/Rfast/include/Rfast/matrix.hpp:14:
+  12:17:08 BIOCONDA INFO (ERR) In file included from /opt/mambaforge/envs/bioconda/conda-bld/bioconductor-distinct_1702469402679/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/R/library/Rfast/include/Rfast/templates.h:10:
+  12:17:08 BIOCONDA INFO (ERR) /opt/mambaforge/envs/bioconda/conda-bld/bioconductor-distinct_1702469402679/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/R/library/Rfast/include/Rfast/parallel.h:7:10: fatal error: 'RcppParallel.h' file not found
+  12:17:08 BIOCONDA INFO (ERR) #include <RcppParallel.h>
+  12:17:08 BIOCONDA INFO (ERR)          ^~~~~~~~~~~~~~~~
+  12:17:08 BIOCONDA INFO (ERR) 1 error generated. 
+  12:17:08 BIOCONDA INFO (ERR) make: *** [/opt/mambaforge/envs/bioconda/conda-bld/bioconductor-distinct_1702469402679/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/R/etc/Makeconf:200: Perm_covariates.o] Error 1
+  12:17:08 BIOCONDA INFO (ERR) ERROR: compilation failed for package ‘distinct’
+  12:17:08 BIOCONDA INFO (ERR) * removing ‘/opt/mambaforge/envs/bioconda/conda-bld/bioconductor-distinct_1702469402679/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/R/library/distinct’
+  12:17:09 BIOCONDA INFO (ERR) Traceback (most recent call last):
+  12:17:09 BIOCONDA INFO (ERR)   File "/opt/mambaforge/envs/bioconda/bin/conda-mambabuild", line 10, in <module>
+  12:17:09 BIOCONDA INFO (ERR)     sys.exit(main())
+  12:17:09 BIOCONDA INFO (ERR)   File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
+  12:17:09 BIOCONDA INFO (ERR)     call_conda_build(action, config)
+  12:17:09 BIOCONDA INFO (ERR)   File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
+  12:17:09 BIOCONDA INFO (ERR)     result = api.build(
+  12:17:09 BIOCONDA INFO (ERR)   File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
+  12:17:09 BIOCONDA INFO (ERR)     return build_tree(
+  12:17:09 BIOCONDA INFO (ERR)   File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
+  12:17:09 BIOCONDA INFO (ERR)     packages_from_this = build(metadata, stats,
+  12:17:09 BIOCONDA INFO (ERR)   File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
+  12:17:09 BIOCONDA INFO (ERR)     utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
+  12:17:09 BIOCONDA INFO (ERR)   File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
+  12:17:09 BIOCONDA INFO (ERR)     return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
+  12:17:09 BIOCONDA INFO (ERR)   File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
+  12:17:09 BIOCONDA INFO (ERR)     raise subprocess.CalledProcessError(proc.returncode, _args)
+  12:17:09 BIOCONDA INFO (ERR) subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/mambaforge/envs/bioconda/conda-bld/bioconductor-distinct_1702469402679/work/conda_build.sh']' returned non-zero exit status 1.
+  12:17:18 BIOCONDA ERROR COMMAND FAILED (exited with 1): /opt/mambaforge/envs/bioconda/bin/conda mambabuild --override-channels --no-anaconda-upload -c conda-forge -c bioconda -c defaults -e /opt/mambaforge/envs/bioconda/conda_build_config.yaml -e /opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/bioconda_utils/bioconda_utils-conda_build_config.yaml recipes/bioconductor-distinct/meta.yaml
+
diff --git a/recipes/bioconductor-distinct/meta.yaml b/recipes/bioconductor-distinct/meta.yaml
index 5d70c56cc8d36..94fd0a58dc596 100644
--- a/recipes/bioconductor-distinct/meta.yaml
+++ b/recipes/bioconductor-distinct/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.2" %}
+{% set version = "1.14.0" %}
 {% set name = "distinct" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 952be7f89ed08259c89941b312132b35
+  md5: b4817384f7f8fad6e30ee01270e31d10
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-distinct", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, testthat, UpSetR, BiocStyle
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-doparallel
     - r-dorng
@@ -37,10 +38,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-doparallel
     - r-dorng
diff --git a/recipes/bioconductor-dittoseq/meta.yaml b/recipes/bioconductor-dittoseq/meta.yaml
index da1c9a0e79891..2c331373afe40 100644
--- a/recipes/bioconductor-dittoseq/meta.yaml
+++ b/recipes/bioconductor-dittoseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "dittoSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7b2089286b90a1e519b82194f205784c
+  md5: 6d7e63c0018a57726033bb5862dccf7e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dittoseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: plotly, testthat, Seurat (>= 2.2), DESeq2, edgeR, ggplot.multistats, knitr, rmarkdown, BiocStyle, scRNAseq, ggrastr (>= 0.2.0), ComplexHeatmap, bluster, scater, scran
 requirements:
   host:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-colorspace >=1.4'
     - r-cowplot
@@ -34,9 +35,9 @@ requirements:
     - r-pheatmap
     - r-reshape2
   run:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-colorspace >=1.4'
     - r-cowplot
diff --git a/recipes/bioconductor-divergence/meta.yaml b/recipes/bioconductor-divergence/meta.yaml
index 8405572604541..a322557c552a1 100644
--- a/recipes/bioconductor-divergence/meta.yaml
+++ b/recipes/bioconductor-divergence/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "divergence" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 0d386fade56d1aefb877693d2d468aca
+  md5: 0ead0047c69549361f0f86d7207aee2b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-divergence", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-dks/meta.yaml b/recipes/bioconductor-dks/meta.yaml
index 54475c9ca8d0f..ea476c6b5f0f4 100644
--- a/recipes/bioconductor-dks/meta.yaml
+++ b/recipes/bioconductor-dks/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "dks" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: bda53a4f0f6a746a4f0ade7ecbc9d728
+  md5: f15cb2d88222e2936dc9460d69a924ad
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dks", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-dlbcl/meta.yaml b/recipes/bioconductor-dlbcl/meta.yaml
index 826b1990b2a5f..5324572ce48c0 100644
--- a/recipes/bioconductor-dlbcl/meta.yaml
+++ b/recipes/bioconductor-dlbcl/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.1" %}
 {% set name = "DLBCL" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f22495affaad1066fbe54791486ebd53
+  md5: a2906f8e35b0457c1cd8052d2457d40b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dlbcl", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-dlbcl/post-link.sh b/recipes/bioconductor-dlbcl/post-link.sh
index 4a3925603037e..c17921df4bc39 100644
--- a/recipes/bioconductor-dlbcl/post-link.sh
+++ b/recipes/bioconductor-dlbcl/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "dlbcl-1.40.0"
+installBiocDataPackage.sh "dlbcl-1.42.1"
diff --git a/recipes/bioconductor-dmchmm/meta.yaml b/recipes/bioconductor-dmchmm/meta.yaml
index 3fbd3d1cd7b03..440303fd576f2 100644
--- a/recipes/bioconductor-dmchmm/meta.yaml
+++ b/recipes/bioconductor-dmchmm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "DMCHMM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1bd9934bf164aae70e6b1eacadbcdae4
+  md5: 4a4e52e12df4e699e0e20d13828f25f0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dmchmm", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-calibrate
     - r-fdrtool
     - r-multcomp
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-calibrate
     - r-fdrtool
diff --git a/recipes/bioconductor-dmelsgi/meta.yaml b/recipes/bioconductor-dmelsgi/meta.yaml
index 64e1775ca9de6..6dabf001c9956 100644
--- a/recipes/bioconductor-dmelsgi/meta.yaml
+++ b/recipes/bioconductor-dmelsgi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "DmelSGI" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 611e89ab1359a4e0283b61e75205878f
+  md5: c13b3a8f881ca54d5e8ddf52ebe8b86a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dmelsgi", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, EBImage, RColorBrewer, RNAinteractMAPK, hwriter, xtable, beeswarm
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
     - r-abind
     - r-base
     - r-gplots
@@ -30,8 +31,8 @@ requirements:
     - r-knitr
     - r-tsp
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
     - r-abind
     - r-base
     - r-gplots
@@ -39,7 +40,7 @@ requirements:
     - r-knitr
     - r-tsp
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-dmelsgi/post-link.sh b/recipes/bioconductor-dmelsgi/post-link.sh
index 517c5d22c9e6c..9666ced12ef5f 100644
--- a/recipes/bioconductor-dmelsgi/post-link.sh
+++ b/recipes/bioconductor-dmelsgi/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "dmelsgi-1.32.0"
+installBiocDataPackage.sh "dmelsgi-1.34.0"
diff --git a/recipes/bioconductor-dmrcaller/meta.yaml b/recipes/bioconductor-dmrcaller/meta.yaml
index 334e3141ab264..a58fdd462be2d 100644
--- a/recipes/bioconductor-dmrcaller/meta.yaml
+++ b/recipes/bioconductor-dmrcaller/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "DMRcaller" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 721451b67d2e53e1d2a76142208c18cb
+  md5: 1c5b37620b4950eb63e32c3063235e8e
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dmrcaller", max_pin="x.x") }}'
 # Suggests: knitr, RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-betareg
     - r-rcpp
@@ -30,9 +31,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-betareg
     - r-rcpp
@@ -45,8 +46,14 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-3
+  license: GPL-3.0-only
   summary: 'Differentially Methylated Regions caller'
   description: 'Uses Bisulfite sequencing data in two conditions and identifies differentially methylated regions between the conditions in CG and non-CG context. The input is the CX report files produced by Bismark and the output is a list of DMRs stored as GRanges objects.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
+
diff --git a/recipes/bioconductor-dmrcatedata/meta.yaml b/recipes/bioconductor-dmrcatedata/meta.yaml
index cff320dcd2e33..06d80da935efd 100644
--- a/recipes/bioconductor-dmrcatedata/meta.yaml
+++ b/recipes/bioconductor-dmrcatedata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.18.0" %}
+{% set version = "2.20.0" %}
 {% set name = "DMRcatedata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,37 +11,38 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c2d0addb7984dadb9a3c0012dcd8c719
+  md5: ac938c6259121c4a60ca3c8c5bfdf724
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dmrcatedata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
     - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19 >=0.6.0,<0.7.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-plyr
     - r-readxl
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
     - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19 >=0.6.0,<0.7.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-plyr
     - r-readxl
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-dmrcatedata/post-link.sh b/recipes/bioconductor-dmrcatedata/post-link.sh
index eabb638ec0fc9..d4ad6b968cb0a 100644
--- a/recipes/bioconductor-dmrcatedata/post-link.sh
+++ b/recipes/bioconductor-dmrcatedata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "dmrcatedata-2.18.0"
+installBiocDataPackage.sh "dmrcatedata-2.20.0"
diff --git a/recipes/bioconductor-dmrscan/meta.yaml b/recipes/bioconductor-dmrscan/meta.yaml
index 53143408153e9..0b03fd4a53375 100644
--- a/recipes/bioconductor-dmrscan/meta.yaml
+++ b/recipes/bioconductor-dmrscan/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "DMRScan" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e05e55e05878903f9d35e30c7bbf3a37
+  md5: 698b81baf921ef394adedb8d8ff7ba7f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dmrscan", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, BiocManager
 requirements:
   host:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-mass
     - r-matrix
     - r-mvtnorm
     - r-rcpproll
   run:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-mass
     - r-matrix
diff --git a/recipes/bioconductor-dmrseq/meta.yaml b/recipes/bioconductor-dmrseq/meta.yaml
index efaa67d94c3ec..505c49b1d0fb8 100644
--- a/recipes/bioconductor-dmrseq/meta.yaml
+++ b/recipes/bioconductor-dmrseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "dmrseq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 30fbe6664a5ed95ed8cd32e6726fd218
+  md5: a8181423ea50609ae16545b9f8bb1895
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dmrseq", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr, rmarkdown, BiocStyle
+# Suggests: knitr, rmarkdown, BiocStyle, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-annotatr >=1.26.0,<1.27.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-bsseq >=1.36.0,<1.37.0'
-    - 'bioconductor-bumphunter >=1.42.0,<1.43.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-annotatr >=1.28.0,<1.29.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-bsseq >=1.38.0,<1.39.0'
+    - 'bioconductor-bumphunter >=1.44.0,<1.45.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - r-locfit
@@ -40,17 +41,17 @@ requirements:
     - r-outliers
     - r-rcolorbrewer
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-annotatr >=1.26.0,<1.27.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-bsseq >=1.36.0,<1.37.0'
-    - 'bioconductor-bumphunter >=1.42.0,<1.43.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-annotatr >=1.28.0,<1.29.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-bsseq >=1.38.0,<1.39.0'
+    - 'bioconductor-bumphunter >=1.44.0,<1.45.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - r-locfit
diff --git a/recipes/bioconductor-dnabarcodecompatibility/meta.yaml b/recipes/bioconductor-dnabarcodecompatibility/meta.yaml
index d8cb8b9e6de09..bc74f779dfa5a 100644
--- a/recipes/bioconductor-dnabarcodecompatibility/meta.yaml
+++ b/recipes/bioconductor-dnabarcodecompatibility/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "DNABarcodeCompatibility" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 481a9ea651c4ff63152c214b3250677e
+  md5: b1e2988c254cf089a2f887abf139b7bf
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dnabarcodecompatibility", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, testthat
 requirements:
   host:
-    - 'bioconductor-dnabarcodes >=1.30.0,<1.31.0'
+    - 'bioconductor-dnabarcodes >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-numbers
@@ -29,7 +30,7 @@ requirements:
     - r-stringr
     - r-tidyr
   run:
-    - 'bioconductor-dnabarcodes >=1.30.0,<1.31.0'
+    - 'bioconductor-dnabarcodes >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-numbers
diff --git a/recipes/bioconductor-dnabarcodes/meta.yaml b/recipes/bioconductor-dnabarcodes/meta.yaml
index bb47078fe041c..53c9caad94d27 100644
--- a/recipes/bioconductor-dnabarcodes/meta.yaml
+++ b/recipes/bioconductor-dnabarcodes/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "DNABarcodes" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7922c9dbc0b216fca9de9a18afef465a
+  md5: 6047e393e89e644fbf9aa4aa5a9faa64
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dnabarcodes", max_pin="x.x") }}'
 # Suggests: knitr, BiocStyle, rmarkdown
 requirements:
   host:
diff --git a/recipes/bioconductor-dnacopy/meta.yaml b/recipes/bioconductor-dnacopy/meta.yaml
index f788a79e19267..f189045b214b5 100644
--- a/recipes/bioconductor-dnacopy/meta.yaml
+++ b/recipes/bioconductor-dnacopy/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.74.1" %}
+{% set version = "1.76.0" %}
 {% set name = "DNAcopy" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 41ab8f2ec3f9ee0a4b63eb57e97cdeef
+  md5: 1b80859f79a39def302664f11b91a98f
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dnacopy", max_pin="x.x") }}'
 requirements:
   host:
     - r-base
@@ -34,10 +35,12 @@ test:
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: 'GPL (>= 2)'
-  summary: 'DNA copy number data analysis'
+  summary: 'DNA Copy Number Data Analysis'
   description: 'Implements the circular binary segmentation (CBS) algorithm to segment DNA copy number data and identify genomic regions with abnormal copy number.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:dnacopy
     - doi:10.1038/nmeth.3252
diff --git a/recipes/bioconductor-dnafusion/meta.yaml b/recipes/bioconductor-dnafusion/meta.yaml
index 38aeb1d4e0dcc..03be682d7e794 100644
--- a/recipes/bioconductor-dnafusion/meta.yaml
+++ b/recipes/bioconductor-dnafusion/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "DNAfusion" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,38 +11,39 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: edd9b9e868337162ddb38fa5eca32876
+  md5: b7ef2bb10bea5334d6d159208c284c16
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dnafusion", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, sessioninfo, BiocStyle
 requirements:
   host:
-    - 'bioconductor-bamsignals >=1.32.0,<1.33.0'
-    - 'bioconductor-biocbaseutils >=1.2.0,<1.3.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.17.0,<3.18.0'
+    - 'bioconductor-bamsignals >=1.34.0,<1.35.0'
+    - 'bioconductor-biocbaseutils >=1.4.0,<1.5.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-bamsignals >=1.32.0,<1.33.0'
-    - 'bioconductor-biocbaseutils >=1.2.0,<1.3.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.17.0,<3.18.0'
+    - 'bioconductor-bamsignals >=1.34.0,<1.35.0'
+    - 'bioconductor-biocbaseutils >=1.4.0,<1.5.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.18.0,<3.19.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-dnashaper/meta.yaml b/recipes/bioconductor-dnashaper/meta.yaml
index 05df265da888d..06c57e6991e97 100644
--- a/recipes/bioconductor-dnashaper/meta.yaml
+++ b/recipes/bioconductor-dnashaper/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "DNAshapeR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 92308b5f9b7b9ed27d5663313d92f2a2
+  md5: f2b90849d52bce75d88a4970f08c2544
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dnashaper", max_pin="x.x") }}'
 # Suggests: AnnotationHub, knitr, rmarkdown, testthat, BSgenome.Scerevisiae.UCSC.sacCer3, BSgenome.Hsapiens.UCSC.hg19, caret
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-fields
     - 'r-rcpp >=0.12.1'
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-fields
     - 'r-rcpp >=0.12.1'
diff --git a/recipes/bioconductor-dnazoodata/meta.yaml b/recipes/bioconductor-dnazoodata/meta.yaml
index 07a9c8399ec46..6ac0f55444cfb 100644
--- a/recipes/bioconductor-dnazoodata/meta.yaml
+++ b/recipes/bioconductor-dnazoodata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "DNAZooData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 76d7687720d175ca13a1057c22b68b1e
+  md5: 06c4b9dbbaddc3dd4dcdc51e34150aa7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dnazoodata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: dplyr, testthat, methods, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-hicexperiment >=1.0.0,<1.1.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-hicexperiment >=1.2.0,<1.3.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-rjson
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-hicexperiment >=1.0.0,<1.1.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-hicexperiment >=1.2.0,<1.3.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-rjson
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-dnazoodata/post-link.sh b/recipes/bioconductor-dnazoodata/post-link.sh
index 99f71e297f7d8..34b10c2512e29 100644
--- a/recipes/bioconductor-dnazoodata/post-link.sh
+++ b/recipes/bioconductor-dnazoodata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "dnazoodata-1.0.0"
+installBiocDataPackage.sh "dnazoodata-1.2.0"
diff --git a/recipes/bioconductor-do.db/meta.yaml b/recipes/bioconductor-do.db/meta.yaml
index b8fcca5ca4089..5c3b17b44eba8 100644
--- a/recipes/bioconductor-do.db/meta.yaml
+++ b/recipes/bioconductor-do.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.9" %}
 {% set name = "DO.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 63dda6d46d2fe40c52a2e79260a7fb9d
 build:
-  number: 15
+  number: 16
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-do.db", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-dominoeffect/meta.yaml b/recipes/bioconductor-dominoeffect/meta.yaml
index 71dd0a84aba94..eb625150b9ecb 100644
--- a/recipes/bioconductor-dominoeffect/meta.yaml
+++ b/recipes/bioconductor-dominoeffect/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.1" %}
+{% set version = "1.22.0" %}
 {% set name = "DominoEffect" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f620b081e95046b62ef0c8f9081f26e3
+  md5: 2e92d099e31b5feaf035b8eb5ad92376
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dominoeffect", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-data.table
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-data.table
 test:
diff --git a/recipes/bioconductor-donapllp2013/meta.yaml b/recipes/bioconductor-donapllp2013/meta.yaml
index e2e5d42e94204..abdd5e739d806 100644
--- a/recipes/bioconductor-donapllp2013/meta.yaml
+++ b/recipes/bioconductor-donapllp2013/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "DonaPLLP2013" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1ef96235e9049d31e27f5e5fff17d1ec
+  md5: d8dc37afefc52856d520540b07faf545
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-donapllp2013", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
     - r-base
   run:
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-donapllp2013/post-link.sh b/recipes/bioconductor-donapllp2013/post-link.sh
index 091fa30e9113d..5921a0116e213 100644
--- a/recipes/bioconductor-donapllp2013/post-link.sh
+++ b/recipes/bioconductor-donapllp2013/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "donapllp2013-1.38.0"
+installBiocDataPackage.sh "donapllp2013-1.40.0"
diff --git a/recipes/bioconductor-doppelgangr/meta.yaml b/recipes/bioconductor-doppelgangr/meta.yaml
index fa878f48b7983..8038472db593b 100644
--- a/recipes/bioconductor-doppelgangr/meta.yaml
+++ b/recipes/bioconductor-doppelgangr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.1" %}
+{% set version = "1.30.0" %}
 {% set name = "doppelgangR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 294c75b10f9555eca7ba92b5d903c3b0
+  md5: c50eff7bb5871b545a8199a9b1c4667b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-doppelgangr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, curatedOvarianData, testthat
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-digest
     - r-mnormt
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-digest
     - r-mnormt
diff --git a/recipes/bioconductor-dorothea/meta.yaml b/recipes/bioconductor-dorothea/meta.yaml
index 827105752b8d7..e6eda607d7e68 100644
--- a/recipes/bioconductor-dorothea/meta.yaml
+++ b/recipes/bioconductor-dorothea/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "dorothea" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 068a6de9744d9d5c7085dfe910968e17
+  md5: d1ad1213db5d54f1fc6ef8d195b9bbc0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dorothea", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biobase, BiocStyle, OmnipathR, viper, knitr, pheatmap, pkgdown, rmarkdown, Seurat, SingleCellExperiment, SummarizedExperiment, testthat (>= 2.1.0), tibble, tidyr, utils
 requirements:
   host:
-    - 'bioconductor-bcellviper >=1.36.0,<1.37.0'
-    - 'bioconductor-decoupler >=2.6.0,<2.7.0'
+    - 'bioconductor-bcellviper >=1.38.0,<1.39.0'
+    - 'bioconductor-decoupler >=2.8.0,<2.9.0'
     - r-base
     - r-dplyr
     - r-magrittr
   run:
-    - 'bioconductor-bcellviper >=1.36.0,<1.37.0'
-    - 'bioconductor-decoupler >=2.6.0,<2.7.0'
+    - 'bioconductor-bcellviper >=1.38.0,<1.39.0'
+    - 'bioconductor-decoupler >=2.8.0,<2.9.0'
     - r-base
     - r-dplyr
     - r-magrittr
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-dorothea/post-link.sh b/recipes/bioconductor-dorothea/post-link.sh
index ed11f25157cc9..b77af7c38dc2e 100644
--- a/recipes/bioconductor-dorothea/post-link.sh
+++ b/recipes/bioconductor-dorothea/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "dorothea-1.12.0"
+installBiocDataPackage.sh "dorothea-1.14.0"
diff --git a/recipes/bioconductor-doscheda/meta.yaml b/recipes/bioconductor-doscheda/meta.yaml
index 4b32f2f293aaf..896c4140c8007 100644
--- a/recipes/bioconductor-doscheda/meta.yaml
+++ b/recipes/bioconductor-doscheda/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "Doscheda" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8fc89a023bcd59d4fabf8d485b7826d1
+  md5: 3eee0480f798b00860daaf2cb88325ca
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-doscheda", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-base
     - r-calibrate
     - r-corrgram
@@ -41,9 +42,9 @@ requirements:
     - r-shinydashboard
     - r-stringr
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-base
     - r-calibrate
     - r-corrgram
diff --git a/recipes/bioconductor-dose/meta.yaml b/recipes/bioconductor-dose/meta.yaml
index 2598bc88fb879..0d10dde0a81d3 100644
--- a/recipes/bioconductor-dose/meta.yaml
+++ b/recipes/bioconductor-dose/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.26.1" %}
+{% set version = "3.28.1" %}
 {% set name = "DOSE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,38 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1dad84a44c7ce259b0538d452cb7aaf9
+  md5: 11096edb2862c8a442f53435082e40b6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dose", max_pin="x.x") }}'
   noarch: generic
-# Suggests: prettydoc, clusterProfiler, gson (>= 0.0.5), knitr, rmarkdown, org.Hs.eg.db, testthat
+# Suggests: prettydoc, clusterProfiler, gson (>= 0.0.5), knitr, rmarkdown, org.Hs.eg.db, MPO.db, HPO.db, testthat
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-gosemsim >=2.26.0,<2.27.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-gosemsim >=2.28.0,<2.29.0'
     - 'bioconductor-hdo.db >=0.99.0,<0.100.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
     - r-ggplot2
     - r-reshape2
+    - r-yulab.utils
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-gosemsim >=2.26.0,<2.27.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-gosemsim >=2.28.0,<2.29.0'
     - 'bioconductor-hdo.db >=0.99.0,<0.100.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
     - r-ggplot2
     - r-reshape2
+    - r-yulab.utils
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-doser/meta.yaml b/recipes/bioconductor-doser/meta.yaml
index 9e43fae39943c..7b6a6fdc3f312 100644
--- a/recipes/bioconductor-doser/meta.yaml
+++ b/recipes/bioconductor-doser/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "doseR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 23b8b183287c77bfae54e16a488988d8
+  md5: 20251942acb7343859507c138bc2b902
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-doser", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-digest
     - r-lme4
@@ -31,9 +32,9 @@ requirements:
     - r-mclust
     - r-runit
   run:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-digest
     - r-lme4
diff --git a/recipes/bioconductor-doubletrouble/meta.yaml b/recipes/bioconductor-doubletrouble/meta.yaml
index 7536d4a2b14e1..a6b8eb760d0b6 100644
--- a/recipes/bioconductor-doubletrouble/meta.yaml
+++ b/recipes/bioconductor-doubletrouble/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.1" %}
 {% set name = "doubletrouble" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,38 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 3900ef117b25b1aad217a9953deb4a46
+  md5: e494ee8650e6c8a13c7149c68683bea8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-doubletrouble", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 3.0.0), knitr, feature, BiocStyle, rmarkdown, covr, sessioninfo
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-msa2dist >=1.4.0,<1.5.0'
-    - 'bioconductor-syntenet >=1.2.0,<1.3.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-msa2dist >=1.6.0,<1.7.0'
+    - 'bioconductor-syntenet >=1.4.0,<1.5.0'
     - r-base
     - r-ggplot2
     - r-mclust
+    - r-rlang
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-msa2dist >=1.4.0,<1.5.0'
-    - 'bioconductor-syntenet >=1.2.0,<1.3.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-msa2dist >=1.6.0,<1.7.0'
+    - 'bioconductor-syntenet >=1.4.0,<1.5.0'
     - r-base
     - r-ggplot2
     - r-mclust
+    - r-rlang
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
@@ -43,6 +50,6 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: GPL-3
   summary: 'Identification and classification of duplicated genes'
-  description: 'doubletrouble aims to identify duplicated genes from whole-genome protein sequences and classify them based on their modes of duplication. The duplication modes are: i. whole-genome duplication (WGD); ii. tandem duplication (TD); iii. proximal duplication (PD); iv. transposed duplication (TRD) and; v. dispersed duplication (DD). If users want a simpler classification scheme, duplicates can also be classified into WGD- and SSD-derived (small-scale duplication) gene pairs. Besides classifying gene pairs, users can also classify genes, so that each gene is assigned a unique mode of duplication. Users can also calculate substitution rates per substitution site (i.e., Ka and Ks) from duplicate pairs, find peaks in Ks distributions with Gaussian Mixture Models (GMMs), and classify gene pairs into age groups based on Ks peaks.'
+  description: 'doubletrouble aims to identify duplicated genes from whole-genome protein sequences and classify them based on their modes of duplication. The duplication modes are i. segmental duplication (SD); ii. tandem duplication (TD); iii. proximal duplication (PD); iv. transposed duplication (TRD) and; v. dispersed duplication (DD). Transposon-derived duplicates (TRD) can be further subdivided into rTRD (retrotransposon-derived duplication) and dTRD (DNA transposon-derived duplication). If users want a simpler classification scheme, duplicates can also be classified into SD- and SSD-derived (small-scale duplication) gene pairs. Besides classifying gene pairs, users can also classify genes, so that each gene is assigned a unique mode of duplication. Users can also calculate substitution rates per substitution site (i.e., Ka and Ks) from duplicate pairs, find peaks in Ks distributions with Gaussian Mixture Models (GMMs), and classify gene pairs into age groups based on Ks peaks.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
diff --git a/recipes/bioconductor-drawproteins/meta.yaml b/recipes/bioconductor-drawproteins/meta.yaml
index cb3cac5120abe..54bccf2331977 100644
--- a/recipes/bioconductor-drawproteins/meta.yaml
+++ b/recipes/bioconductor-drawproteins/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "drawProteins" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 309e0805cb162bc9e22e8ad73dd775a9
+  md5: 67cbf634b37851946e9cc3885cdda6c5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-drawproteins", max_pin="x.x") }}'
   noarch: generic
 # Suggests: covr, testthat, knitr, rmarkdown, BiocStyle
 requirements:
diff --git a/recipes/bioconductor-dreamlet/build.sh b/recipes/bioconductor-dreamlet/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-dreamlet/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-dreamlet/build_failure.linux-64.yaml b/recipes/bioconductor-dreamlet/build_failure.linux-64.yaml
new file mode 100644
index 0000000000000..0e452d24e3b59
--- /dev/null
+++ b/recipes/bioconductor-dreamlet/build_failure.linux-64.yaml
@@ -0,0 +1,6 @@
+recipe_sha: 9267c92fbfbee2b151933e110f05e516a8f84863f222f244128a2f63b327fcf7  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+reason: |-
+  nothing provides requested r-mashr >=0.2.52
+category: |-
+  dependency issue
diff --git a/recipes/bioconductor-dreamlet/build_failure.osx-64.yaml b/recipes/bioconductor-dreamlet/build_failure.osx-64.yaml
new file mode 100644
index 0000000000000..0e452d24e3b59
--- /dev/null
+++ b/recipes/bioconductor-dreamlet/build_failure.osx-64.yaml
@@ -0,0 +1,6 @@
+recipe_sha: 9267c92fbfbee2b151933e110f05e516a8f84863f222f244128a2f63b327fcf7  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+reason: |-
+  nothing provides requested r-mashr >=0.2.52
+category: |-
+  dependency issue
diff --git a/recipes/bioconductor-dreamlet/meta.yaml b/recipes/bioconductor-dreamlet/meta.yaml
new file mode 100644
index 0000000000000..14eba535c39a1
--- /dev/null
+++ b/recipes/bioconductor-dreamlet/meta.yaml
@@ -0,0 +1,106 @@
+{% set version = "1.0.0" %}
+{% set name = "dreamlet" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
+  md5: 34ea1ec9e44c635699ed9cf8deed29cd
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dreamlet", max_pin="x.x") }}'
+# Suggests: BiocStyle, knitr, pander, rmarkdown, muscat, ExperimentHub, RUnit, scater, scuttle
+# SystemRequirements: C++11
+requirements:
+  host:
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-sparsematrixstats >=1.14.0,<1.15.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variancepartition >=1.32.0,<1.33.0'
+    - 'bioconductor-zenith >=1.4.0,<1.5.0'
+    - r-ashr
+    - r-base
+    - r-data.table
+    - r-dplyr
+    - r-ggplot2
+    - r-ggrepel
+    - r-gtools
+    - 'r-lme4 >=1.1-33'
+    - 'r-mashr >=0.2.52'
+    - r-mass
+    - r-matrix
+    - r-purrr
+    - r-rcpp
+    - r-rdpack
+    - r-reshape2
+    - r-scattermore
+    - r-tidyr
+    - libblas
+    - liblapack
+  run:
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-sparsematrixstats >=1.14.0,<1.15.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variancepartition >=1.32.0,<1.33.0'
+    - 'bioconductor-zenith >=1.4.0,<1.5.0'
+    - r-ashr
+    - r-base
+    - r-data.table
+    - r-dplyr
+    - r-ggplot2
+    - r-ggrepel
+    - r-gtools
+    - 'r-lme4 >=1.1-33'
+    - 'r-mashr >=0.2.52'
+    - r-mass
+    - r-matrix
+    - r-purrr
+    - r-rcpp
+    - r-rdpack
+    - r-reshape2
+    - r-scattermore
+    - r-tidyr
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - make
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'Cohort-scale differential expression analysis of single cell data using linear (mixed) models'
+  description: 'Recent advances in single cell/nucleus transcriptomic technology has enabled collection of cohort-scale datasets to study cell type specific gene expression differences associated disease state, stimulus, and genetic regulation. The scale of these data, complex study designs, and low read count per cell mean that characterizing cell type specific molecular mechanisms requires a user-frieldly, purpose-build analytical framework. We have developed the dreamlet package that applies a pseudobulk approach and fits a regression model for each gene and cell cluster to test differential expression across individuals associated with a trait of interest. Use of precision-weighted linear mixed models enables accounting for repeated measures study designs, high dimensional batch effects, and varying sequencing depth or observed cells per biosample.'
+
diff --git a/recipes/bioconductor-dresscheck/meta.yaml b/recipes/bioconductor-dresscheck/meta.yaml
index 9f7499d0e8bbb..5c21bedf99cda 100644
--- a/recipes/bioconductor-dresscheck/meta.yaml
+++ b/recipes/bioconductor-dresscheck/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.38.0" %}
+{% set version = "0.40.0" %}
 {% set name = "dressCheck" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 27fc1d1485335601b86ab54b8380f1dc
+  md5: d6fb25eaad39c714024ed855c8c9c87d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dresscheck", max_pin="x.x") }}'
   noarch: generic
 # Suggests: survival, chron
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-dresscheck/post-link.sh b/recipes/bioconductor-dresscheck/post-link.sh
index 6bb9b9ee996f5..307a736efcaa5 100644
--- a/recipes/bioconductor-dresscheck/post-link.sh
+++ b/recipes/bioconductor-dresscheck/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "dresscheck-0.38.0"
+installBiocDataPackage.sh "dresscheck-0.40.0"
diff --git a/recipes/bioconductor-drimseq/meta.yaml b/recipes/bioconductor-drimseq/meta.yaml
index 036fb1329f664..0900c40f993b6 100644
--- a/recipes/bioconductor-drimseq/meta.yaml
+++ b/recipes/bioconductor-drimseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "DRIMSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7145a27da005c65bda5885bf2de31976
+  md5: fae7a1b0945b2942ef3f633d68a74fd2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-drimseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: PasillaTranscriptExpr, GeuvadisTranscriptExpr, grid, BiocStyle, knitr, testthat
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - r-mass
     - r-reshape2
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - r-mass
diff --git a/recipes/bioconductor-drivernet/meta.yaml b/recipes/bioconductor-drivernet/meta.yaml
index aa29c546732e6..6b233cd48cc6b 100644
--- a/recipes/bioconductor-drivernet/meta.yaml
+++ b/recipes/bioconductor-drivernet/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "DriverNet" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c9d229b232a5ee18771af476f9477584
+  md5: 78b923b016f6bd8097c1edc43ca0cca4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-drivernet", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-droplettestfiles/meta.yaml b/recipes/bioconductor-droplettestfiles/meta.yaml
index daca202c76a27..505870f109933 100644
--- a/recipes/bioconductor-droplettestfiles/meta.yaml
+++ b/recipes/bioconductor-droplettestfiles/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "DropletTestFiles" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: addd41a9a235a4216b4c7067879203d6
+  md5: 5a3a3f0d0901c90c6a2b173b976c4868
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-droplettestfiles", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, DropletUtils
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-droplettestfiles/post-link.sh b/recipes/bioconductor-droplettestfiles/post-link.sh
index 0d1ccdac66b6c..968fbe466a2dc 100644
--- a/recipes/bioconductor-droplettestfiles/post-link.sh
+++ b/recipes/bioconductor-droplettestfiles/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "droplettestfiles-1.10.0"
+installBiocDataPackage.sh "droplettestfiles-1.12.0"
diff --git a/recipes/bioconductor-dropletutils/meta.yaml b/recipes/bioconductor-dropletutils/meta.yaml
index 063be886c2025..211af9c8e5c59 100644
--- a/recipes/bioconductor-dropletutils/meta.yaml
+++ b/recipes/bioconductor-dropletutils/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "DropletUtils" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0633d05d7dde6fe7e7c28eba4c5862db
+  md5: f1fe907e6269e652adc4607fdb335c41
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dropletutils", max_pin="x.x") }}'
 # Suggests: testthat, knitr, BiocStyle, rmarkdown, jsonlite, DropletTestFiles
 # SystemRequirements: C++11, GNU make
 requirements:
   host:
-    - 'bioconductor-beachmat >=2.16.0,<2.17.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bh
     - r-dqrng
@@ -45,21 +46,21 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-beachmat >=2.16.0,<2.17.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bh
     - r-dqrng
diff --git a/recipes/bioconductor-drosgenome1.db/meta.yaml b/recipes/bioconductor-drosgenome1.db/meta.yaml
index 99ab030ba9492..8fc4379c2d8c6 100644
--- a/recipes/bioconductor-drosgenome1.db/meta.yaml
+++ b/recipes/bioconductor-drosgenome1.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "drosgenome1.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 6432e2ae22cf58524278a559097bdf3a
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-drosgenome1.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.dm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.dm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.dm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.dm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-drosgenome1cdf/meta.yaml b/recipes/bioconductor-drosgenome1cdf/meta.yaml
index 240ef113c68af..a6ce8e5c2a650 100644
--- a/recipes/bioconductor-drosgenome1cdf/meta.yaml
+++ b/recipes/bioconductor-drosgenome1cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "drosgenome1cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: e12983f2148c10ef1faa50f810b6eee3
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-drosgenome1cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-drosgenome1probe/meta.yaml b/recipes/bioconductor-drosgenome1probe/meta.yaml
index e944121e7679f..ec78a4874ba4f 100644
--- a/recipes/bioconductor-drosgenome1probe/meta.yaml
+++ b/recipes/bioconductor-drosgenome1probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "drosgenome1probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 1f12abdfeee65e8a6554f57507d86fb3
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-drosgenome1probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-drosophila2.db/meta.yaml b/recipes/bioconductor-drosophila2.db/meta.yaml
index aa6cda347819e..93fbb18884cc1 100644
--- a/recipes/bioconductor-drosophila2.db/meta.yaml
+++ b/recipes/bioconductor-drosophila2.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "drosophila2.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: c01d0d1b5e17c3b36ad801b44da72b96
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-drosophila2.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.dm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.dm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.dm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.dm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-drosophila2cdf/meta.yaml b/recipes/bioconductor-drosophila2cdf/meta.yaml
index f3aa808424b36..1b1e175abbed9 100644
--- a/recipes/bioconductor-drosophila2cdf/meta.yaml
+++ b/recipes/bioconductor-drosophila2cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "drosophila2cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 3323e723c133ff2b6188e22bebf3e20a
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-drosophila2cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-drosophila2probe/meta.yaml b/recipes/bioconductor-drosophila2probe/meta.yaml
index b12a4cb086c88..15be4b2d9a764 100644
--- a/recipes/bioconductor-drosophila2probe/meta.yaml
+++ b/recipes/bioconductor-drosophila2probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "drosophila2probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: ba0251902ea0a5f0db61105bdcdc3530
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-drosophila2probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-drugtargetinteractions/meta.yaml b/recipes/bioconductor-drugtargetinteractions/meta.yaml
index 0e37c7539a4e0..27b696b08cd54 100644
--- a/recipes/bioconductor-drugtargetinteractions/meta.yaml
+++ b/recipes/bioconductor-drugtargetinteractions/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.1" %}
 {% set name = "drugTargetInteractions" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9fdf995df89dbce9197ad2577325b409
+  md5: c1a702c085df262e0a697b6687ea3ee4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-drugtargetinteractions", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocStyle, knitr, rmarkdown, ggplot2, reshape2, DT, EnsDb.Hsapiens.v86
 requirements:
   host:
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-uniprot.ws >=2.40.0,<2.41.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-uniprot.ws >=2.42.0,<2.43.0'
     - r-base
     - r-dplyr
     - r-rappdirs
     - r-rsqlite
   run:
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-uniprot.ws >=2.40.0,<2.41.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-uniprot.ws >=2.42.0,<2.43.0'
     - r-base
     - r-dplyr
     - r-rappdirs
diff --git a/recipes/bioconductor-drugvsdisease/meta.yaml b/recipes/bioconductor-drugvsdisease/meta.yaml
index 5a94487874b41..1189be641777b 100644
--- a/recipes/bioconductor-drugvsdisease/meta.yaml
+++ b/recipes/bioconductor-drugvsdisease/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.42.0" %}
+{% set version = "2.44.0" %}
 {% set name = "DrugVsDisease" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,45 +11,46 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cea656c739b76d8bc0c44206d3419ae0
+  md5: cfb6f4111b0003213278308c1672e49c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-drugvsdisease", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-arrayexpress >=1.60.0,<1.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-cmap2data >=1.36.0,<1.37.0'
-    - 'bioconductor-drugvsdiseasedata >=1.36.0,<1.37.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-arrayexpress >=1.62.0,<1.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-cmap2data >=1.38.0,<1.39.0'
+    - 'bioconductor-drugvsdiseasedata >=1.38.0,<1.39.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
     - 'bioconductor-hgu133a.db >=3.13.0,<3.14.0'
     - 'bioconductor-hgu133a2.db >=3.13.0,<3.14.0'
     - 'bioconductor-hgu133plus2.db >=3.13.0,<3.14.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
     - r-runit
     - r-xtable
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-arrayexpress >=1.60.0,<1.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-cmap2data >=1.36.0,<1.37.0'
-    - 'bioconductor-drugvsdiseasedata >=1.36.0,<1.37.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-arrayexpress >=1.62.0,<1.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-cmap2data >=1.38.0,<1.39.0'
+    - 'bioconductor-drugvsdiseasedata >=1.38.0,<1.39.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
     - 'bioconductor-hgu133a.db >=3.13.0,<3.14.0'
     - 'bioconductor-hgu133a2.db >=3.13.0,<3.14.0'
     - 'bioconductor-hgu133plus2.db >=3.13.0,<3.14.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
     - r-runit
     - r-xtable
diff --git a/recipes/bioconductor-drugvsdiseasedata/meta.yaml b/recipes/bioconductor-drugvsdiseasedata/meta.yaml
index d780758c2d4db..ddef5ea5e9960 100644
--- a/recipes/bioconductor-drugvsdiseasedata/meta.yaml
+++ b/recipes/bioconductor-drugvsdiseasedata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "DrugVsDiseasedata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 64c011debe7f2f876d073b7383502db0
+  md5: 40b800653aab57e822a18afe5bd1a2e7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-drugvsdiseasedata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-drugvsdiseasedata/post-link.sh b/recipes/bioconductor-drugvsdiseasedata/post-link.sh
index 1bea3948414ee..f2a69117547ff 100644
--- a/recipes/bioconductor-drugvsdiseasedata/post-link.sh
+++ b/recipes/bioconductor-drugvsdiseasedata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "drugvsdiseasedata-1.36.0"
+installBiocDataPackage.sh "drugvsdiseasedata-1.38.0"
diff --git a/recipes/bioconductor-dstruct/meta.yaml b/recipes/bioconductor-dstruct/meta.yaml
index ed2b313366a99..6324f6b91a238 100644
--- a/recipes/bioconductor-dstruct/meta.yaml
+++ b/recipes/bioconductor-dstruct/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "dStruct" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: de647acd70d0a19a5b1bdf9758a8389c
+  md5: 294cd694534f0d82a92aaabeea86836f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dstruct", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
+# Suggests: BiocStyle, knitr, rmarkdown, tidyverse, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - r-purrr
@@ -30,8 +31,8 @@ requirements:
     - r-rlang
     - r-zoo
   run:
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - r-purrr
@@ -45,6 +46,6 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: 'GPL (>= 2)'
   summary: 'Identifying differentially reactive regions from RNA structurome profiling data'
-  description: 'dStruct identifies differentially reactive regions from RNA structurome profiling data. dStruct is compatible with a broad range of structurome profiling technologies, e.g., SHAPE-MaP, DMS-MaPseq, Structure-Seq, SHAPE-Seq, etc. See Choudhary et al, Genome Biology, 2019 for the underlying method.'
+  description: 'dStruct identifies differentially reactive regions from RNA structurome profiling data. dStruct is compatible with a broad range of structurome profiling technologies, e.g., SHAPE-MaP, DMS-MaPseq, Structure-Seq, SHAPE-Seq, etc. See Choudhary et al., Genome Biology, 2019 for the underlying method.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
diff --git a/recipes/bioconductor-dta/meta.yaml b/recipes/bioconductor-dta/meta.yaml
index a5da04f2395dc..8ce1f64afc9a8 100644
--- a/recipes/bioconductor-dta/meta.yaml
+++ b/recipes/bioconductor-dta/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.46.0" %}
+{% set version = "2.48.0" %}
 {% set name = "DTA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5d4f0fb0b0ca75c66def75c8a31f6867
+  md5: 58705aacdbf08c61d4713273dbd9bc6f
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dta", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-dune/meta.yaml b/recipes/bioconductor-dune/meta.yaml
index 41c46b2937b8e..5b2e50d6b815b 100644
--- a/recipes/bioconductor-dune/meta.yaml
+++ b/recipes/bioconductor-dune/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "Dune" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3842b818ceba7018c1cfa4b89a41347d
+  md5: afc7d133de0af7ccdc64a9a7a3722ccb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dune", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat (>= 2.1.0)
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-aricode
     - r-base
     - r-dplyr
@@ -33,8 +34,8 @@ requirements:
     - r-rcolorbrewer
     - r-tidyr
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-aricode
     - r-base
     - r-dplyr
diff --git a/recipes/bioconductor-duoclustering2018/meta.yaml b/recipes/bioconductor-duoclustering2018/meta.yaml
index 1fda672436ba2..4d5c22819da1a 100644
--- a/recipes/bioconductor-duoclustering2018/meta.yaml
+++ b/recipes/bioconductor-duoclustering2018/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "DuoClustering2018" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 697a0b8aecfb07cb6034d7626001f262
+  md5: a2761f4db56025af2eaf8240392d01a0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-duoclustering2018", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, iSEE, scater, SingleCellExperiment, SummarizedExperiment, plyr
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -33,7 +34,7 @@ requirements:
     - r-tidyr
     - r-viridis
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -45,7 +46,7 @@ requirements:
     - r-tidyr
     - r-viridis
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-duoclustering2018/post-link.sh b/recipes/bioconductor-duoclustering2018/post-link.sh
index 1b85c5cdaacd6..25113c1241a25 100644
--- a/recipes/bioconductor-duoclustering2018/post-link.sh
+++ b/recipes/bioconductor-duoclustering2018/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "duoclustering2018-1.18.0"
+installBiocDataPackage.sh "duoclustering2018-1.20.0"
diff --git a/recipes/bioconductor-dupradar/meta.yaml b/recipes/bioconductor-dupradar/meta.yaml
index 6fc83d6d9e27d..c628243cfea17 100644
--- a/recipes/bioconductor-dupradar/meta.yaml
+++ b/recipes/bioconductor-dupradar/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "dupRadar" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 25020f4fc2033e3cb25d8fbc428219a6
+  md5: 306ba6ddb1786eb7ec5e6cb4bc15562e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dupradar", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, AnnotationHub
 requirements:
   host:
-    - 'bioconductor-rsubread >=2.14.0,<2.15.0'
+    - 'bioconductor-rsubread >=2.16.0,<2.17.0'
     - r-base
     - r-kernsmooth
   run:
-    - 'bioconductor-rsubread >=2.14.0,<2.15.0'
+    - 'bioconductor-rsubread >=2.16.0,<2.17.0'
     - r-base
     - r-kernsmooth
 test:
diff --git a/recipes/bioconductor-dvddata/meta.yaml b/recipes/bioconductor-dvddata/meta.yaml
index 5f230dac04d9c..2ab2b9dc07a65 100644
--- a/recipes/bioconductor-dvddata/meta.yaml
+++ b/recipes/bioconductor-dvddata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "DvDdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c21d1ca3b1808272b1d90004201512b2
+  md5: d07387219229c006ba96b9ab43ddf4ff
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dvddata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-dvddata/post-link.sh b/recipes/bioconductor-dvddata/post-link.sh
index d1a8b4afcd138..650d586b47f90 100644
--- a/recipes/bioconductor-dvddata/post-link.sh
+++ b/recipes/bioconductor-dvddata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "dvddata-1.36.0"
+installBiocDataPackage.sh "dvddata-1.38.0"
diff --git a/recipes/bioconductor-dyebias/meta.yaml b/recipes/bioconductor-dyebias/meta.yaml
index b95f864f1361d..fbbc05f23ec24 100644
--- a/recipes/bioconductor-dyebias/meta.yaml
+++ b/recipes/bioconductor-dyebias/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.60.0" %}
+{% set version = "1.62.0" %}
 {% set name = "dyebias" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 3103ff75b1717ba43653c272fec9c73f
+  md5: 2b3e10379a29b0cb931514e06fe7259f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dyebias", max_pin="x.x") }}'
   noarch: generic
 # Suggests: limma, convert, GEOquery, dyebiasexamples, methods
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-dyebiasexamples/meta.yaml b/recipes/bioconductor-dyebiasexamples/meta.yaml
index 587748a9d2149..060513470d522 100644
--- a/recipes/bioconductor-dyebiasexamples/meta.yaml
+++ b/recipes/bioconductor-dyebiasexamples/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "dyebiasexamples" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 8ba42215153001f0334b098938eacf9c
+  md5: b73aa6c0c98150b2bccba7802dda8c86
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dyebiasexamples", max_pin="x.x") }}'
   noarch: generic
 # Suggests: dyebias, convert, Biobase
 requirements:
   host:
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
   run:
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-dyebiasexamples/post-link.sh b/recipes/bioconductor-dyebiasexamples/post-link.sh
index b8db735360a71..15ba43db540e5 100644
--- a/recipes/bioconductor-dyebiasexamples/post-link.sh
+++ b/recipes/bioconductor-dyebiasexamples/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "dyebiasexamples-1.40.0"
+installBiocDataPackage.sh "dyebiasexamples-1.42.0"
diff --git a/recipes/bioconductor-dyndoc/meta.yaml b/recipes/bioconductor-dyndoc/meta.yaml
index fe9c210847aff..e987221cef2d7 100644
--- a/recipes/bioconductor-dyndoc/meta.yaml
+++ b/recipes/bioconductor-dyndoc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.78.0" %}
+{% set version = "1.80.0" %}
 {% set name = "DynDoc" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ec7f41041d851001acdf1c2c0b3b3626
+  md5: 1d5ea2c0b36289466bdb8095b39634fd
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-dyndoc", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-easier/meta.yaml b/recipes/bioconductor-easier/meta.yaml
index 2cedf31d5992c..340d682ef186c 100644
--- a/recipes/bioconductor-easier/meta.yaml
+++ b/recipes/bioconductor-easier/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.3" %}
+{% set version = "1.8.0" %}
 {% set name = "easier" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 722dd22a32a8bc541b0ead14b639594d
+  md5: 65f72a669a157fdf57501fb32d1c0333
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-easier", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, testthat, SummarizedExperiment, viper
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-decoupler >=2.6.0,<2.7.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-dorothea >=1.12.0,<1.13.0'
-    - 'bioconductor-easierdata >=1.6.0,<1.7.0'
-    - 'bioconductor-progeny >=1.22.0,<1.23.0'
-    - 'bioconductor-quantiseqr >=1.8.0,<1.9.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-decoupler >=2.8.0,<2.9.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-dorothea >=1.14.0,<1.15.0'
+    - 'bioconductor-easierdata >=1.8.0,<1.9.0'
+    - 'bioconductor-progeny >=1.24.0,<1.25.0'
+    - 'bioconductor-quantiseqr >=1.10.0,<1.11.0'
     - r-base
     - r-coin
     - r-dplyr
@@ -43,13 +44,13 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-decoupler >=2.6.0,<2.7.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-dorothea >=1.12.0,<1.13.0'
-    - 'bioconductor-easierdata >=1.6.0,<1.7.0'
-    - 'bioconductor-progeny >=1.22.0,<1.23.0'
-    - 'bioconductor-quantiseqr >=1.8.0,<1.9.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-decoupler >=2.8.0,<2.9.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-dorothea >=1.14.0,<1.15.0'
+    - 'bioconductor-easierdata >=1.8.0,<1.9.0'
+    - 'bioconductor-progeny >=1.24.0,<1.25.0'
+    - 'bioconductor-quantiseqr >=1.10.0,<1.11.0'
     - r-base
     - r-coin
     - r-dplyr
diff --git a/recipes/bioconductor-easierdata/meta.yaml b/recipes/bioconductor-easierdata/meta.yaml
index 7c385d3a4d023..b7b3eb87fc60f 100644
--- a/recipes/bioconductor-easierdata/meta.yaml
+++ b/recipes/bioconductor-easierdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "easierData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c8cdf9119aa80107e2d8d6853c2a6fde
+  md5: 5092649863b833021ff8593731571183
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-easierdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-easierdata/post-link.sh b/recipes/bioconductor-easierdata/post-link.sh
index f734c14187602..c4e73343e9661 100644
--- a/recipes/bioconductor-easierdata/post-link.sh
+++ b/recipes/bioconductor-easierdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "easierdata-1.6.0"
+installBiocDataPackage.sh "easierdata-1.8.0"
diff --git a/recipes/bioconductor-easylift/build.sh b/recipes/bioconductor-easylift/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-easylift/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-easylift/meta.yaml b/recipes/bioconductor-easylift/meta.yaml
new file mode 100644
index 0000000000000..61eabc651b5e0
--- /dev/null
+++ b/recipes/bioconductor-easylift/meta.yaml
@@ -0,0 +1,47 @@
+{% set version = "1.0.0" %}
+{% set name = "easylift" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
+  md5: 86d8c0188c35ab56732fd5cc55475e8c
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-easylift", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: testthat (>= 3.0.0), IRanges, knitr, BiocStyle, rmarkdown
+requirements:
+  host:
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - r-base
+    - r-r.utils
+  run:
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - r-base
+    - r-r.utils
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'MIT + file LICENSE'
+  summary: 'An R package to perform genomic liftover'
+  description: 'The easylift package provides a convenient tool for genomic liftover operations between different genome assemblies. It seamlessly works with Bioconductor''s GRanges objects and chain files from the UCSC Genome Browser, allowing for straightforward handling of genomic ranges across various genome versions. One noteworthy feature of easylift is its integration with the BiocFileCache package. This integration automates the management and caching of chain files necessary for liftover operations. Users no longer need to manually specify chain file paths in their function calls, reducing the complexity of the liftover process.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-easyreporting/meta.yaml b/recipes/bioconductor-easyreporting/meta.yaml
index 5f278d52db552..aa88366c1a868 100644
--- a/recipes/bioconductor-easyreporting/meta.yaml
+++ b/recipes/bioconductor-easyreporting/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "easyreporting" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: fa8f5e752448cad38c4a14242247ad60
+  md5: cffad8bbd7df1cd9ac54b4605a0c555e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-easyreporting", max_pin="x.x") }}'
   noarch: generic
 # Suggests: distill, BiocStyle, knitr, readxl, edgeR, limma, EDASeq, statmod
 requirements:
diff --git a/recipes/bioconductor-easyrnaseq/meta.yaml b/recipes/bioconductor-easyrnaseq/meta.yaml
index 18fe1382616eb..4f704725ab89e 100644
--- a/recipes/bioconductor-easyrnaseq/meta.yaml
+++ b/recipes/bioconductor-easyrnaseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.36.0" %}
+{% set version = "2.38.0" %}
 {% set name = "easyRNASeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,53 +11,54 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e5ce1f716e811ef9d2a9aad791b33253
+  md5: c763a083ce852695593a183ff7f9edcb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-easyrnaseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle (>= 2.18.0), BSgenome (>= 1.58.0), BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.4.0), curl, knitr, rmarkdown, RUnit (>= 0.4.32)
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomeintervals >=1.56.0,<1.57.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomeintervals >=1.58.0,<1.59.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-locfit
     - 'r-lsd >=4.1-0'
     - 'r-rappdirs >=0.3.1'
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomeintervals >=1.56.0,<1.57.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomeintervals >=1.58.0,<1.59.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-locfit
     - 'r-lsd >=4.1-0'
diff --git a/recipes/bioconductor-eatonetalchipseq/meta.yaml b/recipes/bioconductor-eatonetalchipseq/meta.yaml
index 8841323159b09..54fe87b9b4f10 100644
--- a/recipes/bioconductor-eatonetalchipseq/meta.yaml
+++ b/recipes/bioconductor-eatonetalchipseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.38.0" %}
+{% set version = "0.40.0" %}
 {% set name = "EatonEtAlChIPseq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fa5225647fa5b852a38635bb2ba759ef
+  md5: e7695c3761d5f3d41dec21b0c8b50947
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-eatonetalchipseq", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-eatonetalchipseq/post-link.sh b/recipes/bioconductor-eatonetalchipseq/post-link.sh
index d230394725d2d..346813c7b54e0 100644
--- a/recipes/bioconductor-eatonetalchipseq/post-link.sh
+++ b/recipes/bioconductor-eatonetalchipseq/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "eatonetalchipseq-0.38.0"
+installBiocDataPackage.sh "eatonetalchipseq-0.40.0"
diff --git a/recipes/bioconductor-ebarrays/meta.yaml b/recipes/bioconductor-ebarrays/meta.yaml
index ab564f3bdf108..54575ad557b04 100644
--- a/recipes/bioconductor-ebarrays/meta.yaml
+++ b/recipes/bioconductor-ebarrays/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.64.0" %}
+{% set version = "2.66.0" %}
 {% set name = "EBarrays" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 877a76dfa9d767cfc95b8073ddf7e45e
+  md5: d273e2e9411207653d4e079e14484026
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ebarrays", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-cluster
     - r-lattice
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-cluster
     - r-lattice
@@ -38,11 +39,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'GPL (>= 2)'
+  license: 'GPL-3.0-or-later'
   summary: 'Unified Approach for Simultaneous Gene Clustering and Differential Expression Identification'
   description: 'EBarrays provides tools for the analysis of replicated/unreplicated microarray data.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:ebarrays
     - doi:10.1111/j.1541-0420.2006.00611.x
diff --git a/recipes/bioconductor-ebcoexpress/meta.yaml b/recipes/bioconductor-ebcoexpress/meta.yaml
index fce53590dbdff..e9424815f0a43 100644
--- a/recipes/bioconductor-ebcoexpress/meta.yaml
+++ b/recipes/bioconductor-ebcoexpress/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.44.0" %}
+{% set version = "1.46.0" %}
 {% set name = "EBcoexpress" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a279447b6ebe095682a46c302d2759f3
+  md5: 66fa4257fbd0222064b30f6c15e74ab1
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ebcoexpress", max_pin="x.x") }}'
 # Suggests: graph, igraph, colorspace
 requirements:
   host:
-    - 'bioconductor-ebarrays >=2.64.0,<2.65.0'
+    - 'bioconductor-ebarrays >=2.66.0,<2.67.0'
     - r-base
     - r-mclust
     - r-minqa
     - libblas
     - liblapack
   run:
-    - 'bioconductor-ebarrays >=2.64.0,<2.65.0'
+    - 'bioconductor-ebarrays >=2.66.0,<2.67.0'
     - r-base
     - r-mclust
     - r-minqa
@@ -39,8 +40,14 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'GPL (>= 2)'
+  license: 'GPL-3.0-or-later'
   summary: 'EBcoexpress for Differential Co-Expression Analysis'
   description: 'An Empirical Bayesian Approach to Differential Co-Expression Analysis at the Gene-Pair Level'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
+
diff --git a/recipes/bioconductor-ebimage/meta.yaml b/recipes/bioconductor-ebimage/meta.yaml
index 4eb7975ed1018..e8b8c950d28d8 100644
--- a/recipes/bioconductor-ebimage/meta.yaml
+++ b/recipes/bioconductor-ebimage/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "4.42.0" %}
+{% set version = "4.44.0" %}
 {% set name = "EBImage" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,16 +11,17 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9cd9c206c813cac474584a16c247946b
+  md5: 22e920a81ab633cdbf753daf3e128d64
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ebimage", max_pin="x.x") }}'
 # Suggests: BiocStyle, digest, knitr, rmarkdown, shiny
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-abind
     - r-base
     - 'r-fftwtools >=0.9-7'
@@ -34,7 +35,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-abind
     - r-base
     - 'r-fftwtools >=0.9-7'
diff --git a/recipes/bioconductor-ebsea/meta.yaml b/recipes/bioconductor-ebsea/meta.yaml
index db931d1204df1..d16b40144208f 100644
--- a/recipes/bioconductor-ebsea/meta.yaml
+++ b/recipes/bioconductor-ebsea/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "EBSEA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a127e02c2d643195ec73bfa7668f9301
+  md5: d016b1e83c4b885565a573db1b134fbd
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ebsea", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-empiricalbrownsmethod >=1.28.0,<1.29.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-empiricalbrownsmethod >=1.30.0,<1.31.0'
     - r-base
   run:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-empiricalbrownsmethod >=1.28.0,<1.29.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-empiricalbrownsmethod >=1.30.0,<1.31.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-ebseq/meta.yaml b/recipes/bioconductor-ebseq/meta.yaml
index 6254ef104cf0e..f67fc69c13708 100644
--- a/recipes/bioconductor-ebseq/meta.yaml
+++ b/recipes/bioconductor-ebseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "2.0.0" %}
 {% set name = "EBSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1fa9347689a45799ec669c47880beec7
+  md5: e64aabb38197aba0ee5985a1558cce60
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
-  noarch: generic
+  run_exports: '{{ pin_subpackage("bioconductor-ebseq", max_pin="x.x") }}'
+# SystemRequirements: c++11
 requirements:
   host:
     - r-base
+    - r-bh
     - r-blockmodeling
     - r-gplots
+    - 'r-rcpp >=0.12.11'
+    - 'r-rcppeigen >=0.3.2.9.0'
     - r-testthat
+    - libblas
+    - liblapack
   run:
     - r-base
+    - r-bh
     - r-blockmodeling
     - r-gplots
+    - 'r-rcpp >=0.12.11'
+    - 'r-rcppeigen >=0.3.2.9.0'
     - r-testthat
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - make
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
@@ -38,6 +51,8 @@ about:
   summary: 'An R package for gene and isoform differential expression analysis of RNA-seq data'
   description: 'Differential Expression analysis at both gene and isoform level using RNA-seq data'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:ebseq
     - doi:10.1093/bioinformatics/btt087
diff --git a/recipes/bioconductor-ebseqhmm/meta.yaml b/recipes/bioconductor-ebseqhmm/meta.yaml
index 6995a1ad16d64..54ba10633450f 100644
--- a/recipes/bioconductor-ebseqhmm/meta.yaml
+++ b/recipes/bioconductor-ebseqhmm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.35.0" %}
 {% set name = "EBSeqHMM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3c727c482e89c11143c38785c3fa9570
+  md5: d63f173eea402bf0e63ed7018c66d4d2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ebseqhmm", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-ebseq >=1.40.0,<1.41.0'
+    - 'bioconductor-ebseq >=2.0.0,<2.1.0'
     - r-base
   run:
-    - 'bioconductor-ebseq >=1.40.0,<1.41.0'
+    - 'bioconductor-ebseq >=2.0.0,<2.1.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-ecoli2.db/meta.yaml b/recipes/bioconductor-ecoli2.db/meta.yaml
index a8c18503deeef..50e6af2815625 100644
--- a/recipes/bioconductor-ecoli2.db/meta.yaml
+++ b/recipes/bioconductor-ecoli2.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "ecoli2.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 110d6549b1d105fdff31ab8f45b08d65
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ecoli2.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.eck12.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.eck12.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.eck12.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.eck12.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ecoli2cdf/meta.yaml b/recipes/bioconductor-ecoli2cdf/meta.yaml
index abb629a424e72..12b93a0ff9c58 100644
--- a/recipes/bioconductor-ecoli2cdf/meta.yaml
+++ b/recipes/bioconductor-ecoli2cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "ecoli2cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b5cd1f05322ce494132ff649de9806c6
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ecoli2cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ecoli2probe/meta.yaml b/recipes/bioconductor-ecoli2probe/meta.yaml
index f1c2ebe9bc3c1..1d0e8f7b2081f 100644
--- a/recipes/bioconductor-ecoli2probe/meta.yaml
+++ b/recipes/bioconductor-ecoli2probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "ecoli2probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 061fcb782ee9da3aa5108881677a4531
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ecoli2probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ecoliasv2cdf/meta.yaml b/recipes/bioconductor-ecoliasv2cdf/meta.yaml
index 5ca8789b939ab..dda890ce3dddf 100644
--- a/recipes/bioconductor-ecoliasv2cdf/meta.yaml
+++ b/recipes/bioconductor-ecoliasv2cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "ecoliasv2cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: d7771ca1648b26a6af5bfb7582c6c778
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ecoliasv2cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ecoliasv2probe/meta.yaml b/recipes/bioconductor-ecoliasv2probe/meta.yaml
index 9d840d05475b1..189c801a32b21 100644
--- a/recipes/bioconductor-ecoliasv2probe/meta.yaml
+++ b/recipes/bioconductor-ecoliasv2probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "ecoliasv2probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b3e4332266184576279c3a478f286dc9
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ecoliasv2probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ecolicdf/meta.yaml b/recipes/bioconductor-ecolicdf/meta.yaml
index 57e2bf50c9017..ae5dec1242d25 100644
--- a/recipes/bioconductor-ecolicdf/meta.yaml
+++ b/recipes/bioconductor-ecolicdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "ecolicdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 4e664c1ac41a8ab68ef22f8a889b916c
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ecolicdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ecolik12.db0/meta.yaml b/recipes/bioconductor-ecolik12.db0/meta.yaml
index af7c68888e039..5fe013dc64149 100644
--- a/recipes/bioconductor-ecolik12.db0/meta.yaml
+++ b/recipes/bioconductor-ecolik12.db0/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "ecoliK12.db0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: acf1faa22de4e8b535baf0d7403acbe0
+  md5: dd303204595a25bc730695462e930247
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ecolik12.db0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ecolik12.db0/post-link.sh b/recipes/bioconductor-ecolik12.db0/post-link.sh
index 3ac028b892847..1ea1a96c05c6f 100644
--- a/recipes/bioconductor-ecolik12.db0/post-link.sh
+++ b/recipes/bioconductor-ecolik12.db0/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "ecolik12.db0-3.17.0"
+installBiocDataPackage.sh "ecolik12.db0-3.18.0"
diff --git a/recipes/bioconductor-ecolileucine/meta.yaml b/recipes/bioconductor-ecolileucine/meta.yaml
index 8292b62611e44..d735e051bbdef 100644
--- a/recipes/bioconductor-ecolileucine/meta.yaml
+++ b/recipes/bioconductor-ecolileucine/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "ecoliLeucine" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8f29571bdbf113fe17eb2a91638acf1a
+  md5: 30af71114480d851f4dad806e7f8e0d1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ecolileucine", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
     - 'bioconductor-ecolicdf >=2.18.0,<2.19.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
     - 'bioconductor-ecolicdf >=2.18.0,<2.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ecolileucine/post-link.sh b/recipes/bioconductor-ecolileucine/post-link.sh
index c8c483bd70916..069ee49494795 100644
--- a/recipes/bioconductor-ecolileucine/post-link.sh
+++ b/recipes/bioconductor-ecolileucine/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "ecolileucine-1.40.0"
+installBiocDataPackage.sh "ecolileucine-1.42.0"
diff --git a/recipes/bioconductor-ecoliprobe/meta.yaml b/recipes/bioconductor-ecoliprobe/meta.yaml
index d5bea7a7e2d95..fc9b2941ec792 100644
--- a/recipes/bioconductor-ecoliprobe/meta.yaml
+++ b/recipes/bioconductor-ecoliprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "ecoliprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 09586f9907bdbc43ba5ea4ce07c1f756
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ecoliprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ecolisakai.db0/meta.yaml b/recipes/bioconductor-ecolisakai.db0/meta.yaml
index 4673684e174f2..f4a33593ee350 100644
--- a/recipes/bioconductor-ecolisakai.db0/meta.yaml
+++ b/recipes/bioconductor-ecolisakai.db0/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "ecoliSakai.db0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2f49e4fe2806f14f78db0de22d37a7e7
+  md5: 2afd28e9062d869d37e3d65dbe410bcb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ecolisakai.db0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ecolisakai.db0/post-link.sh b/recipes/bioconductor-ecolisakai.db0/post-link.sh
index 818939129b685..5a26a1ced0260 100644
--- a/recipes/bioconductor-ecolisakai.db0/post-link.sh
+++ b/recipes/bioconductor-ecolisakai.db0/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "ecolisakai.db0-3.17.0"
+installBiocDataPackage.sh "ecolisakai.db0-3.18.0"
diff --git a/recipes/bioconductor-ecolitk/meta.yaml b/recipes/bioconductor-ecolitk/meta.yaml
index 512663e7315e7..eb82d060744b5 100644
--- a/recipes/bioconductor-ecolitk/meta.yaml
+++ b/recipes/bioconductor-ecolitk/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "ecolitk" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 8867acb9dd27e581f696ec0afd77be79
+  md5: 58667dc1f403986935c98a97f2e0b9e2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ecolitk", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ecoliLeucine, ecolicdf, graph, multtest, affy
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-edaseq/meta.yaml b/recipes/bioconductor-edaseq/meta.yaml
index d9ee0fb7067a8..4e0352c7939f4 100644
--- a/recipes/bioconductor-edaseq/meta.yaml
+++ b/recipes/bioconductor-edaseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.34.0" %}
+{% set version = "2.36.0" %}
 {% set name = "EDASeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,41 +11,42 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1bedbd7d1b319ddeb8eff7fc5d2d9bb7
+  md5: b2d28fdad31e8c56f68873b599ffc235
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-edaseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, yeastRNASeq, leeBamViews, edgeR, KernSmooth, testthat, DESeq2, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-aroma.light >=3.30.0,<3.31.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-aroma.light >=3.32.0,<3.33.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - r-biocmanager
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-aroma.light >=3.30.0,<3.31.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-aroma.light >=3.32.0,<3.33.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - r-biocmanager
 test:
diff --git a/recipes/bioconductor-edge/meta.yaml b/recipes/bioconductor-edge/meta.yaml
index 2b0e02ce3cdcb..fc6de808fba13 100644
--- a/recipes/bioconductor-edge/meta.yaml
+++ b/recipes/bioconductor-edge/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.32.0" %}
+{% set version = "2.34.0" %}
 {% set name = "edge" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: ce7aff708078e2ddba0b00c919a67429
+  md5: 89d1683b6b4f9723b4c4fcef6972d543
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-edge", max_pin="x.x") }}'
 # Suggests: testthat, knitr, ggplot2, reshape2
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-snm >=1.48.0,<1.49.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-snm >=1.50.0,<1.51.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-mass
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-snm >=1.48.0,<1.49.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-snm >=1.50.0,<1.51.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-mass
   build:
diff --git a/recipes/bioconductor-edger/meta.yaml b/recipes/bioconductor-edger/meta.yaml
index 5a3493060c73a..b8f25cddfaf0d 100644
--- a/recipes/bioconductor-edger/meta.yaml
+++ b/recipes/bioconductor-edger/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.42.4" %}
+{% set version = "4.0.16" %}
 {% set name = "edgeR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ad81660fe783c10b69e06fdab6130dc8
+  md5: 8fb1c6c67e29d299c991d16d0f6c5f5b
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
-# Suggests: jsonlite, readr, rhdf5, splines, statmod, Biobase, AnnotationDbi, SummarizedExperiment, org.Hs.eg.db, Matrix, SeuratObject
+  run_exports: '{{ pin_subpackage("bioconductor-edger", max_pin="x.x") }}'
+# Suggests: jsonlite, readr, rhdf5, splines, knitr, AnnotationDbi, Biobase, BiocStyle, SummarizedExperiment, org.Hs.eg.db, Matrix, SeuratObject
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-locfit
     - r-rcpp
     - libblas
     - liblapack
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-locfit
     - r-rcpp
@@ -40,11 +41,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'GPL (>=2)'
+  license: 'GPL-3.0-or-later'
   summary: 'Empirical Analysis of Digital Gene Expression Data in R'
   description: 'Differential expression analysis of RNA-seq expression profiles with biological replication. Implements a range of statistical methodology based on the negative binomial distributions, including empirical Bayes estimation, exact tests, generalized linear models and quasi-likelihood tests. As well as RNA-seq, it be applied to differential signal analysis of other types of genomic data that produce read counts, including ChIP-seq, ATAC-seq, Bisulfite-seq, SAGE and CAGE.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:edger
     - usegalaxy-eu:edger
diff --git a/recipes/bioconductor-edirquery/meta.yaml b/recipes/bioconductor-edirquery/meta.yaml
index eeb40850533ac..2adef6a882208 100644
--- a/recipes/bioconductor-edirquery/meta.yaml
+++ b/recipes/bioconductor-edirquery/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "EDIRquery" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5ef6b7ba141cd7778c7d5bf31d138af2
+  md5: ff19937af17cf0a7a874b986192d6b1c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-edirquery", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
     - r-base
     - 'r-readr >=2.1.2'
     - 'r-tibble >=3.1.6'
     - 'r-tictoc >=1.0.1'
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
     - r-base
     - 'r-readr >=2.1.2'
     - 'r-tibble >=3.1.6'
diff --git a/recipes/bioconductor-eds/meta.yaml b/recipes/bioconductor-eds/meta.yaml
index fc15dbcda7029..de545d756c8e0 100644
--- a/recipes/bioconductor-eds/meta.yaml
+++ b/recipes/bioconductor-eds/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "eds" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 0250c849115fe963572ba6669f5377a3
+  md5: 5992ff2692afb665a65bc9755175de5c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-eds", max_pin="x.x") }}'
 # Suggests: knitr, tximportData, testthat (>= 3.0.0)
 # SystemRequirements: C++11
 requirements:
diff --git a/recipes/bioconductor-egad/meta.yaml b/recipes/bioconductor-egad/meta.yaml
index 9413400986988..d7cb742f73393 100644
--- a/recipes/bioconductor-egad/meta.yaml
+++ b/recipes/bioconductor-egad/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "EGAD" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f46e429f7ee3c80517e8fa46e1819e18
+  md5: 9a76ae26d942a1e8b8c8764b80c69927
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-egad", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, rmarkdown, markdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-gplots
     - r-igraph
@@ -34,10 +35,10 @@ requirements:
     - r-rcurl
     - r-zoo
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-gplots
     - r-igraph
diff --git a/recipes/bioconductor-egseadata/meta.yaml b/recipes/bioconductor-egseadata/meta.yaml
index bf8e5346a6f45..aab5bfb3fdc69 100644
--- a/recipes/bioconductor-egseadata/meta.yaml
+++ b/recipes/bioconductor-egseadata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "EGSEAdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1ccaaafd4866fa1cf07e06b6370739a3
+  md5: 838b30ae6caf7c3cbb854e0404b52cda
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-egseadata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: EGSEA
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-egseadata/post-link.sh b/recipes/bioconductor-egseadata/post-link.sh
index d17c19a3933ce..4969b6b51c98a 100644
--- a/recipes/bioconductor-egseadata/post-link.sh
+++ b/recipes/bioconductor-egseadata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "egseadata-1.28.0"
+installBiocDataPackage.sh "egseadata-1.30.0"
diff --git a/recipes/bioconductor-eir/meta.yaml b/recipes/bioconductor-eir/meta.yaml
index 6a9d27cf785b5..882112a2aaeb1 100644
--- a/recipes/bioconductor-eir/meta.yaml
+++ b/recipes/bioconductor-eir/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "eiR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 23f3e513756302dbc768aa836d474f0f
+  md5: 71e5c96821411e053b417fb15618e1cb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-eir", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitcitations, knitr, knitrBootstrap,rmarkdown,RSQLite
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-chemminer >=3.52.0,<3.53.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-chemminer >=3.54.0,<3.55.0'
     - r-base
     - r-dbi
     - r-digest
@@ -33,8 +34,8 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-chemminer >=3.52.0,<3.53.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-chemminer >=3.54.0,<3.55.0'
     - r-base
     - r-dbi
     - r-digest
diff --git a/recipes/bioconductor-eisar/meta.yaml b/recipes/bioconductor-eisar/meta.yaml
index c06ab9d062533..5daa7b7fcd320 100644
--- a/recipes/bioconductor-eisar/meta.yaml
+++ b/recipes/bioconductor-eisar/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "eisaR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,32 +11,33 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3338687a24a33d16373c1033c2150c7f
+  md5: 0a81a6727f2514ce8e2836cc170bdb19
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-eisar", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, BiocStyle, QuasR, Rbowtie, Rhisat2, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg38, ensembldb, AnnotationDbi, GenomicFeatures, rtracklayer
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-elmer.data/meta.yaml b/recipes/bioconductor-elmer.data/meta.yaml
index 7d864ee0ec783..46a704674c673 100644
--- a/recipes/bioconductor-elmer.data/meta.yaml
+++ b/recipes/bioconductor-elmer.data/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.24.0" %}
+{% set version = "2.26.0" %}
 {% set name = "ELMER.data" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4bb614a1bd1fd96f91af883bad29c914
+  md5: 565ea1aa52f3f61d16b7560859ed7a3a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-elmer.data", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, dplyr, devtools, DT, rmarkdown
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-elmer.data/post-link.sh b/recipes/bioconductor-elmer.data/post-link.sh
index e9acc598f0002..f070b978224f7 100644
--- a/recipes/bioconductor-elmer.data/post-link.sh
+++ b/recipes/bioconductor-elmer.data/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "elmer.data-2.24.0"
+installBiocDataPackage.sh "elmer.data-2.26.0"
diff --git a/recipes/bioconductor-elmer/meta.yaml b/recipes/bioconductor-elmer/meta.yaml
index f306c2e69897e..680af36125772 100644
--- a/recipes/bioconductor-elmer/meta.yaml
+++ b/recipes/bioconductor-elmer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.24.1" %}
+{% set version = "2.26.0" %}
 {% set name = "ELMER" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d6a247672fe62e4bedb7b72a56af020e
+  md5: 528e6779b95faafbb8ff2e32e0b28ca5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-elmer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, AnnotationHub, ExperimentHub, knitr, testthat, data.table, DT, GenomicInteractions, webshot, R.utils, covr, sesameData
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-elmer.data >=2.24.0,<2.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tcgabiolinks >=2.28.0,<2.29.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-elmer.data >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tcgabiolinks >=2.30.0,<2.31.0'
     - r-base
     - r-circlize
     - r-doparallel
@@ -62,20 +63,20 @@ requirements:
     - r-tidyr
     - r-xml2
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-elmer.data >=2.24.0,<2.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tcgabiolinks >=2.28.0,<2.29.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-elmer.data >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tcgabiolinks >=2.30.0,<2.31.0'
     - r-base
     - r-circlize
     - r-doparallel
diff --git a/recipes/bioconductor-emdomics/meta.yaml b/recipes/bioconductor-emdomics/meta.yaml
index d592a8cc531b5..f0657e63a91b6 100644
--- a/recipes/bioconductor-emdomics/meta.yaml
+++ b/recipes/bioconductor-emdomics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.30.0" %}
+{% set version = "2.32.0" %}
 {% set name = "EMDomics" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 23c951e5766c53a07cc1946335b4e06c
+  md5: 3ac097828648747f0be1ed4d956ecfa7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-emdomics", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-cdft
     - r-emdist
     - r-ggplot2
     - r-matrixstats
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-cdft
     - r-emdist
diff --git a/recipes/bioconductor-empiricalbrownsmethod/meta.yaml b/recipes/bioconductor-empiricalbrownsmethod/meta.yaml
index 04d10e3cba9a4..e73e26279321b 100644
--- a/recipes/bioconductor-empiricalbrownsmethod/meta.yaml
+++ b/recipes/bioconductor-empiricalbrownsmethod/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "EmpiricalBrownsMethod" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c7c4a27f1986e21a7bf4a447305fb916
+  md5: cde2165928019f9c13982d640a1303c5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-empiricalbrownsmethod", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, testthat, knitr, rmarkdown
 requirements:
diff --git a/recipes/bioconductor-emtdata/meta.yaml b/recipes/bioconductor-emtdata/meta.yaml
index c94df7781a194..7dbe179742d90 100644
--- a/recipes/bioconductor-emtdata/meta.yaml
+++ b/recipes/bioconductor-emtdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "emtdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: e4c17e43c1d50287179f7fb2f594d6c3
+  md5: 4f861584cce979edd6d7bdce3624e916
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-emtdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 3.0.0), stringr, plyr, prettydoc, BiocStyle, Homo.sapiens, RColorBrewer, rmarkdown, BiocFileCache, knitr
 requirements:
   host:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-emtdata/post-link.sh b/recipes/bioconductor-emtdata/post-link.sh
index 414a9037e8614..93baa8560da53 100644
--- a/recipes/bioconductor-emtdata/post-link.sh
+++ b/recipes/bioconductor-emtdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "emtdata-1.8.0"
+installBiocDataPackage.sh "emtdata-1.10.0"
diff --git a/recipes/bioconductor-encodexplorerdata/meta.yaml b/recipes/bioconductor-encodexplorerdata/meta.yaml
index 4777d7613ad5e..5eb72ebf61053 100644
--- a/recipes/bioconductor-encodexplorerdata/meta.yaml
+++ b/recipes/bioconductor-encodexplorerdata/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.5" %}
 {% set name = "ENCODExplorerData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: c6d9b491548529db0739b79c98adacd7
 build:
-  number: 7
+  number: 8
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-encodexplorerdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: AnnotationHub, RUnit, BiocGenerics, knitr, curl, httr
 requirements:
@@ -31,7 +32,7 @@ requirements:
     - r-jsonlite
     - r-rcurl
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-enhancedvolcano/meta.yaml b/recipes/bioconductor-enhancedvolcano/meta.yaml
index 6940df17b140d..717cd7a75281d 100644
--- a/recipes/bioconductor-enhancedvolcano/meta.yaml
+++ b/recipes/bioconductor-enhancedvolcano/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "EnhancedVolcano" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 32e59ff1c6981c80fcfef699efbe2798
+  md5: b8224be72afe86d3d951a6a8fdc6788e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-enhancedvolcano", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ggalt, ggrastr, RUnit, BiocGenerics, knitr, DESeq2, pasilla, airway, org.Hs.eg.db, gridExtra, magrittr, rmarkdown
 requirements:
diff --git a/recipes/bioconductor-enhancerhomologsearch/meta.yaml b/recipes/bioconductor-enhancerhomologsearch/meta.yaml
index 8ce3dff69f64b..2d0d66cd9e7d2 100644
--- a/recipes/bioconductor-enhancerhomologsearch/meta.yaml
+++ b/recipes/bioconductor-enhancerhomologsearch/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.1" %}
+{% set version = "1.8.2" %}
 {% set name = "enhancerHomologSearch" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 72963b28ae430436bea374d01e6158da
-  patches:
-    - infinity.patch
+  md5: ce4ad762be83b367c02fc926bf67c383
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-enhancerhomologsearch", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, BSgenome.Drerio.UCSC.danRer10, BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10, TxDb.Hsapiens.UCSC.hg38.knownGene, org.Hs.eg.db, TxDb.Mmusculus.UCSC.mm10.knownGene, org.Mm.eg.db, MotifDb, testthat, TFBSTools
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-motifmatchr >=1.22.0,<1.23.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-motifmatchr >=1.24.0,<1.25.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-httr
     - r-jsonlite
@@ -41,17 +40,17 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-motifmatchr >=1.22.0,<1.23.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-motifmatchr >=1.24.0,<1.25.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-httr
     - r-jsonlite
diff --git a/recipes/bioconductor-enmcb/meta.yaml b/recipes/bioconductor-enmcb/meta.yaml
index bcf851b6a4481..137714b151321 100644
--- a/recipes/bioconductor-enmcb/meta.yaml
+++ b/recipes/bioconductor-enmcb/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "EnMCB" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: dc2bd872fb5b7e28ec799d122512d7ab
+  md5: f9fee363d9285ffdf2895062fc0cf26b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-enmcb", max_pin="x.x") }}'
   noarch: generic
 # Suggests: SummarizedExperiment, testthat, Biobase, survminer, affycoretools, knitr, plotROC, limma, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
     - r-base
     - r-boot
     - r-e1071
@@ -35,7 +36,7 @@ requirements:
     - r-survivalroc
     - r-survivalsvm
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
     - r-base
     - r-boot
     - r-e1071
diff --git a/recipes/bioconductor-enmix/meta.yaml b/recipes/bioconductor-enmix/meta.yaml
index 7d2844fd82aa5..d38d91df9f69a 100644
--- a/recipes/bioconductor-enmix/meta.yaml
+++ b/recipes/bioconductor-enmix/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.01" %}
+{% set version = "1.38.01" %}
 {% set name = "ENmix" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,56 +11,57 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 581b13b091573a2925d86004487ed0c3
+  md5: 3ac8861e8c3ad067b1baa266958227cd
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-enmix", max_pin="x.x") }}'
   noarch: generic
 # Suggests: minfiData, RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-geneplotter >=1.78.0,<1.79.0'
-    - 'bioconductor-illuminaio >=0.42.0,<0.43.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-geneplotter >=1.80.0,<1.81.0'
+    - 'bioconductor-illuminaio >=0.44.0,<0.45.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-doparallel
     - r-dynamictreecut
     - r-foreach
     - r-gplots
     - r-gtools
+    - r-irlba
     - r-matrixstats
     - r-quadprog
     - r-rpmm
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-geneplotter >=1.78.0,<1.79.0'
-    - 'bioconductor-illuminaio >=0.42.0,<0.43.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-geneplotter >=1.80.0,<1.81.0'
+    - 'bioconductor-illuminaio >=0.44.0,<0.45.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-doparallel
     - r-dynamictreecut
     - r-foreach
     - r-gplots
     - r-gtools
+    - r-irlba
     - r-matrixstats
     - r-quadprog
     - r-rpmm
diff --git a/recipes/bioconductor-enrichedheatmap/build_failure.osx-64.yaml b/recipes/bioconductor-enrichedheatmap/build_failure.osx-64.yaml
new file mode 100644
index 0000000000000..a339ea97f8532
--- /dev/null
+++ b/recipes/bioconductor-enrichedheatmap/build_failure.osx-64.yaml
@@ -0,0 +1,6 @@
+recipe_sha: 9a6c8d621c8da5f9299d5af966645abebfcfa7fd1cab2bbd703ca5e6f763fec7  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+reason: |-
+  11:47:03 BIOCONDA INFO (ERR) dyld[20647]: Library not loaded: '@rpath/libtapi.dylib' 11:47:03 BIOCONDA INFO (ERR)   Referenced from: '/opt/mambaforge/envs/bioconda/pkgs/ld64_osx-64-609-h0fd476b_15/bin/x86_64-apple-darwin13.4.0-ld' 11:47:03 BIOCONDA INFO (ERR)   Reason: tried: '/opt/mambaforge/envs/bioconda/pkgs/ld64_osx-64-609-h0fd476b_15/bin/../lib/libtapi.dylib' (no such file), '/opt/mambaforge/envs/bioconda/pkgs/ld64_osx-64-609-h0fd476b_15/bin/../lib/libtapi.dylib' (no such file), '/usr/local/lib/libtapi.dylib' (no such file), '/usr/lib/libtapi.dylib' (no such file) 11:47:03 BIOCONDA INFO (ERR) clang-15: error: unable to execute command: Abort trap: 6 11:47:03 BIOCONDA INFO (ERR) clang-15: error: linker command failed due to signal (use -v to see invocation)
+category: |-
+  compiler error
diff --git a/recipes/bioconductor-enrichedheatmap/meta.yaml b/recipes/bioconductor-enrichedheatmap/meta.yaml
index e7ffabb3dd518..87efa37d244c1 100644
--- a/recipes/bioconductor-enrichedheatmap/meta.yaml
+++ b/recipes/bioconductor-enrichedheatmap/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "EnrichedHeatmap" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a3adcecb7cb7b60fb2dd0266052d697b
+  md5: 269aeb6d749072508069805663216dc4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-enrichedheatmap", max_pin="x.x") }}'
 # Suggests: testthat (>= 0.3), knitr, markdown, rmarkdown, genefilter, RColorBrewer
 requirements:
   host:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - 'r-circlize >=0.4.5'
     - r-getoptlong
@@ -32,9 +33,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - 'r-circlize >=0.4.5'
     - r-getoptlong
diff --git a/recipes/bioconductor-enrichmentbrowser/meta.yaml b/recipes/bioconductor-enrichmentbrowser/meta.yaml
index e2505a9c37c89..b55ecad92a7c4 100644
--- a/recipes/bioconductor-enrichmentbrowser/meta.yaml
+++ b/recipes/bioconductor-enrichmentbrowser/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.30.1" %}
+{% set version = "2.32.0" %}
 {% set name = "EnrichmentBrowser" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,52 +11,53 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c543e0cbb1ba98aa022dbfaf08c537ee
+  md5: fa4ec5a19513178896d60057a26ec6ce
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-enrichmentbrowser", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ALL, BiocStyle, ComplexHeatmap, DESeq2, ReportingTools, airway, biocGraph, hgu95av2.db, geneplotter, knitr, msigdbr, rmarkdown, statmod
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-graphite >=1.46.0,<1.47.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-kegggraph >=1.60.0,<1.61.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-pathview >=1.40.0,<1.41.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-safe >=3.40.0,<3.41.0'
-    - 'bioconductor-spia >=2.52.0,<2.53.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-graphite >=1.48.0,<1.49.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-kegggraph >=1.62.0,<1.63.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-pathview >=1.42.0,<1.43.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-safe >=3.42.0,<3.43.0'
+    - 'bioconductor-spia >=2.54.0,<2.55.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-biocmanager
     - r-hwriter
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-graphite >=1.46.0,<1.47.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-kegggraph >=1.60.0,<1.61.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-pathview >=1.40.0,<1.41.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-safe >=3.40.0,<3.41.0'
-    - 'bioconductor-spia >=2.52.0,<2.53.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-graphite >=1.48.0,<1.49.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-kegggraph >=1.62.0,<1.63.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-pathview >=1.42.0,<1.43.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-safe >=3.42.0,<3.43.0'
+    - 'bioconductor-spia >=2.54.0,<2.55.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-biocmanager
     - r-hwriter
diff --git a/recipes/bioconductor-enrichplot/meta.yaml b/recipes/bioconductor-enrichplot/meta.yaml
index 57d62b1537dd7..60ac7b0cc9d3b 100644
--- a/recipes/bioconductor-enrichplot/meta.yaml
+++ b/recipes/bioconductor-enrichplot/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "enrichplot" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d76d773c796cc76d486af2e796b6dca3
+  md5: 4accfec43292c11ec0165092f3266ac2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-enrichplot", max_pin="x.x") }}'
   noarch: generic
-# Suggests: clusterProfiler, dplyr, europepmc, ggupset, knitr, rmarkdown, org.Hs.eg.db, prettydoc, tibble, tidyr, ggforce, AnnotationDbi, ggplotify, ggridges, grDevices, gridExtra, ggrepel (>= 0.9.0), ggstar, treeio, scales, tidytree, ggtreeExtra, tidydr
+# Suggests: clusterProfiler, dplyr, europepmc, ggupset, knitr, rmarkdown, org.Hs.eg.db, prettydoc, tibble, tidyr, ggforce, AnnotationDbi, ggplotify, ggridges, grDevices, gridExtra, ggrepel (>= 0.9.0), ggstar, scales, ggtreeExtra, tidydr
 requirements:
   host:
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
-    - 'bioconductor-gosemsim >=2.26.0,<2.27.0'
-    - 'r-aplot >=0.1.4'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
+    - 'bioconductor-gosemsim >=2.28.0,<2.29.0'
+    - 'r-aplot >=0.2.1'
     - r-base
+    - 'r-ggfun >=0.1.3'
     - r-ggnewscale
     - r-ggplot2
     - r-ggraph
@@ -38,13 +40,14 @@ requirements:
     - r-rlang
     - r-scatterpie
     - r-shadowtext
-    - 'r-yulab.utils >=0.0.4'
+    - 'r-yulab.utils >=0.0.8'
   run:
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
-    - 'bioconductor-gosemsim >=2.26.0,<2.27.0'
-    - 'r-aplot >=0.1.4'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
+    - 'bioconductor-gosemsim >=2.28.0,<2.29.0'
+    - 'r-aplot >=0.2.1'
     - r-base
+    - 'r-ggfun >=0.1.3'
     - r-ggnewscale
     - r-ggplot2
     - r-ggraph
@@ -57,7 +60,7 @@ requirements:
     - r-rlang
     - r-scatterpie
     - r-shadowtext
-    - 'r-yulab.utils >=0.0.4'
+    - 'r-yulab.utils >=0.0.8'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-enrichtf/meta.yaml b/recipes/bioconductor-enrichtf/meta.yaml
index 497ae6659c32d..5637a45861a28 100644
--- a/recipes/bioconductor-enrichtf/meta.yaml
+++ b/recipes/bioconductor-enrichtf/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "enrichTF" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c3b22db2a149bf9e4cbe916173849722
+  md5: a88296c9418e41a8e66fccc276925471
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-enrichtf", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, webshot
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - 'bioconductor-jaspar2018 >=1.1.0,<1.2.0'
-    - 'bioconductor-motifmatchr >=1.22.0,<1.23.0'
-    - 'bioconductor-pipeframe >=1.16.0,<1.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-tfbstools >=1.38.0,<1.39.0'
+    - 'bioconductor-motifmatchr >=1.24.0,<1.25.0'
+    - 'bioconductor-pipeframe >=1.18.0,<1.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-tfbstools >=1.40.0,<1.41.0'
     - r-base
     - r-ggplot2
     - r-ggpubr
@@ -41,18 +42,18 @@ requirements:
     - r-r.utils
     - r-rmarkdown
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - 'bioconductor-jaspar2018 >=1.1.0,<1.2.0'
-    - 'bioconductor-motifmatchr >=1.22.0,<1.23.0'
-    - 'bioconductor-pipeframe >=1.16.0,<1.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-tfbstools >=1.38.0,<1.39.0'
+    - 'bioconductor-motifmatchr >=1.24.0,<1.25.0'
+    - 'bioconductor-pipeframe >=1.18.0,<1.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-tfbstools >=1.40.0,<1.41.0'
     - r-base
     - r-ggplot2
     - r-ggpubr
@@ -69,4 +70,3 @@ about:
   summary: 'Transcription Factors Enrichment Analysis'
   description: 'As transcription factors (TFs) play a crucial role in regulating the transcription process through binding on the genome alone or in a combinatorial manner, TF enrichment analysis is an efficient and important procedure to locate the candidate functional TFs from a set of experimentally defined regulatory regions. While it is commonly accepted that structurally related TFs may have similar binding preference to sequences (i.e. motifs) and one TF may have multiple motifs, TF enrichment analysis is much more challenging than motif enrichment analysis. Here we present a R package for TF enrichment analysis which combine motif enrichment with the PECA model.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
-
diff --git a/recipes/bioconductor-enrichviewnet/build.sh b/recipes/bioconductor-enrichviewnet/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-enrichviewnet/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-enrichviewnet/meta.yaml b/recipes/bioconductor-enrichviewnet/meta.yaml
new file mode 100644
index 0000000000000..853b3336dc8e7
--- /dev/null
+++ b/recipes/bioconductor-enrichviewnet/meta.yaml
@@ -0,0 +1,48 @@
+{% set version = "1.0.0" %}
+{% set name = "enrichViewNet" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 5b2eb51ee4f57abd3b77da182e7e5d1a
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-enrichviewnet", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, knitr, rmarkdown, testthat
+requirements:
+  host:
+    - 'bioconductor-enrichplot >=1.22.0,<1.23.0'
+    - 'bioconductor-rcy3 >=2.22.0,<2.23.0'
+    - r-base
+    - r-gprofiler2
+    - r-jsonlite
+    - r-strex
+    - r-stringr
+  run:
+    - 'bioconductor-enrichplot >=1.22.0,<1.23.0'
+    - 'bioconductor-rcy3 >=2.22.0,<2.23.0'
+    - r-base
+    - r-gprofiler2
+    - r-jsonlite
+    - r-strex
+    - r-stringr
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'From functional enrichment results to biological networks'
+  description: 'This package enables the visualization of functional enrichment results as network graphs. First the package enables the visualization of enrichment results, in a format corresponding to the one generated by gprofiler2, as a customizable Cytoscape network. In those networks, both gene datasets (GO terms/pathways/protein complexes) and genes associated to the datasets are represented as nodes. While the edges connect each gene to its dataset(s). The package also provides the option to create enrichment maps from functional enrichment results. Enrichment maps enable the visualization of enriched terms into a network with edges connecting overlapping genes.'
+
diff --git a/recipes/bioconductor-ensdb.hsapiens.v75/meta.yaml b/recipes/bioconductor-ensdb.hsapiens.v75/meta.yaml
index 035e577d1b943..e9d78eb695b76 100644
--- a/recipes/bioconductor-ensdb.hsapiens.v75/meta.yaml
+++ b/recipes/bioconductor-ensdb.hsapiens.v75/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.99.0" %}
 {% set name = "EnsDb.Hsapiens.v75" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 6c896475252903972bfc6c0eb0d8f334
 build:
-  number: 14
+  number: 15
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ensdb.hsapiens.v75", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
     - r-base
   run:
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ensdb.hsapiens.v79/meta.yaml b/recipes/bioconductor-ensdb.hsapiens.v79/meta.yaml
index 4c52d38262581..1ba0892011aad 100644
--- a/recipes/bioconductor-ensdb.hsapiens.v79/meta.yaml
+++ b/recipes/bioconductor-ensdb.hsapiens.v79/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.99.0" %}
 {% set name = "EnsDb.Hsapiens.v79" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 16b5629805c07649b2aa501d34fcc588
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ensdb.hsapiens.v79", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
     - r-base
   run:
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ensdb.hsapiens.v86/meta.yaml b/recipes/bioconductor-ensdb.hsapiens.v86/meta.yaml
index a94e97097dfe1..f91361ab9fb38 100644
--- a/recipes/bioconductor-ensdb.hsapiens.v86/meta.yaml
+++ b/recipes/bioconductor-ensdb.hsapiens.v86/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.99.0" %}
 {% set name = "EnsDb.Hsapiens.v86" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 0c9e52512ff6dbbbdb754c4d41149939
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ensdb.hsapiens.v86", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
     - r-base
   run:
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ensdb.mmusculus.v75/meta.yaml b/recipes/bioconductor-ensdb.mmusculus.v75/meta.yaml
index 14ba8a094c45b..53552d68e3b42 100644
--- a/recipes/bioconductor-ensdb.mmusculus.v75/meta.yaml
+++ b/recipes/bioconductor-ensdb.mmusculus.v75/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.99.0" %}
 {% set name = "EnsDb.Mmusculus.v75" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 081bf6f90ff77031b634b4fe32e00be8
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ensdb.mmusculus.v75", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
     - r-base
   run:
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ensdb.mmusculus.v79/meta.yaml b/recipes/bioconductor-ensdb.mmusculus.v79/meta.yaml
index 1035f94d66e52..b07f2e2eb5bd1 100644
--- a/recipes/bioconductor-ensdb.mmusculus.v79/meta.yaml
+++ b/recipes/bioconductor-ensdb.mmusculus.v79/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.99.0" %}
 {% set name = "EnsDb.Mmusculus.v79" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 28bbab743b0d2d550dbfa0bcd3274fad
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ensdb.mmusculus.v79", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
     - r-base
   run:
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ensdb.rnorvegicus.v75/meta.yaml b/recipes/bioconductor-ensdb.rnorvegicus.v75/meta.yaml
index ac9b5f465e9cf..a89441fa23d47 100644
--- a/recipes/bioconductor-ensdb.rnorvegicus.v75/meta.yaml
+++ b/recipes/bioconductor-ensdb.rnorvegicus.v75/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.99.0" %}
 {% set name = "EnsDb.Rnorvegicus.v75" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 40ff53b41aa6fad0d5bd15f9c6f3bad8
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ensdb.rnorvegicus.v75", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
     - r-base
   run:
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ensdb.rnorvegicus.v79/meta.yaml b/recipes/bioconductor-ensdb.rnorvegicus.v79/meta.yaml
index 711cbb93749c5..5646d093a9d17 100644
--- a/recipes/bioconductor-ensdb.rnorvegicus.v79/meta.yaml
+++ b/recipes/bioconductor-ensdb.rnorvegicus.v79/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.99.0" %}
 {% set name = "EnsDb.Rnorvegicus.v79" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 7d305bd0d1a073bd8c60063ae210a7a9
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ensdb.rnorvegicus.v79", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
     - r-base
   run:
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ensembldb/meta.yaml b/recipes/bioconductor-ensembldb/meta.yaml
index 137ffef63ab7e..c421d63cd8558 100644
--- a/recipes/bioconductor-ensembldb/meta.yaml
+++ b/recipes/bioconductor-ensembldb/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.24.0" %}
+{% set version = "2.26.0" %}
 {% set name = "ensembldb" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,47 +11,48 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 4d1be7f0e9d2ff9e4c473b891eec62de
+  md5: 0ad7a33ad9592f54e39d647195aa4c91
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ensembldb", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, EnsDb.Hsapiens.v86 (>= 0.99.8), testthat, BSgenome.Hsapiens.NCBI.GRCh38, ggbio (>= 1.24.0), Gviz (>= 1.20.0), rmarkdown, AnnotationHub
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-curl
     - r-dbi
     - 'r-rsqlite >=1.1'
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-curl
     - r-dbi
diff --git a/recipes/bioconductor-ensemblvep/meta.yaml b/recipes/bioconductor-ensemblvep/meta.yaml
index 0d0f14c7c5142..537285ab0b96e 100644
--- a/recipes/bioconductor-ensemblvep/meta.yaml
+++ b/recipes/bioconductor-ensemblvep/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "ensemblVEP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ad5be46f89b6fb698603bf2caa25bc19
+  md5: 378569d68f5d4973a7b16eb7cc2b9327
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ensemblvep", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit
 # SystemRequirements: Ensembl VEP (API version 105) and the Perl modules DBI and DBD::mysql must be installed. See the package README and Ensembl installation instructions: http://www.ensembl.org/info/docs/tools/vep/script/vep_download.html#installer
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-epialleler/build.sh b/recipes/bioconductor-epialleler/build.sh
index e157a50614263..c1d13421f5f1e 100644
--- a/recipes/bioconductor-epialleler/build.sh
+++ b/recipes/bioconductor-epialleler/build.sh
@@ -8,5 +8,4 @@ CXX=$CXX
 CXX98=$CXX
 CXX11=$CXX
 CXX14=$CXX" > ~/.R/Makevars
-sed -i.bak "s/PRIX64/PRIx64/g" src/rcpp_extract_patterns.cpp
-$R CMD INSTALL --build .
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-epialleler/meta.yaml b/recipes/bioconductor-epialleler/meta.yaml
index 8bd6e4a62deed..c3950d568d811 100644
--- a/recipes/bioconductor-epialleler/meta.yaml
+++ b/recipes/bioconductor-epialleler/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "epialleleR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,45 +11,42 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d3dd0e73e9e2e8ae91e9dda3b737c989
-  patches:
-    - patch
+  md5: cbe73c32dc61dac41266279db72e4bee
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-epialleler", max_pin="x.x") }}'
 # Suggests: RUnit, knitr, rmarkdown, ggplot2, ggstance, gridExtra
 # SystemRequirements: C++17, GNU make
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-bh
     - r-data.table
     - r-rcpp
-    - r-stringi
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-bh
     - r-data.table
     - r-rcpp
-    - r-stringi
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
@@ -60,6 +57,6 @@ test:
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: Artistic-2.0
-  summary: 'Fast, Epiallele-Aware Methylation Reporter'
-  description: 'Epialleles are specific DNA methylation patterns that are mitotically and/or meiotically inherited. This package calls hypermethylated epiallele frequencies at the level of genomic regions or individual cytosines in next-generation sequencing data using binary alignment map (BAM) files as an input. Other functionality includes extracting methylation patterns, computing the empirical cumulative distribution function for per-read beta values, and testing the significance of the association between epiallele methylation status and base frequencies at particular genomic positions (SNPs).'
+  summary: 'Fast, Epiallele-Aware Methylation Caller and Reporter'
+  description: 'Epialleles are specific DNA methylation patterns that are mitotically and/or meiotically inherited. This package calls and reports cytosine methylation as well as frequencies of hypermethylated epialleles at the level of genomic regions or individual cytosines in next-generation sequencing data using binary alignment map (BAM) files as an input. Among other things, this package can also extract methylation patterns and assess allele specificity of methylation.'
 
diff --git a/recipes/bioconductor-epialleler/patch b/recipes/bioconductor-epialleler/patch
deleted file mode 100644
index f3f903114ba14..0000000000000
--- a/recipes/bioconductor-epialleler/patch
+++ /dev/null
@@ -1,10 +0,0 @@
---- src/rcpp_extract_patterns.cpp	2022-11-10 21:46:48.107214115 +0100
-+++ src/rcpp_extract_patterns.cpp	2022-11-10 21:46:48.107214115 +0100
-@@ -1,5 +1,7 @@
- #include <Rcpp.h>
- #include <boost/container/flat_map.hpp>
-+#include <cinttypes>
-+
- // using namespace Rcpp;
- 
- // Scans trough reads and extracts methylation patterns from the reads that
diff --git a/recipes/bioconductor-epidecoder/meta.yaml b/recipes/bioconductor-epidecoder/meta.yaml
index bd29b9981ab70..c322d6f121c8b 100644
--- a/recipes/bioconductor-epidecoder/meta.yaml
+++ b/recipes/bioconductor-epidecoder/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "epidecodeR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 06413f62d44e93ed0fa687a6d81e00ff
+  md5: 409ed7c959818b7400944e1d20653f68
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-epidecoder", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-dplyr
     - r-envstats
@@ -31,9 +32,9 @@ requirements:
     - r-ggpubr
     - r-rstatix
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-dplyr
     - r-envstats
diff --git a/recipes/bioconductor-epidish/meta.yaml b/recipes/bioconductor-epidish/meta.yaml
index ecb9046de608f..5ae9b8411ac2a 100644
--- a/recipes/bioconductor-epidish/meta.yaml
+++ b/recipes/bioconductor-epidish/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.16.0" %}
+{% set version = "2.18.0" %}
 {% set name = "EpiDISH" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: facabe437e4fd3e9c6e8a7545bfc2c55
+  md5: db7b5d2165fad653dabc1bfd8faeab83
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-epidish", max_pin="x.x") }}'
   noarch: generic
 # Suggests: roxygen2, GEOquery, BiocStyle, knitr, rmarkdown, Biobase, testthat
 requirements:
diff --git a/recipes/bioconductor-epigenomix/meta.yaml b/recipes/bioconductor-epigenomix/meta.yaml
index cf59745b01a7e..44a46bcbbb2a0 100644
--- a/recipes/bioconductor-epigenomix/meta.yaml
+++ b/recipes/bioconductor-epigenomix/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "epigenomix" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 3bf32e589c4fc3ea302d75a821ce29e1
+  md5: eef6318b8b342675c1fdd4c99ed541e8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-epigenomix", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-beadarray >=2.50.0,<2.51.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-beadarray >=2.52.0,<2.53.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-mcmcpack
   run:
-    - 'bioconductor-beadarray >=2.50.0,<2.51.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-beadarray >=2.52.0,<2.53.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-mcmcpack
 test:
diff --git a/recipes/bioconductor-epigrahmm/meta.yaml b/recipes/bioconductor-epigrahmm/meta.yaml
index ccf466c267dbc..6ac28075e8219 100644
--- a/recipes/bioconductor-epigrahmm/meta.yaml
+++ b/recipes/bioconductor-epigrahmm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.2" %}
+{% set version = "1.10.0" %}
 {% set name = "epigraHMM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a095bb8f775608ebfc7ca1a8ea4e165e
+  md5: 1c86fa9edec93550acae520d84420b88
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-epigrahmm", max_pin="x.x") }}'
 # Suggests: testthat, knitr, rmarkdown, BiocStyle, BSgenome.Rnorvegicus.UCSC.rn4, gcapc, chromstaRData
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-bamsignals >=1.32.0,<1.33.0'
-    - 'bioconductor-csaw >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-greylistchip >=1.32.0,<1.33.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-bamsignals >=1.34.0,<1.35.0'
+    - 'bioconductor-csaw >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-greylistchip >=1.34.0,<1.35.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-ggplot2
@@ -48,19 +49,19 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-bamsignals >=1.32.0,<1.33.0'
-    - 'bioconductor-csaw >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-greylistchip >=1.32.0,<1.33.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-bamsignals >=1.34.0,<1.35.0'
+    - 'bioconductor-csaw >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-greylistchip >=1.34.0,<1.35.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-ggplot2
diff --git a/recipes/bioconductor-epimix.data/meta.yaml b/recipes/bioconductor-epimix.data/meta.yaml
index 508d3fb34bbbc..38d41a4d5a840 100644
--- a/recipes/bioconductor-epimix.data/meta.yaml
+++ b/recipes/bioconductor-epimix.data/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.2" %}
+{% set version = "1.4.0" %}
 {% set name = "EpiMix.data" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3234766b0bc549ab200604206a9ba5b8
+  md5: 52c386f6828945121acfca44eabb7827
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-epimix.data", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, knitr
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-epimix.data/post-link.sh b/recipes/bioconductor-epimix.data/post-link.sh
index 0bd1b17c93d35..62d257d916df8 100644
--- a/recipes/bioconductor-epimix.data/post-link.sh
+++ b/recipes/bioconductor-epimix.data/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "epimix.data-1.2.2"
+installBiocDataPackage.sh "epimix.data-1.4.0"
diff --git a/recipes/bioconductor-epimix/meta.yaml b/recipes/bioconductor-epimix/meta.yaml
index 6630fa2901172..2f933593dc46b 100644
--- a/recipes/bioconductor-epimix/meta.yaml
+++ b/recipes/bioconductor-epimix/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.1.2" %}
+{% set version = "1.4.0" %}
 {% set name = "EpiMix" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,32 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1f068a8ea3b2cd23bac159f19320d455
+  md5: d86305c56618b7f327d0068e09ad6558
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-epimix", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BiocStyle, clusterProfiler, karyoploteR, knitr, org.Hs.eg.db, regioneR, Seurat, survival, survminer, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit, BiocGenerics
+# Suggests: BiocStyle, clusterProfiler, GEOquery, karyoploteR, knitr, org.Hs.eg.db, regioneR, Seurat, survival, survminer, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit, BiocGenerics, multiMiR, miRBaseConverter
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-elmer.data >=2.24.0,<2.25.0'
-    - 'bioconductor-epimix.data >=1.2.0,<1.3.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-elmer.data >=2.26.0,<2.27.0'
+    - 'bioconductor-epimix.data >=1.4.0,<1.5.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-doparallel
@@ -55,22 +55,21 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-elmer.data >=2.24.0,<2.25.0'
-    - 'bioconductor-epimix.data >=1.2.0,<1.3.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-elmer.data >=2.26.0,<2.27.0'
+    - 'bioconductor-epimix.data >=1.4.0,<1.5.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-doparallel
diff --git a/recipes/bioconductor-epimutacions/meta.yaml b/recipes/bioconductor-epimutacions/meta.yaml
index 2009149f65299..dec1d85892e1b 100644
--- a/recipes/bioconductor-epimutacions/meta.yaml
+++ b/recipes/bioconductor-epimutacions/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.1" %}
 {% set name = "epimutacions" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,41 +11,42 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: df7b334f2a1aa9a8ad23679c25578eda
+  md5: 73fdaf9db5e5d035601282d6e5d832fd
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-epimutacions", max_pin="x.x") }}'
 # Suggests: testthat, knitr, rmarkdown, BiocStyle, a4Base, kableExtra, methods, grDevices
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-bumphunter >=1.42.0,<1.43.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-epimutacionsdata >=1.4.0,<1.5.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-bumphunter >=1.44.0,<1.45.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-epimutacionsdata >=1.6.0,<1.7.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
     - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0'
     - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0'
     - 'bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylationepicmanifest >=0.3.0,<0.4.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg18.knowngene >=3.2.0,<3.3.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.17.0,<3.18.0'
+    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.18.0,<3.19.0'
     - r-base
     - r-ggplot2
     - r-ggrepel
@@ -59,32 +60,32 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-bumphunter >=1.42.0,<1.43.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-epimutacionsdata >=1.4.0,<1.5.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-bumphunter >=1.44.0,<1.45.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-epimutacionsdata >=1.6.0,<1.7.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
     - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0'
     - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0'
     - 'bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylationepicmanifest >=0.3.0,<0.4.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg18.knowngene >=3.2.0,<3.3.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.17.0,<3.18.0'
+    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.18.0,<3.19.0'
     - r-base
     - r-ggplot2
     - r-ggrepel
diff --git a/recipes/bioconductor-epimutacionsdata/meta.yaml b/recipes/bioconductor-epimutacionsdata/meta.yaml
index 9fe6ecbb04437..761c0fbdf4067 100644
--- a/recipes/bioconductor-epimutacionsdata/meta.yaml
+++ b/recipes/bioconductor-epimutacionsdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "epimutacionsData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 162b5aaa6a5f6df2528dce4285efdea4
+  md5: e2681ab8096fd0f2b7e5d8ed68928280
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-epimutacionsdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, BiocStyle, knitr, ExperimentHub, minfi
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-epimutacionsdata/post-link.sh b/recipes/bioconductor-epimutacionsdata/post-link.sh
index 0989eb175b6ad..04b4600843e28 100644
--- a/recipes/bioconductor-epimutacionsdata/post-link.sh
+++ b/recipes/bioconductor-epimutacionsdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "epimutacionsdata-1.4.0"
+installBiocDataPackage.sh "epimutacionsdata-1.6.0"
diff --git a/recipes/bioconductor-epinem/meta.yaml b/recipes/bioconductor-epinem/meta.yaml
index dfbe44e395c46..704d6f0117daf 100644
--- a/recipes/bioconductor-epinem/meta.yaml
+++ b/recipes/bioconductor-epinem/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "epiNEM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d3c178dac61b79d58666db49073ead75
+  md5: 03702ef94f047496994ebaf19f750787
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-epinem", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, RUnit, BiocGenerics, STRINGdb, devtools, rmarkdown, GOSemSim, AnnotationHub, org.Sc.sgd.db, BiocStyle
 requirements:
   host:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-minet >=3.58.0,<3.59.0'
-    - 'bioconductor-mnem >=1.16.0,<1.17.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-minet >=3.60.0,<3.61.0'
+    - 'bioconductor-mnem >=1.18.0,<1.19.0'
     - r-base
     - r-boolnet
     - r-e1071
@@ -35,9 +36,9 @@ requirements:
     - r-pcalg
     - r-rcolorbrewer
   run:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-minet >=3.58.0,<3.59.0'
-    - 'bioconductor-mnem >=1.16.0,<1.17.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-minet >=3.60.0,<3.61.0'
+    - 'bioconductor-mnem >=1.18.0,<1.19.0'
     - r-base
     - r-boolnet
     - r-e1071
diff --git a/recipes/bioconductor-epistack/meta.yaml b/recipes/bioconductor-epistack/meta.yaml
index 2765821eb8517..3dab4be583771 100644
--- a/recipes/bioconductor-epistack/meta.yaml
+++ b/recipes/bioconductor-epistack/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "epistack" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c555b4279771d26c7cfe9334d694fcbb
+  md5: 7d06dbae71f93e2c3cb91ba3d16fa916
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-epistack", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown, EnrichedHeatmap, biomaRt, rtracklayer, covr, vdiffr, magick
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-plotrix
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-plotrix
 test:
diff --git a/recipes/bioconductor-epistasisga/meta.yaml b/recipes/bioconductor-epistasisga/meta.yaml
index fa6e9e8a58c30..f7bb792a8c68a 100644
--- a/recipes/bioconductor-epistasisga/meta.yaml
+++ b/recipes/bioconductor-epistasisga/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.1" %}
+{% set version = "1.4.0" %}
 {% set name = "epistasisGA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,16 +11,17 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 62ed9886878fc33fd72be12e391cccee
+  md5: 79635d9683f002813e51fa3c17e49b39
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-epistasisga", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, rmarkdown, magrittr, kableExtra, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-batchtools
     - r-bh
@@ -36,7 +37,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-batchtools
     - r-bh
diff --git a/recipes/bioconductor-epitxdb.hs.hg38/meta.yaml b/recipes/bioconductor-epitxdb.hs.hg38/meta.yaml
index a8255a97fe06e..9edb215bfcecc 100644
--- a/recipes/bioconductor-epitxdb.hs.hg38/meta.yaml
+++ b/recipes/bioconductor-epitxdb.hs.hg38/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.7" %}
 {% set name = "EpiTxDb.Hs.hg38" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: e30af95f285788a9777a8207a8ef73a9
 build:
-  number: 6
+  number: 7
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-epitxdb.hs.hg38", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, Modstrings, rtracklayer
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-epitxdb >=1.12.0,<1.13.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-epitxdb >=1.14.0,<1.15.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-epitxdb >=1.12.0,<1.13.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-epitxdb >=1.14.0,<1.15.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-epitxdb.mm.mm10/meta.yaml b/recipes/bioconductor-epitxdb.mm.mm10/meta.yaml
index fe37e709b6bc8..526e3d97d4b4e 100644
--- a/recipes/bioconductor-epitxdb.mm.mm10/meta.yaml
+++ b/recipes/bioconductor-epitxdb.mm.mm10/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.6" %}
 {% set name = "EpiTxDb.Mm.mm10" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 518e4967f7f038e3cbf2865b74dc4f1b
 build:
-  number: 6
+  number: 7
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-epitxdb.mm.mm10", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-epitxdb >=1.12.0,<1.13.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-epitxdb >=1.14.0,<1.15.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-epitxdb >=1.12.0,<1.13.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-epitxdb >=1.14.0,<1.15.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-epitxdb.sc.saccer3/meta.yaml b/recipes/bioconductor-epitxdb.sc.saccer3/meta.yaml
index f0df4cc359c84..69da19dba72fc 100644
--- a/recipes/bioconductor-epitxdb.sc.saccer3/meta.yaml
+++ b/recipes/bioconductor-epitxdb.sc.saccer3/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.5" %}
 {% set name = "EpiTxDb.Sc.sacCer3" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 6d9e5f37e5dcb60e890d99d80fddda00
 build:
-  number: 4
+  number: 5
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-epitxdb.sc.saccer3", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, Modstrings, rtracklayer
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-epitxdb >=1.12.0,<1.13.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-epitxdb >=1.14.0,<1.15.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-epitxdb >=1.12.0,<1.13.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-epitxdb >=1.14.0,<1.15.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-epitxdb/meta.yaml b/recipes/bioconductor-epitxdb/meta.yaml
index faa034bbfa391..9120d238c9984 100644
--- a/recipes/bioconductor-epitxdb/meta.yaml
+++ b/recipes/bioconductor-epitxdb/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "EpiTxDb" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 55ab42b455431e070e058b65a43784da
+  md5: a693697bcccd27be6e57c304438d94a6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-epitxdb", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, httptest, AnnotationHub, ensembldb, ggplot2, EpiTxDb.Hs.hg38, BSgenome.Hsapiens.UCSC.hg38, BSgenome.Scerevisiae.UCSC.sacCer3, TxDb.Hsapiens.UCSC.hg38.knownGene
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-modstrings >=1.16.0,<1.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-trnadbimport >=1.18.0,<1.19.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-modstrings >=1.18.0,<1.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-trnadbimport >=1.20.0,<1.21.0'
     - r-base
     - r-curl
     - r-dbi
@@ -39,17 +40,17 @@ requirements:
     - r-rsqlite
     - r-xml2
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-modstrings >=1.16.0,<1.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-trnadbimport >=1.18.0,<1.19.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-modstrings >=1.18.0,<1.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-trnadbimport >=1.20.0,<1.21.0'
     - r-base
     - r-curl
     - r-dbi
diff --git a/recipes/bioconductor-epivizr/meta.yaml b/recipes/bioconductor-epivizr/meta.yaml
index 556f6962606bd..51bbf203d8997 100644
--- a/recipes/bioconductor-epivizr/meta.yaml
+++ b/recipes/bioconductor-epivizr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.30.0" %}
+{% set version = "2.32.0" %}
 {% set name = "epivizr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,32 +11,33 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 710f534004dc7cbf1364255f3b42ad0d
+  md5: aaf997f0c4eccf72d795d79a3ebd7bfe
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-epivizr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, roxygen2, knitr, Biobase, SummarizedExperiment, antiProfilesData, hgu133plus2.db, Mus.musculus, BiocStyle, minfi, rmarkdown
 requirements:
   host:
-    - 'bioconductor-bumphunter >=1.42.0,<1.43.0'
-    - 'bioconductor-epivizrdata >=1.28.0,<1.29.0'
-    - 'bioconductor-epivizrserver >=1.28.0,<1.29.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bumphunter >=1.44.0,<1.45.0'
+    - 'bioconductor-epivizrdata >=1.30.0,<1.31.0'
+    - 'bioconductor-epivizrserver >=1.30.0,<1.31.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-bumphunter >=1.42.0,<1.43.0'
-    - 'bioconductor-epivizrdata >=1.28.0,<1.29.0'
-    - 'bioconductor-epivizrserver >=1.28.0,<1.29.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bumphunter >=1.44.0,<1.45.0'
+    - 'bioconductor-epivizrdata >=1.30.0,<1.31.0'
+    - 'bioconductor-epivizrserver >=1.30.0,<1.31.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-epivizrchart/meta.yaml b/recipes/bioconductor-epivizrchart/meta.yaml
index 6cc148b0b6716..f66a753816ffa 100644
--- a/recipes/bioconductor-epivizrchart/meta.yaml
+++ b/recipes/bioconductor-epivizrchart/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "epivizrChart" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: baf134b11bf7e3f3957f76f35091b317
+  md5: 076ebf7f9141cb71df0867f480ff960c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-epivizrchart", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, roxygen2, knitr, Biobase, GenomicRanges, S4Vectors, IRanges, SummarizedExperiment, antiProfilesData, hgu133plus2.db, Mus.musculus, BiocStyle, Homo.sapiens, shiny, minfi, Rsamtools, rtracklayer, RColorBrewer, magrittr, AnnotationHub
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-epivizrdata >=1.28.0,<1.29.0'
-    - 'bioconductor-epivizrserver >=1.28.0,<1.29.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-epivizrdata >=1.30.0,<1.31.0'
+    - 'bioconductor-epivizrserver >=1.30.0,<1.31.0'
     - r-base
     - r-htmltools
     - r-rjson
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-epivizrdata >=1.28.0,<1.29.0'
-    - 'bioconductor-epivizrserver >=1.28.0,<1.29.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-epivizrdata >=1.30.0,<1.31.0'
+    - 'bioconductor-epivizrserver >=1.30.0,<1.31.0'
     - r-base
     - r-htmltools
     - r-rjson
diff --git a/recipes/bioconductor-epivizrdata/meta.yaml b/recipes/bioconductor-epivizrdata/meta.yaml
index 67c2c1574e7d4..412409f2896f3 100644
--- a/recipes/bioconductor-epivizrdata/meta.yaml
+++ b/recipes/bioconductor-epivizrdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "epivizrData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,38 +11,39 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5d8c2385e4c9f9a37c1f8314bf817a2f
+  md5: aa9cf42fdbb0ad293964de33fc62e27a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-epivizrdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, roxygen2, bumphunter, hgu133plus2.db, Mus.musculus, TxDb.Mmusculus.UCSC.mm10.knownGene, rjson, knitr, rmarkdown, BiocStyle, EnsDb.Mmusculus.v79, AnnotationHub, rtracklayer, utils, RMySQL, DBI, matrixStats
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-epivizrserver >=1.28.0,<1.29.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-organismdbi >=1.42.0,<1.43.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-epivizrserver >=1.30.0,<1.31.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-organismdbi >=1.44.0,<1.45.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-epivizrserver >=1.28.0,<1.29.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-organismdbi >=1.42.0,<1.43.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-epivizrserver >=1.30.0,<1.31.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-organismdbi >=1.44.0,<1.45.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-epivizrserver/meta.yaml b/recipes/bioconductor-epivizrserver/meta.yaml
index 52893be238b8b..7b384efc68bd6 100644
--- a/recipes/bioconductor-epivizrserver/meta.yaml
+++ b/recipes/bioconductor-epivizrserver/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "epivizrServer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6d78bdc9e29069b92d87d127c49608c8
+  md5: 4bc67106aa169616232174c422fb6e2b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-epivizrserver", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, BiocStyle
 requirements:
diff --git a/recipes/bioconductor-epivizrstandalone/meta.yaml b/recipes/bioconductor-epivizrstandalone/meta.yaml
index 71477decd623c..fba6c056e868e 100644
--- a/recipes/bioconductor-epivizrstandalone/meta.yaml
+++ b/recipes/bioconductor-epivizrstandalone/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "epivizrStandalone" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1948048074aed3f5221e8cdaa4ea1fbb
+  md5: aa34f18a7a4f4340f2e4a0ecc46af0a2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-epivizrstandalone", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, OrganismDbi (>= 1.13.9), Mus.musculus, Biobase, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-epivizr >=2.30.0,<2.31.0'
-    - 'bioconductor-epivizrserver >=1.28.0,<1.29.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-epivizr >=2.32.0,<2.33.0'
+    - 'bioconductor-epivizrserver >=1.30.0,<1.31.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-git2r
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-epivizr >=2.30.0,<2.31.0'
-    - 'bioconductor-epivizrserver >=1.28.0,<1.29.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-epivizr >=2.32.0,<2.33.0'
+    - 'bioconductor-epivizrserver >=1.30.0,<1.31.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-git2r
 test:
diff --git a/recipes/bioconductor-erccdashboard/meta.yaml b/recipes/bioconductor-erccdashboard/meta.yaml
index fb60c3517521d..f0d714a1af896 100644
--- a/recipes/bioconductor-erccdashboard/meta.yaml
+++ b/recipes/bioconductor-erccdashboard/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "erccdashboard" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: b74db4e015a32aea7a4a5b691d79b6d3
+  md5: fa211269012a775dcdc114f3eb0282bb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-erccdashboard", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
     - 'r-ggplot2 >=2.1.0'
     - r-gplots
@@ -36,9 +37,9 @@ requirements:
     - r-scales
     - r-stringr
   run:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
     - 'r-ggplot2 >=2.1.0'
     - r-gplots
diff --git a/recipes/bioconductor-erma/meta.yaml b/recipes/bioconductor-erma/meta.yaml
index a57e31ec5e0c0..18cea096ef670 100644
--- a/recipes/bioconductor-erma/meta.yaml
+++ b/recipes/bioconductor-erma/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "erma" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,44 +11,45 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 5ec82c451352c22d4b909caab6002683
+  md5: 38679c439fbeb31db81c90c90ba4f79d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-erma", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, BiocStyle, knitr, GO.db, png, DT, doParallel
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfiles >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfiles >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-shiny
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfiles >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfiles >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-shiny
diff --git a/recipes/bioconductor-erssa/meta.yaml b/recipes/bioconductor-erssa/meta.yaml
index 047e3402fbd51..aa706e6ec05ae 100644
--- a/recipes/bioconductor-erssa/meta.yaml
+++ b/recipes/bioconductor-erssa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "ERSSA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1388c9ab46a0d5d765a0a8871bcd5387
+  md5: 160e82bdb1b7af9f6452d4767a7e8a1a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-erssa", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
+    - 'bioconductor-apeglm >=1.24.0,<1.25.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
     - r-base
     - 'r-ggplot2 >=3.0.0'
     - 'r-plyr >=1.8.4'
     - 'r-rcolorbrewer >=1.1-2'
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
+    - 'bioconductor-apeglm >=1.24.0,<1.25.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
     - r-base
     - 'r-ggplot2 >=3.0.0'
     - 'r-plyr >=1.8.4'
diff --git a/recipes/bioconductor-esatac/meta.yaml b/recipes/bioconductor-esatac/meta.yaml
index 8ae1df64adff7..6959b5764686a 100644
--- a/recipes/bioconductor-esatac/meta.yaml
+++ b/recipes/bioconductor-esatac/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "esATAC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4672f9eba4a66406890a4cfdf9f552dd
+  md5: 6ea63da6e75365243df878d55d6b39f9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-esatac", max_pin="x.x") }}'
 # Suggests: BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, testthat, webshot, prettydoc
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-chipseeker >=1.36.0,<1.37.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-chipseeker >=1.38.0,<1.39.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - 'bioconductor-jaspar2018 >=1.1.0,<1.2.0'
-    - 'bioconductor-motifmatchr >=1.22.0,<1.23.0'
-    - 'bioconductor-pipeframe >=1.16.0,<1.17.0'
-    - 'bioconductor-rbowtie2 >=2.6.0,<2.7.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
-    - 'bioconductor-tfbstools >=1.38.0,<1.39.0'
+    - 'bioconductor-motifmatchr >=1.24.0,<1.25.0'
+    - 'bioconductor-pipeframe >=1.18.0,<1.19.0'
+    - 'bioconductor-rbowtie2 >=2.8.0,<2.9.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - 'bioconductor-tfbstools >=1.40.0,<1.41.0'
     - r-base
     - r-biocmanager
     - r-corrplot
@@ -57,26 +58,26 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-chipseeker >=1.36.0,<1.37.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-chipseeker >=1.38.0,<1.39.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - 'bioconductor-jaspar2018 >=1.1.0,<1.2.0'
-    - 'bioconductor-motifmatchr >=1.22.0,<1.23.0'
-    - 'bioconductor-pipeframe >=1.16.0,<1.17.0'
-    - 'bioconductor-rbowtie2 >=2.6.0,<2.7.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
-    - 'bioconductor-tfbstools >=1.38.0,<1.39.0'
+    - 'bioconductor-motifmatchr >=1.24.0,<1.25.0'
+    - 'bioconductor-pipeframe >=1.18.0,<1.19.0'
+    - 'bioconductor-rbowtie2 >=2.8.0,<2.9.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - 'bioconductor-tfbstools >=1.40.0,<1.41.0'
     - r-base
     - r-biocmanager
     - r-corrplot
diff --git a/recipes/bioconductor-escape/meta.yaml b/recipes/bioconductor-escape/meta.yaml
index 48b004148c4b3..86ec8bba522ff 100644
--- a/recipes/bioconductor-escape/meta.yaml
+++ b/recipes/bioconductor-escape/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "escape" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 52dc55acb0a04f9030f1aae725e57af8
+  md5: e3dc22e072190e21938689fc0f3ab112
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-escape", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Seurat, SeuratObject, knitr, rmarkdown, markdown, BiocStyle, testthat, dittoSeq (>= 1.1.2)
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-gsva >=1.48.0,<1.49.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-ucell >=2.4.0,<2.5.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-gsva >=1.50.0,<1.51.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-ucell >=2.6.0,<2.7.0'
     - r-base
     - r-broom
     - r-data.table
@@ -41,13 +42,13 @@ requirements:
     - r-rlang
     - r-stringr
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-gsva >=1.48.0,<1.49.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-ucell >=2.4.0,<2.5.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-gsva >=1.50.0,<1.51.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-ucell >=2.6.0,<2.7.0'
     - r-base
     - r-broom
     - r-data.table
diff --git a/recipes/bioconductor-escher/meta.yaml b/recipes/bioconductor-escher/meta.yaml
index 758e49c0a1c5d..e8649e5391cf2 100644
--- a/recipes/bioconductor-escher/meta.yaml
+++ b/recipes/bioconductor-escher/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "escheR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: df1ed86f7963992371c853e9b05284b7
+  md5: ed2586d2e42f89db85790889863421b8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-escher", max_pin="x.x") }}'
   noarch: generic
-# Suggests: STexampleData, knitr, rmarkdown, BiocStyle
+# Suggests: STexampleData, BumpyMatrix, knitr, rmarkdown, BiocStyle, ggpubr, scran, scater, scuttle, Seurat
 requirements:
   host:
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-spatiallibd >=1.12.0,<1.13.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-rlang
   run:
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-spatiallibd >=1.12.0,<1.13.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-rlang
diff --git a/recipes/bioconductor-esetvis/meta.yaml b/recipes/bioconductor-esetvis/meta.yaml
index 119e0e8661341..7ce7e35074dd0 100644
--- a/recipes/bioconductor-esetvis/meta.yaml
+++ b/recipes/bioconductor-esetvis/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.1" %}
+{% set version = "1.28.0" %}
 {% set name = "esetVis" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e6f18d6b3474a5018f138bafe1324542
+  md5: 2edbf6b1764a5ebfdcefaf7a8b6c247d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-esetvis", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ggplot2, ggvis, rbokeh, ggrepel, knitr, rmarkdown, ALL, hgu95av2.db, AnnotationDbi, pander, SummarizedExperiment, GO.db
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-mlp >=1.48.0,<1.49.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-mlp >=1.50.0,<1.51.0'
     - r-base
     - r-hexbin
     - r-mass
     - r-mpm
     - r-rtsne
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-mlp >=1.48.0,<1.49.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-mlp >=1.50.0,<1.51.0'
     - r-base
     - r-hexbin
     - r-mass
diff --git a/recipes/bioconductor-estrogen/meta.yaml b/recipes/bioconductor-estrogen/meta.yaml
index c188aec2e2eb2..cd11513496376 100644
--- a/recipes/bioconductor-estrogen/meta.yaml
+++ b/recipes/bioconductor-estrogen/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "estrogen" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c7f687b7e46c1e224e9008143926f12e
+  md5: 41a3321678d1a9cb057e979d675f0cee
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-estrogen", max_pin="x.x") }}'
   noarch: generic
-# Suggests: affy, hgu95av2.db, hgu95av2cdf, vsn, knitr
+# Suggests: affy, hgu95av2.db, hgu95av2cdf, vsn, knitr, genefilter
 requirements:
   host:
     - r-base
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-estrogen/post-link.sh b/recipes/bioconductor-estrogen/post-link.sh
index 422fccdd666d7..92a917b9ef078 100644
--- a/recipes/bioconductor-estrogen/post-link.sh
+++ b/recipes/bioconductor-estrogen/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "estrogen-1.46.0"
+installBiocDataPackage.sh "estrogen-1.48.0"
diff --git a/recipes/bioconductor-etec16s/meta.yaml b/recipes/bioconductor-etec16s/meta.yaml
index bfe9834af0a45..e4180b711643d 100644
--- a/recipes/bioconductor-etec16s/meta.yaml
+++ b/recipes/bioconductor-etec16s/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "etec16s" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: b2540d5e5287458a7fbec76b5656d3c6
+  md5: 86353b5f2f77274b883120dc043f8ce5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-etec16s", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-metagenomeseq >=1.42.0,<1.43.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-metagenomeseq >=1.43.0,<1.44.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-metagenomeseq >=1.42.0,<1.43.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-metagenomeseq >=1.43.0,<1.44.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-etec16s/post-link.sh b/recipes/bioconductor-etec16s/post-link.sh
index d48158fae1247..7ab2be62ab9c5 100644
--- a/recipes/bioconductor-etec16s/post-link.sh
+++ b/recipes/bioconductor-etec16s/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "etec16s-1.28.0"
+installBiocDataPackage.sh "etec16s-1.30.0"
diff --git a/recipes/bioconductor-eudysbiome/meta.yaml b/recipes/bioconductor-eudysbiome/meta.yaml
index bfc0c4700fa42..c4d7c109e3260 100644
--- a/recipes/bioconductor-eudysbiome/meta.yaml
+++ b/recipes/bioconductor-eudysbiome/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "eudysbiome" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 491deafab7090ce11e0eaac79537dc15
+  md5: 76023a8328d58f7d5b783679a08c7ea8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-eudysbiome", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-plyr
     - r-r.utils
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-plyr
     - r-r.utils
diff --git a/recipes/bioconductor-eupathdb/meta.yaml b/recipes/bioconductor-eupathdb/meta.yaml
index 0a9428b37d14f..c302fc335cb08 100644
--- a/recipes/bioconductor-eupathdb/meta.yaml
+++ b/recipes/bioconductor-eupathdb/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.1" %}
 {% set name = "EuPathDB" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,33 +13,34 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 1451c3ab6c224d9a4cfbdf27dc5c2680
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-eupathdb", max_pin="x.x") }}'
   noarch: generic
 # Suggests: dplyr, knitr, BiocStyle, rmarkdown, jsonlite
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-annotationhubdata >=1.30.0,<1.31.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-annotationhubdata >=1.32.0,<1.33.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - 'bioconductor-genomeinfodbdata >=1.2.0,<1.3.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-biocmanager
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-annotationhubdata >=1.30.0,<1.31.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-annotationhubdata >=1.32.0,<1.33.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - 'bioconductor-genomeinfodbdata >=1.2.0,<1.3.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-biocmanager
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-evaluomer/meta.yaml b/recipes/bioconductor-evaluomer/meta.yaml
index 66d0c27267921..d60206052a04d 100644
--- a/recipes/bioconductor-evaluomer/meta.yaml
+++ b/recipes/bioconductor-evaluomer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "evaluomeR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e64f5dc7c769522b12dff9613a3c0e65
+  md5: 2cee372b9bb28916d6ab543be8eca9b2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-evaluomer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, magrittr
 requirements:
   host:
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-class
     - 'r-cluster >=2.0.9'
@@ -41,8 +42,8 @@ requirements:
     - r-rdpack
     - r-reshape2
   run:
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-class
     - 'r-cluster >=2.0.9'
diff --git a/recipes/bioconductor-eventpointer/meta.yaml b/recipes/bioconductor-eventpointer/meta.yaml
index 2077e89eacca9..5bf12d43a71a1 100644
--- a/recipes/bioconductor-eventpointer/meta.yaml
+++ b/recipes/bioconductor-eventpointer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.8.0" %}
+{% set version = "3.10.0" %}
 {% set name = "EventPointer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,32 +11,33 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f97dd94868c28a966269c717e4cfccff
+  md5: d25561e0288a54ed43c823b371941972
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-eventpointer", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics, dplyr, kableExtra
 requirements:
   host:
-    - 'bioconductor-affxparser >=1.72.0,<1.73.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-sgseq >=1.34.0,<1.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tximport >=1.28.0,<1.29.0'
+    - 'bioconductor-affxparser >=1.74.0,<1.75.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-sgseq >=1.36.0,<1.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tximport >=1.30.0,<1.31.0'
     - r-abind
     - r-base
     - r-cobs
@@ -57,23 +58,23 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-affxparser >=1.72.0,<1.73.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-sgseq >=1.34.0,<1.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tximport >=1.28.0,<1.29.0'
+    - 'bioconductor-affxparser >=1.74.0,<1.75.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-sgseq >=1.36.0,<1.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tximport >=1.30.0,<1.31.0'
     - r-abind
     - r-base
     - r-cobs
diff --git a/recipes/bioconductor-ewce/meta.yaml b/recipes/bioconductor-ewce/meta.yaml
index e63814309ad73..f085f9b01d230 100644
--- a/recipes/bioconductor-ewce/meta.yaml
+++ b/recipes/bioconductor-ewce/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.2" %}
+{% set version = "1.10.2" %}
 {% set name = "EWCE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0c8b7db118292d3cbd6c01c1fd6e15d7
+  md5: b00b3feb36956603c46e6de1f03e9c09
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ewce", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rworkflows, remotes, knitr, BiocStyle, rmarkdown, testthat (>= 3.0.0), readxl, memoise, markdown, sctransform, DESeq2, MAST, DelayedMatrixStats, ggdendro, scales, patchwork
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-ewcedata >=1.8.0,<1.9.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-orthogene >=1.6.0,<1.7.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-ewcedata >=1.10.0,<1.11.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-orthogene >=1.8.0,<1.9.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -38,13 +39,13 @@ requirements:
     - 'r-rnomni >=1.0'
     - r-stringr
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-ewcedata >=1.8.0,<1.9.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-orthogene >=1.6.0,<1.7.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-ewcedata >=1.10.0,<1.11.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-orthogene >=1.8.0,<1.9.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-dplyr
diff --git a/recipes/bioconductor-ewcedata/meta.yaml b/recipes/bioconductor-ewcedata/meta.yaml
index fe81c8bb10775..e46f489867173 100644
--- a/recipes/bioconductor-ewcedata/meta.yaml
+++ b/recipes/bioconductor-ewcedata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "ewceData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3107bac6cd0fb07a4cba3ad59cabb665
+  md5: d2ee91be35e2c5433ce16e94717c50e7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ewcedata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, ggplot2, cowplot, rmarkdown, markdown, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ewcedata/post-link.sh b/recipes/bioconductor-ewcedata/post-link.sh
index c5cd6c05609bd..16e7f83675a3c 100644
--- a/recipes/bioconductor-ewcedata/post-link.sh
+++ b/recipes/bioconductor-ewcedata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "ewcedata-1.8.0"
+installBiocDataPackage.sh "ewcedata-1.10.0"
diff --git a/recipes/bioconductor-excluderanges/meta.yaml b/recipes/bioconductor-excluderanges/meta.yaml
index 29c4ecd94fd1e..01959646c16da 100644
--- a/recipes/bioconductor-excluderanges/meta.yaml
+++ b/recipes/bioconductor-excluderanges/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.8" %}
 {% set name = "excluderanges" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 2ec19df8a51df1900a339f7f505cd5fa
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-excluderanges", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, RefManageR, rmarkdown, ggridges, httr, readr, pheatmap, rtracklayer, AnnotationHub
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-excluster/meta.yaml b/recipes/bioconductor-excluster/meta.yaml
index e77fe8a171463..d71771d5759d4 100644
--- a/recipes/bioconductor-excluster/meta.yaml
+++ b/recipes/bioconductor-excluster/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "ExCluster" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8cf0ecfe19ff1a9a9a461ff9d9738cfb
+  md5: 2f60d612945a7f431831ce690d01d042
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-excluster", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsubread >=2.14.0,<2.15.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsubread >=2.16.0,<2.17.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-matrixstats
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsubread >=2.14.0,<2.15.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsubread >=2.16.0,<2.17.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-matrixstats
 test:
diff --git a/recipes/bioconductor-eximir/meta.yaml b/recipes/bioconductor-eximir/meta.yaml
index a78f2e6588bfa..5aea5abeb29f4 100644
--- a/recipes/bioconductor-eximir/meta.yaml
+++ b/recipes/bioconductor-eximir/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.42.0" %}
+{% set version = "2.44.0" %}
 {% set name = "ExiMiR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5339767954f9bdc5eb05a5e62529d80f
+  md5: a68c067ab91567287317a760f9e4c738
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-eximir", max_pin="x.x") }}'
   noarch: generic
 # Suggests: mirna10cdf
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-affyio >=1.70.0,<1.71.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-affyio >=1.72.0,<1.73.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-affyio >=1.70.0,<1.71.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-affyio >=1.72.0,<1.73.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-exomecopy/meta.yaml b/recipes/bioconductor-exomecopy/meta.yaml
index f6a9d1547655d..31d7b9c3949b6 100644
--- a/recipes/bioconductor-exomecopy/meta.yaml
+++ b/recipes/bioconductor-exomecopy/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "exomeCopy" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 589525e05086f9d2387c287beb8c35e7
+  md5: 068f1f0cb675297a1b7940330fae0cbe
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-exomecopy", max_pin="x.x") }}'
 # Suggests: Biostrings
 requirements:
   host:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
   build:
     - {{ compiler('c') }}
@@ -41,11 +42,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'GPL (>= 2)'
+  license: 'GPL-3.0-or-later'
   summary: 'Copy number variant detection from exome sequencing read depth'
   description: 'Detection of copy number variants (CNV) from exome sequencing samples, including unpaired samples.  The package implements a hidden Markov model which uses positional covariates, such as background read depth and GC-content, to simultaneously normalize and segment the samples into regions of constant copy count.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:exomecopy
     - doi:10.2202/1544-6115.1732
diff --git a/recipes/bioconductor-exomepeak2/meta.yaml b/recipes/bioconductor-exomepeak2/meta.yaml
index 7c62eee295e28..c86fb924cebde 100644
--- a/recipes/bioconductor-exomepeak2/meta.yaml
+++ b/recipes/bioconductor-exomepeak2/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.3" %}
 {% set name = "exomePeak2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,50 +11,51 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0281b3cf39ab0e2dd661c6b95b899a9a
+  md5: 078608012fb7c2dc3a60d02a4e2fcbbc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-exomepeak2", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr, rmarkdown
+# Suggests: knitr, rmarkdown, BiocManager, BSgenome.Hsapiens.UCSC.hg19
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-magrittr
     - r-mclust
     - r-speedglm
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-magrittr
@@ -67,5 +68,5 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: Artistic-2.0
   summary: 'Peak Calling and differential analysis for MeRIP-Seq'
-  description: 'exomePeak2 provides peak detection and differential methylation for Methylated RNA Immunoprecipitation Sequencing (MeRIP-Seq) data. MeRIP-Seq is a commonly applied sequencing assay that measures the location and abundance of RNA modification sites under specific cellular conditions. In practice, the technique is sensitive to PCR amplification biases commonly found in NGS data. In addition, the efficiency of immunoprecipitation often varies between different IP samples. exomePeak2 can perform peak calling and differential analysis independent of GC content bias and IP efficiency changes.'
+  description: 'exomePeak2 provides peak detection and differential methylation for Methylated RNA Immunoprecipitation Sequencing (MeRIP-Seq) data. MeRIP-Seq is a commonly applied sequencing assay that measures the location and abundance of RNA modification sites under specific cellular conditions. The technique is sensitive to PCR amplification biases commonly found in NGS data. In addition, the efficiency of immunoprecipitation often varies between different IP samples. exomePeak2 can perform peak calling and differential analysis independent of GC content bias and IP efficiency changes.'
 
diff --git a/recipes/bioconductor-experimenthub/meta.yaml b/recipes/bioconductor-experimenthub/meta.yaml
index 09bc1a50ca50b..931b307d36148 100644
--- a/recipes/bioconductor-experimenthub/meta.yaml
+++ b/recipes/bioconductor-experimenthub/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.8.0" %}
+{% set version = "2.10.0" %}
 {% set name = "ExperimentHub" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c7f87d5d1ab426cae3083029b6d345f5
+  md5: bea896eadb8eb999e48d1cf5974dfe9e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-experimenthub", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr, BiocStyle, rmarkdown, HubPub
+# Suggests: knitr, BiocStyle, rmarkdown, HubPub, GenomicAlignments
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-biocmanager
     - r-rappdirs
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-biocmanager
     - r-rappdirs
diff --git a/recipes/bioconductor-experimenthubdata/meta.yaml b/recipes/bioconductor-experimenthubdata/meta.yaml
index 48f5e4a1939f5..67fe9eb4addd6 100644
--- a/recipes/bioconductor-experimenthubdata/meta.yaml
+++ b/recipes/bioconductor-experimenthubdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "ExperimentHubData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 55726da02a14f0b5b2805153bbb0fbe7
+  md5: 9e36d1a7958213cce85feccfd46fd7d5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-experimenthubdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomeInfoDb, RUnit, knitr, BiocStyle, rmarkdown, HubPub
 requirements:
   host:
-    - 'bioconductor-annotationhubdata >=1.30.0,<1.31.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationhubdata >=1.32.0,<1.33.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-biocmanager
     - r-curl
     - r-dbi
     - r-httr
   run:
-    - 'bioconductor-annotationhubdata >=1.30.0,<1.31.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationhubdata >=1.32.0,<1.33.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-biocmanager
     - r-curl
diff --git a/recipes/bioconductor-experimentsubset/meta.yaml b/recipes/bioconductor-experimentsubset/meta.yaml
index 747fd0314fe40..b3c0f29e6a81f 100644
--- a/recipes/bioconductor-experimentsubset/meta.yaml
+++ b/recipes/bioconductor-experimentsubset/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "ExperimentSubset" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ae8e83b163d8d2394af49d2c3c2a333c
+  md5: fc52b3d67f7f9641a3851f987af7cdee
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-experimentsubset", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, covr, stats, scran, scater, scds, TENxPBMCData, airway
 requirements:
   host:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-treesummarizedexperiment >=2.8.0,<2.9.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-treesummarizedexperiment >=2.10.0,<2.11.0'
     - r-base
     - r-matrix
   run:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-treesummarizedexperiment >=2.8.0,<2.9.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-treesummarizedexperiment >=2.10.0,<2.11.0'
     - r-base
     - r-matrix
 test:
diff --git a/recipes/bioconductor-exploremodelmatrix/meta.yaml b/recipes/bioconductor-exploremodelmatrix/meta.yaml
index 73eb8daa5103a..810de26338c61 100644
--- a/recipes/bioconductor-exploremodelmatrix/meta.yaml
+++ b/recipes/bioconductor-exploremodelmatrix/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "ExploreModelMatrix" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e5317164fd3206c56c7e566b8a7ef102
+  md5: 86f96045b0ae6877428f28466b113097
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-exploremodelmatrix", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 2.1.0), knitr, rmarkdown, htmltools, BiocStyle
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cowplot
     - r-dplyr
@@ -38,8 +39,8 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cowplot
     - r-dplyr
diff --git a/recipes/bioconductor-expressionatlas/meta.yaml b/recipes/bioconductor-expressionatlas/meta.yaml
index c61896e634c13..07e7c2df9194b 100644
--- a/recipes/bioconductor-expressionatlas/meta.yaml
+++ b/recipes/bioconductor-expressionatlas/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "ExpressionAtlas" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7abccba2bf2c9ebfd1ed02b907fb05b5
+  md5: eb11568a0a2a81e1bf636eaa24e45906
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-expressionatlas", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-httr
     - r-jsonlite
@@ -33,11 +34,11 @@ requirements:
     - r-xml
     - r-xml2
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-httr
     - r-jsonlite
diff --git a/recipes/bioconductor-extrachips/build_failure.osx-64.yaml b/recipes/bioconductor-extrachips/build_failure.osx-64.yaml
new file mode 100644
index 0000000000000..4061ce0faf29f
--- /dev/null
+++ b/recipes/bioconductor-extrachips/build_failure.osx-64.yaml
@@ -0,0 +1,106 @@
+recipe_sha: cd6c654642b58a1ae021676e3516975dbc01a6ba6e27b668bc181e21ad457739  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+category: |-
+  dependency issue
+log: |2-
+   /opt/mambaforge/envs/bioconda/conda-bld/work
+    Test:
+   /opt/mambaforge/envs/bioconda/conda-bld/test_tmp
+  Leaving build/test environments:
+    Test:
+  source activate  /opt/mambaforge/envs/bioconda/conda-bld/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla
+    Build:
+  source activate  /opt/mambaforge/envs/bioconda/conda-bld/_build_env
+
+
+  Traceback (most recent call last):
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 141, in mamba_get_install_actions
+      solution = solver.solve_for_action(_specs, prefix)
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/core/solver.py", line 244, in solve_for_action
+      t = self.solve(specs)
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/core/solver.py", line 234, in solve
+      raise RuntimeError("Solver could not find solution."  error_string)
+  RuntimeError: Solver could not find solution.Mamba failed to solve:
+   - r-ggside >=0.2.2
+   - r-glue
+   - libblas 3.9.* *netlib
+   - r-ggplot2 >=3.4.0
+   - bioconductor-interactionset >=1.30.0,<1.31.0
+   - r-dplyr >=1.1.1
+   - liblapack 3.9.* *netlib
+   - bioconductor-enrichedheatmap >=1.32.0,<1.33.0
+   - bioconductor-limma >=3.58.0,<3.59.0
+   - bioconductor-rtracklayer >=1.62.0,<1.63.0
+   - r-tidyr
+   - r-ggforce
+   - bioconductor-genomicranges >=1.54.0,<1.55.0
+   - bioconductor-genomicinteractions >=1.36.0,<1.37.0
+   - r-stringr
+   - r-scales
+   - r-tidyselect
+   - r-ggrepel
+   - r-base 4.3.*
+   - r-rlang
+   - bioconductor-iranges >=2.36.0,<2.37.0
+   - bioconductor-summarizedexperiment >=1.32.0,<1.33.0
+   - bioconductor-edger >=4.0.0,<4.1.0
+   - r-vctrs
+   - r-broom
+   - r-complexupset
+   - bioconductor-s4vectors >=0.40.0,<0.41.0
+   - bioconductor-genomeinfodb >=1.38.0,<1.39.0
+   - r-matrixstats
+   - r-patchwork
+   - bioconductor-csaw >=1.36.0,<1.37.0
+   - r-forcats
+   - r-venndiagram
+   - bioconductor-biocio >=1.12.0,<1.13.0
+   - bioconductor-gviz >=1.46.0,<1.47.0
+   - r-rcolorbrewer
+   - r-tibble
+   - bioconductor-rsamtools >=2.18.0,<2.19.0
+   - bioconductor-biocparallel >=1.36.0,<1.37.0
+
+  with channels:
+   - conda-forge
+   - bioconda
+   - defaults
+
+  The reported errors are:
+  - Encountered problems while solving:
+  -   - nothing provides requested bioconductor-enrichedheatmap >=1.32.0,<1.33.0
+  -
+
+  During handling of the above exception, another exception occurred:
+
+  Traceback (most recent call last):
+    File "/opt/mambaforge/envs/bioconda/bin/conda-mambabuild", line 10, in <module>
+      sys.exit(main())
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
+      call_conda_build(action, config)
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
+      result = api.build(
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
+      return build_tree(
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
+      packages_from_this = build(metadata, stats,
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 2038, in build
+      output_metas = expand_outputs([(m, need_source_download, need_reparse_in_env)])
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/render.py", line 787, in expand_outputs
+      for (output_dict, m) in deepcopy(_m).get_output_metadata_set(permit_unsatisfiable_variants=False):
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/metadata.py", line 2524, in get_output_metadata_set
+      conda_packages = finalize_outputs_pass(
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/metadata.py", line 884, in finalize_outputs_pass
+      fm = finalize_metadata(
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/render.py", line 547, in finalize_metadata
+      build_unsat, host_unsat = add_upstream_pins(m,
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/render.py", line 409, in add_upstream_pins
+      host_deps, host_unsat, extra_run_specs_from_host = _read_upstream_pin_files(m, 'host',
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/render.py", line 374, in _read_upstream_pin_files
+      deps, actions, unsat = get_env_dependencies(m, env, m.config.variant,
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/render.py", line 131, in get_env_dependencies
+      actions = environ.get_install_actions(tmpdir, tuple(dependencies), env,
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 150, in mamba_get_install_actions
+      raise err
+  conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform osx-64: {MatchSpec("bioconductor-enrichedheatmap[version='>=1.32.0,<1.33.0']")}
+# Last 100 lines of the build log.
diff --git a/recipes/bioconductor-extrachips/meta.yaml b/recipes/bioconductor-extrachips/meta.yaml
index 6a323e02d4b8a..678c82cbb0c55 100644
--- a/recipes/bioconductor-extrachips/meta.yaml
+++ b/recipes/bioconductor-extrachips/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.5" %}
+{% set version = "1.6.0" %}
 {% set name = "extraChIPs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,40 +11,41 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c26b5ce1303129efe33efebc2fa60dd5
+  md5: 462672c12f16f912b7e3d4b30a07162f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-extrachips", max_pin="x.x") }}'
 # Suggests: BiocStyle, covr, cqn, harmonicmeanp, here, knitr, magrittr, plyranges, quantro, rmarkdown, testthat (>= 3.0.0), tidyverse
 requirements:
   host:
-    - 'bioconductor-biocio >=1.10.0,<1.11.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-csaw >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-enrichedheatmap >=1.30.0,<1.31.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicinteractions >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocio >=1.12.0,<1.13.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-csaw >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-enrichedheatmap >=1.32.0,<1.33.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicinteractions >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-broom
     - r-complexupset
-    - 'r-dplyr >=1.1.0'
+    - 'r-dplyr >=1.1.1'
     - r-forcats
     - r-ggforce
     - 'r-ggplot2 >=3.4.0'
     - r-ggrepel
-    - r-ggside
+    - 'r-ggside >=0.2.2'
     - r-glue
     - r-matrixstats
     - r-patchwork
@@ -60,31 +61,31 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocio >=1.10.0,<1.11.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-csaw >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-enrichedheatmap >=1.30.0,<1.31.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicinteractions >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocio >=1.12.0,<1.13.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-csaw >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-enrichedheatmap >=1.32.0,<1.33.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicinteractions >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-broom
     - r-complexupset
-    - 'r-dplyr >=1.1.0'
+    - 'r-dplyr >=1.1.1'
     - r-forcats
     - r-ggforce
     - 'r-ggplot2 >=3.4.0'
     - r-ggrepel
-    - r-ggside
+    - 'r-ggside >=0.2.2'
     - r-glue
     - r-matrixstats
     - r-patchwork
diff --git a/recipes/bioconductor-faahko/meta.yaml b/recipes/bioconductor-faahko/meta.yaml
index 5b4d091c85cb5..16959e9059ddd 100644
--- a/recipes/bioconductor-faahko/meta.yaml
+++ b/recipes/bioconductor-faahko/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "faahKO" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 29697c16b4e90b21fd8515dfdfea7fde
+  md5: 3525f525973323d33955a68ca38b5cd7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-faahko", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-base
   run:
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-faahko/post-link.sh b/recipes/bioconductor-faahko/post-link.sh
index 091dc51972ffa..8d50d83771269 100644
--- a/recipes/bioconductor-faahko/post-link.sh
+++ b/recipes/bioconductor-faahko/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "faahko-1.40.0"
+installBiocDataPackage.sh "faahko-1.42.0"
diff --git a/recipes/bioconductor-fabia/meta.yaml b/recipes/bioconductor-fabia/meta.yaml
index 2371256f1c4b2..aadcaa307b6c8 100644
--- a/recipes/bioconductor-fabia/meta.yaml
+++ b/recipes/bioconductor-fabia/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.46.0" %}
+{% set version = "2.48.0" %}
 {% set name = "fabia" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 9920fe1cb40cc35e9c53a0b15e4f56e5
+  md5: 9d336b3c9a97aca0a6b062ec137f5566
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fabia", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-fabiadata/meta.yaml b/recipes/bioconductor-fabiadata/meta.yaml
index 343950c36eaed..8de5e015973e7 100644
--- a/recipes/bioconductor-fabiadata/meta.yaml
+++ b/recipes/bioconductor-fabiadata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "fabiaData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 970fc1894222fe7eac67b8c94d9a2eab
+  md5: 7fd64db4d15610a66c609e60624bbff9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fabiadata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: fabia
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-fabiadata/post-link.sh b/recipes/bioconductor-fabiadata/post-link.sh
index 77a1795a9f905..561c4ec71758f 100644
--- a/recipes/bioconductor-fabiadata/post-link.sh
+++ b/recipes/bioconductor-fabiadata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "fabiadata-1.38.0"
+installBiocDataPackage.sh "fabiadata-1.40.0"
diff --git a/recipes/bioconductor-factdesign/meta.yaml b/recipes/bioconductor-factdesign/meta.yaml
index df24a022421cc..695bb48686cab 100644
--- a/recipes/bioconductor-factdesign/meta.yaml
+++ b/recipes/bioconductor-factdesign/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.76.0" %}
+{% set version = "1.78.0" %}
 {% set name = "factDesign" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cb6bfbecf160000664037c0bf51f9953
+  md5: 774d444f3227bbac6bc13e48d3974b20
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-factdesign", max_pin="x.x") }}'
   noarch: generic
 # Suggests: affy, genefilter, multtest
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-factr/meta.yaml b/recipes/bioconductor-factr/meta.yaml
index 98f77eee10aa2..a9c19a5db30aa 100644
--- a/recipes/bioconductor-factr/meta.yaml
+++ b/recipes/bioconductor-factr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "factR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,64 +11,65 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4494ae41081395fd86e88600af5d4ada
+  md5: 55b088d84e382a7068b40062151e4bec
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-factr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: AnnotationHub (>= 2.22), BSgenome (>= 1.58), BSgenome.Mmusculus.UCSC.mm10, testthat, knitr, rmarkdown, markdown, zeallot, rmdformats, bio3d (>= 2.4), signalHsmm (>= 1.5), tidyverse (>= 1.3), covr, patchwork
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-drawproteins >=1.20.0,<1.21.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-wiggleplotr >=1.24.0,<1.25.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-drawproteins >=1.22.0,<1.23.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-wiggleplotr >=1.26.0,<1.27.0'
     - r-base
-    - r-crayon
+    - 'r-crayon >=1.5'
     - 'r-data.table >=1.14'
-    - 'r-dplyr >=1.0'
-    - 'r-ggplot2 >=3.3'
-    - 'r-pbapply >=1.5'
-    - 'r-purrr >=0.3'
+    - 'r-dplyr >=1.1'
+    - 'r-ggplot2 >=3.4'
+    - 'r-pbapply >=1.7'
+    - 'r-purrr >=1.0'
     - 'r-rcurl >=1.98'
-    - 'r-rlang >=1.0'
-    - 'r-stringr >=1.4'
-    - 'r-tibble >=3.1'
-    - 'r-tidyr >=1.1'
+    - 'r-rlang >=1.1'
+    - 'r-stringr >=1.5'
+    - 'r-tibble >=3.2'
+    - 'r-tidyr >=1.3'
     - 'r-xml >=3.99'
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-drawproteins >=1.20.0,<1.21.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-wiggleplotr >=1.24.0,<1.25.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-drawproteins >=1.22.0,<1.23.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-wiggleplotr >=1.26.0,<1.27.0'
     - r-base
-    - r-crayon
+    - 'r-crayon >=1.5'
     - 'r-data.table >=1.14'
-    - 'r-dplyr >=1.0'
-    - 'r-ggplot2 >=3.3'
-    - 'r-pbapply >=1.5'
-    - 'r-purrr >=0.3'
+    - 'r-dplyr >=1.1'
+    - 'r-ggplot2 >=3.4'
+    - 'r-pbapply >=1.7'
+    - 'r-purrr >=1.0'
     - 'r-rcurl >=1.98'
-    - 'r-rlang >=1.0'
-    - 'r-stringr >=1.4'
-    - 'r-tibble >=3.1'
-    - 'r-tidyr >=1.1'
+    - 'r-rlang >=1.1'
+    - 'r-stringr >=1.5'
+    - 'r-tibble >=3.2'
+    - 'r-tidyr >=1.3'
     - 'r-xml >=3.99'
 test:
   commands:
diff --git a/recipes/bioconductor-famagg/meta.yaml b/recipes/bioconductor-famagg/meta.yaml
index d524237b721d7..b68b0c8f34645 100644
--- a/recipes/bioconductor-famagg/meta.yaml
+++ b/recipes/bioconductor-famagg/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "FamAgg" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 62218f2a42b754c17175ce542c0850fc
+  md5: 0169ebe9c05d0b540946e2d111fe6437
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-famagg", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, RUnit, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - 'r-gap >=1.1-17'
     - r-igraph
@@ -29,7 +30,7 @@ requirements:
     - r-matrix
     - r-survey
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - 'r-gap >=1.1-17'
     - r-igraph
diff --git a/recipes/bioconductor-famat/meta.yaml b/recipes/bioconductor-famat/meta.yaml
index ccdc6dda84ad4..425dee5ad0e88 100644
--- a/recipes/bioconductor-famat/meta.yaml
+++ b/recipes/bioconductor-famat/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "famat" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: e59deb7c41a3ecec355312a5db76f4cf
+  md5: 12883ce4989ed35758a8902493e2bb07
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-famat", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, BiocManager
 requirements:
   host:
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-reactome.db >=1.84.0,<1.85.0'
-    - 'bioconductor-rwikipathways >=1.20.0,<1.21.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-reactome.db >=1.86.0,<1.87.0'
+    - 'bioconductor-rwikipathways >=1.22.0,<1.23.0'
     - r-base
     - r-biasedurn
     - r-dplyr
@@ -42,12 +43,12 @@ requirements:
     - r-stringr
     - r-tidyr
   run:
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-reactome.db >=1.84.0,<1.85.0'
-    - 'bioconductor-rwikipathways >=1.20.0,<1.21.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-reactome.db >=1.86.0,<1.87.0'
+    - 'bioconductor-rwikipathways >=1.22.0,<1.23.0'
     - r-base
     - r-biasedurn
     - r-dplyr
diff --git a/recipes/bioconductor-fantom3and4cage/meta.yaml b/recipes/bioconductor-fantom3and4cage/meta.yaml
index ffd1135dc5f77..bffc9cb885992 100644
--- a/recipes/bioconductor-fantom3and4cage/meta.yaml
+++ b/recipes/bioconductor-fantom3and4cage/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "FANTOM3and4CAGE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 049d0b3978f16771bd7e48aa80e8fb93
+  md5: 5d964e7a085d6a7b00e2b2215b765861
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fantom3and4cage", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-fantom3and4cage/post-link.sh b/recipes/bioconductor-fantom3and4cage/post-link.sh
index 7ad71e3469da9..53f3c97e37d5f 100644
--- a/recipes/bioconductor-fantom3and4cage/post-link.sh
+++ b/recipes/bioconductor-fantom3and4cage/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "fantom3and4cage-1.36.0"
+installBiocDataPackage.sh "fantom3and4cage-1.38.0"
diff --git a/recipes/bioconductor-fastliquidassociation/meta.yaml b/recipes/bioconductor-fastliquidassociation/meta.yaml
index cd2ac541108b7..c8a5f515cdf33 100644
--- a/recipes/bioconductor-fastliquidassociation/meta.yaml
+++ b/recipes/bioconductor-fastliquidassociation/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "fastLiquidAssociation" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 19cd90ee83e1fe666279d7656fb9cb78
+  md5: b57e0af4700d6a6872d88ca0d2eda5d1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fastliquidassociation", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GOstats, yeastCC, org.Sc.sgd.db
 requirements:
   host:
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-liquidassociation >=1.54.0,<1.55.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-liquidassociation >=1.56.0,<1.57.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-doparallel
     - r-hmisc
     - r-wgcna
   run:
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-liquidassociation >=1.54.0,<1.55.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-liquidassociation >=1.56.0,<1.57.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-doparallel
     - r-hmisc
diff --git a/recipes/bioconductor-fastqcleaner/meta.yaml b/recipes/bioconductor-fastqcleaner/meta.yaml
index ed4e50ec8a0b8..5b847ec2591fe 100644
--- a/recipes/bioconductor-fastqcleaner/meta.yaml
+++ b/recipes/bioconductor-fastqcleaner/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "FastqCleaner" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6f5a185e44c2e087d9cd502343839a20
+  md5: bace77f4e33bd7fe58cbbadaefd896d8
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fastqcleaner", max_pin="x.x") }}'
 # Suggests: BiocStyle, testthat, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - r-dt
     - r-htmltools
@@ -33,10 +34,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - r-dt
     - r-htmltools
@@ -57,3 +58,8 @@ about:
   description: 'An interactive web application for quality control, filtering and trimming of FASTQ files. This user-friendly tool combines a pipeline for data processing based on Biostrings and ShortRead infrastructure, with a cutting-edge visual environment. Single-Read and Paired-End files can be locally processed. Diagnostic interactive plots (CG content, per-base sequence quality, etc.) are provided for both the input and output files.'
   license_file: LICENSE
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
diff --git a/recipes/bioconductor-fastreer/meta.yaml b/recipes/bioconductor-fastreer/meta.yaml
index 43941e0d8973d..cf391745726da 100644
--- a/recipes/bioconductor-fastreer/meta.yaml
+++ b/recipes/bioconductor-fastreer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "fastreeR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8992e9982a96e461d83174b1e401637c
+  md5: e2b7164aeaa305f819536d9b85e4de12
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fastreer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocFileCache, BiocStyle, graphics, knitr, memuse, rmarkdown, spelling, testthat (>= 3.0.0)
 # SystemRequirements: Java (>= 8)
diff --git a/recipes/bioconductor-fastseg/meta.yaml b/recipes/bioconductor-fastseg/meta.yaml
index 868ab493238d2..5e6686b13d3d2 100644
--- a/recipes/bioconductor-fastseg/meta.yaml
+++ b/recipes/bioconductor-fastseg/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "fastseg" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 742f51d390453aca568b16001d3d674f
+  md5: ca8ead071a9b881b19dea7b71e0e73b4
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
-# Suggests: DNAcopy, oligo
+  run_exports: '{{ pin_subpackage("bioconductor-fastseg", max_pin="x.x") }}'
+# Suggests: DNAcopy, oligo, BiocStyle, knitr
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   build:
     - {{ compiler('c') }}
@@ -44,11 +45,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'LGPL (>= 2.0)'
+  license: 'LGPL-3.0-or-later'
   summary: 'fastseg - a fast segmentation algorithm'
   description: 'fastseg implements a very fast and efficient segmentation algorithm. It has similar functionality as DNACopy (Olshen and Venkatraman 2004), but is considerably faster and more flexible. fastseg can segment data from DNA microarrays and data from next generation sequencing for example to detect copy number segments. Further it can segment data from RNA microarrays like tiling arrays to identify transcripts. Most generally, it can segment data given as a matrix or as a vector. Various data formats can be used as input to fastseg like expression set objects for microarrays or GRanges for sequencing data. The segmentation criterion of fastseg is based on a statistical test in a Bayesian framework, namely the cyber t-test (Baldi 2001). The speed-up arises from the facts, that sampling is not necessary in for fastseg and that a dynamic programming approach is used for calculation of the segments'' first and higher order moments.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/LGPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:fastseg
   parent_recipe:
diff --git a/recipes/bioconductor-fccac/meta.yaml b/recipes/bioconductor-fccac/meta.yaml
index 4f60ddf7d6845..e2b8cff1c58c2 100644
--- a/recipes/bioconductor-fccac/meta.yaml
+++ b/recipes/bioconductor-fccac/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "fCCAC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 78d5504a05fdc9fe1b993a0244a06ace
+  md5: f4152105666120b6529f55983c4e2aa3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fccac", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-genomation >=1.32.0,<1.33.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-genomation >=1.34.0,<1.35.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-fda
     - r-ggplot2
     - r-rcolorbrewer
   run:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-genomation >=1.32.0,<1.33.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-genomation >=1.34.0,<1.35.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-fda
     - r-ggplot2
diff --git a/recipes/bioconductor-fci/meta.yaml b/recipes/bioconductor-fci/meta.yaml
index 22d517c7944cd..de6bb8839434c 100644
--- a/recipes/bioconductor-fci/meta.yaml
+++ b/recipes/bioconductor-fci/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "fCI" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7c5f500670ac386e7cb2318b3f93891b
+  md5: 5a6ec7dcf6303ef44018924283b87586
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fci", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle
 requirements:
diff --git a/recipes/bioconductor-fcscan/meta.yaml b/recipes/bioconductor-fcscan/meta.yaml
index 57a171acf4588..bcf4f078fb8c9 100644
--- a/recipes/bioconductor-fcscan/meta.yaml
+++ b/recipes/bioconductor-fcscan/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "fcScan" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 497ff22cdc8e837d2a49fa931c6aa162
+  md5: a23eab38b0106852ecca920f1f1db0bb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fcscan", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-doparallel
     - r-foreach
     - r-plyr
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-doparallel
     - r-foreach
diff --git a/recipes/bioconductor-fdb.fantom4.promoters.hg19/meta.yaml b/recipes/bioconductor-fdb.fantom4.promoters.hg19/meta.yaml
index 9c850222c2153..3a5d0aac46574 100644
--- a/recipes/bioconductor-fdb.fantom4.promoters.hg19/meta.yaml
+++ b/recipes/bioconductor-fdb.fantom4.promoters.hg19/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.0" %}
 {% set name = "FDb.FANTOM4.promoters.hg19" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,25 +13,26 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 99a610eb895470e3d945acc5cfb3ebe6
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fdb.fantom4.promoters.hg19", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Hsapiens.UCSC.hg19, rtracklayer, matrixStats
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-fdb.infiniummethylation.hg18/meta.yaml b/recipes/bioconductor-fdb.infiniummethylation.hg18/meta.yaml
index fe8afec3ab01b..66990d70a99d3 100644
--- a/recipes/bioconductor-fdb.infiniummethylation.hg18/meta.yaml
+++ b/recipes/bioconductor-fdb.infiniummethylation.hg18/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.2.0" %}
 {% set name = "FDb.InfiniumMethylation.hg18" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,28 +13,29 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 95ceab50d0a7c3d417cee12fbe3defb3
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fdb.infiniummethylation.hg18", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg18.knowngene >=3.2.0,<3.3.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg18.knowngene >=3.2.0,<3.3.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-fdb.infiniummethylation.hg19/meta.yaml b/recipes/bioconductor-fdb.infiniummethylation.hg19/meta.yaml
index 9a89db96412bf..3f4a764d09a61 100644
--- a/recipes/bioconductor-fdb.infiniummethylation.hg19/meta.yaml
+++ b/recipes/bioconductor-fdb.infiniummethylation.hg19/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.2.0" %}
 {% set name = "FDb.InfiniumMethylation.hg19" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,29 +13,30 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: b8b1abc599b9556b9fe9c6e824cb2697
 build:
-  number: 15
+  number: 16
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fdb.infiniummethylation.hg19", max_pin="x.x") }}'
   noarch: generic
 # Suggests: FDb.UCSC.snp135common.hg19
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-fdb.ucsc.snp135common.hg19/meta.yaml b/recipes/bioconductor-fdb.ucsc.snp135common.hg19/meta.yaml
index f54c865e42788..76eab4357415e 100644
--- a/recipes/bioconductor-fdb.ucsc.snp135common.hg19/meta.yaml
+++ b/recipes/bioconductor-fdb.ucsc.snp135common.hg19/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.0" %}
 {% set name = "FDb.UCSC.snp135common.hg19" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 0cdca5fa595bb69464016ceb97635f78
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fdb.ucsc.snp135common.hg19", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Hsapiens.UCSC.hg19, SNPlocs.Hsapiens.dbSNP.20111119
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-fdb.ucsc.snp137common.hg19/meta.yaml b/recipes/bioconductor-fdb.ucsc.snp137common.hg19/meta.yaml
index a1ff83de10f2b..0fd1755b911dc 100644
--- a/recipes/bioconductor-fdb.ucsc.snp137common.hg19/meta.yaml
+++ b/recipes/bioconductor-fdb.ucsc.snp137common.hg19/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.0" %}
 {% set name = "FDb.UCSC.snp137common.hg19" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: dac83f2d2f9ea9f033e50beac5c44838
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fdb.ucsc.snp137common.hg19", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Hsapiens.UCSC.hg19
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-fdb.ucsc.trnas/meta.yaml b/recipes/bioconductor-fdb.ucsc.trnas/meta.yaml
index f007f80703caa..c95a592d717ad 100644
--- a/recipes/bioconductor-fdb.ucsc.trnas/meta.yaml
+++ b/recipes/bioconductor-fdb.ucsc.trnas/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.1" %}
 {% set name = "FDb.UCSC.tRNAs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 77bfdadd4d9f995a72b001e4e41792fa
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fdb.ucsc.trnas", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-fdrame/meta.yaml b/recipes/bioconductor-fdrame/meta.yaml
index 03ae4ceea9649..37166d2fd75f6 100644
--- a/recipes/bioconductor-fdrame/meta.yaml
+++ b/recipes/bioconductor-fdrame/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %} 
+{% set version = "1.74.0" %}
 {% set name = "fdrame" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 4ed3cd1054bb77ea566bc89e8fe00285
+  md5: d7fafba89f784f421a43b4b4d9a10000
 build:
   number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fdrame", max_pin="x.x") }}'
 requirements:
   host:
     - r-base
diff --git a/recipes/bioconductor-feast/meta.yaml b/recipes/bioconductor-feast/meta.yaml
index 68598a4aa23b0..1ba80d9f1fc73 100644
--- a/recipes/bioconductor-feast/meta.yaml
+++ b/recipes/bioconductor-feast/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "FEAST" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1337d86557f7c377f5a80484bff003f4
+  md5: 5b32fdf869bc97368c62f50ccd8fe9f5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-feast", max_pin="x.x") }}'
 # Suggests: rmarkdown, Seurat, ggpubr, knitr, testthat (>= 3.0.0), BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-sc3 >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tscan >=1.38.0,<1.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-sc3 >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tscan >=1.40.0,<1.41.0'
     - r-base
     - r-irlba
     - r-matrixstats
@@ -32,11 +33,11 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-sc3 >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tscan >=1.38.0,<1.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-sc3 >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tscan >=1.40.0,<1.41.0'
     - r-base
     - r-irlba
     - r-matrixstats
diff --git a/recipes/bioconductor-featseekr/meta.yaml b/recipes/bioconductor-featseekr/meta.yaml
index cd2969666b135..b13b10cada5f1 100644
--- a/recipes/bioconductor-featseekr/meta.yaml
+++ b/recipes/bioconductor-featseekr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "FeatSeekR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 14bd43f9ea1a98d7c049f34d20c1a66d
+  md5: 9792a703c1ec0b4a58c759274c2cb571
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-featseekr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, knitr, BiocStyle, DmelSGI, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-mass
     - r-pheatmap
     - r-pracma
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-mass
     - r-pheatmap
diff --git a/recipes/bioconductor-fedup/meta.yaml b/recipes/bioconductor-fedup/meta.yaml
index 9fadc2a2d359a..ab157eb4d27ac 100644
--- a/recipes/bioconductor-fedup/meta.yaml
+++ b/recipes/bioconductor-fedup/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "fedup" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 1264d858aa93e0c49dd71e11c6215848
+  md5: a5ac34da42c1a460ab50e307c73f8116
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fedup", max_pin="x.x") }}'
   noarch: generic
 # Suggests: biomaRt, tidyr, testthat, knitr, rmarkdown, devtools, covr
 requirements:
   host:
-    - 'bioconductor-rcy3 >=2.20.0,<2.21.0'
+    - 'bioconductor-rcy3 >=2.22.0,<2.23.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -32,7 +33,7 @@ requirements:
     - r-rcolorbrewer
     - r-tibble
   run:
-    - 'bioconductor-rcy3 >=2.20.0,<2.21.0'
+    - 'bioconductor-rcy3 >=2.22.0,<2.23.0'
     - r-base
     - r-data.table
     - r-dplyr
diff --git a/recipes/bioconductor-fella/meta.yaml b/recipes/bioconductor-fella/meta.yaml
index c282fc3e1af17..0b00c88027e81 100644
--- a/recipes/bioconductor-fella/meta.yaml
+++ b/recipes/bioconductor-fella/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "FELLA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9b1bee53b4cef474ce91c2920b8ca4dd
+  md5: 106f8558197df891cfb6e28e406363e1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fella", max_pin="x.x") }}'
   noarch: generic
 # Suggests: shiny, DT, magrittr, visNetwork, knitr, BiocStyle, rmarkdown, testthat, biomaRt, org.Hs.eg.db, org.Mm.eg.db, AnnotationDbi, GOSemSim
 requirements:
   host:
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
     - r-base
     - r-igraph
     - r-matrix
     - r-plyr
   run:
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
     - r-base
     - r-igraph
     - r-matrix
diff --git a/recipes/bioconductor-fenr/build.sh b/recipes/bioconductor-fenr/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-fenr/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-fenr/meta.yaml b/recipes/bioconductor-fenr/meta.yaml
new file mode 100644
index 0000000000000..1c2c8d0c43996
--- /dev/null
+++ b/recipes/bioconductor-fenr/meta.yaml
@@ -0,0 +1,71 @@
+{% set version = "1.0.0" %}
+{% set name = "fenr" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
+  md5: f908fa38bd91672d7d0567d6232d2214
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fenr", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, testthat, knitr, rmarkdown, topGO, org.Hs.eg.db
+requirements:
+  host:
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - r-assertthat
+    - r-base
+    - r-dplyr
+    - r-ggplot2
+    - r-httr
+    - r-jsonlite
+    - r-progress
+    - r-purrr
+    - r-readr
+    - r-rlang
+    - r-shiny
+    - r-stringr
+    - r-tibble
+    - r-tidyr
+    - r-tidyselect
+    - r-xml
+  run:
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - r-assertthat
+    - r-base
+    - r-dplyr
+    - r-ggplot2
+    - r-httr
+    - r-jsonlite
+    - r-progress
+    - r-purrr
+    - r-readr
+    - r-rlang
+    - r-shiny
+    - r-stringr
+    - r-tibble
+    - r-tidyr
+    - r-tidyselect
+    - r-xml
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'MIT + file LICENSE'
+  summary: 'Fast functional enrichment for interactive applications'
+  description: 'Perform fast functional enrichment on feature lists (like genes or proteins) using the hypergeometric distribution. Tailored for speed, this package is ideal for interactive platforms such as Shiny. It supports the retrieval of functional data from sources like GO, KEGG, Reactome, and WikiPathways. By downloading and preparing data first, it allows for rapid successive tests on various feature selections without the need for repetitive, time-consuming preparatory steps typical of other packages.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-ffpe/meta.yaml b/recipes/bioconductor-ffpe/meta.yaml
index f9e56c7cab696..0a41ce9b5dabf 100644
--- a/recipes/bioconductor-ffpe/meta.yaml
+++ b/recipes/bioconductor-ffpe/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.44.0" %}
+{% set version = "1.46.0" %}
 {% set name = "ffpe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 2cb6393fc9ed1d1286a10016f95d8b56
+  md5: c2a3dbd53e85caf82d7c8f91a8277454
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ffpe", max_pin="x.x") }}'
   noarch: generic
 # Suggests: genefilter, ffpeExampleData
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
-    - 'bioconductor-methylumi >=2.46.0,<2.47.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
+    - 'bioconductor-methylumi >=2.48.0,<2.49.0'
     - r-base
     - r-sfsmisc
     - r-ttr
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
-    - 'bioconductor-methylumi >=2.46.0,<2.47.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
+    - 'bioconductor-methylumi >=2.48.0,<2.49.0'
     - r-base
     - r-sfsmisc
     - r-ttr
diff --git a/recipes/bioconductor-ffpeexampledata/meta.yaml b/recipes/bioconductor-ffpeexampledata/meta.yaml
index 5affb00b25589..e47fc10975fe9 100644
--- a/recipes/bioconductor-ffpeexampledata/meta.yaml
+++ b/recipes/bioconductor-ffpeexampledata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "ffpeExampleData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f5b4c1bcd2467b0b82973b2e70243ef0
+  md5: 6ea474bdf448ff6026ec4f1f376b7d69
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ffpeexampledata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: genefilter, affy
 requirements:
   host:
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
     - r-base
   run:
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ffpeexampledata/post-link.sh b/recipes/bioconductor-ffpeexampledata/post-link.sh
index bb74729fed1f2..8070c5cbda31e 100644
--- a/recipes/bioconductor-ffpeexampledata/post-link.sh
+++ b/recipes/bioconductor-ffpeexampledata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "ffpeexampledata-1.38.0"
+installBiocDataPackage.sh "ffpeexampledata-1.40.0"
diff --git a/recipes/bioconductor-fgga/meta.yaml b/recipes/bioconductor-fgga/meta.yaml
index 0a9b21b325fc1..5988b466d1305 100644
--- a/recipes/bioconductor-fgga/meta.yaml
+++ b/recipes/bioconductor-fgga/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.9.0" %}
 {% set name = "fgga" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 47ae70169f23e0631cd50fc840dd2973
+  md5: eaa84557f2fd00490bb5f9f12e8ca1d3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fgga", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, GOstats, GO.db, BiocGenerics, pROC, RUnit, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
     - r-base
     - r-curl
     - r-e1071
     - r-grbase
     - r-jsonlite
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
     - r-base
     - r-curl
     - r-e1071
diff --git a/recipes/bioconductor-fgnet/meta.yaml b/recipes/bioconductor-fgnet/meta.yaml
index ffe2941c90507..c90b268edfc43 100644
--- a/recipes/bioconductor-fgnet/meta.yaml
+++ b/recipes/bioconductor-fgnet/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.34.0" %}
+{% set version = "3.36.0" %}
 {% set name = "FGNet" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 46da20768d223011b2691e3f8575addb
+  md5: 00da241d84bdc16ec9a8b1e27a3db509
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fgnet", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RCurl, gage, topGO, GO.db, reactome.db, RUnit, BiocGenerics, org.Sc.sgd.db, knitr, rmarkdown, AnnotationDbi, BiocManager
 requirements:
diff --git a/recipes/bioconductor-fgsea/meta.yaml b/recipes/bioconductor-fgsea/meta.yaml
index b9ff9dc799c78..8463d4f6d6021 100644
--- a/recipes/bioconductor-fgsea/meta.yaml
+++ b/recipes/bioconductor-fgsea/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "fgsea" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 3b02276027800535421f38bbe5e83921
+  md5: 53b8ab8a13390a0920bc13eeba3aa1b8
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fgsea", max_pin="x.x") }}'
 # Suggests: testthat, knitr, rmarkdown, reactome.db, AnnotationDbi, parallel, org.Mm.eg.db, limma, GEOquery, msigdbr, aggregation, Seurat
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-bh
     - r-cowplot
@@ -34,7 +35,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-bh
     - r-cowplot
@@ -57,6 +58,8 @@ about:
   summary: 'Fast Gene Set Enrichment Analysis'
   description: 'The package implements an algorithm for fast gene set enrichment analysis. Using the fast algorithm allows to make more permutations and get more fine grained p-values, which allows to use accurate stantard approaches to multiple hypothesis correction.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:fgsea
     - doi:10.1101/060012
diff --git a/recipes/bioconductor-fibroeset/meta.yaml b/recipes/bioconductor-fibroeset/meta.yaml
index 1a3674c445420..8f520b8b38f59 100644
--- a/recipes/bioconductor-fibroeset/meta.yaml
+++ b/recipes/bioconductor-fibroeset/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "fibroEset" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 42efffdc75032b3305ebdceb55f3754f
+  md5: cbc13cc5c4ac4f6445dc69383ad183ff
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fibroeset", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-fibroeset/post-link.sh b/recipes/bioconductor-fibroeset/post-link.sh
index 646fd7df45ff7..bee7497a33fcb 100644
--- a/recipes/bioconductor-fibroeset/post-link.sh
+++ b/recipes/bioconductor-fibroeset/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "fibroeset-1.42.0"
+installBiocDataPackage.sh "fibroeset-1.44.0"
diff --git a/recipes/bioconductor-fieldeffectcrc/meta.yaml b/recipes/bioconductor-fieldeffectcrc/meta.yaml
index 6221d1d18f340..a75f40d2d0445 100644
--- a/recipes/bioconductor-fieldeffectcrc/meta.yaml
+++ b/recipes/bioconductor-fieldeffectcrc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "FieldEffectCrc" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b20c0c45eec814e077d124b45d6589a6
+  md5: 73fa4e8649f3c4a523764d35afd421f2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fieldeffectcrc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocGenerics, sva, BiocManager
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-runit
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-runit
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-fieldeffectcrc/post-link.sh b/recipes/bioconductor-fieldeffectcrc/post-link.sh
index b9e9fdb703e71..dca22c34d2083 100644
--- a/recipes/bioconductor-fieldeffectcrc/post-link.sh
+++ b/recipes/bioconductor-fieldeffectcrc/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "fieldeffectcrc-1.10.0"
+installBiocDataPackage.sh "fieldeffectcrc-1.12.0"
diff --git a/recipes/bioconductor-filterffpe/meta.yaml b/recipes/bioconductor-filterffpe/meta.yaml
index 2348708871e68..94d1f62824669 100644
--- a/recipes/bioconductor-filterffpe/meta.yaml
+++ b/recipes/bioconductor-filterffpe/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "FilterFFPE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 596fa16e66e1e46fdf0776b50b4b0ae2
+  md5: e2aabe533af9d2779d1ffc2f76017ecd
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-filterffpe", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-doparallel
     - r-foreach
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-doparallel
     - r-foreach
diff --git a/recipes/bioconductor-findit2/meta.yaml b/recipes/bioconductor-findit2/meta.yaml
index 06bf8a8711aeb..62b26bed34e95 100644
--- a/recipes/bioconductor-findit2/meta.yaml
+++ b/recipes/bioconductor-findit2/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "FindIT2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d09d40b53c0d856a804d4735d816fae8
+  md5: d48fffebc5ff34ec3276d3f4675d6c71
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-findit2", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, sessioninfo, testthat (>= 3.0.0), TxDb.Athaliana.BioMart.plantsmart28
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -46,17 +47,17 @@ requirements:
     - r-tidyr
     - r-withr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-fis/meta.yaml b/recipes/bioconductor-fis/meta.yaml
index 7cc084d4f9fbb..bc6ce25a237ce 100644
--- a/recipes/bioconductor-fis/meta.yaml
+++ b/recipes/bioconductor-fis/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "FIs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6a79abe38c53faa7176cd1dc4189351b
+  md5: ef807b75136742a1dcb5ea70993d5c38
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fis", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-fis/post-link.sh b/recipes/bioconductor-fis/post-link.sh
index b6c6f347761a8..081f3868dae51 100644
--- a/recipes/bioconductor-fis/post-link.sh
+++ b/recipes/bioconductor-fis/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "fis-1.28.0"
+installBiocDataPackage.sh "fis-1.30.0"
diff --git a/recipes/bioconductor-fishalyser/meta.yaml b/recipes/bioconductor-fishalyser/meta.yaml
index a65b079aeaf85..54a8f41dc04b4 100644
--- a/recipes/bioconductor-fishalyser/meta.yaml
+++ b/recipes/bioconductor-fishalyser/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "FISHalyseR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8263bd2ee43d6c8e6c05aedd5901b81f
+  md5: fea17ba4629a7d53c62eef47a3cdfab2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fishalyser", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
   host:
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
     - r-abind
     - r-base
   run:
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
     - r-abind
     - r-base
 test:
diff --git a/recipes/bioconductor-fishpond/meta.yaml b/recipes/bioconductor-fishpond/meta.yaml
index a2589b18d6606..92bd84c80a051 100644
--- a/recipes/bioconductor-fishpond/meta.yaml
+++ b/recipes/bioconductor-fishpond/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.6.2" %}
+{% set version = "2.8.0" %}
 {% set name = "fishpond" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: fb2d9b6d5b1ec1938baca42fd8936fbc
+  md5: 407bd027d801c207371750eba2c9d735
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fishpond", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, macrophage, tximeta, org.Hs.eg.db, samr, DESeq2, apeglm, tximportData, limma, ensembldb, EnsDb.Hsapiens.v86, GenomicFeatures, AnnotationDbi, pheatmap, Gviz, GenomeInfoDb, data.table
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-abind
     - r-base
     - r-gtools
@@ -35,12 +36,12 @@ requirements:
     - r-matrixstats
     - r-svmisc
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-abind
     - r-base
     - r-gtools
diff --git a/recipes/bioconductor-fission/meta.yaml b/recipes/bioconductor-fission/meta.yaml
index 3dc988c615684..113cdd94fae1d 100644
--- a/recipes/bioconductor-fission/meta.yaml
+++ b/recipes/bioconductor-fission/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "fission" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: bf744d1be1f95417b4379e55aadfcef3
+  md5: 7d404509808bfc439270093b647ccd80
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fission", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, markdown
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-fission/post-link.sh b/recipes/bioconductor-fission/post-link.sh
index e8b0b2176a5b1..e0380f99e57cd 100644
--- a/recipes/bioconductor-fission/post-link.sh
+++ b/recipes/bioconductor-fission/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "fission-1.20.0"
+installBiocDataPackage.sh "fission-1.22.0"
diff --git a/recipes/bioconductor-fitcons.ucsc.hg19/meta.yaml b/recipes/bioconductor-fitcons.ucsc.hg19/meta.yaml
index 9e954926a6341..8d3045a648c6b 100644
--- a/recipes/bioconductor-fitcons.ucsc.hg19/meta.yaml
+++ b/recipes/bioconductor-fitcons.ucsc.hg19/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.7.1" %}
 {% set name = "fitCons.UCSC.hg19" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,30 +13,31 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 53d954890ec9b91084664a10161ce391
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fitcons.ucsc.hg19", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-fithic/meta.yaml b/recipes/bioconductor-fithic/meta.yaml
index bc8693d7cc3d1..adf18559a5108 100644
--- a/recipes/bioconductor-fithic/meta.yaml
+++ b/recipes/bioconductor-fithic/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "FitHiC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e2333d06cb1378d9cd9301db5988bb7c
+  md5: ee894d402d0c5567935ade4f8dc75c29
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fithic", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown
 requirements:
   host:
diff --git a/recipes/bioconductor-flagme/meta.yaml b/recipes/bioconductor-flagme/meta.yaml
index 8f1e4e65d55c1..90086340aa522 100644
--- a/recipes/bioconductor-flagme/meta.yaml
+++ b/recipes/bioconductor-flagme/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.56.0" %}
+{% set version = "1.58.0" %}
 {% set name = "flagme" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 59bf39feefe5d755928a32e05016cf6b
+  md5: ada68435478c0172b282919125008b1f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flagme", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-camera >=1.56.0,<1.57.0'
-    - 'bioconductor-gcspikelite >=1.38.0,<1.39.0'
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-camera >=1.58.0,<1.59.0'
+    - 'bioconductor-gcspikelite >=1.40.0,<1.41.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-base
     - r-gplots
     - r-mass
@@ -29,9 +30,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-camera >=1.56.0,<1.57.0'
-    - 'bioconductor-gcspikelite >=1.38.0,<1.39.0'
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-camera >=1.58.0,<1.59.0'
+    - 'bioconductor-gcspikelite >=1.40.0,<1.41.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-base
     - r-gplots
     - r-mass
diff --git a/recipes/bioconductor-flames/meta.yaml b/recipes/bioconductor-flames/meta.yaml
index 03331b8783b03..05cea2c22df0e 100644
--- a/recipes/bioconductor-flames/meta.yaml
+++ b/recipes/bioconductor-flames/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "FLAMES" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,41 +11,45 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 94fd7ed1565fc08d6f858123b0aa23b3
+  md5: ecfe856c54464ffd2c27f8e10063d494
 build:
+  skip: True  # [osx]
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flames", max_pin="x.x") }}'
 # Suggests: BiocStyle, GEOquery, knitr, rmarkdown, markdown, BiocFileCache, R.utils, ShortRead, uwot, testthat (>= 3.0.0)
-# SystemRequirements: GNU make, C++11
+# SystemRequirements: GNU make, C++17
 requirements:
   host:
-    - 'bioconductor-bambu >=3.2.0,<3.3.0'
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-dropletutils >=1.20.0,<1.21.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-bambu >=3.4.0,<3.5.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-dropletutils >=1.22.0,<1.23.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-circlize
     - r-cowplot
     - r-dplyr
+    - r-future
     - r-ggplot2
     - r-gridextra
     - r-igraph
@@ -61,31 +65,33 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-bambu >=3.2.0,<3.3.0'
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-dropletutils >=1.20.0,<1.21.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-bambu >=3.4.0,<3.5.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-dropletutils >=1.22.0,<1.23.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-circlize
     - r-cowplot
     - r-dplyr
+    - r-future
     - r-ggplot2
     - r-gridextra
     - r-igraph
diff --git a/recipes/bioconductor-fletcher2013a/meta.yaml b/recipes/bioconductor-fletcher2013a/meta.yaml
index ba4901cef0bb8..e4bd34e45937a 100644
--- a/recipes/bioconductor-fletcher2013a/meta.yaml
+++ b/recipes/bioconductor-fletcher2013a/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "Fletcher2013a" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 69ea86d2f1e6aa8e8716c4db65f81cf0
+  md5: e4c4f9a4e8b24a7a72f9c63337a0eef9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fletcher2013a", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-gplots
     - r-venndiagram
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-gplots
     - r-venndiagram
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-fletcher2013a/post-link.sh b/recipes/bioconductor-fletcher2013a/post-link.sh
index 76947f653f606..36042cfbda031 100644
--- a/recipes/bioconductor-fletcher2013a/post-link.sh
+++ b/recipes/bioconductor-fletcher2013a/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "fletcher2013a-1.36.0"
+installBiocDataPackage.sh "fletcher2013a-1.38.0"
diff --git a/recipes/bioconductor-fletcher2013b/meta.yaml b/recipes/bioconductor-fletcher2013b/meta.yaml
index 278b7c8f0bb5a..5c2e191438443 100644
--- a/recipes/bioconductor-fletcher2013b/meta.yaml
+++ b/recipes/bioconductor-fletcher2013b/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "Fletcher2013b" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fd7177b33cc525534e80c197f4a14b0b
+  md5: cf656c92425c8a63ef584be08e8b742e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fletcher2013b", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-fletcher2013a >=1.36.0,<1.37.0'
-    - 'bioconductor-reder >=2.4.0,<2.5.0'
-    - 'bioconductor-rtn >=2.24.0,<2.25.0'
+    - 'bioconductor-fletcher2013a >=1.38.0,<1.39.0'
+    - 'bioconductor-reder >=2.6.0,<2.7.0'
+    - 'bioconductor-rtn >=2.26.0,<2.27.0'
     - r-base
     - r-igraph
     - r-rcolorbrewer
   run:
-    - 'bioconductor-fletcher2013a >=1.36.0,<1.37.0'
-    - 'bioconductor-reder >=2.4.0,<2.5.0'
-    - 'bioconductor-rtn >=2.24.0,<2.25.0'
+    - 'bioconductor-fletcher2013a >=1.38.0,<1.39.0'
+    - 'bioconductor-reder >=2.6.0,<2.7.0'
+    - 'bioconductor-rtn >=2.26.0,<2.27.0'
     - r-base
     - r-igraph
     - r-rcolorbrewer
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-fletcher2013b/post-link.sh b/recipes/bioconductor-fletcher2013b/post-link.sh
index d9bf248107be3..94b06ce4f03df 100644
--- a/recipes/bioconductor-fletcher2013b/post-link.sh
+++ b/recipes/bioconductor-fletcher2013b/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "fletcher2013b-1.36.0"
+installBiocDataPackage.sh "fletcher2013b-1.38.0"
diff --git a/recipes/bioconductor-flowai/meta.yaml b/recipes/bioconductor-flowai/meta.yaml
index 7a54cd4064d1c..2a294b9332201 100644
--- a/recipes/bioconductor-flowai/meta.yaml
+++ b/recipes/bioconductor-flowai/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "flowAI" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d59cf6bed0f7b6837d83b2e9fd90573b
+  md5: 714cb015ac01ee026e02fc24536770e5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowai", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, shiny, BiocStyle
 requirements:
   host:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-changepoint
     - r-ggplot2
@@ -32,7 +33,7 @@ requirements:
     - r-rmarkdown
     - r-scales
   run:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-changepoint
     - r-ggplot2
diff --git a/recipes/bioconductor-flowbeads/meta.yaml b/recipes/bioconductor-flowbeads/meta.yaml
index 19e782c06a121..275b1e5c29f2b 100644
--- a/recipes/bioconductor-flowbeads/meta.yaml
+++ b/recipes/bioconductor-flowbeads/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "flowBeads" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1e744c88fbbc189754bb9e3006333355
+  md5: 3c9aa4f78c8b1b2397d6004773311174
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowbeads", max_pin="x.x") }}'
   noarch: generic
 # Suggests: flowViz
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-knitr
     - r-rrcov
     - r-xtable
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-knitr
     - r-rrcov
diff --git a/recipes/bioconductor-flowbin/meta.yaml b/recipes/bioconductor-flowbin/meta.yaml
index b202a7db84c28..50962c3a7aee2 100644
--- a/recipes/bioconductor-flowbin/meta.yaml
+++ b/recipes/bioconductor-flowbin/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "flowBin" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 60f858355d66f8ee8f09f2968d82a440
+  md5: 3d761d597ff6b4f6929e9f68ea83b366
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowbin", max_pin="x.x") }}'
   noarch: generic
 # Suggests: parallel
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowfp >=1.58.0,<1.59.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowfp >=1.60.0,<1.61.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-class
     - r-snow
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowfp >=1.58.0,<1.59.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowfp >=1.60.0,<1.61.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-class
     - r-snow
diff --git a/recipes/bioconductor-flowcatchr/meta.yaml b/recipes/bioconductor-flowcatchr/meta.yaml
index 538ea1b9f3d0c..5f47ecd63335c 100644
--- a/recipes/bioconductor-flowcatchr/meta.yaml
+++ b/recipes/bioconductor-flowcatchr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "flowcatchR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 91c941bf107a4f973859adcd584d0ac2
+  md5: a823367e5e1e432980ca41c1516c97f2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowcatchr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 # SystemRequirements: ImageMagick
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
     - r-abind
     - r-base
     - r-colorramps
@@ -31,8 +32,8 @@ requirements:
     - r-shiny
     - imagemagick
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
     - r-abind
     - r-base
     - r-colorramps
diff --git a/recipes/bioconductor-flowchic/meta.yaml b/recipes/bioconductor-flowchic/meta.yaml
index a6bad36cb85d0..2aaf6235bb116 100644
--- a/recipes/bioconductor-flowchic/meta.yaml
+++ b/recipes/bioconductor-flowchic/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "flowCHIC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 72229b8e073b7f7beaab5d3718dfdc2e
+  md5: 72e50628c116c31eebd78d620514dca1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowchic", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-ggplot2
     - r-hexbin
     - r-vegan
   run:
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-ggplot2
     - r-hexbin
diff --git a/recipes/bioconductor-flowclean/meta.yaml b/recipes/bioconductor-flowclean/meta.yaml
index 6fe89720fe2ee..02be800eea903 100644
--- a/recipes/bioconductor-flowclean/meta.yaml
+++ b/recipes/bioconductor-flowclean/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "flowClean" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cd29baeeed9e6883aeb1dd592ec63e82
+  md5: 77f86a84c8ed6dbd2df24d9458765205
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowclean", max_pin="x.x") }}'
   noarch: generic
 # Suggests: flowViz, grid, gridExtra
 requirements:
   host:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-bit
     - r-changepoint
     - r-sfsmisc
   run:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-bit
     - r-changepoint
diff --git a/recipes/bioconductor-flowclust/meta.yaml b/recipes/bioconductor-flowclust/meta.yaml
index 1c81b8b9cc239..e23f51ab272d9 100644
--- a/recipes/bioconductor-flowclust/meta.yaml
+++ b/recipes/bioconductor-flowclust/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.38.0" %}
+{% set version = "3.40.0" %}
 {% set name = "flowClust" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 843149c02cec1b6eedac82c6faf3ecd0
+  md5: 50e5d774ae44b8aaca69069733c175e3
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowclust", max_pin="x.x") }}'
 # Suggests: testthat, flowWorkspace, flowWorkspaceData, knitr, rmarkdown, openCyto, flowStats(>= 4.7.1)
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
   build:
     - {{ compiler('c') }}
@@ -47,3 +48,9 @@ about:
   summary: 'Clustering for Flow Cytometry'
   description: 'Robust model-based clustering using a t-mixture model with Box-Cox transformation. Note: users should have GSL installed. Windows users: ''consult the README file available in the inst directory of the source distribution for necessary configuration instructions''.'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
+
diff --git a/recipes/bioconductor-flowcore/meta.yaml b/recipes/bioconductor-flowcore/meta.yaml
index 5c0b25e087f4f..f5a254a4c935c 100644
--- a/recipes/bioconductor-flowcore/meta.yaml
+++ b/recipes/bioconductor-flowcore/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.12.0" %}
+{% set version = "2.14.0" %}
 {% set name = "flowCore" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 46283d4ef07328f5a7824471bbd6e2ef
+  md5: 3b0696fd3fc45a87531ab3503be00277
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowcore", max_pin="x.x") }}'
 # Suggests: Rgraphviz, flowViz, flowStats (>= 3.43.4), testthat, flowWorkspace, flowWorkspaceData, openCyto, knitr, ggcyto, gridExtra
 # SystemRequirements: GNU make, C++11
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-cytolib >=2.12.0,<2.13.0'
-    - 'bioconductor-rprotobuflib >=2.12.0,<2.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-cytolib >=2.14.0,<2.15.0'
+    - 'bioconductor-rprotobuflib >=2.14.0,<2.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
-    - 'r-bh >=1.65.0.1'
+    - 'r-bh >=1.81.0.0'
     - r-cpp11
     - r-matrixstats
     - r-rcpp
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-cytolib >=2.12.0,<2.13.0'
-    - 'bioconductor-rprotobuflib >=2.12.0,<2.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-cytolib >=2.14.0,<2.15.0'
+    - 'bioconductor-rprotobuflib >=2.14.0,<2.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
-    - 'r-bh >=1.65.0.1'
+    - 'r-bh >=1.81.0.0'
     - r-cpp11
     - r-matrixstats
     - r-rcpp
@@ -57,6 +58,8 @@ about:
   summary: 'flowCore: Basic structures for flow cytometry data'
   description: 'Provides S4 data structures and basic functions to deal with flow cytometry data.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:flowcore
     - doi:10.1186/1471-2105-10-106
diff --git a/recipes/bioconductor-flowcut/meta.yaml b/recipes/bioconductor-flowcut/meta.yaml
index a9b4ed4154841..f60fa58a8ac7a 100644
--- a/recipes/bioconductor-flowcut/meta.yaml
+++ b/recipes/bioconductor-flowcut/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "flowCut" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a879badc8fb1ccd7f4bd8b7fdf560255
+  md5: b79bc38dd887cef19040c2d7178311d0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowcut", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, knitr, markdown, rmarkdown
 requirements:
   host:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowdensity >=1.34.0,<1.35.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowdensity >=1.36.0,<1.37.0'
     - r-base
     - r-cairo
     - r-e1071
   run:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowdensity >=1.34.0,<1.35.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowdensity >=1.36.0,<1.37.0'
     - r-base
     - r-cairo
     - r-e1071
diff --git a/recipes/bioconductor-flowcybar/meta.yaml b/recipes/bioconductor-flowcybar/meta.yaml
index f0290c51cd3ae..cf71a394b6ac8 100644
--- a/recipes/bioconductor-flowcybar/meta.yaml
+++ b/recipes/bioconductor-flowcybar/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "flowCyBar" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5666ea536602365882d54be550274877
+  md5: 9236c02598960d4536906fb7449a7dd4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowcybar", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-flowdensity/meta.yaml b/recipes/bioconductor-flowdensity/meta.yaml
index f4be69a59e827..7a7978ac58c3d 100644
--- a/recipes/bioconductor-flowdensity/meta.yaml
+++ b/recipes/bioconductor-flowdensity/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.1" %}
 {% set name = "flowDensity" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,37 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9582e24db40a4754b375f0ee675bf635
+  md5: 30c661d010484bff6c2eb427a7056aa1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowdensity", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr,rmarkdown
 # SystemRequirements: xml2, GNU make, C++11
 requirements:
   host:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowviz >=1.64.0,<1.65.0'
-    - 'bioconductor-flowworkspace >=4.12.0,<4.13.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowviz >=1.66.0,<1.67.0'
     - r-base
     - r-car
     - r-gplots
-    - r-rfoc
-    - r-rgeos
-    - r-sp
+    - r-polyclip
     - libxml2
   run:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowviz >=1.64.0,<1.65.0'
-    - 'bioconductor-flowworkspace >=4.12.0,<4.13.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowviz >=1.66.0,<1.67.0'
     - r-base
     - r-car
     - r-gplots
-    - r-rfoc
-    - r-rgeos
-    - r-sp
+    - r-polyclip
     - libxml2
 test:
   commands:
diff --git a/recipes/bioconductor-flowfp/meta.yaml b/recipes/bioconductor-flowfp/meta.yaml
index 447cd63812bb6..8d91ab91bc4af 100644
--- a/recipes/bioconductor-flowfp/meta.yaml
+++ b/recipes/bioconductor-flowfp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.58.0" %}
+{% set version = "1.60.0" %}
 {% set name = "flowFP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0a826a5cf4c655b5f0fc9d5f80655f30
+  md5: 5f0424d8a662d2d65bacbcff080d9c7a
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowfp", max_pin="x.x") }}'
 # Suggests: RUnit
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowviz >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowviz >=1.66.0,<1.67.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowviz >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowviz >=1.66.0,<1.67.0'
     - r-base
   build:
     - {{ compiler('c') }}
@@ -46,6 +47,8 @@ about:
   summary: 'Fingerprinting for Flow Cytometry'
   description: 'Fingerprint generation of flow cytometry data, used to facilitate the application of machine learning and datamining tools for flow cytometry.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:flowfp
     - doi:10.1155/2009/193947
diff --git a/recipes/bioconductor-flowgate/meta.yaml b/recipes/bioconductor-flowgate/meta.yaml
index b9a3005511cce..c565637710606 100644
--- a/recipes/bioconductor-flowgate/meta.yaml
+++ b/recipes/bioconductor-flowgate/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "flowGate" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 06253e3ee0f40cfd6446ec6aba2a4562
+  md5: d5b19dee6139d26306d14563f445a64f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowgate", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, stringr, tidyverse, testthat
 requirements:
   host:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowworkspace >=4.12.0,<4.13.0'
-    - 'bioconductor-ggcyto >=1.28.0,<1.29.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowworkspace >=4.14.0,<4.15.0'
+    - 'bioconductor-ggcyto >=1.30.0,<1.31.0'
     - r-base
     - 'r-biocmanager >=1.30.10'
     - 'r-dplyr >=1.0.0'
@@ -33,9 +34,9 @@ requirements:
     - 'r-shiny >=1.5.0'
     - r-tibble
   run:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowworkspace >=4.12.0,<4.13.0'
-    - 'bioconductor-ggcyto >=1.28.0,<1.29.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowworkspace >=4.14.0,<4.15.0'
+    - 'bioconductor-ggcyto >=1.30.0,<1.31.0'
     - r-base
     - 'r-biocmanager >=1.30.10'
     - 'r-dplyr >=1.0.0'
diff --git a/recipes/bioconductor-flowgraph/meta.yaml b/recipes/bioconductor-flowgraph/meta.yaml
index 0cb0ad7fa10fe..a0e5db9f2c1f9 100644
--- a/recipes/bioconductor-flowgraph/meta.yaml
+++ b/recipes/bioconductor-flowgraph/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "flowGraph" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ae032bd4f1c462d1643902facf008dd6
+  md5: 68abd457f6a200f435ebbf41183c0e94
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowgraph", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, dplyr, knitr, rmarkdown, testthat (>= 2.1.0)
 requirements:
diff --git a/recipes/bioconductor-flowmatch/meta.yaml b/recipes/bioconductor-flowmatch/meta.yaml
index cfb3a59262ef2..c27636b543ddd 100644
--- a/recipes/bioconductor-flowmatch/meta.yaml
+++ b/recipes/bioconductor-flowmatch/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "flowMatch" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2642ae3123f2b7fa6715d5f23a1d76bc
+  md5: 78b2b9dc87eec35dbc65c59dadb1ffd9
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowmatch", max_pin="x.x") }}'
 # Suggests: healthyFlowData
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - 'r-rcpp >=0.11.0'
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - 'r-rcpp >=0.11.0'
   build:
@@ -44,6 +45,8 @@ about:
   summary: 'Matching and meta-clustering in flow cytometry'
   description: 'Matching cell populations and building meta-clusters and templates from a collection of FC samples.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:flowmatch
     - doi:10.1038/nmeth.3252
diff --git a/recipes/bioconductor-flowmeans/meta.yaml b/recipes/bioconductor-flowmeans/meta.yaml
index c33e164d34bfd..4830d38e0f6a9 100644
--- a/recipes/bioconductor-flowmeans/meta.yaml
+++ b/recipes/bioconductor-flowmeans/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.60.0" %}
+{% set version = "1.62.0" %}
 {% set name = "flowMeans" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 907da9157eecd2bcf4ff53536254bbc9
+  md5: 5cbb796502f09bf65cae60e4f0f53c1f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowmeans", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-feature
     - r-rrcov
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-feature
     - r-rrcov
diff --git a/recipes/bioconductor-flowmerge/meta.yaml b/recipes/bioconductor-flowmerge/meta.yaml
index 63020aae225c2..cb220a14afbac 100644
--- a/recipes/bioconductor-flowmerge/meta.yaml
+++ b/recipes/bioconductor-flowmerge/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.48.0" %}
+{% set version = "2.50.0" %}
 {% set name = "flowMerge" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f0c37b4e9c43ab26edaae92dd9b1fb2e
+  md5: c0d4d124e3d94a0eab8fc138f9044d2c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowmerge", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-flowclust >=3.38.0,<3.39.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-flowclust >=3.40.0,<3.41.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-feature
     - r-foreach
     - r-rrcov
     - r-snow
   run:
-    - 'bioconductor-flowclust >=3.38.0,<3.39.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-flowclust >=3.40.0,<3.41.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-feature
     - r-foreach
diff --git a/recipes/bioconductor-flowpeaks/meta.yaml b/recipes/bioconductor-flowpeaks/meta.yaml
index 4965ed48624d1..dad0728d2ef7d 100644
--- a/recipes/bioconductor-flowpeaks/meta.yaml
+++ b/recipes/bioconductor-flowpeaks/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "flowPeaks" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d8481859adf962408c139342e9eac893
+  md5: f68db373a0d053a7eabd112df80a25f1
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowpeaks", max_pin="x.x") }}'
 # SystemRequirements: gsl
 requirements:
   host:
@@ -40,6 +41,8 @@ about:
   summary: 'An R package for flow data clustering'
   description: 'A fast and automatic clustering to classify the cells into subpopulations based on finding the peaks from the overall density function generated by K-means.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:flowpeaks
   parent_recipe:
diff --git a/recipes/bioconductor-flowploidy/meta.yaml b/recipes/bioconductor-flowploidy/meta.yaml
index b71d6983cf655..c1569c3b88b46 100644
--- a/recipes/bioconductor-flowploidy/meta.yaml
+++ b/recipes/bioconductor-flowploidy/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "flowPloidy" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 14afd95deaa59263b9e2ccc3140cb5a0
+  md5: 1020981a0f645d2dcbf1a38a3e42b7e0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowploidy", max_pin="x.x") }}'
   noarch: generic
 # Suggests: flowPloidyData, testthat
 requirements:
   host:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-car
     - r-catools
@@ -30,7 +31,7 @@ requirements:
     - r-rmarkdown
     - r-shiny
   run:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-car
     - r-catools
diff --git a/recipes/bioconductor-flowploidydata/meta.yaml b/recipes/bioconductor-flowploidydata/meta.yaml
index 29f71f910219a..1df2c16869432 100644
--- a/recipes/bioconductor-flowploidydata/meta.yaml
+++ b/recipes/bioconductor-flowploidydata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "flowPloidyData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 10d8e5d5d636d7a78c7dd5aa79ba41a4
+  md5: 993a663f6d1cdc791c3f4e88d5b3b047
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowploidydata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, flowCore
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-flowploidydata/post-link.sh b/recipes/bioconductor-flowploidydata/post-link.sh
index d1acd28276c1f..dbb4d93fd487f 100644
--- a/recipes/bioconductor-flowploidydata/post-link.sh
+++ b/recipes/bioconductor-flowploidydata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "flowploidydata-1.26.0"
+installBiocDataPackage.sh "flowploidydata-1.28.0"
diff --git a/recipes/bioconductor-flowplots/meta.yaml b/recipes/bioconductor-flowplots/meta.yaml
index da76dc7f6737a..e7893a2db7cac 100644
--- a/recipes/bioconductor-flowplots/meta.yaml
+++ b/recipes/bioconductor-flowplots/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "flowPlots" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6960c2567067f71bab67d0de646533ad
+  md5: 523b0d79646813f56d711d3e0f38a5e9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowplots", max_pin="x.x") }}'
   noarch: generic
 # Suggests: vcd
 requirements:
diff --git a/recipes/bioconductor-flowsom/meta.yaml b/recipes/bioconductor-flowsom/meta.yaml
index 69e70f2f2330d..b149ec1e272b1 100644
--- a/recipes/bioconductor-flowsom/meta.yaml
+++ b/recipes/bioconductor-flowsom/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.8.0" %}
+{% set version = "2.10.0" %}
 {% set name = "FlowSOM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c801e147f4137a9b7c5157f8536e44c3
+  md5: 9bc309cc9948473d101d91ba6f1a37f2
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowsom", max_pin="x.x") }}'
 # Suggests: BiocStyle, testthat, CytoML, flowWorkspace, ggrepel, scattermore, pheatmap, ggpointdensity
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-consensusclusterplus >=1.64.0,<1.65.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-consensusclusterplus >=1.66.0,<1.67.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-colorramps
     - r-dplyr
@@ -39,9 +40,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-consensusclusterplus >=1.64.0,<1.65.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-consensusclusterplus >=1.66.0,<1.67.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-colorramps
     - r-dplyr
@@ -63,11 +64,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'GPL (>= 2)'
+  license: 'GPL-3.0-or-later'
   summary: 'Using self-organizing maps for visualization and interpretation of cytometry data'
   description: 'FlowSOM offers visualization options for cytometry data, by using Self-Organizing Map clustering and Minimal Spanning Trees.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:flowsom
     - doi:10.1002/cyto.a.22625
diff --git a/recipes/bioconductor-flowsorted.blood.450k/meta.yaml b/recipes/bioconductor-flowsorted.blood.450k/meta.yaml
index 828f4aae39fba..9c9dcba953274 100644
--- a/recipes/bioconductor-flowsorted.blood.450k/meta.yaml
+++ b/recipes/bioconductor-flowsorted.blood.450k/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "FlowSorted.Blood.450k" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 68977c1bf508dda29bc067929aecc006
+  md5: f88422c2d8a2f7ce4ca968292adfc8ab
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowsorted.blood.450k", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-flowsorted.blood.450k/post-link.sh b/recipes/bioconductor-flowsorted.blood.450k/post-link.sh
index c04ffe255ad90..291888eff33cc 100644
--- a/recipes/bioconductor-flowsorted.blood.450k/post-link.sh
+++ b/recipes/bioconductor-flowsorted.blood.450k/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "flowsorted.blood.450k-1.38.0"
+installBiocDataPackage.sh "flowsorted.blood.450k-1.40.0"
diff --git a/recipes/bioconductor-flowsorted.blood.epic/meta.yaml b/recipes/bioconductor-flowsorted.blood.epic/meta.yaml
index a4e32da09fc49..90ba4f67f6423 100644
--- a/recipes/bioconductor-flowsorted.blood.epic/meta.yaml
+++ b/recipes/bioconductor-flowsorted.blood.epic/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.4.2" %}
+{% set version = "2.6.0" %}
 {% set name = "FlowSorted.Blood.EPIC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,37 +11,38 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4d9d98db39792aac4fe1ec1db0b0366b
+  md5: e94cbb0480a032595cdb5d9714065bed
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowsorted.blood.epic", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr,rmarkdown, FlowSorted.CordBlood.450k, FlowSorted.Blood.450k(>= 1.0.1), EpiDISH,FlowSorted.CordBloodNorway.450k, testthat, IlluminaHumanMethylation450kmanifest(>= 0.2.0), IlluminaHumanMethylationEPICmanifest, IlluminaHumanMethylation450kanno.ilmn12.hg19(>= 0.2.1), IlluminaHumanMethylationEPICanno.ilm10b4.hg19
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-nlme
     - r-quadprog
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-nlme
     - r-quadprog
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-flowsorted.blood.epic/post-link.sh b/recipes/bioconductor-flowsorted.blood.epic/post-link.sh
index 7d84a33bceaaf..82feccd703411 100644
--- a/recipes/bioconductor-flowsorted.blood.epic/post-link.sh
+++ b/recipes/bioconductor-flowsorted.blood.epic/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "flowsorted.blood.epic-2.4.2"
+installBiocDataPackage.sh "flowsorted.blood.epic-2.6.0"
diff --git a/recipes/bioconductor-flowsorted.cordblood.450k/meta.yaml b/recipes/bioconductor-flowsorted.cordblood.450k/meta.yaml
index 26dde86b085e7..20523ec1de672 100644
--- a/recipes/bioconductor-flowsorted.cordblood.450k/meta.yaml
+++ b/recipes/bioconductor-flowsorted.cordblood.450k/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "FlowSorted.CordBlood.450k" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: dbef432e31c78c82fe4498a341d3a5a8
+  md5: fca81b7412af68100d7aed4d57d5fc59
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowsorted.cordblood.450k", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-flowsorted.cordblood.450k/post-link.sh b/recipes/bioconductor-flowsorted.cordblood.450k/post-link.sh
index 3d72e98279d82..0b82dabf176d0 100644
--- a/recipes/bioconductor-flowsorted.cordblood.450k/post-link.sh
+++ b/recipes/bioconductor-flowsorted.cordblood.450k/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "flowsorted.cordblood.450k-1.28.0"
+installBiocDataPackage.sh "flowsorted.cordblood.450k-1.30.0"
diff --git a/recipes/bioconductor-flowsorted.cordbloodcombined.450k/meta.yaml b/recipes/bioconductor-flowsorted.cordbloodcombined.450k/meta.yaml
index 57947ff21176b..6aef7e141a811 100644
--- a/recipes/bioconductor-flowsorted.cordbloodcombined.450k/meta.yaml
+++ b/recipes/bioconductor-flowsorted.cordbloodcombined.450k/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "FlowSorted.CordBloodCombined.450k" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0579c0d8bcb50c77d579b082a7bf4158
+  md5: 769113b80606820ab2918dcacf1076b2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowsorted.cordbloodcombined.450k", max_pin="x.x") }}'
   noarch: generic
 # Suggests: FlowSorted.Blood.EPIC, knitr, rmarkdown, testthat, IlluminaHumanMethylation450kmanifest(>= 0.2.0), IlluminaHumanMethylationEPICanno.ilm10b2.hg19
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19 >=0.6.0,<0.7.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19 >=0.6.0,<0.7.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-flowsorted.cordbloodcombined.450k/post-link.sh b/recipes/bioconductor-flowsorted.cordbloodcombined.450k/post-link.sh
index b4b08defd7136..c540b53ecf269 100644
--- a/recipes/bioconductor-flowsorted.cordbloodcombined.450k/post-link.sh
+++ b/recipes/bioconductor-flowsorted.cordbloodcombined.450k/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "flowsorted.cordbloodcombined.450k-1.16.0"
+installBiocDataPackage.sh "flowsorted.cordbloodcombined.450k-1.18.0"
diff --git a/recipes/bioconductor-flowsorted.cordbloodnorway.450k/meta.yaml b/recipes/bioconductor-flowsorted.cordbloodnorway.450k/meta.yaml
index 90c84b67f76c8..13471afc01d9a 100644
--- a/recipes/bioconductor-flowsorted.cordbloodnorway.450k/meta.yaml
+++ b/recipes/bioconductor-flowsorted.cordbloodnorway.450k/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "FlowSorted.CordBloodNorway.450k" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5a399952bf229258fe47964a8d3db910
+  md5: 40016224becf643102bc3054f4e2508d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowsorted.cordbloodnorway.450k", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-flowsorted.cordbloodnorway.450k/post-link.sh b/recipes/bioconductor-flowsorted.cordbloodnorway.450k/post-link.sh
index 504978723041e..142aa56ecf3a3 100644
--- a/recipes/bioconductor-flowsorted.cordbloodnorway.450k/post-link.sh
+++ b/recipes/bioconductor-flowsorted.cordbloodnorway.450k/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "flowsorted.cordbloodnorway.450k-1.26.0"
+installBiocDataPackage.sh "flowsorted.cordbloodnorway.450k-1.28.0"
diff --git a/recipes/bioconductor-flowsorted.dlpfc.450k/meta.yaml b/recipes/bioconductor-flowsorted.dlpfc.450k/meta.yaml
index f0f6ed40e091e..b9bfdbe04b88e 100644
--- a/recipes/bioconductor-flowsorted.dlpfc.450k/meta.yaml
+++ b/recipes/bioconductor-flowsorted.dlpfc.450k/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "FlowSorted.DLPFC.450k" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fb70a712a95eaa879d62d7751567aed5
+  md5: ad95a51f7e8bcf7c0bec6dda80eb0a92
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowsorted.dlpfc.450k", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-flowsorted.dlpfc.450k/post-link.sh b/recipes/bioconductor-flowsorted.dlpfc.450k/post-link.sh
index dc693b027192e..bdd7e31f4b074 100644
--- a/recipes/bioconductor-flowsorted.dlpfc.450k/post-link.sh
+++ b/recipes/bioconductor-flowsorted.dlpfc.450k/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "flowsorted.dlpfc.450k-1.36.0"
+installBiocDataPackage.sh "flowsorted.dlpfc.450k-1.38.0"
diff --git a/recipes/bioconductor-flowspecs/meta.yaml b/recipes/bioconductor-flowspecs/meta.yaml
index a695590b17669..f3dea0389b41d 100644
--- a/recipes/bioconductor-flowspecs/meta.yaml
+++ b/recipes/bioconductor-flowspecs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "flowSpecs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 84af2116cc90cb4c1df4b384ab9a232c
+  md5: 502f1e04027fab8076745a5386401f2e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowspecs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, BiocStyle, DepecheR
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - 'r-ggplot2 >=3.1.0'
     - 'r-reshape2 >=1.4.3'
     - 'r-zoo >=1.8.6'
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - 'r-ggplot2 >=3.1.0'
     - 'r-reshape2 >=1.4.3'
diff --git a/recipes/bioconductor-flowstats/meta.yaml b/recipes/bioconductor-flowstats/meta.yaml
index f9909cc9d27de..6ea2f22d7384f 100644
--- a/recipes/bioconductor-flowstats/meta.yaml
+++ b/recipes/bioconductor-flowstats/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "4.12.0" %}
+{% set version = "4.14.0" %}
 {% set name = "flowStats" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 730df788ab11668488ede56d8c65362c
+  md5: 2817bb2cbd74b07bb948d0988be2a57e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowstats", max_pin="x.x") }}'
   noarch: generic
 # Suggests: xtable, testthat, openCyto, ggcyto, ggridges
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowviz >=1.64.0,<1.65.0'
-    - 'bioconductor-flowworkspace >=4.12.0,<4.13.0'
-    - 'bioconductor-ncdfflow >=2.46.0,<2.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowviz >=1.66.0,<1.67.0'
+    - 'bioconductor-flowworkspace >=4.14.0,<4.15.0'
+    - 'bioconductor-ncdfflow >=2.48.0,<2.49.0'
     - r-base
+    - r-clue
     - r-cluster
     - r-corpcor
     - 'r-fda >=2.2.6'
@@ -39,13 +41,14 @@ requirements:
     - r-rcolorbrewer
     - r-rrcov
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowviz >=1.64.0,<1.65.0'
-    - 'bioconductor-flowworkspace >=4.12.0,<4.13.0'
-    - 'bioconductor-ncdfflow >=2.46.0,<2.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowviz >=1.66.0,<1.67.0'
+    - 'bioconductor-flowworkspace >=4.14.0,<4.15.0'
+    - 'bioconductor-ncdfflow >=2.48.0,<2.49.0'
     - r-base
+    - r-clue
     - r-cluster
     - r-corpcor
     - 'r-fda >=2.2.6'
diff --git a/recipes/bioconductor-flowtime/meta.yaml b/recipes/bioconductor-flowtime/meta.yaml
index b684b98a569de..eb87ab80635af 100644
--- a/recipes/bioconductor-flowtime/meta.yaml
+++ b/recipes/bioconductor-flowtime/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "flowTime" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 00a06c20b516ba2a70acecd10b8c73cc
+  md5: 04ca452b54e7309493c814844fc1b772
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowtime", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, flowViz, ggplot2, BiocGenerics, stats, flowClust, openCyto, flowStats, ggcyto
 requirements:
   host:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - 'r-dplyr >=1.0.0'
     - r-magrittr
@@ -29,7 +30,7 @@ requirements:
     - r-rlang
     - r-tibble
   run:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - 'r-dplyr >=1.0.0'
     - r-magrittr
diff --git a/recipes/bioconductor-flowtrans/meta.yaml b/recipes/bioconductor-flowtrans/meta.yaml
index e5cc7f9552b92..ebddba32b3bfd 100644
--- a/recipes/bioconductor-flowtrans/meta.yaml
+++ b/recipes/bioconductor-flowtrans/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.52.0" %}
+{% set version = "1.54.0" %}
 {% set name = "flowTrans" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 362e389a46df4c08fbdacebb047a0b88
+  md5: d98daa4177e5f6b8cda8d8475e34c09a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowtrans", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-flowclust >=3.38.0,<3.39.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowviz >=1.64.0,<1.65.0'
+    - 'bioconductor-flowclust >=3.40.0,<3.41.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowviz >=1.66.0,<1.67.0'
     - r-base
   run:
-    - 'bioconductor-flowclust >=3.38.0,<3.39.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowviz >=1.64.0,<1.65.0'
+    - 'bioconductor-flowclust >=3.40.0,<3.41.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowviz >=1.66.0,<1.67.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-flowviz/meta.yaml b/recipes/bioconductor-flowviz/meta.yaml
index dd1d975d2d390..46eab38ac8366 100644
--- a/recipes/bioconductor-flowviz/meta.yaml
+++ b/recipes/bioconductor-flowviz/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.64.0" %}
+{% set version = "1.66.0" %}
 {% set name = "flowViz" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5c581bc7787fdf9bb136087fb6f966f5
+  md5: 320d8392618efe06e6c2a8923b3c6652
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowviz", max_pin="x.x") }}'
   noarch: generic
 # Suggests: colorspace, flowStats, knitr, rmarkdown, markdown, testthat
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-hexbin
     - r-idpmisc
@@ -32,8 +33,8 @@ requirements:
     - r-mass
     - r-rcolorbrewer
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-hexbin
     - r-idpmisc
diff --git a/recipes/bioconductor-flowvs/meta.yaml b/recipes/bioconductor-flowvs/meta.yaml
index 10f2837f82420..9469254038a37 100644
--- a/recipes/bioconductor-flowvs/meta.yaml
+++ b/recipes/bioconductor-flowvs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "flowVS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4a44cf1a01b17b9a3a28422aca0ac438
+  md5: 43fc57f2be5ccbfcff9ac9b9bc0bb857
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowvs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, vsn,
 requirements:
   host:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowstats >=4.12.0,<4.13.0'
-    - 'bioconductor-flowviz >=1.64.0,<1.65.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowstats >=4.14.0,<4.15.0'
+    - 'bioconductor-flowviz >=1.66.0,<1.67.0'
     - r-base
   run:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowstats >=4.12.0,<4.13.0'
-    - 'bioconductor-flowviz >=1.64.0,<1.65.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowstats >=4.14.0,<4.15.0'
+    - 'bioconductor-flowviz >=1.66.0,<1.67.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-flowworkspace/meta.yaml b/recipes/bioconductor-flowworkspace/meta.yaml
index 85970ddc4fd59..5df796f644a70 100644
--- a/recipes/bioconductor-flowworkspace/meta.yaml
+++ b/recipes/bioconductor-flowworkspace/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "4.12.0" %}
+{% set version = "4.14.0" %}
 {% set name = "flowWorkspace" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c8f80cf16553cc9099512c1c86c6f60d
+  md5: e97cd561c6a61ae778261cb55f29af90
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowworkspace", max_pin="x.x") }}'
 # Suggests: testthat, flowWorkspaceData (>= 2.23.2), knitr, rmarkdown, ggcyto, parallel, CytoML, openCyto
 # SystemRequirements: GNU make, C++11
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-cytolib >=2.12.0,<2.13.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-ncdfflow >=2.46.0,<2.47.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
-    - 'bioconductor-rprotobuflib >=2.12.0,<2.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-cytolib >=2.14.0,<2.15.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-ncdfflow >=2.48.0,<2.49.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
+    - 'bioconductor-rprotobuflib >=2.14.0,<2.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-bh >=1.62.0-1'
     - r-cpp11
@@ -45,18 +46,18 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-cytolib >=2.12.0,<2.13.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-ncdfflow >=2.46.0,<2.47.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
-    - 'bioconductor-rprotobuflib >=2.12.0,<2.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-cytolib >=2.14.0,<2.15.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-ncdfflow >=2.48.0,<2.49.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
+    - 'bioconductor-rprotobuflib >=2.14.0,<2.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-bh >=1.62.0-1'
     - r-cpp11
diff --git a/recipes/bioconductor-flowworkspacedata/meta.yaml b/recipes/bioconductor-flowworkspacedata/meta.yaml
index c9a33f5504dfb..ec95026f5f295 100644
--- a/recipes/bioconductor-flowworkspacedata/meta.yaml
+++ b/recipes/bioconductor-flowworkspacedata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.12.0" %}
+{% set version = "3.14.0" %}
 {% set name = "flowWorkspaceData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8d91993dd5a5c5b561a8063ec91046d3
+  md5: 96655cef2a21f1b9d303ec775597a2dc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-flowworkspacedata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-flowworkspacedata/post-link.sh b/recipes/bioconductor-flowworkspacedata/post-link.sh
index 4f4de031dce66..f0331f23198c7 100644
--- a/recipes/bioconductor-flowworkspacedata/post-link.sh
+++ b/recipes/bioconductor-flowworkspacedata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "flowworkspacedata-3.12.0"
+installBiocDataPackage.sh "flowworkspacedata-3.14.0"
diff --git a/recipes/bioconductor-fly.db0/meta.yaml b/recipes/bioconductor-fly.db0/meta.yaml
index 58fee2b2ea22c..0ed06aa0d7e48 100644
--- a/recipes/bioconductor-fly.db0/meta.yaml
+++ b/recipes/bioconductor-fly.db0/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "fly.db0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 04b3d22c5825c9a31f5253746df5c4e0
+  md5: 49722b8a538d02f71631a418b92c44d7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fly.db0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-fly.db0/post-link.sh b/recipes/bioconductor-fly.db0/post-link.sh
index 213a32552081d..3fab31db8f277 100644
--- a/recipes/bioconductor-fly.db0/post-link.sh
+++ b/recipes/bioconductor-fly.db0/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "fly.db0-3.17.0"
+installBiocDataPackage.sh "fly.db0-3.18.0"
diff --git a/recipes/bioconductor-fmcsr/meta.yaml b/recipes/bioconductor-fmcsr/meta.yaml
index f86bf2cd4b73e..d62cc7de82aea 100644
--- a/recipes/bioconductor-fmcsr/meta.yaml
+++ b/recipes/bioconductor-fmcsr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "fmcsR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2687c7aa47141346582b5b6dac68e906
+  md5: 21a6242a61cba8dd537bf846af3260c3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fmcsr", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, knitcitations, knitrBootstrap,rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-chemminer >=3.52.0,<3.53.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-chemminer >=3.54.0,<3.55.0'
     - r-base
     - r-runit
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-chemminer >=3.52.0,<3.53.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-chemminer >=3.54.0,<3.55.0'
     - r-base
     - r-runit
   build:
diff --git a/recipes/bioconductor-fmrs/meta.yaml b/recipes/bioconductor-fmrs/meta.yaml
index f858ab078409a..667e0c6c78dac 100644
--- a/recipes/bioconductor-fmrs/meta.yaml
+++ b/recipes/bioconductor-fmrs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "fmrs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 1f73155e7e3d066f5e59fedeb0dcd725
+  md5: ccf41504ab27d93464e555b363ef406a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fmrs", max_pin="x.x") }}'
 # Suggests: BiocGenerics, testthat, knitr, utils
 requirements:
   host:
diff --git a/recipes/bioconductor-fobitools/meta.yaml b/recipes/bioconductor-fobitools/meta.yaml
index 0d734261bb591..d9b0d175e64b0 100644
--- a/recipes/bioconductor-fobitools/meta.yaml
+++ b/recipes/bioconductor-fobitools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "fobitools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: fe95da3fe13e9bb17165048bbe6f4799
+  md5: 24ebda3aed06055ab55d7cdf88a7c2a0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fobitools", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, covr, ggrepel, kableExtra, knitr, metabolomicsWorkbenchR, POMA, rmarkdown, rvest, SummarizedExperiment, testthat (>= 2.3.2), tidyverse
 requirements:
   host:
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
     - r-base
     - r-clisymbols
     - r-crayon
@@ -39,7 +40,7 @@ requirements:
     - r-tidyr
     - r-vroom
   run:
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
     - r-base
     - r-clisymbols
     - r-crayon
diff --git a/recipes/bioconductor-fourdndata/meta.yaml b/recipes/bioconductor-fourdndata/meta.yaml
index fe82086bd827c..4b1339af9b5b5 100644
--- a/recipes/bioconductor-fourdndata/meta.yaml
+++ b/recipes/bioconductor-fourdndata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "fourDNData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2bea3be8c2abed679fc99cf6bdaee98f
+  md5: bca623e919f7c17a40ffb4eae27cfe59
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fourdndata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rtracklayer, dplyr, testthat, methods, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hicexperiment >=1.0.0,<1.1.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hicexperiment >=1.2.0,<1.3.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hicexperiment >=1.0.0,<1.1.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hicexperiment >=1.2.0,<1.3.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-fourdndata/post-link.sh b/recipes/bioconductor-fourdndata/post-link.sh
index b46b9ff5f46a2..f062b27931ef6 100644
--- a/recipes/bioconductor-fourdndata/post-link.sh
+++ b/recipes/bioconductor-fourdndata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "fourdndata-1.0.0"
+installBiocDataPackage.sh "fourdndata-1.2.0"
diff --git a/recipes/bioconductor-fraser/1.99.3/build.sh b/recipes/bioconductor-fraser/1.99.3/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-fraser/1.99.3/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-fraser/1.99.3/meta.yaml b/recipes/bioconductor-fraser/1.99.3/meta.yaml
new file mode 100644
index 0000000000000..e97f12240daa6
--- /dev/null
+++ b/recipes/bioconductor-fraser/1.99.3/meta.yaml
@@ -0,0 +1,120 @@
+{% set version = "1.99.3" %}
+{% set name = "FRASER" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://github.com/gagneurlab/FRASER/archive/refs/tags/{{ version }}.tar.gz'
+  md5: b16bc4611726e488a5a0eebe54a4a1f9
+build:
+  skip: True  # [osx]
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fraser", max_pin="x.x") }}'
+# Suggests: BiocStyle, knitr, rmarkdown, testthat, covr, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db,
+requirements:
+  host:
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-outrider >=1.20.0,<1.21.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rsubread >=2.16.0,<2.17.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-bbmisc
+    - r-cowplot
+    - r-data.table
+    - r-extradistr
+    - r-generics
+    - r-ggplot2
+    - r-ggrepel
+    - r-matrixstats
+    - r-pheatmap
+    - r-plotly
+    - r-prroc
+    - r-r.utils
+    - r-rcolorbrewer
+    - r-rcpp
+    - r-rcpparmadillo
+    - r-tibble
+    - r-vgam
+    - libblas
+    - liblapack
+  run:
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-outrider >=1.20.0,<1.21.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rsubread >=2.16.0,<2.17.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-bbmisc
+    - r-cowplot
+    - r-data.table
+    - r-extradistr
+    - r-generics
+    - r-ggplot2
+    - r-ggrepel
+    - r-matrixstats
+    - r-pheatmap
+    - r-plotly
+    - r-prroc
+    - r-r.utils
+    - r-rcolorbrewer
+    - r-rcpp
+    - r-rcpparmadillo
+    - r-tibble
+    - r-vgam
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - make
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'MIT + file LICENSE'
+  summary: 'Find RAre Splicing Events in RNA-Seq Data'
+  description: 'Detection of rare aberrant splicing events in transcriptome profiles. Read count ratio expectations are modeled by an autoencoder to control for confounding factors in the data. Given these expectations, the ratios are assumed to follow a beta-binomial distribution with a junction specific dispersion. Outlier events are then identified as read-count ratios that deviate significantly from this distribution. FRASER is able to detect alternative splicing, but also intron retention. The package aims to support diagnostics in the field of rare diseases where RNA-seq is performed to identify aberrant splicing defects.'
+  license_file: LICENSE
+extra:
+  identifiers:
+    - https://doi.org/10.1038/s41467-020-20573-7
+  recipe-maintainers:
+    - c-mertes
diff --git a/recipes/bioconductor-fraser/meta.yaml b/recipes/bioconductor-fraser/meta.yaml
index f5696e6fec261..d6293dfb094db 100644
--- a/recipes/bioconductor-fraser/meta.yaml
+++ b/recipes/bioconductor-fraser/meta.yaml
@@ -1,47 +1,45 @@
-{% set version = "1.12.1" %}
+{% set version = "1.99.4" %}
 {% set name = "FRASER" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
   version: '{{ version }}'
 source:
   url:
-    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
-    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
-    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
-    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f569aff29dbec9bc4d7797b30d05e593
+    - 'https://github.com/gagneurlab/FRASER/archive/refs/tags/{{ version }}.tar.gz'
+  md5: 37b2d4b80b66f19d71eaf481e77b0eec
 build:
   skip: True  # [osx]
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fraser", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, covr, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db,
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-outrider >=1.18.0,<1.19.0'
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rsubread >=2.14.0,<2.15.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-outrider >=1.20.0,<1.21.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rsubread >=2.16.0,<2.17.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bbmisc
     - r-cowplot
@@ -63,27 +61,27 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-outrider >=1.18.0,<1.19.0'
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rsubread >=2.14.0,<2.15.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-outrider >=1.20.0,<1.21.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rsubread >=2.16.0,<2.17.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bbmisc
     - r-cowplot
@@ -120,4 +118,3 @@ extra:
     - https://doi.org/10.1038/s41467-020-20573-7
   recipe-maintainers:
     - c-mertes
-
diff --git a/recipes/bioconductor-frenchfish/meta.yaml b/recipes/bioconductor-frenchfish/meta.yaml
index 9a694f3d1d414..3b703c9f03fda 100644
--- a/recipes/bioconductor-frenchfish/meta.yaml
+++ b/recipes/bioconductor-frenchfish/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "frenchFISH" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1a5cd6ee3dcf999336cd1dfc10c583ec
+  md5: 170f9e757e12e766a8a455d6d3ca9f81
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-frenchfish", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat
 requirements:
diff --git a/recipes/bioconductor-frgepistasis/meta.yaml b/recipes/bioconductor-frgepistasis/meta.yaml
index 6bd5277ce9f25..18dcf4c202ea4 100644
--- a/recipes/bioconductor-frgepistasis/meta.yaml
+++ b/recipes/bioconductor-frgepistasis/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "FRGEpistasis" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0726b7195c31f91dbf12b46ea0514d0d
+  md5: a5804d62a4e375df7706ebc0573929f5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-frgepistasis", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-frma/meta.yaml b/recipes/bioconductor-frma/meta.yaml
index f28bc4bae5195..6e27095a3ca5a 100644
--- a/recipes/bioconductor-frma/meta.yaml
+++ b/recipes/bioconductor-frma/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.52.0" %}
+{% set version = "1.54.0" %}
 {% set name = "frma" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,32 +11,33 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f74abf15385619ab89738bc0aeee913c
+  md5: 4892707c54a5698c48151bd630feb0e0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-frma", max_pin="x.x") }}'
   noarch: generic
 # Suggests: hgu133afrmavecs, frmaExampleData
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - r-mass
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - r-mass
diff --git a/recipes/bioconductor-frmaexampledata/meta.yaml b/recipes/bioconductor-frmaexampledata/meta.yaml
index c28effa9ce690..9f29cd6e5963e 100644
--- a/recipes/bioconductor-frmaexampledata/meta.yaml
+++ b/recipes/bioconductor-frmaexampledata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "frmaExampleData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 057a53ead8fde2bab4ee0cb71a4faaf6
+  md5: 9713801ffd08145323ca4d31a3631995
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-frmaexampledata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-frmaexampledata/post-link.sh b/recipes/bioconductor-frmaexampledata/post-link.sh
index ab1764237f9ab..11252f324dcf4 100644
--- a/recipes/bioconductor-frmaexampledata/post-link.sh
+++ b/recipes/bioconductor-frmaexampledata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "frmaexampledata-1.36.0"
+installBiocDataPackage.sh "frmaexampledata-1.38.0"
diff --git a/recipes/bioconductor-frmatools/meta.yaml b/recipes/bioconductor-frmatools/meta.yaml
index 6cdde49420424..113507f7441f4 100644
--- a/recipes/bioconductor-frmatools/meta.yaml
+++ b/recipes/bioconductor-frmatools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.52.0" %}
+{% set version = "1.54.0" %}
 {% set name = "frmaTools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4fc17910da8e1a1f2b006edd1c122156
+  md5: 270e71dc903bb77add1154782cf17342
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-frmatools", max_pin="x.x") }}'
   noarch: generic
 # Suggests: oligo, pd.huex.1.0.st.v2, pd.hugene.1.0.st.v1, frma, affyPLM, hgu133aprobe, hgu133atagprobe, hgu133plus2probe, hgu133acdf, hgu133atagcdf, hgu133plus2cdf, hgu133afrmavecs, frmaExampleData
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
 test:
diff --git a/recipes/bioconductor-funchip/meta.yaml b/recipes/bioconductor-funchip/meta.yaml
index 80163f7e1dedd..d78b00121ddb0 100644
--- a/recipes/bioconductor-funchip/meta.yaml
+++ b/recipes/bioconductor-funchip/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "FunChIP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4d4be7e4b7194e6c6baf5aa80d938b4a
+  md5: 93a91487d2e6b0841094c9eb7c997be2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-funchip", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-doparallel
     - r-fda
@@ -33,10 +34,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-doparallel
     - r-fda
diff --git a/recipes/bioconductor-funtoonorm/meta.yaml b/recipes/bioconductor-funtoonorm/meta.yaml
index db61dccd9c11f..ecdc54d66593c 100644
--- a/recipes/bioconductor-funtoonorm/meta.yaml
+++ b/recipes/bioconductor-funtoonorm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "funtooNorm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 50104886edef68e9248446c34efcb714
+  md5: 32208fd7734fe0fcfb1278b80a98c28e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-funtoonorm", max_pin="x.x") }}'
   noarch: generic
 # Suggests: prettydoc, minfiData, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
     - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
     - r-matrixstats
     - r-pls
   run:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
     - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
     - r-matrixstats
     - r-pls
diff --git a/recipes/bioconductor-furrowseg/meta.yaml b/recipes/bioconductor-furrowseg/meta.yaml
index f5835bbc9cb5e..19e3d0d33ddfd 100644
--- a/recipes/bioconductor-furrowseg/meta.yaml
+++ b/recipes/bioconductor-furrowseg/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "furrowSeg" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6ee1d6bc3d7fe7c1855a6b96b429190b
+  md5: f41e88a4d47949b3b8b126b0fc7852eb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-furrowseg", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, ggplot2, knitr
 requirements:
   host:
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
     - r-abind
     - r-base
     - r-dplyr
     - r-locfit
     - r-tiff
   run:
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
     - r-abind
     - r-base
     - r-dplyr
     - r-locfit
     - r-tiff
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-furrowseg/post-link.sh b/recipes/bioconductor-furrowseg/post-link.sh
index f6edea536462d..1cf285a2cc4fd 100644
--- a/recipes/bioconductor-furrowseg/post-link.sh
+++ b/recipes/bioconductor-furrowseg/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "furrowseg-1.28.0"
+installBiocDataPackage.sh "furrowseg-1.30.0"
diff --git a/recipes/bioconductor-fusesom/meta.yaml b/recipes/bioconductor-fusesom/meta.yaml
index 9000fbe7a3415..972591b6661df 100644
--- a/recipes/bioconductor-fusesom/meta.yaml
+++ b/recipes/bioconductor-fusesom/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "FuseSOM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3c90411cb119ef9c54cf54f49b909d5a
+  md5: 8f53b251d77ea648cb8e56bb5eb72b18
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-fusesom", max_pin="x.x") }}'
 # Suggests: knitr, BiocStyle, rmarkdown, SingleCellExperiment
 requirements:
   host:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-analogue
     - r-base
     - r-cluster
@@ -41,8 +42,8 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-analogue
     - r-base
     - r-cluster
diff --git a/recipes/bioconductor-ga4ghclient/meta.yaml b/recipes/bioconductor-ga4ghclient/meta.yaml
index 8591a0b9dc674..aef75f3842b74 100644
--- a/recipes/bioconductor-ga4ghclient/meta.yaml
+++ b/recipes/bioconductor-ga4ghclient/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "GA4GHclient" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: da57780acaf8f06eb3efdd6aeff4446c
+  md5: d0e8b9a21eda6320d15642c12fcb8392
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ga4ghclient", max_pin="x.x") }}'
   noarch: generic
 # Suggests: AnnotationDbi, BiocStyle, DT, knitr, org.Hs.eg.db, rmarkdown, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-dplyr
     - r-httr
     - r-jsonlite
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-dplyr
     - r-httr
diff --git a/recipes/bioconductor-ga4ghshiny/meta.yaml b/recipes/bioconductor-ga4ghshiny/meta.yaml
index cc143cb834480..ae26ca82d7726 100644
--- a/recipes/bioconductor-ga4ghshiny/meta.yaml
+++ b/recipes/bioconductor-ga4ghshiny/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "GA4GHshiny" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2e537faaa9cbb451eaf972f495c6de06
+  md5: 629ca5d338b8435b238169892016d447
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ga4ghshiny", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, org.Hs.eg.db, knitr, rmarkdown, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-ga4ghclient >=1.24.0,<1.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-ga4ghclient >=1.26.0,<1.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-dt
@@ -37,12 +38,12 @@ requirements:
     - r-shinythemes
     - r-tidyr
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-ga4ghclient >=1.24.0,<1.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-ga4ghclient >=1.26.0,<1.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-dt
diff --git a/recipes/bioconductor-gaga/meta.yaml b/recipes/bioconductor-gaga/meta.yaml
index 2c252a1df70a7..929fa49e04c27 100644
--- a/recipes/bioconductor-gaga/meta.yaml
+++ b/recipes/bioconductor-gaga/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.46.0" %}
+{% set version = "2.48.0" %}
 {% set name = "gaga" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 9a616f28ab9876f7725629d62946aadd
+  md5: d1b404912b9a23365c9085dc91e20a10
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gaga", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-ebarrays >=2.64.0,<2.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-ebarrays >=2.66.0,<2.67.0'
     - r-base
     - r-coda
     - r-mgcv
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-ebarrays >=2.64.0,<2.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-ebarrays >=2.66.0,<2.67.0'
     - r-base
     - r-coda
     - r-mgcv
@@ -40,11 +41,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'GPL (>= 2)'
+  license: 'GPL-3.0-or-later'
   summary: 'GaGa hierarchical model for high-throughput data analysis'
   description: 'Implements the GaGa model for high-throughput data analysis, including differential expression analysis, supervised gene clustering and classification. Additionally, it performs sequential sample size calculations using the GaGa and LNNGV models (the latter from EBarrays package).'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:gaga
     - doi:10.1214/09-aoas244
diff --git a/recipes/bioconductor-gage/meta.yaml b/recipes/bioconductor-gage/meta.yaml
index 792d38f878e67..4724a254b4280 100644
--- a/recipes/bioconductor-gage/meta.yaml
+++ b/recipes/bioconductor-gage/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.50.0" %}
+{% set version = "2.52.0" %}
 {% set name = "gage" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 7981df2c7c9c8bb91d12f0b207f3b380
+  md5: ffb5ec419d5e08f9b31154202e0e04c8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gage", max_pin="x.x") }}'
   noarch: generic
 # Suggests: pathview, gageData, org.Hs.eg.db, hgu133a.db, GSEABase, Rsamtools, GenomicAlignments, TxDb.Hsapiens.UCSC.hg19.knownGene, DESeq2, edgeR, limma
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-gagedata/meta.yaml b/recipes/bioconductor-gagedata/meta.yaml
index b5c3d7c318906..eeef14a1c426c 100644
--- a/recipes/bioconductor-gagedata/meta.yaml
+++ b/recipes/bioconductor-gagedata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.38.0" %}
+{% set version = "2.40.0" %}
 {% set name = "gageData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 04f7869c72f70f6726372af0a4688d5d
+  md5: 889e4b6ceda6c2a80f61ad4e867c3b59
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gagedata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: gage, pathview, genefilter
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-gagedata/post-link.sh b/recipes/bioconductor-gagedata/post-link.sh
index ae7f71a1154ae..1e6ddee3415bd 100644
--- a/recipes/bioconductor-gagedata/post-link.sh
+++ b/recipes/bioconductor-gagedata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "gagedata-2.38.0"
+installBiocDataPackage.sh "gagedata-2.40.0"
diff --git a/recipes/bioconductor-gaggle/meta.yaml b/recipes/bioconductor-gaggle/meta.yaml
index b5cfe52719523..10757fa0844f0 100644
--- a/recipes/bioconductor-gaggle/meta.yaml
+++ b/recipes/bioconductor-gaggle/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.68.0" %}
+{% set version = "1.70.0" %}
 {% set name = "gaggle" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c86f7ecb5db49b11939c8d9f6077c976
+  md5: 3dc385e959f454cd56dec418800c33a6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gaggle", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - 'r-rjava >=0.4'
     - 'r-runit >=0.4.17'
   run:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - 'r-rjava >=0.4'
     - 'r-runit >=0.4.17'
diff --git a/recipes/bioconductor-gaprediction/meta.yaml b/recipes/bioconductor-gaprediction/meta.yaml
index 71297ee496db1..04d4db4123a5b 100644
--- a/recipes/bioconductor-gaprediction/meta.yaml
+++ b/recipes/bioconductor-gaprediction/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "GAprediction" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 28fd8f9a1b37806405ac3a5aed4d64fe
+  md5: 5aceb1005e134eeeb2fc6a77941d8348
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gaprediction", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
diff --git a/recipes/bioconductor-garfield/meta.yaml b/recipes/bioconductor-garfield/meta.yaml
index bf5fef693a02b..14344e5f71ca5 100644
--- a/recipes/bioconductor-garfield/meta.yaml
+++ b/recipes/bioconductor-garfield/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "garfield" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 269dabdfcc22cb722db4cdf8fb78ad6c
+  md5: bf1974925a6c10b95ada01ff6d46bf15
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-garfield", max_pin="x.x") }}'
 # Suggests: knitr
 requirements:
   host:
@@ -39,3 +40,6 @@ about:
   description: 'GARFIELD is a non-parametric functional enrichment analysis approach described in the paper GARFIELD: GWAS analysis of regulatory or functional information enrichment with LD correction. Briefly, it is a method that leverages GWAS findings with regulatory or functional annotations (primarily from ENCODE and Roadmap epigenomics data) to find features relevant to a phenotype of interest. It performs greedy pruning of GWAS SNPs (LD r2 > 0.1) and then annotates them based on functional information overlap. Next, it quantifies Fold Enrichment (FE) at various GWAS significance cutoffs and assesses them by permutation testing, while matching for minor allele frequency, distance to nearest transcription start site and number of LD proxies (r2 > 0.8).'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/bioconductor-gars/meta.yaml b/recipes/bioconductor-gars/meta.yaml
index 6fab0879d810b..aadcd040d41db 100644
--- a/recipes/bioconductor-gars/meta.yaml
+++ b/recipes/bioconductor-gars/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "GARS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 67cee7307c638973430218e416e4ae01
+  md5: 205eceff8f152fa6ac308b7830ef2876
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gars", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, testthat
 requirements:
   host:
-    - 'bioconductor-damirseq >=2.12.0,<2.13.0'
-    - 'bioconductor-mlseq >=2.18.0,<2.19.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-damirseq >=2.14.0,<2.15.0'
+    - 'bioconductor-mlseq >=2.20.0,<2.21.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cluster
     - r-ggplot2
   run:
-    - 'bioconductor-damirseq >=2.12.0,<2.13.0'
-    - 'bioconductor-mlseq >=2.18.0,<2.19.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-damirseq >=2.14.0,<2.15.0'
+    - 'bioconductor-mlseq >=2.20.0,<2.21.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cluster
     - r-ggplot2
@@ -43,7 +44,7 @@ about:
   summary: 'GARS: Genetic Algorithm for the identification of Robust Subsets of variables in high-dimensional and challenging datasets'
   description: 'Feature selection aims to identify and remove redundant, irrelevant and noisy variables from high-dimensional datasets. Selecting informative features affects the subsequent classification and regression analyses by improving their overall performances. Several methods have been proposed to perform feature selection: most of them relies on univariate statistics, correlation, entropy measurements or the usage of backward/forward regressions. Herein, we propose an efficient, robust and fast method that adopts stochastic optimization approaches for high-dimensional. GARS is an innovative implementation of a genetic algorithm that selects robust features in high-dimensional and challenging datasets.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
-
 extra:
   container:
-    extended-base: True
+    extended-base: true
+
diff --git a/recipes/bioconductor-gaschyhs/meta.yaml b/recipes/bioconductor-gaschyhs/meta.yaml
index 924b406a8798c..0bbd7d13201a1 100644
--- a/recipes/bioconductor-gaschyhs/meta.yaml
+++ b/recipes/bioconductor-gaschyhs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "gaschYHS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: adb36d86b4890c4f4c714d99aa3b3f93
+  md5: 29983eadb2a2a20f7c5475206367d641
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gaschyhs", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-gaschyhs/post-link.sh b/recipes/bioconductor-gaschyhs/post-link.sh
index a0d77e2feb121..51ff00a4819a6 100644
--- a/recipes/bioconductor-gaschyhs/post-link.sh
+++ b/recipes/bioconductor-gaschyhs/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "gaschyhs-1.38.0"
+installBiocDataPackage.sh "gaschyhs-1.40.0"
diff --git a/recipes/bioconductor-gatefinder/meta.yaml b/recipes/bioconductor-gatefinder/meta.yaml
index fead106644f34..ac9a8afe6eacc 100644
--- a/recipes/bioconductor-gatefinder/meta.yaml
+++ b/recipes/bioconductor-gatefinder/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "GateFinder" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b893327eec1564d4da0596cc6822b44b
+  md5: 4fcb13ba6ee293d3ffb30122b652df12
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gatefinder", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowfp >=1.58.0,<1.59.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowfp >=1.60.0,<1.61.0'
     - r-base
     - r-diptest
     - r-mvoutlier
     - r-splancs
   run:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowfp >=1.58.0,<1.59.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowfp >=1.60.0,<1.61.0'
     - r-base
     - r-diptest
     - r-mvoutlier
diff --git a/recipes/bioconductor-gatom/build.sh b/recipes/bioconductor-gatom/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-gatom/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-cancer/build_failure.linux-64.yaml b/recipes/bioconductor-gatom/build_failure.linux-64.yaml
similarity index 81%
rename from recipes/bioconductor-cancer/build_failure.linux-64.yaml
rename to recipes/bioconductor-gatom/build_failure.linux-64.yaml
index e0fc6e1bb323f..253ed0b0d61b5 100644
--- a/recipes/bioconductor-cancer/build_failure.linux-64.yaml
+++ b/recipes/bioconductor-gatom/build_failure.linux-64.yaml
@@ -1,26 +1,25 @@
-recipe_sha: c8371d76491173a2c71d6f48bd4a6acaa34dccfc9e093843f1f28fd72dac3536  # The commit at which this recipe failed to build.
+recipe_sha: 7ebb01aa7b6769d098059934bddb98ded4a89c60a59b8400436d8a3a28fb92c1  # The commit at which this recipe failed to build.
 skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+category: |-
+  dependency issue
 log: |2-
-   - bioconductor-gseabase >=1.62.0,<1.63.0
-   - r-circlize
-   - r-httr
-   - r-r.oo
-   - r-survival
-   - bioconductor-phenotest >=1.48.0,<1.49.0
+   - r-mwcsr
+   - r-pryr
+   - r-data.table
+   - r-plyr
+   - r-shinycyjs >=1.0.0
    - r-base 4.3.*
-   - r-r.methodss3
-   - r-rpart
-   - r-runit
-   - bioconductor-genetclassifier >=1.40.0,<1.41.0
 
   with channels:
+   - file:///opt/host-conda-bld
    - conda-forge
    - bioconda
    - defaults
 
   The reported errors are:
   - Encountered problems while solving:
-  -   - nothing provides icu 54.* needed by r-base-3.3.2-0
+  -   - nothing provides requested r-mwcsr
+  -   - nothing provides requested r-shinycyjs >=1.0.0
   -
 
   Leaving build/test directories:
@@ -43,30 +42,33 @@ log: |2-
     File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 234, in solve
       raise RuntimeError("Solver could not find solution."  error_string)
   RuntimeError: Solver could not find solution.Mamba failed to solve:
+   - r-ggally
+   - r-xml
+   - r-sna
+   - r-htmltools
+   - r-htmlwidgets
+   - r-intergraph
+   - r-ggplot2
+   - bioconductor-bionet >=1.62.0,<1.63.0
+   - r-network
+   - r-igraph
+   - r-mwcsr
+   - r-pryr
+   - r-data.table
    - r-plyr
-   - r-formula
-   - r-tkrplot
-   - bioconductor-biobase >=2.60.0,<2.61.0
-   - bioconductor-gseabase >=1.62.0,<1.63.0
-   - r-circlize
-   - r-httr
-   - r-r.oo
-   - r-survival
-   - bioconductor-phenotest >=1.48.0,<1.49.0
+   - r-shinycyjs >=1.0.0
    - r-base 4.3.*
-   - r-r.methodss3
-   - r-rpart
-   - r-runit
-   - bioconductor-genetclassifier >=1.40.0,<1.41.0
 
   with channels:
+   - file:///opt/host-conda-bld
    - conda-forge
    - bioconda
    - defaults
 
   The reported errors are:
   - Encountered problems while solving:
-  -   - nothing provides icu 54.* needed by r-base-3.3.2-0
+  -   - nothing provides requested r-mwcsr
+  -   - nothing provides requested r-shinycyjs >=1.0.0
   -
 
   During handling of the above exception, another exception occurred:
@@ -100,5 +102,5 @@ log: |2-
       actions = environ.get_install_actions(tmpdir, tuple(dependencies), env,
     File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 150, in mamba_get_install_actions
       raise err
-  conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("icu=54"), MatchSpec("r-base==3.3.2=0")}
+  conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("r-mwcsr"), MatchSpec("r-shinycyjs[version='>=1.0.0']")}
 # Last 100 lines of the build log.
diff --git a/recipes/bioconductor-gatom/meta.yaml b/recipes/bioconductor-gatom/meta.yaml
new file mode 100644
index 0000000000000..e51c528dd385d
--- /dev/null
+++ b/recipes/bioconductor-gatom/meta.yaml
@@ -0,0 +1,66 @@
+{% set version = "1.0.0" %}
+{% set name = "gatom" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
+  md5: 0e86773c5bafed3a4c13b7db82015463
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gatom", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: testthat, knitr, rmarkdown, KEGGREST, AnnotationDbi, org.Mm.eg.db, reactome.db, fgsea, readr, BiocStyle, R.utils
+requirements:
+  host:
+    - 'bioconductor-bionet >=1.62.0,<1.63.0'
+    - r-base
+    - r-data.table
+    - r-ggally
+    - r-ggplot2
+    - r-htmltools
+    - r-htmlwidgets
+    - r-igraph
+    - r-intergraph
+    - r-mwcsr
+    - r-network
+    - r-plyr
+    - r-pryr
+    - 'r-shinycyjs >=1.0.0'
+    - r-sna
+    - r-xml
+  run:
+    - 'bioconductor-bionet >=1.62.0,<1.63.0'
+    - r-base
+    - r-data.table
+    - r-ggally
+    - r-ggplot2
+    - r-htmltools
+    - r-htmlwidgets
+    - r-igraph
+    - r-intergraph
+    - r-mwcsr
+    - r-network
+    - r-plyr
+    - r-pryr
+    - 'r-shinycyjs >=1.0.0'
+    - r-sna
+    - r-xml
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'MIT + file LICENCE'
+  summary: 'Finding an Active Metabolic Module in Atom Transition Network'
+  description: 'This package implements a metabolic network analysis pipeline to identify an active metabolic module based on high throughput data. The pipeline takes as input transcriptional and/or metabolic data and finds a metabolic subnetwork (module) most regulated between the two conditions of interest. The package further provides functions for module post-processing, annotation and visualization.'
+
diff --git a/recipes/bioconductor-gbscleanr/meta.yaml b/recipes/bioconductor-gbscleanr/meta.yaml
index 9f9a3b75a8f5e..7b565ff74bd52 100644
--- a/recipes/bioconductor-gbscleanr/meta.yaml
+++ b/recipes/bioconductor-gbscleanr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.4" %}
+{% set version = "1.6.0" %}
 {% set name = "GBScleanR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b1a99a09d42d9cf271d30f570835d9d8
+  md5: f54a8356b8931c5c6dd6150a021c56cf
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gbscleanr", max_pin="x.x") }}'
 # Suggests: BiocStyle, testthat (>= 3.0.0), knitr, rmarkdown
 # SystemRequirements: GNU make, C++11
 requirements:
   host:
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-seqarray >=1.40.0,<1.41.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-seqarray >=1.42.0,<1.43.0'
     - r-base
     - r-expm
     - r-ggplot2
@@ -32,8 +33,8 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-seqarray >=1.40.0,<1.41.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-seqarray >=1.42.0,<1.43.0'
     - r-base
     - r-expm
     - r-ggplot2
diff --git a/recipes/bioconductor-gcapc/meta.yaml b/recipes/bioconductor-gcapc/meta.yaml
index 3c3a16a0c8b79..9270c58bf5303 100644
--- a/recipes/bioconductor-gcapc/meta.yaml
+++ b/recipes/bioconductor-gcapc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "gcapc" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,38 +11,39 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 9974c87d810bf0e80de4672cdee15c6e
+  md5: 16c0a9ac78843641871680c0e0d48dfc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gcapc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm10
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-mass
     - r-matrixstats
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-mass
     - r-matrixstats
diff --git a/recipes/bioconductor-gcatest/meta.yaml b/recipes/bioconductor-gcatest/meta.yaml
index 9cfd490a3165d..82f540b32e039 100644
--- a/recipes/bioconductor-gcatest/meta.yaml
+++ b/recipes/bioconductor-gcatest/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.0.7" %}
+{% set version = "2.2.0" %}
 {% set name = "gcatest" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: e0cfb7c0ad56c72aaf703b153456d091
+  md5: ddfda402a2332e9c16ecfaa035b689a9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gcatest", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, ggplot2, testthat, BEDMatrix, genio
 requirements:
   host:
-    - 'bioconductor-lfa >=2.0.0,<2.1.0'
+    - 'bioconductor-lfa >=2.2.0,<2.3.0'
     - r-base
   run:
-    - 'bioconductor-lfa >=2.0.0,<2.1.0'
+    - 'bioconductor-lfa >=2.2.0,<2.3.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-gcrisprtools/meta.yaml b/recipes/bioconductor-gcrisprtools/meta.yaml
index d07f2c85d5031..421388b058ba2 100644
--- a/recipes/bioconductor-gcrisprtools/meta.yaml
+++ b/recipes/bioconductor-gcrisprtools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.6.0" %}
+{% set version = "2.8.0" %}
 {% set name = "gCrisprTools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7a1ff3be1f85750ef41124d7768602df
+  md5: 113ef693d51de0459865934e9a16d90a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gcrisprtools", max_pin="x.x") }}'
   noarch: generic
 # Suggests: edgeR, knitr, AnnotationDbi, org.Mm.eg.db, org.Hs.eg.db, BiocGenerics, markdown, RUnit, sparrow, msigdbr, fgsea
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-rmarkdown
     - r-robustrankaggreg
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-rmarkdown
diff --git a/recipes/bioconductor-gcrma/meta.yaml b/recipes/bioconductor-gcrma/meta.yaml
index ba148e347ab47..c742e33709f8f 100644
--- a/recipes/bioconductor-gcrma/meta.yaml
+++ b/recipes/bioconductor-gcrma/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.72.0" %}
+{% set version = "2.74.0" %}
 {% set name = "gcrma" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 78807a1c603b84cf1f0a1eed3ea140a4
+  md5: d28b6c225b2677e476da8d0348af4695
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gcrma", max_pin="x.x") }}'
 # Suggests: affydata, tools, splines, hgu95av2cdf, hgu95av2probe
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-affyio >=1.70.0,<1.71.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-affyio >=1.72.0,<1.73.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-biocmanager
     - libblas
     - liblapack
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-affyio >=1.70.0,<1.71.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-affyio >=1.72.0,<1.73.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-biocmanager
   build:
diff --git a/recipes/bioconductor-gcspikelite/meta.yaml b/recipes/bioconductor-gcspikelite/meta.yaml
index bcda48ebb7fc7..c6c53cd0af3c6 100644
--- a/recipes/bioconductor-gcspikelite/meta.yaml
+++ b/recipes/bioconductor-gcspikelite/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "gcspikelite" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 721566ac21590bc7f1e56dd1c716d30c
+  md5: 91b995753732f0d5508fdc2d7dcb998f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gcspikelite", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-gcspikelite/post-link.sh b/recipes/bioconductor-gcspikelite/post-link.sh
index e77ece496b3d2..56da58607707c 100644
--- a/recipes/bioconductor-gcspikelite/post-link.sh
+++ b/recipes/bioconductor-gcspikelite/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "gcspikelite-1.38.0"
+installBiocDataPackage.sh "gcspikelite-1.40.0"
diff --git a/recipes/bioconductor-gdcrnatools/meta.yaml b/recipes/bioconductor-gdcrnatools/meta.yaml
index 75681a20e8676..4ce47ee1d8f08 100644
--- a/recipes/bioconductor-gdcrnatools/meta.yaml
+++ b/recipes/bioconductor-gdcrnatools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "GDCRNATools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a375e07fa500196928c1c10daf6585ac
+  md5: bf97cefce864ca1443cb0b0d53601799
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gdcrnatools", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr, testthat, rmarkdown
+# Suggests: knitr, testthat, prettydoc, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicdatacommons >=1.24.0,<1.25.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-pathview >=1.40.0,<1.41.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicdatacommons >=1.26.0,<1.27.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-pathview >=1.42.0,<1.43.0'
     - r-base
     - r-dt
     - r-ggplot2
@@ -42,16 +43,16 @@ requirements:
     - r-survminer
     - r-xml
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicdatacommons >=1.24.0,<1.25.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-pathview >=1.40.0,<1.41.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicdatacommons >=1.26.0,<1.27.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-pathview >=1.42.0,<1.43.0'
     - r-base
     - r-dt
     - r-ggplot2
diff --git a/recipes/bioconductor-gdnainrnaseqdata/meta.yaml b/recipes/bioconductor-gdnainrnaseqdata/meta.yaml
index 9f347cd9c4adc..bb3142cbcf0d4 100644
--- a/recipes/bioconductor-gdnainrnaseqdata/meta.yaml
+++ b/recipes/bioconductor-gdnainrnaseqdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "gDNAinRNAseqData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: de757712c6890eb225ad26790e2a23f6
+  md5: 52e275ca255493684657a091667f987f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gdnainrnaseqdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-rcurl
     - r-xml
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-rcurl
     - r-xml
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-gdnainrnaseqdata/post-link.sh b/recipes/bioconductor-gdnainrnaseqdata/post-link.sh
index 828d3fe116d3a..4daf109d60fca 100644
--- a/recipes/bioconductor-gdnainrnaseqdata/post-link.sh
+++ b/recipes/bioconductor-gdnainrnaseqdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "gdnainrnaseqdata-1.0.0"
+installBiocDataPackage.sh "gdnainrnaseqdata-1.2.0"
diff --git a/recipes/bioconductor-gdnax/build.sh b/recipes/bioconductor-gdnax/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-gdnax/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-gdnax/meta.yaml b/recipes/bioconductor-gdnax/meta.yaml
new file mode 100644
index 0000000000000..d582e28ee690b
--- /dev/null
+++ b/recipes/bioconductor-gdnax/meta.yaml
@@ -0,0 +1,70 @@
+{% set version = "1.0.0" %}
+{% set name = "gDNAx" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: ca3a7370388bf64ba5ccae7161c64ebd
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gdnax", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, knitr, rmarkdown, RUnit, TxDb.Hsapiens.UCSC.hg38.knownGene, gDNAinRNAseqData
+requirements:
+  host:
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicfiles >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-bitops
+    - r-plotrix
+    - r-rcolorbrewer
+  run:
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicfiles >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-bitops
+    - r-plotrix
+    - r-rcolorbrewer
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'Diagnostics for assessing genomic DNA contamination in RNA-seq data'
+  description: 'Provides diagnostics for assessing genomic DNA contamination in RNA-seq data, as well as plots representing these diagnostics. Moreover, the package can be used to get an insight into the strand library protocol used and, in case of strand-specific libraries, the strandedness of the data. Furthermore, it provides functionality to filter out reads of potential gDNA origin.'
+
diff --git a/recipes/bioconductor-gdr/build.sh b/recipes/bioconductor-gdr/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-gdr/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-gdr/meta.yaml b/recipes/bioconductor-gdr/meta.yaml
new file mode 100644
index 0000000000000..8b311b353ff7d
--- /dev/null
+++ b/recipes/bioconductor-gdr/meta.yaml
@@ -0,0 +1,42 @@
+{% set version = "1.0.0" %}
+{% set name = "gDR" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: abefb906e5c9ec014a443b0367844ac9
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gdr", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, BumpyMatrix, futile.logger, gDRstyle (>= 0.99.11), gDRtestData (>= 0.99.11), kableExtra, knitr, markdown, purrr, rmarkdown, SummarizedExperiment, testthat, yaml
+requirements:
+  host:
+    - 'bioconductor-gdrcore >=1.0.0,<1.1.0'
+    - 'bioconductor-gdrimport >=1.0.0,<1.1.0'
+    - 'bioconductor-gdrutils >=1.0.0,<1.1.0'
+    - r-base
+  run:
+    - 'bioconductor-gdrcore >=1.0.0,<1.1.0'
+    - 'bioconductor-gdrimport >=1.0.0,<1.1.0'
+    - 'bioconductor-gdrutils >=1.0.0,<1.1.0'
+    - r-base
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'Umbrella package for R packages in the gDR suite'
+  description: 'Package is a part of the gDR suite. It reexports functions from other packages in the gDR suite that contain critical processing functions and utilities. The vignette walks through the full processing pipeline for drug response analyses that the gDR suite offers.'
+
diff --git a/recipes/bioconductor-gdrcore/build.sh b/recipes/bioconductor-gdrcore/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-gdrcore/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-gdrcore/meta.yaml b/recipes/bioconductor-gdrcore/meta.yaml
new file mode 100644
index 0000000000000..91fd6a2760db8
--- /dev/null
+++ b/recipes/bioconductor-gdrcore/meta.yaml
@@ -0,0 +1,63 @@
+{% set version = "1.0.0" %}
+{% set name = "gDRcore" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 76f729e9fce669107120d0ec73c32bfc
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gdrcore", max_pin="x.x") }}'
+# Suggests: BiocStyle, gDRstyle (>= 0.99.15), gDRimport (>= 0.99.10), gDRtestData (>= 0.99.20), IRanges, knitr, pkgbuild, qs, testthat, yaml
+requirements:
+  host:
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-bumpymatrix >=1.10.0,<1.11.0'
+    - 'bioconductor-gdrutils >=1.0.0,<1.1.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-checkmate
+    - r-data.table
+    - r-futile.logger
+    - r-purrr
+    - r-stringr
+    - libblas
+    - liblapack
+  run:
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-bumpymatrix >=1.10.0,<1.11.0'
+    - 'bioconductor-gdrutils >=1.0.0,<1.1.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-checkmate
+    - r-data.table
+    - r-futile.logger
+    - r-purrr
+    - r-stringr
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - make
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'Processing functions and interface to process and analyze drug dose-response data'
+  description: 'This package contains core functions to process and analyze drug response data. The package provides tools for normalizing, averaging, and calculation of gDR metrics data. All core functions are wrapped into the pipeline function allowing analyzing the data in a straightforward way.'
+
diff --git a/recipes/bioconductor-gdrimport/build.sh b/recipes/bioconductor-gdrimport/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-gdrimport/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-gdrimport/meta.yaml b/recipes/bioconductor-gdrimport/meta.yaml
new file mode 100644
index 0000000000000..2b32dd59962bc
--- /dev/null
+++ b/recipes/bioconductor-gdrimport/meta.yaml
@@ -0,0 +1,74 @@
+{% set version = "1.0.0" %}
+{% set name = "gDRimport" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 0390ee6a16f21624044bc509ebdbabd1
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gdrimport", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, gDRtestData (>= 0.99.10), gDRstyle (>= 0.99.11), knitr, purrr, qs, testthat
+requirements:
+  host:
+    - 'bioconductor-bumpymatrix >=1.10.0,<1.11.0'
+    - 'bioconductor-coregx >=2.6.0,<2.7.0'
+    - 'bioconductor-gdrutils >=1.0.0,<1.1.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-pharmacogx >=3.6.0,<3.7.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-assertthat
+    - r-base
+    - r-checkmate
+    - r-data.table
+    - r-futile.logger
+    - r-magrittr
+    - r-openxlsx
+    - r-readxl
+    - r-rio
+    - r-stringi
+    - r-tibble
+    - r-xml
+    - r-yaml
+  run:
+    - 'bioconductor-bumpymatrix >=1.10.0,<1.11.0'
+    - 'bioconductor-coregx >=2.6.0,<2.7.0'
+    - 'bioconductor-gdrutils >=1.0.0,<1.1.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-pharmacogx >=3.6.0,<3.7.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-assertthat
+    - r-base
+    - r-checkmate
+    - r-data.table
+    - r-futile.logger
+    - r-magrittr
+    - r-openxlsx
+    - r-readxl
+    - r-rio
+    - r-stringi
+    - r-tibble
+    - r-xml
+    - r-yaml
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'Package for handling the import of dose-response data'
+  description: 'The package is a part of the gDR suite. It helps to prepare raw drug response data for downstream processing. It mainly contains helper functions for importing/loading/validating dose-response data provided in different file formats.'
+
diff --git a/recipes/bioconductor-gdrstyle/build.sh b/recipes/bioconductor-gdrstyle/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-gdrstyle/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-gdrstyle/meta.yaml b/recipes/bioconductor-gdrstyle/meta.yaml
new file mode 100644
index 0000000000000..e8ec2ff8fdf2a
--- /dev/null
+++ b/recipes/bioconductor-gdrstyle/meta.yaml
@@ -0,0 +1,58 @@
+{% set version = "1.0.0" %}
+{% set name = "gDRstyle" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 473f3c2e73e05f50ec3af2b72bb18a55
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gdrstyle", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, knitr, testthat (>= 3.0.0)
+requirements:
+  host:
+    - 'bioconductor-bioccheck >=1.38.0,<1.39.0'
+    - r-base
+    - r-biocmanager
+    - r-desc
+    - r-git2r
+    - 'r-lintr >=3.0.0'
+    - r-pkgbuild
+    - r-rcmdcheck
+    - r-remotes
+    - r-rjson
+    - r-withr
+    - r-yaml
+  run:
+    - 'bioconductor-bioccheck >=1.38.0,<1.39.0'
+    - r-base
+    - r-biocmanager
+    - r-desc
+    - r-git2r
+    - 'r-lintr >=3.0.0'
+    - r-pkgbuild
+    - r-rcmdcheck
+    - r-remotes
+    - r-rjson
+    - r-withr
+    - r-yaml
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'A package with style requirements for the gDR suite'
+  description: 'Package fills a helper package role for whole gDR suite. It helps to support good development practices by keeping style requirements and style tests for other packages. It also contains build helpers to make all package requirements met.'
+
diff --git a/recipes/bioconductor-gdrtestdata/meta.yaml b/recipes/bioconductor-gdrtestdata/meta.yaml
new file mode 100644
index 0000000000000..0118da30f9290
--- /dev/null
+++ b/recipes/bioconductor-gdrtestdata/meta.yaml
@@ -0,0 +1,40 @@
+{% set version = "1.0.0" %}
+{% set name = "gDRtestData" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 8de3dea2673f0e7dc9412e36da2c4f9d
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gdrtestdata", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, data.table, gDRstyle (>= 0.99.16), knitr, qs, reshape2, rmarkdown, SummarizedExperiment, testthat
+requirements:
+  host:
+    - r-base
+    - r-checkmate
+  run:
+    - r-base
+    - r-checkmate
+    - curl
+    - 'bioconductor-data-packages >=20231203'
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'gDRtestData - R data package with testing dose reponse data'
+  description: 'R package with internal dose-response test data. Package provides functions to generate input testing data that can be used as the input for gDR pipeline. It also contains RDS files with MAE data processed by gDR.'
+
diff --git a/recipes/bioconductor-gdrtestdata/post-link.sh b/recipes/bioconductor-gdrtestdata/post-link.sh
new file mode 100644
index 0000000000000..1e1afaeb5de88
--- /dev/null
+++ b/recipes/bioconductor-gdrtestdata/post-link.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+installBiocDataPackage.sh "gdrtestdata-1.0.0"
diff --git a/recipes/bioconductor-gdrtestdata/pre-unlink.sh b/recipes/bioconductor-gdrtestdata/pre-unlink.sh
new file mode 100644
index 0000000000000..d04affb324053
--- /dev/null
+++ b/recipes/bioconductor-gdrtestdata/pre-unlink.sh
@@ -0,0 +1 @@
+R CMD REMOVE --library=$PREFIX/lib/R/library/ gDRtestData
diff --git a/recipes/bioconductor-gdrutils/build.sh b/recipes/bioconductor-gdrutils/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-gdrutils/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-gdrutils/meta.yaml b/recipes/bioconductor-gdrutils/meta.yaml
new file mode 100644
index 0000000000000..ea940ee0ab23d
--- /dev/null
+++ b/recipes/bioconductor-gdrutils/meta.yaml
@@ -0,0 +1,60 @@
+{% set version = "1.0.0" %}
+{% set name = "gDRutils" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: fdf71802bbd5967b163447eda2fe37ef
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gdrutils", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocManager, BiocStyle, futile.logger, gDRstyle (>= 0.99.15), gDRtestData (>= 0.99.12), IRanges, knitr, lintr, purrr, qs, rcmdcheck, rmarkdown, testthat, tools, yaml
+requirements:
+  host:
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-bumpymatrix >=1.10.0,<1.11.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-checkmate
+    - r-data.table
+    - r-drc
+    - r-jsonlite
+    - r-jsonvalidate
+    - r-magrittr
+    - r-stringr
+  run:
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-bumpymatrix >=1.10.0,<1.11.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-checkmate
+    - r-data.table
+    - r-drc
+    - r-jsonlite
+    - r-jsonvalidate
+    - r-magrittr
+    - r-stringr
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'A package with helper functions for processing drug response data'
+  description: 'This package contains utility functions used throughout the gDR platform to fit data, manipulate data, and convert and validate data structures. This package also has the necessary default constants for gDR platform. Many of the functions are utilized by the gDRcore package.'
+
diff --git a/recipes/bioconductor-gdsarray/meta.yaml b/recipes/bioconductor-gdsarray/meta.yaml
index 25d7d2c956c81..66ec184fb02c7 100644
--- a/recipes/bioconductor-gdsarray/meta.yaml
+++ b/recipes/bioconductor-gdsarray/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "GDSArray" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: bbc6fe4ba9fe9379724590bb868e6332
+  md5: 3ae99d95017d67dd67e17f47436f0301
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gdsarray", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, markdown, rmarkdown, BiocStyle, BiocManager
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-seqarray >=1.40.0,<1.41.0'
-    - 'bioconductor-snprelate >=1.34.0,<1.35.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-seqarray >=1.42.0,<1.43.0'
+    - 'bioconductor-snprelate >=1.36.0,<1.37.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-seqarray >=1.40.0,<1.41.0'
-    - 'bioconductor-snprelate >=1.34.0,<1.35.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-seqarray >=1.42.0,<1.43.0'
+    - 'bioconductor-snprelate >=1.36.0,<1.37.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-gdsfmt/meta.yaml b/recipes/bioconductor-gdsfmt/meta.yaml
index eb66ba4b7c045..7569c70324307 100644
--- a/recipes/bioconductor-gdsfmt/meta.yaml
+++ b/recipes/bioconductor-gdsfmt/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.1" %}
+{% set version = "1.38.0" %}
 {% set name = "gdsfmt" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 7e54216f1539f908f188665986552ab5
+  md5: 8851c188356c12f7e99488ceb4daeca8
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gdsfmt", max_pin="x.x") }}'
 # Suggests: parallel, digest, Matrix, crayon, RUnit, knitr, markdown, rmarkdown, BiocGenerics
 requirements:
   host:
@@ -39,6 +40,8 @@ about:
   description: 'Provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files. GDS is portable across platforms with hierarchical structure to store multiple scalable array-oriented data sets with metadata information. It is suited for large-scale datasets, especially for data which are much larger than the available random-access memory. The gdsfmt package offers the efficient operations specifically designed for integers of less than 8 bits, since a diploid genotype, like single-nucleotide polymorphism (SNP), usually occupies fewer bits than a byte. Data compression and decompression are available with relatively efficient random access. It is also allowed to read a GDS file in parallel with multiple R processes supported by the package parallel.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/LGPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   parent_recipe:
     name: bioconductor-gdsfmt
     path: recipes/bioconductor-gdsfmt
diff --git a/recipes/bioconductor-gem/meta.yaml b/recipes/bioconductor-gem/meta.yaml
index 72cf2fdcff018..3cb07be59e5e2 100644
--- a/recipes/bioconductor-gem/meta.yaml
+++ b/recipes/bioconductor-gem/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "GEM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c3380a1e025f9cae67a0d51dba6afa7a
+  md5: 2c2c8e79fda151dee0060411c9610ff4
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gem", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, RUnit, testthat, BiocGenerics, rmarkdown, markdown
 requirements:
diff --git a/recipes/bioconductor-gemini/meta.yaml b/recipes/bioconductor-gemini/meta.yaml
index 67a4b1e9adcb7..974ee79f5a978 100644
--- a/recipes/bioconductor-gemini/meta.yaml
+++ b/recipes/bioconductor-gemini/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "gemini" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: a753f3c9edcc5daa937e60bdf51defa6
+  md5: e8c26d0e8208f56017c8c83a17582f37
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gemini", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat
 requirements:
diff --git a/recipes/bioconductor-gemma.r/meta.yaml b/recipes/bioconductor-gemma.r/meta.yaml
index ad53496689310..d15d66baff3ab 100644
--- a/recipes/bioconductor-gemma.r/meta.yaml
+++ b/recipes/bioconductor-gemma.r/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "2.0.0" %}
 {% set name = "gemma.R" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9a3bb3ba1d43da242f629d1fbe0025fd
+  md5: 404ce4fa50032ebf727cfdccece32ba2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gemma.r", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 2.0.0), rmarkdown, knitr, dplyr, covr, ggplot2, ggrepel, BiocStyle, microbenchmark, magick, purrr, pheatmap, viridis, poolr, digest
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - r-bit64
     - r-data.table
+    - r-digest
     - r-glue
     - r-httr
     - r-jsonlite
@@ -39,15 +41,15 @@ requirements:
     - r-stringr
     - r-tibble
     - r-tidyr
-    - r-digest
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - r-bit64
     - r-data.table
+    - r-digest
     - r-glue
     - r-httr
     - r-jsonlite
@@ -59,7 +61,6 @@ requirements:
     - r-stringr
     - r-tibble
     - r-tidyr
-    - r-digest
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-genarise/meta.yaml b/recipes/bioconductor-genarise/meta.yaml
index 4ab4cff3db280..ade2b312fe4f8 100644
--- a/recipes/bioconductor-genarise/meta.yaml
+++ b/recipes/bioconductor-genarise/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.76.0" %} 
+{% set version = "1.78.0" %}
 {% set name = "genArise" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5ae9d863347d759aeac2262402b9ba2f
+  md5: d81489147ccfe688c07c228b7fcfcf7d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genarise", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-geneattribution/meta.yaml b/recipes/bioconductor-geneattribution/meta.yaml
index c548dc31b64f9..e0e87d633ea5f 100644
--- a/recipes/bioconductor-geneattribution/meta.yaml
+++ b/recipes/bioconductor-geneattribution/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "geneAttribution" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,32 +11,33 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3dfe81a4044fe2d88cdef174a85cb7b8
+  md5: 62d05af7aabb146fb41a5d91fa460dff
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-geneattribution", max_pin="x.x") }}'
   noarch: generic
 # Suggests: TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Hsapiens.UCSC.hg19.knownGene, knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-genebreak/meta.yaml b/recipes/bioconductor-genebreak/meta.yaml
index b137ef0843179..fded2e8fdf46a 100644
--- a/recipes/bioconductor-genebreak/meta.yaml
+++ b/recipes/bioconductor-genebreak/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "GeneBreak" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ba0252965f6f22957eb6ecbd57e8fb32
+  md5: 32b69bf4150c25c908235217dc805ed3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genebreak", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-cghbase >=1.60.0,<1.61.0'
-    - 'bioconductor-cghcall >=2.62.0,<2.63.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-qdnaseq >=1.36.0,<1.37.0'
+    - 'bioconductor-cghbase >=1.62.0,<1.63.0'
+    - 'bioconductor-cghcall >=2.64.0,<2.65.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-qdnaseq >=1.38.0,<1.39.0'
     - r-base
   run:
-    - 'bioconductor-cghbase >=1.60.0,<1.61.0'
-    - 'bioconductor-cghcall >=2.62.0,<2.63.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-qdnaseq >=1.36.0,<1.37.0'
+    - 'bioconductor-cghbase >=1.62.0,<1.63.0'
+    - 'bioconductor-cghcall >=2.64.0,<2.65.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-qdnaseq >=1.38.0,<1.39.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-geneclassifiers/meta.yaml b/recipes/bioconductor-geneclassifiers/meta.yaml
index 9e957638335a5..1bbd879fd921b 100644
--- a/recipes/bioconductor-geneclassifiers/meta.yaml
+++ b/recipes/bioconductor-geneclassifiers/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "geneClassifiers" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1718d2e4ca0d91d6d292acb46a3c712a
+  md5: 79b7de2354913e5a91e6026f3f815a46
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-geneclassifiers", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-geneexpressionsignature/meta.yaml b/recipes/bioconductor-geneexpressionsignature/meta.yaml
index 8a88f5ad130c6..784b7d4b4cc8a 100644
--- a/recipes/bioconductor-geneexpressionsignature/meta.yaml
+++ b/recipes/bioconductor-geneexpressionsignature/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "GeneExpressionSignature" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 13984cbd32793c3241e81ab4ca1fa33e
+  md5: ee82254ee781e3cd6657c89d94e052b3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-geneexpressionsignature", max_pin="x.x") }}'
   noarch: generic
 # Suggests: apcluster, GEOquery, knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-genefilter/meta.yaml b/recipes/bioconductor-genefilter/meta.yaml
index c39b2d22d053c..0c9c1b258bc3d 100644
--- a/recipes/bioconductor-genefilter/meta.yaml
+++ b/recipes/bioconductor-genefilter/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.82.1" %}
+{% set version = "1.84.0" %}
 {% set name = "genefilter" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 06f347aaeeb8cb036bb7df7dfe1c67fb
+  md5: 15011d1662a58967aeb3e89f1f660e40
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genefilter", max_pin="x.x") }}'
 # Suggests: class, hgu95av2.db, tkWidgets, ALL, ROC, RColorBrewer, BiocStyle, knitr
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
     - r-base
     - r-survival
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
     - r-base
     - r-survival
   build:
@@ -49,6 +50,8 @@ about:
   summary: 'genefilter: methods for filtering genes from high-throughput experiments'
   description: 'Some basic functions for filtering genes.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:genefilter
     - doi:10.1038/nmeth.3252
diff --git a/recipes/bioconductor-genefu/meta.yaml b/recipes/bioconductor-genefu/meta.yaml
index 6480c3e1fad27..c9f8b815ed663 100644
--- a/recipes/bioconductor-genefu/meta.yaml
+++ b/recipes/bioconductor-genefu/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.32.0" %}
+{% set version = "2.34.0" %}
 {% set name = "genefu" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c0fe8ccf39d5090209936c71224c2301
+  md5: cfaef57b66d09a355ae7df0db21c107d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genefu", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GeneMeta, breastCancerVDX, breastCancerMAINZ, breastCancerTRANSBIG, breastCancerUPP, breastCancerUNT, breastCancerNKI, rmeta, Biobase, xtable, knitr, caret, survival, BiocStyle, magick, rmarkdown
 requirements:
   host:
-    - 'bioconductor-aims >=1.32.0,<1.33.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-survcomp >=1.50.0,<1.51.0'
+    - 'bioconductor-aims >=1.34.0,<1.35.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-survcomp >=1.52.0,<1.53.0'
     - r-amap
     - r-base
     - r-ic10
     - r-mclust
   run:
-    - 'bioconductor-aims >=1.32.0,<1.33.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-survcomp >=1.50.0,<1.51.0'
+    - 'bioconductor-aims >=1.34.0,<1.35.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-survcomp >=1.52.0,<1.53.0'
     - r-amap
     - r-base
     - r-ic10
diff --git a/recipes/bioconductor-genega/build.sh b/recipes/bioconductor-genega/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-genega/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-genega/meta.yaml b/recipes/bioconductor-genega/meta.yaml
new file mode 100644
index 0000000000000..296123222ca7a
--- /dev/null
+++ b/recipes/bioconductor-genega/meta.yaml
@@ -0,0 +1,40 @@
+{% set version = "1.52.0" %}
+{% set name = "GeneGA" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 3047f864af1845ce91869fc2560733c4
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genega", max_pin="x.x") }}'
+  noarch: generic
+requirements:
+  host:
+    - r-base
+    - r-hash
+    - r-seqinr
+  run:
+    - r-base
+    - r-hash
+    - r-seqinr
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'GPL version 2'
+  summary: 'Design gene based on both mRNA secondary structure and codon usage bias using Genetic algorithm'
+  description: 'R based Genetic algorithm for gene expression optimization by considering both mRNA secondary structure and codon usage bias, GeneGA includes the information of highly expressed genes of almost 200 genomes. Meanwhile, Vienna RNA Package is needed to ensure GeneGA to function properly.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2'
+
diff --git a/recipes/bioconductor-genegeneinter/meta.yaml b/recipes/bioconductor-genegeneinter/meta.yaml
index 03f30e758faf8..ea75dfc6378c3 100644
--- a/recipes/bioconductor-genegeneinter/meta.yaml
+++ b/recipes/bioconductor-genegeneinter/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "GeneGeneInteR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4764cc9239b96f79d0dd56ad6774ec44
+  md5: 119efde24626155c173e9b24b5f2c9e6
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genegeneinter", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-snpstats >=1.50.0,<1.51.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-snpstats >=1.52.0,<1.53.0'
     - r-base
     - r-data.table
     - r-factominer
@@ -32,10 +33,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-snpstats >=1.50.0,<1.51.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-snpstats >=1.52.0,<1.53.0'
     - r-base
     - r-data.table
     - r-factominer
@@ -51,8 +52,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'GPL (>= 2)'
+  license: 'GPL-3.0.-or-later'
   summary: 'Tools for Testing Gene-Gene Interaction at the Gene Level'
   description: 'The aim of this package is to propose several methods for testing gene-gene interaction in case-control association studies. Such a test can be done by aggregating SNP-SNP interaction tests performed at the SNP level (SSI) or by using gene-gene multidimensionnal methods (GGI) methods. The package also proposes tools for a graphic display of the results. <doi:10.18637/jss.v095.i12>.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
\ No newline at end of file
diff --git a/recipes/bioconductor-genelendatabase/meta.yaml b/recipes/bioconductor-genelendatabase/meta.yaml
index af599c18cb481..7619efdaf2175 100644
--- a/recipes/bioconductor-genelendatabase/meta.yaml
+++ b/recipes/bioconductor-genelendatabase/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "geneLenDataBase" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3063a75a94ecd65185c3490a1baba601
+  md5: c29099d3142aad07590e22ce37c6acf3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genelendatabase", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
   run:
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-genelendatabase/post-link.sh b/recipes/bioconductor-genelendatabase/post-link.sh
index 70d73fa6e2f73..5423b1add506e 100644
--- a/recipes/bioconductor-genelendatabase/post-link.sh
+++ b/recipes/bioconductor-genelendatabase/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "genelendatabase-1.36.0"
+installBiocDataPackage.sh "genelendatabase-1.38.0"
diff --git a/recipes/bioconductor-genemeta/meta.yaml b/recipes/bioconductor-genemeta/meta.yaml
index 79f0a57e7e661..46829e4dab0d2 100644
--- a/recipes/bioconductor-genemeta/meta.yaml
+++ b/recipes/bioconductor-genemeta/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "GeneMeta" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: aa838d8d2428d4d9337732db43dc84f8
+  md5: 9d9d2d3dff0ee8a497ac86b5ef8ddac7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genemeta", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RColorBrewer
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-genenetworkbuilder/meta.yaml b/recipes/bioconductor-genenetworkbuilder/meta.yaml
index 2ef96e766b715..840e50663cdde 100644
--- a/recipes/bioconductor-genenetworkbuilder/meta.yaml
+++ b/recipes/bioconductor-genenetworkbuilder/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "GeneNetworkBuilder" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 17f9146e215456d82474c6afd253cbcd
+  md5: aedb0b143d59865acfad5ce4d635ff77
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genenetworkbuilder", max_pin="x.x") }}'
 # Suggests: RUnit, BiocGenerics, RBGL, knitr, simpIntLists, shiny, STRINGdb, BiocStyle, magick, rmarkdown, org.Hs.eg.db
 requirements:
   host:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-htmlwidgets
     - r-plyr
@@ -31,8 +32,8 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-htmlwidgets
     - r-plyr
@@ -48,8 +49,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'GPL (>= 2)'
+  license: 'GPL-3.0-or-later'
   summary: 'GeneNetworkBuilder: a bioconductor package for building regulatory network using ChIP-chip/ChIP-seq data and Gene Expression Data'
   description: 'Appliation for discovering direct or indirect targets of transcription factors using ChIP-chip or ChIP-seq, and microarray or RNA-seq gene expression data. Inputting a list of genes of potential targets of one TF from ChIP-chip or ChIP-seq, and the gene expression results, GeneNetworkBuilder generates a regulatory network of the TF.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
diff --git a/recipes/bioconductor-geneoverlap/meta.yaml b/recipes/bioconductor-geneoverlap/meta.yaml
index f2da503615aa5..3912599cb2a10 100644
--- a/recipes/bioconductor-geneoverlap/meta.yaml
+++ b/recipes/bioconductor-geneoverlap/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "GeneOverlap" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ddbc52b3f7cb42b24e0563c3d1039181
+  md5: 0b5179a1183a82869935ca6c2c55aab3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-geneoverlap", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, BiocStyle
 requirements:
diff --git a/recipes/bioconductor-geneplast.data.string.v91/meta.yaml b/recipes/bioconductor-geneplast.data.string.v91/meta.yaml
index 8e04e55589622..db3e08458d885 100644
--- a/recipes/bioconductor-geneplast.data.string.v91/meta.yaml
+++ b/recipes/bioconductor-geneplast.data.string.v91/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.6" %}
 {% set name = "geneplast.data.string.v91" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 86433f8489d9228c5ed73e2b75a55398
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-geneplast.data.string.v91", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-geneplast.data/meta.yaml b/recipes/bioconductor-geneplast.data/meta.yaml
index a7873a0336455..20f45bdf6867b 100644
--- a/recipes/bioconductor-geneplast.data/meta.yaml
+++ b/recipes/bioconductor-geneplast.data/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.99.6" %}
+{% set version = "0.99.7" %}
 {% set name = "geneplast.data" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,40 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 08ddcdb9b1cf56dab5fe358c85fe1526
+  md5: ef658e131138d87033fcd985c38cf45f
 build:
-  number: 2
+  number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-geneplast.data", max_pin="x.x") }}'
   noarch: generic
 # Suggests: geneplast, BiocGenerics, BiocStyle, knitr, rmarkdown
 requirements:
   host:
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-geneplast >=1.28.0,<1.29.0'
+    - 'bioconductor-treeio >=1.26.0,<1.27.0'
+    - r-ape
     - r-base
+    - r-dplyr
+    - r-igraph
+    - r-purrr
+    - r-readr
+    - r-tibble
   run:
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-geneplast >=1.28.0,<1.29.0'
+    - 'bioconductor-treeio >=1.26.0,<1.27.0'
+    - r-ape
     - r-base
+    - r-dplyr
+    - r-igraph
+    - r-purrr
+    - r-readr
+    - r-tibble
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-geneplast.data/post-link.sh b/recipes/bioconductor-geneplast.data/post-link.sh
index 970dff7551c64..879df13431c7f 100644
--- a/recipes/bioconductor-geneplast.data/post-link.sh
+++ b/recipes/bioconductor-geneplast.data/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "geneplast.data-0.99.6"
+installBiocDataPackage.sh "geneplast.data-0.99.7"
diff --git a/recipes/bioconductor-geneplast/meta.yaml b/recipes/bioconductor-geneplast/meta.yaml
index 5f40829a0c17c..c78eca2385118 100644
--- a/recipes/bioconductor-geneplast/meta.yaml
+++ b/recipes/bioconductor-geneplast/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "geneplast" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 38d4e706cda6dee7ef9ca9e3bf4e7c23
+  md5: 2cb6b3ec6dbd0978146ea5139cc06e60
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-geneplast", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RTN, RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown, Fletcher2013b, geneplast.data, geneplast.data.string.v91, ggplot2, ggpubr, plyr
 requirements:
diff --git a/recipes/bioconductor-geneplotter/meta.yaml b/recipes/bioconductor-geneplotter/meta.yaml
index e1dd4c0c5091a..67627719ca339 100644
--- a/recipes/bioconductor-geneplotter/meta.yaml
+++ b/recipes/bioconductor-geneplotter/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.78.0" %}
+{% set version = "1.80.0" %}
 {% set name = "geneplotter" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 58bd98605be308d6dd876b6d9fcb10b5
+  md5: 29d4ec34db2e953fc9b7306f4d3b7733
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-geneplotter", max_pin="x.x") }}'
   noarch: generic
-# Suggests: Rgraphviz, fibroEset, hgu95av2.db, hu6800.db, hgu133a.db
+# Suggests: Rgraphviz, fibroEset, hgu95av2.db, hu6800.db, hgu133a.db, BiocStyle, knitr
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-lattice
     - r-rcolorbrewer
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-lattice
     - r-rcolorbrewer
diff --git a/recipes/bioconductor-generecommender/meta.yaml b/recipes/bioconductor-generecommender/meta.yaml
index fa96fc46b2655..55b5c7e1ae759 100644
--- a/recipes/bioconductor-generecommender/meta.yaml
+++ b/recipes/bioconductor-generecommender/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "geneRecommender" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cafc0026010c2cd8bbe5b81fe0957e46
+  md5: cd697c11912a8f48b5ceaf0abfbb206e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-generecommender", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-generegionscan/meta.yaml b/recipes/bioconductor-generegionscan/meta.yaml
index a6525458e7681..c81ed957e93b0 100644
--- a/recipes/bioconductor-generegionscan/meta.yaml
+++ b/recipes/bioconductor-generegionscan/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.56.0" %}
+{% set version = "1.58.0" %}
 {% set name = "GeneRegionScan" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5c4b75b0cc7beb7f8b3ad6a3e52a93a5
+  md5: 9b3e0cfd305d2db2aae5cfd4003e56a7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-generegionscan", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome, affy, AnnotationDbi
 requirements:
   host:
-    - 'bioconductor-affxparser >=1.72.0,<1.73.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-affxparser >=1.74.0,<1.75.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-rcolorbrewer
   run:
-    - 'bioconductor-affxparser >=1.72.0,<1.73.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-affxparser >=1.74.0,<1.75.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-rcolorbrewer
 test:
diff --git a/recipes/bioconductor-generxcluster/meta.yaml b/recipes/bioconductor-generxcluster/meta.yaml
index fac45bf16a238..47294fc1e4560 100644
--- a/recipes/bioconductor-generxcluster/meta.yaml
+++ b/recipes/bioconductor-generxcluster/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "geneRxCluster" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8ec6aade79eab7d5be66b90c84b9588e
+  md5: 61f7d4c5cd314cf84f8648b3097f65b1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-generxcluster", max_pin="x.x") }}'
 # Suggests: RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-geneselectmmd/meta.yaml b/recipes/bioconductor-geneselectmmd/meta.yaml
index 576bc392a9563..f28cf53ec6c7b 100644
--- a/recipes/bioconductor-geneselectmmd/meta.yaml
+++ b/recipes/bioconductor-geneselectmmd/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.44.1" %}
+{% set version = "2.46.0" %}
 {% set name = "GeneSelectMMD" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6552e99f88c6a84d5a34da69b07fb137
+  md5: dd6cd07bbe095fca03ce4b134c1507b8
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-geneselectmmd", max_pin="x.x") }}'
 # Suggests: ALL
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-mass
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-mass
   build:
@@ -40,8 +41,14 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'GPL (>= 2)'
+  license: 'GPL-3.0-or-later'
   summary: 'Gene selection based on the marginal distributions of gene profiles that characterized by a mixture of three-component multivariate distributions'
   description: 'Gene selection based on a mixture of marginal distributions.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
+    - usegalaxy-eu:{{ name|lower }}
diff --git a/recipes/bioconductor-genesis/meta.yaml b/recipes/bioconductor-genesis/meta.yaml
index 7a545c218c54d..49123fdd70790 100644
--- a/recipes/bioconductor-genesis/meta.yaml
+++ b/recipes/bioconductor-genesis/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.30.0" %}
+{% set version = "2.32.0" %}
 {% set name = "GENESIS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 505a2cf97bef5db3db33657c43937f25
+  md5: 909c6b6ea17b2de1716f3a5102caa0df
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genesis", max_pin="x.x") }}'
 # Suggests: CompQuadForm, COMPoissonReg, poibin, SPAtest, survey, testthat, BiocStyle, knitr, rmarkdown, GWASdata, dplyr, ggplot2, GGally, RColorBrewer, TxDb.Hsapiens.UCSC.hg19.knownGene
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gwastools >=1.46.0,<1.47.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-seqarray >=1.40.0,<1.41.0'
-    - 'bioconductor-seqvartools >=1.38.0,<1.39.0'
-    - 'bioconductor-snprelate >=1.34.0,<1.35.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gwastools >=1.48.0,<1.49.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-seqarray >=1.42.0,<1.43.0'
+    - 'bioconductor-seqvartools >=1.40.0,<1.41.0'
+    - 'bioconductor-snprelate >=1.36.0,<1.37.0'
     - r-base
     - r-data.table
     - r-igraph
@@ -39,17 +40,17 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gwastools >=1.46.0,<1.47.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-seqarray >=1.40.0,<1.41.0'
-    - 'bioconductor-seqvartools >=1.38.0,<1.39.0'
-    - 'bioconductor-snprelate >=1.34.0,<1.35.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gwastools >=1.48.0,<1.49.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-seqarray >=1.42.0,<1.43.0'
+    - 'bioconductor-seqvartools >=1.40.0,<1.41.0'
+    - 'bioconductor-snprelate >=1.36.0,<1.37.0'
     - r-base
     - r-data.table
     - r-igraph
diff --git a/recipes/bioconductor-genestructuretools/meta.yaml b/recipes/bioconductor-genestructuretools/meta.yaml
index bf24c68b375c4..b68d6a11f06d2 100644
--- a/recipes/bioconductor-genestructuretools/meta.yaml
+++ b/recipes/bioconductor-genestructuretools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "GeneStructureTools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 328a3a8ae004e92c4bf515807fe4878c
+  md5: 513385498b639ea6acc724bb3795de38
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genestructuretools", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - 'bioconductor-bsgenome.mmusculus.ucsc.mm10 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-plyr
     - r-stringdist
     - r-stringr
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - 'bioconductor-bsgenome.mmusculus.ucsc.mm10 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-plyr
diff --git a/recipes/bioconductor-genesummary/meta.yaml b/recipes/bioconductor-genesummary/meta.yaml
index 1f56999b19e6c..3f59623599845 100644
--- a/recipes/bioconductor-genesummary/meta.yaml
+++ b/recipes/bioconductor-genesummary/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.99.4" %}
+{% set version = "0.99.6" %}
 {% set name = "GeneSummary" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 39ee728e42c42ccf200568c9c736b15c
+  md5: 9df029a96bf0fa5bb76ee8b8923c458c
 build:
-  number: 1
+  number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genesummary", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, markdown, testthat
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-genesummary/post-link.sh b/recipes/bioconductor-genesummary/post-link.sh
index 536bca09030a3..542c1ac8a9539 100644
--- a/recipes/bioconductor-genesummary/post-link.sh
+++ b/recipes/bioconductor-genesummary/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "genesummary-0.99.4"
+installBiocDataPackage.sh "genesummary-0.99.6"
diff --git a/recipes/bioconductor-genetclassifier/meta.yaml b/recipes/bioconductor-genetclassifier/meta.yaml
index 4b1142313a1ff..d449d168bddc2 100644
--- a/recipes/bioconductor-genetclassifier/meta.yaml
+++ b/recipes/bioconductor-genetclassifier/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "geNetClassifier" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 225d0b3e450c41009734391c48982794
+  md5: 7fed3e42e9ec93956b71960e271aa090
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genetclassifier", max_pin="x.x") }}'
   noarch: generic
 # Suggests: leukemiasEset, RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-ebarrays >=2.64.0,<2.65.0'
-    - 'bioconductor-minet >=3.58.0,<3.59.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-ebarrays >=2.66.0,<2.67.0'
+    - 'bioconductor-minet >=3.60.0,<3.61.0'
     - r-base
     - r-e1071
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-ebarrays >=2.64.0,<2.65.0'
-    - 'bioconductor-minet >=3.58.0,<3.59.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-ebarrays >=2.66.0,<2.67.0'
+    - 'bioconductor-minet >=3.60.0,<3.61.0'
     - r-base
     - r-e1071
 test:
diff --git a/recipes/bioconductor-geneticsped/meta.yaml b/recipes/bioconductor-geneticsped/meta.yaml
index 96bda76dee472..d2fc3bea27908 100644
--- a/recipes/bioconductor-geneticsped/meta.yaml
+++ b/recipes/bioconductor-geneticsped/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.62.1" %}
+{% set version = "1.64.0" %}
 {% set name = "GeneticsPed" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 49e37937196a5ec28dafaa5f2c6c0dda
+  md5: 7d2a79c363e79459dd3edf3b4571f313
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-geneticsped", max_pin="x.x") }}'
 # Suggests: RUnit, gtools
 requirements:
   host:
@@ -46,3 +47,6 @@ about:
   description: 'Classes and methods for handling pedigree data. It also includes functions to calculate genetic relationship measures as relationship and inbreeding coefficients and other utilities. Note that package is not yet stable. Use it with care!'
   license_file: LICENSE
 
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/bioconductor-genetonic/meta.yaml b/recipes/bioconductor-genetonic/meta.yaml
index 7d83f66968092..4c8e329fd8f3d 100644
--- a/recipes/bioconductor-genetonic/meta.yaml
+++ b/recipes/bioconductor-genetonic/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.4.0" %}
+{% set version = "2.6.0" %}
 {% set name = "GeneTonic" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 012923a30c9d452dd7c826205ecc487d
+  md5: efbbb39095cb7ff8af87ed47d058d8d8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genetonic", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, htmltools, clusterProfiler, macrophage, org.Hs.eg.db, magrittr, testthat (>= 2.1.0)
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-backbone
     - r-base
     - 'r-bs4dash >=2.0.0'
@@ -60,12 +61,12 @@ requirements:
     - r-viridis
     - r-visnetwork
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-backbone
     - r-base
     - 'r-bs4dash >=2.0.0'
diff --git a/recipes/bioconductor-genextender/meta.yaml b/recipes/bioconductor-genextender/meta.yaml
index 896b13b8fdf81..cc7257f170ded 100644
--- a/recipes/bioconductor-genextender/meta.yaml
+++ b/recipes/bioconductor-genextender/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "geneXtendeR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 39265282123addaf808976a865e308a1
+  md5: 63ab36f83aa3d05bf932dc3c0e0c173a
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genextender", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, testthat, org.Ag.eg.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db, org.Dr.eg.db, org.Gg.eg.db, org.Hs.eg.db, org.Mm.eg.db, org.Pt.eg.db, org.Sc.sgd.db, org.Ss.eg.db, org.Xl.eg.db, rtracklayer
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -36,11 +37,11 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -57,8 +58,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'GPL (>= 3)'
+  license: 'GPL-3.0-or-later'
   summary: 'Optimized Functional Annotation Of ChIP-seq Data'
   description: 'geneXtendeR optimizes the functional annotation of ChIP-seq peaks by exploring relative differences in annotating ChIP-seq peak sets to variable-length gene bodies.  In contrast to prior techniques, geneXtendeR considers peak annotations beyond just the closest gene, allowing users to see peak summary statistics for the first-closest gene, second-closest gene, ..., n-closest gene whilst ranking the output according to biologically relevant events and iteratively comparing the fidelity of peak-to-gene overlap across a user-defined range of upstream and downstream extensions on the original boundaries of each gene''s coordinates.  Since different ChIP-seq peak callers produce different differentially enriched peaks with a large variance in peak length distribution and total peak count, annotating peak lists with their nearest genes can often be a noisy process.  As such, the goal of geneXtendeR is to robustly link differentially enriched peaks with their respective genes, thereby aiding experimental follow-up and validation in designing primers for a set of prospective gene candidates during qPCR.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
diff --git a/recipes/bioconductor-genie3/meta.yaml b/recipes/bioconductor-genie3/meta.yaml
index 9bbb0aef73375..bfc164119e27e 100644
--- a/recipes/bioconductor-genie3/meta.yaml
+++ b/recipes/bioconductor-genie3/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "GENIE3" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,13 +11,14 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 37c69218e0e7a1e204d4762de1125c4f
+  md5: fb7d197e0e34175eba7dd31608aa67d6
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
-# Suggests: knitr, rmarkdown, foreach, doRNG, doParallel, Biobase, SummarizedExperiment, testthat, methods
+  run_exports: '{{ pin_subpackage("bioconductor-genie3", max_pin="x.x") }}'
+# Suggests: knitr, rmarkdown, foreach, doRNG, doParallel, Biobase, SummarizedExperiment, testthat, methods, BiocStyle
 requirements:
   host:
     - r-base
diff --git a/recipes/bioconductor-genocn/meta.yaml b/recipes/bioconductor-genocn/meta.yaml
index e52d58a4e1fff..12d3392a05b05 100644
--- a/recipes/bioconductor-genocn/meta.yaml
+++ b/recipes/bioconductor-genocn/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.52.0" %}
+{% set version = "1.54.0" %}
 {% set name = "genoCN" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8b42af5b706f84966e90e5bc11fd129f
+  md5: ebc7fc5cb3b5c2bcd98718a7bcd95d6a
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genocn", max_pin="x.x") }}'
 requirements:
   host:
     - r-base
@@ -37,3 +38,6 @@ about:
   description: 'Simultaneous identification of copy number states and genotype calls for regions of either copy number variations or copy number aberrations'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/bioconductor-genomation/meta.yaml b/recipes/bioconductor-genomation/meta.yaml
index c1238d45396e5..447d7838acc42 100644
--- a/recipes/bioconductor-genomation/meta.yaml
+++ b/recipes/bioconductor-genomation/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "genomation" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 9c6f6732f5e75f74f3f27c60de3640e5
+  md5: 5453f50009f3f7227025431d4d10f4bb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genomation", max_pin="x.x") }}'
 # Suggests: BiocGenerics, genomationData, knitr, RColorBrewer, rmarkdown, RUnit
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-seqpattern >=1.32.0,<1.33.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-seqpattern >=1.34.0,<1.35.0'
     - r-base
     - r-data.table
     - r-ggplot2
@@ -44,17 +45,17 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-seqpattern >=1.32.0,<1.33.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-seqpattern >=1.34.0,<1.35.0'
     - r-base
     - r-data.table
     - r-ggplot2
diff --git a/recipes/bioconductor-genomationdata/meta.yaml b/recipes/bioconductor-genomationdata/meta.yaml
index 0a5f89afe117f..8cb6a2198f75f 100644
--- a/recipes/bioconductor-genomationdata/meta.yaml
+++ b/recipes/bioconductor-genomationdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "genomationData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4954915523744efa6d6b3be3feb376eb
+  md5: dc03eef7730719f7c66f72ca5e9915db
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genomationdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-genomationdata/post-link.sh b/recipes/bioconductor-genomationdata/post-link.sh
index 8656156c48e81..e092bd607d41b 100644
--- a/recipes/bioconductor-genomationdata/post-link.sh
+++ b/recipes/bioconductor-genomationdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "genomationdata-1.32.0"
+installBiocDataPackage.sh "genomationdata-1.34.0"
diff --git a/recipes/bioconductor-genomautomorphism/meta.yaml b/recipes/bioconductor-genomautomorphism/meta.yaml
index 89852d60869f8..e16df4a231b76 100644
--- a/recipes/bioconductor-genomautomorphism/meta.yaml
+++ b/recipes/bioconductor-genomautomorphism/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "GenomAutomorphism" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 53d0988019e357223e35df19cb2da04b
+  md5: 36ebcd90b454dc7450e875730537811b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genomautomorphism", max_pin="x.x") }}'
   noarch: generic
 # Suggests: spelling, rmarkdown, BiocStyle, testthat (>= 3.0.0), knitr
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-doparallel
@@ -35,13 +36,13 @@ requirements:
     - r-foreach
     - r-numbers
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-doparallel
diff --git a/recipes/bioconductor-genomeinfodb/meta.yaml b/recipes/bioconductor-genomeinfodb/meta.yaml
index 7cbd5ae154ce2..e033652eb641c 100644
--- a/recipes/bioconductor-genomeinfodb/meta.yaml
+++ b/recipes/bioconductor-genomeinfodb/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.1" %}
+{% set version = "1.38.1" %}
 {% set name = "GenomeInfoDb" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 635ff12af224e0f7902c35e3dc9166a8
+  md5: 4bb1aef4ea2a6422141e3024e11b85e1
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genomeinfodb", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicRanges, Rsamtools, GenomicAlignments, GenomicFeatures, TxDb.Dmelanogaster.UCSC.dm3.ensGene, BSgenome, BSgenome.Scerevisiae.UCSC.sacCer2, BSgenome.Celegans.UCSC.ce2, BSgenome.Hsapiens.NCBI.GRCh38, RUnit, BiocStyle, knitr
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - 'bioconductor-genomeinfodbdata >=1.2.0,<1.3.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-rcurl
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - 'bioconductor-genomeinfodbdata >=1.2.0,<1.3.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-rcurl
 test:
diff --git a/recipes/bioconductor-genomeinfodbdata/meta.yaml b/recipes/bioconductor-genomeinfodbdata/meta.yaml
index 4b55d8a8062a3..f4d61f874b1f7 100644
--- a/recipes/bioconductor-genomeinfodbdata/meta.yaml
+++ b/recipes/bioconductor-genomeinfodbdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.10" %}
+{% set version = "1.2.11" %}
 {% set name = "GenomeInfoDbData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ebd78c10d672c0eb6c893d6135bdeca9
+  md5: 2a4cbfc2031992fed3c9445f450890a2
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genomeinfodbdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-genomeinfodbdata/post-link.sh b/recipes/bioconductor-genomeinfodbdata/post-link.sh
index af44f56f53dbb..42b37c9d4d1ca 100644
--- a/recipes/bioconductor-genomeinfodbdata/post-link.sh
+++ b/recipes/bioconductor-genomeinfodbdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "genomeinfodbdata-1.2.10"
+installBiocDataPackage.sh "genomeinfodbdata-1.2.11"
diff --git a/recipes/bioconductor-genomeintervals/meta.yaml b/recipes/bioconductor-genomeintervals/meta.yaml
index c885e2e647ba8..a0b7c1292199a 100644
--- a/recipes/bioconductor-genomeintervals/meta.yaml
+++ b/recipes/bioconductor-genomeintervals/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.56.0" %}
+{% set version = "1.58.0" %}
 {% set name = "genomeIntervals" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 61b757f3185a04ee582d4dc6e438049d
+  md5: c47b9bb1293b799a7ac75fef82f45589
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genomeintervals", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-intervals >=0.14.0'
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-intervals >=0.14.0'
 test:
diff --git a/recipes/bioconductor-genomes/meta.yaml b/recipes/bioconductor-genomes/meta.yaml
index dfc0cd2e55aa1..580bd6df948d1 100644
--- a/recipes/bioconductor-genomes/meta.yaml
+++ b/recipes/bioconductor-genomes/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.30.0" %}
+{% set version = "3.32.0" %}
 {% set name = "genomes" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 09a34e355a35b551f3729d436f8c0c68
+  md5: 4c11ca2b7b1d4dfd1ffc178b1d9e87e2
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genomes", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-genomewidesnp5crlmm/meta.yaml b/recipes/bioconductor-genomewidesnp5crlmm/meta.yaml
index 3bb6161ae7521..5c85ea0ef7f2e 100644
--- a/recipes/bioconductor-genomewidesnp5crlmm/meta.yaml
+++ b/recipes/bioconductor-genomewidesnp5crlmm/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.6" %}
 {% set name = "genomewidesnp5Crlmm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: cc24140cd17758b8e09f4fe6c931526a
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genomewidesnp5crlmm", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-genomewidesnp6crlmm/meta.yaml b/recipes/bioconductor-genomewidesnp6crlmm/meta.yaml
index 86c00002d3b5a..097994bdee0b6 100644
--- a/recipes/bioconductor-genomewidesnp6crlmm/meta.yaml
+++ b/recipes/bioconductor-genomewidesnp6crlmm/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.7" %}
 {% set name = "genomewidesnp6Crlmm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 13dd5aef3d814524896f2f3013beb78b
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genomewidesnp6crlmm", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-genomicalignments/meta.yaml b/recipes/bioconductor-genomicalignments/meta.yaml
index 3342427f46583..a8dc964e444f8 100644
--- a/recipes/bioconductor-genomicalignments/meta.yaml
+++ b/recipes/bioconductor-genomicalignments/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "GenomicAlignments" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,37 +11,38 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9a9f56bd93dc00324d09899c195275c0
+  md5: a5b7669b8ef7444527c2e43c49840014
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genomicalignments", max_pin="x.x") }}'
 # Suggests: ShortRead, rtracklayer, BSgenome, GenomicFeatures, RNAseqData.HNRNPC.bam.chr14, pasillaBamSubset, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Dmelanogaster.UCSC.dm3.ensGene, BSgenome.Dmelanogaster.UCSC.dm3, BSgenome.Hsapiens.UCSC.hg19, DESeq2, edgeR, RUnit, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   build:
     - {{ compiler('c') }}
@@ -55,6 +56,8 @@ about:
   summary: 'Representation and manipulation of short genomic alignments'
   description: 'Provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:genomicalignments
   parent_recipe:
diff --git a/recipes/bioconductor-genomicdatacommons/meta.yaml b/recipes/bioconductor-genomicdatacommons/meta.yaml
index e07ffd0086e9d..fd0e442c7e4ad 100644
--- a/recipes/bioconductor-genomicdatacommons/meta.yaml
+++ b/recipes/bioconductor-genomicdatacommons/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.2" %}
+{% set version = "1.26.0" %}
 {% set name = "GenomicDataCommons" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7ddc3c5db11c0776b0323b935b59b220
+  md5: 6c945795f62ce3e0b470b07b892d3357
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genomicdatacommons", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, DT, testthat, listviewer, ggplot2, GenomicAlignments, Rsamtools, BiocParallel, TxDb.Hsapiens.UCSC.hg38.knownGene, VariantAnnotation, maftools, R.utils, data.table
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-dplyr
     - r-httr
@@ -32,10 +33,11 @@ requirements:
     - r-readr
     - r-rlang
     - r-tibble
+    - r-tidyr
     - r-xml2
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-dplyr
     - r-httr
@@ -45,6 +47,7 @@ requirements:
     - r-readr
     - r-rlang
     - r-tibble
+    - r-tidyr
     - r-xml2
 test:
   commands:
diff --git a/recipes/bioconductor-genomicdistributions/meta.yaml b/recipes/bioconductor-genomicdistributions/meta.yaml
index d1f2fedfc6aa1..fb182b1896bd6 100644
--- a/recipes/bioconductor-genomicdistributions/meta.yaml
+++ b/recipes/bioconductor-genomicdistributions/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "GenomicDistributions" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 851fd18793882aecf6c63c84f9005ce9
+  md5: 0b8c2d9df85f9884bb40e3fcd015c824
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genomicdistributions", max_pin="x.x") }}'
   noarch: generic
 # Suggests: AnnotationFilter, rtracklayer, testthat, knitr, BiocStyle, rmarkdown, GenomicDistributionsData
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-broom
     - r-data.table
@@ -34,10 +35,10 @@ requirements:
     - r-reshape2
     - r-scales
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-broom
     - r-data.table
diff --git a/recipes/bioconductor-genomicdistributionsdata/meta.yaml b/recipes/bioconductor-genomicdistributionsdata/meta.yaml
index beca31a1d93ac..2cb349acc7580 100644
--- a/recipes/bioconductor-genomicdistributionsdata/meta.yaml
+++ b/recipes/bioconductor-genomicdistributionsdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "GenomicDistributionsData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,39 +11,40 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 55e98f9b1fe5ee9ab222a5aa3866943a
+  md5: 84067e85ccbf3605bc1f5a1b7d8508ad
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genomicdistributionsdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-data.table
   run:
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-data.table
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-genomicdistributionsdata/post-link.sh b/recipes/bioconductor-genomicdistributionsdata/post-link.sh
index cfc600cc2e0c5..08f6cdb719a09 100644
--- a/recipes/bioconductor-genomicdistributionsdata/post-link.sh
+++ b/recipes/bioconductor-genomicdistributionsdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "genomicdistributionsdata-1.8.0"
+installBiocDataPackage.sh "genomicdistributionsdata-1.10.0"
diff --git a/recipes/bioconductor-genomicfeatures/meta.yaml b/recipes/bioconductor-genomicfeatures/meta.yaml
index e1a4b4a46bd5c..705fb92048fa5 100644
--- a/recipes/bioconductor-genomicfeatures/meta.yaml
+++ b/recipes/bioconductor-genomicfeatures/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.52.1" %}
+{% set version = "1.54.1" %}
 {% set name = "GenomicFeatures" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,45 +11,46 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fc478bb79f2628bc4c58de1ff8d33668
+  md5: 863085394fd911039eca1603e6393c1d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genomicfeatures", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RMariaDB, org.Mm.eg.db, org.Hs.eg.db, BSgenome, BSgenome.Hsapiens.UCSC.hg19 (>= 1.3.17), BSgenome.Celegans.UCSC.ce11, BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.17), mirbase.db, FDb.UCSC.tRNAs, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Celegans.UCSC.ce11.ensGene, TxDb.Dmelanogaster.UCSC.dm3.ensGene (>= 2.7.1), TxDb.Mmusculus.UCSC.mm10.knownGene (>= 3.4.7), TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts, TxDb.Hsapiens.UCSC.hg38.knownGene (>= 3.4.6), SNPlocs.Hsapiens.dbSNP144.GRCh38, Rsamtools, pasillaBamSubset (>= 0.0.5), GenomicAlignments (>= 1.15.7), ensembldb, AnnotationFilter, RUnit, BiocStyle, knitr, markdown
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocio >=1.10.0,<1.11.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocio >=1.12.0,<1.13.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-dbi
     - r-rcurl
     - 'r-rsqlite >=2.0'
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocio >=1.10.0,<1.11.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocio >=1.12.0,<1.13.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-dbi
     - r-rcurl
diff --git a/recipes/bioconductor-genomicfiles/meta.yaml b/recipes/bioconductor-genomicfiles/meta.yaml
index 36115b932696e..bb74043dc99a0 100644
--- a/recipes/bioconductor-genomicfiles/meta.yaml
+++ b/recipes/bioconductor-genomicfiles/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "GenomicFiles" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,42 +11,43 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5de71058341eb16a65d666bbd2618e5a
+  md5: 7a58dc35c19ed34afe95d505d15db3f4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genomicfiles", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, RUnit, genefilter, deepSNV, snpStats, knitr, RNAseqData.HNRNPC.bam.chr14, Biostrings, Homo.sapiens
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-genomicinstability/meta.yaml b/recipes/bioconductor-genomicinstability/meta.yaml
index a0061cbd2d814..01dd64732ea05 100644
--- a/recipes/bioconductor-genomicinstability/meta.yaml
+++ b/recipes/bioconductor-genomicinstability/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "genomicInstability" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4f8709d46b6e2870ab2771f7099dc895
+  md5: 0d7c244a904ea9286d4e965cddeaf2d7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genomicinstability", max_pin="x.x") }}'
   noarch: generic
 # Suggests: SingleCellExperiment, ExperimentHub, pROC
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-checkmate
     - r-mixtools
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-checkmate
     - r-mixtools
diff --git a/recipes/bioconductor-genomicinteractionnodes/meta.yaml b/recipes/bioconductor-genomicinteractionnodes/meta.yaml
index a00e6f85b7526..322240c8d1118 100644
--- a/recipes/bioconductor-genomicinteractionnodes/meta.yaml
+++ b/recipes/bioconductor-genomicinteractionnodes/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "GenomicInteractionNodes" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: da185a0ec49bd142ea1fb4c365599d45
+  md5: bacb75bdd25ea06d5102c1ef2648c588
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genomicinteractionnodes", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocStyle, knitr, rmarkdown, rtracklayer, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-genomicinteractions/meta.yaml b/recipes/bioconductor-genomicinteractions/meta.yaml
index 923de96395878..64e03a3fa483f 100644
--- a/recipes/bioconductor-genomicinteractions/meta.yaml
+++ b/recipes/bioconductor-genomicinteractions/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "GenomicInteractions" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b50a2df0c508f4d8f54a739de6b9cfbe
+  md5: f4bccdd21d639ba8b9907ced202c0082
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genomicinteractions", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, testthat
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -39,16 +40,16 @@ requirements:
     - r-igraph
     - r-stringr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-dplyr
diff --git a/recipes/bioconductor-genomicozone/meta.yaml b/recipes/bioconductor-genomicozone/meta.yaml
index 307bc8ba7dd6a..6c9364066561c 100644
--- a/recipes/bioconductor-genomicozone/meta.yaml
+++ b/recipes/bioconductor-genomicozone/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "GenomicOZone" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2ba77a29cf4e56d2fa6dcf8d38fc6982
+  md5: c975a4b1c29d471efe90a5bba68247bb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genomicozone", max_pin="x.x") }}'
   noarch: generic
 # Suggests: readxl, GEOquery, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-ckmeans.1d.dp >=4.3.0'
     - r-ggplot2
@@ -35,12 +36,12 @@ requirements:
     - r-plyr
     - r-rdpack
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-ckmeans.1d.dp >=4.3.0'
     - r-ggplot2
diff --git a/recipes/bioconductor-genomicplot/build.sh b/recipes/bioconductor-genomicplot/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-genomicplot/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-genomicplot/meta.yaml b/recipes/bioconductor-genomicplot/meta.yaml
new file mode 100644
index 0000000000000..de408ccbe32ff
--- /dev/null
+++ b/recipes/bioconductor-genomicplot/meta.yaml
@@ -0,0 +1,87 @@
+{% set version = "1.0.0" %}
+{% set name = "GenomicPlot" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: ff0cee9d866f4cea69ee355bdac1f574
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genomicplot", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: knitr, rmarkdown, AnnotationHub, AnnotationDbi, R.utils, Biobase, BSgenome.Hsapiens.UCSC.hg19, BiocFileCache, TxDb.Hsapiens.UCSC.hg19.knownGene (>= 3.2.2), BiocStyle, testthat
+requirements:
+  host:
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomation >=1.34.0,<1.35.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
+    - 'bioconductor-rcas >=1.28.0,<1.29.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - r-base
+    - r-circlize
+    - 'r-cowplot >=1.1.1'
+    - r-dplyr
+    - 'r-ggplot2 >=3.3.5'
+    - r-ggplotify
+    - r-ggpubr
+    - 'r-ggsci >=2.9'
+    - 'r-ggsignif >=0.6.3'
+    - 'r-scales >=1.2.0'
+    - r-tidyr
+    - r-venndiagram
+    - r-viridis
+  run:
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomation >=1.34.0,<1.35.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
+    - 'bioconductor-rcas >=1.28.0,<1.29.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - r-base
+    - r-circlize
+    - 'r-cowplot >=1.1.1'
+    - r-dplyr
+    - 'r-ggplot2 >=3.3.5'
+    - r-ggplotify
+    - r-ggpubr
+    - 'r-ggsci >=2.9'
+    - 'r-ggsignif >=0.6.3'
+    - 'r-scales >=1.2.0'
+    - r-tidyr
+    - r-venndiagram
+    - r-viridis
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-2
+  summary: 'Plot profiles of next generation sequencing data in genomic features'
+  description: 'Visualization of next generation sequencing (NGS) data is essential for interpreting high-throughput genomics experiment results. ''GenomicPlot'' facilitates plotting of NGS data in various formats (bam, bed, wig and bigwig); both coverage and enrichment over input can be computed and displayed with respect to genomic features (such as UTR, CDS, enhancer), and user defined genomic loci or regions. Statistical tests on signal intensity within user defined regions of interest can be performed and represented as boxplots or bar graphs. Parallel processing is used to speed up computation on multicore platforms. In addition to genomic plots which is suitable for displaying of coverage of genomic DNA (such as ChIPseq data), metagenomic (without introns) plots can also be made for RNAseq or CLIPseq data as well.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2'
+
diff --git a/recipes/bioconductor-genomicranges/meta.yaml b/recipes/bioconductor-genomicranges/meta.yaml
index ab068d4503ce5..c097a42a81db0 100644
--- a/recipes/bioconductor-genomicranges/meta.yaml
+++ b/recipes/bioconductor-genomicranges/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.52.0" %}
+{% set version = "1.54.1" %}
 {% set name = "GenomicRanges" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 84ff182b349311589f7eece03f22a593
+  md5: 19fe37133cae70c1c3a1a164e6c8eaed
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genomicranges", max_pin="x.x") }}'
 # Suggests: Matrix, Biobase, AnnotationDbi, annotate, Biostrings (>= 2.25.3), SummarizedExperiment (>= 0.1.5), Rsamtools (>= 1.13.53), GenomicAlignments, rtracklayer, BSgenome, GenomicFeatures, Gviz, VariantAnnotation, AnnotationHub, DESeq2, DEXSeq, edgeR, KEGGgraph, RNAseqData.HNRNPC.bam.chr14, pasillaBamSubset, KEGGREST, hgu95av2.db, hgu95av2probe, BSgenome.Scerevisiae.UCSC.sacCer2, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm10, TxDb.Athaliana.BioMart.plantsmart22, TxDb.Dmelanogaster.UCSC.dm3.ensGene, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Mmusculus.UCSC.mm10.knownGene, RUnit, digest, knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
   build:
     - {{ compiler('c') }}
@@ -47,6 +48,8 @@ about:
   summary: 'Representation and manipulation of genomic intervals'
   description: 'The ability to efficiently represent and manipulate genomic annotations and alignments is playing a central role when it comes to analyzing high-throughput sequencing data (a.k.a. NGS data). The GenomicRanges package defines general purpose containers for storing and manipulating genomic intervals and variables defined along a genome. More specialized containers for representing and manipulating short alignments against a reference genome, or a matrix-like summarization of an experiment, are defined in the GenomicAlignments and SummarizedExperiment packages, respectively. Both packages build on top of the GenomicRanges infrastructure.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:genomicranges
   parent_recipe:
diff --git a/recipes/bioconductor-genomicscores/meta.yaml b/recipes/bioconductor-genomicscores/meta.yaml
index e509330b4c55f..905f77be5004e 100644
--- a/recipes/bioconductor-genomicscores/meta.yaml
+++ b/recipes/bioconductor-genomicscores/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.12.0" %}
+{% set version = "2.14.1" %}
 {% set name = "GenomicScores" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,45 +11,46 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5f26842350f8a2fc457e2f434dd415d0
+  md5: 3f3be6b84303478d0d061081b2dcf261
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genomicscores", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocStyle, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19, phastCons100way.UCSC.hg19, MafDb.1Kgenomes.phase1.hs37d5, SNPlocs.Hsapiens.dbSNP144.GRCh37, VariantAnnotation, TxDb.Hsapiens.UCSC.hg19.knownGene, gwascat, RColorBrewer, shiny, shinyjs, shinycustomloader, data.table, DT, magrittr, shinydashboard
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-biocmanager
     - r-httr
     - r-xml
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-biocmanager
     - r-httr
diff --git a/recipes/bioconductor-genomicstate/meta.yaml b/recipes/bioconductor-genomicstate/meta.yaml
index 284f1eec4a561..641f4618a5d8d 100644
--- a/recipes/bioconductor-genomicstate/meta.yaml
+++ b/recipes/bioconductor-genomicstate/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.15" %}
 {% set name = "GenomicState" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,37 +13,38 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 59c2d85a72f62cb12bad697fcbce5edc
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genomicstate", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, sessioninfo, testthat (>= 2.1.0), glue, derfinderPlot, AnnotationHubData, RefManageR, GenomicRanges, covr
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-bumphunter >=1.42.0,<1.43.0'
-    - 'bioconductor-derfinder >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-bumphunter >=1.44.0,<1.45.0'
+    - 'bioconductor-derfinder >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-bumphunter >=1.42.0,<1.43.0'
-    - 'bioconductor-derfinder >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-bumphunter >=1.44.0,<1.45.0'
+    - 'bioconductor-derfinder >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-genomicsupersignature/meta.yaml b/recipes/bioconductor-genomicsupersignature/meta.yaml
index 8e732bb78eb01..231b42a102ceb 100644
--- a/recipes/bioconductor-genomicsupersignature/meta.yaml
+++ b/recipes/bioconductor-genomicsupersignature/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "GenomicSuperSignature" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f66e1c6addf266e6aa5523260c415e1f
+  md5: ecb55ebec91620ff435715563d8ba304
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genomicsupersignature", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, devtools, roxygen2, pkgdown, usethis, BiocStyle, testthat, forcats, stats, wordcloud, circlize, EnrichmentBrowser, clusterProfiler, msigdbr, cluster, RColorBrewer, reshape2, tibble, BiocManager, bcellViper, readr, utils
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-flextable
@@ -34,11 +35,11 @@ requirements:
     - r-irlba
     - r-plotly
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-flextable
diff --git a/recipes/bioconductor-genomictuples/meta.yaml b/recipes/bioconductor-genomictuples/meta.yaml
index 6de63c4f52739..f664c665aa978 100644
--- a/recipes/bioconductor-genomictuples/meta.yaml
+++ b/recipes/bioconductor-genomictuples/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "GenomicTuples" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 07e23d625f7467ef01b7eadaa4d6b19a
+  md5: 69e0c80982690604f35d9878f6640f37
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genomictuples", max_pin="x.x") }}'
 # Suggests: testthat, knitr, BiocStyle, rmarkdown, covr
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - 'r-rcpp >=0.11.2'
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - 'r-rcpp >=0.11.2'
diff --git a/recipes/bioconductor-genproseq/meta.yaml b/recipes/bioconductor-genproseq/meta.yaml
index b25797f9b5a78..0145607611a75 100644
--- a/recipes/bioconductor-genproseq/meta.yaml
+++ b/recipes/bioconductor-genproseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.2" %}
+{% set version = "1.6.0" %}
 {% set name = "GenProSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a8dd618e58f4e340ab6af9604c2378b7
+  md5: 15e772912f2019256df52d192edd5402
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genproseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ggseqlogo, VAExprs, stringdist, knitr, testthat, rmarkdown
 requirements:
   host:
-    - 'bioconductor-deeppincs >=1.8.0,<1.9.0'
-    - 'bioconductor-ttgsea >=1.8.0,<1.9.0'
+    - 'bioconductor-deeppincs >=1.10.0,<1.11.0'
+    - 'bioconductor-ttgsea >=1.10.0,<1.11.0'
     - r-base
     - r-catencoders
     - r-keras
@@ -31,8 +32,8 @@ requirements:
     - r-tensorflow
     - r-word2vec
   run:
-    - 'bioconductor-deeppincs >=1.8.0,<1.9.0'
-    - 'bioconductor-ttgsea >=1.8.0,<1.9.0'
+    - 'bioconductor-deeppincs >=1.10.0,<1.11.0'
+    - 'bioconductor-ttgsea >=1.10.0,<1.11.0'
     - r-base
     - r-catencoders
     - r-keras
diff --git a/recipes/bioconductor-genvisr/meta.yaml b/recipes/bioconductor-genvisr/meta.yaml
index a380858ba5d5c..1358bedd1c531 100644
--- a/recipes/bioconductor-genvisr/meta.yaml
+++ b/recipes/bioconductor-genvisr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.31.1" %}
+{% set version = "1.34.0" %}
 {% set name = "GenVisR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b2548a895a14be3c9cabc9a5ddde0e33
+  md5: f05fdc7c5736ba49ccf4eebcc1bc28ec
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-genvisr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, BSgenome.Hsapiens.UCSC.hg19, knitr, RMySQL, roxygen2, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene, rmarkdown, vdiffr, formatR, TxDb.Hsapiens.UCSC.hg38.knownGene, BSgenome.Hsapiens.UCSC.hg38
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-data.table
     - r-dbi
@@ -44,17 +45,17 @@ requirements:
     - r-scales
     - r-viridis
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-data.table
     - r-dbi
diff --git a/recipes/bioconductor-geodiff/meta.yaml b/recipes/bioconductor-geodiff/meta.yaml
index 00b6d228b2275..71a1b028708ae 100644
--- a/recipes/bioconductor-geodiff/meta.yaml
+++ b/recipes/bioconductor-geodiff/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "GeoDiff" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: bfc04b2a9de212b7848725ccddd33b8a
+  md5: f719fddf3486b6aad1f36ca439b55114
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-geodiff", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, dplyr
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-geomxtools >=3.4.0,<3.5.0'
-    - 'bioconductor-nanostringnctools >=1.8.0,<1.9.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-geomxtools >=3.5.0,<3.6.0'
+    - 'bioconductor-nanostringnctools >=1.10.0,<1.11.0'
     - r-base
     - r-lme4
     - r-matrix
@@ -36,9 +37,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-geomxtools >=3.4.0,<3.5.0'
-    - 'bioconductor-nanostringnctools >=1.8.0,<1.9.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-geomxtools >=3.5.0,<3.6.0'
+    - 'bioconductor-nanostringnctools >=1.10.0,<1.11.0'
     - r-base
     - r-lme4
     - r-matrix
diff --git a/recipes/bioconductor-geoexplorer/meta.yaml b/recipes/bioconductor-geoexplorer/meta.yaml
index 3bd3a3a3701cc..5002ad1d02b93 100644
--- a/recipes/bioconductor-geoexplorer/meta.yaml
+++ b/recipes/bioconductor-geoexplorer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "GEOexplorer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,64 +11,87 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e158f37de271fa9305fca41cf23b887a
+  md5: 213a1b499ce1d0640b267c8fb41e3204
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-geoexplorer", max_pin="x.x") }}'
   noarch: generic
-# Suggests: rmarkdown, knitr, usethis, testthat (>= 3.0.0)
+# Suggests: rmarkdown, usethis, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
+    - r-car
     - r-dt
+    - r-enrichr
     - r-factoextra
     - r-ggplot2
     - r-heatmaply
     - r-htmltools
-    - r-maptools
+    - r-httr
+    - r-knitr
+    - r-markdown
     - r-pheatmap
     - r-plotly
+    - r-r.utils
+    - r-readxl
     - r-scales
     - r-shiny
-    - r-shinybs
     - r-shinybusy
+    - r-shinycssloaders
     - r-shinyheatmaply
     - r-stringr
     - r-umap
+    - r-xfun
+    - r-xml
+    - r-xml2
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
+    - r-car
     - r-dt
+    - r-enrichr
     - r-factoextra
     - r-ggplot2
     - r-heatmaply
     - r-htmltools
-    - r-maptools
+    - r-httr
+    - r-knitr
+    - r-markdown
     - r-pheatmap
     - r-plotly
+    - r-r.utils
+    - r-readxl
     - r-scales
     - r-shiny
-    - r-shinybs
     - r-shinybusy
+    - r-shinycssloaders
     - r-shinyheatmaply
     - r-stringr
     - r-umap
+    - r-xfun
+    - r-xml
+    - r-xml2
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: GPL-3
-  summary: 'GEOexplorer: an R/Bioconductor package for gene expression analysis and visualisation'
-  description: 'GEOexplorer is a Shiny app that enables exploratory data analysis and differential gene expression of gene expression analysis on microarray gene expression datasets held on the GEO database. The outputs are interactive graphs that enable users to explore the results of the analysis. The development of GEOexplorer was made possible because of the excellent code provided by GEO2R (https: //www.ncbi.nlm.nih.gov/geo/geo2r/).'
+  summary: 'GEOexplorer: a webserver for gene expression analysis and visualisation'
+  description: 'GEOexplorer is a webserver and R/Bioconductor package and web application that enables users to perform gene expression analysis. The development of GEOexplorer was made possible because of the excellent code provided by GEO2R (https: //www.ncbi.nlm.nih.gov/geo/geo2r/).'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
diff --git a/recipes/bioconductor-geofastq/meta.yaml b/recipes/bioconductor-geofastq/meta.yaml
index f15f6a8c9aab1..df5a172e6e81f 100644
--- a/recipes/bioconductor-geofastq/meta.yaml
+++ b/recipes/bioconductor-geofastq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "GEOfastq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f5c8bc6ae8926e6a803a5b1df7b3aa49
+  md5: 339bd0c2f6a3f505457fc436997965a6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-geofastq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocCheck, roxygen2, knitr, rmarkdown, testthat
 requirements:
diff --git a/recipes/bioconductor-geometadb/meta.yaml b/recipes/bioconductor-geometadb/meta.yaml
index 7128400abbc16..dc42ecd5d1cfd 100644
--- a/recipes/bioconductor-geometadb/meta.yaml
+++ b/recipes/bioconductor-geometadb/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.62.0" %}
+{% set version = "1.64.0" %}
 {% set name = "GEOmetadb" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4c6a5daf43e682620906dc428a4cb6cc
+  md5: 78e0bce3aa72836e1b126536221059c6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-geometadb", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr, rmarkdown, dplyr, tm, wordcloud
+# Suggests: knitr, rmarkdown, dplyr, dbplyr, tm, wordcloud
 requirements:
   host:
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
     - r-base
     - r-rsqlite
   run:
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
     - r-base
     - r-rsqlite
 test:
diff --git a/recipes/bioconductor-geomxtools/meta.yaml b/recipes/bioconductor-geomxtools/meta.yaml
index 754dd51f882eb..f8e4400a66844 100644
--- a/recipes/bioconductor-geomxtools/meta.yaml
+++ b/recipes/bioconductor-geomxtools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.4.0" %}
+{% set version = "3.5.0" %}
 {% set name = "GeomxTools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1977ed1034bb7ae33b6ac8ff3d18d896
+  md5: 7ac9d92476a27e642927f906be2756db
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-geomxtools", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, knitr, testthat (>= 3.0.0), parallel, ggiraph, Seurat, SpatialExperiment (>= 1.4.0), SpatialDecon, patchwork
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-nanostringnctools >=1.8.0,<1.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-nanostringnctools >=1.10.0,<1.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -39,10 +40,10 @@ requirements:
     - r-seuratobject
     - r-stringr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-nanostringnctools >=1.8.0,<1.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-nanostringnctools >=1.10.0,<1.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-dplyr
diff --git a/recipes/bioconductor-geoquery/meta.yaml b/recipes/bioconductor-geoquery/meta.yaml
index 9282be967f594..d4246ec8b5641 100644
--- a/recipes/bioconductor-geoquery/meta.yaml
+++ b/recipes/bioconductor-geoquery/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.68.0" %}
+{% set version = "2.70.0" %}
 {% set name = "GEOquery" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 006c81971e10ad7dd94c875daa8a75af
+  md5: 5e8f233065ccb97c7cbb231479c936a0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-geoquery", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocGenerics, testthat, covr, markdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-curl
     - r-data.table
@@ -33,8 +34,8 @@ requirements:
     - r-tidyr
     - r-xml2
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-curl
     - r-data.table
@@ -61,4 +62,3 @@ extra:
     name: bioconductor-geoquery
     path: recipes/bioconductor-geoquery
     version: 2.48.0
-
diff --git a/recipes/bioconductor-geosubmission/meta.yaml b/recipes/bioconductor-geosubmission/meta.yaml
index b008d3688fa72..171c6416978eb 100644
--- a/recipes/bioconductor-geosubmission/meta.yaml
+++ b/recipes/bioconductor-geosubmission/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.52.0" %}
+{% set version = "1.54.0" %}
 {% set name = "GEOsubmission" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 975c8bb07e646358a15315cdaf9665de
+  md5: 835a74433a1f0235676bf2d1012096af
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-geosubmission", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-geotcgadata/meta.yaml b/recipes/bioconductor-geotcgadata/meta.yaml
index 0571cea50acf6..4cba7f0dfdbe6 100644
--- a/recipes/bioconductor-geotcgadata/meta.yaml
+++ b/recipes/bioconductor-geotcgadata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.0.0" %}
+{% set version = "2.2.0" %}
 {% set name = "GeoTcgaData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 463ef0f64e092337495a3f6da55b224a
+  md5: 653a353d37b0bcfbd892dfe12d420100
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-geotcgadata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, DESeq2, S4Vectors, ChAMP, impute, tidyr, clusterProfiler, org.Hs.eg.db, edgeR, limma, quantreg, minfi, IlluminaHumanMethylation450kanno.ilmn12.hg19, dearseq, NOISeq, testthat (>= 3.0.0), CATT, TCGAbiolinks, enrichplot, GEOquery, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-cqn >=1.46.0,<1.47.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-topconfects >=1.16.0,<1.17.0'
+    - 'bioconductor-cqn >=1.48.0,<1.49.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-topconfects >=1.18.0,<1.19.0'
     - r-base
     - r-data.table
     - r-plyr
   run:
-    - 'bioconductor-cqn >=1.46.0,<1.47.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-topconfects >=1.16.0,<1.17.0'
+    - 'bioconductor-cqn >=1.48.0,<1.49.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-topconfects >=1.18.0,<1.19.0'
     - r-base
     - r-data.table
     - r-plyr
diff --git a/recipes/bioconductor-gep2pep/meta.yaml b/recipes/bioconductor-gep2pep/meta.yaml
index d975a9a963484..8250b9d598084 100644
--- a/recipes/bioconductor-gep2pep/meta.yaml
+++ b/recipes/bioconductor-gep2pep/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "gep2pep" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 98994b580cde9a2d9431af735cf8c60c
+  md5: 0a8f1b44003eba297c44f8115f870df0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gep2pep", max_pin="x.x") }}'
   noarch: generic
 # Suggests: WriteXLS, testthat, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
     - r-base
     - r-digest
     - r-foreach
@@ -31,9 +32,9 @@ requirements:
     - 'r-repo >=2.1.1'
     - r-xml
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
     - r-base
     - r-digest
     - r-foreach
diff --git a/recipes/bioconductor-gesper/meta.yaml b/recipes/bioconductor-gesper/meta.yaml
index 5604170a7054e..083aafb62aa77 100644
--- a/recipes/bioconductor-gesper/meta.yaml
+++ b/recipes/bioconductor-gesper/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.31.0" %}
+{% set version = "1.34.0" %}
 {% set name = "gespeR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 71dc46d44b385b5443c76ae92caa659e
+  md5: b29c5440e5f853e993e3ca2df2eae3e6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gesper", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-cellhts2 >=2.64.0,<2.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-cellhts2 >=2.66.0,<2.67.0'
     - r-base
     - r-doparallel
     - r-dplyr
@@ -33,9 +34,9 @@ requirements:
     - r-matrix
     - r-reshape2
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-cellhts2 >=2.64.0,<2.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-cellhts2 >=2.66.0,<2.67.0'
     - r-base
     - r-doparallel
     - r-dplyr
diff --git a/recipes/bioconductor-getdee2/meta.yaml b/recipes/bioconductor-getdee2/meta.yaml
index cae189ec65783..1ff51ddaf967c 100644
--- a/recipes/bioconductor-getdee2/meta.yaml
+++ b/recipes/bioconductor-getdee2/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "getDEE2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0afa472875b2b4ab0fa9805c79faa93e
+  md5: 5bae73105adbd3fba6517601379594c0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-getdee2", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, rmarkdown
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-htm2txt
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-htm2txt
 test:
diff --git a/recipes/bioconductor-geuvadistranscriptexpr/meta.yaml b/recipes/bioconductor-geuvadistranscriptexpr/meta.yaml
index c17135a0cf002..6cda616d59429 100644
--- a/recipes/bioconductor-geuvadistranscriptexpr/meta.yaml
+++ b/recipes/bioconductor-geuvadistranscriptexpr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "GeuvadisTranscriptExpr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5a37aba63d441f86e2b9eb68f34b92f0
+  md5: 806de22bef0659a3b6f9db122d87a1d6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-geuvadistranscriptexpr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: limma, rtracklayer, GenomicRanges, Rsamtools, VariantAnnotation, tools, BiocStyle, knitr, testthat
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-geuvadistranscriptexpr/post-link.sh b/recipes/bioconductor-geuvadistranscriptexpr/post-link.sh
index f79467042f5fd..4723d360c3b55 100644
--- a/recipes/bioconductor-geuvadistranscriptexpr/post-link.sh
+++ b/recipes/bioconductor-geuvadistranscriptexpr/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "geuvadistranscriptexpr-1.28.0"
+installBiocDataPackage.sh "geuvadistranscriptexpr-1.30.0"
diff --git a/recipes/bioconductor-geva/meta.yaml b/recipes/bioconductor-geva/meta.yaml
index ff15ffe94bb29..05f850b06b2ec 100644
--- a/recipes/bioconductor-geva/meta.yaml
+++ b/recipes/bioconductor-geva/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "geva" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: aa42438cd413c4834920527e263b2549
+  md5: ac06c7a9df29f5eb16fe102c81369ccb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-geva", max_pin="x.x") }}'
   noarch: generic
 # Suggests: devtools, knitr, rmarkdown, roxygen2, limma, topGO, testthat (>= 3.0.0)
 requirements:
diff --git a/recipes/bioconductor-gewist/meta.yaml b/recipes/bioconductor-gewist/meta.yaml
index ae8837dbd5e53..5e0d3c2bb02e2 100644
--- a/recipes/bioconductor-gewist/meta.yaml
+++ b/recipes/bioconductor-gewist/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.44.0" %}
+{% set version = "1.46.0" %}
 {% set name = "GEWIST" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ed8e6e450912a74621c1138d8e93d1b1
+  md5: 3fe24d9c2f80cfc18dc41b37b118be6e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gewist", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-gg4way/build.sh b/recipes/bioconductor-gg4way/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-gg4way/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-gg4way/meta.yaml b/recipes/bioconductor-gg4way/meta.yaml
new file mode 100644
index 0000000000000..835f32f2578c0
--- /dev/null
+++ b/recipes/bioconductor-gg4way/meta.yaml
@@ -0,0 +1,67 @@
+{% set version = "1.0.0" %}
+{% set name = "gg4way" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
+  md5: 500552b8ab9c3fc5cc58fcf56378a928
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gg4way", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: airway, BiocStyle, knitr, org.Hs.eg.db, rmarkdown, testthat
+requirements:
+  host:
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - r-base
+    - r-dplyr
+    - r-ggplot2
+    - r-ggrepel
+    - r-glue
+    - r-janitor
+    - r-magrittr
+    - r-purrr
+    - r-rlang
+    - r-scales
+    - r-stringr
+    - r-tibble
+    - r-tidyr
+  run:
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - r-base
+    - r-dplyr
+    - r-ggplot2
+    - r-ggrepel
+    - r-glue
+    - r-janitor
+    - r-magrittr
+    - r-purrr
+    - r-rlang
+    - r-scales
+    - r-stringr
+    - r-tibble
+    - r-tidyr
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'MIT + file LICENSE'
+  summary: '4way Plots of Differential Expression'
+  description: '4way plots enable a comparison of the logFC values from two contrasts of differential gene expression. The gg4way package creates 4way plots using the ggplot2 framework and supports popular Bioconductor objects. The package also provides information about the correlation between contrasts and significant genes of interest.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-ggbio/meta.yaml b/recipes/bioconductor-ggbio/meta.yaml
index 006af33b86405..2ae0c837632c1 100644
--- a/recipes/bioconductor-ggbio/meta.yaml
+++ b/recipes/bioconductor-ggbio/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "ggbio" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 7251a7fc9affae5f6ab3ea60c2446ecf
+  md5: de7ec73480f41c35fca2a8a758fbc7d0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ggbio", max_pin="x.x") }}'
   noarch: generic
 # Suggests: vsn, BSgenome.Hsapiens.UCSC.hg19, Homo.sapiens, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Mmusculus.UCSC.mm9.knownGene, knitr, BiocStyle, testthat, EnsDb.Hsapiens.v75, tinytex
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-biovizbase >=1.48.0,<1.49.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-organismdbi >=1.42.0,<1.43.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-biovizbase >=1.50.0,<1.51.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-organismdbi >=1.44.0,<1.45.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-ggally
     - 'r-ggplot2 >=1.0.0'
@@ -50,25 +51,25 @@ requirements:
     - r-rlang
     - r-scales
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-biovizbase >=1.48.0,<1.49.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-organismdbi >=1.42.0,<1.43.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-biovizbase >=1.50.0,<1.51.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-organismdbi >=1.44.0,<1.45.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-ggally
     - 'r-ggplot2 >=1.0.0'
diff --git a/recipes/bioconductor-ggcyto/meta.yaml b/recipes/bioconductor-ggcyto/meta.yaml
index 910a8c1868c48..996e3aeda5742 100644
--- a/recipes/bioconductor-ggcyto/meta.yaml
+++ b/recipes/bioconductor-ggcyto/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "ggcyto" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: e01a55fb67a3cb3881d74e693049486b
+  md5: f50828f54e40b73d30aa3ac0ef06de21
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ggcyto", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, flowWorkspaceData, knitr, rmarkdown, flowStats, openCyto, flowViz, ggridges, vdiffr
 requirements:
   host:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowworkspace >=4.12.0,<4.13.0'
-    - 'bioconductor-ncdfflow >=2.46.0,<2.47.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowworkspace >=4.14.0,<4.15.0'
+    - 'bioconductor-ncdfflow >=2.48.0,<2.49.0'
     - r-base
     - r-data.table
-    - 'r-ggplot2 >=3.3.0'
+    - 'r-ggplot2 >=3.4.2'
     - r-gridextra
     - r-hexbin
     - r-plyr
@@ -34,12 +35,12 @@ requirements:
     - r-rlang
     - r-scales
   run:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowworkspace >=4.12.0,<4.13.0'
-    - 'bioconductor-ncdfflow >=2.46.0,<2.47.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowworkspace >=4.14.0,<4.15.0'
+    - 'bioconductor-ncdfflow >=2.48.0,<2.49.0'
     - r-base
     - r-data.table
-    - 'r-ggplot2 >=3.3.0'
+    - 'r-ggplot2 >=3.4.2'
     - r-gridextra
     - r-hexbin
     - r-plyr
diff --git a/recipes/bioconductor-gghumanmethcancerpanelv1.db/meta.yaml b/recipes/bioconductor-gghumanmethcancerpanelv1.db/meta.yaml
index 2ba9f67beb951..4bb5bc685c883 100644
--- a/recipes/bioconductor-gghumanmethcancerpanelv1.db/meta.yaml
+++ b/recipes/bioconductor-gghumanmethcancerpanelv1.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.1" %}
 {% set name = "GGHumanMethCancerPanelv1.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,25 +13,26 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: e8f4a37182b175fb33dd54f8093e6f52
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gghumanmethcancerpanelv1.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationforge >=1.42.0,<1.43.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationforge >=1.44.0,<1.45.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationforge >=1.42.0,<1.43.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationforge >=1.44.0,<1.45.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ggkegg/build.sh b/recipes/bioconductor-ggkegg/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-ggkegg/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-ggkegg/meta.yaml b/recipes/bioconductor-ggkegg/meta.yaml
new file mode 100644
index 0000000000000..613b9acdc3d6a
--- /dev/null
+++ b/recipes/bioconductor-ggkegg/meta.yaml
@@ -0,0 +1,71 @@
+{% set version = "1.0.2" %}
+{% set name = "ggkegg" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
+  md5: 747219ce420df145e10ee4b9243b17dc
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ggkegg", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: knitr, clusterProfiler, bnlearn, rmarkdown, BiocStyle, testthat (>= 3.0.0)
+requirements:
+  host:
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - r-base
+    - r-cairo
+    - r-data.table
+    - r-dplyr
+    - r-getoptlong
+    - r-ggplot2
+    - r-ggraph
+    - r-igraph
+    - r-magick
+    - r-patchwork
+    - r-shadowtext
+    - r-stringr
+    - r-tibble
+    - r-tidygraph
+    - r-xml
+  run:
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - r-base
+    - r-cairo
+    - r-data.table
+    - r-dplyr
+    - r-getoptlong
+    - r-ggplot2
+    - r-ggraph
+    - r-igraph
+    - r-magick
+    - r-patchwork
+    - r-shadowtext
+    - r-stringr
+    - r-tibble
+    - r-tidygraph
+    - r-xml
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'MIT + file LICENSE'
+  summary: 'KEGG pathway visualization by ggplot2'
+  description: 'This package aims to import, parse, and analyze KEGG data such as KEGG PATHWAY and KEGG MODULE. The package supports visualizing KEGG information using ggplot2 and ggraph through using the grammar of graphics. The package enables the direct visualization of the results from various omics analysis packages.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-ggmanh/meta.yaml b/recipes/bioconductor-ggmanh/meta.yaml
index 392707f7f661c..ab0bfd97963ec 100644
--- a/recipes/bioconductor-ggmanh/meta.yaml
+++ b/recipes/bioconductor-ggmanh/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "ggmanh" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d083b7129acff669ad41db946445336b
+  md5: dbbd8130e9ef70cb69c7e305af0c37d7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ggmanh", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, rmarkdown, knitr, testthat (>= 3.0.0), markdown, GenomicRanges
 requirements:
   host:
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-seqarray >=1.40.0,<1.41.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-seqarray >=1.42.0,<1.43.0'
     - r-base
     - r-ggplot2
     - r-ggrepel
@@ -30,8 +31,8 @@ requirements:
     - r-rlang
     - r-scales
   run:
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-seqarray >=1.40.0,<1.41.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-seqarray >=1.42.0,<1.43.0'
     - r-base
     - r-ggplot2
     - r-ggrepel
diff --git a/recipes/bioconductor-ggmsa/meta.yaml b/recipes/bioconductor-ggmsa/meta.yaml
index b45906c0af140..1ca7bf62799d6 100644
--- a/recipes/bioconductor-ggmsa/meta.yaml
+++ b/recipes/bioconductor-ggmsa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "ggmsa" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 36c37e2d2e1f35d872621c6ff05af71a
+  md5: 1faea3aedc093bb7e151208c9a11b60c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ggmsa", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ggtreeExtra, ape, cowplot, knitr, BiocStyle, rmarkdown, readxl, ggnewscale, kableExtra, gggenes, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
-    - 'bioconductor-r4rna >=1.28.0,<1.29.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
+    - 'bioconductor-r4rna >=1.30.0,<1.31.0'
     - r-aplot
     - r-base
     - r-dplyr
@@ -36,9 +37,9 @@ requirements:
     - r-statebins
     - r-tidyr
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
-    - 'bioconductor-r4rna >=1.28.0,<1.29.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
+    - 'bioconductor-r4rna >=1.30.0,<1.31.0'
     - r-aplot
     - r-base
     - r-dplyr
diff --git a/recipes/bioconductor-ggpa/meta.yaml b/recipes/bioconductor-ggpa/meta.yaml
index 5d4544485bfb5..5d4865bce21db 100644
--- a/recipes/bioconductor-ggpa/meta.yaml
+++ b/recipes/bioconductor-ggpa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.1" %}
+{% set version = "1.14.0" %}
 {% set name = "GGPA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a7d4034056bfd00a317aa0c6030422c9
+  md5: 5c50ef4040a18ac94848d7c42484d28d
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ggpa", max_pin="x.x") }}'
 # Suggests: BiocStyle
 # SystemRequirements: GNU make
 requirements:
diff --git a/recipes/bioconductor-ggsc/build.sh b/recipes/bioconductor-ggsc/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-ggsc/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-ggsc/meta.yaml b/recipes/bioconductor-ggsc/meta.yaml
new file mode 100644
index 0000000000000..1441cbbb7e759
--- /dev/null
+++ b/recipes/bioconductor-ggsc/meta.yaml
@@ -0,0 +1,71 @@
+{% set version = "1.0.2" %}
+{% set name = "ggsc" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
+  md5: 4c0a1656e9943cadf436244c65b18242
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ggsc", max_pin="x.x") }}'
+# Suggests: aplot, BiocParallel, forcats, ggforce, ggnewscale, igraph, knitr, ks, Matrix, prettydoc, rmarkdown, scran, scater, scuttle, shadowtext, sf, SeuratObject, SpatialExperiment, STexampleData, testthat (>= 3.0.0)
+requirements:
+  host:
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-cli
+    - r-dplyr
+    - r-ggplot2
+    - r-rcpp
+    - r-rcpparmadillo
+    - r-rcppparallel
+    - r-rlang
+    - r-scattermore
+    - r-seurat
+    - r-tibble
+    - r-tidydr
+    - r-tidyr
+    - r-yulab.utils
+    - libblas
+    - liblapack
+  run:
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-cli
+    - r-dplyr
+    - r-ggplot2
+    - r-rcpp
+    - r-rcpparmadillo
+    - r-rcppparallel
+    - r-rlang
+    - r-scattermore
+    - r-seurat
+    - r-tibble
+    - r-tidydr
+    - r-tidyr
+    - r-yulab.utils
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - make
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'Visualizing Single Cell Data'
+  description: 'Useful functions to visualize single cell and spatial data. It supports both ''SingleCellExperiment'' and ''Seurat'' objects. It also supports visualizing the data using grammar of graphics implemented in ''ggplot2''.'
+
diff --git a/recipes/bioconductor-ggspavis/meta.yaml b/recipes/bioconductor-ggspavis/meta.yaml
index a28c488446c59..eabd7d3e68766 100644
--- a/recipes/bioconductor-ggspavis/meta.yaml
+++ b/recipes/bioconductor-ggspavis/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "ggspavis" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 94461bb1f26364b8f20a37ab49e8a4db
+  md5: c79337783dc059e449506a61c5579337
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ggspavis", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, rmarkdown, knitr, STexampleData, BumpyMatrix, scater, scran, uwot, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-ggside
   run:
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-ggside
diff --git a/recipes/bioconductor-ggtree/meta.yaml b/recipes/bioconductor-ggtree/meta.yaml
index 498ac6b1d2938..2a7d2de5144dc 100644
--- a/recipes/bioconductor-ggtree/meta.yaml
+++ b/recipes/bioconductor-ggtree/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.8.0" %}
+{% set version = "3.10.0" %}
 {% set name = "ggtree" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: efdbe433dc0a88c5582b0f69a0577865
+  md5: 7e1894ce01245d811286b0ce1fbe8266
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ggtree", max_pin="x.x") }}'
   noarch: generic
 # Suggests: emojifont, ggimage, ggplotify, shadowtext, grDevices, knitr, prettydoc, rmarkdown, testthat, tibble, glue
 requirements:
   host:
-    - 'bioconductor-treeio >=1.24.0,<1.25.0'
+    - 'bioconductor-treeio >=1.26.0,<1.27.0'
     - r-ape
     - r-aplot
     - r-base
@@ -34,10 +35,10 @@ requirements:
     - r-rlang
     - r-scales
     - r-tidyr
-    - 'r-tidytree >=0.3.9'
+    - 'r-tidytree >=0.4.5'
     - r-yulab.utils
   run:
-    - 'bioconductor-treeio >=1.24.0,<1.25.0'
+    - 'bioconductor-treeio >=1.26.0,<1.27.0'
     - r-ape
     - r-aplot
     - r-base
@@ -50,7 +51,7 @@ requirements:
     - r-rlang
     - r-scales
     - r-tidyr
-    - 'r-tidytree >=0.3.9'
+    - 'r-tidytree >=0.4.5'
     - r-yulab.utils
 test:
   commands:
diff --git a/recipes/bioconductor-ggtreedendro/meta.yaml b/recipes/bioconductor-ggtreedendro/meta.yaml
index 7291d3ea96fcc..262bc36ce9821 100644
--- a/recipes/bioconductor-ggtreedendro/meta.yaml
+++ b/recipes/bioconductor-ggtreedendro/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "ggtreeDendro" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 426abd017dfad28e2752ee6943d1f345
+  md5: e5839d466e08665eb2475a99fb74e833
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ggtreedendro", max_pin="x.x") }}'
   noarch: generic
 # Suggests: aplot, cluster, knitr, MASS, mdendro, prettydoc, pvclust, rmarkdown, testthat (>= 3.0.0), treeio, yulab.utils
 requirements:
   host:
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
     - r-base
     - r-ggplot2
     - r-tidytree
   run:
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
     - r-base
     - r-ggplot2
     - r-tidytree
diff --git a/recipes/bioconductor-ggtreeextra/meta.yaml b/recipes/bioconductor-ggtreeextra/meta.yaml
index e16219e3ef5e3..43bbe1f1f6038 100644
--- a/recipes/bioconductor-ggtreeextra/meta.yaml
+++ b/recipes/bioconductor-ggtreeextra/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "ggtreeExtra" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4c39f713cf930c99e6f7106cd96159a8
+  md5: 0bfd8a30c6fbd323763722927d30296a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ggtreeextra", max_pin="x.x") }}'
   noarch: generic
 # Suggests: treeio, ggstar, patchwork, knitr, rmarkdown, prettydoc, markdown, testthat (>= 3.0.0), pillar
 requirements:
   host:
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
     - r-base
     - r-cli
     - r-ggnewscale
@@ -30,7 +31,7 @@ requirements:
     - r-rlang
     - 'r-tidytree >=0.3.9'
   run:
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
     - r-base
     - r-cli
     - r-ggnewscale
diff --git a/recipes/bioconductor-gigsea/meta.yaml b/recipes/bioconductor-gigsea/meta.yaml
index f2495f207ccb8..0e0d6eec70f7b 100644
--- a/recipes/bioconductor-gigsea/meta.yaml
+++ b/recipes/bioconductor-gigsea/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "GIGSEA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e98747c8ff218c3ef2d5590f055c1084
+  md5: 1325b20f84be334e607b7ebec7db0d07
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gigsea", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
diff --git a/recipes/bioconductor-gigseadata/meta.yaml b/recipes/bioconductor-gigseadata/meta.yaml
index caf5e26c0c2d1..6430624693d11 100644
--- a/recipes/bioconductor-gigseadata/meta.yaml
+++ b/recipes/bioconductor-gigseadata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "GIGSEAdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ad905645333890eafd314cdac44f793a
+  md5: 470cdb6073d9af3d23056b55e6b8c98d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gigseadata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GIGSEA, knitr, rmarkdown
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-gigseadata/post-link.sh b/recipes/bioconductor-gigseadata/post-link.sh
index 19ba27f282877..ee46d067c6e87 100644
--- a/recipes/bioconductor-gigseadata/post-link.sh
+++ b/recipes/bioconductor-gigseadata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "gigseadata-1.18.0"
+installBiocDataPackage.sh "gigseadata-1.20.0"
diff --git a/recipes/bioconductor-girafe/meta.yaml b/recipes/bioconductor-girafe/meta.yaml
index ca748fc02114f..4ce52be365f1b 100644
--- a/recipes/bioconductor-girafe/meta.yaml
+++ b/recipes/bioconductor-girafe/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.52.0" %}
+{% set version = "1.54.0" %}
 {% set name = "girafe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 4d95b1c6c1147fd8833e62fbab42973b
+  md5: 4cf228e6d7f73cf97c923f1c349fb6c3
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-girafe", max_pin="x.x") }}'
 # Suggests: MASS, org.Mm.eg.db, RColorBrewer
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeintervals >=1.56.0,<1.57.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeintervals >=1.58.0,<1.59.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - 'r-intervals >=0.13.1'
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeintervals >=1.56.0,<1.57.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeintervals >=1.58.0,<1.59.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - 'r-intervals >=0.13.1'
   build:
@@ -56,6 +57,8 @@ about:
   summary: 'Genome Intervals and Read Alignments for Functional Exploration'
   description: 'The package ''girafe'' deals with the genome-level representation of aligned reads from next-generation sequencing data. It contains an object class for enabling a detailed description of genome intervals with aligned reads and functions for comparing, visualising, exporting and working with such intervals and the aligned reads. As such, the package interacts with and provides a link between the packages ShortRead, IRanges and genomeIntervals.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:girafe
   parent_recipe:
diff --git a/recipes/bioconductor-gispa/meta.yaml b/recipes/bioconductor-gispa/meta.yaml
index 78995642ea117..7e2d4a3f793cc 100644
--- a/recipes/bioconductor-gispa/meta.yaml
+++ b/recipes/bioconductor-gispa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "GISPA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e309fc9a17caf08ad92b993a0cdd90ad
+  md5: 012a529b5359b149705fa54cb75c1818
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gispa", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
     - r-base
     - r-changepoint
     - r-data.table
@@ -33,9 +34,9 @@ requirements:
     - r-plyr
     - r-scatterplot3d
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
     - r-base
     - r-changepoint
     - r-data.table
diff --git a/recipes/bioconductor-glad/build.sh b/recipes/bioconductor-glad/build.sh
index 78ffa6cbcade8..c74d5641a31dc 100644
--- a/recipes/bioconductor-glad/build.sh
+++ b/recipes/bioconductor-glad/build.sh
@@ -8,5 +8,5 @@ CXX=$CXX
 CXX98=$CXX
 CXX11=$CXX
 CXX14=$CXX" > ~/.R/Makevars
-touch GLAD
-$R CMD INSTALL --build .
+sed -i.bak 's/^ac_unique_file="GLAD"/ac_unique_file="NAMESPACE"/' configure
+$R CMD INSTALL --build --configure-vars='GSL_LIBS="-L$PREFIX/lib -lgsl -lgslcblas -lm"' .
\ No newline at end of file
diff --git a/recipes/bioconductor-glad/meta.yaml b/recipes/bioconductor-glad/meta.yaml
index 28765c4e9b1b2..98a43342fbfd0 100644
--- a/recipes/bioconductor-glad/meta.yaml
+++ b/recipes/bioconductor-glad/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.64.0" %}
+{% set version = "2.66.0" %}
 {% set name = "GLAD" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a0dc76c1fc2b069084b16a9150611ba6
+  md5: f222e07624fb8b1c4780a4960b0f2008
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-glad", max_pin="x.x") }}'
 # SystemRequirements: gsl. Note: users should have GSL installed. Windows users: 'consult the README file available in the inst directory of the source distribution for necessary configuration instructions'.
 requirements:
   host:
diff --git a/recipes/bioconductor-gladiatox/meta.yaml b/recipes/bioconductor-gladiatox/meta.yaml
index 5290df2495cf9..75bf22493ac9e 100644
--- a/recipes/bioconductor-gladiatox/meta.yaml
+++ b/recipes/bioconductor-gladiatox/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "GladiaTOX" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6b642344445e36310ab07ddd46285a9a
+  md5: a8affcce15bf1f5e9d03220e0de3fbe9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gladiatox", max_pin="x.x") }}'
   noarch: generic
 # Suggests: roxygen2, knitr, rmarkdown, testthat, BiocStyle
 requirements:
@@ -31,7 +32,7 @@ requirements:
     - r-rcolorbrewer
     - r-rcurl
     - r-rjsonio
-    - r-rmysql
+    - r-rmariadb
     - r-rsqlite
     - r-stringr
     - r-tidyr
@@ -48,7 +49,7 @@ requirements:
     - r-rcolorbrewer
     - r-rcurl
     - r-rjsonio
-    - r-rmysql
+    - r-rmariadb
     - r-rsqlite
     - r-stringr
     - r-tidyr
diff --git a/recipes/bioconductor-glimma/meta.yaml b/recipes/bioconductor-glimma/meta.yaml
index 7d696aad81cf4..32dc9bba1cbf7 100644
--- a/recipes/bioconductor-glimma/meta.yaml
+++ b/recipes/bioconductor-glimma/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.10.0" %}
+{% set version = "2.12.0" %}
 {% set name = "Glimma" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f127e3ae006335a13734d71ef7aa2640
+  md5: bea9aeee00dca519586661d33ba8dc74
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-glimma", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, BiocStyle, IRanges, GenomicRanges, pryr, AnnotationHub, scRNAseq, scater, scran
 requirements:
   host:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-htmlwidgets
     - r-jsonlite
   run:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-htmlwidgets
     - r-jsonlite
@@ -44,8 +45,8 @@ test:
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: GPL-3
-  summary: 'Interactive HTML graphics'
-  description: 'This package generates interactive visualisations for analysis of RNA-sequencing data using output from limma, edgeR or DESeq2 packages in an HTML page. The interactions are built on top of the popular static representations of analysis results in order to provide additional information.'
+  summary: 'Interactive visualizations for gene expression analysis'
+  description: 'This package produces interactive visualizations for RNA-seq data analysis, utilizing output from limma, edgeR, or DESeq2. It produces interactive htmlwidgets versions of popular RNA-seq analysis plots to enhance the exploration of analysis results by overlaying interactive features. The plots can be viewed in a web browser or embedded in notebook documents.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
   identifiers:
diff --git a/recipes/bioconductor-glmgampoi/meta.yaml b/recipes/bioconductor-glmgampoi/meta.yaml
index d38b42353b0f4..68d5da5ce2f73 100644
--- a/recipes/bioconductor-glmgampoi/meta.yaml
+++ b/recipes/bioconductor-glmgampoi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.2" %}
+{% set version = "1.14.0" %}
 {% set name = "glmGamPoi" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 299c9cff01d7696e4e6cb23db4c12920
+  md5: ff74c3d78a7edc7d0a5f4521f7c5b9b1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-glmgampoi", max_pin="x.x") }}'
 # Suggests: testthat (>= 2.1.0), zoo, DESeq2, edgeR, limma, beachmat, MASS, statmod, ggplot2, bench, BiocParallel, knitr, rmarkdown, BiocStyle, TENxPBMCData, muscData, scran, Matrix, dplyr
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-beachmat >=2.16.0,<2.17.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrixstats
     - r-rcpp
@@ -38,14 +39,14 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-beachmat >=2.16.0,<2.17.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrixstats
     - r-rcpp
diff --git a/recipes/bioconductor-glmsparsenet/meta.yaml b/recipes/bioconductor-glmsparsenet/meta.yaml
index 039338c617606..b0bfedfe3022a 100644
--- a/recipes/bioconductor-glmsparsenet/meta.yaml
+++ b/recipes/bioconductor-glmsparsenet/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "glmSparseNet" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 19e521eeaadf8bbfeda74bdb69d0297c
+  md5: b029a96bf3a653a8a3c24d764c841512
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-glmsparsenet", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, survival, survcomp, pROC, VennDiagram, BiocStyle, curatedTCGAData, TCGAutils
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-digest
     - r-dplyr
@@ -40,9 +41,9 @@ requirements:
     - r-stringr
     - r-survminer
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-digest
     - r-dplyr
diff --git a/recipes/bioconductor-globalancova/meta.yaml b/recipes/bioconductor-globalancova/meta.yaml
index 60d2696f5ca30..84aa7d322bd84 100644
--- a/recipes/bioconductor-globalancova/meta.yaml
+++ b/recipes/bioconductor-globalancova/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "4.18.0" %}
+{% set version = "4.20.0" %}
 {% set name = "GlobalAncova" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6236d46ff193ab24e7ab0d85272b0ca3
+  md5: 4fcc19ebc2bba1f610912cde1745b549
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-globalancova", max_pin="x.x") }}'
 # Suggests: GO.db, golubEsets, hu6800.db, vsn, Rgraphviz
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-globaltest >=5.54.0,<5.55.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-globaltest >=5.56.0,<5.57.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
     - r-base
     - r-corpcor
     - r-dendextend
@@ -32,11 +33,11 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-globaltest >=5.54.0,<5.55.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-globaltest >=5.56.0,<5.57.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
     - r-base
     - r-corpcor
     - r-dendextend
diff --git a/recipes/bioconductor-globalseq/meta.yaml b/recipes/bioconductor-globalseq/meta.yaml
index f6cc742c6512c..0d5af193580c1 100644
--- a/recipes/bioconductor-globalseq/meta.yaml
+++ b/recipes/bioconductor-globalseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "globalSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f1df637d4f75b814a55fc9025ea33769
+  md5: 1b427214cf1345b8d75ba69dc02adb77
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-globalseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, SummarizedExperiment, S4Vectors
 requirements:
diff --git a/recipes/bioconductor-globaltest/meta.yaml b/recipes/bioconductor-globaltest/meta.yaml
index 7b419c131f313..7cd5098ec0714 100644
--- a/recipes/bioconductor-globaltest/meta.yaml
+++ b/recipes/bioconductor-globaltest/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "5.54.0" %}
+{% set version = "5.56.0" %}
 {% set name = "globaltest" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 0dee254d67879077ccb02fbe682eaed6
+  md5: ca389a7105fc08bc6172ce755d842a31
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-globaltest", max_pin="x.x") }}'
   noarch: generic
 # Suggests: vsn, golubEsets, KEGGREST, hu6800.db, Rgraphviz, GO.db, lungExpression, org.Hs.eg.db, GSEABase, penalized, gss, MASS, boot, rpart, mstate
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-survival
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-survival
 test:
diff --git a/recipes/bioconductor-gloscope/build.sh b/recipes/bioconductor-gloscope/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-gloscope/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-gloscope/meta.yaml b/recipes/bioconductor-gloscope/meta.yaml
new file mode 100644
index 0000000000000..c2c78a32218ab
--- /dev/null
+++ b/recipes/bioconductor-gloscope/meta.yaml
@@ -0,0 +1,54 @@
+{% set version = "1.0.0" %}
+{% set name = "GloScope" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 00ab18ecdd0a5768690b841f2f2448e5
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gloscope", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, testthat (>= 3.0.0), knitr, rmarkdown, zellkonverter
+requirements:
+  host:
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - r-base
+    - r-fnn
+    - r-ggplot2
+    - r-mass
+    - r-mclust
+    - r-mvnfast
+    - r-rann
+    - r-rlang
+  run:
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - r-base
+    - r-fnn
+    - r-ggplot2
+    - r-mass
+    - r-mclust
+    - r-mvnfast
+    - r-rann
+    - r-rlang
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'Population-level Representation on scRNA-Seq data'
+  description: 'This package aims at representing and summarizing the entire single-cell profile of a sample. It allows researchers to perform important bioinformatic analyses at the sample-level such as visualization and quality control. The main functions Estimate sample distribution and calculate statistical divergence among samples, and visualize the distance matrix through MDS plots.'
+
diff --git a/recipes/bioconductor-gmapr/build.sh b/recipes/bioconductor-gmapr/build.sh
index aa6ce291ac3aa..3c9546c924fe5 100644
--- a/recipes/bioconductor-gmapr/build.sh
+++ b/recipes/bioconductor-gmapr/build.sh
@@ -10,4 +10,4 @@ CXX11=$CXX
 CXX14=$CXX" > ~/.R/Makevars
 # Remove object files (if present) that should not be in the source tarball
 rm -f src/samtools/*.[oa]
-$R CMD INSTALL --build .
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-gmapr/meta.yaml b/recipes/bioconductor-gmapr/meta.yaml
index 862fc6f100cdd..45159a2ac666f 100644
--- a/recipes/bioconductor-gmapr/meta.yaml
+++ b/recipes/bioconductor-gmapr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "gmapR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,47 +11,48 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: dbe4da38f2fda8cbcef73cae97c1ee28
+  md5: 3398b4dd3f0c05c2a748f9ecb0a28c41
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gmapr", max_pin="x.x") }}'
 # Suggests: RUnit, BSgenome.Dmelanogaster.UCSC.dm3, BSgenome.Scerevisiae.UCSC.sacCer3, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome.Hsapiens.UCSC.hg19, LungCancerLines
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-gmicr/meta.yaml b/recipes/bioconductor-gmicr/meta.yaml
index d7eb8e039cc91..9e030aeb49653 100644
--- a/recipes/bioconductor-gmicr/meta.yaml
+++ b/recipes/bioconductor-gmicr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "GmicR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e089a259f66dcf368cf5bb49c102e1ea
+  md5: 13466f8e105c84116d73b39d38eed3cd
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gmicr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-category >=2.66.0,<2.67.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-category >=2.68.0,<2.69.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-ape
     - r-base
     - r-bnlearn
@@ -40,12 +41,12 @@ requirements:
     - r-shiny
     - r-wgcna
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-category >=2.66.0,<2.67.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-category >=2.68.0,<2.69.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-ape
     - r-base
     - r-bnlearn
diff --git a/recipes/bioconductor-gmoviz/meta.yaml b/recipes/bioconductor-gmoviz/meta.yaml
index 22c92bf2ca7e9..1a7e6dd17007e 100644
--- a/recipes/bioconductor-gmoviz/meta.yaml
+++ b/recipes/bioconductor-gmoviz/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "gmoviz" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,44 +11,45 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c48c8c41b980373fa3c764e4834ff8e3
+  md5: 19164c63f0edf9ae927bef7bae0b1a12
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gmoviz", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, pasillaBamSubset, BiocStyle, BiocManager
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-circlize
     - r-colorspace
     - r-gridbase
     - r-pracma
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-circlize
     - r-colorspace
diff --git a/recipes/bioconductor-gmrp/meta.yaml b/recipes/bioconductor-gmrp/meta.yaml
index d320ffafc1366..b548aa45a5dea 100644
--- a/recipes/bioconductor-gmrp/meta.yaml
+++ b/recipes/bioconductor-gmrp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "GMRP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2ee7fe352b10cf36aef04482614d7ac0
+  md5: d33e226ce1134e0f16d4d531fadc7339
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gmrp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-diagram
     - r-plotrix
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-diagram
     - r-plotrix
diff --git a/recipes/bioconductor-gnet2/meta.yaml b/recipes/bioconductor-gnet2/meta.yaml
index 5c0d53071785b..acf7bfe64973c 100644
--- a/recipes/bioconductor-gnet2/meta.yaml
+++ b/recipes/bioconductor-gnet2/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "GNET2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,16 +11,17 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3764cd241d02bfc2308facf2cfdb800d
+  md5: 06382e36858e9d55d44aabba748d49b8
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gnet2", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-diagrammer
     - r-dplyr
@@ -33,7 +34,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-diagrammer
     - r-dplyr
@@ -56,3 +57,8 @@ about:
   summary: 'Constructing gene regulatory networks from expression data through functional module inference'
   description: 'Cluster genes to functional groups with E-M process. Iteratively perform TF assigning and Gene assigning, until the assignment of genes did not change, or max number of iterations is reached.'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
diff --git a/recipes/bioconductor-gnosis/build.sh b/recipes/bioconductor-gnosis/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-gnosis/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-gnosis/meta.yaml b/recipes/bioconductor-gnosis/meta.yaml
new file mode 100644
index 0000000000000..ed68757eb4d4d
--- /dev/null
+++ b/recipes/bioconductor-gnosis/meta.yaml
@@ -0,0 +1,91 @@
+{% set version = "1.0.0" %}
+{% set name = "GNOSIS" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: e3cbf07a76da1ae0aa6e669bad2cb778
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gnosis", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, knitr, rmarkdown
+requirements:
+  host:
+    - 'bioconductor-cbioportaldata >=2.14.0,<2.15.0'
+    - 'bioconductor-maftools >=2.18.0,<2.19.0'
+    - r-base
+    - r-car
+    - r-comparegroups
+    - r-dashboardthemes
+    - r-desctools
+    - r-dt
+    - r-fabricatr
+    - r-fontawesome
+    - r-magrittr
+    - r-operator.tools
+    - r-partykit
+    - r-rcolorbrewer
+    - r-reshape2
+    - r-rpart
+    - r-rstatix
+    - r-shiny
+    - r-shinycssloaders
+    - r-shinydashboard
+    - r-shinydashboardplus
+    - r-shinyjs
+    - r-shinylogs
+    - r-shinymeta
+    - r-shinywidgets
+    - r-survival
+    - r-survminer
+    - r-tidyverse
+  run:
+    - 'bioconductor-cbioportaldata >=2.14.0,<2.15.0'
+    - 'bioconductor-maftools >=2.18.0,<2.19.0'
+    - r-base
+    - r-car
+    - r-comparegroups
+    - r-dashboardthemes
+    - r-desctools
+    - r-dt
+    - r-fabricatr
+    - r-fontawesome
+    - r-magrittr
+    - r-operator.tools
+    - r-partykit
+    - r-rcolorbrewer
+    - r-reshape2
+    - r-rpart
+    - r-rstatix
+    - r-shiny
+    - r-shinycssloaders
+    - r-shinydashboard
+    - r-shinydashboardplus
+    - r-shinyjs
+    - r-shinylogs
+    - r-shinymeta
+    - r-shinywidgets
+    - r-survival
+    - r-survminer
+    - r-tidyverse
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'MIT + file LICENSE'
+  summary: 'Genomics explorer using statistical and survival analysis in R'
+  description: 'GNOSIS incorporates a range of R packages enabling users to efficiently explore and visualise clinical and genomic data obtained from cBioPortal. GNOSIS uses an intuitive GUI and multiple tab panels supporting a range of functionalities. These include data upload and initial exploration, data recoding and subsetting, multiple visualisations, survival analysis, statistical analysis and mutation analysis, in addition to facilitating reproducible research.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-go.db/meta.yaml b/recipes/bioconductor-go.db/meta.yaml
index 3742220d4eb29..9311de2ff1dc9 100644
--- a/recipes/bioconductor-go.db/meta.yaml
+++ b/recipes/bioconductor-go.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "GO.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f278f3cb015e04ead1cc3d982a3fd1b3
+  md5: b23522167263afc45a9b115d01632cb1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-go.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-go.db/post-link.sh b/recipes/bioconductor-go.db/post-link.sh
index 1a7bbea2aba0f..f1547533d3cd4 100644
--- a/recipes/bioconductor-go.db/post-link.sh
+++ b/recipes/bioconductor-go.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "go.db-3.17.0"
+installBiocDataPackage.sh "go.db-3.18.0"
diff --git a/recipes/bioconductor-goexpress/meta.yaml b/recipes/bioconductor-goexpress/meta.yaml
index 6bb8170489ffb..2ad3dd05dc553 100644
--- a/recipes/bioconductor-goexpress/meta.yaml
+++ b/recipes/bioconductor-goexpress/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "GOexpress" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5ecb2bcff2560c6f61a1da2407697903
+  md5: b313b2555495c3d3fc5674120b7bb01b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-goexpress", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
     - r-base
     - 'r-ggplot2 >=0.9.0'
     - 'r-gplots >=2.13.0'
@@ -31,8 +32,8 @@ requirements:
     - 'r-rcurl >=1.95'
     - 'r-stringr >=0.6.2'
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
     - r-base
     - 'r-ggplot2 >=0.9.0'
     - 'r-gplots >=2.13.0'
diff --git a/recipes/bioconductor-gofuncr/meta.yaml b/recipes/bioconductor-gofuncr/meta.yaml
index 324860ad1e003..71d2d0bf7bc4f 100644
--- a/recipes/bioconductor-gofuncr/meta.yaml
+++ b/recipes/bioconductor-gofuncr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "GOfuncR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8a81fecf10720e4ce20c7c4648b7fe1d
+  md5: d84c71ebda463871117ea00394d551ce
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gofuncr", max_pin="x.x") }}'
 # Suggests: Homo.sapiens, BiocStyle, knitr, markdown, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - 'r-gtools >=3.5.0'
     - 'r-mapplots >=1.5'
@@ -31,9 +32,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - 'r-gtools >=3.5.0'
     - 'r-mapplots >=1.5'
diff --git a/recipes/bioconductor-golubesets/meta.yaml b/recipes/bioconductor-golubesets/meta.yaml
index 181cf4e04483c..07b2c538aa5a1 100644
--- a/recipes/bioconductor-golubesets/meta.yaml
+++ b/recipes/bioconductor-golubesets/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "golubEsets" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ec7f4855c5a77d3ea3503a1102910a0c
+  md5: 49e3527c00f06c189a048a6b871f3d54
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-golubesets", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-golubesets/post-link.sh b/recipes/bioconductor-golubesets/post-link.sh
index 9a15a0dca0cff..2a6d36332ced8 100644
--- a/recipes/bioconductor-golubesets/post-link.sh
+++ b/recipes/bioconductor-golubesets/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "golubesets-1.42.0"
+installBiocDataPackage.sh "golubesets-1.44.0"
diff --git a/recipes/bioconductor-gopro/meta.yaml b/recipes/bioconductor-gopro/meta.yaml
index 469642baa8eaf..28fc93fb2f3c8 100644
--- a/recipes/bioconductor-gopro/meta.yaml
+++ b/recipes/bioconductor-gopro/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "GOpro" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b0112bd7b59baf1aae2c8bf7f3496600
+  md5: c92dbcab08a7cdac3ee8ee6c28c6dc78
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gopro", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, RTCGA.PANCAN12, BiocStyle, testthat
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-bh
     - r-dendextend
@@ -35,12 +36,12 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-bh
     - r-dendextend
diff --git a/recipes/bioconductor-goprofiles/meta.yaml b/recipes/bioconductor-goprofiles/meta.yaml
index 0d594871e1c39..f8cc90bc58c9f 100644
--- a/recipes/bioconductor-goprofiles/meta.yaml
+++ b/recipes/bioconductor-goprofiles/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.62.0" %}
+{% set version = "1.64.0" %}
 {% set name = "goProfiles" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4da528658f42681fb65e8bc785b39804
+  md5: ff2a664ff7284cf03e9caf932ad86d63
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-goprofiles", max_pin="x.x") }}'
   noarch: generic
 # Suggests: org.Hs.eg.db
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
     - r-base
     - r-compquadform
     - r-stringr
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
     - r-base
     - r-compquadform
     - r-stringr
diff --git a/recipes/bioconductor-gosemsim/meta.yaml b/recipes/bioconductor-gosemsim/meta.yaml
index 028e3acfdbd90..ae4cc675372b4 100644
--- a/recipes/bioconductor-gosemsim/meta.yaml
+++ b/recipes/bioconductor-gosemsim/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.26.0" %}
+{% set version = "2.28.0" %}
 {% set name = "GOSemSim" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8d6dc404ac64c03d0d12f932b2133411
+  md5: ea9c9c6e25cc507a2b5cff51f268d848
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
-# Suggests: AnnotationHub, BiocManager, clusterProfiler, DOSE, knitr, rmarkdown, org.Hs.eg.db, prettydoc, testthat, ROCR
+  run_exports: '{{ pin_subpackage("bioconductor-gosemsim", max_pin="x.x") }}'
+# Suggests: AnnotationHub, BiocManager, clusterProfiler, DOSE, knitr, rmarkdown, org.Hs.eg.db, prettydoc, testthat, tidyr, tidyselect, ROCR
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
     - r-base
     - r-rcpp
+    - r-rlang
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
     - r-base
     - r-rcpp
+    - r-rlang
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
@@ -44,6 +47,8 @@ about:
   summary: 'GO-terms Semantic Similarity Measures'
   description: 'The semantic comparisons of Gene Ontology (GO) annotations provide quantitative ways to compute similarities between genes and gene groups, and have became important basis for many bioinformatics analysis approaches. GOSemSim is an R package for semantic similarity computation among GO terms, sets of GO terms, gene products and gene clusters. GOSemSim implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:gosemsim
   parent_recipe:
diff --git a/recipes/bioconductor-goseq/meta.yaml b/recipes/bioconductor-goseq/meta.yaml
index 3ff69348277b8..ee94c1535f052 100644
--- a/recipes/bioconductor-goseq/meta.yaml
+++ b/recipes/bioconductor-goseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.52.0" %}
+{% set version = "1.54.0" %}
 {% set name = "goseq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 4607e3167133fc26bacc97e215fe0138
+  md5: 4c39d7fbb51594a70dd3e54b1bc10375
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-goseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: edgeR, org.Hs.eg.db, rtracklayer
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genelendatabase >=1.36.0,<1.37.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genelendatabase >=1.38.0,<1.39.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
     - r-base
     - r-biasedurn
     - r-mgcv
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genelendatabase >=1.36.0,<1.37.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genelendatabase >=1.38.0,<1.39.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
     - r-base
     - r-biasedurn
     - r-mgcv
diff --git a/recipes/bioconductor-gosim/meta.yaml b/recipes/bioconductor-gosim/meta.yaml
index a9cfe88fee26d..885c23bd98f98 100644
--- a/recipes/bioconductor-gosim/meta.yaml
+++ b/recipes/bioconductor-gosim/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "GOSim" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 02736c160f8b114ae80c27bd92d14dfc
+  md5: 2fb07a8f5ac4b386b5063f52486bb82b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gosim", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - r-cluster
     - r-corpcor
@@ -35,13 +36,13 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - r-cluster
     - r-corpcor
diff --git a/recipes/bioconductor-gosorensen/meta.yaml b/recipes/bioconductor-gosorensen/meta.yaml
index f882b2d957f27..a6ccadcbdd826 100644
--- a/recipes/bioconductor-gosorensen/meta.yaml
+++ b/recipes/bioconductor-gosorensen/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "goSorensen" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a3711f68b84fabd2730039daa4f81b38
+  md5: 8fa5cc982341291dd857ab340abe4c73
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gosorensen", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-goprofiles >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-goprofiles >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
+    - r-stringr
   run:
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-goprofiles >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-goprofiles >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
+    - r-stringr
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
@@ -39,6 +42,6 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: GPL-3
   summary: 'Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)'
-  description: 'This package implements inferential methods to compare gene lists (in this first release, to prove equivalence) in terms of their biological meaning as expressed in the GO. The compared gene lists are characterized by cross-tabulation frequency tables of enriched GO items. Dissimilarity between gene lists is evaluated using the Sorensen-Dice index. The fundamental guiding principle is that two gene lists are taken as similar if they share a great proportion of common enriched GO items.'
+  description: 'This package implements inferential methods to compare gene lists in terms of their biological meaning as expressed in the GO. The compared gene lists are characterized by cross-tabulation frequency tables of enriched GO items. Dissimilarity between gene lists is evaluated using the Sorensen-Dice index. The fundamental guiding principle is that two gene lists are taken as similar if they share a great proportion of common enriched GO items.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
diff --git a/recipes/bioconductor-gostag/meta.yaml b/recipes/bioconductor-gostag/meta.yaml
index f6e7a62697ff4..4ea3c9b583493 100644
--- a/recipes/bioconductor-gostag/meta.yaml
+++ b/recipes/bioconductor-gostag/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "goSTAG" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7bc12d210ddda0a4b5f5edf28616fab7
+  md5: 8d3245abbcc5813366a9393dc7bf79c7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gostag", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
     - r-base
     - r-memoise
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
     - r-base
     - r-memoise
 test:
diff --git a/recipes/bioconductor-gostats/meta.yaml b/recipes/bioconductor-gostats/meta.yaml
index 5ad536fd0eae2..d2f24d9217bbd 100644
--- a/recipes/bioconductor-gostats/meta.yaml
+++ b/recipes/bioconductor-gostats/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.66.0" %}
+{% set version = "2.68.0" %}
 {% set name = "GOstats" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9f2a76112093c47135db323a273405e2
+  md5: 4489bff9142d2a3357ac2de0efc1b1b4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gostats", max_pin="x.x") }}'
   noarch: generic
 # Suggests: hgu95av2.db (>= 1.13.0), ALL, multtest, genefilter, RColorBrewer, xtable, SparseM, GSEABase, geneplotter, org.Hs.eg.db, RUnit, BiocGenerics, BiocStyle, knitr
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationforge >=1.42.0,<1.43.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-category >=2.66.0,<2.67.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationforge >=1.44.0,<1.45.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-category >=2.68.0,<2.69.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationforge >=1.42.0,<1.43.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-category >=2.66.0,<2.67.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationforge >=1.44.0,<1.45.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-category >=2.68.0,<2.69.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-gosummaries/meta.yaml b/recipes/bioconductor-gosummaries/meta.yaml
index f5121955778cb..6c26068237b8d 100644
--- a/recipes/bioconductor-gosummaries/meta.yaml
+++ b/recipes/bioconductor-gosummaries/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.36.0" %}
+{% set version = "2.37.0" %}
 {% set name = "GOsummaries" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,16 +11,17 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e9b6d1a50cb877d24e9264a02023a79e
+  md5: e31e67ed4c66122dcf79a694096ef539
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gosummaries", max_pin="x.x") }}'
 # Suggests: vegan
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-ggplot2
     - r-gprofiler
@@ -31,7 +32,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-ggplot2
     - r-gprofiler
diff --git a/recipes/bioconductor-gothic/meta.yaml b/recipes/bioconductor-gothic/meta.yaml
index 6779ef8846164..7651748e307e3 100644
--- a/recipes/bioconductor-gothic/meta.yaml
+++ b/recipes/bioconductor-gothic/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "GOTHiC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,41 +11,42 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4f99fd13cc2e02957464e7b60647aeef
+  md5: 4674978396dedfc730c8ad85662dac8c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gothic", max_pin="x.x") }}'
   noarch: generic
 # Suggests: HiCDataLymphoblast
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - r-biocmanager
     - r-data.table
     - r-ggplot2
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - r-biocmanager
     - r-data.table
diff --git a/recipes/bioconductor-gotools/meta.yaml b/recipes/bioconductor-gotools/meta.yaml
index 73f28508453af..0da93c1095d5d 100644
--- a/recipes/bioconductor-gotools/meta.yaml
+++ b/recipes/bioconductor-gotools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.74.0" %}
+{% set version = "1.76.0" %}
 {% set name = "goTools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 68377c0224a6e3f7bac808ec7c4ae70c
+  md5: a91344726dcce37779380a18f6e9bc1d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gotools", max_pin="x.x") }}'
   noarch: generic
 # Suggests: hgu133a.db
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-gp53cdf/meta.yaml b/recipes/bioconductor-gp53cdf/meta.yaml
index 14b16bade6051..8bdbd9cb32bf1 100644
--- a/recipes/bioconductor-gp53cdf/meta.yaml
+++ b/recipes/bioconductor-gp53cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "gp53cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 2887dd15d3fa29b5c13b068c8d641f61
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gp53cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-gpa/meta.yaml b/recipes/bioconductor-gpa/meta.yaml
index 5d901016355f6..c5e078dff7b47 100644
--- a/recipes/bioconductor-gpa/meta.yaml
+++ b/recipes/bioconductor-gpa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "GPA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 94cd599b75ea787687e4c66fbf54eb85
+  md5: 2c1f0f3436c036a3e098d7780deb7282
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gpa", max_pin="x.x") }}'
 # Suggests: gpaExample
 # SystemRequirements: GNU make
 requirements:
diff --git a/recipes/bioconductor-gpaexample/meta.yaml b/recipes/bioconductor-gpaexample/meta.yaml
index b47ae952323c4..66694127c605d 100644
--- a/recipes/bioconductor-gpaexample/meta.yaml
+++ b/recipes/bioconductor-gpaexample/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "gpaExample" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e5cd543667831a4996249fcc3dee8224
+  md5: e989af58ed5bbc10573f7438b3ee7836
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gpaexample", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-gpaexample/post-link.sh b/recipes/bioconductor-gpaexample/post-link.sh
index efcb7585c143c..b48e9f2168532 100644
--- a/recipes/bioconductor-gpaexample/post-link.sh
+++ b/recipes/bioconductor-gpaexample/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "gpaexample-1.12.0"
+installBiocDataPackage.sh "gpaexample-1.14.0"
diff --git a/recipes/bioconductor-gpls/meta.yaml b/recipes/bioconductor-gpls/meta.yaml
index e2e521ed427a1..a685bbc90fd0d 100644
--- a/recipes/bioconductor-gpls/meta.yaml
+++ b/recipes/bioconductor-gpls/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "gpls" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c6d090f604af7c8c7b9f8478b7a7334f
+  md5: db6bc720156a5f7571a34e64b1189d3b
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gpls", max_pin="x.x") }}'
   noarch: generic
 # Suggests: MASS
 requirements:
diff --git a/recipes/bioconductor-gpumagic/meta.yaml b/recipes/bioconductor-gpumagic/meta.yaml
index 378952cb58bfc..4aaa1e52b559b 100644
--- a/recipes/bioconductor-gpumagic/meta.yaml
+++ b/recipes/bioconductor-gpumagic/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "gpuMagic" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e9b10f314b0124f19525cc73763e9b15
+  md5: b720e953b36ccc2db0c6b359f84b5c94
 build:
   skip: True  # [osx]
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gpumagic", max_pin="x.x") }}'
 # Suggests: testthat, knitr, rmarkdown, BiocStyle
 # SystemRequirements: 1. C++11, 2. a graphic driver or a CPU SDK. 3. ICD loader For Windows user, an ICD loader is required at C:/windows/system32/OpenCL.dll (Usually it is installed by the graphic driver). For Linux user (Except mac): ocl-icd-opencl-dev package is required. For Mac user, no action is needed for the system has installed the dependency. 4. GNU make
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - ocl-icd                            # [linux]
+    - khronos-opencl-icd-loader          # [osx]
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-deriv
     - r-desctools
@@ -32,9 +35,8 @@ requirements:
     - r-stringr
     - libblas
     - liblapack
-    - ocl-icd
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-deriv
     - r-desctools
@@ -42,7 +44,6 @@ requirements:
     - r-pryr
     - r-rcpp
     - r-stringr
-    - ocl-icd
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
diff --git a/recipes/bioconductor-granie/meta.yaml b/recipes/bioconductor-granie/meta.yaml
index caaac3289b655..b29c58c558196 100644
--- a/recipes/bioconductor-granie/meta.yaml
+++ b/recipes/bioconductor-granie/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.1" %}
+{% set version = "1.6.1" %}
 {% set name = "GRaNIE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 14f7e1ef111e181c602e29d04b07a36a
+  md5: d9db703063398ccd263ce6b54def9266
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-granie", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10, BSgenome.Mmusculus.UCSC.mm9, BSgenome.Rnorvegicus.UCSC.rn6, BSgenome.Rnorvegicus.UCSC.rn7, BSgenome.Dmelanogaster.UCSC.dm6, BSgenome.Mmulatta.UCSC.rheMac10, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Mmusculus.UCSC.mm10.knownGene, TxDb.Mmusculus.UCSC.mm9.knownGene, TxDb.Rnorvegicus.UCSC.rn6.refGene, TxDb.Rnorvegicus.UCSC.rn7.refGene, TxDb.Dmelanogaster.UCSC.dm6.ensGene, TxDb.Mmulatta.UCSC.rheMac10.refGene, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, org.Dm.eg.db, org.Mmu.eg.db, IHW, clusterProfiler, ReactomePA, DOSE, BiocFileCache, ChIPseeker, testthat (>= 3.0.0), BiocStyle, csaw, BiocParallel, WGCNA, variancePartition, purrr, EDASeq, JASPAR2022, TFBSTools, motifmatchr, rbioapi
+# Suggests: knitr, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10, BSgenome.Mmusculus.UCSC.mm9, BSgenome.Rnorvegicus.UCSC.rn6, BSgenome.Rnorvegicus.UCSC.rn7, BSgenome.Dmelanogaster.UCSC.dm6, BSgenome.Mmulatta.UCSC.rheMac10, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Mmusculus.UCSC.mm10.knownGene, TxDb.Mmusculus.UCSC.mm9.knownGene, TxDb.Rnorvegicus.UCSC.rn6.refGene, TxDb.Rnorvegicus.UCSC.rn7.refGene, TxDb.Dmelanogaster.UCSC.dm6.ensGene, TxDb.Mmulatta.UCSC.rheMac10.refGene, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, org.Dm.eg.db, org.Mmu.eg.db, IHW, clusterProfiler, ReactomePA, DOSE, BiocFileCache, ChIPseeker, testthat (>= 3.0.0), BiocStyle, csaw, BiocParallel, WGCNA, variancePartition, purrr, EDASeq, JASPAR2022, TFBSTools, motifmatchr, rbioapi, LDlinkR
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - r-checkmate
     - r-circlize
@@ -60,18 +61,18 @@ requirements:
     - r-tidyselect
     - r-viridis
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - r-checkmate
     - r-circlize
diff --git a/recipes/bioconductor-granulator/meta.yaml b/recipes/bioconductor-granulator/meta.yaml
index a25a11f292d22..1a7ce94a61265 100644
--- a/recipes/bioconductor-granulator/meta.yaml
+++ b/recipes/bioconductor-granulator/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "granulator" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 3dd49f32f5e06d8e71d2f9cf0061943b
+  md5: 05c4025460a33eb195280f676bd5695f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-granulator", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat
 requirements:
diff --git a/recipes/bioconductor-graper/meta.yaml b/recipes/bioconductor-graper/meta.yaml
index 36f59de7bbf4d..5f18d9093b48a 100644
--- a/recipes/bioconductor-graper/meta.yaml
+++ b/recipes/bioconductor-graper/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.1" %}
+{% set version = "1.18.0" %}
 {% set name = "graper" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: dfb81199dbe0b868891b0404ee6be865
+  md5: e969608b591224df6c92d73194adea89
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-graper", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, BiocStyle, testthat
 requirements:
   host:
diff --git a/recipes/bioconductor-graph/meta.yaml b/recipes/bioconductor-graph/meta.yaml
index cdff1216b3f78..3d9995b0183a9 100644
--- a/recipes/bioconductor-graph/meta.yaml
+++ b/recipes/bioconductor-graph/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.78.0" %}
+{% set version = "1.80.0" %}
 {% set name = "graph" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: cb2a06b2f76d5d7e1829110a2cac0790
+  md5: 735b96df0f7c955806148170220b75b2
   patches:
     - patch
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-graph", max_pin="x.x") }}'
 # Suggests: SparseM (>= 0.36), XML, RBGL, RUnit, cluster, BiocStyle, knitr
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
   build:
     - {{ compiler('c') }}
@@ -41,6 +42,8 @@ about:
   summary: 'graph: A package to handle graph data structures'
   description: 'A package that implements some simple graph handling capabilities.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:graph
     - doi:10.1038/nmeth.3252
diff --git a/recipes/bioconductor-graphalignment/meta.yaml b/recipes/bioconductor-graphalignment/meta.yaml
index c8feeee759960..29442eaaf9529 100644
--- a/recipes/bioconductor-graphalignment/meta.yaml
+++ b/recipes/bioconductor-graphalignment/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.64.0" %}
+{% set version = "1.66.0" %}
 {% set name = "GraphAlignment" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e833670324045ba6e5faf80b0dbddaa6
+  md5: 0bc71a4722d0771d97671e81103bc8bb
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-graphalignment", max_pin="x.x") }}'
 requirements:
   host:
     - r-base
diff --git a/recipes/bioconductor-graphat/meta.yaml b/recipes/bioconductor-graphat/meta.yaml
index 85bd95713a136..39efd6cd695cd 100644
--- a/recipes/bioconductor-graphat/meta.yaml
+++ b/recipes/bioconductor-graphat/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "GraphAT" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3024a1e165c2da03487c727786f4c69d
+  md5: 075a7ac1af3518ac6ef4b9087107b482
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-graphat", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-mcmcpack
   run:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-mcmcpack
 test:
diff --git a/recipes/bioconductor-graphite/meta.yaml b/recipes/bioconductor-graphite/meta.yaml
index 08b2ce2c7d527..cbbc5f5590f62 100644
--- a/recipes/bioconductor-graphite/meta.yaml
+++ b/recipes/bioconductor-graphite/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "graphite" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: ee3a1dfe540fddb10caaf9dc89cb9244
+  md5: 532e304cdb96a828c4b764bfd36cce85
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-graphite", max_pin="x.x") }}'
   noarch: generic
-# Suggests: checkmate, a4Preproc, ALL, BiocStyle, clipper, codetools, hgu133plus2.db, hgu95av2.db, impute, knitr, org.Hs.eg.db, parallel, R.rsp, RCy3, rmarkdown, SPIA (>= 2.2), testthat, topologyGSA (>= 1.4.0)
+# Suggests: checkmate, a4Preproc, ALL, BiocStyle, codetools, hgu133plus2.db, hgu95av2.db, impute, knitr, org.Hs.eg.db, parallel, R.rsp, RCy3, rmarkdown, SPIA (>= 2.2), testthat, topologyGSA (>= 1.4.0)
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-httr
     - r-purrr
     - r-rappdirs
     - r-rlang
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-httr
     - r-purrr
diff --git a/recipes/bioconductor-graphpac/meta.yaml b/recipes/bioconductor-graphpac/meta.yaml
index 10cffce0ab041..c773413a30f97 100644
--- a/recipes/bioconductor-graphpac/meta.yaml
+++ b/recipes/bioconductor-graphpac/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "GraphPAC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a2ef8baf70be32173344ee1de04df841
+  md5: 68794a35ae528c5cde68e7915611ace8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-graphpac", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-ipac >=1.44.0,<1.45.0'
+    - 'bioconductor-ipac >=1.46.0,<1.47.0'
     - r-base
     - r-igraph
     - r-rmallow
     - r-tsp
   run:
-    - 'bioconductor-ipac >=1.44.0,<1.45.0'
+    - 'bioconductor-ipac >=1.46.0,<1.47.0'
     - r-base
     - r-igraph
     - r-rmallow
diff --git a/recipes/bioconductor-grasp2db/meta.yaml b/recipes/bioconductor-grasp2db/meta.yaml
index 432e8571038f2..d1c3907d36ee0 100644
--- a/recipes/bioconductor-grasp2db/meta.yaml
+++ b/recipes/bioconductor-grasp2db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.1.0" %}
 {% set name = "grasp2db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,31 +13,32 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 3fc90fc7c99e7da51dcbb687fd2d5515
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-grasp2db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: gwascat, knitr
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
     - r-base
     - r-dbplyr
     - r-digest
     - r-dplyr
     - r-rsqlite
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
     - r-base
     - r-dbplyr
     - r-digest
     - r-dplyr
     - r-rsqlite
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-grenits/meta.yaml b/recipes/bioconductor-grenits/meta.yaml
index 3cc7ca338509b..3625cf4b661d6 100644
--- a/recipes/bioconductor-grenits/meta.yaml
+++ b/recipes/bioconductor-grenits/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.52.1" %}
+{% set version = "1.54.0" %}
 {% set name = "GRENITS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: add877533a70243aba3429d02a1b9bd1
+  md5: fd00e191f8c57c6ef54146263d21a089
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-grenits", max_pin="x.x") }}'
 # Suggests: network
 requirements:
   host:
diff --git a/recipes/bioconductor-greylistchip/meta.yaml b/recipes/bioconductor-greylistchip/meta.yaml
index 73198ac32ab4d..69807bd80c9c9 100644
--- a/recipes/bioconductor-greylistchip/meta.yaml
+++ b/recipes/bioconductor-greylistchip/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "GreyListChIP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9ed3e5d046abc71c57b41dcd6d67ef41
+  md5: 42fa9dbbc56cc2c4fdf511ce67ee234e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-greylistchip", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, BiocGenerics, RUnit, BSgenome.Hsapiens.UCSC.hg19
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-mass
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-mass
 test:
diff --git a/recipes/bioconductor-grmetrics/meta.yaml b/recipes/bioconductor-grmetrics/meta.yaml
index 48850d9efee42..138a1f01df8f1 100644
--- a/recipes/bioconductor-grmetrics/meta.yaml
+++ b/recipes/bioconductor-grmetrics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "GRmetrics" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 26897f28f8310a63c26bfee3ef9aa5f1
+  md5: 16b27cb79eafe9dbdbb84f0626c5f8da
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-grmetrics", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, tinytex
 requirements:
   host:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-drc
     - r-ggplot2
     - r-plotly
   run:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-drc
     - r-ggplot2
diff --git a/recipes/bioconductor-grndata/meta.yaml b/recipes/bioconductor-grndata/meta.yaml
index 4835bd51bcf00..19ec93513a47e 100644
--- a/recipes/bioconductor-grndata/meta.yaml
+++ b/recipes/bioconductor-grndata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "grndata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: e105a77f883593cbe67ddbdbe5ad91e3
+  md5: 0ebac67277a5ca915f9a971d3659af5e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-grndata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, knitr
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-grndata/post-link.sh b/recipes/bioconductor-grndata/post-link.sh
index 5abbe76404e07..cc47b0a1e8a7f 100644
--- a/recipes/bioconductor-grndata/post-link.sh
+++ b/recipes/bioconductor-grndata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "grndata-1.32.0"
+installBiocDataPackage.sh "grndata-1.34.0"
diff --git a/recipes/bioconductor-grohmm/meta.yaml b/recipes/bioconductor-grohmm/meta.yaml
index e0cf197abaf2b..87b8145806798 100644
--- a/recipes/bioconductor-grohmm/meta.yaml
+++ b/recipes/bioconductor-grohmm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "groHMM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,32 +11,33 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1b485a920aa3764cdae9b4d49acbbe67
+  md5: 0b1077948ddc9895c57188ca2560bc10
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-grohmm", max_pin="x.x") }}'
 # Suggests: BiocStyle, GenomicFeatures, edgeR, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene
 requirements:
   host:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-mass
     - libblas
     - liblapack
   run:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-mass
   build:
@@ -47,8 +48,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-3
+  license: GPL-3.0-only
   summary: 'GRO-seq Analysis Pipeline'
   description: 'A pipeline for the analysis of GRO-seq data.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
diff --git a/recipes/bioconductor-gsalightning/meta.yaml b/recipes/bioconductor-gsalightning/meta.yaml
index bc51010324050..f343d529a8d02 100644
--- a/recipes/bioconductor-gsalightning/meta.yaml
+++ b/recipes/bioconductor-gsalightning/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "GSALightning" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 99107f0b7eb3b834af9628c73cdd2232
+  md5: c6828603275d57045e613f1e7c0f143d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gsalightning", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
diff --git a/recipes/bioconductor-gsar/meta.yaml b/recipes/bioconductor-gsar/meta.yaml
index a49a1d187b976..294a6678158ba 100644
--- a/recipes/bioconductor-gsar/meta.yaml
+++ b/recipes/bioconductor-gsar/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "GSAR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 992d2824583ed572a43b035014d13681
+  md5: 9828682d8721bde17ea31c9ed807174d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gsar", max_pin="x.x") }}'
   noarch: generic
 # Suggests: MASS, GSVAdata, ALL, tweeDEseqCountData, GSEABase, annotate, org.Hs.eg.db, Biobase, genefilter, hgu95av2.db, edgeR, BiocStyle
 requirements:
diff --git a/recipes/bioconductor-gsbenchmark/meta.yaml b/recipes/bioconductor-gsbenchmark/meta.yaml
index 0c3705cce95ea..562dacde1d6fc 100644
--- a/recipes/bioconductor-gsbenchmark/meta.yaml
+++ b/recipes/bioconductor-gsbenchmark/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "GSBenchMark" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 67ad80e0d9aca2b2403031b8f5d79f57
+  md5: bedfa52de1b414ae5fe9d5fc376380ba
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gsbenchmark", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-gsbenchmark/post-link.sh b/recipes/bioconductor-gsbenchmark/post-link.sh
index 639c923dcdb2d..7e75d49468c5e 100644
--- a/recipes/bioconductor-gsbenchmark/post-link.sh
+++ b/recipes/bioconductor-gsbenchmark/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "gsbenchmark-1.20.0"
+installBiocDataPackage.sh "gsbenchmark-1.22.0"
diff --git a/recipes/bioconductor-gsca/meta.yaml b/recipes/bioconductor-gsca/meta.yaml
index 111c55efa76c6..a02a1031371d3 100644
--- a/recipes/bioconductor-gsca/meta.yaml
+++ b/recipes/bioconductor-gsca/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.30.0" %}
+{% set version = "2.32.0" %}
 {% set name = "GSCA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 84486e7f5a9c1efb94dd0e8fd46347c1
+  md5: 6cf569e7be20a330c190c8c3af6f0654
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gsca", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Affyhgu133aExpr, Affymoe4302Expr, Affyhgu133A2Expr, Affyhgu133Plus2Expr
 requirements:
   host:
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
     - r-base
     - r-ggplot2
     - r-gplots
@@ -30,7 +31,7 @@ requirements:
     - r-shiny
     - r-sp
   run:
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
     - r-base
     - r-ggplot2
     - r-gplots
diff --git a/recipes/bioconductor-gse103322/meta.yaml b/recipes/bioconductor-gse103322/meta.yaml
index 9d5041b4df503..78cde2aa8566a 100644
--- a/recipes/bioconductor-gse103322/meta.yaml
+++ b/recipes/bioconductor-gse103322/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "GSE103322" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5f0ae42096e6851fc40f3c45831d38c7
+  md5: 3816b430b716edaaa0ef22dba38cf58e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gse103322", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ExperimentHub (>= 0.99.6), knitr, BiocStyle, rmarkdown, SummarizedExperiment, SingleCellExperiment
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-gse103322/post-link.sh b/recipes/bioconductor-gse103322/post-link.sh
index 400e8f8c47a7d..719c9773297fe 100644
--- a/recipes/bioconductor-gse103322/post-link.sh
+++ b/recipes/bioconductor-gse103322/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "gse103322-1.6.0"
+installBiocDataPackage.sh "gse103322-1.8.0"
diff --git a/recipes/bioconductor-gse13015/meta.yaml b/recipes/bioconductor-gse13015/meta.yaml
index ad1dd80f10e5c..f6b004027246e 100644
--- a/recipes/bioconductor-gse13015/meta.yaml
+++ b/recipes/bioconductor-gse13015/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "GSE13015" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 749148d0e8ddb719e43d6513e340e8b6
+  md5: 99fae6872abf6820842a1340f7fd6b4e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gse13015", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ExperimentHub (>= 0.99.6), knitr, BiocStyle, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-gse13015/post-link.sh b/recipes/bioconductor-gse13015/post-link.sh
index dcba32af32068..03e9a7afbddbe 100644
--- a/recipes/bioconductor-gse13015/post-link.sh
+++ b/recipes/bioconductor-gse13015/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "gse13015-1.8.0"
+installBiocDataPackage.sh "gse13015-1.10.0"
diff --git a/recipes/bioconductor-gse159526/meta.yaml b/recipes/bioconductor-gse159526/meta.yaml
index 41485e8f1644d..abca80d825751 100644
--- a/recipes/bioconductor-gse159526/meta.yaml
+++ b/recipes/bioconductor-gse159526/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "GSE159526" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 930aac8c4e8b481b62e489d6e5d94487
+  md5: d89442c94cb87f0760a9f0f85426a8fa
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gse159526", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ExperimentHub, BiocStyle, RefManageR, knitr, rmarkdown, testthat, minfi, tibble, sessioninfo
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-gse159526/post-link.sh b/recipes/bioconductor-gse159526/post-link.sh
index 7caa9a6ed0578..70558b3f8c891 100644
--- a/recipes/bioconductor-gse159526/post-link.sh
+++ b/recipes/bioconductor-gse159526/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "gse159526-1.6.0"
+installBiocDataPackage.sh "gse159526-1.8.0"
diff --git a/recipes/bioconductor-gse62944/meta.yaml b/recipes/bioconductor-gse62944/meta.yaml
index 4bd7db2ce4430..925d457637f38 100644
--- a/recipes/bioconductor-gse62944/meta.yaml
+++ b/recipes/bioconductor-gse62944/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.1" %}
+{% set version = "1.30.0" %}
 {% set name = "GSE62944" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8759202f2247d2a60d0bb17acfffad6a
+  md5: 5b6c58aaee948c9cd0e0d52b5adcf264
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gse62944", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ExperimentHub (>= 0.99.6), knitr, BiocStyle, rmarkdown, DESeq2
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-gse62944/post-link.sh b/recipes/bioconductor-gse62944/post-link.sh
index 49a2bf82549c1..35edd4d1cec52 100644
--- a/recipes/bioconductor-gse62944/post-link.sh
+++ b/recipes/bioconductor-gse62944/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "gse62944-1.28.1"
+installBiocDataPackage.sh "gse62944-1.30.0"
diff --git a/recipes/bioconductor-gseabase/meta.yaml b/recipes/bioconductor-gseabase/meta.yaml
index f7a33aceccb03..87db5ecfad250 100644
--- a/recipes/bioconductor-gseabase/meta.yaml
+++ b/recipes/bioconductor-gseabase/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.62.0" %}
+{% set version = "1.64.0" %}
 {% set name = "GSEABase" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ac49fd7057e13a7485d3fcd18036e2f8
+  md5: a9d4d48654c9a05cdec2f09f8f805c4e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gseabase", max_pin="x.x") }}'
   noarch: generic
 # Suggests: hgu95av2.db, GO.db, org.Hs.eg.db, Rgraphviz, ReportingTools, testthat, BiocStyle, knitr, RUnit
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-xml
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-xml
 test:
diff --git a/recipes/bioconductor-gseabenchmarker/meta.yaml b/recipes/bioconductor-gseabenchmarker/meta.yaml
index 2c863dcc8f95f..d3a50bed81819 100644
--- a/recipes/bioconductor-gseabenchmarker/meta.yaml
+++ b/recipes/bioconductor-gseabenchmarker/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "GSEABenchmarkeR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,42 +11,43 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 34229c527aba8c7025fa9d310f3f2d16
+  md5: 9f297d155b3c254f091eb70a180ea9fa
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gseabenchmarker", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, GSE62944, knitr, rappdirs, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-enrichmentbrowser >=2.30.0,<2.31.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-keggandmetacoredzpathwaysgeo >=1.20.0,<1.21.0'
-    - 'bioconductor-keggdzpathwaysgeo >=1.38.0,<1.39.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-enrichmentbrowser >=2.32.0,<2.33.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-keggandmetacoredzpathwaysgeo >=1.22.0,<1.23.0'
+    - 'bioconductor-keggdzpathwaysgeo >=1.40.0,<1.41.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-enrichmentbrowser >=2.30.0,<2.31.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-keggandmetacoredzpathwaysgeo >=1.20.0,<1.21.0'
-    - 'bioconductor-keggdzpathwaysgeo >=1.38.0,<1.39.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-enrichmentbrowser >=2.32.0,<2.33.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-keggandmetacoredzpathwaysgeo >=1.22.0,<1.23.0'
+    - 'bioconductor-keggdzpathwaysgeo >=1.40.0,<1.41.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-gsealm/meta.yaml b/recipes/bioconductor-gsealm/meta.yaml
index e0da1b02b43b4..502e5017b9cf4 100644
--- a/recipes/bioconductor-gsealm/meta.yaml
+++ b/recipes/bioconductor-gsealm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.60.0" %}
+{% set version = "1.62.0" %}
 {% set name = "GSEAlm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2df157d143a03b871109690f6b4769c7
+  md5: b88623d080b75bb6775026e9e6c4dd9e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gsealm", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GSEABase,Category, multtest, ALL, annotate, hgu95av2.db, genefilter, GOstats, RColorBrewer
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-gseamining/meta.yaml b/recipes/bioconductor-gseamining/meta.yaml
index 2ade682c1a61e..bff37cad1e697 100644
--- a/recipes/bioconductor-gseamining/meta.yaml
+++ b/recipes/bioconductor-gseamining/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "GSEAmining" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,14 +11,15 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 473b3365763356450a2e7820736ca4dd
+  md5: 703f12fed97e95761b2cd41894da0645
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gseamining", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr, rmarkdown, BiocStyle, clusterProfiler, testthat
+# Suggests: knitr, rmarkdown, BiocStyle, clusterProfiler, testthat, tm
 requirements:
   host:
     - r-base
diff --git a/recipes/bioconductor-gsean/meta.yaml b/recipes/bioconductor-gsean/meta.yaml
index 699c899ca2f21..56e88aeaa6ee8 100644
--- a/recipes/bioconductor-gsean/meta.yaml
+++ b/recipes/bioconductor-gsean/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.2" %}
+{% set version = "1.22.0" %}
 {% set name = "gsean" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 86ad318c3f149e10fc6561c415b1ca96
+  md5: 501dfe30896b53197345abe9d1600247
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gsean", max_pin="x.x") }}'
 # Suggests: SummarizedExperiment, pasilla, org.Dm.eg.db, AnnotationDbi, knitr, plotly, WGCNA, rmarkdown
 requirements:
   host:
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-ppinfer >=1.26.0,<1.27.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-ppinfer >=1.28.0,<1.29.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-ppinfer >=1.26.0,<1.27.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-ppinfer >=1.28.0,<1.29.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-gsgalgor/meta.yaml b/recipes/bioconductor-gsgalgor/meta.yaml
index 13bc612d97a4a..cf311c036c026 100644
--- a/recipes/bioconductor-gsgalgor/meta.yaml
+++ b/recipes/bioconductor-gsgalgor/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "GSgalgoR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3f05f9acb6cf8bdc69944006f950d689
+  md5: 09d5b90490f44ee7384c71762228244d
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gsgalgor", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, ggplot2, BiocStyle, genefu, survcomp, Biobase, survminer, breastCancerTRANSBIG, breastCancerUPP, iC10TrainingData, pamr, testthat
 requirements:
diff --git a/recipes/bioconductor-gsreg/meta.yaml b/recipes/bioconductor-gsreg/meta.yaml
index 44f757afe803f..42f7a252d92c8 100644
--- a/recipes/bioconductor-gsreg/meta.yaml
+++ b/recipes/bioconductor-gsreg/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "GSReg" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5c4d1a7a4a517c6c05a30694549f144f
+  md5: 631e2589b571bfcdf38b5673ba0693d0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gsreg", max_pin="x.x") }}'
 # Suggests: GenomicRanges, GSBenchMark
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-gsri/meta.yaml b/recipes/bioconductor-gsri/meta.yaml
index 1d0bb1fb961a6..80acc691c0711 100644
--- a/recipes/bioconductor-gsri/meta.yaml
+++ b/recipes/bioconductor-gsri/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.48.0" %}
+{% set version = "2.50.0" %}
 {% set name = "GSRI" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: be540e94ade102397a842e6857d772d4
+  md5: 686ab91e4ee0adeb4828a5b2ac2f6943
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gsri", max_pin="x.x") }}'
   noarch: generic
 # Suggests: limma, hgu95av2.db
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-les >=1.50.0,<1.51.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-les >=1.52.0,<1.53.0'
     - r-base
     - r-fdrtool
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-les >=1.50.0,<1.51.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-les >=1.52.0,<1.53.0'
     - r-base
     - r-fdrtool
 test:
diff --git a/recipes/bioconductor-gsva/meta.yaml b/recipes/bioconductor-gsva/meta.yaml
index 4d6b781e794e2..b921c6e030815 100644
--- a/recipes/bioconductor-gsva/meta.yaml
+++ b/recipes/bioconductor-gsva/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.2" %}
+{% set version = "1.50.0" %}
 {% set name = "GSVA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,44 +11,45 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4732baaf15d6d75e98374e143039d541
+  md5: e21af1ab9dabfa5801fb978b50f992e2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gsva", max_pin="x.x") }}'
 # Suggests: BiocGenerics, RUnit, BiocStyle, knitr, rmarkdown, limma, RColorBrewer, org.Hs.eg.db, genefilter, edgeR, GSVAdata, shiny, shinydashboard, ggplot2, data.table, plotly, future, promises, shinybusy, shinyjs
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-sparsematrixstats >=1.12.0,<1.13.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-sparsematrixstats >=1.14.0,<1.15.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-matrix >=1.5-0'
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-sparsematrixstats >=1.12.0,<1.13.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-sparsematrixstats >=1.14.0,<1.15.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-matrix >=1.5-0'
   build:
@@ -60,7 +61,7 @@ test:
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: 'GPL (>= 2)'
-  summary: 'Gene Set Variation Analysis for microarray and RNA-seq data'
+  summary: 'Gene Set Variation Analysis for Microarray and RNA-Seq Data'
   description: 'Gene Set Variation Analysis (GSVA) is a non-parametric, unsupervised method for estimating variation of gene set enrichment through the samples of a expression data set. GSVA performs a change in coordinate systems, transforming the data from a gene by sample matrix to a gene-set by sample matrix, thereby allowing the evaluation of pathway enrichment for each sample. This new matrix of GSVA enrichment scores facilitates applying standard analytical methods like functional enrichment, survival analysis, clustering, CNV-pathway analysis or cross-tissue pathway analysis, in a pathway-centric manner.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
diff --git a/recipes/bioconductor-gsvadata/meta.yaml b/recipes/bioconductor-gsvadata/meta.yaml
index 7c0fcff56d32d..b4a138b0bd959 100644
--- a/recipes/bioconductor-gsvadata/meta.yaml
+++ b/recipes/bioconductor-gsvadata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "GSVAdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 745225b064d2d82499906b03543ee0ac
+  md5: 3c2d6a66967ab8c3c2545fc3323282b3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gsvadata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
     - 'bioconductor-hgu95a.db >=3.13.0,<3.14.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
     - 'bioconductor-hgu95a.db >=3.13.0,<3.14.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-gsvadata/post-link.sh b/recipes/bioconductor-gsvadata/post-link.sh
index 7f3de7e3f402e..47efe8a70a147 100644
--- a/recipes/bioconductor-gsvadata/post-link.sh
+++ b/recipes/bioconductor-gsvadata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "gsvadata-1.36.0"
+installBiocDataPackage.sh "gsvadata-1.38.0"
diff --git a/recipes/bioconductor-gtrellis/meta.yaml b/recipes/bioconductor-gtrellis/meta.yaml
index 6eb24455fff17..161c476c7d085 100644
--- a/recipes/bioconductor-gtrellis/meta.yaml
+++ b/recipes/bioconductor-gtrellis/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "gtrellis" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: b3e1e7fce6888cb1ead8c1ad4f637708
+  md5: 795b74d96310e3cd9a5771bd8695cf64
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gtrellis", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 1.0.0), knitr, RColorBrewer, markdown, rmarkdown, ComplexHeatmap (>= 1.99.0), Cairo, png, jpeg, tiff
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - 'r-circlize >=0.4.8'
     - r-getoptlong
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - 'r-circlize >=0.4.8'
     - r-getoptlong
diff --git a/recipes/bioconductor-guideseq/meta.yaml b/recipes/bioconductor-guideseq/meta.yaml
index 0ada362630533..b3a7b618ced7e 100644
--- a/recipes/bioconductor-guideseq/meta.yaml
+++ b/recipes/bioconductor-guideseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "GUIDEseq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9005588165cf4614cf71fefb7fa0e42d
+  md5: fe01afa9546bc7bdc1fbeea8c8bda8db
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-guideseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, RUnit, BiocStyle, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg38, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-chippeakanno >=3.34.0,<3.35.0'
-    - 'bioconductor-crisprseek >=1.40.0,<1.41.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-chippeakanno >=3.36.0,<3.37.0'
+    - 'bioconductor-crisprseek >=1.42.0,<1.43.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -49,20 +50,20 @@ requirements:
     - r-stringr
     - r-tidyr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-chippeakanno >=3.34.0,<3.35.0'
-    - 'bioconductor-crisprseek >=1.40.0,<1.41.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-chippeakanno >=3.36.0,<3.37.0'
+    - 'bioconductor-crisprseek >=1.42.0,<1.43.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-dplyr
diff --git a/recipes/bioconductor-guitar/meta.yaml b/recipes/bioconductor-guitar/meta.yaml
index 282ac72e4515c..5ead73d849ee9 100644
--- a/recipes/bioconductor-guitar/meta.yaml
+++ b/recipes/bioconductor-guitar/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.16.0" %}
+{% set version = "2.18.0" %}
 {% set name = "Guitar" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a2c085559ba2fd466f795f3ae5877db7
+  md5: e62e4238e3e3b939a2195eb384079bb3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-guitar", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-dplyr
     - r-ggplot2
     - r-knitr
     - r-magrittr
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-gviz/meta.yaml b/recipes/bioconductor-gviz/meta.yaml
index 49cf722385529..e0c413f6a6708 100644
--- a/recipes/bioconductor-gviz/meta.yaml
+++ b/recipes/bioconductor-gviz/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.44.0" %}
+{% set version = "1.46.1" %}
 {% set name = "Gviz" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ea2e7a3016f67158d00b4d116482da04
+  md5: 2e1eba2ac7cb0d1178f17bba471b0a62
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gviz", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Hsapiens.UCSC.hg19, xml2, BiocStyle, knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-biovizbase >=1.48.0,<1.49.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-biovizbase >=1.50.0,<1.51.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - 'r-digest >=0.6.8'
     - r-lattice
@@ -45,23 +46,23 @@ requirements:
     - 'r-matrixstats >=0.8.14'
     - r-rcolorbrewer
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-biovizbase >=1.48.0,<1.49.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-biovizbase >=1.50.0,<1.51.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - 'r-digest >=0.6.8'
     - r-lattice
diff --git a/recipes/bioconductor-gwas.bayes/meta.yaml b/recipes/bioconductor-gwas.bayes/meta.yaml
index c0cf1fbc23391..e00fe8aad9e30 100644
--- a/recipes/bioconductor-gwas.bayes/meta.yaml
+++ b/recipes/bioconductor-gwas.bayes/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "GWAS.BAYES" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9e8733509e3803574f9b92e9902010d8
+  md5: cf62f1d1c5f69ef4051bf659da548b1f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gwas.bayes", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, formatR, rrBLUP
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - 'r-caret >=6.0-86'
     - 'r-ga >=3.2'
@@ -29,7 +30,7 @@ requirements:
     - 'r-matrix >=1.2-18'
     - 'r-memoise >=1.1.0'
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - 'r-caret >=6.0-86'
     - 'r-ga >=3.2'
diff --git a/recipes/bioconductor-gwascat/meta.yaml b/recipes/bioconductor-gwascat/meta.yaml
index 8458e47b680fb..fd05265aa675a 100644
--- a/recipes/bioconductor-gwascat/meta.yaml
+++ b/recipes/bioconductor-gwascat/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.32.0" %}
+{% set version = "2.34.0" %}
 {% set name = "gwascat" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,41 +11,42 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 47e8a78f635d5137f6ce804a50edfb9f
+  md5: a7cbd1d5ac4b3d4fbb8d1fbd77269e44
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gwascat", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DO.db, DT, knitr, RBGL, testthat, rmarkdown, dplyr, Gviz, Rsamtools, rtracklayer, graph, ggbio, DelayedArray, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, BiocStyle
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-snpstats >=1.50.0,<1.51.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-snpstats >=1.52.0,<1.53.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-readr
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-snpstats >=1.50.0,<1.51.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-snpstats >=1.52.0,<1.53.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-readr
 test:
diff --git a/recipes/bioconductor-gwascatdata/meta.yaml b/recipes/bioconductor-gwascatdata/meta.yaml
index 44fc9e5897fe5..993381303c0d2 100644
--- a/recipes/bioconductor-gwascatdata/meta.yaml
+++ b/recipes/bioconductor-gwascatdata/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.6" %}
 {% set name = "gwascatData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: fa09db539ac0a16ba136e810a5b9970a
 build:
-  number: 4
+  number: 5
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gwascatdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, AnnotationHub, rmarkdown, knitr
 requirements:
@@ -27,7 +28,7 @@ requirements:
     - r-base
     - r-data.table
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-gwasdata/meta.yaml b/recipes/bioconductor-gwasdata/meta.yaml
index f81ccc89c6f9b..f30c72237cf4e 100644
--- a/recipes/bioconductor-gwasdata/meta.yaml
+++ b/recipes/bioconductor-gwasdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.1" %}
+{% set version = "1.40.0" %}
 {% set name = "GWASdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f613097e6cc22f457d1de41f8e677aa6
+  md5: 57fec70f980b9e476f0c59d397797815
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gwasdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ncdf4
 requirements:
   host:
-    - 'bioconductor-gwastools >=1.46.0,<1.47.0'
+    - 'bioconductor-gwastools >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-gwastools >=1.46.0,<1.47.0'
+    - 'bioconductor-gwastools >=1.48.0,<1.49.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-gwasdata/post-link.sh b/recipes/bioconductor-gwasdata/post-link.sh
index 691a1bc8e0e26..11e8192ddace6 100644
--- a/recipes/bioconductor-gwasdata/post-link.sh
+++ b/recipes/bioconductor-gwasdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "gwasdata-1.38.1"
+installBiocDataPackage.sh "gwasdata-1.40.0"
diff --git a/recipes/bioconductor-gwastools/meta.yaml b/recipes/bioconductor-gwastools/meta.yaml
index 5e09816c4bd28..1607a30635493 100644
--- a/recipes/bioconductor-gwastools/meta.yaml
+++ b/recipes/bioconductor-gwastools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "GWASTools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 71908b60ba4de5563bc3729ee64193cb
+  md5: af968b8e8a3e4a1981cae02cb2a781ec
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gwastools", max_pin="x.x") }}'
   noarch: generic
-# Suggests: ncdf4, GWASdata, BiocGenerics, RUnit, Biostrings, GenomicRanges, IRanges, SNPRelate, snpStats, S4Vectors, VariantAnnotation, parallel
+# Suggests: ncdf4, GWASdata, BiocGenerics, RUnit, Biostrings, GenomicRanges, IRanges, SNPRelate, snpStats, S4Vectors, VariantAnnotation, parallel, BiocStyle, knitr
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-quantsmooth >=1.66.0,<1.67.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-quantsmooth >=1.68.0,<1.69.0'
     - r-base
     - r-data.table
     - r-dbi
@@ -35,10 +36,10 @@ requirements:
     - r-sandwich
     - r-survival
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-quantsmooth >=1.66.0,<1.67.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-quantsmooth >=1.68.0,<1.69.0'
     - r-base
     - r-data.table
     - r-dbi
diff --git a/recipes/bioconductor-gwasurvivr/meta.yaml b/recipes/bioconductor-gwasurvivr/meta.yaml
index 87a442730f93c..c62748b8cba02 100644
--- a/recipes/bioconductor-gwasurvivr/meta.yaml
+++ b/recipes/bioconductor-gwasurvivr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "gwasurvivr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 53493a3fa552b7a0d357cfb2a459a6aa
+  md5: 699843eb7ff1528732a6a2e093600aef
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gwasurvivr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-gwastools >=1.46.0,<1.47.0'
-    - 'bioconductor-snprelate >=1.34.0,<1.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-gwastools >=1.48.0,<1.49.0'
+    - 'bioconductor-snprelate >=1.36.0,<1.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-matrixstats
     - r-survival
   run:
-    - 'bioconductor-gwastools >=1.46.0,<1.47.0'
-    - 'bioconductor-snprelate >=1.34.0,<1.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-gwastools >=1.48.0,<1.49.0'
+    - 'bioconductor-snprelate >=1.36.0,<1.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-matrixstats
     - r-survival
diff --git a/recipes/bioconductor-gwena/meta.yaml b/recipes/bioconductor-gwena/meta.yaml
index c0772b6ce57ac..9ded48032ed13 100644
--- a/recipes/bioconductor-gwena/meta.yaml
+++ b/recipes/bioconductor-gwena/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "GWENA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7db0c32d0fd31879561c5325e0f5b571
+  md5: 8f1bd435deae9546d0ec3f8605a0b682
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-gwena", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 2.1.0), knitr (>= 1.25), rmarkdown (>= 1.16), prettydoc (>= 0.3.0), httr (>= 1.4.1), S4Vectors (>= 0.22.1), BiocStyle (>= 2.15.8)
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-cluster >=2.1.0'
     - 'r-dplyr >=0.8.3'
@@ -40,7 +41,7 @@ requirements:
     - 'r-tidyr >=1.0.0'
     - 'r-wgcna >=1.67'
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-cluster >=2.1.0'
     - 'r-dplyr >=0.8.3'
diff --git a/recipes/bioconductor-h10kcod.db/meta.yaml b/recipes/bioconductor-h10kcod.db/meta.yaml
index 4ca070938e6ba..c4c1dfaeef710 100644
--- a/recipes/bioconductor-h10kcod.db/meta.yaml
+++ b/recipes/bioconductor-h10kcod.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.4.0" %}
 {% set name = "h10kcod.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: a555739cea229f286953c3297c145e9c
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-h10kcod.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-h20kcod.db/meta.yaml b/recipes/bioconductor-h20kcod.db/meta.yaml
index 36fa342084d4d..8427bc3859258 100644
--- a/recipes/bioconductor-h20kcod.db/meta.yaml
+++ b/recipes/bioconductor-h20kcod.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.4.0" %}
 {% set name = "h20kcod.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 3647facb272f58424f4c94ef92e8ee45
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-h20kcod.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-h5vc/meta.yaml b/recipes/bioconductor-h5vc/meta.yaml
index b0e9d79f7de3e..d5c396bb578ac 100644
--- a/recipes/bioconductor-h5vc/meta.yaml
+++ b/recipes/bioconductor-h5vc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.34.0" %}
+{% set version = "2.36.0" %}
 {% set name = "h5vc" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 8322cd34695b64b550a28eac35740c63
+  md5: 2d827ac4606ef723005e479de8540b7a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-h5vc", max_pin="x.x") }}'
 # Suggests: knitr, locfit, BSgenome.Hsapiens.UCSC.hg19, biomaRt, BSgenome.Hsapiens.NCBI.GRCh38, RUnit, BiocGenerics, rmarkdown
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-h5vcdata >=2.20.0,<2.21.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-h5vcdata >=2.22.0,<2.23.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-abind
     - r-base
     - r-batchjobs
@@ -40,16 +41,16 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-h5vcdata >=2.20.0,<2.21.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-h5vcdata >=2.22.0,<2.23.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-abind
     - r-base
     - r-batchjobs
diff --git a/recipes/bioconductor-h5vcdata/meta.yaml b/recipes/bioconductor-h5vcdata/meta.yaml
index 3b31e5f911d04..7edd272d4b3ef 100644
--- a/recipes/bioconductor-h5vcdata/meta.yaml
+++ b/recipes/bioconductor-h5vcdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.20.0" %}
+{% set version = "2.22.0" %}
 {% set name = "h5vcData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e233ff9873648c459591fda6942a8790
+  md5: c251316e2d6dc6cb90e8faad0015103b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-h5vcdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: h5vc
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-h5vcdata/post-link.sh b/recipes/bioconductor-h5vcdata/post-link.sh
index f44cf91b76794..1962bfe15c1eb 100644
--- a/recipes/bioconductor-h5vcdata/post-link.sh
+++ b/recipes/bioconductor-h5vcdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "h5vcdata-2.20.0"
+installBiocDataPackage.sh "h5vcdata-2.22.0"
diff --git a/recipes/bioconductor-hapfabia/meta.yaml b/recipes/bioconductor-hapfabia/meta.yaml
index f317c897e36cc..ff56c6ea7dada 100644
--- a/recipes/bioconductor-hapfabia/meta.yaml
+++ b/recipes/bioconductor-hapfabia/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "hapFabia" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 43b510f5d1b6e18ad523e0429a84618b
+  md5: a14370aec9e86245541aea68b90c3812
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hapfabia", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-fabia >=2.46.0,<2.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-fabia >=2.48.0,<2.49.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-fabia >=2.46.0,<2.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-fabia >=2.48.0,<2.49.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-hapmap100khind/meta.yaml b/recipes/bioconductor-hapmap100khind/meta.yaml
index bc6cd30450d6f..3b61d5d83e55f 100644
--- a/recipes/bioconductor-hapmap100khind/meta.yaml
+++ b/recipes/bioconductor-hapmap100khind/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "hapmap100khind" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: ec3213b4ced09f678386a981176e3410
+  md5: 0168028295626d811e305d4008ce9996
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hapmap100khind", max_pin="x.x") }}'
   noarch: generic
 # Suggests: oligo
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hapmap100khind/post-link.sh b/recipes/bioconductor-hapmap100khind/post-link.sh
index 0a039b707cc55..d9f5a26dbbc86 100644
--- a/recipes/bioconductor-hapmap100khind/post-link.sh
+++ b/recipes/bioconductor-hapmap100khind/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "hapmap100khind-1.42.0"
+installBiocDataPackage.sh "hapmap100khind-1.44.0"
diff --git a/recipes/bioconductor-hapmap100kxba/meta.yaml b/recipes/bioconductor-hapmap100kxba/meta.yaml
index 0191502c36e6b..50530871601de 100644
--- a/recipes/bioconductor-hapmap100kxba/meta.yaml
+++ b/recipes/bioconductor-hapmap100kxba/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "hapmap100kxba" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 46a995b0ad38d46aebdf89c52678c587
+  md5: b4a619fb108a36920109307fbf63985b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hapmap100kxba", max_pin="x.x") }}'
   noarch: generic
 # Suggests: oligo
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hapmap100kxba/post-link.sh b/recipes/bioconductor-hapmap100kxba/post-link.sh
index 6f5564a5a776c..e71f400872e77 100644
--- a/recipes/bioconductor-hapmap100kxba/post-link.sh
+++ b/recipes/bioconductor-hapmap100kxba/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "hapmap100kxba-1.42.0"
+installBiocDataPackage.sh "hapmap100kxba-1.44.0"
diff --git a/recipes/bioconductor-hapmap370k/meta.yaml b/recipes/bioconductor-hapmap370k/meta.yaml
index cb3865a809e87..4711fa3319d8d 100644
--- a/recipes/bioconductor-hapmap370k/meta.yaml
+++ b/recipes/bioconductor-hapmap370k/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.1" %}
 {% set name = "hapmap370k" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 569556341a45da799372aaf1012be72e
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hapmap370k", max_pin="x.x") }}'
   noarch: generic
 # Suggests: crlmm
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hapmap500knsp/meta.yaml b/recipes/bioconductor-hapmap500knsp/meta.yaml
index 63f11361b25e2..379eb3e96b54a 100644
--- a/recipes/bioconductor-hapmap500knsp/meta.yaml
+++ b/recipes/bioconductor-hapmap500knsp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "hapmap500knsp" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c54725a8ec3607d9db051ef7dfb8b16f
+  md5: 15b799bba4a395ccf715acfc7bbdae04
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hapmap500knsp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: oligo
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hapmap500knsp/post-link.sh b/recipes/bioconductor-hapmap500knsp/post-link.sh
index f7cfbfd4b45a1..1d91347c61c09 100644
--- a/recipes/bioconductor-hapmap500knsp/post-link.sh
+++ b/recipes/bioconductor-hapmap500knsp/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "hapmap500knsp-1.42.0"
+installBiocDataPackage.sh "hapmap500knsp-1.44.0"
diff --git a/recipes/bioconductor-hapmap500ksty/meta.yaml b/recipes/bioconductor-hapmap500ksty/meta.yaml
index c9e4a88c27127..d4b94cf67c00c 100644
--- a/recipes/bioconductor-hapmap500ksty/meta.yaml
+++ b/recipes/bioconductor-hapmap500ksty/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "hapmap500ksty" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: b283985ebfd5c8eace1e5f436fb1d07c
+  md5: 7a1d4983ac3e411dadedc130d85c2557
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hapmap500ksty", max_pin="x.x") }}'
   noarch: generic
 # Suggests: oligo
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hapmap500ksty/post-link.sh b/recipes/bioconductor-hapmap500ksty/post-link.sh
index ce7389adcc9e4..fe55de17a68f4 100644
--- a/recipes/bioconductor-hapmap500ksty/post-link.sh
+++ b/recipes/bioconductor-hapmap500ksty/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "hapmap500ksty-1.42.0"
+installBiocDataPackage.sh "hapmap500ksty-1.44.0"
diff --git a/recipes/bioconductor-hapmapsnp5/meta.yaml b/recipes/bioconductor-hapmapsnp5/meta.yaml
index a9c280b8ca83e..d3d9f4de67114 100644
--- a/recipes/bioconductor-hapmapsnp5/meta.yaml
+++ b/recipes/bioconductor-hapmapsnp5/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "hapmapsnp5" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: ccc4fe2a3fcb840365fb2b3bdec3cfd8
+  md5: 2f14e60f39cf94c43f2dd0e5aa5a48e2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hapmapsnp5", max_pin="x.x") }}'
   noarch: generic
 # Suggests: oligo
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hapmapsnp5/post-link.sh b/recipes/bioconductor-hapmapsnp5/post-link.sh
index b4eb52c418b84..de833d94f68c6 100644
--- a/recipes/bioconductor-hapmapsnp5/post-link.sh
+++ b/recipes/bioconductor-hapmapsnp5/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "hapmapsnp5-1.42.0"
+installBiocDataPackage.sh "hapmapsnp5-1.44.0"
diff --git a/recipes/bioconductor-hapmapsnp6/meta.yaml b/recipes/bioconductor-hapmapsnp6/meta.yaml
index 499bcbdbecc09..17aec4ff0bb9d 100644
--- a/recipes/bioconductor-hapmapsnp6/meta.yaml
+++ b/recipes/bioconductor-hapmapsnp6/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "hapmapsnp6" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: a6ca8fb7d228e64ba1567d4cb7bcd81e
+  md5: 2635c012a513343484177db2070209e9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hapmapsnp6", max_pin="x.x") }}'
   noarch: generic
 # Suggests: oligo, oligoClasses
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hapmapsnp6/post-link.sh b/recipes/bioconductor-hapmapsnp6/post-link.sh
index eb074feda8ad7..44c99a5802936 100644
--- a/recipes/bioconductor-hapmapsnp6/post-link.sh
+++ b/recipes/bioconductor-hapmapsnp6/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "hapmapsnp6-1.42.0"
+installBiocDataPackage.sh "hapmapsnp6-1.44.0"
diff --git a/recipes/bioconductor-harbchip/meta.yaml b/recipes/bioconductor-harbchip/meta.yaml
index 7ef59a1f169ca..ee6acbfff7d6f 100644
--- a/recipes/bioconductor-harbchip/meta.yaml
+++ b/recipes/bioconductor-harbchip/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "harbChIP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5713ddec61a7771a7c8be36ced779ef1
+  md5: f5948fc0f4c1ced0a43e85c1885f5d9e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-harbchip", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-harbchip/post-link.sh b/recipes/bioconductor-harbchip/post-link.sh
index 0300d3a1f20b5..d2133dee6fc33 100644
--- a/recipes/bioconductor-harbchip/post-link.sh
+++ b/recipes/bioconductor-harbchip/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "harbchip-1.38.0"
+installBiocDataPackage.sh "harbchip-1.40.0"
diff --git a/recipes/bioconductor-harman/meta.yaml b/recipes/bioconductor-harman/meta.yaml
index 64348ff3cf2d6..aa06daaaff680 100644
--- a/recipes/bioconductor-harman/meta.yaml
+++ b/recipes/bioconductor-harman/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "Harman" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c60199c4fb9c66f65597ea11d926f410
+  md5: aaec4256c0cb2949d553ff81d94e48d2
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-harman", max_pin="x.x") }}'
 # Suggests: HarmanData, BiocGenerics, BiocStyle, knitr, rmarkdown, RUnit, RColorBrewer, bladderbatch, limma, minfi, lumi, msmsEDA, affydata, minfiData, sva
 requirements:
   host:
diff --git a/recipes/bioconductor-harmandata/meta.yaml b/recipes/bioconductor-harmandata/meta.yaml
index ab52d0029ec7c..f0076f4ffdd6a 100644
--- a/recipes/bioconductor-harmandata/meta.yaml
+++ b/recipes/bioconductor-harmandata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "HarmanData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 43bca3e57aee5603fda4b7be1cb9c738
+  md5: 7df1447aff75abdf025678b51a0ee8fb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-harmandata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, BiocStyle, knitr, rmarkdown, Harman (>= 1.23.3)
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-harmandata/post-link.sh b/recipes/bioconductor-harmandata/post-link.sh
index f61d2ad4aff59..bfce705eabe09 100644
--- a/recipes/bioconductor-harmandata/post-link.sh
+++ b/recipes/bioconductor-harmandata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "harmandata-1.28.0"
+installBiocDataPackage.sh "harmandata-1.30.0"
diff --git a/recipes/bioconductor-harmonizedtcgadata/meta.yaml b/recipes/bioconductor-harmonizedtcgadata/meta.yaml
index 38b5ec17a9e77..c421c5e1b4ec4 100644
--- a/recipes/bioconductor-harmonizedtcgadata/meta.yaml
+++ b/recipes/bioconductor-harmonizedtcgadata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "HarmonizedTCGAData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c615eb02dbda3204fb5f3d9308a0115c
+  md5: f6e8f685a67152c6f382089c0e6aae01
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-harmonizedtcgadata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: AnnotationHub, knitr, rmarkdown, igraph, survival, ANF, stats, testthat
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-harmonizedtcgadata/post-link.sh b/recipes/bioconductor-harmonizedtcgadata/post-link.sh
index a524f01cbd414..dbe5eabb855e7 100644
--- a/recipes/bioconductor-harmonizedtcgadata/post-link.sh
+++ b/recipes/bioconductor-harmonizedtcgadata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "harmonizedtcgadata-1.22.0"
+installBiocDataPackage.sh "harmonizedtcgadata-1.24.0"
diff --git a/recipes/bioconductor-harmonizr/build.sh b/recipes/bioconductor-harmonizr/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-harmonizr/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-harmonizr/meta.yaml b/recipes/bioconductor-harmonizr/meta.yaml
new file mode 100644
index 0000000000000..ee8a16ab953cf
--- /dev/null
+++ b/recipes/bioconductor-harmonizr/meta.yaml
@@ -0,0 +1,53 @@
+{% set version = "1.0.0" %}
+{% set name = "HarmonizR" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 6e81c009fe8678273d8091378ae2f8e3
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-harmonizr", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
+requirements:
+  host:
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
+    - r-base
+    - 'r-doparallel >=1.0.16'
+    - 'r-foreach >=1.5.1'
+    - 'r-janitor >=2.1.0'
+    - 'r-plyr >=1.8.6'
+    - 'r-seriation >=1.3.5'
+  run:
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
+    - r-base
+    - 'r-doparallel >=1.0.16'
+    - 'r-foreach >=1.5.1'
+    - 'r-janitor >=2.1.0'
+    - 'r-plyr >=1.8.6'
+    - 'r-seriation >=1.3.5'
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'Handles missing values and makes more data available'
+  description: 'An implementation, which takes input data and makes it available for proper batch effect removal by ComBat or Limma. The implementation appropriately handles missing values by dissecting the input matrix into smaller matrices with sufficient data to feed the ComBat or limma algorithm. The adjusted data is returned to the user as a rebuild matrix. The implementation is meant to make as much data available as possible with minimal data loss.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-harshlight/meta.yaml b/recipes/bioconductor-harshlight/meta.yaml
index 023d6e9ae198e..2a5a3f49a1f5e 100644
--- a/recipes/bioconductor-harshlight/meta.yaml
+++ b/recipes/bioconductor-harshlight/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "Harshlight" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6e7e404fef55917ab6b589f77430a8ec
+  md5: 36adabb3111ae035069431431dd9434a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-harshlight", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-altcdfenvs >=2.62.0,<2.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-altcdfenvs >=2.64.0,<2.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-altcdfenvs >=2.62.0,<2.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-altcdfenvs >=2.64.0,<2.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-hca/meta.yaml b/recipes/bioconductor-hca/meta.yaml
index ed97a3695a444..0d284f48c3444 100644
--- a/recipes/bioconductor-hca/meta.yaml
+++ b/recipes/bioconductor-hca/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.1" %}
+{% set version = "1.10.0" %}
 {% set name = "hca" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 0bad76d71df17bd87e1f256b1ece6bfc
+  md5: 8a1c812efb51ab7e30a7d419bdf918a3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hca", max_pin="x.x") }}'
   noarch: generic
 # Suggests: LoomExperiment, SummarizedExperiment, SingleCellExperiment, S4Vectors, methods, testthat (>= 3.0.0), knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
     - r-base
     - r-digest
     - r-dplyr
@@ -34,7 +35,7 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
     - r-base
     - r-digest
     - r-dplyr
diff --git a/recipes/bioconductor-hcadata/meta.yaml b/recipes/bioconductor-hcadata/meta.yaml
index 510ec4f2806c0..de0348abe7497 100644
--- a/recipes/bioconductor-hcadata/meta.yaml
+++ b/recipes/bioconductor-hcadata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "HCAData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c8a2e18f3a29f80ba013759f6c87619e
+  md5: 4f16bf5904ca21c0fb0bd6515d7ab4d3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hcadata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, scran (>= 1.11.4), BiocSingular, scater, scuttle, Rtsne, igraph, iSEE, testthat
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hcadata/post-link.sh b/recipes/bioconductor-hcadata/post-link.sh
index a7d7e277e5273..66d5690d2efbb 100644
--- a/recipes/bioconductor-hcadata/post-link.sh
+++ b/recipes/bioconductor-hcadata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "hcadata-1.16.0"
+installBiocDataPackage.sh "hcadata-1.18.0"
diff --git a/recipes/bioconductor-hcatonsildata/meta.yaml b/recipes/bioconductor-hcatonsildata/meta.yaml
new file mode 100644
index 0000000000000..c329508ef650e
--- /dev/null
+++ b/recipes/bioconductor-hcatonsildata/meta.yaml
@@ -0,0 +1,57 @@
+{% set version = "1.0.0" %}
+{% set name = "HCATonsilData" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: dda9d216f608690d05bd5ffbcb73bb05
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hcatonsildata", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: knitr, ggplot2, testthat (>= 3.0.0), scater, Seurat, Signac, zellkonverter, iSEE, ggspavis, kableExtra, BiocStyle
+requirements:
+  host:
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-base64enc
+    - r-htmltools
+    - r-rmarkdown
+  run:
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-base64enc
+    - r-htmltools
+    - r-rmarkdown
+    - curl
+    - 'bioconductor-data-packages >=20231203'
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/html/{{ name }}.html'
+  license: 'MIT + file LICENSE'
+  summary: 'Provide programmatic access to the tonsil cell atlas datasets'
+  description: 'This package provides access to the scRNA-seq, scATAC-seq, multiome, CITE-seq and spatial transcriptomics (Visium) data generated by the tonsil cell atlas in the context of the Human Cell Atlas (HCA). The data is provided via the Bioconductor project in the form of SingleCellExperiments. Additionally, information on the whole compendium of identified cell types is provided in form of a glossary.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-hcatonsildata/post-link.sh b/recipes/bioconductor-hcatonsildata/post-link.sh
new file mode 100644
index 0000000000000..55f8721ee344a
--- /dev/null
+++ b/recipes/bioconductor-hcatonsildata/post-link.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+installBiocDataPackage.sh "hcatonsildata-1.0.0"
diff --git a/recipes/bioconductor-hcatonsildata/pre-unlink.sh b/recipes/bioconductor-hcatonsildata/pre-unlink.sh
new file mode 100644
index 0000000000000..7b67c6f0a09f6
--- /dev/null
+++ b/recipes/bioconductor-hcatonsildata/pre-unlink.sh
@@ -0,0 +1 @@
+R CMD REMOVE --library=$PREFIX/lib/R/library/ HCATonsilData
diff --git a/recipes/bioconductor-hcg110.db/meta.yaml b/recipes/bioconductor-hcg110.db/meta.yaml
index 11261857c2e11..c77a258d0c61b 100644
--- a/recipes/bioconductor-hcg110.db/meta.yaml
+++ b/recipes/bioconductor-hcg110.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "hcg110.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 4c536c3539a61d7f1f67dac149f10b11
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hcg110.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hcg110cdf/meta.yaml b/recipes/bioconductor-hcg110cdf/meta.yaml
index 7e24db7b745c9..6460e345d15fd 100644
--- a/recipes/bioconductor-hcg110cdf/meta.yaml
+++ b/recipes/bioconductor-hcg110cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hcg110cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b53167876217ddb301204719da23eafc
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hcg110cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hcg110probe/meta.yaml b/recipes/bioconductor-hcg110probe/meta.yaml
index 28ac1ca33e9d9..43ac0da0bf42d 100644
--- a/recipes/bioconductor-hcg110probe/meta.yaml
+++ b/recipes/bioconductor-hcg110probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hcg110probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 51af8d6a7090ea7c5fe630dcea68bfb3
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hcg110probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hd2013sgi/meta.yaml b/recipes/bioconductor-hd2013sgi/meta.yaml
index c9386c47fc272..bfee69a492903 100644
--- a/recipes/bioconductor-hd2013sgi/meta.yaml
+++ b/recipes/bioconductor-hd2013sgi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "HD2013SGI" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,38 +11,39 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4cc03451c32df17e2a946ab45d32659e
+  md5: f8c7020a4fbfcb5c4026cea93e5a5bc6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hd2013sgi", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-geneplotter >=1.78.0,<1.79.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-splots >=1.66.0,<1.67.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-geneplotter >=1.80.0,<1.81.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-splots >=1.68.0,<1.69.0'
     - r-base
     - r-gplots
     - r-lsd
     - r-rcolorbrewer
     - r-vcd
   run:
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-geneplotter >=1.78.0,<1.79.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-splots >=1.66.0,<1.67.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-geneplotter >=1.80.0,<1.81.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-splots >=1.68.0,<1.69.0'
     - r-base
     - r-gplots
     - r-lsd
     - r-rcolorbrewer
     - r-vcd
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hd2013sgi/post-link.sh b/recipes/bioconductor-hd2013sgi/post-link.sh
index ec3b2ce7c28e1..498c6fc12a428 100644
--- a/recipes/bioconductor-hd2013sgi/post-link.sh
+++ b/recipes/bioconductor-hd2013sgi/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "hd2013sgi-1.40.0"
+installBiocDataPackage.sh "hd2013sgi-1.42.0"
diff --git a/recipes/bioconductor-hdcytodata/meta.yaml b/recipes/bioconductor-hdcytodata/meta.yaml
index b4b799a8de2e3..45497fcf65184 100644
--- a/recipes/bioconductor-hdcytodata/meta.yaml
+++ b/recipes/bioconductor-hdcytodata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "HDCytoData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0ab01564970b77ca4d62db12c07a1ed4
+  md5: 8f962c6124539fea7a4a02a30e776de8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hdcytodata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, Rtsne, umap, ggplot2, FlowSOM, mclust
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hdcytodata/post-link.sh b/recipes/bioconductor-hdcytodata/post-link.sh
index 8b22d0b2aedcd..d0ac96449fd70 100644
--- a/recipes/bioconductor-hdcytodata/post-link.sh
+++ b/recipes/bioconductor-hdcytodata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "hdcytodata-1.20.0"
+installBiocDataPackage.sh "hdcytodata-1.22.0"
diff --git a/recipes/bioconductor-hdf5array/meta.yaml b/recipes/bioconductor-hdf5array/meta.yaml
index 9a96452b591ca..c3284e5d6eadf 100644
--- a/recipes/bioconductor-hdf5array/meta.yaml
+++ b/recipes/bioconductor-hdf5array/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.1" %}
+{% set version = "1.30.0" %}
 {% set name = "HDF5Array" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,37 +11,38 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 13cc3879d4e7ef05ed4ffaa9c0e80429
+  md5: c59fcd283e0f9877f68457524b9d86bb
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hdf5array", max_pin="x.x") }}'
 # Suggests: BiocParallel, GenomicRanges, SummarizedExperiment (>= 1.15.1), h5vcData, ExperimentHub, TENxBrainData, zellkonverter, GenomicFeatures, RUnit, SingleCellExperiment
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rhdf5filters >=1.12.0,<1.13.0'
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
-    - 'bioconductor-s4arrays >=1.0.0,<1.1.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rhdf5filters >=1.14.0,<1.15.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
+    - 'bioconductor-s4arrays >=1.2.0,<1.3.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-matrix
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rhdf5filters >=1.12.0,<1.13.0'
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
-    - 'bioconductor-s4arrays >=1.0.0,<1.1.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rhdf5filters >=1.14.0,<1.15.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
+    - 'bioconductor-s4arrays >=1.2.0,<1.3.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-matrix
   build:
@@ -56,6 +57,8 @@ about:
   summary: 'HDF5 backend for DelayedArray objects'
   description: 'Implement the HDF5Array, H5SparseMatrix, H5ADMatrix, and TENxMatrix classes, 4 convenient and memory-efficient array-like containers for representing and manipulating either: (1) a conventional (a.k.a. dense) HDF5 dataset, (2) an HDF5 sparse matrix (stored in CSR/CSC/Yale format), (3) the central matrix of an h5ad file (or any matrix in the /layers group), or (4) a 10x Genomics sparse matrix. All these containers are DelayedArray extensions and thus support all operations (delayed or block-processed) supported by DelayedArray objects.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:hdf5array
     - doi:10.1038/nmeth.3252
diff --git a/recipes/bioconductor-hdo.db/meta.yaml b/recipes/bioconductor-hdo.db/meta.yaml
index 28a3ad127fb79..451b87e2c1add 100644
--- a/recipes/bioconductor-hdo.db/meta.yaml
+++ b/recipes/bioconductor-hdo.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.1" %}
 {% set name = "HDO.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 007a50523f1de27048dfc97f4d458f59
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hdo.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, knitr, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hdtd/meta.yaml b/recipes/bioconductor-hdtd/meta.yaml
index d01a3252b7342..f9eedc12bc226 100644
--- a/recipes/bioconductor-hdtd/meta.yaml
+++ b/recipes/bioconductor-hdtd/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.1" %}
+{% set version = "1.36.0" %}
 {% set name = "HDTD" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1c3037443550f72d6e196587d5b8af94
+  md5: c990bac6152195272ae3aa3557f8b82b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hdtd", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown
 requirements:
   host:
diff --git a/recipes/bioconductor-healthycontrolspresencechecker/meta.yaml b/recipes/bioconductor-healthycontrolspresencechecker/meta.yaml
index 56d07db97bf39..e9081da4b5fd8 100644
--- a/recipes/bioconductor-healthycontrolspresencechecker/meta.yaml
+++ b/recipes/bioconductor-healthycontrolspresencechecker/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "healthyControlsPresenceChecker" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cc422930fe0cf3237bc707d107517381
+  md5: 50ba7cea9e361d43c78d64ce1c89ba1a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-healthycontrolspresencechecker", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, markdown, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
     - r-base
     - r-geneexpressionfromgeo
     - r-magrittr
     - r-xml2
   run:
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
     - r-base
     - r-geneexpressionfromgeo
     - r-magrittr
     - r-xml2
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-healthycontrolspresencechecker/post-link.sh b/recipes/bioconductor-healthycontrolspresencechecker/post-link.sh
index 9d5fddf3a957a..a259bb6b38c3a 100644
--- a/recipes/bioconductor-healthycontrolspresencechecker/post-link.sh
+++ b/recipes/bioconductor-healthycontrolspresencechecker/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "healthycontrolspresencechecker-1.4.0"
+installBiocDataPackage.sh "healthycontrolspresencechecker-1.6.0"
diff --git a/recipes/bioconductor-healthyflowdata/meta.yaml b/recipes/bioconductor-healthyflowdata/meta.yaml
index fac084e69c483..8797dd046a6e7 100644
--- a/recipes/bioconductor-healthyflowdata/meta.yaml
+++ b/recipes/bioconductor-healthyflowdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "healthyFlowData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 478453f16b73527c4f1a9c5697d0b576
+  md5: ed0a9c99295e278a8445368a2cb226df
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-healthyflowdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
   run:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-healthyflowdata/post-link.sh b/recipes/bioconductor-healthyflowdata/post-link.sh
index a0537a8057659..0e206a9e263b2 100644
--- a/recipes/bioconductor-healthyflowdata/post-link.sh
+++ b/recipes/bioconductor-healthyflowdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "healthyflowdata-1.38.0"
+installBiocDataPackage.sh "healthyflowdata-1.40.0"
diff --git a/recipes/bioconductor-heatmaps/meta.yaml b/recipes/bioconductor-heatmaps/meta.yaml
index 95d30caecdb5e..5e3b7691db75b 100644
--- a/recipes/bioconductor-heatmaps/meta.yaml
+++ b/recipes/bioconductor-heatmaps/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "heatmaps" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d94b93fd4532100c3d31e9cb7985c6c5
+  md5: 68b0a507dd5b2bcdfef2106195429dc2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-heatmaps", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Drerio.UCSC.danRer7, knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-kernsmooth
     - r-matrix
     - r-plotrix
     - r-rcolorbrewer
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-kernsmooth
     - r-matrix
diff --git a/recipes/bioconductor-heatplus/meta.yaml b/recipes/bioconductor-heatplus/meta.yaml
index d2c6de8674d1f..2e65c161b133c 100644
--- a/recipes/bioconductor-heatplus/meta.yaml
+++ b/recipes/bioconductor-heatplus/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.8.0" %}
+{% set version = "3.10.0" %}
 {% set name = "Heatplus" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ffa5d82b6d75383ab65c286ff8b9d707
+  md5: 459fb0dbd1242699e9f394f156a7e0c1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-heatplus", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biobase, hgu95av2.db, limma
 requirements:
diff --git a/recipes/bioconductor-heebodata/meta.yaml b/recipes/bioconductor-heebodata/meta.yaml
index ad3e7a9b3d12a..b2bccf7c7e017 100644
--- a/recipes/bioconductor-heebodata/meta.yaml
+++ b/recipes/bioconductor-heebodata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "HEEBOdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cf931bc3409e110143d9090c8cb37c9a
+  md5: 885df0689d6663e079e952ea297ee777
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-heebodata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-heebodata/post-link.sh b/recipes/bioconductor-heebodata/post-link.sh
index 9fe644ff2fb14..af9b31ef9b0a2 100644
--- a/recipes/bioconductor-heebodata/post-link.sh
+++ b/recipes/bioconductor-heebodata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "heebodata-1.38.0"
+installBiocDataPackage.sh "heebodata-1.40.0"
diff --git a/recipes/bioconductor-helloranges/meta.yaml b/recipes/bioconductor-helloranges/meta.yaml
index 3d920b2f06697..5e449934f1360 100644
--- a/recipes/bioconductor-helloranges/meta.yaml
+++ b/recipes/bioconductor-helloranges/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "HelloRanges" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,47 +11,48 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3ab315f2b6ce576e79f3c00634c2ad24
+  md5: a83b42b9a323f3f3e356bfa8bbc0fd85
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-helloranges", max_pin="x.x") }}'
   noarch: generic
-# Suggests: HelloRangesData, BiocStyle
+# Suggests: HelloRangesData, BiocStyle, RUnit, TxDb.Hsapiens.UCSC.hg19.knownGene
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocio >=1.10.0,<1.11.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocio >=1.12.0,<1.13.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-docopt
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocio >=1.10.0,<1.11.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocio >=1.12.0,<1.13.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-docopt
 test:
diff --git a/recipes/bioconductor-hellorangesdata/meta.yaml b/recipes/bioconductor-hellorangesdata/meta.yaml
index 5abcb2471cc13..4b189bec162c2 100644
--- a/recipes/bioconductor-hellorangesdata/meta.yaml
+++ b/recipes/bioconductor-hellorangesdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "HelloRangesData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 34dbe70ca5ea008e5a17803388bed705
+  md5: 6ae6ac65f3af7f41136eb6fb3558eb2a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hellorangesdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hellorangesdata/post-link.sh b/recipes/bioconductor-hellorangesdata/post-link.sh
index 242daf849104e..3a9fee9bcee90 100644
--- a/recipes/bioconductor-hellorangesdata/post-link.sh
+++ b/recipes/bioconductor-hellorangesdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "hellorangesdata-1.26.0"
+installBiocDataPackage.sh "hellorangesdata-1.28.0"
diff --git a/recipes/bioconductor-help/meta.yaml b/recipes/bioconductor-help/meta.yaml
index 819de68209db2..02757fe4dc641 100644
--- a/recipes/bioconductor-help/meta.yaml
+++ b/recipes/bioconductor-help/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.58.0" %}
+{% set version = "1.60.0" %}
 {% set name = "HELP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0e664628988f8c6e0b63403618256654
+  md5: d7a1038ee6eb5ec01393b39e30e028fe
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-help", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-hem/meta.yaml b/recipes/bioconductor-hem/meta.yaml
index 9e13985e30272..d6fe622e155cb 100644
--- a/recipes/bioconductor-hem/meta.yaml
+++ b/recipes/bioconductor-hem/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "HEM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5099d4d170fe1738efbb549fabbf70a1
+  md5: 3ad1825d95504eaf9e2bcad8438816f5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hem", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-hermes/meta.yaml b/recipes/bioconductor-hermes/meta.yaml
index cb190ad49ec97..628da60c967f4 100644
--- a/recipes/bioconductor-hermes/meta.yaml
+++ b/recipes/bioconductor-hermes/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "hermes" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 7a2aabc5a9a77c759a57a56683e6e351
+  md5: af1e1dd4bab597cfb7b0bd12a1e9e7dd
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hermes", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, DelayedArray, DT, grid, httr, knitr, rmarkdown, statmod, testthat (>= 2.0), vdiffr, withr
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - 'r-checkmate >=2.1'
@@ -52,18 +53,18 @@ requirements:
     - r-rlang
     - r-tidyr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - 'r-checkmate >=2.1'
diff --git a/recipes/bioconductor-heron/build.sh b/recipes/bioconductor-heron/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-heron/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-heron/meta.yaml b/recipes/bioconductor-heron/meta.yaml
new file mode 100644
index 0000000000000..abc4916803605
--- /dev/null
+++ b/recipes/bioconductor-heron/meta.yaml
@@ -0,0 +1,61 @@
+{% set version = "1.0.0" %}
+{% set name = "HERON" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 9c146a8d99bada338098732e1de5a5e2
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-heron", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
+requirements:
+  host:
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-cluster
+    - r-data.table
+    - r-harmonicmeanp
+    - r-matrix
+    - r-matrixstats
+    - r-metap
+    - r-spdep
+  run:
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-cluster
+    - r-data.table
+    - r-harmonicmeanp
+    - r-matrix
+    - r-matrixstats
+    - r-metap
+    - r-spdep
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'GPL (>= 3)'
+  summary: 'Hierarchical Epitope pROtein biNding'
+  description: 'HERON is a software package for analyzing peptide binding array data. In addition to identifying significant binding probes, HERON also provides functions for finding epitopes (string of consecutive peptides within a protein). HERON also calculates significance on the probe, epitope, and protein level by employing meta p-value methods.  HERON is designed for obtaining calls on the sample level and calculates fractions of hits for different conditions.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-herper/meta.yaml b/recipes/bioconductor-herper/meta.yaml
index a315614ff78d6..1ec27237788bd 100644
--- a/recipes/bioconductor-herper/meta.yaml
+++ b/recipes/bioconductor-herper/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "Herper" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6a83b6c90414e5508e93fea96042b9b2
+  md5: dad437a472cae186246d3cf0f6b44964
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-herper", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, testthat, knitr, rmarkdown, seqCNA
 requirements:
diff --git a/recipes/bioconductor-hgc/meta.yaml b/recipes/bioconductor-hgc/meta.yaml
index 51b48cf81af8b..415c8beba464a 100644
--- a/recipes/bioconductor-hgc/meta.yaml
+++ b/recipes/bioconductor-hgc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "HGC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cac848972223a04ae6d10ba3599b4bcf
+  md5: 7a8ac62af3106b62952c79c162937a3c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgc", max_pin="x.x") }}'
 # Suggests: BiocStyle, rmarkdown, knitr, testthat (>= 3.0.0)
 # SystemRequirements: C++11
 requirements:
diff --git a/recipes/bioconductor-hgfocus.db/meta.yaml b/recipes/bioconductor-hgfocus.db/meta.yaml
index af9be261c0a2e..7aed356288bfa 100644
--- a/recipes/bioconductor-hgfocus.db/meta.yaml
+++ b/recipes/bioconductor-hgfocus.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "hgfocus.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: a6bee48c0aa947d3c7d25ef2c5a4d485
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgfocus.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgfocuscdf/meta.yaml b/recipes/bioconductor-hgfocuscdf/meta.yaml
index 38c059916b7e8..eff511fe7d21c 100644
--- a/recipes/bioconductor-hgfocuscdf/meta.yaml
+++ b/recipes/bioconductor-hgfocuscdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgfocuscdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 9883e53bfd9ddb9ad5f3a9c2e47bbd2c
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgfocuscdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgfocusprobe/meta.yaml b/recipes/bioconductor-hgfocusprobe/meta.yaml
index b8d1a35b27883..778b13ab99e1f 100644
--- a/recipes/bioconductor-hgfocusprobe/meta.yaml
+++ b/recipes/bioconductor-hgfocusprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgfocusprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 0a399ed276b89e3d80946b6cbbf167b4
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgfocusprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu133a.db/meta.yaml b/recipes/bioconductor-hgu133a.db/meta.yaml
index 4ead650e6e28e..7f4d6907ae274 100644
--- a/recipes/bioconductor-hgu133a.db/meta.yaml
+++ b/recipes/bioconductor-hgu133a.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "hgu133a.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 97675c27b13624bdfd760460dbca6bf0
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu133a.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu133a2.db/meta.yaml b/recipes/bioconductor-hgu133a2.db/meta.yaml
index 5451366bc530a..4d8b4ac0c42dd 100644
--- a/recipes/bioconductor-hgu133a2.db/meta.yaml
+++ b/recipes/bioconductor-hgu133a2.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "hgu133a2.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: e3bf9c5c9941f5f378cbc3dbeb9919ee
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu133a2.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu133a2cdf/meta.yaml b/recipes/bioconductor-hgu133a2cdf/meta.yaml
index 2c72bc37d575d..f9a09d9b3bf33 100644
--- a/recipes/bioconductor-hgu133a2cdf/meta.yaml
+++ b/recipes/bioconductor-hgu133a2cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgu133a2cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 566bc70f0bb94a376bf88f191a2f067e
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu133a2cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu133a2frmavecs/meta.yaml b/recipes/bioconductor-hgu133a2frmavecs/meta.yaml
index af2cc6fcc3608..94e507f7794fa 100644
--- a/recipes/bioconductor-hgu133a2frmavecs/meta.yaml
+++ b/recipes/bioconductor-hgu133a2frmavecs/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.2.0" %}
 {% set name = "hgu133a2frmavecs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 4bf8cf5cbaf288ce0a9618d764c87044
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu133a2frmavecs", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu133a2probe/meta.yaml b/recipes/bioconductor-hgu133a2probe/meta.yaml
index d6bb19c287baf..6ee5643b2e00d 100644
--- a/recipes/bioconductor-hgu133a2probe/meta.yaml
+++ b/recipes/bioconductor-hgu133a2probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgu133a2probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 736b43cfc37a297ccc0d30cb75fcc95a
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu133a2probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu133abarcodevecs/meta.yaml b/recipes/bioconductor-hgu133abarcodevecs/meta.yaml
index 47b87218b5752..c86306fc1565e 100644
--- a/recipes/bioconductor-hgu133abarcodevecs/meta.yaml
+++ b/recipes/bioconductor-hgu133abarcodevecs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "hgu133abarcodevecs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: af366465c10e3dbc799cdedab97d179d
+  md5: 4a6ec67e649f7ca004242fd860f79521
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu133abarcodevecs", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu133abarcodevecs/post-link.sh b/recipes/bioconductor-hgu133abarcodevecs/post-link.sh
index b1a041adb2aa2..fba77b0ea4940 100644
--- a/recipes/bioconductor-hgu133abarcodevecs/post-link.sh
+++ b/recipes/bioconductor-hgu133abarcodevecs/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "hgu133abarcodevecs-1.38.0"
+installBiocDataPackage.sh "hgu133abarcodevecs-1.40.0"
diff --git a/recipes/bioconductor-hgu133acdf/meta.yaml b/recipes/bioconductor-hgu133acdf/meta.yaml
index badb6b318aba0..d4d21cf580157 100644
--- a/recipes/bioconductor-hgu133acdf/meta.yaml
+++ b/recipes/bioconductor-hgu133acdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgu133acdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: d3e0e22b2d3943d26c94e7c01b91035c
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu133acdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu133afrmavecs/meta.yaml b/recipes/bioconductor-hgu133afrmavecs/meta.yaml
index 55c69a277dee1..97d6ef809ddbb 100644
--- a/recipes/bioconductor-hgu133afrmavecs/meta.yaml
+++ b/recipes/bioconductor-hgu133afrmavecs/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.5.0" %}
 {% set name = "hgu133afrmavecs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 85034ab02491f5b3699d210cef50812d
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu133afrmavecs", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu133aprobe/meta.yaml b/recipes/bioconductor-hgu133aprobe/meta.yaml
index 333427025e466..289e639bf7daa 100644
--- a/recipes/bioconductor-hgu133aprobe/meta.yaml
+++ b/recipes/bioconductor-hgu133aprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgu133aprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 76cd9c54b0a8a0240dbb0fc758959d62
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu133aprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu133atagcdf/meta.yaml b/recipes/bioconductor-hgu133atagcdf/meta.yaml
index 7e52e847c7760..96ad110b6ed05 100644
--- a/recipes/bioconductor-hgu133atagcdf/meta.yaml
+++ b/recipes/bioconductor-hgu133atagcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgu133atagcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 01f8809e0deb5b83f3f0decec881a1d8
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu133atagcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu133atagprobe/meta.yaml b/recipes/bioconductor-hgu133atagprobe/meta.yaml
index cac2c3028f5e8..26c2b3d196144 100644
--- a/recipes/bioconductor-hgu133atagprobe/meta.yaml
+++ b/recipes/bioconductor-hgu133atagprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgu133atagprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 97aeaf9ac9450369cf030581b8ec5a53
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu133atagprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu133b.db/meta.yaml b/recipes/bioconductor-hgu133b.db/meta.yaml
index ffedbcc4e1d0b..1667653d2b6b0 100644
--- a/recipes/bioconductor-hgu133b.db/meta.yaml
+++ b/recipes/bioconductor-hgu133b.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "hgu133b.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: ff7930c99300c1022fde06ebe5c4a8cc
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu133b.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu133bcdf/meta.yaml b/recipes/bioconductor-hgu133bcdf/meta.yaml
index 5fe9e5a76a972..0d9eb06173948 100644
--- a/recipes/bioconductor-hgu133bcdf/meta.yaml
+++ b/recipes/bioconductor-hgu133bcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgu133bcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 649aaa5e6275be6ee4d24d80ca390ea5
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu133bcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu133bprobe/meta.yaml b/recipes/bioconductor-hgu133bprobe/meta.yaml
index 92c0cd13bbe02..ea232fc9d19a3 100644
--- a/recipes/bioconductor-hgu133bprobe/meta.yaml
+++ b/recipes/bioconductor-hgu133bprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgu133bprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 203750510e51450e1267e08c241151c4
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu133bprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu133plus2.db/meta.yaml b/recipes/bioconductor-hgu133plus2.db/meta.yaml
index 08cb39b045275..cf1fe96b56771 100644
--- a/recipes/bioconductor-hgu133plus2.db/meta.yaml
+++ b/recipes/bioconductor-hgu133plus2.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "hgu133plus2.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 459fcf4880a9eaa25b373c5635fede3d
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu133plus2.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu133plus2barcodevecs/meta.yaml b/recipes/bioconductor-hgu133plus2barcodevecs/meta.yaml
index 22db1c1b61c76..cb5e8dfdb2d01 100644
--- a/recipes/bioconductor-hgu133plus2barcodevecs/meta.yaml
+++ b/recipes/bioconductor-hgu133plus2barcodevecs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "hgu133plus2barcodevecs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: a30a110289e8dff08599c97adb71adb0
+  md5: 624bad8617d806474bc9406dc3c22384
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu133plus2barcodevecs", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu133plus2barcodevecs/post-link.sh b/recipes/bioconductor-hgu133plus2barcodevecs/post-link.sh
index b08192bf7142d..f44c331060ecf 100644
--- a/recipes/bioconductor-hgu133plus2barcodevecs/post-link.sh
+++ b/recipes/bioconductor-hgu133plus2barcodevecs/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "hgu133plus2barcodevecs-1.38.0"
+installBiocDataPackage.sh "hgu133plus2barcodevecs-1.40.0"
diff --git a/recipes/bioconductor-hgu133plus2cdf/meta.yaml b/recipes/bioconductor-hgu133plus2cdf/meta.yaml
index 98627976fb3e1..9e57c07dda204 100644
--- a/recipes/bioconductor-hgu133plus2cdf/meta.yaml
+++ b/recipes/bioconductor-hgu133plus2cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgu133plus2cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 284fef2f0b777d7b53451538ddd53de3
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu133plus2cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu133plus2cellscore/meta.yaml b/recipes/bioconductor-hgu133plus2cellscore/meta.yaml
index b37309c611db0..8d4b60ba2ced3 100644
--- a/recipes/bioconductor-hgu133plus2cellscore/meta.yaml
+++ b/recipes/bioconductor-hgu133plus2cellscore/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "hgu133plus2CellScore" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 348bb596918ca6f6a51d72d20003545c
+  md5: 486b7084ad0056c1031545af9c6dd515
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu133plus2cellscore", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu133plus2cellscore/post-link.sh b/recipes/bioconductor-hgu133plus2cellscore/post-link.sh
index f327ced153ca1..5db37f89ca4fd 100644
--- a/recipes/bioconductor-hgu133plus2cellscore/post-link.sh
+++ b/recipes/bioconductor-hgu133plus2cellscore/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "hgu133plus2cellscore-1.20.0"
+installBiocDataPackage.sh "hgu133plus2cellscore-1.22.0"
diff --git a/recipes/bioconductor-hgu133plus2frmavecs/meta.yaml b/recipes/bioconductor-hgu133plus2frmavecs/meta.yaml
index c749cf9021e82..a4180048a8637 100644
--- a/recipes/bioconductor-hgu133plus2frmavecs/meta.yaml
+++ b/recipes/bioconductor-hgu133plus2frmavecs/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.5.0" %}
 {% set name = "hgu133plus2frmavecs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: a4781cbcccc1ee17dfd16259f1c7bebc
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu133plus2frmavecs", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu133plus2probe/meta.yaml b/recipes/bioconductor-hgu133plus2probe/meta.yaml
index 57d9103819acc..15f9e2c0e4cd0 100644
--- a/recipes/bioconductor-hgu133plus2probe/meta.yaml
+++ b/recipes/bioconductor-hgu133plus2probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgu133plus2probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 7a244787a0269bc72732ac3d830f34dd
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu133plus2probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu219.db/meta.yaml b/recipes/bioconductor-hgu219.db/meta.yaml
index 394a442bf04bf..6207dd4fbfcc9 100644
--- a/recipes/bioconductor-hgu219.db/meta.yaml
+++ b/recipes/bioconductor-hgu219.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "hgu219.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: a4a0fd2ac170a75d8b17618615fcd7a0
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu219.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu219cdf/meta.yaml b/recipes/bioconductor-hgu219cdf/meta.yaml
index 63ab00e91e157..b692201bd81cd 100644
--- a/recipes/bioconductor-hgu219cdf/meta.yaml
+++ b/recipes/bioconductor-hgu219cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgu219cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 157a4280a9de960902260ab18f678949
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu219cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu219probe/meta.yaml b/recipes/bioconductor-hgu219probe/meta.yaml
index 1e63c73163662..ce6e47caba3dd 100644
--- a/recipes/bioconductor-hgu219probe/meta.yaml
+++ b/recipes/bioconductor-hgu219probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgu219probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: c5bb2f7b2e0f8fa89e6a30befaee6497
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu219probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu2beta7/meta.yaml b/recipes/bioconductor-hgu2beta7/meta.yaml
index 1f6449fe5fdfd..e96e80fe95558 100644
--- a/recipes/bioconductor-hgu2beta7/meta.yaml
+++ b/recipes/bioconductor-hgu2beta7/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "hgu2beta7" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 2f1a9cc48f2608678e7349d6671a4949
+  md5: 0643f49d27bf1dd6b73fb9192b23ebaa
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu2beta7", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu2beta7/post-link.sh b/recipes/bioconductor-hgu2beta7/post-link.sh
index 3d43283a70466..344f6120b8df6 100644
--- a/recipes/bioconductor-hgu2beta7/post-link.sh
+++ b/recipes/bioconductor-hgu2beta7/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "hgu2beta7-1.40.0"
+installBiocDataPackage.sh "hgu2beta7-1.42.0"
diff --git a/recipes/bioconductor-hgu95a.db/meta.yaml b/recipes/bioconductor-hgu95a.db/meta.yaml
index c753b74895da7..304c7640fc879 100644
--- a/recipes/bioconductor-hgu95a.db/meta.yaml
+++ b/recipes/bioconductor-hgu95a.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "hgu95a.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b228ec0eded3ba9bccf033c2fff8f7b8
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu95a.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu95acdf/meta.yaml b/recipes/bioconductor-hgu95acdf/meta.yaml
index 5d2431beba4fa..1b49083b8669c 100644
--- a/recipes/bioconductor-hgu95acdf/meta.yaml
+++ b/recipes/bioconductor-hgu95acdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgu95acdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: afc999d77b1532154d45911ad15a5897
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu95acdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu95aprobe/meta.yaml b/recipes/bioconductor-hgu95aprobe/meta.yaml
index 2ccd8e5b546e5..0d469c84c6f9b 100644
--- a/recipes/bioconductor-hgu95aprobe/meta.yaml
+++ b/recipes/bioconductor-hgu95aprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgu95aprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 67d94ecdc1889acc19dafd19d26700a2
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu95aprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu95av2.db/meta.yaml b/recipes/bioconductor-hgu95av2.db/meta.yaml
index 010ebe9638fc3..3ff766aa5fb19 100644
--- a/recipes/bioconductor-hgu95av2.db/meta.yaml
+++ b/recipes/bioconductor-hgu95av2.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "hgu95av2.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 0ada3f3c2507992b94d2daa7de8b7fbf
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu95av2.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu95av2/meta.yaml b/recipes/bioconductor-hgu95av2/meta.yaml
index ef089c5177fb9..78e1d0a7807fd 100644
--- a/recipes/bioconductor-hgu95av2/meta.yaml
+++ b/recipes/bioconductor-hgu95av2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.2.0" %}
 {% set name = "hgu95av2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b92585c0f43e91bd1abd234b9465a6a7
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu95av2", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu95av2cdf/meta.yaml b/recipes/bioconductor-hgu95av2cdf/meta.yaml
index 928d636c24950..11a1128c63fc1 100644
--- a/recipes/bioconductor-hgu95av2cdf/meta.yaml
+++ b/recipes/bioconductor-hgu95av2cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgu95av2cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 026bae2f76433593f75ca6c79bc9a9d0
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu95av2cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu95av2probe/meta.yaml b/recipes/bioconductor-hgu95av2probe/meta.yaml
index 760925c3269eb..8eb701c5659f3 100644
--- a/recipes/bioconductor-hgu95av2probe/meta.yaml
+++ b/recipes/bioconductor-hgu95av2probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgu95av2probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: d3efb56f7e7a264b633fac787a5a2b95
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu95av2probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu95b.db/meta.yaml b/recipes/bioconductor-hgu95b.db/meta.yaml
index 84238ff673fde..ac0f7ed32a448 100644
--- a/recipes/bioconductor-hgu95b.db/meta.yaml
+++ b/recipes/bioconductor-hgu95b.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "hgu95b.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 12334c263cfd9f7dc835762b4661edc1
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu95b.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu95bcdf/meta.yaml b/recipes/bioconductor-hgu95bcdf/meta.yaml
index 0789a97b2b662..32b337096ddfa 100644
--- a/recipes/bioconductor-hgu95bcdf/meta.yaml
+++ b/recipes/bioconductor-hgu95bcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgu95bcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: e6e56b7a107bb2df25b3c25a8191385d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu95bcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu95bprobe/meta.yaml b/recipes/bioconductor-hgu95bprobe/meta.yaml
index 75853474446ae..c651f98a9e74e 100644
--- a/recipes/bioconductor-hgu95bprobe/meta.yaml
+++ b/recipes/bioconductor-hgu95bprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgu95bprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 60dcb57fd402dc24d53ef9390c893cfc
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu95bprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu95c.db/meta.yaml b/recipes/bioconductor-hgu95c.db/meta.yaml
index 2bf3c22c651f2..5a2400c03379f 100644
--- a/recipes/bioconductor-hgu95c.db/meta.yaml
+++ b/recipes/bioconductor-hgu95c.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "hgu95c.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 680cdfc3e63853ace2ec47caa00ded36
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu95c.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu95ccdf/meta.yaml b/recipes/bioconductor-hgu95ccdf/meta.yaml
index 22675144bbd32..1ea680ebb03a3 100644
--- a/recipes/bioconductor-hgu95ccdf/meta.yaml
+++ b/recipes/bioconductor-hgu95ccdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgu95ccdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 976151eac05c320aec7a24397a6b5806
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu95ccdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu95cprobe/meta.yaml b/recipes/bioconductor-hgu95cprobe/meta.yaml
index 6d216269dc104..a111dd5f829b2 100644
--- a/recipes/bioconductor-hgu95cprobe/meta.yaml
+++ b/recipes/bioconductor-hgu95cprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgu95cprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 3fe935a52c70105dc7a214174c946455
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu95cprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu95d.db/meta.yaml b/recipes/bioconductor-hgu95d.db/meta.yaml
index afceca15d1376..50de9e491ea14 100644
--- a/recipes/bioconductor-hgu95d.db/meta.yaml
+++ b/recipes/bioconductor-hgu95d.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "hgu95d.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 90ecf383640f6ab7314fa1babcdd5a0b
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu95d.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu95dcdf/meta.yaml b/recipes/bioconductor-hgu95dcdf/meta.yaml
index 090b3ad17eb89..483baf4b30cfe 100644
--- a/recipes/bioconductor-hgu95dcdf/meta.yaml
+++ b/recipes/bioconductor-hgu95dcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgu95dcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 36e11ff001b1bec3f34ba7c93132ad6f
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu95dcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu95dprobe/meta.yaml b/recipes/bioconductor-hgu95dprobe/meta.yaml
index 1846e53e2baa7..030c64728d67d 100644
--- a/recipes/bioconductor-hgu95dprobe/meta.yaml
+++ b/recipes/bioconductor-hgu95dprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgu95dprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 165ce5029f49fc515b9ee0e6a6a29cb5
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu95dprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu95e.db/meta.yaml b/recipes/bioconductor-hgu95e.db/meta.yaml
index 10cbaa486cf3e..2a6007514b8b7 100644
--- a/recipes/bioconductor-hgu95e.db/meta.yaml
+++ b/recipes/bioconductor-hgu95e.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "hgu95e.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 116bd146279d19d50a7233bc61c22104
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu95e.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu95ecdf/meta.yaml b/recipes/bioconductor-hgu95ecdf/meta.yaml
index 7ec42cf88cbf1..909814914ac7e 100644
--- a/recipes/bioconductor-hgu95ecdf/meta.yaml
+++ b/recipes/bioconductor-hgu95ecdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgu95ecdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: fa27cfff62a38fc51640d797bd628105
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu95ecdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgu95eprobe/meta.yaml b/recipes/bioconductor-hgu95eprobe/meta.yaml
index 12a28fd1e1e2c..e25fb81f9803c 100644
--- a/recipes/bioconductor-hgu95eprobe/meta.yaml
+++ b/recipes/bioconductor-hgu95eprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hgu95eprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 9e5407ab80c5bbb4065484be0b9c6191
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgu95eprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hguatlas13k.db/meta.yaml b/recipes/bioconductor-hguatlas13k.db/meta.yaml
index 82cf7b2b762cb..631974fa66149 100644
--- a/recipes/bioconductor-hguatlas13k.db/meta.yaml
+++ b/recipes/bioconductor-hguatlas13k.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "hguatlas13k.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: ab9ffe1a1de44c0f938129f193e7fb63
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hguatlas13k.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgubeta7.db/meta.yaml b/recipes/bioconductor-hgubeta7.db/meta.yaml
index 15941b6ed04f7..f952f59819473 100644
--- a/recipes/bioconductor-hgubeta7.db/meta.yaml
+++ b/recipes/bioconductor-hgubeta7.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "hgubeta7.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 1b8b065f95d2089985f59f22dcabc824
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgubeta7.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgudkfz31.db/meta.yaml b/recipes/bioconductor-hgudkfz31.db/meta.yaml
index 15bad4e0ba983..797b9e34dc787 100644
--- a/recipes/bioconductor-hgudkfz31.db/meta.yaml
+++ b/recipes/bioconductor-hgudkfz31.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "hguDKFZ31.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: fa3ba493cebdac4253dea8fe5d58452b
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgudkfz31.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgug4100a.db/meta.yaml b/recipes/bioconductor-hgug4100a.db/meta.yaml
index 6e31ffc0fe574..25b4d28578ec5 100644
--- a/recipes/bioconductor-hgug4100a.db/meta.yaml
+++ b/recipes/bioconductor-hgug4100a.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "hgug4100a.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b7856928278a77d71f963410ea4f2376
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgug4100a.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgug4101a.db/meta.yaml b/recipes/bioconductor-hgug4101a.db/meta.yaml
index e95648d842503..bbddbf83684d0 100644
--- a/recipes/bioconductor-hgug4101a.db/meta.yaml
+++ b/recipes/bioconductor-hgug4101a.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "hgug4101a.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: e4731217efbffd05d3ee7eec68ce0aa0
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgug4101a.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgug4110b.db/meta.yaml b/recipes/bioconductor-hgug4110b.db/meta.yaml
index a05d1cd3cc88c..288b0336f7a3f 100644
--- a/recipes/bioconductor-hgug4110b.db/meta.yaml
+++ b/recipes/bioconductor-hgug4110b.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "hgug4110b.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: a9edcdbc121f22d4dec335a64598ff0e
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgug4110b.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgug4111a.db/meta.yaml b/recipes/bioconductor-hgug4111a.db/meta.yaml
index a693fd1e3985a..23c816d0468e7 100644
--- a/recipes/bioconductor-hgug4111a.db/meta.yaml
+++ b/recipes/bioconductor-hgug4111a.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "hgug4111a.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: a5f2c3b463915fa1ab0ca21e6b0f5840
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgug4111a.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgug4112a.db/meta.yaml b/recipes/bioconductor-hgug4112a.db/meta.yaml
index 6c34b11fe0f15..1d650ea7689f3 100644
--- a/recipes/bioconductor-hgug4112a.db/meta.yaml
+++ b/recipes/bioconductor-hgug4112a.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "hgug4112a.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 67ecf8c887e2ebe1941cc51d0f5fb468
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgug4112a.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hgug4845a.db/meta.yaml b/recipes/bioconductor-hgug4845a.db/meta.yaml
index 5417eb330561c..56bdebf753da7 100644
--- a/recipes/bioconductor-hgug4845a.db/meta.yaml
+++ b/recipes/bioconductor-hgug4845a.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.0.3" %}
 {% set name = "hgug4845a.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 46133d7bcb6d8c24c026304e8ddd150d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hgug4845a.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hguqiagenv3.db/meta.yaml b/recipes/bioconductor-hguqiagenv3.db/meta.yaml
index 01608bf04fb8f..a89094655e843 100644
--- a/recipes/bioconductor-hguqiagenv3.db/meta.yaml
+++ b/recipes/bioconductor-hguqiagenv3.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "hguqiagenv3.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 91ebb82e773ff799befdb8921b38e90e
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hguqiagenv3.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hi16cod.db/meta.yaml b/recipes/bioconductor-hi16cod.db/meta.yaml
index f332984279757..6f2d6f8fea470 100644
--- a/recipes/bioconductor-hi16cod.db/meta.yaml
+++ b/recipes/bioconductor-hi16cod.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.4.0" %}
 {% set name = "hi16cod.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: abdc77937e8d37fa5468691376ceb6a5
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hi16cod.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hiannotator/meta.yaml b/recipes/bioconductor-hiannotator/meta.yaml
index 9cdebfe36ac76..2e398493417b3 100644
--- a/recipes/bioconductor-hiannotator/meta.yaml
+++ b/recipes/bioconductor-hiannotator/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "hiAnnotator" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ea7eef5accdcba1b8f0d29b7120bef7e
+  md5: 67e0fbd27bb6f634ccb9912642a2aeb6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hiannotator", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, doParallel, testthat, BiocGenerics, markdown
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-dplyr
     - r-foreach
@@ -31,9 +32,9 @@ requirements:
     - r-iterators
     - r-scales
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-dplyr
     - r-foreach
diff --git a/recipes/bioconductor-hibag/meta.yaml b/recipes/bioconductor-hibag/meta.yaml
index 179a6f0eff2a6..1c32235779499 100644
--- a/recipes/bioconductor-hibag/meta.yaml
+++ b/recipes/bioconductor-hibag/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "HIBAG" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,13 +11,14 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1cef1399370a7c97f74d0c913a1dc390
+  md5: 80772de8231b22269fb6ee5401af8292
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
-# Suggests: parallel, ggplot2, reshape2, gdsfmt, SNPRelate, SeqArray, knitr, markdown, rmarkdown
+  run_exports: '{{ pin_subpackage("bioconductor-hibag", max_pin="x.x") }}'
+# Suggests: parallel, ggplot2, reshape2, gdsfmt, SNPRelate, SeqArray, knitr, markdown, rmarkdown, Rsamtools
 # SystemRequirements: C++11, GNU make
 requirements:
   host:
diff --git a/recipes/bioconductor-hibed/meta.yaml b/recipes/bioconductor-hibed/meta.yaml
new file mode 100644
index 0000000000000..428afabbff047
--- /dev/null
+++ b/recipes/bioconductor-hibed/meta.yaml
@@ -0,0 +1,53 @@
+{% set version = "1.0.0" %}
+{% set name = "HiBED" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 282aec6967013cdaa790ff191e4139b4
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hibed", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: knitr, rmarkdown, testthat, IlluminaHumanMethylation450kmanifest
+requirements:
+  host:
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-flowsorted.blood.epic >=2.6.0,<2.7.0'
+    - 'bioconductor-flowsorted.dlpfc.450k >=1.38.0,<1.39.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-dplyr
+    - r-tibble
+  run:
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-flowsorted.blood.epic >=2.6.0,<2.7.0'
+    - 'bioconductor-flowsorted.dlpfc.450k >=1.38.0,<1.39.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-dplyr
+    - r-tibble
+    - curl
+    - 'bioconductor-data-packages >=20231203'
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/html/{{ name }}.html'
+  license: GPL-3
+  summary: HiBED
+  description: 'Hierarchical deconvolution for extensive cell type resolution in the human brain using DNA methylation. The HiBED deconvolution estimates proportions up to 7 cell types (GABAergic neurons, glutamatergic neurons, astrocytes, microglial cells, oligodendrocytes, endothelial cells, and stromal cells) in bulk brain tissues.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-hibed/post-link.sh b/recipes/bioconductor-hibed/post-link.sh
new file mode 100644
index 0000000000000..f600caeca45ee
--- /dev/null
+++ b/recipes/bioconductor-hibed/post-link.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+installBiocDataPackage.sh "hibed-1.0.0"
diff --git a/recipes/bioconductor-hibed/pre-unlink.sh b/recipes/bioconductor-hibed/pre-unlink.sh
new file mode 100644
index 0000000000000..6d37acd5139b7
--- /dev/null
+++ b/recipes/bioconductor-hibed/pre-unlink.sh
@@ -0,0 +1 @@
+R CMD REMOVE --library=$PREFIX/lib/R/library/ HiBED
diff --git a/recipes/bioconductor-hicbricks/meta.yaml b/recipes/bioconductor-hicbricks/meta.yaml
index 62562b1137691..929d6db889cb6 100644
--- a/recipes/bioconductor-hicbricks/meta.yaml
+++ b/recipes/bioconductor-hicbricks/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "HiCBricks" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 96079aa0b99e8e59f4131ca070d4b978
+  md5: 1c92df374e0660e328cbf53f181afd61
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hicbricks", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-curl
     - r-data.table
@@ -43,12 +44,12 @@ requirements:
     - r-tibble
     - r-viridis
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-curl
     - r-data.table
diff --git a/recipes/bioconductor-hiccompare/meta.yaml b/recipes/bioconductor-hiccompare/meta.yaml
index 03eff48770c1c..2ad1ed7f62ae8 100644
--- a/recipes/bioconductor-hiccompare/meta.yaml
+++ b/recipes/bioconductor-hiccompare/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.1" %}
+{% set version = "1.24.0" %}
 {% set name = "HiCcompare" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 67b8090713c4a7bb88e2cb00a8de8088
+  md5: 081a94597115ed9f99e23930935648dd
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hiccompare", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, multiHiCcompare
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -37,12 +38,12 @@ requirements:
     - r-mgcv
     - r-pheatmap
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-dplyr
diff --git a/recipes/bioconductor-hicdatahumanimr90/meta.yaml b/recipes/bioconductor-hicdatahumanimr90/meta.yaml
index 8867f1b1be109..f9a4a366087d4 100644
--- a/recipes/bioconductor-hicdatahumanimr90/meta.yaml
+++ b/recipes/bioconductor-hicdatahumanimr90/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "HiCDataHumanIMR90" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8b6b0a8e4ccf7bd132a94748c2678be4
+  md5: 02854f68384130b0bcd3d0f84d94b856
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hicdatahumanimr90", max_pin="x.x") }}'
   noarch: generic
 # Suggests: HiTC
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hicdatahumanimr90/post-link.sh b/recipes/bioconductor-hicdatahumanimr90/post-link.sh
index 2cd37706644ae..5079a3784185d 100644
--- a/recipes/bioconductor-hicdatahumanimr90/post-link.sh
+++ b/recipes/bioconductor-hicdatahumanimr90/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "hicdatahumanimr90-1.20.0"
+installBiocDataPackage.sh "hicdatahumanimr90-1.22.0"
diff --git a/recipes/bioconductor-hicdatalymphoblast/meta.yaml b/recipes/bioconductor-hicdatalymphoblast/meta.yaml
index afbbac6b1b5bb..36a2e897eb980 100644
--- a/recipes/bioconductor-hicdatalymphoblast/meta.yaml
+++ b/recipes/bioconductor-hicdatalymphoblast/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "HiCDataLymphoblast" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f43877109c87896da3954f156798d19f
+  md5: 4e51d696b30a37414375e6987c7ab59c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hicdatalymphoblast", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ShortRead
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hicdatalymphoblast/post-link.sh b/recipes/bioconductor-hicdatalymphoblast/post-link.sh
index 8012f2140899e..acbb04bef68ba 100644
--- a/recipes/bioconductor-hicdatalymphoblast/post-link.sh
+++ b/recipes/bioconductor-hicdatalymphoblast/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "hicdatalymphoblast-1.36.0"
+installBiocDataPackage.sh "hicdatalymphoblast-1.38.0"
diff --git a/recipes/bioconductor-hicdcplus/meta.yaml b/recipes/bioconductor-hicdcplus/meta.yaml
index a0cc479209923..e014d6b12ff12 100644
--- a/recipes/bioconductor-hicdcplus/meta.yaml
+++ b/recipes/bioconductor-hicdcplus/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "HiCDCPlus" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 14987ba2a7f97050a3ec2cc233edc3fd
+  md5: d129ae6d6c11f6f92e52399c46754b1f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hicdcplus", max_pin="x.x") }}'
 # Suggests: BSgenome.Mmusculus.UCSC.mm9, BSgenome.Mmusculus.UCSC.mm10, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg38, RUnit, BiocGenerics, knitr, rmarkdown, HiTC, DESeq2, Matrix, BiocFileCache, rappdirs
 # SystemRequirements: JRE 8+
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicinteractions >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicinteractions >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-bbmle
     - r-data.table
@@ -44,15 +45,15 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicinteractions >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicinteractions >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-bbmle
     - r-data.table
diff --git a/recipes/bioconductor-hicdoc/meta.yaml b/recipes/bioconductor-hicdoc/meta.yaml
index f6b88458d963c..4fc805acafb41 100644
--- a/recipes/bioconductor-hicdoc/meta.yaml
+++ b/recipes/bioconductor-hicdoc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "HiCDOC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d250c9afdc0cba742586f5202a6f54c1
+  md5: 334df180a7e5e2851bbf6724e8537ffd
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
-# Suggests: knitr, rmarkdown, testthat, BiocStyle, BiocManager
+  run_exports: '{{ pin_subpackage("bioconductor-hicdoc", max_pin="x.x") }}'
+# Suggests: knitr, rmarkdown, testthat, BiocStyle, BiocManager, rhdf5
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-multihiccompare >=1.18.0,<1.19.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-multihiccompare >=1.20.0,<1.21.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
+    - r-cowplot
     - r-data.table
-    - r-ggextra
     - r-ggplot2
-    - r-ggpubr
     - r-gridextra
     - r-gtools
     - r-pbapply
@@ -43,21 +42,19 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-multihiccompare >=1.18.0,<1.19.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-multihiccompare >=1.20.0,<1.21.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
+    - r-cowplot
     - r-data.table
-    - r-ggextra
     - r-ggplot2
-    - r-ggpubr
     - r-gridextra
     - r-gtools
     - r-pbapply
@@ -71,8 +68,8 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'LGPL (>= 3)'
+  license: 'file LICENSE'
   summary: 'A/B compartment detection and differential analysis'
   description: 'HiCDOC normalizes intrachromosomal Hi-C matrices, uses unsupervised learning to predict A/B compartments from multiple replicates, and detects significant compartment changes between experiment conditions. It provides a collection of functions assembled into a pipeline to filter and normalize the data, predict the compartments and visualize the results. It accepts several type of data: tabular `.tsv` files, Cooler `.cool` or `.mcool` files, Juicer `.hic` files or HiC-Pro `.matrix` and `.bed` files.'
-  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/LGPL-3'
+  license_file: LICENSE
 
diff --git a/recipes/bioconductor-hicexperiment/meta.yaml b/recipes/bioconductor-hicexperiment/meta.yaml
index 564b6ffd902fe..e0267b602fd7d 100644
--- a/recipes/bioconductor-hicexperiment/meta.yaml
+++ b/recipes/bioconductor-hicexperiment/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "HiCExperiment" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,40 +11,41 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9208ad11b1c8c4b78cfd51e1f02c0c6e
+  md5: 98efc0440886cc84faef975a12f290a0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hicexperiment", max_pin="x.x") }}'
   noarch: generic
 # Suggests: HiContacts, HiContactsData, BiocFileCache, rtracklayer, testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocio >=1.10.0,<1.11.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocio >=1.12.0,<1.13.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-matrix
     - r-strawr
     - r-vroom
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocio >=1.10.0,<1.11.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocio >=1.12.0,<1.13.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-matrix
diff --git a/recipes/bioconductor-hicontacts/meta.yaml b/recipes/bioconductor-hicontacts/meta.yaml
index 561198fdc347d..29ba194cc6150 100644
--- a/recipes/bioconductor-hicontacts/meta.yaml
+++ b/recipes/bioconductor-hicontacts/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "HiContacts" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 023fb0be166964d39ef76d52646605b9
+  md5: f7f7341e5b4cbfcd13b04fadd9c472c7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hicontacts", max_pin="x.x") }}'
   noarch: generic
 # Suggests: HiContactsData, rtracklayer, GenomicFeatures, Biostrings, BSgenome.Scerevisiae.UCSC.sacCer3, WGCNA, Rfast, terra, patchwork, testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocio >=1.10.0,<1.11.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hicexperiment >=1.0.0,<1.1.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocio >=1.12.0,<1.13.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hicexperiment >=1.2.0,<1.3.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -43,16 +44,16 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocio >=1.10.0,<1.11.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hicexperiment >=1.0.0,<1.1.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocio >=1.12.0,<1.13.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hicexperiment >=1.2.0,<1.3.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-hicontactsdata/meta.yaml b/recipes/bioconductor-hicontactsdata/meta.yaml
index 0cc453c74a918..02887a5d7f1f6 100644
--- a/recipes/bioconductor-hicontactsdata/meta.yaml
+++ b/recipes/bioconductor-hicontactsdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "HiContactsData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8d406482f89b932de475c12470bc8ef2
+  md5: bcd518f48342168f7a814a442cf9564c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hicontactsdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, methods, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hicontactsdata/post-link.sh b/recipes/bioconductor-hicontactsdata/post-link.sh
index 5d68ca935f0be..7b88fae0e188f 100644
--- a/recipes/bioconductor-hicontactsdata/post-link.sh
+++ b/recipes/bioconductor-hicontactsdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "hicontactsdata-1.2.0"
+installBiocDataPackage.sh "hicontactsdata-1.4.0"
diff --git a/recipes/bioconductor-hicool/meta.yaml b/recipes/bioconductor-hicool/meta.yaml
index 317fa4a355f3a..e83c1ddf394de 100644
--- a/recipes/bioconductor-hicool/meta.yaml
+++ b/recipes/bioconductor-hicool/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "HiCool" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 85a6824de7561e4879ae698959606ae3
+  md5: 04aa2ef16336d5c43fc0a02291ba7887
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hicool", max_pin="x.x") }}'
   noarch: generic
 # Suggests: HiContacts, HiContactsData, AnnotationHub, BiocFileCache, BiocStyle, testthat, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-biocio >=1.10.0,<1.11.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hicexperiment >=1.0.0,<1.1.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-biocio >=1.12.0,<1.13.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hicexperiment >=1.2.0,<1.3.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-plotly
@@ -38,13 +39,13 @@ requirements:
     - r-stringr
     - r-vroom
   run:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-biocio >=1.10.0,<1.11.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hicexperiment >=1.0.0,<1.1.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-biocio >=1.12.0,<1.13.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hicexperiment >=1.2.0,<1.3.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-plotly
diff --git a/recipes/bioconductor-hicvenndiagram/build.sh b/recipes/bioconductor-hicvenndiagram/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-hicvenndiagram/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-hicvenndiagram/meta.yaml b/recipes/bioconductor-hicvenndiagram/meta.yaml
new file mode 100644
index 0000000000000..1af9811467c2e
--- /dev/null
+++ b/recipes/bioconductor-hicvenndiagram/meta.yaml
@@ -0,0 +1,55 @@
+{% set version = "1.0.0" %}
+{% set name = "hicVennDiagram" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 11577b64cc67b69e4b9d712a76cd3310
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hicvenndiagram", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, knitr, rmarkdown, testthat, GenomicRanges, ChIPpeakAnno, grid
+requirements:
+  host:
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - r-base
+    - r-complexupset
+    - r-eulerr
+    - r-ggplot2
+    - r-htmlwidgets
+    - r-reshape2
+    - r-svglite
+  run:
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - r-base
+    - r-complexupset
+    - r-eulerr
+    - r-ggplot2
+    - r-htmlwidgets
+    - r-reshape2
+    - r-svglite
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'Venn Diagram for genomic interaction data'
+  description: 'A package to generate high-resolution Venn and Upset plots for genomic interaction data from HiC, ChIA-PET, HiChIP, PLAC-Seq, Hi-TrAC, HiCAR and etc. The package generates plots specifically crafted to eliminate the deceptive visual representation caused by the counts method.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-hiergwas/meta.yaml b/recipes/bioconductor-hiergwas/meta.yaml
index b41f1c2b2abd5..917a0f7876b4a 100644
--- a/recipes/bioconductor-hiergwas/meta.yaml
+++ b/recipes/bioconductor-hiergwas/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "hierGWAS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 45c3d0bd8020ffaecf28ef7286a7a576
+  md5: 9f15cfa27c8d57b818fc7913d8a9093b
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hiergwas", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, RUnit, MASS
 requirements:
diff --git a/recipes/bioconductor-hierinf/meta.yaml b/recipes/bioconductor-hierinf/meta.yaml
index d65f0760094db..b55d1417ca221 100644
--- a/recipes/bioconductor-hierinf/meta.yaml
+++ b/recipes/bioconductor-hierinf/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "hierinf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 8798721587604faf688e4c1b508d672f
+  md5: 44446a50b3747865eadceabe415ce6f5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hierinf", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, MASS, testthat
 requirements:
diff --git a/recipes/bioconductor-highlyreplicatedrnaseq/meta.yaml b/recipes/bioconductor-highlyreplicatedrnaseq/meta.yaml
index 3567a002b6c79..936d3d703dbea 100644
--- a/recipes/bioconductor-highlyreplicatedrnaseq/meta.yaml
+++ b/recipes/bioconductor-highlyreplicatedrnaseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "HighlyReplicatedRNASeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b5773c61f0e87d562b2c18aec8992689
+  md5: a397cddffb2dfea70943930b992ea7c0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-highlyreplicatedrnaseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, BiocFileCache, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-highlyreplicatedrnaseq/post-link.sh b/recipes/bioconductor-highlyreplicatedrnaseq/post-link.sh
index f6a1f5964f310..fdd22acfec305 100644
--- a/recipes/bioconductor-highlyreplicatedrnaseq/post-link.sh
+++ b/recipes/bioconductor-highlyreplicatedrnaseq/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "highlyreplicatedrnaseq-1.12.0"
+installBiocDataPackage.sh "highlyreplicatedrnaseq-1.14.0"
diff --git a/recipes/bioconductor-hiiragi2013/meta.yaml b/recipes/bioconductor-hiiragi2013/meta.yaml
index c674fc61ef82e..1db7f4d8b615d 100644
--- a/recipes/bioconductor-hiiragi2013/meta.yaml
+++ b/recipes/bioconductor-hiiragi2013/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "Hiiragi2013" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5e1b258226d9b83620113705d7328537
+  md5: dde13f333fe218976f71b626ed5eefa4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hiiragi2013", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ArrayExpress, BiocStyle
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-geneplotter >=1.78.0,<1.79.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-geneplotter >=1.80.0,<1.81.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
     - 'bioconductor-mouse4302.db >=3.13.0,<3.14.0'
     - r-base
     - r-boot
@@ -39,11 +40,11 @@ requirements:
     - r-rcolorbrewer
     - r-xtable
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-geneplotter >=1.78.0,<1.79.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-geneplotter >=1.80.0,<1.81.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
     - 'bioconductor-mouse4302.db >=3.13.0,<3.14.0'
     - r-base
     - r-boot
@@ -57,7 +58,7 @@ requirements:
     - r-rcolorbrewer
     - r-xtable
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hiiragi2013/post-link.sh b/recipes/bioconductor-hiiragi2013/post-link.sh
index 54941404046eb..6c78d22253936 100644
--- a/recipes/bioconductor-hiiragi2013/post-link.sh
+++ b/recipes/bioconductor-hiiragi2013/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "hiiragi2013-1.36.0"
+installBiocDataPackage.sh "hiiragi2013-1.38.0"
diff --git a/recipes/bioconductor-hilbertcurve/meta.yaml b/recipes/bioconductor-hilbertcurve/meta.yaml
index a798fd8a3c838..f707d6bb5a83d 100644
--- a/recipes/bioconductor-hilbertcurve/meta.yaml
+++ b/recipes/bioconductor-hilbertcurve/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "HilbertCurve" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9ef390a5043853c3354d9e42c80b07c6
+  md5: 97eed8a87d8bb062c5d0b900823f6bcc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hilbertcurve", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat (>= 1.0.0), ComplexHeatmap (>= 1.99.0), markdown, RColorBrewer, RCurl, GetoptLong, rmarkdown
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hilbertvis >=1.58.0,<1.59.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hilbertvis >=1.60.0,<1.61.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - 'r-circlize >=0.3.3'
     - r-png
     - r-polylabelr
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hilbertvis >=1.58.0,<1.59.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hilbertvis >=1.60.0,<1.61.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - 'r-circlize >=0.3.3'
     - r-png
diff --git a/recipes/bioconductor-hilbertvis/meta.yaml b/recipes/bioconductor-hilbertvis/meta.yaml
index 451f5b82abc9f..242e87630060c 100644
--- a/recipes/bioconductor-hilbertvis/meta.yaml
+++ b/recipes/bioconductor-hilbertvis/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.58.0" %}
+{% set version = "1.60.0" %}
 {% set name = "HilbertVis" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: beb6450c2b3c3d94e39eb524d45afe67
+  md5: b30abc9c50034b41daf1399031d657e3
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hilbertvis", max_pin="x.x") }}'
 # Suggests: IRanges, EBImage
 requirements:
   host:
@@ -40,6 +41,8 @@ about:
   description: 'Functions to visualize long vectors of integer data by means of Hilbert curves'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:hilbertvis
     - doi:10.1093/bioinformatics/btp152
diff --git a/recipes/bioconductor-hilbertvisgui/meta.yaml b/recipes/bioconductor-hilbertvisgui/meta.yaml
index 48b6967bdc1f3..4f51df3df8f16 100644
--- a/recipes/bioconductor-hilbertvisgui/meta.yaml
+++ b/recipes/bioconductor-hilbertvisgui/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.58.0" %}
+{% set version = "1.60.0" %}
 {% set name = "HilbertVisGUI" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 136f8bed06155ff4bb34296d1badeeaf
+  md5: e9e6a2cce82ff0dfcf0828ae7d123537
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hilbertvisgui", max_pin="x.x") }}'
 # Suggests: lattice, IRanges
 # SystemRequirements: gtkmm-2.4, GNU make
 requirements:
   host:
-    - 'bioconductor-hilbertvis >=1.58.0,<1.59.0'
+    - 'bioconductor-hilbertvis >=1.60.0,<1.61.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-hilbertvis >=1.58.0,<1.59.0'
+    - 'bioconductor-hilbertvis >=1.60.0,<1.61.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-hilda/meta.yaml b/recipes/bioconductor-hilda/meta.yaml
index c033529d0324a..903151efa8394 100644
--- a/recipes/bioconductor-hilda/meta.yaml
+++ b/recipes/bioconductor-hilda/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "HiLDA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 049c4b0dd5f94cdfe518adce6ea1a06b
+  md5: e1961cfe72082b160cafb7bed5376673
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hilda", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, testthat, BiocStyle
 # SystemRequirements: JAGS 4.0.0
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-abind
     - r-base
     - r-cowplot
@@ -41,14 +42,14 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-abind
     - r-base
     - r-cowplot
diff --git a/recipes/bioconductor-hipathia/meta.yaml b/recipes/bioconductor-hipathia/meta.yaml
index 2b581de926e97..60ebebd0e0391 100644
--- a/recipes/bioconductor-hipathia/meta.yaml
+++ b/recipes/bioconductor-hipathia/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.0.2" %}
+{% set version = "3.2.0" %}
 {% set name = "hipathia" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c860da6e2d2c33a8d0d95fb98937e84f
+  md5: 819d2eecca55d3d4708934bbe69e82a7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hipathia", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-coin
     - r-dplyr
@@ -41,13 +42,13 @@ requirements:
     - r-tibble
     - r-visnetwork
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-coin
     - r-dplyr
diff --git a/recipes/bioconductor-hippo/meta.yaml b/recipes/bioconductor-hippo/meta.yaml
index 80bf3cdc252fc..6daf28263c519 100644
--- a/recipes/bioconductor-hippo/meta.yaml
+++ b/recipes/bioconductor-hippo/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "HIPPO" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9bdc02f89b2c3955b27e6b1f88c56009
+  md5: 6c249e5f8b3f2a0622642c945e8d0566
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hippo", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -35,7 +36,7 @@ requirements:
     - r-rtsne
     - r-umap
   run:
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-hireadsprocessor/meta.yaml b/recipes/bioconductor-hireadsprocessor/meta.yaml
index a8a127edfc54f..fa5d6a94b7947 100644
--- a/recipes/bioconductor-hireadsprocessor/meta.yaml
+++ b/recipes/bioconductor-hireadsprocessor/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "hiReadsProcessor" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5784280fe7e882437b725ade4fa5be3b
+  md5: 8a194956515b40e5dc75f90cafdea5c6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hireadsprocessor", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, markdown
 # SystemRequirements: BLAT, UCSC hg18 in 2bit format for BLAT
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hiannotator >=1.34.0,<1.35.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hiannotator >=1.36.0,<1.37.0'
     - r-base
     - r-dplyr
     - r-readxl
     - r-soniclength
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hiannotator >=1.34.0,<1.35.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hiannotator >=1.36.0,<1.37.0'
     - r-base
     - r-dplyr
     - r-readxl
diff --git a/recipes/bioconductor-hireewas/meta.yaml b/recipes/bioconductor-hireewas/meta.yaml
index 87c98011e2791..88bfdf68e2cc3 100644
--- a/recipes/bioconductor-hireewas/meta.yaml
+++ b/recipes/bioconductor-hireewas/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "HIREewas" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 68ec415918f2959671fd619fb8fbcf90
+  md5: fd57bb11c16b2d194d7950ce0d918899
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hireewas", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, BiocGenerics
 requirements:
   host:
diff --git a/recipes/bioconductor-hitc/meta.yaml b/recipes/bioconductor-hitc/meta.yaml
index 98920c992a893..6d1346745d845 100644
--- a/recipes/bioconductor-hitc/meta.yaml
+++ b/recipes/bioconductor-hitc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.44.0" %}
+{% set version = "1.46.0" %}
 {% set name = "HiTC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5dceec926506e3c6a416c44671e5cb5f
+  md5: e530516c0386e2e9bb6ff9afbed5893f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hitc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, HiCDataHumanIMR90
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-matrix
     - r-rcolorbrewer
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-matrix
     - r-rcolorbrewer
diff --git a/recipes/bioconductor-hivcdnavantwout03/meta.yaml b/recipes/bioconductor-hivcdnavantwout03/meta.yaml
index 6602f1bbdecd6..9f5b6824060b5 100644
--- a/recipes/bioconductor-hivcdnavantwout03/meta.yaml
+++ b/recipes/bioconductor-hivcdnavantwout03/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "HIVcDNAvantWout03" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 349ef6469ce73790078ba4b5d5206856
+  md5: 4936f53bb66cdf1983a8bcbcd667a188
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hivcdnavantwout03", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hivcdnavantwout03/post-link.sh b/recipes/bioconductor-hivcdnavantwout03/post-link.sh
index 4e772af309820..0eb40797b7714 100644
--- a/recipes/bioconductor-hivcdnavantwout03/post-link.sh
+++ b/recipes/bioconductor-hivcdnavantwout03/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "hivcdnavantwout03-1.40.0"
+installBiocDataPackage.sh "hivcdnavantwout03-1.42.0"
diff --git a/recipes/bioconductor-hivprtplus2cdf/meta.yaml b/recipes/bioconductor-hivprtplus2cdf/meta.yaml
index b28324248c239..31d0377db8de7 100644
--- a/recipes/bioconductor-hivprtplus2cdf/meta.yaml
+++ b/recipes/bioconductor-hivprtplus2cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hivprtplus2cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 143d9c2f5f328786bae7bb8dc4daf261
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hivprtplus2cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hmdbquery/meta.yaml b/recipes/bioconductor-hmdbquery/meta.yaml
index 47353fc6f4f3d..a34079bd13563 100644
--- a/recipes/bioconductor-hmdbquery/meta.yaml
+++ b/recipes/bioconductor-hmdbquery/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "hmdbQuery" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 07cb71866c0245628fece30b4d78c20c
+  md5: 32b8de26d3b369730bdd7c734da1be06
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hmdbquery", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, annotate, gwascat, testthat, rmarkdown
 requirements:
   host:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-xml
   run:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-xml
 test:
diff --git a/recipes/bioconductor-hmmcopy/meta.yaml b/recipes/bioconductor-hmmcopy/meta.yaml
index ed6c77c7597a7..6e18042be1c07 100644
--- a/recipes/bioconductor-hmmcopy/meta.yaml
+++ b/recipes/bioconductor-hmmcopy/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "HMMcopy" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a987a0438c7464de68cbebfae70d0c21
+  md5: 4785371e1642cd191330693396010a6e
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hmmcopy", max_pin="x.x") }}'
 requirements:
   host:
     - r-base
@@ -39,6 +40,8 @@ about:
   description: 'Corrects GC and mappability biases for readcounts (i.e. coverage) in non-overlapping windows of fixed length for single whole genome samples, yielding a rough estimate of copy number for furthur analysis.  Designed for rapid correction of high coverage whole genome tumour and normal samples.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:hmmcopy
     - doi:10.1038/nmeth.3252
diff --git a/recipes/bioconductor-hmp16sdata/meta.yaml b/recipes/bioconductor-hmp16sdata/meta.yaml
index 71a98fda6e53f..36851b9076422 100644
--- a/recipes/bioconductor-hmp16sdata/meta.yaml
+++ b/recipes/bioconductor-hmp16sdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "HMP16SData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a62c1eec817f876e015ee98ab937dfc6
+  md5: a137f917000e15acffca9bb0baac8fbb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hmp16sdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biobase, BiocCheck, BiocManager, BiocStyle, circlize, cowplot, dendextend, devtools, ggplot2, gridExtra, haven, phyloseq, rmarkdown, roxygen2, stats, testthat, tidyr
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - r-dplyr
@@ -35,10 +36,10 @@ requirements:
     - r-stringr
     - r-tibble
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - r-dplyr
@@ -49,7 +50,7 @@ requirements:
     - r-stringr
     - r-tibble
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hmp16sdata/post-link.sh b/recipes/bioconductor-hmp16sdata/post-link.sh
index 53146c48205ef..43a01f6fffd29 100644
--- a/recipes/bioconductor-hmp16sdata/post-link.sh
+++ b/recipes/bioconductor-hmp16sdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "hmp16sdata-1.20.0"
+installBiocDataPackage.sh "hmp16sdata-1.22.0"
diff --git a/recipes/bioconductor-hmp2data/meta.yaml b/recipes/bioconductor-hmp2data/meta.yaml
index 6cb82db03492c..0f1a1a16733fa 100644
--- a/recipes/bioconductor-hmp2data/meta.yaml
+++ b/recipes/bioconductor-hmp2data/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "HMP2Data" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ff1bf8c6b78ebe9c09578c775c35a54a
+  md5: f334416386d2c1af677494e1fd5743d6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hmp2data", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biobase, BiocCheck, BiocManager, BiocStyle, cowplot, devtools, ggplot2, gridExtra, haven, rmarkdown, roxygen2, stats, testthat, tibble, UpSetR
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - r-data.table
@@ -36,12 +37,12 @@ requirements:
     - r-magrittr
     - r-readr
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - r-data.table
@@ -51,7 +52,7 @@ requirements:
     - r-magrittr
     - r-readr
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hmp2data/post-link.sh b/recipes/bioconductor-hmp2data/post-link.sh
index 4529a31a1c7c9..22fac5c1ff254 100644
--- a/recipes/bioconductor-hmp2data/post-link.sh
+++ b/recipes/bioconductor-hmp2data/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "hmp2data-1.14.0"
+installBiocDataPackage.sh "hmp2data-1.16.0"
diff --git a/recipes/bioconductor-homo.sapiens/meta.yaml b/recipes/bioconductor-homo.sapiens/meta.yaml
index e9410c2285835..4f0fdece86a13 100644
--- a/recipes/bioconductor-homo.sapiens/meta.yaml
+++ b/recipes/bioconductor-homo.sapiens/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.1" %}
 {% set name = "Homo.sapiens" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,30 +13,31 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 653b60cfcdaefd171729115cd629b585
 build:
-  number: 15
+  number: 16
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-homo.sapiens", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-organismdbi >=1.42.0,<1.43.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-organismdbi >=1.44.0,<1.45.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-organismdbi >=1.42.0,<1.43.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-organismdbi >=1.44.0,<1.45.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hoodscanr/build.sh b/recipes/bioconductor-hoodscanr/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-hoodscanr/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-hoodscanr/meta.yaml b/recipes/bioconductor-hoodscanr/meta.yaml
new file mode 100644
index 0000000000000..61cbf0679547a
--- /dev/null
+++ b/recipes/bioconductor-hoodscanr/meta.yaml
@@ -0,0 +1,64 @@
+{% set version = "1.0.0" %}
+{% set name = "hoodscanR" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: c5ac598990d1f80bfa526c576abc8d84
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hoodscanr", max_pin="x.x") }}'
+# Suggests: testthat (>= 3.0.0), BiocStyle
+requirements:
+  host:
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-circlize
+    - r-ggplot2
+    - r-knitr
+    - r-rann
+    - 'r-rcpp >=1.0.9'
+    - r-rlang
+    - r-rmarkdown
+    - r-scico
+    - libblas
+    - liblapack
+  run:
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-circlize
+    - r-ggplot2
+    - r-knitr
+    - r-rann
+    - 'r-rcpp >=1.0.9'
+    - r-rlang
+    - r-rmarkdown
+    - r-scico
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - make
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'GPL-3 + file LICENSE'
+  summary: 'Spatial cellular neighbourhood scanning in R'
+  description: 'hoodscanR is an user-friendly R package providing functions to assist cellular neighborhood analysis of any spatial transcriptomics data with single-cell resolution. All functions in the package are built based on the SpatialExperiment object, allowing integration into various spatial transcriptomics-related packages from Bioconductor. The package can result in cell-level neighborhood annotation output, along with funtions to perform neighborhood colocalization analysis and neighborhood-based cell clustering.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-hopach/meta.yaml b/recipes/bioconductor-hopach/meta.yaml
index da2f11af0c567..e515605dc2dc5 100644
--- a/recipes/bioconductor-hopach/meta.yaml
+++ b/recipes/bioconductor-hopach/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.60.0" %}
+{% set version = "2.62.0" %}
 {% set name = "hopach" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 467cdea6eebc9401118e603250a9bd49
+  md5: 0310e9a4e3a34dfe2bb4edf0dbb38b16
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hopach", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-cluster
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-cluster
   build:
diff --git a/recipes/bioconductor-hpaanalyze/meta.yaml b/recipes/bioconductor-hpaanalyze/meta.yaml
index 29f4ddb00001f..73545f1379178 100644
--- a/recipes/bioconductor-hpaanalyze/meta.yaml
+++ b/recipes/bioconductor-hpaanalyze/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.1" %}
+{% set version = "1.20.0" %}
 {% set name = "HPAanalyze" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ebdbe83c9d26b640324bb4274e06c457
+  md5: 0916d6c86a23a3c136b3d0f1de2a25f4
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hpaanalyze", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, markdown, devtools, BiocStyle
 requirements:
diff --git a/recipes/bioconductor-hpannot/meta.yaml b/recipes/bioconductor-hpannot/meta.yaml
index 44551ef27ed75..0f3297ff458a5 100644
--- a/recipes/bioconductor-hpannot/meta.yaml
+++ b/recipes/bioconductor-hpannot/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.1.0" %}
 {% set name = "hpAnnot" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: fbc94a00b0f33b41bc5ff53fbe060663
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hpannot", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hpar/meta.yaml b/recipes/bioconductor-hpar/meta.yaml
index e03e05050d958..a49dd41f591c0 100644
--- a/recipes/bioconductor-hpar/meta.yaml
+++ b/recipes/bioconductor-hpar/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "hpar" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f2a2355b84c7204ab11bec266f8b63c0
+  md5: f970b068a2112cd8bf1a8dfb7d29d86a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hpar", max_pin="x.x") }}'
   noarch: generic
 # Suggests: org.Hs.eg.db, GO.db, AnnotationDbi, knitr, BiocStyle, testthat, rmarkdown, dplyr, DT
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-hpip/meta.yaml b/recipes/bioconductor-hpip/meta.yaml
index 4149d4c6262cf..a97924166d6b7 100644
--- a/recipes/bioconductor-hpip/meta.yaml
+++ b/recipes/bioconductor-hpip/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "HPiP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 90bdbe4811dfb9bad8305ce85a67810f
+  md5: cbf5bf4735e100b22b184490854f8427
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hpip", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, colorspace, e1071, kernlab, ranger, SummarizedExperiment, Biostrings, randomForest, gprofiler2, gridExtra, ggthemes, BiocStyle, BiocGenerics, RUnit, tools, knitr
 requirements:
diff --git a/recipes/bioconductor-hpo.db/meta.yaml b/recipes/bioconductor-hpo.db/meta.yaml
new file mode 100644
index 0000000000000..64e2223e94fa9
--- /dev/null
+++ b/recipes/bioconductor-hpo.db/meta.yaml
@@ -0,0 +1,46 @@
+{% set version = "0.99.2" %}
+{% set name = "HPO.db" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 977cfb31ff344c58fd2dd0a2c6b765ab
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hpo.db", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: rmarkdown, knitr, testthat (>= 3.0.0)
+requirements:
+  host:
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - r-base
+    - r-dbi
+  run:
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - r-base
+    - r-dbi
+    - curl
+    - 'bioconductor-data-packages >=20231203'
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'A set of annotation maps describing the entire Human Phenotype Ontology'
+  description: 'Human Phenotype Ontology (HPO) was developed to create a consistent description of gene products with disease perspectives, and is essential for supporting functional genomics in disease context. Accurate disease descriptions can discover new relationships between genes and disease, and new functions for previous uncharacteried genes and alleles.We have developed the [DOSE](https://bioconductor.org/packages/DOSE/) package for semantic similarity analysis and disease enrichment analysis, and `DOSE` import an Bioconductor package ''DO.db'' to get the relationship(such as parent and child) between MPO terms. But `DO.db` hasn''t been updated for years, and a lot of semantic information is [missing](https://github.com/YuLab-SMU/DOSE/issues/57). So we developed the new package `HPO.db` for Human Human Phenotype Ontology annotation.'
+
diff --git a/recipes/bioconductor-hpo.db/post-link.sh b/recipes/bioconductor-hpo.db/post-link.sh
new file mode 100644
index 0000000000000..4ac86e1be7109
--- /dev/null
+++ b/recipes/bioconductor-hpo.db/post-link.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+installBiocDataPackage.sh "hpo.db-0.99.2"
diff --git a/recipes/bioconductor-hpo.db/pre-unlink.sh b/recipes/bioconductor-hpo.db/pre-unlink.sh
new file mode 100644
index 0000000000000..9a0102a6c36f3
--- /dev/null
+++ b/recipes/bioconductor-hpo.db/pre-unlink.sh
@@ -0,0 +1 @@
+R CMD REMOVE --library=$PREFIX/lib/R/library/ HPO.db
diff --git a/recipes/bioconductor-hs25kresogen.db/meta.yaml b/recipes/bioconductor-hs25kresogen.db/meta.yaml
index 8483c7419e451..6c8d7424a4441 100644
--- a/recipes/bioconductor-hs25kresogen.db/meta.yaml
+++ b/recipes/bioconductor-hs25kresogen.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.5.0" %}
 {% set name = "hs25kresogen.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: a3800d072ce0e5f6f5d8299538b99cca
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hs25kresogen.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hs6ug171.db/meta.yaml b/recipes/bioconductor-hs6ug171.db/meta.yaml
index 1e054aa31431c..17b3f570c6ea2 100644
--- a/recipes/bioconductor-hs6ug171.db/meta.yaml
+++ b/recipes/bioconductor-hs6ug171.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "Hs6UG171.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 7aaf8a2441941f70247275c93735ed3b
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hs6ug171.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hsagilentdesign026652.db/meta.yaml b/recipes/bioconductor-hsagilentdesign026652.db/meta.yaml
index 557b34846786b..d5d0b53d117d3 100644
--- a/recipes/bioconductor-hsagilentdesign026652.db/meta.yaml
+++ b/recipes/bioconductor-hsagilentdesign026652.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "HsAgilentDesign026652.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: dcd2c748bf9d7c002611cd5cf2ff38c0
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hsagilentdesign026652.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hsmmsinglecell/meta.yaml b/recipes/bioconductor-hsmmsinglecell/meta.yaml
index 90bf4930e5134..642e145c87cf4 100644
--- a/recipes/bioconductor-hsmmsinglecell/meta.yaml
+++ b/recipes/bioconductor-hsmmsinglecell/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "HSMMSingleCell" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 52c7427453286b6ba0f069bdf32457ac
+  md5: dae440cd20110d25cd699a9a792ac4b8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hsmmsinglecell", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hsmmsinglecell/post-link.sh b/recipes/bioconductor-hsmmsinglecell/post-link.sh
index 2641c42f34ab9..eac2f6e837b9c 100644
--- a/recipes/bioconductor-hsmmsinglecell/post-link.sh
+++ b/recipes/bioconductor-hsmmsinglecell/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "hsmmsinglecell-1.20.0"
+installBiocDataPackage.sh "hsmmsinglecell-1.22.0"
diff --git a/recipes/bioconductor-hspec/meta.yaml b/recipes/bioconductor-hspec/meta.yaml
index 02477afe83c34..cdb859d14a07b 100644
--- a/recipes/bioconductor-hspec/meta.yaml
+++ b/recipes/bioconductor-hspec/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.1" %}
 {% set name = "Hspec" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 0ade3e3147c8f0086e9be2312cccdfeb
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hspec", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hspeccdf/meta.yaml b/recipes/bioconductor-hspeccdf/meta.yaml
index 9b21052295be1..9d7ecbfd4107f 100644
--- a/recipes/bioconductor-hspeccdf/meta.yaml
+++ b/recipes/bioconductor-hspeccdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.1" %}
 {% set name = "hspeccdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 89f81adf91094710558ce6aec79fc7fd
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hspeccdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hta20probeset.db/meta.yaml b/recipes/bioconductor-hta20probeset.db/meta.yaml
index 6f17e022b4c21..8954764a4ca49 100644
--- a/recipes/bioconductor-hta20probeset.db/meta.yaml
+++ b/recipes/bioconductor-hta20probeset.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "hta20probeset.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 8cc15bb71f3c2776015e55a2d7df2c2f
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hta20probeset.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hta20transcriptcluster.db/meta.yaml b/recipes/bioconductor-hta20transcriptcluster.db/meta.yaml
index 53b86adaec017..e8c9ccf5eb116 100644
--- a/recipes/bioconductor-hta20transcriptcluster.db/meta.yaml
+++ b/recipes/bioconductor-hta20transcriptcluster.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "hta20transcriptcluster.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 9debbc190cc5f9f0ad97fbc452fe7025
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hta20transcriptcluster.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hthgu133a.db/meta.yaml b/recipes/bioconductor-hthgu133a.db/meta.yaml
index 441fc2ed9e54c..726b1974b31d6 100644
--- a/recipes/bioconductor-hthgu133a.db/meta.yaml
+++ b/recipes/bioconductor-hthgu133a.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "hthgu133a.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 769ed088760102b61edfb73454d4c642
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hthgu133a.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hthgu133acdf/meta.yaml b/recipes/bioconductor-hthgu133acdf/meta.yaml
index b389ed5eb5dc1..beceffbf2be85 100644
--- a/recipes/bioconductor-hthgu133acdf/meta.yaml
+++ b/recipes/bioconductor-hthgu133acdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hthgu133acdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b92e543867f1f0c08bfa9299e123d608
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hthgu133acdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hthgu133afrmavecs/meta.yaml b/recipes/bioconductor-hthgu133afrmavecs/meta.yaml
index e0c87d4d7752c..c0d9ce5809f99 100644
--- a/recipes/bioconductor-hthgu133afrmavecs/meta.yaml
+++ b/recipes/bioconductor-hthgu133afrmavecs/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.0" %}
 {% set name = "hthgu133afrmavecs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: be3f3d67a94dca3b080c184fba5ff6d8
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hthgu133afrmavecs", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hthgu133aprobe/meta.yaml b/recipes/bioconductor-hthgu133aprobe/meta.yaml
index e5e532ddf982f..e97081613b6ed 100644
--- a/recipes/bioconductor-hthgu133aprobe/meta.yaml
+++ b/recipes/bioconductor-hthgu133aprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hthgu133aprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: cdc17ea670719f055ee75bea1415c754
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hthgu133aprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hthgu133b.db/meta.yaml b/recipes/bioconductor-hthgu133b.db/meta.yaml
index c3e967bc610b3..3f1e467464b75 100644
--- a/recipes/bioconductor-hthgu133b.db/meta.yaml
+++ b/recipes/bioconductor-hthgu133b.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "hthgu133b.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 8501401a7385e28173ea7b60aa3bf3d2
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hthgu133b.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hthgu133bcdf/meta.yaml b/recipes/bioconductor-hthgu133bcdf/meta.yaml
index df1055745d8cc..de3ebaee98b4e 100644
--- a/recipes/bioconductor-hthgu133bcdf/meta.yaml
+++ b/recipes/bioconductor-hthgu133bcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hthgu133bcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 935ae53fb168d9c7890d71020ef4c366
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hthgu133bcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hthgu133bprobe/meta.yaml b/recipes/bioconductor-hthgu133bprobe/meta.yaml
index 10ebfd0f24b6d..4cb19a19a6c5e 100644
--- a/recipes/bioconductor-hthgu133bprobe/meta.yaml
+++ b/recipes/bioconductor-hthgu133bprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hthgu133bprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 8a2e306638a81fdec3b10a014c04c6b9
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hthgu133bprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hthgu133plusa.db/meta.yaml b/recipes/bioconductor-hthgu133plusa.db/meta.yaml
index cd705a0211333..b6fdded12559a 100644
--- a/recipes/bioconductor-hthgu133plusa.db/meta.yaml
+++ b/recipes/bioconductor-hthgu133plusa.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "hthgu133plusa.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 477cb32e1d8eb6da894486ad810b4232
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hthgu133plusa.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hthgu133plusb.db/meta.yaml b/recipes/bioconductor-hthgu133plusb.db/meta.yaml
index bbbc178516b64..091a03b1a4e40 100644
--- a/recipes/bioconductor-hthgu133plusb.db/meta.yaml
+++ b/recipes/bioconductor-hthgu133plusb.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "hthgu133plusb.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: f3214792ba174598b0559937f46de937
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hthgu133plusb.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hthgu133pluspm.db/meta.yaml b/recipes/bioconductor-hthgu133pluspm.db/meta.yaml
index 9d1d8b6afe384..b7b803fc73c0b 100644
--- a/recipes/bioconductor-hthgu133pluspm.db/meta.yaml
+++ b/recipes/bioconductor-hthgu133pluspm.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "hthgu133pluspm.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b0b3cb0174608d5705ae6c80dac02e3c
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hthgu133pluspm.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hthgu133pluspmcdf/meta.yaml b/recipes/bioconductor-hthgu133pluspmcdf/meta.yaml
index 11cf38a94bffc..a4bcc1b6c3e99 100644
--- a/recipes/bioconductor-hthgu133pluspmcdf/meta.yaml
+++ b/recipes/bioconductor-hthgu133pluspmcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hthgu133pluspmcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 56d15101d59decac7811caa15b349a9c
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hthgu133pluspmcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hthgu133pluspmprobe/meta.yaml b/recipes/bioconductor-hthgu133pluspmprobe/meta.yaml
index aa659bd92d900..4906c52b78aba 100644
--- a/recipes/bioconductor-hthgu133pluspmprobe/meta.yaml
+++ b/recipes/bioconductor-hthgu133pluspmprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hthgu133pluspmprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 74713e822a689007892d0eb92dbd456b
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hthgu133pluspmprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-htmg430a.db/meta.yaml b/recipes/bioconductor-htmg430a.db/meta.yaml
index 992f7a3ddbcfd..e8fbd4bfd804b 100644
--- a/recipes/bioconductor-htmg430a.db/meta.yaml
+++ b/recipes/bioconductor-htmg430a.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "htmg430a.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 171e457946a6b485b2ebd928b233abb3
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-htmg430a.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-htmg430acdf/meta.yaml b/recipes/bioconductor-htmg430acdf/meta.yaml
index cfe9d18a3c394..4e08e47255617 100644
--- a/recipes/bioconductor-htmg430acdf/meta.yaml
+++ b/recipes/bioconductor-htmg430acdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "htmg430acdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: aef7a3c3af7d2624ee6fc6f2d22472e2
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-htmg430acdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-htmg430aprobe/meta.yaml b/recipes/bioconductor-htmg430aprobe/meta.yaml
index 6cbe7e27d40fd..6c1055bf656d9 100644
--- a/recipes/bioconductor-htmg430aprobe/meta.yaml
+++ b/recipes/bioconductor-htmg430aprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "htmg430aprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: e50cc49b8887b6ef8ee1152ec12d5010
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-htmg430aprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-htmg430b.db/meta.yaml b/recipes/bioconductor-htmg430b.db/meta.yaml
index f6e1f271c9b60..24cdd2d9eedb8 100644
--- a/recipes/bioconductor-htmg430b.db/meta.yaml
+++ b/recipes/bioconductor-htmg430b.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "htmg430b.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 70849a636e972a9be604a3320d3bd814
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-htmg430b.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-htmg430bcdf/meta.yaml b/recipes/bioconductor-htmg430bcdf/meta.yaml
index d32357e1f15e4..b404825d00bc8 100644
--- a/recipes/bioconductor-htmg430bcdf/meta.yaml
+++ b/recipes/bioconductor-htmg430bcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "htmg430bcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 53cc1408504a5f07b5655aa46b969157
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-htmg430bcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-htmg430bprobe/meta.yaml b/recipes/bioconductor-htmg430bprobe/meta.yaml
index d40dc72edf64d..bcfd9933555af 100644
--- a/recipes/bioconductor-htmg430bprobe/meta.yaml
+++ b/recipes/bioconductor-htmg430bprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "htmg430bprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: f0e3eb56925d786762dee0c2dc82b530
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-htmg430bprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-htmg430pm.db/meta.yaml b/recipes/bioconductor-htmg430pm.db/meta.yaml
index bd147bd809bba..b5ad88deeedc5 100644
--- a/recipes/bioconductor-htmg430pm.db/meta.yaml
+++ b/recipes/bioconductor-htmg430pm.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "htmg430pm.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: f89738ce2e33d1c626aa2d15cd28a49b
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-htmg430pm.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-htmg430pmcdf/meta.yaml b/recipes/bioconductor-htmg430pmcdf/meta.yaml
index 6598a4053c830..02705c76b099c 100644
--- a/recipes/bioconductor-htmg430pmcdf/meta.yaml
+++ b/recipes/bioconductor-htmg430pmcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "htmg430pmcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 016a54b47adbbed7db989787646a0084
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-htmg430pmcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-htmg430pmprobe/meta.yaml b/recipes/bioconductor-htmg430pmprobe/meta.yaml
index 7963d5f2b45b5..cd3aa90766fbd 100644
--- a/recipes/bioconductor-htmg430pmprobe/meta.yaml
+++ b/recipes/bioconductor-htmg430pmprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "htmg430pmprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: f0e053fcc0ca4b5f8c539fc0a3fcb076
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-htmg430pmprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-htqpcr/meta.yaml b/recipes/bioconductor-htqpcr/meta.yaml
index 0b89fd93b0257..4edbbedacde98 100644
--- a/recipes/bioconductor-htqpcr/meta.yaml
+++ b/recipes/bioconductor-htqpcr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.54.0" %}
+{% set version = "1.56.0" %}
 {% set name = "HTqPCR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0b6c73d30c4d92cb932c68e530ac22d4
+  md5: 2deab9ff0c0269549b377a0867482f60
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-htqpcr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: statmod
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-gplots
     - r-rcolorbrewer
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-gplots
     - r-rcolorbrewer
diff --git a/recipes/bioconductor-htrat230pm.db/meta.yaml b/recipes/bioconductor-htrat230pm.db/meta.yaml
index ce30dfb169040..949dfe5fa1ff5 100644
--- a/recipes/bioconductor-htrat230pm.db/meta.yaml
+++ b/recipes/bioconductor-htrat230pm.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "htrat230pm.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 46ed50806c568bf269fe4c51d3df3955
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-htrat230pm.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-htrat230pmcdf/meta.yaml b/recipes/bioconductor-htrat230pmcdf/meta.yaml
index 045ccb437f648..fc6ec741ec909 100644
--- a/recipes/bioconductor-htrat230pmcdf/meta.yaml
+++ b/recipes/bioconductor-htrat230pmcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "htrat230pmcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: c6683d16e8aacccd326f7a7eebb79b98
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-htrat230pmcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-htrat230pmprobe/meta.yaml b/recipes/bioconductor-htrat230pmprobe/meta.yaml
index 720e243a1d53e..b1e1040532964 100644
--- a/recipes/bioconductor-htrat230pmprobe/meta.yaml
+++ b/recipes/bioconductor-htrat230pmprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "htrat230pmprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: e4deeca2dc406367ac4a347e370267cf
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-htrat230pmprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-htratfocus.db/meta.yaml b/recipes/bioconductor-htratfocus.db/meta.yaml
index dc4fbc3c4b3f7..a270b55119363 100644
--- a/recipes/bioconductor-htratfocus.db/meta.yaml
+++ b/recipes/bioconductor-htratfocus.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "htratfocus.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 88be90edb1acb31faedde0b66b27a150
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-htratfocus.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-htratfocuscdf/meta.yaml b/recipes/bioconductor-htratfocuscdf/meta.yaml
index 4d6249beb0e25..e0495aa07b0d0 100644
--- a/recipes/bioconductor-htratfocuscdf/meta.yaml
+++ b/recipes/bioconductor-htratfocuscdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "htratfocuscdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 04b4952f7d8b607a7eb0f779c08c57dc
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-htratfocuscdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-htratfocusprobe/meta.yaml b/recipes/bioconductor-htratfocusprobe/meta.yaml
index 89cf2296d49f0..e79a05ee51073 100644
--- a/recipes/bioconductor-htratfocusprobe/meta.yaml
+++ b/recipes/bioconductor-htratfocusprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "htratfocusprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 26a0963d8aff314a4a1f2c47e9147a8a
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-htratfocusprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-htseqgenie/meta.yaml b/recipes/bioconductor-htseqgenie/meta.yaml
index 41cdbbce8ef23..088cb8b6a16d9 100644
--- a/recipes/bioconductor-htseqgenie/meta.yaml
+++ b/recipes/bioconductor-htseqgenie/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "4.30.0" %}
+{% set version = "4.32.0" %}
 {% set name = "HTSeqGenie" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,54 +11,55 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0ace11ef8422722f14ec1c7fcf7b6164
+  md5: 000b728da136ce28e0204ed5b8752792
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-htseqgenie", max_pin="x.x") }}'
   noarch: generic
-# Suggests: TxDb.Hsapiens.UCSC.hg19.knownGene, LungCancerLines, org.Hs.eg.db
+# Suggests: TxDb.Hsapiens.UCSC.hg19.knownGene, LungCancerLines, org.Hs.eg.db, RUnit
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-chipseq >=1.50.0,<1.51.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gmapr >=1.42.0,<1.43.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
-    - 'bioconductor-varianttools >=1.42.0,<1.43.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-chipseq >=1.52.0,<1.53.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gmapr >=1.44.0,<1.45.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
+    - 'bioconductor-varianttools >=1.44.0,<1.45.0'
     - r-base
     - 'r-cairo >=1.5.5'
     - 'r-hwriter >=1.3.0'
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-chipseq >=1.50.0,<1.51.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gmapr >=1.42.0,<1.43.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
-    - 'bioconductor-varianttools >=1.42.0,<1.43.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-chipseq >=1.52.0,<1.53.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gmapr >=1.44.0,<1.45.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
+    - 'bioconductor-varianttools >=1.44.0,<1.45.0'
     - r-base
     - 'r-cairo >=1.5.5'
     - 'r-hwriter >=1.3.0'
diff --git a/recipes/bioconductor-htsfilter/meta.yaml b/recipes/bioconductor-htsfilter/meta.yaml
index 5a140bf362057..84f5596a79d3c 100644
--- a/recipes/bioconductor-htsfilter/meta.yaml
+++ b/recipes/bioconductor-htsfilter/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "HTSFilter" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e65f6c1f3249d76932b78a1910d0b687
+  md5: 6eb5ebe090ac02b5a0099f63f3e6ccc6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-htsfilter", max_pin="x.x") }}'
   noarch: generic
 # Suggests: EDASeq, testthat, knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-hu35ksuba.db/meta.yaml b/recipes/bioconductor-hu35ksuba.db/meta.yaml
index 2cb97faadc36e..aa6d56d193767 100644
--- a/recipes/bioconductor-hu35ksuba.db/meta.yaml
+++ b/recipes/bioconductor-hu35ksuba.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "hu35ksuba.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 4c2306a80f26bacb6172e84c896ef911
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hu35ksuba.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hu35ksubacdf/meta.yaml b/recipes/bioconductor-hu35ksubacdf/meta.yaml
index b3c4ade0e8d97..6e0051e83251d 100644
--- a/recipes/bioconductor-hu35ksubacdf/meta.yaml
+++ b/recipes/bioconductor-hu35ksubacdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hu35ksubacdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: c8b82c4755eb62818ca0dbf22de5d25e
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hu35ksubacdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hu35ksubaprobe/meta.yaml b/recipes/bioconductor-hu35ksubaprobe/meta.yaml
index 5f0068482c219..27ff012919986 100644
--- a/recipes/bioconductor-hu35ksubaprobe/meta.yaml
+++ b/recipes/bioconductor-hu35ksubaprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hu35ksubaprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 49bd19ec3b6404211f2e410e473fa644
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hu35ksubaprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hu35ksubb.db/meta.yaml b/recipes/bioconductor-hu35ksubb.db/meta.yaml
index 906cc80272b08..26b4effc29790 100644
--- a/recipes/bioconductor-hu35ksubb.db/meta.yaml
+++ b/recipes/bioconductor-hu35ksubb.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "hu35ksubb.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b82ece4860eddff8010faecaae802312
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hu35ksubb.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hu35ksubbcdf/meta.yaml b/recipes/bioconductor-hu35ksubbcdf/meta.yaml
index 89c4be6fce455..058b2d719b0ab 100644
--- a/recipes/bioconductor-hu35ksubbcdf/meta.yaml
+++ b/recipes/bioconductor-hu35ksubbcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hu35ksubbcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: d873b6c521e926b331f799baf10a4e13
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hu35ksubbcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hu35ksubbprobe/meta.yaml b/recipes/bioconductor-hu35ksubbprobe/meta.yaml
index 94b5b39aa7c4a..f268e43a45ffd 100644
--- a/recipes/bioconductor-hu35ksubbprobe/meta.yaml
+++ b/recipes/bioconductor-hu35ksubbprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hu35ksubbprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 0a63051d0faf38a56f17d5865cbed9b1
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hu35ksubbprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hu35ksubc.db/meta.yaml b/recipes/bioconductor-hu35ksubc.db/meta.yaml
index e4b8f21730a8c..12eff013b1335 100644
--- a/recipes/bioconductor-hu35ksubc.db/meta.yaml
+++ b/recipes/bioconductor-hu35ksubc.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "hu35ksubc.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 57e60b8d025e0e8cf7ac2b355111cf2d
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hu35ksubc.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hu35ksubccdf/meta.yaml b/recipes/bioconductor-hu35ksubccdf/meta.yaml
index a46bf48696983..e74f1c9802053 100644
--- a/recipes/bioconductor-hu35ksubccdf/meta.yaml
+++ b/recipes/bioconductor-hu35ksubccdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hu35ksubccdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: de96e69680c5f8747c99d170272d7c3c
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hu35ksubccdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hu35ksubcprobe/meta.yaml b/recipes/bioconductor-hu35ksubcprobe/meta.yaml
index 4c768cd883634..e34a24730e4a9 100644
--- a/recipes/bioconductor-hu35ksubcprobe/meta.yaml
+++ b/recipes/bioconductor-hu35ksubcprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hu35ksubcprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b10453ea061b09172192bd21baa9083d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hu35ksubcprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hu35ksubd.db/meta.yaml b/recipes/bioconductor-hu35ksubd.db/meta.yaml
index 8321b024f45f6..1e4d5c25aa532 100644
--- a/recipes/bioconductor-hu35ksubd.db/meta.yaml
+++ b/recipes/bioconductor-hu35ksubd.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "hu35ksubd.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 5ce6b6ede0f9733fd4dc527a28114327
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hu35ksubd.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hu35ksubdcdf/meta.yaml b/recipes/bioconductor-hu35ksubdcdf/meta.yaml
index 9190d08512c9c..bc47065d4bc5e 100644
--- a/recipes/bioconductor-hu35ksubdcdf/meta.yaml
+++ b/recipes/bioconductor-hu35ksubdcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hu35ksubdcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 6f6423426969f306fb0d5171e75b5380
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hu35ksubdcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hu35ksubdprobe/meta.yaml b/recipes/bioconductor-hu35ksubdprobe/meta.yaml
index 8f374a04f9e97..aecbeb343c4d5 100644
--- a/recipes/bioconductor-hu35ksubdprobe/meta.yaml
+++ b/recipes/bioconductor-hu35ksubdprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hu35ksubdprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 430a9b8ccd646d8cb06e6c1d750eec23
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hu35ksubdprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hu6800.db/meta.yaml b/recipes/bioconductor-hu6800.db/meta.yaml
index f9ea39f7a4194..b0075ffaca4fd 100644
--- a/recipes/bioconductor-hu6800.db/meta.yaml
+++ b/recipes/bioconductor-hu6800.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "hu6800.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: aa1cb6c107dee6d2ed1929b48aa831e9
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hu6800.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hu6800cdf/meta.yaml b/recipes/bioconductor-hu6800cdf/meta.yaml
index a3d7f7eb47cc0..e614aa6fa22fa 100644
--- a/recipes/bioconductor-hu6800cdf/meta.yaml
+++ b/recipes/bioconductor-hu6800cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hu6800cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: fa2b2ab8f3aba517c63ad2e65873d2f0
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hu6800cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hu6800probe/meta.yaml b/recipes/bioconductor-hu6800probe/meta.yaml
index 314442af32bc1..f27bcb41f1371 100644
--- a/recipes/bioconductor-hu6800probe/meta.yaml
+++ b/recipes/bioconductor-hu6800probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hu6800probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 7a2383bd870cbc0628c210174e911250
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hu6800probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hu6800subacdf/meta.yaml b/recipes/bioconductor-hu6800subacdf/meta.yaml
index 269fa0149a80e..14d7f881b2a7e 100644
--- a/recipes/bioconductor-hu6800subacdf/meta.yaml
+++ b/recipes/bioconductor-hu6800subacdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hu6800subacdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 9e8ec301e066e400564976cd9750297e
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hu6800subacdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hu6800subbcdf/meta.yaml b/recipes/bioconductor-hu6800subbcdf/meta.yaml
index 38d19b590969e..2d20ea344463a 100644
--- a/recipes/bioconductor-hu6800subbcdf/meta.yaml
+++ b/recipes/bioconductor-hu6800subbcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hu6800subbcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 529aad5e4e73594c8cb66274d7e4adc5
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hu6800subbcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hu6800subccdf/meta.yaml b/recipes/bioconductor-hu6800subccdf/meta.yaml
index f6e7904c7ab0c..85db4b5ce728c 100644
--- a/recipes/bioconductor-hu6800subccdf/meta.yaml
+++ b/recipes/bioconductor-hu6800subccdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hu6800subccdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 020fe3a6bdf44efbde15432b968433e8
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hu6800subccdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hu6800subdcdf/meta.yaml b/recipes/bioconductor-hu6800subdcdf/meta.yaml
index 8633581ede40a..f3b36b1e7d49c 100644
--- a/recipes/bioconductor-hu6800subdcdf/meta.yaml
+++ b/recipes/bioconductor-hu6800subdcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hu6800subdcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 7966c21babb23e18cca4faafc8720f0a
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hu6800subdcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hubpub/meta.yaml b/recipes/bioconductor-hubpub/meta.yaml
index 3249609e8a7d1..ce98d178e7182 100644
--- a/recipes/bioconductor-hubpub/meta.yaml
+++ b/recipes/bioconductor-hubpub/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "HubPub" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 51721091a3789f40a9c60732c92da643
+  md5: 9595496f838fced99c75d9604456df25
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hubpub", max_pin="x.x") }}'
   noarch: generic
 # Suggests: AnnotationHubData, ExperimentHubData, testthat, knitr, rmarkdown, BiocStyle,
 requirements:
   host:
-    - 'bioconductor-biocthis >=1.10.0,<1.11.0'
+    - 'bioconductor-biocthis >=1.12.0,<1.13.0'
     - r-available
     - r-aws.s3
     - r-base
@@ -30,7 +31,7 @@ requirements:
     - r-fs
     - r-usethis
   run:
-    - 'bioconductor-biocthis >=1.10.0,<1.11.0'
+    - 'bioconductor-biocthis >=1.12.0,<1.13.0'
     - r-available
     - r-aws.s3
     - r-base
diff --git a/recipes/bioconductor-huex.1.0.st.v2frmavecs/meta.yaml b/recipes/bioconductor-huex.1.0.st.v2frmavecs/meta.yaml
index f5e632bc3dcf2..f52623a6d6adc 100644
--- a/recipes/bioconductor-huex.1.0.st.v2frmavecs/meta.yaml
+++ b/recipes/bioconductor-huex.1.0.st.v2frmavecs/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.1.0" %}
 {% set name = "huex.1.0.st.v2frmavecs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 982935d07b526ff555790e309fe4147e
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-huex.1.0.st.v2frmavecs", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-huex10stprobeset.db/meta.yaml b/recipes/bioconductor-huex10stprobeset.db/meta.yaml
index 5e94fe7224db8..e46db4b591594 100644
--- a/recipes/bioconductor-huex10stprobeset.db/meta.yaml
+++ b/recipes/bioconductor-huex10stprobeset.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "huex10stprobeset.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: fda9fc7340aeda2564a76756d2b8d4d3
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-huex10stprobeset.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-huex10sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-huex10sttranscriptcluster.db/meta.yaml
index b955652056f57..466ce65126903 100644
--- a/recipes/bioconductor-huex10sttranscriptcluster.db/meta.yaml
+++ b/recipes/bioconductor-huex10sttranscriptcluster.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "huex10sttranscriptcluster.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 0789a1e8ee4474bd64c2772eab0db247
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-huex10sttranscriptcluster.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-huexexonprobesetlocation/meta.yaml b/recipes/bioconductor-huexexonprobesetlocation/meta.yaml
index 4e27b068904df..5d2372d38e4b0 100644
--- a/recipes/bioconductor-huexexonprobesetlocation/meta.yaml
+++ b/recipes/bioconductor-huexexonprobesetlocation/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.15.0" %}
 {% set name = "HuExExonProbesetLocation" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 11bf1b88d9e90711b4064497f611da4f
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-huexexonprobesetlocation", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-huexexonprobesetlocationhg18/meta.yaml b/recipes/bioconductor-huexexonprobesetlocationhg18/meta.yaml
index 184e2dcafb9b8..eda440ed446a7 100644
--- a/recipes/bioconductor-huexexonprobesetlocationhg18/meta.yaml
+++ b/recipes/bioconductor-huexexonprobesetlocationhg18/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.0.2" %}
 {% set name = "HuExExonProbesetLocationHg18" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: bb00b7f5e4db2b04dca5951aa6bd073e
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-huexexonprobesetlocationhg18", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-huexexonprobesetlocationhg19/meta.yaml b/recipes/bioconductor-huexexonprobesetlocationhg19/meta.yaml
index 05c44b77e47ed..e74f60f8e47af 100644
--- a/recipes/bioconductor-huexexonprobesetlocationhg19/meta.yaml
+++ b/recipes/bioconductor-huexexonprobesetlocationhg19/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.0.3" %}
 {% set name = "HuExExonProbesetLocationHg19" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 1a3843c95c82dc71a043d902961ba33a
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-huexexonprobesetlocationhg19", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hugene.1.0.st.v1frmavecs/meta.yaml b/recipes/bioconductor-hugene.1.0.st.v1frmavecs/meta.yaml
index 2cda95075af1c..f4e9cd4365fe4 100644
--- a/recipes/bioconductor-hugene.1.0.st.v1frmavecs/meta.yaml
+++ b/recipes/bioconductor-hugene.1.0.st.v1frmavecs/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.1.0" %}
 {% set name = "hugene.1.0.st.v1frmavecs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 711a69e6fa6dd3737a90615222416dfc
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hugene.1.0.st.v1frmavecs", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hugene10stprobeset.db/meta.yaml b/recipes/bioconductor-hugene10stprobeset.db/meta.yaml
index d8d7c54e93ff4..f70af17a40af8 100644
--- a/recipes/bioconductor-hugene10stprobeset.db/meta.yaml
+++ b/recipes/bioconductor-hugene10stprobeset.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "hugene10stprobeset.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 0a4a87d64564cbec1e4bb1f9e5a67add
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hugene10stprobeset.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hugene10sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-hugene10sttranscriptcluster.db/meta.yaml
index 9474e61d516a9..b7a09239b1a3a 100644
--- a/recipes/bioconductor-hugene10sttranscriptcluster.db/meta.yaml
+++ b/recipes/bioconductor-hugene10sttranscriptcluster.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "hugene10sttranscriptcluster.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: a32fb5729d37e96f157b0a1085dff43e
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hugene10sttranscriptcluster.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hugene10stv1cdf/meta.yaml b/recipes/bioconductor-hugene10stv1cdf/meta.yaml
index c54c5659638c1..bb829c36e72d1 100644
--- a/recipes/bioconductor-hugene10stv1cdf/meta.yaml
+++ b/recipes/bioconductor-hugene10stv1cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hugene10stv1cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: f1fb1c7076ac40b9e709f18e645d6181
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hugene10stv1cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hugene10stv1probe/meta.yaml b/recipes/bioconductor-hugene10stv1probe/meta.yaml
index 288a450e096b6..8f44196d5f02b 100644
--- a/recipes/bioconductor-hugene10stv1probe/meta.yaml
+++ b/recipes/bioconductor-hugene10stv1probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "hugene10stv1probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 6ed3c17dd026acf008658a5994044c62
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hugene10stv1probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hugene11stprobeset.db/meta.yaml b/recipes/bioconductor-hugene11stprobeset.db/meta.yaml
index f619a84eceed7..a66804c1c2f9b 100644
--- a/recipes/bioconductor-hugene11stprobeset.db/meta.yaml
+++ b/recipes/bioconductor-hugene11stprobeset.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "hugene11stprobeset.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 4d22ec32dedd6c8603d5f545faeb4ba4
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hugene11stprobeset.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hugene11sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-hugene11sttranscriptcluster.db/meta.yaml
index 7d8d4ebef3d56..ea292b35aa0c2 100644
--- a/recipes/bioconductor-hugene11sttranscriptcluster.db/meta.yaml
+++ b/recipes/bioconductor-hugene11sttranscriptcluster.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "hugene11sttranscriptcluster.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 7fed70c4bd904655459a41b5667f7c23
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hugene11sttranscriptcluster.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hugene20stprobeset.db/meta.yaml b/recipes/bioconductor-hugene20stprobeset.db/meta.yaml
index 48ebdce03070f..8a24073d3fade 100644
--- a/recipes/bioconductor-hugene20stprobeset.db/meta.yaml
+++ b/recipes/bioconductor-hugene20stprobeset.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "hugene20stprobeset.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: bf7909fc41a80da59099327a6d9abb57
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hugene20stprobeset.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hugene20sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-hugene20sttranscriptcluster.db/meta.yaml
index 1208738d62693..761de8398ee20 100644
--- a/recipes/bioconductor-hugene20sttranscriptcluster.db/meta.yaml
+++ b/recipes/bioconductor-hugene20sttranscriptcluster.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "hugene20sttranscriptcluster.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 0b929a3a959662e8a7265f58b81b4e35
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hugene20sttranscriptcluster.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hugene21stprobeset.db/meta.yaml b/recipes/bioconductor-hugene21stprobeset.db/meta.yaml
index 66c1e3cd428e0..e76e57e758538 100644
--- a/recipes/bioconductor-hugene21stprobeset.db/meta.yaml
+++ b/recipes/bioconductor-hugene21stprobeset.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "hugene21stprobeset.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 2b816dca48d0b2e1a946469b8d85d257
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hugene21stprobeset.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hugene21sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-hugene21sttranscriptcluster.db/meta.yaml
index d8dee7131293e..e6f8ab5591590 100644
--- a/recipes/bioconductor-hugene21sttranscriptcluster.db/meta.yaml
+++ b/recipes/bioconductor-hugene21sttranscriptcluster.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "hugene21sttranscriptcluster.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: ca90de6093bbad760abfcf0cfeada830
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hugene21sttranscriptcluster.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-human.db0/meta.yaml b/recipes/bioconductor-human.db0/meta.yaml
index 8421a6640099b..4e65c14b082c3 100644
--- a/recipes/bioconductor-human.db0/meta.yaml
+++ b/recipes/bioconductor-human.db0/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "human.db0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 4597ee42fd14b0e83754027205d4ca17
+  md5: e3b04d46f0618785b37fb84bb899295e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-human.db0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-human.db0/post-link.sh b/recipes/bioconductor-human.db0/post-link.sh
index abdd185f80b1c..ec096e9328845 100644
--- a/recipes/bioconductor-human.db0/post-link.sh
+++ b/recipes/bioconductor-human.db0/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "human.db0-3.17.0"
+installBiocDataPackage.sh "human.db0-3.18.0"
diff --git a/recipes/bioconductor-human1mduov3bcrlmm/meta.yaml b/recipes/bioconductor-human1mduov3bcrlmm/meta.yaml
index d0f2dfd66c790..d5179e02efca6 100644
--- a/recipes/bioconductor-human1mduov3bcrlmm/meta.yaml
+++ b/recipes/bioconductor-human1mduov3bcrlmm/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.4" %}
 {% set name = "human1mduov3bCrlmm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 0ff9f1e8bcc6348d6777bbb982ae0325
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-human1mduov3bcrlmm", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-human1mv1ccrlmm/meta.yaml b/recipes/bioconductor-human1mv1ccrlmm/meta.yaml
index 6db7fa7d0e95b..31b085def1cd8 100644
--- a/recipes/bioconductor-human1mv1ccrlmm/meta.yaml
+++ b/recipes/bioconductor-human1mv1ccrlmm/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.3" %}
 {% set name = "human1mv1cCrlmm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: b9f638c7b0ede50cb070f1bae85eb4dc
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-human1mv1ccrlmm", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-human370quadv3ccrlmm/meta.yaml b/recipes/bioconductor-human370quadv3ccrlmm/meta.yaml
index 40c13ad7bd002..6d828cffe3c89 100644
--- a/recipes/bioconductor-human370quadv3ccrlmm/meta.yaml
+++ b/recipes/bioconductor-human370quadv3ccrlmm/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.3" %}
 {% set name = "human370quadv3cCrlmm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 33c3ccc3793ed95647418b746a5177f9
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-human370quadv3ccrlmm", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-human370v1ccrlmm/meta.yaml b/recipes/bioconductor-human370v1ccrlmm/meta.yaml
index ad69b1464d1fd..36f4345a136f5 100644
--- a/recipes/bioconductor-human370v1ccrlmm/meta.yaml
+++ b/recipes/bioconductor-human370v1ccrlmm/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.2" %}
 {% set name = "human370v1cCrlmm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 9ec4192f533faee2b14484de02548075
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-human370v1ccrlmm", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-human550v3bcrlmm/meta.yaml b/recipes/bioconductor-human550v3bcrlmm/meta.yaml
index 7b775b368e034..7c0d212370923 100644
--- a/recipes/bioconductor-human550v3bcrlmm/meta.yaml
+++ b/recipes/bioconductor-human550v3bcrlmm/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.4" %}
 {% set name = "human550v3bCrlmm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 20e6b008fab5e1084354c87ad50d18a8
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-human550v3bcrlmm", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-human610quadv1bcrlmm/meta.yaml b/recipes/bioconductor-human610quadv1bcrlmm/meta.yaml
index 800f56624e589..9c38228c1a8c5 100644
--- a/recipes/bioconductor-human610quadv1bcrlmm/meta.yaml
+++ b/recipes/bioconductor-human610quadv1bcrlmm/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.3" %}
 {% set name = "human610quadv1bCrlmm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 609cf09410774e084ee6a3286652bb1a
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-human610quadv1bcrlmm", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-human650v3acrlmm/meta.yaml b/recipes/bioconductor-human650v3acrlmm/meta.yaml
index 80118154e125f..9808f0f0abf83 100644
--- a/recipes/bioconductor-human650v3acrlmm/meta.yaml
+++ b/recipes/bioconductor-human650v3acrlmm/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.3" %}
 {% set name = "human650v3aCrlmm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 4b0de367ccc0f7499dcffe21ef1893c2
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-human650v3acrlmm", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-human660quadv1acrlmm/meta.yaml b/recipes/bioconductor-human660quadv1acrlmm/meta.yaml
index 6bfc093423ad5..fd3e90ca86186 100644
--- a/recipes/bioconductor-human660quadv1acrlmm/meta.yaml
+++ b/recipes/bioconductor-human660quadv1acrlmm/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.3" %}
 {% set name = "human660quadv1aCrlmm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 5fd2d94a462e150c888f13c5c0975c36
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-human660quadv1acrlmm", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-humanaffydata/meta.yaml b/recipes/bioconductor-humanaffydata/meta.yaml
index b54ab8e296b47..c746ebbe83689 100644
--- a/recipes/bioconductor-humanaffydata/meta.yaml
+++ b/recipes/bioconductor-humanaffydata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "HumanAffyData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: bbb55417c9bdc12d387677c47cb8fc19
+  md5: 11341e772169b7141b9bd22161e14417
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-humanaffydata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-humanaffydata/post-link.sh b/recipes/bioconductor-humanaffydata/post-link.sh
index dc899f9b002ee..596705396fd7e 100644
--- a/recipes/bioconductor-humanaffydata/post-link.sh
+++ b/recipes/bioconductor-humanaffydata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "humanaffydata-1.26.0"
+installBiocDataPackage.sh "humanaffydata-1.28.0"
diff --git a/recipes/bioconductor-humanchrloc/meta.yaml b/recipes/bioconductor-humanchrloc/meta.yaml
index 2c1bf4c51a2c8..e535202d4443c 100644
--- a/recipes/bioconductor-humanchrloc/meta.yaml
+++ b/recipes/bioconductor-humanchrloc/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.1.6" %}
 {% set name = "humanCHRLOC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 113450c0822000c9b4e8a0141cf4b819
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-humanchrloc", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-humancytosnp12v2p1hcrlmm/meta.yaml b/recipes/bioconductor-humancytosnp12v2p1hcrlmm/meta.yaml
index 21f2a40ff19ac..00664a6615e8e 100644
--- a/recipes/bioconductor-humancytosnp12v2p1hcrlmm/meta.yaml
+++ b/recipes/bioconductor-humancytosnp12v2p1hcrlmm/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.1" %}
 {% set name = "humancytosnp12v2p1hCrlmm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: edf80245ddb28afb9fbaa6668187bf3a
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-humancytosnp12v2p1hcrlmm", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-humanomni1quadv1bcrlmm/meta.yaml b/recipes/bioconductor-humanomni1quadv1bcrlmm/meta.yaml
index 3ed5297328e11..7b086ab8634cb 100644
--- a/recipes/bioconductor-humanomni1quadv1bcrlmm/meta.yaml
+++ b/recipes/bioconductor-humanomni1quadv1bcrlmm/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.3" %}
 {% set name = "humanomni1quadv1bCrlmm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: e81b2603f37d4cda3f28cd69a7296a23
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-humanomni1quadv1bcrlmm", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-humanomni25quadv1bcrlmm/meta.yaml b/recipes/bioconductor-humanomni25quadv1bcrlmm/meta.yaml
index b57f45359f1d6..ea1f4ab912275 100644
--- a/recipes/bioconductor-humanomni25quadv1bcrlmm/meta.yaml
+++ b/recipes/bioconductor-humanomni25quadv1bcrlmm/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.2" %}
 {% set name = "humanomni25quadv1bCrlmm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 2ee1fa7bf712d7f81a167079c975d49f
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-humanomni25quadv1bcrlmm", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-humanomni5quadv1bcrlmm/meta.yaml b/recipes/bioconductor-humanomni5quadv1bcrlmm/meta.yaml
index a6a531e67d6c3..f90cbd61ccc35 100644
--- a/recipes/bioconductor-humanomni5quadv1bcrlmm/meta.yaml
+++ b/recipes/bioconductor-humanomni5quadv1bcrlmm/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.0" %}
 {% set name = "humanomni5quadv1bCrlmm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 3ac4d6867c3d5590a6308d6edff0912b
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-humanomni5quadv1bcrlmm", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-humanomniexpress12v1bcrlmm/meta.yaml b/recipes/bioconductor-humanomniexpress12v1bcrlmm/meta.yaml
index f7f3a1ad3d2a4..b15927786e117 100644
--- a/recipes/bioconductor-humanomniexpress12v1bcrlmm/meta.yaml
+++ b/recipes/bioconductor-humanomniexpress12v1bcrlmm/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.1" %}
 {% set name = "humanomniexpress12v1bCrlmm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: abdb730fc230db669e588e024ee7624b
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-humanomniexpress12v1bcrlmm", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-humanstemcell/meta.yaml b/recipes/bioconductor-humanstemcell/meta.yaml
index 8fe0e1e4e82e5..c0d2b5a0d197e 100644
--- a/recipes/bioconductor-humanstemcell/meta.yaml
+++ b/recipes/bioconductor-humanstemcell/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.40.0" %}
+{% set version = "0.42.0" %}
 {% set name = "humanStemCell" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8388d74f0e892de07e04e2e200041e6d
+  md5: be6367d8fa19187d644247ed8795eb0e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-humanstemcell", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - 'bioconductor-hgu133plus2.db >=3.13.0,<3.14.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - 'bioconductor-hgu133plus2.db >=3.13.0,<3.14.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-humanstemcell/post-link.sh b/recipes/bioconductor-humanstemcell/post-link.sh
index 84918843e521c..959dc8dc69bda 100644
--- a/recipes/bioconductor-humanstemcell/post-link.sh
+++ b/recipes/bioconductor-humanstemcell/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "humanstemcell-0.40.0"
+installBiocDataPackage.sh "humanstemcell-0.42.0"
diff --git a/recipes/bioconductor-humantranscriptomecompendium/meta.yaml b/recipes/bioconductor-humantranscriptomecompendium/meta.yaml
index 00cb3e294ac9c..104d5c4efe8ea 100644
--- a/recipes/bioconductor-humantranscriptomecompendium/meta.yaml
+++ b/recipes/bioconductor-humantranscriptomecompendium/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.17.0" %}
 {% set name = "HumanTranscriptomeCompendium" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 98846960141df3feafef02d8aff9590b
+  md5: 00689fd704a35eea4e0ba38516603b49
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-humantranscriptomecompendium", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, beeswarm, tximportData, DT, tximport, dplyr, magrittr, BiocFileCache, testthat, rhdf5client, rmarkdown
 requirements:
   host:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-ssrch >=1.16.0,<1.17.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-ssrch >=1.18.0,<1.19.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-shiny
   run:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-ssrch >=1.16.0,<1.17.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-ssrch >=1.18.0,<1.19.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-shiny
 test:
diff --git a/recipes/bioconductor-hummingbird/meta.yaml b/recipes/bioconductor-hummingbird/meta.yaml
index 4fb842a74040f..506999c697083 100644
--- a/recipes/bioconductor-hummingbird/meta.yaml
+++ b/recipes/bioconductor-hummingbird/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "hummingbird" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 715ef224bb7c7b1b85e2ee22c2b5f52a
+  md5: 3f2788dadae0f811072b04866fc9e5ed
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hummingbird", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-rcpp
     - libblas
     - liblapack
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-rcpp
   build:
diff --git a/recipes/bioconductor-huo22.db/meta.yaml b/recipes/bioconductor-huo22.db/meta.yaml
index ec7936b6b3d7c..b0ae8869cbd58 100644
--- a/recipes/bioconductor-huo22.db/meta.yaml
+++ b/recipes/bioconductor-huo22.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "HuO22.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: ddabf6c01f94c1dfd6ab35b40852828a
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-huo22.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hwgcod.db/meta.yaml b/recipes/bioconductor-hwgcod.db/meta.yaml
index 6eb2d50cbb487..dfb997797f058 100644
--- a/recipes/bioconductor-hwgcod.db/meta.yaml
+++ b/recipes/bioconductor-hwgcod.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.4.0" %}
 {% set name = "hwgcod.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: a46bf1a242853bbab26351a11b18030a
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hwgcod.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-hybridmtest/meta.yaml b/recipes/bioconductor-hybridmtest/meta.yaml
index 28eb5b06abebc..009114237f60b 100644
--- a/recipes/bioconductor-hybridmtest/meta.yaml
+++ b/recipes/bioconductor-hybridmtest/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.44.0" %}
+{% set version = "1.46.0" %}
 {% set name = "HybridMTest" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: dd6c87352381d3c242791b824acc784e
+  md5: a2b1764b0e458f82e6055a3ebdf90933
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hybridmtest", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-fdrtool
     - r-mass
     - r-survival
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-fdrtool
     - r-mass
diff --git a/recipes/bioconductor-hyper/build.sh b/recipes/bioconductor-hyper/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-hyper/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-hyper/meta.yaml b/recipes/bioconductor-hyper/meta.yaml
new file mode 100644
index 0000000000000..99a5d17a40f21
--- /dev/null
+++ b/recipes/bioconductor-hyper/meta.yaml
@@ -0,0 +1,79 @@
+{% set version = "2.0.0" %}
+{% set name = "hypeR" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: d2de417437ab81645e7d4702021f349f
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hyper", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: tidyverse, devtools, testthat, knitr
+requirements:
+  host:
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - r-base
+    - r-dplyr
+    - r-ggforce
+    - r-ggplot2
+    - r-htmltools
+    - r-httr
+    - r-igraph
+    - r-kableextra
+    - r-magrittr
+    - r-msigdbr
+    - r-openxlsx
+    - r-purrr
+    - r-r6
+    - r-reactable
+    - r-reshape2
+    - r-rlang
+    - r-rmarkdown
+    - r-scales
+    - r-shiny
+    - r-stringr
+    - r-visnetwork
+  run:
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - r-base
+    - r-dplyr
+    - r-ggforce
+    - r-ggplot2
+    - r-htmltools
+    - r-httr
+    - r-igraph
+    - r-kableextra
+    - r-magrittr
+    - r-msigdbr
+    - r-openxlsx
+    - r-purrr
+    - r-r6
+    - r-reactable
+    - r-reshape2
+    - r-rlang
+    - r-rmarkdown
+    - r-scales
+    - r-shiny
+    - r-stringr
+    - r-visnetwork
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'GPL-3 + file LICENSE'
+  summary: 'An R Package For Geneset Enrichment Workflows'
+  description: 'An R Package for Geneset Enrichment Workflows.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-hyperdraw/meta.yaml b/recipes/bioconductor-hyperdraw/meta.yaml
index 21883a6196bb8..10d2f229c833c 100644
--- a/recipes/bioconductor-hyperdraw/meta.yaml
+++ b/recipes/bioconductor-hyperdraw/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.52.0" %}
+{% set version = "1.54.0" %}
 {% set name = "hyperdraw" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c3cf1dd57ee69e05f8da913acb35477f
+  md5: 2b1ec2cf9ea920a241f821baa08bb393
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hyperdraw", max_pin="x.x") }}'
   noarch: generic
 # SystemRequirements: graphviz
 requirements:
   host:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-hypergraph >=1.72.0,<1.73.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-hypergraph >=1.74.0,<1.75.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - graphviz
   run:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-hypergraph >=1.72.0,<1.73.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-hypergraph >=1.74.0,<1.75.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - graphviz
 test:
diff --git a/recipes/bioconductor-hypergraph/meta.yaml b/recipes/bioconductor-hypergraph/meta.yaml
index e51ca8cc87f7d..b46a9d8bbdee9 100644
--- a/recipes/bioconductor-hypergraph/meta.yaml
+++ b/recipes/bioconductor-hypergraph/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "hypergraph" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 8bf5823131a132c2be422e4caab4808d
+  md5: e97653a8503ba0bcb6da1dbdf1a3552b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-hypergraph", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, RUnit
 requirements:
   host:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
   run:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-iaseq/meta.yaml b/recipes/bioconductor-iaseq/meta.yaml
index 7772ed35787bd..45a697e239e4e 100644
--- a/recipes/bioconductor-iaseq/meta.yaml
+++ b/recipes/bioconductor-iaseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.44.0" %}
+{% set version = "1.46.0" %}
 {% set name = "iASeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 74ee0ce567f55f4ff926ec7b03e6d594
+  md5: 3086632b16254c5b1f22c4f376bd43a7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-iaseq", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-iasva/meta.yaml b/recipes/bioconductor-iasva/meta.yaml
index ed0ae3531538c..500fa9d1f76ca 100644
--- a/recipes/bioconductor-iasva/meta.yaml
+++ b/recipes/bioconductor-iasva/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "iasva" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 792ad17be82086c6159523192f4c53c6
+  md5: a52a31d7564e175a288943ae77b22a93
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-iasva", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, rmarkdown, sva, Rtsne, pheatmap, corrplot, DescTools, RColorBrewer
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cluster
     - r-irlba
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cluster
     - r-irlba
diff --git a/recipes/bioconductor-ibbig/meta.yaml b/recipes/bioconductor-ibbig/meta.yaml
index 0bd364e0773a1..3ed3cdcd3bd2e 100644
--- a/recipes/bioconductor-ibbig/meta.yaml
+++ b/recipes/bioconductor-ibbig/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.44.0" %}
+{% set version = "1.46.0" %}
 {% set name = "iBBiG" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: acb9cdbf601cecd9d30682529bb0db9e
+  md5: 6114f0b7d488fd60923a6607bf2d59f2
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ibbig", max_pin="x.x") }}'
 # Suggests: methods
 requirements:
   host:
diff --git a/recipes/bioconductor-ibh/meta.yaml b/recipes/bioconductor-ibh/meta.yaml
index d11cb9df8d7cd..9af60c615d1d4 100644
--- a/recipes/bioconductor-ibh/meta.yaml
+++ b/recipes/bioconductor-ibh/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "ibh" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: fbf555dde7ce9991ec258efe6c02c0a1
+  md5: 3c87bb1083990548eb09c4e43459ba1f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ibh", max_pin="x.x") }}'
   noarch: generic
 # Suggests: yeastCC, stats
 requirements:
   host:
-    - 'bioconductor-simpintlists >=1.36.0,<1.37.0'
+    - 'bioconductor-simpintlists >=1.38.0,<1.39.0'
     - r-base
   run:
-    - 'bioconductor-simpintlists >=1.36.0,<1.37.0'
+    - 'bioconductor-simpintlists >=1.38.0,<1.39.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-ibmq/meta.yaml b/recipes/bioconductor-ibmq/meta.yaml
index e32affd825da3..e1827d8126305 100644
--- a/recipes/bioconductor-ibmq/meta.yaml
+++ b/recipes/bioconductor-ibmq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "iBMQ" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c8840fcc3cdb49e919fe22cda90a58f3
+  md5: 9737c0aee38670491b2f29f73dcb743c
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ibmq", max_pin="x.x") }}'
 # SystemRequirements: GSL and OpenMP
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - 'r-ggplot2 >=0.9.2'
     - libblas
     - liblapack
     - gsl
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - 'r-ggplot2 >=0.9.2'
     - gsl
@@ -44,3 +45,9 @@ about:
   summary: 'integrated Bayesian Modeling of eQTL data'
   description: 'integrated Bayesian Modeling of eQTL data'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
+    - usegalaxy-eu:{{ name|lower }}
diff --git a/recipes/bioconductor-icare/meta.yaml b/recipes/bioconductor-icare/meta.yaml
index ca7712cc724fd..aded7a26c7465 100644
--- a/recipes/bioconductor-icare/meta.yaml
+++ b/recipes/bioconductor-icare/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "iCARE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3d89ab78df6a178cd7ddeffbba91211a
+  md5: 9230befcb5d16fdc72a6f87b50397789
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-icare", max_pin="x.x") }}'
 # Suggests: RUnit, BiocGenerics
 requirements:
   host:
diff --git a/recipes/bioconductor-icens/meta.yaml b/recipes/bioconductor-icens/meta.yaml
index 36bc7e42950fe..ee1fb6954e914 100644
--- a/recipes/bioconductor-icens/meta.yaml
+++ b/recipes/bioconductor-icens/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "Icens" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 916d3bb72a63cbebfe3890bc15003075
+  md5: 07481f23c5b4fdfe9ff465e5a57e33c2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-icens", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-icetea/meta.yaml b/recipes/bioconductor-icetea/meta.yaml
index 0ca22f27c1f24..916fb97d57978 100644
--- a/recipes/bioconductor-icetea/meta.yaml
+++ b/recipes/bioconductor-icetea/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.1" %}
+{% set version = "1.20.0" %}
 {% set name = "icetea" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,55 +11,56 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: fba08db47284c487627226270b90e5bd
+  md5: 2e7e3e32b56771089cefcc4295456e49
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-icetea", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, Rsubread (>= 1.29.0), testthat
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-csaw >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-csaw >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'bioconductor-txdb.dmelanogaster.ucsc.dm6.ensgene >=3.12.0,<3.13.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-ggplot2
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-csaw >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-csaw >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'bioconductor-txdb.dmelanogaster.ucsc.dm6.ensgene >=3.12.0,<3.13.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-ggplot2
 test:
diff --git a/recipes/bioconductor-icheck/meta.yaml b/recipes/bioconductor-icheck/meta.yaml
index 6a71607982e40..51520bfa018ee 100644
--- a/recipes/bioconductor-icheck/meta.yaml
+++ b/recipes/bioconductor-icheck/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "iCheck" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8b3e3bfe2b8158dd1cc31da69c188f57
+  md5: 4404db494985157058a6af6d8c29b0c1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-icheck", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-geneselectmmd >=2.44.0,<2.45.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-geneselectmmd >=2.46.0,<2.47.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-gplots
     - r-lmtest
@@ -34,12 +35,12 @@ requirements:
     - r-rgl
     - r-scatterplot3d
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-geneselectmmd >=2.44.0,<2.45.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-geneselectmmd >=2.46.0,<2.47.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-gplots
     - r-lmtest
diff --git a/recipes/bioconductor-ichip/meta.yaml b/recipes/bioconductor-ichip/meta.yaml
index 3a6c2a4d17a41..6a06380a203bd 100644
--- a/recipes/bioconductor-ichip/meta.yaml
+++ b/recipes/bioconductor-ichip/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.54.0" %}
+{% set version = "1.56.0" %}
 {% set name = "iChip" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 656d9d28237e68c9e522a9605fee4716
+  md5: d50d8db2c1de02e8a1df4de992aa64f4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ichip", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-iclusterplus/build.sh b/recipes/bioconductor-iclusterplus/build.sh
index 26b985e8ff4dc..0f7012ed24200 100644
--- a/recipes/bioconductor-iclusterplus/build.sh
+++ b/recipes/bioconductor-iclusterplus/build.sh
@@ -9,4 +9,4 @@ CXX98=$CXX
 CXX11=$CXX
 CXX14=$CXX" > ~/.R/Makevars
 autoreconf -fi
-$R CMD INSTALL --build .
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-iclusterplus/meta.yaml b/recipes/bioconductor-iclusterplus/meta.yaml
index 92bc2e5c98015..b600ba560fb04 100644
--- a/recipes/bioconductor-iclusterplus/meta.yaml
+++ b/recipes/bioconductor-iclusterplus/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.1" %}
+{% set version = "1.38.0" %}
 {% set name = "iClusterPlus" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,14 +11,15 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 951e6b1ec59b05d436130fc3b9b7c6f9
+  md5: 133b682823ec6ab41f6f6579413d461d
   patches:
     - 0001-Detect-compiler-with-gfortran-suffix.patch
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-iclusterplus", max_pin="x.x") }}'
 # Suggests: RUnit, BiocGenerics
 requirements:
   host:
@@ -42,4 +43,6 @@ about:
   summary: 'Integrative clustering of multi-type genomic data'
   description: 'Integrative clustering of multiple genomic data using a joint latent variable model.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
-
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/bioconductor-icnv/meta.yaml b/recipes/bioconductor-icnv/meta.yaml
index 51defd03f7da6..b1c5eb62c6e2d 100644
--- a/recipes/bioconductor-icnv/meta.yaml
+++ b/recipes/bioconductor-icnv/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "iCNV" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1064b8c5da8ebf9cd18a1fd0cebb6caf
+  md5: ff1415b4764c18a3609c4eb3b6d65a30
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-icnv", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, WES.1KG.WUGSC
 requirements:
   host:
-    - 'bioconductor-codex >=1.32.0,<1.33.0'
+    - 'bioconductor-codex >=1.34.0,<1.35.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -31,7 +32,7 @@ requirements:
     - r-tidyr
     - r-truncnorm
   run:
-    - 'bioconductor-codex >=1.32.0,<1.33.0'
+    - 'bioconductor-codex >=1.34.0,<1.35.0'
     - r-base
     - r-data.table
     - r-dplyr
diff --git a/recipes/bioconductor-icobra/meta.yaml b/recipes/bioconductor-icobra/meta.yaml
index 72fc1539129e6..0a0ef086aa674 100644
--- a/recipes/bioconductor-icobra/meta.yaml
+++ b/recipes/bioconductor-icobra/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "iCOBRA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 778bba4697e06cbecbb9f0e8e920c4b0
+  md5: dc297e102e2b6ee717a494f652a6d6bf
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-icobra", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-dplyr
     - r-dt
@@ -35,7 +36,7 @@ requirements:
     - r-shinydashboard
     - r-upsetr
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-dplyr
     - r-dt
diff --git a/recipes/bioconductor-ideal/build_failure.linux-64.yaml b/recipes/bioconductor-ideal/build_failure.linux-64.yaml
new file mode 100644
index 0000000000000..19d2276079b9f
--- /dev/null
+++ b/recipes/bioconductor-ideal/build_failure.linux-64.yaml
@@ -0,0 +1,106 @@
+recipe_sha: 67de6b5cdabab9789f4141c7b4df882eca324c62877eb622c009398c5cadd390  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+category: |-
+  dependency issue
+log: |2-
+
+  Leaving build/test directories:
+    Work:
+   /opt/conda/conda-bld/work
+    Test:
+   /opt/conda/conda-bld/test_tmp
+  Leaving build/test environments:
+    Test:
+  source activate  /opt/conda/conda-bld/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl
+    Build:
+  source activate  /opt/conda/conda-bld/_build_env
+
+
+  Traceback (most recent call last):
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 141, in mamba_get_install_actions
+      solution = solver.solve_for_action(_specs, prefix)
+    File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 244, in solve_for_action
+      t = self.solve(specs)
+    File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 234, in solve
+      raise RuntimeError("Solver could not find solution."  error_string)
+  RuntimeError: Solver could not find solution.Mamba failed to solve:
+   - r-plotly
+   - r-shinyace
+   - r-shinybs
+   - r-upsetr
+   - bioconductor-limma >=3.58.0,<3.59.0
+   - r-rintrojs
+   - r-base64enc
+   - bioconductor-iranges >=2.36.0,<2.37.0
+   - bioconductor-goseq >=1.54.0,<1.55.0
+   - bioconductor-s4vectors >=0.40.0,<0.41.0
+   - r-gplots
+   - r-rentrez
+   - bioconductor-topgo >=2.54.0,<2.55.0
+   - r-base 4.3.*
+   - r-shinydashboard
+   - bioconductor-deseq2 >=1.42.0,<1.43.0
+   - bioconductor-go.db >=3.18.0,<3.19.0
+   - bioconductor-genomicranges >=1.54.0,<1.55.0
+   - r-heatmaply
+   - r-knitr
+   - r-shiny >=0.12.0
+   - bioconductor-gostats >=2.68.0,<2.69.0
+   - r-dplyr
+   - bioconductor-pcaexplorer >=2.28.0,<2.29.0
+   - bioconductor-biocparallel >=1.36.0,<1.37.0
+   - r-dt
+   - r-ggplot2 >=2.0.0
+   - r-ggrepel
+   - bioconductor-annotationdbi >=1.64.0,<1.65.0
+   - bioconductor-ihw >=1.30.0,<1.31.0
+   - bioconductor-summarizedexperiment >=1.32.0,<1.33.0
+   - r-stringr
+   - r-pheatmap
+   - r-rlang
+   - r-rmarkdown
+
+  with channels:
+   - file:///opt/host-conda-bld
+   - conda-forge
+   - bioconda
+   - defaults
+
+  The reported errors are:
+  - Encountered problems while solving:
+  -   - nothing provides requested bioconductor-ihw >=1.30.0,<1.31.0
+  -
+
+  During handling of the above exception, another exception occurred:
+
+  Traceback (most recent call last):
+    File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
+      sys.exit(main())
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
+      call_conda_build(action, config)
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
+      result = api.build(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
+      return build_tree(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
+      packages_from_this = build(metadata, stats,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2038, in build
+      output_metas = expand_outputs([(m, need_source_download, need_reparse_in_env)])
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 787, in expand_outputs
+      for (output_dict, m) in deepcopy(_m).get_output_metadata_set(permit_unsatisfiable_variants=False):
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/metadata.py", line 2524, in get_output_metadata_set
+      conda_packages = finalize_outputs_pass(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/metadata.py", line 884, in finalize_outputs_pass
+      fm = finalize_metadata(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 547, in finalize_metadata
+      build_unsat, host_unsat = add_upstream_pins(m,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 409, in add_upstream_pins
+      host_deps, host_unsat, extra_run_specs_from_host = _read_upstream_pin_files(m, 'host',
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 374, in _read_upstream_pin_files
+      deps, actions, unsat = get_env_dependencies(m, env, m.config.variant,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 131, in get_env_dependencies
+      actions = environ.get_install_actions(tmpdir, tuple(dependencies), env,
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 150, in mamba_get_install_actions
+      raise err
+  conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("bioconductor-ihw[version='>=1.30.0,<1.31.0']")}
+# Last 100 lines of the build log.
diff --git a/recipes/bioconductor-ideal/meta.yaml b/recipes/bioconductor-ideal/meta.yaml
index 13555fc84538f..3cbe305f544a5 100644
--- a/recipes/bioconductor-ideal/meta.yaml
+++ b/recipes/bioconductor-ideal/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.1" %}
+{% set version = "1.26.0" %}
 {% set name = "ideal" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 24f07cba791fbdfe1bdf0539b78de343
+  md5: d4714305a9be71a4b4c71da0fb624148
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ideal", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle, markdown, airway, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene, DEFormats, edgeR
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-goseq >=1.52.0,<1.53.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
-    - 'bioconductor-ihw >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-pcaexplorer >=2.26.0,<2.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-goseq >=1.54.0,<1.55.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
+    - 'bioconductor-ihw >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-pcaexplorer >=2.28.0,<2.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - r-base64enc
     - r-dplyr
@@ -57,20 +58,20 @@ requirements:
     - r-stringr
     - r-upsetr
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-goseq >=1.52.0,<1.53.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
-    - 'bioconductor-ihw >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-pcaexplorer >=2.26.0,<2.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-goseq >=1.54.0,<1.55.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
+    - 'bioconductor-ihw >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-pcaexplorer >=2.28.0,<2.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - r-base64enc
     - r-dplyr
diff --git a/recipes/bioconductor-ideoviz/meta.yaml b/recipes/bioconductor-ideoviz/meta.yaml
index 0495cf2897371..3e85ceeaf3c0f 100644
--- a/recipes/bioconductor-ideoviz/meta.yaml
+++ b/recipes/bioconductor-ideoviz/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.37.0" %}
 {% set name = "IdeoViz" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1a1eaca9a4537ad7486a764085dde3b6
+  md5: 187ebcc3f7a11124ebbe137722672ffc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ideoviz", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-rcolorbrewer
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-rcolorbrewer
 test:
diff --git a/recipes/bioconductor-idiogram/meta.yaml b/recipes/bioconductor-idiogram/meta.yaml
index a94f98655c26c..6fa4e077bdb2d 100644
--- a/recipes/bioconductor-idiogram/meta.yaml
+++ b/recipes/bioconductor-idiogram/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.76.0" %}
+{% set version = "1.78.0" %}
 {% set name = "idiogram" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 7ce45f1fab62bc32ee380625a7a756f8
+  md5: 2ee94ac9719c77f8a2f6b691662a7909
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-idiogram", max_pin="x.x") }}'
   noarch: generic
 # Suggests: hu6800.db, hgu95av2.db, golubEsets
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-plotrix
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-plotrix
 test:
diff --git a/recipes/bioconductor-idpr/meta.yaml b/recipes/bioconductor-idpr/meta.yaml
index 5392789f5d86e..3450da1b12fbd 100644
--- a/recipes/bioconductor-idpr/meta.yaml
+++ b/recipes/bioconductor-idpr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "idpr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: b3a120730d6d86dc3a8c8de14a3e5e67
+  md5: 16fb786981b0e04b0d094c4867303555
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-idpr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, msa, ape, testthat, seqinr
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - 'r-dplyr >=0.8.5'
     - 'r-ggplot2 >=3.3.0'
@@ -30,7 +31,7 @@ requirements:
     - 'r-plyr >=1.8.6'
     - 'r-rlang >=0.4.6'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - 'r-dplyr >=0.8.5'
     - 'r-ggplot2 >=3.3.0'
diff --git a/recipes/bioconductor-idr2d/meta.yaml b/recipes/bioconductor-idr2d/meta.yaml
index cd5ce13ee1773..f2c297502502b 100644
--- a/recipes/bioconductor-idr2d/meta.yaml
+++ b/recipes/bioconductor-idr2d/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "idr2d" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: b990982c2b666e7dca09c02ab628b038
+  md5: 6662b2b18dc8c6029ad40099c5fcd6a7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-idr2d", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DT (>= 0.4), htmltools (>= 0.3.6), knitr (>= 1.20), rmarkdown (>= 1.10), roxygen2 (>= 6.1.0), testthat (>= 2.1.0)
 # SystemRequirements: Python (>= 3.5.0), hic-straw
 requirements:
   host:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - 'r-dplyr >=0.7.6'
     - 'r-futile.logger >=1.4.3'
@@ -35,9 +36,9 @@ requirements:
     - 'r-scales >=1.0.0'
     - 'r-stringr >=1.3.1'
   run:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - 'r-dplyr >=0.7.6'
     - 'r-futile.logger >=1.4.3'
diff --git a/recipes/bioconductor-ifaa/meta.yaml b/recipes/bioconductor-ifaa/meta.yaml
index 2a4a8b2311405..59789aaa6e7d1 100644
--- a/recipes/bioconductor-ifaa/meta.yaml
+++ b/recipes/bioconductor-ifaa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "IFAA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2fed85b602afd876a82a6f150f7edcc6
+  md5: 393ac86513ddc9adf474c654b5127394
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ifaa", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, RUnit, BiocGenerics, BiocStyle
 requirements:
   host:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-desctools
     - 'r-doparallel >=1.0.11'
@@ -36,8 +37,8 @@ requirements:
     - r-parallelly
     - r-stringr
   run:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-desctools
     - 'r-doparallel >=1.0.11'
diff --git a/recipes/bioconductor-igc/meta.yaml b/recipes/bioconductor-igc/meta.yaml
index 3f15202e91f05..f9eeb7f8b07b8 100644
--- a/recipes/bioconductor-igc/meta.yaml
+++ b/recipes/bioconductor-igc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "iGC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b1b2d13eef5b7eb28baba5a0d230f216
+  md5: 14007fadd58eaea3e345ba53a279f783
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-igc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
diff --git a/recipes/bioconductor-iggeneusage/meta.yaml b/recipes/bioconductor-iggeneusage/meta.yaml
index 09daed914d666..23adf82cfe2f0 100644
--- a/recipes/bioconductor-iggeneusage/meta.yaml
+++ b/recipes/bioconductor-iggeneusage/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "IgGeneUsage" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2d8a81fe690de659ee3671911b6079a9
+  md5: 231f1af3465f435ca3bb099a93e51e5b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-iggeneusage", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 2.1.0), ggplot2, ggforce, gridExtra, ggrepel
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-bh >=1.66.0'
     - 'r-rcpp >=0.12.0'
@@ -31,10 +32,11 @@ requirements:
     - 'r-rstan >=2.18.1'
     - 'r-rstantools >=2.2.0'
     - 'r-stanheaders >=2.18.0'
+    - r-tidyr
     - libblas
     - liblapack
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-bh >=1.66.0'
     - 'r-rcpp >=0.12.0'
@@ -44,6 +46,7 @@ requirements:
     - 'r-rstan >=2.18.1'
     - 'r-rstantools >=2.2.0'
     - 'r-stanheaders >=2.18.0'
+    - r-tidyr
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
diff --git a/recipes/bioconductor-igvr/meta.yaml b/recipes/bioconductor-igvr/meta.yaml
index 3e29ec06ef9a8..cb1fe14f9bcc1 100644
--- a/recipes/bioconductor-igvr/meta.yaml
+++ b/recipes/bioconductor-igvr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "igvR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4462dcfae2acb5eac59801713beae32b
+  md5: 318b9d244079439576763028e1731a18
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-igvr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocStyle, knitr, rmarkdown, MotifDb, seqLogo
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-browserviz >=2.22.0,<2.23.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-browserviz >=2.24.0,<2.25.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-httpuv
     - r-httr
     - r-rcolorbrewer
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-browserviz >=2.22.0,<2.23.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-browserviz >=2.24.0,<2.25.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-httpuv
     - r-httr
diff --git a/recipes/bioconductor-chipxpress/build_failure.linux-64.yaml b/recipes/bioconductor-ihw/build_failure.linux-64.yaml
similarity index 82%
rename from recipes/bioconductor-chipxpress/build_failure.linux-64.yaml
rename to recipes/bioconductor-ihw/build_failure.linux-64.yaml
index 553b01a33d979..49c95de2d51b7 100644
--- a/recipes/bioconductor-chipxpress/build_failure.linux-64.yaml
+++ b/recipes/bioconductor-ihw/build_failure.linux-64.yaml
@@ -1,33 +1,35 @@
-recipe_sha: a49a4fee0ecc177366a04192b85dfff0fac7cc562b60204a83649bffef6c0934  # The commit at which this recipe failed to build.
+recipe_sha: df348495dada1a372be82599b073dacb131efa9c20367ac100389a77a59630c4  # The commit at which this recipe failed to build.
 skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
 log: |-
+  conda-forge/linux-64    [2K[1A[2K[0G[] 4.9s
+  conda-forge/linux-64 100%[2K[1A[2K[0G[] 5.0s
+  conda-forge/linux-64 100%[2K[1A[2K[0G[] 5.1s
+  conda-forge/linux-64 100%[2K[1A[2K[0G[] 5.2s
   conda-forge/linux-64 100%[2K[1A[2K[0Gconda-forge/linux-64
   [?25h[34mReloading output folder: [0m[34m/opt/conda/[0m[34mconda-bld[0m
   [?25l[2K[0G[] 0.0s
   [2K[1A[2K[0Gopt/conda/conda-bld/linux-64                        ??.?MB @  ??.?MB/s 0 failed  0.0s
-  opt/conda/conda-bld/noarch                         127.0 B @ 992.2kB/s  0.0s
+  opt/conda/conda-bld/noarch                         127.0 B @   2.2MB/s  0.0s
   [?25h[34mReloading output folder: [0m[34m/opt/conda/[0m[34mconda-bld[0m
   [?25l[2K[0G[] 0.0s
   [2K[1A[2K[0Gopt/conda/conda-bld/linux-64                        ??.?MB @  ??.?MB/s 0 failed  0.0s
-  opt/conda/conda-bld/noarch                         127.0 B @   2.3MB/s  0.0s
+  opt/conda/conda-bld/noarch                         127.0 B @   2.2MB/s  0.0s
   [?25hMamba failed to solve:
-   - bioconductor-biobase >=2.60.0,<2.61.0
-   - r-bigmemory
-   - bioconductor-frma >=1.52.0,<1.53.0
+   - bioconductor-lpsymphony >=1.30.0,<1.31.0
    - r-base 4.3.*
-   - bioconductor-chipxpressdata >=1.38.0,<1.39.0
-   - bioconductor-affy >=1.78.0,<1.79.0
-   - bioconductor-geoquery >=2.68.0,<2.69.0
-   - r-biganalytics
+   - r-slam
+   - r-fdrtool
+   - bioconductor-biocgenerics >=0.48.0,<0.49.0
 
   with channels:
+   - file:///opt/host-conda-bld
    - conda-forge
    - bioconda
    - defaults
 
   The reported errors are:
   - Encountered problems while solving:
-  -   - nothing provides requested bioconductor-chipxpressdata >=1.38.0,<1.39.0
+  -   - nothing provides requested bioconductor-lpsymphony >=1.30.0,<1.31.0
   -
 
   Leaving build/test directories:
@@ -50,23 +52,21 @@ log: |-
     File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 234, in solve
       raise RuntimeError("Solver could not find solution."  error_string)
   RuntimeError: Solver could not find solution.Mamba failed to solve:
-   - bioconductor-biobase >=2.60.0,<2.61.0
-   - r-bigmemory
-   - bioconductor-frma >=1.52.0,<1.53.0
+   - bioconductor-lpsymphony >=1.30.0,<1.31.0
    - r-base 4.3.*
-   - bioconductor-chipxpressdata >=1.38.0,<1.39.0
-   - bioconductor-affy >=1.78.0,<1.79.0
-   - bioconductor-geoquery >=2.68.0,<2.69.0
-   - r-biganalytics
+   - r-slam
+   - r-fdrtool
+   - bioconductor-biocgenerics >=0.48.0,<0.49.0
 
   with channels:
+   - file:///opt/host-conda-bld
    - conda-forge
    - bioconda
    - defaults
 
   The reported errors are:
   - Encountered problems while solving:
-  -   - nothing provides requested bioconductor-chipxpressdata >=1.38.0,<1.39.0
+  -   - nothing provides requested bioconductor-lpsymphony >=1.30.0,<1.31.0
   -
 
   During handling of the above exception, another exception occurred:
@@ -100,5 +100,5 @@ log: |-
       actions = environ.get_install_actions(tmpdir, tuple(dependencies), env,
     File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 150, in mamba_get_install_actions
       raise err
-  conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("bioconductor-chipxpressdata[version='>=1.38.0,<1.39.0']")}
+  conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("bioconductor-lpsymphony[version='>=1.30.0,<1.31.0']")}
 # Last 100 lines of the build log.
diff --git a/recipes/bioconductor-ihw/meta.yaml b/recipes/bioconductor-ihw/meta.yaml
index 18b067cac3df1..74e07fd5f88d8 100644
--- a/recipes/bioconductor-ihw/meta.yaml
+++ b/recipes/bioconductor-ihw/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "IHW" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 03d60f5df56eb3abb74d8b8c8f7788a2
+  md5: aa53165d5f689e8bfdebb02838ae9dab
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ihw", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ggplot2, dplyr, gridExtra, scales, DESeq2, airway, testthat, Matrix, BiocStyle, knitr, rmarkdown, devtools
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-lpsymphony >=1.28.0,<1.29.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-lpsymphony >=1.30.0,<1.31.0'
     - r-base
     - r-fdrtool
     - r-slam
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-lpsymphony >=1.28.0,<1.29.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-lpsymphony >=1.30.0,<1.31.0'
     - r-base
     - r-fdrtool
     - r-slam
diff --git a/recipes/regenie/build_failure.linux-64.yaml b/recipes/bioconductor-ihwpaper/build_failure.linux-64.yaml
similarity index 77%
rename from recipes/regenie/build_failure.linux-64.yaml
rename to recipes/bioconductor-ihwpaper/build_failure.linux-64.yaml
index 83c34bc1cdd6d..0d1d099182dc8 100644
--- a/recipes/regenie/build_failure.linux-64.yaml
+++ b/recipes/bioconductor-ihwpaper/build_failure.linux-64.yaml
@@ -1,29 +1,22 @@
-recipe_sha: 79124a9aa8c8c4bfc4ac1b2a6d10a5fa7bbc0886136237cccdac70de0b0ca6bc  # The commit at which this recipe failed to build.
+recipe_sha: 366efc448b56ba6b7e86a876417279bedf04156e08c60e0c035fe672c82e0ddc  # The commit at which this recipe failed to build.
 skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
-log: |-
-  opt/conda/conda-bld/noarch
-  [?25hMamba failed to solve:
-   - libgfortran-ng
-   - bgenix >=1.1.7
-   - zstd 1.5.*
-   - zlib 1.2.*
-   - mkl-include
-   - libgfortran5 >=12.2.0
-   - boost-cpp 1.78.0.*
-   - _openmp_mutex >=4.5
-   - mkl >=2020.4
-   - liblapack * *mkl
-   - libstdcxx-ng >=12
+log: |2-
+   - r-ggplot2
    - libgcc-ng >=12
+   - r-rcpp
+   - libstdcxx-ng >=12
+   - bioconductor-biobase >=2.62.0,<2.63.0
+   - r-fdrtool
 
   with channels:
+   - file:///opt/host-conda-bld
    - conda-forge
    - bioconda
    - defaults
 
   The reported errors are:
   - Encountered problems while solving:
-  -   - package bgenix-1.1.7-h00c1625_0 requires libgfortran4 >=7.5.0, but none of the providers can be installed
+  -   - nothing provides requested bioconductor-ihw >=1.30.0,<1.31.0
   -
 
   Leaving build/test directories:
@@ -41,32 +34,39 @@ log: |-
   Traceback (most recent call last):
     File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 141, in mamba_get_install_actions
       solution = solver.solve_for_action(_specs, prefix)
-    File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 230, in solve_for_action
+    File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 244, in solve_for_action
       t = self.solve(specs)
-    File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 220, in solve
+    File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 234, in solve
       raise RuntimeError("Solver could not find solution."  error_string)
   RuntimeError: Solver could not find solution.Mamba failed to solve:
-   - libgfortran-ng
-   - bgenix >=1.1.7
-   - zstd 1.5.*
-   - zlib 1.2.*
-   - mkl-include
-   - libgfortran5 >=12.2.0
-   - boost-cpp 1.78.0.*
-   - _openmp_mutex >=4.5
-   - mkl >=2020.4
-   - liblapack * *mkl
-   - libstdcxx-ng >=12
+   - bioconductor-biocparallel >=1.36.0,<1.37.0
+   - bioconductor-biocgenerics >=0.48.0,<0.49.0
+   - liblapack 3.9.* *netlib
+   - libblas 3.9.* *netlib
+   - bioconductor-deseq2 >=1.42.0,<1.43.0
+   - r-dplyr
+   - r-base 4.3.*
+   - bioconductor-genefilter >=1.84.0,<1.85.0
+   - bioconductor-ihw >=1.30.0,<1.31.0
+   - bioconductor-qvalue >=2.34.0,<2.35.0
+   - r-cowplot
+   - bioconductor-summarizedexperiment >=1.32.0,<1.33.0
+   - r-ggplot2
    - libgcc-ng >=12
+   - r-rcpp
+   - libstdcxx-ng >=12
+   - bioconductor-biobase >=2.62.0,<2.63.0
+   - r-fdrtool
 
   with channels:
+   - file:///opt/host-conda-bld
    - conda-forge
    - bioconda
    - defaults
 
   The reported errors are:
   - Encountered problems while solving:
-  -   - package bgenix-1.1.7-h00c1625_0 requires libgfortran4 >=7.5.0, but none of the providers can be installed
+  -   - nothing provides requested bioconductor-ihw >=1.30.0,<1.31.0
   -
 
   During handling of the above exception, another exception occurred:
@@ -100,5 +100,5 @@ log: |-
       actions = environ.get_install_actions(tmpdir, tuple(dependencies), env,
     File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 150, in mamba_get_install_actions
       raise err
-  conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("bgenix==1.1.7=h00c1625_0"), MatchSpec("libgfortran4[version='>=7.5.0']")}
+  conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("bioconductor-ihw[version='>=1.30.0,<1.31.0']")}
 # Last 100 lines of the build log.
diff --git a/recipes/rmats2sashimiplot/build_failure.osx-64.yaml b/recipes/bioconductor-ihwpaper/build_failure.osx-64.yaml
similarity index 50%
rename from recipes/rmats2sashimiplot/build_failure.osx-64.yaml
rename to recipes/bioconductor-ihwpaper/build_failure.osx-64.yaml
index 8ac86c6c647cc..e81f7f57656d0 100644
--- a/recipes/rmats2sashimiplot/build_failure.osx-64.yaml
+++ b/recipes/bioconductor-ihwpaper/build_failure.osx-64.yaml
@@ -1,34 +1,17 @@
-recipe_sha: 818b19264e031ab0aafc69a65856602ab4de67b68aed3fe7e3117d898e0765f6  # The commit at which this recipe failed to build.
+recipe_sha: 366efc448b56ba6b7e86a876417279bedf04156e08c60e0c035fe672c82e0ddc  # The commit at which this recipe failed to build.
 skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+category: |-
+  dependency issue
 log: |2-
-      libffi:          3.4.2-h0d85af4_5           conda-forge
-      libsqlite:       3.42.0-h58db7d2_0          conda-forge
-      libzlib:         1.2.13-hfd90126_4          conda-forge
-      ncurses:         6.3-h96cf925_1             conda-forge
-      openssl:         3.1.1-h8a1eda9_1           conda-forge
-      pip:             23.1.2-pyhd8ed1ab_0        conda-forge
-      python:          3.10.11-he7542f4_0_cpython conda-forge
-      readline:        8.2-h9e318b2_1             conda-forge
-      setuptools:      67.7.2-pyhd8ed1ab_0        conda-forge
-      tk:              8.6.12-h5dbffcc_0          conda-forge
-      tzdata:          2023c-h71feb2d_0           conda-forge
-      wheel:           0.40.0-pyhd8ed1ab_0        conda-forge
-      xz:              5.2.6-h775f41a_0           conda-forge
-
-  Preparing transaction: ...working... done
-  Verifying transaction: ...working... done
-  Executing transaction: ...working... done
-  Reloading output folder: /opt/mambaforge/envs/bioconda/conda-bld
-  Reloading output folder: /opt/mambaforge/envs/bioconda/conda-bld
-  Mamba failed to solve:
-   - bedtools
-   - numpy
-   - scipy
-   - samtools
-   - matplotlib 3.3.*
-   - python_abi 3.10.* *_cp310
-   - pysam
-   - python >=3.10,<3.11.0a0
+   - r-dplyr
+   - bioconductor-biocparallel >=1.36.0,<1.37.0
+   - libcxx >=14
+   - bioconductor-qvalue >=2.34.0,<2.35.0
+   - bioconductor-biobase >=2.62.0,<2.63.0
+   - bioconductor-genefilter >=1.84.0,<1.85.0
+   - bioconductor-biocgenerics >=0.48.0,<0.49.0
+   - bioconductor-summarizedexperiment >=1.32.0,<1.33.0
+   - r-cowplot
 
   with channels:
    - conda-forge
@@ -37,7 +20,7 @@ log: |2-
 
   The reported errors are:
   - Encountered problems while solving:
-  -   - package matplotlib-3.3.1-0 requires matplotlib-base >=3.3.1,<3.3.2.0a0, but none of the providers can be installed
+  -   - nothing provides requested bioconductor-ihw >=1.30.0,<1.31.0
   -
 
   Leaving build/test directories:
@@ -55,19 +38,28 @@ log: |2-
   Traceback (most recent call last):
     File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 141, in mamba_get_install_actions
       solution = solver.solve_for_action(_specs, prefix)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/core/solver.py", line 230, in solve_for_action
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/core/solver.py", line 244, in solve_for_action
       t = self.solve(specs)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/core/solver.py", line 220, in solve
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/core/solver.py", line 234, in solve
       raise RuntimeError("Solver could not find solution."  error_string)
   RuntimeError: Solver could not find solution.Mamba failed to solve:
-   - bedtools
-   - numpy
-   - scipy
-   - samtools
-   - matplotlib 3.3.*
-   - python_abi 3.10.* *_cp310
-   - pysam
-   - python >=3.10,<3.11.0a0
+   - r-ggplot2
+   - bioconductor-ihw >=1.30.0,<1.31.0
+   - liblapack 3.9.* *netlib
+   - bioconductor-deseq2 >=1.42.0,<1.43.0
+   - libblas 3.9.* *netlib
+   - r-fdrtool
+   - r-rcpp
+   - r-base 4.3.*
+   - r-dplyr
+   - bioconductor-biocparallel >=1.36.0,<1.37.0
+   - libcxx >=14
+   - bioconductor-qvalue >=2.34.0,<2.35.0
+   - bioconductor-biobase >=2.62.0,<2.63.0
+   - bioconductor-genefilter >=1.84.0,<1.85.0
+   - bioconductor-biocgenerics >=0.48.0,<0.49.0
+   - bioconductor-summarizedexperiment >=1.32.0,<1.33.0
+   - r-cowplot
 
   with channels:
    - conda-forge
@@ -76,7 +68,7 @@ log: |2-
 
   The reported errors are:
   - Encountered problems while solving:
-  -   - package matplotlib-3.3.1-0 requires matplotlib-base >=3.3.1,<3.3.2.0a0, but none of the providers can be installed
+  -   - nothing provides requested bioconductor-ihw >=1.30.0,<1.31.0
   -
 
   During handling of the above exception, another exception occurred:
@@ -92,13 +84,23 @@ log: |2-
       return build_tree(
     File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
       packages_from_this = build(metadata, stats,
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 2115, in build
-      create_build_envs(top_level_pkg, notest)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 1993, in create_build_envs
-      raise e
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 1972, in create_build_envs
-      environ.get_install_actions(m.config.test_prefix,
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 2038, in build
+      output_metas = expand_outputs([(m, need_source_download, need_reparse_in_env)])
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/render.py", line 787, in expand_outputs
+      for (output_dict, m) in deepcopy(_m).get_output_metadata_set(permit_unsatisfiable_variants=False):
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/metadata.py", line 2524, in get_output_metadata_set
+      conda_packages = finalize_outputs_pass(
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/metadata.py", line 884, in finalize_outputs_pass
+      fm = finalize_metadata(
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/render.py", line 547, in finalize_metadata
+      build_unsat, host_unsat = add_upstream_pins(m,
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/render.py", line 409, in add_upstream_pins
+      host_deps, host_unsat, extra_run_specs_from_host = _read_upstream_pin_files(m, 'host',
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/render.py", line 374, in _read_upstream_pin_files
+      deps, actions, unsat = get_env_dependencies(m, env, m.config.variant,
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/render.py", line 131, in get_env_dependencies
+      actions = environ.get_install_actions(tmpdir, tuple(dependencies), env,
     File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 150, in mamba_get_install_actions
       raise err
-  conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform osx-64: {MatchSpec("matplotlib==3.3.1=0"), MatchSpec("matplotlib-base[version='>=3.3.1,<3.3.2.0a0']")}
+  conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform osx-64: {MatchSpec("bioconductor-ihw[version='>=1.30.0,<1.31.0']")}
 # Last 100 lines of the build log.
diff --git a/recipes/bioconductor-ihwpaper/meta.yaml b/recipes/bioconductor-ihwpaper/meta.yaml
index c2f712f88e0a3..4251fc13e6670 100644
--- a/recipes/bioconductor-ihwpaper/meta.yaml
+++ b/recipes/bioconductor-ihwpaper/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "IHWpaper" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 282cb3abcd7ee2a5d1c34c468ce806c2
+  md5: 21e65d900bf8e6015fd006fbf01237d5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ihwpaper", max_pin="x.x") }}'
 # Suggests: testthat, RColorBrewer, wesanderson, scales, gridExtra, BiocStyle, knitr, rmarkdown, airway, locfdr, tidyr, latex2exp
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-ihw >=1.28.0,<1.29.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-ihw >=1.30.0,<1.31.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cowplot
     - r-dplyr
@@ -37,14 +38,14 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-ihw >=1.28.0,<1.29.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-ihw >=1.30.0,<1.31.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cowplot
     - r-dplyr
@@ -52,7 +53,7 @@ requirements:
     - r-ggplot2
     - r-rcpp
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
diff --git a/recipes/bioconductor-ihwpaper/post-link.sh b/recipes/bioconductor-ihwpaper/post-link.sh
index 8a0180657a601..cceb85018f40b 100644
--- a/recipes/bioconductor-ihwpaper/post-link.sh
+++ b/recipes/bioconductor-ihwpaper/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "ihwpaper-1.28.0"
+installBiocDataPackage.sh "ihwpaper-1.30.0"
diff --git a/recipes/bioconductor-illumina450probevariants.db/meta.yaml b/recipes/bioconductor-illumina450probevariants.db/meta.yaml
index 3106b6aca5224..1458b848396e0 100644
--- a/recipes/bioconductor-illumina450probevariants.db/meta.yaml
+++ b/recipes/bioconductor-illumina450probevariants.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "Illumina450ProbeVariants.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 362d8731f6c9067d58742be0d772a7ac
+  md5: ca34eec73a57e5f226b70a20ef706ee3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-illumina450probevariants.db", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-illumina450probevariants.db/post-link.sh b/recipes/bioconductor-illumina450probevariants.db/post-link.sh
index 46896196e904f..1d85e7fc79149 100644
--- a/recipes/bioconductor-illumina450probevariants.db/post-link.sh
+++ b/recipes/bioconductor-illumina450probevariants.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "illumina450probevariants.db-1.36.0"
+installBiocDataPackage.sh "illumina450probevariants.db-1.38.0"
diff --git a/recipes/bioconductor-illuminadatatestfiles/meta.yaml b/recipes/bioconductor-illuminadatatestfiles/meta.yaml
index b4c3b0c264549..b9af46bf149a1 100644
--- a/recipes/bioconductor-illuminadatatestfiles/meta.yaml
+++ b/recipes/bioconductor-illuminadatatestfiles/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "IlluminaDataTestFiles" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e11e060ddd803add7efac25b34ab2ff5
+  md5: 3afa4b143fbb1dd18b3a7acd8f2984b1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-illuminadatatestfiles", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-illuminadatatestfiles/post-link.sh b/recipes/bioconductor-illuminadatatestfiles/post-link.sh
index cc992fa91951b..a8b688442f90a 100644
--- a/recipes/bioconductor-illuminadatatestfiles/post-link.sh
+++ b/recipes/bioconductor-illuminadatatestfiles/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "illuminadatatestfiles-1.38.0"
+installBiocDataPackage.sh "illuminadatatestfiles-1.40.0"
diff --git a/recipes/bioconductor-illuminahumanmethylation27k.db/meta.yaml b/recipes/bioconductor-illuminahumanmethylation27k.db/meta.yaml
index 7ae72f80d8e3d..ae8bb8780986d 100644
--- a/recipes/bioconductor-illuminahumanmethylation27k.db/meta.yaml
+++ b/recipes/bioconductor-illuminahumanmethylation27k.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.4.8" %}
 {% set name = "IlluminaHumanMethylation27k.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 70586bda9db01d598723bb439c315367
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-illuminahumanmethylation27k.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-illuminahumanmethylation27kanno.ilmn12.hg19/meta.yaml b/recipes/bioconductor-illuminahumanmethylation27kanno.ilmn12.hg19/meta.yaml
index 13588a0775555..7a1f7e62ecb9c 100644
--- a/recipes/bioconductor-illuminahumanmethylation27kanno.ilmn12.hg19/meta.yaml
+++ b/recipes/bioconductor-illuminahumanmethylation27kanno.ilmn12.hg19/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.6.0" %}
 {% set name = "IlluminaHumanMethylation27kanno.ilmn12.hg19" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 765851336506120467c2e3cc6beef7ed
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-illuminahumanmethylation27kanno.ilmn12.hg19", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-illuminahumanmethylation27kmanifest/meta.yaml b/recipes/bioconductor-illuminahumanmethylation27kmanifest/meta.yaml
index 2c8526441bde7..f08b35ab5f4d1 100644
--- a/recipes/bioconductor-illuminahumanmethylation27kmanifest/meta.yaml
+++ b/recipes/bioconductor-illuminahumanmethylation27kmanifest/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.4.0" %}
 {% set name = "IlluminaHumanMethylation27kmanifest" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: c4cdda637dccf85f193342c7262b02a6
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-illuminahumanmethylation27kmanifest", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19/meta.yaml b/recipes/bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19/meta.yaml
index fb4c92a4c07bd..263014c5c77c9 100644
--- a/recipes/bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19/meta.yaml
+++ b/recipes/bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.6.1" %}
 {% set name = "IlluminaHumanMethylation450kanno.ilmn12.hg19" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: aeafc54d887b128ed265fa704a3efa42
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-illuminahumanmethylation450kmanifest/meta.yaml b/recipes/bioconductor-illuminahumanmethylation450kmanifest/meta.yaml
index 86f91eb9c31f9..9c9f591b02e13 100644
--- a/recipes/bioconductor-illuminahumanmethylation450kmanifest/meta.yaml
+++ b/recipes/bioconductor-illuminahumanmethylation450kmanifest/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.4.0" %}
 {% set name = "IlluminaHumanMethylation450kmanifest" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 664d1f5a3892974334faa26757269509
 build:
-  number: 15
+  number: 16
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-illuminahumanmethylation450kmanifest", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-illuminahumanmethylation450kprobe/meta.yaml b/recipes/bioconductor-illuminahumanmethylation450kprobe/meta.yaml
index e4b5db62fa0c1..19a1c6a35f21c 100644
--- a/recipes/bioconductor-illuminahumanmethylation450kprobe/meta.yaml
+++ b/recipes/bioconductor-illuminahumanmethylation450kprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.0.6" %}
 {% set name = "IlluminaHumanMethylation450kprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 84c31861fcbaddbf2a9c500b8d8d767d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-illuminahumanmethylation450kprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19/meta.yaml b/recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19/meta.yaml
index c49025c692ee2..54f90a3b90e8d 100644
--- a/recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19/meta.yaml
+++ b/recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.6.0" %}
 {% set name = "IlluminaHumanMethylationEPICanno.ilm10b2.hg19" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 6a8e2398a0f930aa7828a1412fb21e88
 build:
-  number: 14
+  number: 15
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b3.hg19/meta.yaml b/recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b3.hg19/meta.yaml
index db9900e6987cf..5f0e19275d213 100644
--- a/recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b3.hg19/meta.yaml
+++ b/recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b3.hg19/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.6.0" %}
 {% set name = "IlluminaHumanMethylationEPICanno.ilm10b3.hg19" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 2dac8e889486386eaea1bb7ce1beea2e
 build:
-  number: 14
+  number: 15
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-illuminahumanmethylationepicanno.ilm10b3.hg19", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19/meta.yaml b/recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19/meta.yaml
index 0b249a0348a72..70a78787f09b0 100644
--- a/recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19/meta.yaml
+++ b/recipes/bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.6.0" %}
 {% set name = "IlluminaHumanMethylationEPICanno.ilm10b4.hg19" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 2d0c05917bcbf9ba1e354380d4e17a77
 build:
-  number: 14
+  number: 15
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-illuminahumanmethylationepicmanifest/meta.yaml b/recipes/bioconductor-illuminahumanmethylationepicmanifest/meta.yaml
index 4bd377524a966..2f570b1de65ff 100644
--- a/recipes/bioconductor-illuminahumanmethylationepicmanifest/meta.yaml
+++ b/recipes/bioconductor-illuminahumanmethylationepicmanifest/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.3.0" %}
 {% set name = "IlluminaHumanMethylationEPICmanifest" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: c6b0268de177badfe0b8184002da7e16
 build:
-  number: 15
+  number: 16
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-illuminahumanmethylationepicmanifest", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-illuminahumanv1.db/meta.yaml b/recipes/bioconductor-illuminahumanv1.db/meta.yaml
index 8d558abb79012..cc147efd5d97d 100644
--- a/recipes/bioconductor-illuminahumanv1.db/meta.yaml
+++ b/recipes/bioconductor-illuminahumanv1.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.26.0" %}
 {% set name = "illuminaHumanv1.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 2c362256b7be2861b8bf6e0d1fe46786
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-illuminahumanv1.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-illuminahumanv2.db/meta.yaml b/recipes/bioconductor-illuminahumanv2.db/meta.yaml
index 9161dd42903b4..e86b530f95ba8 100644
--- a/recipes/bioconductor-illuminahumanv2.db/meta.yaml
+++ b/recipes/bioconductor-illuminahumanv2.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.26.0" %}
 {% set name = "illuminaHumanv2.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 006de5f671a9a68fb27a6b6bce39c555
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-illuminahumanv2.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-illuminahumanv2beadid.db/meta.yaml b/recipes/bioconductor-illuminahumanv2beadid.db/meta.yaml
index 2894b87d91690..b94e962adf513 100644
--- a/recipes/bioconductor-illuminahumanv2beadid.db/meta.yaml
+++ b/recipes/bioconductor-illuminahumanv2beadid.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.8.0" %}
 {% set name = "illuminaHumanv2BeadID.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: b5a2b2deaa9a9b245a141043e7bc5270
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-illuminahumanv2beadid.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-illuminahumanv3.db/meta.yaml b/recipes/bioconductor-illuminahumanv3.db/meta.yaml
index b0ca58eadc49d..004dc46800cdb 100644
--- a/recipes/bioconductor-illuminahumanv3.db/meta.yaml
+++ b/recipes/bioconductor-illuminahumanv3.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.26.0" %}
 {% set name = "illuminaHumanv3.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 7d9e7534f0b60f0e3e7473e545ef373d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-illuminahumanv3.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-illuminahumanv4.db/meta.yaml b/recipes/bioconductor-illuminahumanv4.db/meta.yaml
index 0c26073b8d705..e40ca66f6cf27 100644
--- a/recipes/bioconductor-illuminahumanv4.db/meta.yaml
+++ b/recipes/bioconductor-illuminahumanv4.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.26.0" %}
 {% set name = "illuminaHumanv4.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 42d554559ac0106dc71317ffaf466421
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-illuminahumanv4.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-illuminahumanwgdaslv3.db/meta.yaml b/recipes/bioconductor-illuminahumanwgdaslv3.db/meta.yaml
index e5dd2c30187ae..dcb880875fc8c 100644
--- a/recipes/bioconductor-illuminahumanwgdaslv3.db/meta.yaml
+++ b/recipes/bioconductor-illuminahumanwgdaslv3.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.26.0" %}
 {% set name = "illuminaHumanWGDASLv3.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 32e8e24555c16f6d0148438d4a841ab8
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-illuminahumanwgdaslv3.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-illuminahumanwgdaslv4.db/meta.yaml b/recipes/bioconductor-illuminahumanwgdaslv4.db/meta.yaml
index 5f61508cc064d..da9c7a5e9aa5d 100644
--- a/recipes/bioconductor-illuminahumanwgdaslv4.db/meta.yaml
+++ b/recipes/bioconductor-illuminahumanwgdaslv4.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.26.0" %}
 {% set name = "illuminaHumanWGDASLv4.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 4cc1f192de838f2b6c1b148706d354ca
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-illuminahumanwgdaslv4.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-illuminaio/meta.yaml b/recipes/bioconductor-illuminaio/meta.yaml
index 1f45cdc02f008..be0a242b5324f 100644
--- a/recipes/bioconductor-illuminaio/meta.yaml
+++ b/recipes/bioconductor-illuminaio/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.42.0" %}
+{% set version = "0.44.0" %}
 {% set name = "illuminaio" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: b049b6f3cf366b151994de20502d7df4
+  md5: 5bf0b60249c92ef8408564391a69a97d
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-illuminaio", max_pin="x.x") }}'
 # Suggests: RUnit, BiocGenerics, IlluminaDataTestFiles (>= 1.0.2), BiocStyle
 requirements:
   host:
@@ -40,6 +41,8 @@ about:
   description: 'Tools for parsing Illumina''s microarray output files, including IDAT.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:illuminaio
   parent_recipe:
diff --git a/recipes/bioconductor-illuminamousev1.db/meta.yaml b/recipes/bioconductor-illuminamousev1.db/meta.yaml
index 9a4c1ebb7aab7..f0095683a0190 100644
--- a/recipes/bioconductor-illuminamousev1.db/meta.yaml
+++ b/recipes/bioconductor-illuminamousev1.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.26.0" %}
 {% set name = "illuminaMousev1.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 13818c3b9acabe75550492bbe638fc05
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-illuminamousev1.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-illuminamousev1p1.db/meta.yaml b/recipes/bioconductor-illuminamousev1p1.db/meta.yaml
index 4403ddfb1b720..e2dbd5a55ed59 100644
--- a/recipes/bioconductor-illuminamousev1p1.db/meta.yaml
+++ b/recipes/bioconductor-illuminamousev1p1.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.26.0" %}
 {% set name = "illuminaMousev1p1.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: f6a4af01480a6f8d1d2d9b9b64a2b073
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-illuminamousev1p1.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-illuminamousev2.db/meta.yaml b/recipes/bioconductor-illuminamousev2.db/meta.yaml
index 4c6f1570a86b9..405b1d50f2aa1 100644
--- a/recipes/bioconductor-illuminamousev2.db/meta.yaml
+++ b/recipes/bioconductor-illuminamousev2.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.26.0" %}
 {% set name = "illuminaMousev2.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: fba228a71f264f976d8cdb035861974d
 build:
-  number: 16
+  number: 17
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-illuminamousev2.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-illuminaratv1.db/meta.yaml b/recipes/bioconductor-illuminaratv1.db/meta.yaml
index 0337c5cbcc114..68fc32da96338 100644
--- a/recipes/bioconductor-illuminaratv1.db/meta.yaml
+++ b/recipes/bioconductor-illuminaratv1.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.26.0" %}
 {% set name = "illuminaRatv1.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 5de2324d7b96c0cdb3301ef269341aa8
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-illuminaratv1.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-imas/meta.yaml b/recipes/bioconductor-imas/meta.yaml
index f68bfd0d5c84f..9000f1e30f504 100644
--- a/recipes/bioconductor-imas/meta.yaml
+++ b/recipes/bioconductor-imas/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "IMAS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: dc40485d764674bc1b01b1b5dccc80fc
+  md5: c86deaedf1d19981dbfcea7a3b53d331
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-imas", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-ivas >=2.20.0,<2.21.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-ivas >=2.22.0,<2.23.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-doparallel
     - r-foreach
@@ -43,17 +44,17 @@ requirements:
     - r-matrix
     - r-survival
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-ivas >=2.20.0,<2.21.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-ivas >=2.22.0,<2.23.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-doparallel
     - r-foreach
diff --git a/recipes/bioconductor-imcdatasets/meta.yaml b/recipes/bioconductor-imcdatasets/meta.yaml
index 2208795414271..50be0d4514827 100644
--- a/recipes/bioconductor-imcdatasets/meta.yaml
+++ b/recipes/bioconductor-imcdatasets/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "imcdatasets" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 1e0e9d5ecc4a826887de1abc773d86b3
+  md5: 6e687f10502d7d9d369c384e99977953
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-imcdatasets", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, markdown, testthat
 requirements:
   host:
-    - 'bioconductor-cytomapper >=1.12.0,<1.13.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
+    - 'bioconductor-cytomapper >=1.14.0,<1.15.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
     - r-base
   run:
-    - 'bioconductor-cytomapper >=1.12.0,<1.13.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
+    - 'bioconductor-cytomapper >=1.14.0,<1.15.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-imcdatasets/post-link.sh b/recipes/bioconductor-imcdatasets/post-link.sh
index f353b2a1ae091..12db5126d417b 100644
--- a/recipes/bioconductor-imcdatasets/post-link.sh
+++ b/recipes/bioconductor-imcdatasets/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "imcdatasets-1.8.0"
+installBiocDataPackage.sh "imcdatasets-1.10.0"
diff --git a/recipes/bioconductor-imcrtools/meta.yaml b/recipes/bioconductor-imcrtools/meta.yaml
index b56409bd2fdbe..50de270226360 100644
--- a/recipes/bioconductor-imcrtools/meta.yaml
+++ b/recipes/bioconductor-imcrtools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.3" %}
+{% set version = "1.8.0" %}
 {% set name = "imcRtools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 94eb20c85197b1461d9d5ab126b31c9d
+  md5: 483b782cf0adc433cf956e4ca52c393c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-imcrtools", max_pin="x.x") }}'
   noarch: generic
 # Suggests: CATALYST, grid, BiocStyle, knitr, rmarkdown, markdown, testthat
 requirements:
   host:
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-cytomapper >=1.12.0,<1.13.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-cytomapper >=1.14.0,<1.15.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-abind
     - r-base
     - r-concaveman
@@ -52,16 +53,16 @@ requirements:
     - r-viridis
     - r-vroom
   run:
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-cytomapper >=1.12.0,<1.13.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-cytomapper >=1.14.0,<1.15.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-abind
     - r-base
     - r-concaveman
diff --git a/recipes/bioconductor-imman/meta.yaml b/recipes/bioconductor-imman/meta.yaml
index a70a804e1068e..4a0b5412457fe 100644
--- a/recipes/bioconductor-imman/meta.yaml
+++ b/recipes/bioconductor-imman/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "IMMAN" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3588d8794020fb9d369910d822b5b1e4
+  md5: 6e3ac40584a93ea233ba0b082a4d79aa
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-imman", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-stringdb >=2.12.0,<2.13.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-stringdb >=2.14.0,<2.15.0'
     - r-base
     - r-igraph
     - r-seqinr
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-stringdb >=2.12.0,<2.13.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-stringdb >=2.14.0,<2.15.0'
     - r-base
     - r-igraph
     - r-seqinr
diff --git a/recipes/bioconductor-immunespacer/meta.yaml b/recipes/bioconductor-immunespacer/meta.yaml
index e195e9f0a49c0..20db0e898252b 100644
--- a/recipes/bioconductor-immunespacer/meta.yaml
+++ b/recipes/bioconductor-immunespacer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "ImmuneSpaceR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a7365d830f8a7ec436b6737932cb6c1b
+  md5: 3d19d0b03625db9bd86ce96b98dbe438
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-immunespacer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, covr, withr
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowworkspace >=4.12.0,<4.13.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowworkspace >=4.14.0,<4.15.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-curl
     - r-data.table
@@ -41,10 +42,10 @@ requirements:
     - r-rmarkdown
     - r-scales
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowworkspace >=4.12.0,<4.13.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowworkspace >=4.14.0,<4.15.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-curl
     - r-data.table
diff --git a/recipes/bioconductor-immunoclust/meta.yaml b/recipes/bioconductor-immunoclust/meta.yaml
index de5de744faf41..32861095ef561 100644
--- a/recipes/bioconductor-immunoclust/meta.yaml
+++ b/recipes/bioconductor-immunoclust/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "immunoClust" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c5d377e5265f45ceb2a4da80d355fc47
+  md5: b83f47eaa19d45984b19f4071b455873
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-immunoclust", max_pin="x.x") }}'
 # Suggests: BiocStyle, utils, testthat
+# SystemRequirements: gsl
 requirements:
   host:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-lattice
     - libblas
     - liblapack
+    - gsl
   run:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-lattice
+    - gsl
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
diff --git a/recipes/bioconductor-immunotation/meta.yaml b/recipes/bioconductor-immunotation/meta.yaml
index 232bdbeb588c2..eb969b28a159d 100644
--- a/recipes/bioconductor-immunotation/meta.yaml
+++ b/recipes/bioconductor-immunotation/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "immunotation" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 4dff1d35e677b860b005364788695243
+  md5: b05bb33e3987de27d181d8e44e468f62
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-immunotation", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, rmarkdown, BiocStyle, knitr, testthat, DT
 requirements:
diff --git a/recipes/bioconductor-impcdata/meta.yaml b/recipes/bioconductor-impcdata/meta.yaml
index f99c7b47fac93..6d8b9e6c09f7b 100644
--- a/recipes/bioconductor-impcdata/meta.yaml
+++ b/recipes/bioconductor-impcdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "IMPCdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a3db8a9ef20ab4890eb5dede2f53fc44
+  md5: c4a243d4a15f680abfb5d61a951c620d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-impcdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-impute/meta.yaml b/recipes/bioconductor-impute/meta.yaml
index ffa18e5707df0..95703fe1a101b 100644
--- a/recipes/bioconductor-impute/meta.yaml
+++ b/recipes/bioconductor-impute/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.74.1" %}
+{% set version = "1.76.0" %}
 {% set name = "impute" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: cf3ffdc0f5d6caac43d3e3e7d73a8096
+  md5: 8e974dcc31c3507ebcc8984b2d7943f9
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-impute", max_pin="x.x") }}'
 requirements:
   host:
     - r-base
@@ -38,6 +39,8 @@ about:
   description: 'Imputation for microarray data (currently KNN only)'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:impute
     - doi:10.1007/978-3-642-57489-4_7
diff --git a/recipes/bioconductor-indac.db/meta.yaml b/recipes/bioconductor-indac.db/meta.yaml
index be1f05bca5b39..280f0ef419b4f 100644
--- a/recipes/bioconductor-indac.db/meta.yaml
+++ b/recipes/bioconductor-indac.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "indac.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: cba72edcf7278033151e0eac077d8ff8
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-indac.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.dm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.dm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.dm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.dm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-indeed/meta.yaml b/recipes/bioconductor-indeed/meta.yaml
index e8089c504c58d..1e3e32686ddea 100644
--- a/recipes/bioconductor-indeed/meta.yaml
+++ b/recipes/bioconductor-indeed/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.14.0" %}
+{% set version = "2.16.0" %}
 {% set name = "INDEED" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7441181a9c207fbd3288dd9b8ee500b7
+  md5: 457badfae1608eb2c198b89526abe740
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-indeed", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr (>= 1.19), rmarkdown (>= 1.8), testthat (>= 2.0.0)
 requirements:
diff --git a/recipes/bioconductor-inetgrate/build.sh b/recipes/bioconductor-inetgrate/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-inetgrate/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-inetgrate/meta.yaml b/recipes/bioconductor-inetgrate/meta.yaml
new file mode 100644
index 0000000000000..2e2f82d637edc
--- /dev/null
+++ b/recipes/bioconductor-inetgrate/meta.yaml
@@ -0,0 +1,69 @@
+{% set version = "1.0.0" %}
+{% set name = "iNETgrate" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: fb3e503060d4294162e8690a6bb41059
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-inetgrate", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: knitr, org.Hs.eg.db, org.Mm.eg.db, IlluminaHumanMethylation450kanno.ilmn12.hg19, AnnotationDbi, sesameData, TCGAbiolinks (>= 2.29.4)
+requirements:
+  host:
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-pigengene >=1.28.0,<1.29.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-caret
+    - r-glmnet
+    - r-gplots
+    - r-igraph
+    - r-matrixstats
+    - r-rfast
+    - r-survival
+    - r-tidyr
+    - r-tidyselect
+    - r-wgcna
+  run:
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-pigengene >=1.28.0,<1.29.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-caret
+    - r-glmnet
+    - r-gplots
+    - r-igraph
+    - r-matrixstats
+    - r-rfast
+    - r-survival
+    - r-tidyr
+    - r-tidyselect
+    - r-wgcna
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'Integrates DNA methylation data with gene expression in a single gene network'
+  description: 'The iNETgrate package provides functions to build a correlation network in which nodes are genes. DNA methylation and gene expression data are integrated to define the connections between genes. This network is used to identify modules (clusters) of genes. The biological information in each of the resulting modules is represented by an eigengene. These biological signatures can be used as features e.g., for classification of patients into risk categories. The resulting biological signatures are very robust and give a holistic view of the underlying molecular changes.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-infercnv/meta.yaml b/recipes/bioconductor-infercnv/meta.yaml
index 015d148d0fac9..cca8ee52d9314 100644
--- a/recipes/bioconductor-infercnv/meta.yaml
+++ b/recipes/bioconductor-infercnv/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.1" %}
 {% set name = "infercnv" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 9e09bfc20a01a9aebdf76bd5bb15eb0e
+  md5: d5bce5518c27e86b3fb26b6fedad5d7b
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-infercnv", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat
 # SystemRequirements: JAGS 4.x.y
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'r-htmltools >=0.5.7'
     - r-ape
     - r-argparse
     - r-base
@@ -56,10 +58,11 @@ requirements:
     - r-tidyr
     - 'jags 4.*.*'
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'r-htmltools >=0.5.7'
     - r-ape
     - r-argparse
     - r-base
diff --git a/recipes/bioconductor-infinityflow/meta.yaml b/recipes/bioconductor-infinityflow/meta.yaml
index d4b597682299b..f1047378cf0e6 100644
--- a/recipes/bioconductor-infinityflow/meta.yaml
+++ b/recipes/bioconductor-infinityflow/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "infinityFlow" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 54c32c8b8be6ae8dd92483ea3fe25f2b
+  md5: e65e5163632d9351a8a1f1bb30d74d8f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-infinityflow", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, keras, tensorflow, glmnetUtils, e1071
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-generics
     - r-gtools
@@ -33,8 +34,8 @@ requirements:
     - r-uwot
     - r-xgboost
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-generics
     - r-gtools
diff --git a/recipes/bioconductor-inpas/meta.yaml b/recipes/bioconductor-inpas/meta.yaml
index 0c6fd56ba7c4d..9d51c47ac6612 100644
--- a/recipes/bioconductor-inpas/meta.yaml
+++ b/recipes/bioconductor-inpas/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.8.0" %}
+{% set version = "2.10.0" %}
 {% set name = "InPAS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d43e5034da4ada85c372c1f7f415a95a
+  md5: d11dbf3351e3fec486c3da1a61bf6050
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-inpas", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics,BiocManager, BiocStyle, BSgenome.Mmusculus.UCSC.mm10, BSgenome.Hsapiens.UCSC.hg19, EnsDb.Hsapiens.v86, EnsDb.Mmusculus.v79, knitr, markdown, rmarkdown, rtracklayer, RUnit, grDevices, TxDb.Hsapiens.UCSC.hg19.knownGene,TxDb.Mmusculus.UCSC.mm10.knownGene
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-cleanupdtseq >=1.38.0,<1.39.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-plyranges >=1.20.0,<1.21.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-cleanupdtseq >=1.40.0,<1.41.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-batchtools
     - r-depmixs4
@@ -48,19 +49,19 @@ requirements:
     - r-reshape2
     - r-rsqlite
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-cleanupdtseq >=1.38.0,<1.39.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-plyranges >=1.20.0,<1.21.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-cleanupdtseq >=1.40.0,<1.41.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-batchtools
     - r-depmixs4
diff --git a/recipes/bioconductor-inpower/meta.yaml b/recipes/bioconductor-inpower/meta.yaml
index 991b764e5def3..352b849653f39 100644
--- a/recipes/bioconductor-inpower/meta.yaml
+++ b/recipes/bioconductor-inpower/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "INPower" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: af7a75d26eefaadd42eb6b31e5d4aae0
+  md5: 3b769c08ded506c713da036c30fe4da9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-inpower", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics
 requirements:
diff --git a/recipes/bioconductor-inspect/build_failure.linux-64.yaml b/recipes/bioconductor-inspect/build_failure.linux-64.yaml
new file mode 100644
index 0000000000000..95ece71c08362
--- /dev/null
+++ b/recipes/bioconductor-inspect/build_failure.linux-64.yaml
@@ -0,0 +1,33 @@
+recipe_sha: b6bbddaaff8dbbb23dad96d68412111023807b708179b0d3fa28588e58a8759a  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+reason: |-
+  Error: object ‘read.xls’ is not exported by 'namespace:gdata'
+category: |-
+  compiler error
+log: |-
+  14:32:11 BIOCONDA INFO (OUT) ERROR: lazy loading failed for package ‘INSPEcT’
+  14:32:11 BIOCONDA INFO (OUT) During startup - Warning message:
+  14:32:11 BIOCONDA INFO (OUT) Setting LC_TIME failed, using "C"
+  14:32:11 BIOCONDA INFO (OUT) Error: object ‘read.xls’ is not exported by 'namespace:gdata'
+  14:32:11 BIOCONDA INFO (OUT) Execution halted
+  14:32:11 BIOCONDA INFO (OUT) * removing ‘/opt/conda/conda-bld/bioconductor-inspect_1702304851717/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/R/library/INSPEcT’
+  14:32:12 BIOCONDA INFO (OUT) Traceback (most recent call last):
+  14:32:12 BIOCONDA INFO (OUT)   File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
+  14:32:12 BIOCONDA INFO (OUT)     sys.exit(main())
+  14:32:12 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
+  14:32:12 BIOCONDA INFO (OUT)     call_conda_build(action, config)
+  14:32:12 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
+  14:32:12 BIOCONDA INFO (OUT)     result = api.build(
+  14:32:12 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
+  14:32:12 BIOCONDA INFO (OUT)     return build_tree(
+  14:32:12 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
+  14:32:12 BIOCONDA INFO (OUT)     packages_from_this = build(metadata, stats,
+  14:32:12 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
+  14:32:12 BIOCONDA INFO (OUT)     utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
+  14:32:12 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
+  14:32:12 BIOCONDA INFO (OUT)     return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
+  14:32:12 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
+  14:32:12 BIOCONDA INFO (OUT)     raise subprocess.CalledProcessError(proc.returncode, _args)
+  14:32:12 BIOCONDA INFO (OUT) subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/bioconductor-inspect_1702304851717/work/conda_build.sh']' returned non-zero exit status 1.
+  14:32:21 BIOCONDA ERROR COMMAND FAILED (exited with 1): docker run -t --net host --rm -v /tmp/tmp24i5m63r/build_script.bash:/opt/build_script.bash -v /opt/mambaforge/envs/bioconda/conda-bld/:/opt/host-conda-bld -v /home/runner/work/bioconda-recipes/bioconda-recipes/recipes/bioconductor-inspect:/opt/recipe -e LANG=C.UTF-8 -e HOST_USER_ID=1001 quay.io/bioconda/bioconda-utils-build-env-cos7:2.11.0 /bin/bash /opt/build_script.bash
+
diff --git a/recipes/bioconductor-inspect/meta.yaml b/recipes/bioconductor-inspect/meta.yaml
index c1d37877c12d5..8036e06f7ea1b 100644
--- a/recipes/bioconductor-inspect/meta.yaml
+++ b/recipes/bioconductor-inspect/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.31.0" %}
 {% set name = "INSPEcT" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 731b56f9ee71c545653a62ba8bada39c
+  md5: e48ba19e529a7072f52817ecd08d2b9c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-inspect", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-plgem >=1.72.0,<1.73.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-plgem >=1.74.0,<1.75.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'bioconductor-txdb.mmusculus.ucsc.mm9.knowngene >=3.2.0,<3.3.0'
     - r-base
     - r-desolve
@@ -44,20 +45,20 @@ requirements:
     - r-rootsolve
     - r-shiny
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-plgem >=1.72.0,<1.73.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-plgem >=1.74.0,<1.75.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'bioconductor-txdb.mmusculus.ucsc.mm9.knowngene >=3.2.0,<3.3.0'
     - r-base
     - r-desolve
diff --git a/recipes/bioconductor-intact/meta.yaml b/recipes/bioconductor-intact/meta.yaml
index 60af61e8dc338..a273c8c9b8cd1 100644
--- a/recipes/bioconductor-intact/meta.yaml
+++ b/recipes/bioconductor-intact/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.1" %}
+{% set version = "1.2.0" %}
 {% set name = "INTACT" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9ceaf5b083b46ba3d8dd3948502fef80
+  md5: d8646f4acb0cbb31ccf53a672818be40
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-intact", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat
 requirements:
diff --git a/recipes/bioconductor-intad/meta.yaml b/recipes/bioconductor-intad/meta.yaml
index d8c2c7e930a40..754ba4a2adcb7 100644
--- a/recipes/bioconductor-intad/meta.yaml
+++ b/recipes/bioconductor-intad/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "InTAD" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,39 +11,40 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 21d458b9b5a25c878f821311e1fd1cdf
+  md5: 2502f954bc06e364560216eb972c18f7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-intad", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-ggpubr
     - r-mclust
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-ggpubr
diff --git a/recipes/bioconductor-intansv/meta.yaml b/recipes/bioconductor-intansv/meta.yaml
index e37045506cf7c..7b67061f38d88 100644
--- a/recipes/bioconductor-intansv/meta.yaml
+++ b/recipes/bioconductor-intansv/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "intansv" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 5af1bb5f5651006c1f7eaa0e439d4bcf
+  md5: d23f9f69f23ab113ea9ac7100cafb3f1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-intansv", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-plyr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-plyr
 test:
diff --git a/recipes/bioconductor-interaccircos/meta.yaml b/recipes/bioconductor-interaccircos/meta.yaml
index 0889e8f21d8f0..df5cf27ff94e8 100644
--- a/recipes/bioconductor-interaccircos/meta.yaml
+++ b/recipes/bioconductor-interaccircos/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "interacCircos" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ec5b4dc1bd80300f335376278c1b37fc
+  md5: d97429da8da823bf80547b4ac8ca2505
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-interaccircos", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
diff --git a/recipes/bioconductor-interactionset/meta.yaml b/recipes/bioconductor-interactionset/meta.yaml
index 4177427dc658b..b29bd02b58e82 100644
--- a/recipes/bioconductor-interactionset/meta.yaml
+++ b/recipes/bioconductor-interactionset/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.1" %}
+{% set version = "1.30.0" %}
 {% set name = "InteractionSet" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8a37d06db719d31ff11c614171d612d0
+  md5: 273175864f47083ba4b983c72ba0c1dc
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-interactionset", max_pin="x.x") }}'
 # Suggests: testthat, knitr, rmarkdown, BiocStyle
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - r-rcpp
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - r-rcpp
@@ -51,11 +52,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-3
+  license: GPL-3.0-only
   summary: 'Base Classes for Storing Genomic Interaction Data'
   description: 'Provides the GInteractions, InteractionSet and ContactMatrix objects and associated methods for storing and manipulating genomic interaction data from Hi-C and ChIA-PET experiments.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:interactionset
   parent_recipe:
diff --git a/recipes/bioconductor-interactivecomplexheatmap/meta.yaml b/recipes/bioconductor-interactivecomplexheatmap/meta.yaml
index 8453899d820fb..1fc9f6c2b98ff 100644
--- a/recipes/bioconductor-interactivecomplexheatmap/meta.yaml
+++ b/recipes/bioconductor-interactivecomplexheatmap/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "InteractiveComplexHeatmap" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d0c5ce2f87cb18bd8dd6523db4abc358
+  md5: 87fef3e4c9035cbfab5dc4a2242223dc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-interactivecomplexheatmap", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, EnrichedHeatmap, GenomicRanges, data.table, circlize, GenomicFeatures, tidyverse, tidyHeatmap, cluster, org.Hs.eg.db, simplifyEnrichment, GO.db, SC3, GOexpress, SingleCellExperiment, scater, gplots, pheatmap, airway, DESeq2, DT, cola, BiocManager, gridtext, HilbertCurve (>= 1.21.1), shinydashboard, SummarizedExperiment, pkgndep, ks
 requirements:
   host:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-clisymbols
     - r-digest
@@ -36,9 +37,9 @@ requirements:
     - r-shiny
     - r-svglite
   run:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-clisymbols
     - r-digest
diff --git a/recipes/bioconductor-interactivedisplay/build_failure.linux-64.yaml b/recipes/bioconductor-interactivedisplay/build_failure.linux-64.yaml
new file mode 100644
index 0000000000000..9eba9918043d4
--- /dev/null
+++ b/recipes/bioconductor-interactivedisplay/build_failure.linux-64.yaml
@@ -0,0 +1,104 @@
+recipe_sha: 9c517fc772ed28be827019592f5023b076b81fbe7358c247a963d5f1d48acc90  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+log: |2-
+      sysroot_linux-64:                    2.12-he073ed8_16           conda-forge
+      tk:                                  8.6.13-noxft_h4845f30_101  conda-forge
+      tktable:                             2.10-h0c5db8f_5            conda-forge
+      toml:                                0.10.2-pyhd8ed1ab_0        conda-forge
+      tomlkit:                             0.12.3-pyha770c72_0        conda-forge
+      tzdata:                              2023c-h71feb2d_0           conda-forge
+      wheel:                               0.42.0-pyhd8ed1ab_0        conda-forge
+      xmltodict:                           0.13.0-pyhd8ed1ab_0        conda-forge
+      xorg-kbproto:                        1.0.7-h7f98852_1002        conda-forge
+      xorg-libice:                         1.1.1-hd590300_0           conda-forge
+      xorg-libsm:                          1.2.4-h7391055_0           conda-forge
+      xorg-libx11:                         1.8.7-h8ee46fc_0           conda-forge
+      xorg-libxau:                         1.0.11-hd590300_0          conda-forge
+      xorg-libxdmcp:                       1.1.3-h7f98852_0           conda-forge
+      xorg-libxext:                        1.3.4-h0b41bf4_2           conda-forge
+      xorg-libxrender:                     0.9.11-hd590300_0          conda-forge
+      xorg-libxt:                          1.3.0-hd590300_1           conda-forge
+      xorg-renderproto:                    0.11.1-h7f98852_1002       conda-forge
+      xorg-xextproto:                      7.3.0-h0b41bf4_1003        conda-forge
+      xorg-xproto:                         7.0.31-h7f98852_1007       conda-forge
+      xz:                                  5.2.6-h166bdaf_0           conda-forge
+      yaml:                                0.2.5-h7f98852_2           conda-forge
+      yq:                                  3.2.3-pyhd8ed1ab_0         conda-forge
+      zlib:                                1.2.13-hd590300_5          conda-forge
+      zstd:                                1.5.5-hfc55251_0           conda-forge
+
+  Preparing transaction: ...working... done
+  Verifying transaction: ...working... done
+  Executing transaction: ...working...
+  To install TinyTeX with tinytex::install_tinytex() the system must have a functional Perl
+  installation with a File::Find module. Most end-user systems will already satisfy this
+  requirement; however, some minimal contexts (e.g., containers) may not. Perl is available
+  via Conda Forge as the package perl. See https://github.com/rstudio/tinytex/issues/419
+
+
+  done
+  [34mReloading output folder: [0m[34m/opt/conda/[0m[34mconda-bld[0m
+  [?25l[2K[0G[] 0.0s
+  [2K[1A[2K[0Gopt/conda/conda-bld/linux-64                       129.0 B @   2.0MB/s  0.0s
+  opt/conda/conda-bld/noarch                         127.0 B @   2.5MB/s  0.0s
+  [?25h[34mReloading output folder: [0m[34m/opt/conda/[0m[34mconda-bld[0m
+  [?25l[2K[0G[] 0.0s
+  [2K[1A[2K[0Gopt/conda/conda-bld/linux-64                       129.0 B @   2.0MB/s  0.0s
+  opt/conda/conda-bld/noarch                         127.0 B @   2.5MB/s  0.0s
+  [?25h
+  ## Package Plan ##
+
+    environment location: /opt/conda/conda-bld/bioconductor-interactivedisplay_1703228514768/_build_env
+
+
+  Source cache directory is: /opt/conda/conda-bld/src_cache
+  INFO:conda_build.source:Source cache directory is: /opt/conda/conda-bld/src_cache
+  Downloading source to cache: interactiveDisplay_1.40.0_4adec73e76.tar.gz
+  INFO:conda_build.source:Downloading source to cache: interactiveDisplay_1.40.0_4adec73e76.tar.gz
+  Downloading https://bioconductor.org/packages/3.18/bioc/src/contrib/interactiveDisplay_1.40.0.tar.gz
+  INFO:conda_build.source:Downloading https://bioconductor.org/packages/3.18/bioc/src/contrib/interactiveDisplay_1.40.0.tar.gz
+  Success
+  INFO:conda_build.source:Success
+  Extracting download
+  source tree in: /opt/conda/conda-bld/bioconductor-interactivedisplay_1703228514768/work
+  export PREFIX=/opt/conda/conda-bld/bioconductor-interactivedisplay_1703228514768/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p
+  export BUILD_PREFIX=/opt/conda/conda-bld/bioconductor-interactivedisplay_1703228514768/_build_env
+  export SRC_DIR=/opt/conda/conda-bld/bioconductor-interactivedisplay_1703228514768/work
+  During startup - Warning message:
+  Setting LC_TIME failed, using "C"
+  * installing to library /opt/conda/conda-bld/bioconductor-interactivedisplay_1703228514768/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/R/library
+  * installing *source* package interactiveDisplay ...
+  ** using staged installation
+  ** R
+  ** data
+  ** inst
+  ** byte-compile and prepare package for lazy loading
+  During startup - Warning message:
+  Setting LC_TIME failed, using "C"
+  Installing package into $PREFIX/lib/R/library/00LOCK-work/00new
+  (as lib is unspecified)
+  Error in contrib.url(repos, type) :
+    trying to use CRAN without setting a mirror
+  Error: unable to load R code in package interactiveDisplay
+  Execution halted
+  ERROR: lazy loading failed for package interactiveDisplay
+  * removing /opt/conda/conda-bld/bioconductor-interactivedisplay_1703228514768/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/R/library/interactiveDisplay
+  Traceback (most recent call last):
+    File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
+      sys.exit(main())
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
+      call_conda_build(action, config)
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
+      result = api.build(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
+      return build_tree(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
+      packages_from_this = build(metadata, stats,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
+      utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
+      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
+      raise subprocess.CalledProcessError(proc.returncode, _args)
+  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/bioconductor-interactivedisplay_1703228514768/work/conda_build.sh']' returned non-zero exit status 1.
+# Last 100 lines of the build log.
diff --git a/recipes/bioconductor-interactivedisplay/meta.yaml b/recipes/bioconductor-interactivedisplay/meta.yaml
index bf5cbb9038509..d76299068acbc 100644
--- a/recipes/bioconductor-interactivedisplay/meta.yaml
+++ b/recipes/bioconductor-interactivedisplay/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "interactiveDisplay" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 32075538ec509a9743bb5e6baf5b0655
+  md5: 4adec73e763df3dc2e697e41bff3ead8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-interactivedisplay", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, hgu95av2.db, knitr, GenomicRanges, SummarizedExperiment, GOstats, ggbio, GO.db, Gviz, rtracklayer, metagenomeSeq, gplots, vegan, Biobase
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-category >=2.66.0,<2.67.0'
-    - 'bioconductor-interactivedisplaybase >=1.38.0,<1.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-category >=2.68.0,<2.69.0'
+    - 'bioconductor-interactivedisplaybase >=1.40.0,<1.41.0'
     - r-base
     - r-ggplot2
     - r-gridsvg
@@ -33,12 +34,11 @@ requirements:
     - r-reshape2
     - r-shiny
     - r-xml
-    - r-biocmanager
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-category >=2.66.0,<2.67.0'
-    - 'bioconductor-interactivedisplaybase >=1.38.0,<1.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-category >=2.68.0,<2.69.0'
+    - 'bioconductor-interactivedisplaybase >=1.40.0,<1.41.0'
     - r-base
     - r-ggplot2
     - r-gridsvg
@@ -47,10 +47,8 @@ requirements:
     - r-reshape2
     - r-shiny
     - r-xml
-    - r-biocmanager
 test:
   commands:
-    - ls $PREFIX/bin
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
diff --git a/recipes/bioconductor-interactivedisplaybase/meta.yaml b/recipes/bioconductor-interactivedisplaybase/meta.yaml
index 7e4aac617b04d..6457aaceb53ef 100644
--- a/recipes/bioconductor-interactivedisplaybase/meta.yaml
+++ b/recipes/bioconductor-interactivedisplaybase/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "interactiveDisplayBase" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b348c5193f2b96439ef86cb82c03247f
+  md5: 9ae8be7104ab2debe258b504bcd24e38
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-interactivedisplaybase", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, markdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-dt
     - r-shiny
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-dt
     - r-shiny
diff --git a/recipes/bioconductor-intercellar/meta.yaml b/recipes/bioconductor-intercellar/meta.yaml
index 950572f1a13c1..81dde8f9efb34 100644
--- a/recipes/bioconductor-intercellar/meta.yaml
+++ b/recipes/bioconductor-intercellar/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.6.0" %}
+{% set version = "2.8.0" %}
 {% set name = "InterCellar" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: aebf615461677efa93c2c73cbcdfa318
+  md5: a331a8a5f0161dd1e5afa2430660b785
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-intercellar", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 3.0.0), knitr, rmarkdown, glue, graphite, processx, attempt, BiocStyle, httr
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
     - r-base
     - r-circlize
     - r-colorspace
@@ -58,8 +59,8 @@ requirements:
     - r-visnetwork
     - r-wordcloud2
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
     - r-base
     - r-circlize
     - r-colorspace
diff --git a/recipes/bioconductor-interest/meta.yaml b/recipes/bioconductor-interest/meta.yaml
index 66e3569a8415b..80b57c6986664 100644
--- a/recipes/bioconductor-interest/meta.yaml
+++ b/recipes/bioconductor-interest/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "IntEREst" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,51 +11,52 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a96a9adbc5e4a9299cdbeed5f7061ced
+  md5: b9b473ea53b89a32487163ef6a664905
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-interest", max_pin="x.x") }}'
   noarch: generic
 # Suggests: clinfun, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-dexseq >=1.46.0,<1.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicfiles >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-seqlogo >=1.66.0,<1.67.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-dexseq >=1.48.0,<1.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicfiles >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-seqlogo >=1.68.0,<1.69.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dbi
     - r-rmysql
     - r-seqinr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-dexseq >=1.46.0,<1.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicfiles >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-seqlogo >=1.66.0,<1.67.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-dexseq >=1.48.0,<1.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicfiles >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-seqlogo >=1.68.0,<1.69.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dbi
     - r-rmysql
diff --git a/recipes/bioconductor-interminer/meta.yaml b/recipes/bioconductor-interminer/meta.yaml
index 2269b69153c9a..bd1ae0276f056 100644
--- a/recipes/bioconductor-interminer/meta.yaml
+++ b/recipes/bioconductor-interminer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "InterMineR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 09d5528d9f3bdfcfddfa5a54ebf99f98
+  md5: a401e91084a8393592ceb3305b6cbfa2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-interminer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, Gviz, knitr, rmarkdown, GO.db, org.Hs.eg.db
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-httr
     - r-igraph
@@ -35,11 +36,11 @@ requirements:
     - r-xml
     - r-xml2
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-httr
     - r-igraph
diff --git a/recipes/bioconductor-intomics/meta.yaml b/recipes/bioconductor-intomics/meta.yaml
index 599f5b5e98d63..7eb05b0cf719f 100644
--- a/recipes/bioconductor-intomics/meta.yaml
+++ b/recipes/bioconductor-intomics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "IntOMICS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: eec7530ce0fd9941c0cfe06c864e7511
+  md5: 61628ea37535123f71455b77b194b08c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-intomics", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, curatedTCGAData, TCGAutils, testthat
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bestnormalize
     - r-bnlearn
@@ -36,7 +37,7 @@ requirements:
     - r-rcolorbrewer
     - r-rlang
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bestnormalize
     - r-bnlearn
diff --git a/recipes/bioconductor-intramirexplorer/meta.yaml b/recipes/bioconductor-intramirexplorer/meta.yaml
index dc6432a215aac..8e70e8e286ee9 100644
--- a/recipes/bioconductor-intramirexplorer/meta.yaml
+++ b/recipes/bioconductor-intramirexplorer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "IntramiRExploreR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9f037f313236ed7acb47a038d70b7593
+  md5: e319d73695e5e1f12d9fc79896c49674
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-intramirexplorer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: gProfileR, topGO, org.Dm.eg.db, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-fgnet >=3.34.0,<3.35.0'
+    - 'bioconductor-fgnet >=3.36.0,<3.37.0'
     - r-base
     - 'r-igraph >=1.0.1'
     - 'r-knitr >=1.12.3'
   run:
-    - 'bioconductor-fgnet >=3.34.0,<3.35.0'
+    - 'bioconductor-fgnet >=3.36.0,<3.37.0'
     - r-base
     - 'r-igraph >=1.0.1'
     - 'r-knitr >=1.12.3'
diff --git a/recipes/bioconductor-ioniser/meta.yaml b/recipes/bioconductor-ioniser/meta.yaml
index 400b9e5ff444b..d6dce6d5af852 100644
--- a/recipes/bioconductor-ioniser/meta.yaml
+++ b/recipes/bioconductor-ioniser/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.24.0" %}
+{% set version = "2.26.0" %}
 {% set name = "IONiseR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1247c90a347c1886045bdca153fe5196
+  md5: 10a3ed3f75ba8be8989b90d197096b40
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ioniser", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, gridExtra, testthat, minionSummaryData
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-bit64
     - r-dplyr
@@ -36,12 +37,12 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-bit64
     - r-dplyr
diff --git a/recipes/bioconductor-ipac/meta.yaml b/recipes/bioconductor-ipac/meta.yaml
index 51dc95556d71c..c8ac07446c2ae 100644
--- a/recipes/bioconductor-ipac/meta.yaml
+++ b/recipes/bioconductor-ipac/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.44.0" %}
+{% set version = "1.46.0" %}
 {% set name = "iPAC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f48c2f8e363a774893839a48379a8d87
+  md5: 2ea1fca8a80c62d82be0ef8d6313e52b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ipac", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
     - r-gdata
     - r-scatterplot3d
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
     - r-gdata
     - r-scatterplot3d
diff --git a/recipes/bioconductor-ipath/meta.yaml b/recipes/bioconductor-ipath/meta.yaml
index 6f73e3afe26e8..c942c0964afed 100644
--- a/recipes/bioconductor-ipath/meta.yaml
+++ b/recipes/bioconductor-ipath/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.1" %}
+{% set version = "1.8.0" %}
 {% set name = "iPath" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 186f06f5b67f1987457d4b8a8b999d9b
+  md5: 71bdeccc2d0192cd080c4c190831d792
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ipath", max_pin="x.x") }}'
 # Suggests: rmarkdown, BiocStyle, knitr
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-ggplot2
     - r-ggpubr
@@ -34,7 +35,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-ggplot2
     - r-ggpubr
diff --git a/recipes/bioconductor-ipddb/meta.yaml b/recipes/bioconductor-ipddb/meta.yaml
index 90e5b808a3a52..685bfe5c5e978 100644
--- a/recipes/bioconductor-ipddb/meta.yaml
+++ b/recipes/bioconductor-ipddb/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "ipdDb" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0afd5495c9ebce5bb6ad475f9d44236e
+  md5: 0346f5dcca05a1bfb117214c54f36524
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ipddb", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-assertthat
     - r-base
     - r-dbi
     - r-rsqlite
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-assertthat
     - r-base
     - r-dbi
diff --git a/recipes/bioconductor-ipo/meta.yaml b/recipes/bioconductor-ipo/meta.yaml
index b488d197c0948..85a6e762813ff 100644
--- a/recipes/bioconductor-ipo/meta.yaml
+++ b/recipes/bioconductor-ipo/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "IPO" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d99c69c85047b339955ff0a6bc2365d0
+  md5: a1275d6f177754744bcceb9a8aed44a0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ipo", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, msdata, mtbls2, faahKO, knitr
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-camera >=1.56.0,<1.57.0'
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-camera >=1.58.0,<1.59.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-base
     - r-rsm
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-camera >=1.56.0,<1.57.0'
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-camera >=1.58.0,<1.59.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-base
     - r-rsm
 test:
diff --git a/recipes/bioconductor-iranges/meta.yaml b/recipes/bioconductor-iranges/meta.yaml
index 04fb73abd9293..eba4471741a2e 100644
--- a/recipes/bioconductor-iranges/meta.yaml
+++ b/recipes/bioconductor-iranges/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.34.1" %}
+{% set version = "2.36.0" %}
 {% set name = "IRanges" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c9b9645aee1db4455dea509cedd7e157
+  md5: 87618d2e5ee94d7ab81d2e1c4d847120
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-iranges", max_pin="x.x") }}'
 # Suggests: XVector, GenomicRanges, Rsamtools, GenomicAlignments, GenomicFeatures, BSgenome.Celegans.UCSC.ce2, pasillaBamSubset, RUnit, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   build:
     - {{ compiler('c') }}
@@ -41,6 +42,8 @@ about:
   summary: 'Foundation of integer range manipulation in Bioconductor'
   description: 'Provides efficient low-level and highly reusable S4 classes for storing, manipulating and aggregating over annotated ranges of integers. Implements an algebra of range operations, including efficient algorithms for finding overlaps and nearest neighbors. Defines efficient list-like classes for storing, transforming and aggregating large grouped data, i.e., collections of atomic vectors and DataFrames.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:iranges
   parent_recipe:
diff --git a/recipes/bioconductor-isanalytics/meta.yaml b/recipes/bioconductor-isanalytics/meta.yaml
index ae6d0b78dc25b..bb03455bd7935 100644
--- a/recipes/bioconductor-isanalytics/meta.yaml
+++ b/recipes/bioconductor-isanalytics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.1" %}
+{% set version = "1.12.0" %}
 {% set name = "ISAnalytics" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ceb361c936fc5adc1ae9eb2b5122839c
+  md5: d1962980b18dd3ff8fdcc1bb0c855eaf
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-isanalytics", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, covr, knitr, BiocStyle, sessioninfo, rmarkdown, roxygen2, vegan, withr, extraDistr, ggalluvial, scales, gridExtra, R.utils, RefManageR, flexdashboard, circlize, plotly, gtools, eulerr, openxlsx, jsonlite, pheatmap, BiocParallel, progressr, future, doFuture, foreach, psych, data.table, Rcapture
 requirements:
diff --git a/recipes/bioconductor-isee/meta.yaml b/recipes/bioconductor-isee/meta.yaml
index 09bb9622763bd..1cb011c60e377 100644
--- a/recipes/bioconductor-isee/meta.yaml
+++ b/recipes/bioconductor-isee/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.12.0" %}
+{% set version = "2.14.0" %}
 {% set name = "iSEE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a933b7c4b34541ff8e3f477b24c354c2
+  md5: e6d2be3afb9bc484d594cbd21887ec53
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-isee", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, covr, BiocStyle, knitr, rmarkdown, scRNAseq, TENxPBMCData, scater, DelayedArray, HDF5Array, RColorBrewer, viridis, htmltools
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-colourpicker
@@ -43,11 +44,11 @@ requirements:
     - r-vipor
     - r-viridislite
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-colourpicker
diff --git a/recipes/bioconductor-iseede/build.sh b/recipes/bioconductor-iseede/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-iseede/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-iseede/meta.yaml b/recipes/bioconductor-iseede/meta.yaml
new file mode 100644
index 0000000000000..68f2097a44e14
--- /dev/null
+++ b/recipes/bioconductor-iseede/meta.yaml
@@ -0,0 +1,48 @@
+{% set version = "1.0.0" %}
+{% set name = "iSEEde" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 4d6215b9243635ed9dd3b6fcf5cbf166
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-iseede", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: airway, BiocStyle, covr, knitr, limma, org.Hs.eg.db, RefManageR, rmarkdown, scuttle, sessioninfo, statmod, testthat (>= 3.0.0)
+requirements:
+  host:
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-isee >=2.14.0,<2.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-shiny
+  run:
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-isee >=2.14.0,<2.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-shiny
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'iSEE extension for panels related to differential expression analysis'
+  description: 'This package contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels or modes facilitating the analysis of differential expression results. This package does not perform differential expression. Instead, it provides methods to embed precomputed differential expression results in a SummarizedExperiment object, in a manner that is compatible with interactive visualisation in iSEE applications.'
+
diff --git a/recipes/bioconductor-iseehex/meta.yaml b/recipes/bioconductor-iseehex/meta.yaml
index 721af6f3acd45..45547ab3c80ac 100644
--- a/recipes/bioconductor-iseehex/meta.yaml
+++ b/recipes/bioconductor-iseehex/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "iSEEhex" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 49e7fb29541fb2ac12ad0ac21926d277
+  md5: 9bc98dc14114c756f97c130adf061a4b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-iseehex", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, covr, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 3.0.0), scRNAseq, scater
 requirements:
   host:
-    - 'bioconductor-isee >=2.12.0,<2.13.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-isee >=2.14.0,<2.15.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-hexbin
     - r-shiny
   run:
-    - 'bioconductor-isee >=2.12.0,<2.13.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-isee >=2.14.0,<2.15.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-hexbin
diff --git a/recipes/bioconductor-iseehub/meta.yaml b/recipes/bioconductor-iseehub/meta.yaml
index 3cc96f0d3f3f5..0a193959471a0 100644
--- a/recipes/bioconductor-iseehub/meta.yaml
+++ b/recipes/bioconductor-iseehub/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.1.1" %}
+{% set version = "1.4.0" %}
 {% set name = "iSEEhub" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 98bd83d25a30d3029b20350423b76e6e
+  md5: 6ebb32da66242f608b83522fca1d9a62
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-iseehub", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, covr, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 3.0.0), nullrangesData
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-isee >=2.12.0,<2.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-isee >=2.14.0,<2.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-biocmanager
     - r-dt
@@ -35,12 +36,12 @@ requirements:
     - r-shinydashboard
     - r-shinyjs
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-isee >=2.12.0,<2.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-isee >=2.14.0,<2.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-biocmanager
     - r-dt
diff --git a/recipes/bioconductor-iseeindex/build.sh b/recipes/bioconductor-iseeindex/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-iseeindex/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-iseeindex/meta.yaml b/recipes/bioconductor-iseeindex/meta.yaml
new file mode 100644
index 0000000000000..e795471cb94d1
--- /dev/null
+++ b/recipes/bioconductor-iseeindex/meta.yaml
@@ -0,0 +1,60 @@
+{% set version = "1.0.0" %}
+{% set name = "iSEEindex" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 98a9141431a3206fd242b5b0b4056c41
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-iseeindex", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, covr, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 3.0.0), yaml
+requirements:
+  host:
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-isee >=2.14.0,<2.15.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-dt
+    - r-paws.storage
+    - r-rintrojs
+    - r-shiny
+    - r-shinydashboard
+    - r-shinyjs
+    - r-stringr
+    - r-urltools
+  run:
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-isee >=2.14.0,<2.15.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-dt
+    - r-paws.storage
+    - r-rintrojs
+    - r-shiny
+    - r-shinydashboard
+    - r-shinyjs
+    - r-stringr
+    - r-urltools
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'iSEE extension for a landing page to a custom collection of data sets'
+  description: 'This package provides an interface to any collection of data sets within a single iSEE web-application. The main functionality of this package is to define a custom landing page allowing app maintainers to list a custom collection of data sets that users can selected from and directly load objects into an iSEE web-application.'
+
diff --git a/recipes/bioconductor-iseepathways/build.sh b/recipes/bioconductor-iseepathways/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-iseepathways/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-iseepathways/meta.yaml b/recipes/bioconductor-iseepathways/meta.yaml
new file mode 100644
index 0000000000000..b1ecb82d75020
--- /dev/null
+++ b/recipes/bioconductor-iseepathways/meta.yaml
@@ -0,0 +1,48 @@
+{% set version = "1.0.0" %}
+{% set name = "iSEEpathways" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 52b84dcbd5e5ab0a6bbdc27120d7e86a
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-iseepathways", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: airway, BiocStyle, covr, edgeR, fgsea, GO.db, iSEEde, knitr, org.Hs.eg.db, RefManageR, rmarkdown, scater, scuttle, sessioninfo, testthat (>= 3.0.0)
+requirements:
+  host:
+    - 'bioconductor-isee >=2.14.0,<2.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-ggplot2
+    - r-shiny
+    - r-shinywidgets
+  run:
+    - 'bioconductor-isee >=2.14.0,<2.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-ggplot2
+    - r-shiny
+    - r-shinywidgets
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'iSEE extension for panels related to pathway analysis'
+  description: 'This package contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels or modes facilitating the analysis of pathway analysis results. This package does not perform pathway analysis. Instead, it provides methods to embed precomputed pathway analysis results in a SummarizedExperiment object, in a manner that is compatible with interactive visualisation in iSEE applications.'
+
diff --git a/recipes/bioconductor-iseeu/meta.yaml b/recipes/bioconductor-iseeu/meta.yaml
index 5ad45b2cbf5f2..b0845ec64ecd3 100644
--- a/recipes/bioconductor-iseeu/meta.yaml
+++ b/recipes/bioconductor-iseeu/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "iSEEu" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 320331a5b0bf6929e03ba9003d0d8aad
+  md5: d9349d85759c37c8a971b4ffcebcecea
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-iseeu", max_pin="x.x") }}'
   noarch: generic
 # Suggests: scRNAseq, scater, scran, airway, edgeR, AnnotationDbi, org.Hs.eg.db, GO.db, KEGGREST, knitr, igraph, rmarkdown, BiocStyle, htmltools, Rtsne, uwot, testthat (>= 2.1.0), covr
 requirements:
   host:
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-isee >=2.12.0,<2.13.0'
-    - 'bioconductor-iseehex >=1.2.0,<1.3.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-isee >=2.14.0,<2.15.0'
+    - 'bioconductor-iseehex >=1.4.0,<1.5.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-colourpicker
     - r-dt
@@ -34,12 +35,12 @@ requirements:
     - r-shiny
     - r-shinyace
   run:
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-isee >=2.12.0,<2.13.0'
-    - 'bioconductor-iseehex >=1.2.0,<1.3.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-isee >=2.14.0,<2.15.0'
+    - 'bioconductor-iseehex >=1.4.0,<1.5.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-colourpicker
     - r-dt
diff --git a/recipes/bioconductor-iseq/meta.yaml b/recipes/bioconductor-iseq/meta.yaml
index c55d6f5819474..326c46a55f5f7 100644
--- a/recipes/bioconductor-iseq/meta.yaml
+++ b/recipes/bioconductor-iseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.52.0" %}
+{% set version = "1.54.0" %}
 {% set name = "iSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2f68d848b58ee7cc917534a00c27d69c
+  md5: 1798c4c248175516afc66ee7f45d5051
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-iseq", max_pin="x.x") }}'
 requirements:
   host:
     - r-base
diff --git a/recipes/bioconductor-islet/meta.yaml b/recipes/bioconductor-islet/meta.yaml
index 19564678e2d71..78b454e10d2aa 100644
--- a/recipes/bioconductor-islet/meta.yaml
+++ b/recipes/bioconductor-islet/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "ISLET" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6a76f8e90e5662a93b09be8f1f06b863
+  md5: 5cf5ae7df60062c1822ca64c3989a4e0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-islet", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BiocStyle, knitr, rmarkdown, htmltools, RUnit
+# Suggests: BiocStyle, knitr, rmarkdown, htmltools, RUnit, dplyr
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-abind
     - r-base
+    - r-lme4
     - r-matrix
+    - r-nnls
+    - r-purrr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-abind
     - r-base
+    - r-lme4
     - r-matrix
+    - r-nnls
+    - r-purrr
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
@@ -39,6 +48,6 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: GPL-2
   summary: 'Individual-Specific ceLl typE referencing Tool'
-  description: 'ISLET is a method to conduct signal deconvolution for general -omics data. It can estimate the individual-specific and cell-type-specific reference panels, when there are multiple samples observed from each subject. It takes the input of the observed mixture data (feature by sample matrix), and the cell type mixture proportions (sample by cell type matrix), and the sample-to-subject information. It can solve for the reference panel on the individual-basis. It can also conduct test to identify cell-type-specific differential expression (csDE) genes.'
+  description: 'ISLET is a method to conduct signal deconvolution for general -omics data. It can estimate the individual-specific and cell-type-specific reference panels, when there are multiple samples observed from each subject. It takes the input of the observed mixture data (feature by sample matrix), and the cell type mixture proportions (sample by cell type matrix), and the sample-to-subject information. It can solve for the reference panel on the individual-basis and conduct test to identify cell-type-specific differential expression (csDE) genes. It also improves estimated cell type mixture proportions by integrating personalized reference panels.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2'
 
diff --git a/recipes/bioconductor-isobar/meta.yaml b/recipes/bioconductor-isobar/meta.yaml
index dd3209fcd717f..b900b92c86f60 100644
--- a/recipes/bioconductor-isobar/meta.yaml
+++ b/recipes/bioconductor-isobar/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "isobar" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 1795587748211afa4d437207a552d936
+  md5: bf7b66ee10cfc2f8b24f22642bbc395a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-isobar", max_pin="x.x") }}'
   noarch: generic
 # Suggests: MSnbase, OrgMassSpecR, XML, RJSONIO, Hmisc, gplots, RColorBrewer, gridExtra, limma, boot, DBI, MASS
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
     - r-base
     - r-distr
     - r-ggplot2
     - r-plyr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
     - r-base
     - r-distr
     - r-ggplot2
diff --git a/recipes/bioconductor-isobayes/build.sh b/recipes/bioconductor-isobayes/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-isobayes/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-isobayes/meta.yaml b/recipes/bioconductor-isobayes/meta.yaml
new file mode 100644
index 0000000000000..39f49ed83d0d2
--- /dev/null
+++ b/recipes/bioconductor-isobayes/meta.yaml
@@ -0,0 +1,67 @@
+{% set version = "1.0.1" %}
+{% set name = "IsoBayes" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: d9e1de9f5a1f8279117fde4cc997725d
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-isobayes", max_pin="x.x") }}'
+# Suggests: knitr, rmarkdown, testthat, BiocStyle
+# SystemRequirements: C++17
+requirements:
+  host:
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-data.table
+    - r-doparallel
+    - r-dorng
+    - r-foreach
+    - r-ggplot2
+    - r-glue
+    - r-hdinterval
+    - r-iterators
+    - r-rcpp
+    - r-rcpparmadillo
+    - libblas
+    - liblapack
+  run:
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-data.table
+    - r-doparallel
+    - r-dorng
+    - r-foreach
+    - r-ggplot2
+    - r-glue
+    - r-hdinterval
+    - r-iterators
+    - r-rcpp
+    - r-rcpparmadillo
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - make
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'IsoBayes: Single Isoform protein inference Method via Bayesian Analyses'
+  description: 'IsoBayes is a Bayesian method to perform inference on single protein isoforms. Our approach infers the presence/absence of protein isoforms, and also estimates their abundance; additionally, it provides a measure of the uncertainty of these estimates, via: i) the posterior probability that a protein isoform is present in the sample; ii) a posterior credible interval of its abundance. IsoBayes inputs liquid cromatography mass spectrometry (MS) data, and can work with both PSM counts, and intensities. When available, trascript isoform abundances (i.e., TPMs) are also incorporated: TPMs are used to formulate an informative prior for the respective protein isoform relative abundance. We further identify isoforms where the relative abundance of proteins and transcripts significantly differ. We use a two-layer latent variable approach to model two sources of uncertainty typical of MS data: i) peptides may be erroneously detected (even when absent); ii) many peptides are compatible with multiple protein isoforms. In the first layer, we sample the presence/absence of each peptide based on its estimated probability of being mistakenly detected, also known as PEP (i.e., posterior error probability). In the second layer, for peptides that were estimated as being present, we allocate their abundance across the protein isoforms they map to. These two steps allow us to recover the presence and abundance of each protein isoform.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-isocorrector/meta.yaml b/recipes/bioconductor-isocorrector/meta.yaml
index 9bf3067bb9cbd..f21aefe95aded 100644
--- a/recipes/bioconductor-isocorrector/meta.yaml
+++ b/recipes/bioconductor-isocorrector/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "IsoCorrectoR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 90680864d0b6b71e3da4ae275894e35f
+  md5: ba3b19c2ad9ed8f9b7f6929c49828bb5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-isocorrector", max_pin="x.x") }}'
   noarch: generic
 # Suggests: IsoCorrectoRGUI, knitr, rmarkdown, testthat, BiocStyle
 requirements:
diff --git a/recipes/bioconductor-isocorrectorgui/meta.yaml b/recipes/bioconductor-isocorrectorgui/meta.yaml
index cbf371b5fd158..93ca3c9414cfc 100644
--- a/recipes/bioconductor-isocorrectorgui/meta.yaml
+++ b/recipes/bioconductor-isocorrectorgui/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "IsoCorrectoRGUI" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7e197b90dc85263bbc0ef320e2a3b08c
+  md5: 2f46ff7c7647616cced839067b9e1b39
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-isocorrectorgui", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, BiocStyle
 requirements:
   host:
-    - 'bioconductor-isocorrector >=1.18.0,<1.19.0'
+    - 'bioconductor-isocorrector >=1.20.0,<1.21.0'
     - r-base
     - r-readxl
     - r-tcltk2
   run:
-    - 'bioconductor-isocorrector >=1.18.0,<1.19.0'
+    - 'bioconductor-isocorrector >=1.20.0,<1.21.0'
     - r-base
     - r-readxl
     - r-tcltk2
diff --git a/recipes/bioconductor-isoformswitchanalyzer/meta.yaml b/recipes/bioconductor-isoformswitchanalyzer/meta.yaml
index 73d0d270ba44e..83124db0611eb 100644
--- a/recipes/bioconductor-isoformswitchanalyzer/meta.yaml
+++ b/recipes/bioconductor-isoformswitchanalyzer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.0.1" %}
+{% set version = "2.2.0" %}
 {% set name = "IsoformSwitchAnalyzeR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 764485e548e3d6cea542d472e5da6b32
+  md5: 6aad6b0133da9e103b4385ff31b7028c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-isoformswitchanalyzer", max_pin="x.x") }}'
 # Suggests: knitr, BSgenome.Hsapiens.UCSC.hg19, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-dexseq >=1.46.0,<1.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-pfamanalyzer >=1.0.0,<1.1.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-saturn >=1.8.0,<1.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
-    - 'bioconductor-tximeta >=1.18.0,<1.19.0'
-    - 'bioconductor-tximport >=1.28.0,<1.29.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-dexseq >=1.48.0,<1.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-pfamanalyzer >=1.2.0,<1.3.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-saturn >=1.10.0,<1.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
+    - 'bioconductor-tximeta >=1.20.0,<1.21.0'
+    - 'bioconductor-tximport >=1.30.0,<1.31.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-dbi
     - r-dplyr
@@ -59,26 +60,26 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-dexseq >=1.46.0,<1.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-pfamanalyzer >=1.0.0,<1.1.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-saturn >=1.8.0,<1.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
-    - 'bioconductor-tximeta >=1.18.0,<1.19.0'
-    - 'bioconductor-tximport >=1.28.0,<1.29.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-dexseq >=1.48.0,<1.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-pfamanalyzer >=1.2.0,<1.3.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-saturn >=1.10.0,<1.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
+    - 'bioconductor-tximeta >=1.20.0,<1.21.0'
+    - 'bioconductor-tximport >=1.30.0,<1.31.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-dbi
     - r-dplyr
diff --git a/recipes/bioconductor-isolde/meta.yaml b/recipes/bioconductor-isolde/meta.yaml
index 64ca75be07f2e..15cbf7f4756b9 100644
--- a/recipes/bioconductor-isolde/meta.yaml
+++ b/recipes/bioconductor-isolde/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "ISoLDE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,13 +11,14 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: dc7e409a60d1773ea7b12e413f20ef82
+  md5: 448414b250ff7c903395638de3688411
 build:
-  skip: true  # [osx]
-  number: 0
+  skip: True  # [osx]
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-isolde", max_pin="x.x") }}'
 requirements:
   host:
     - r-base
@@ -37,4 +38,6 @@ about:
   summary: 'Integrative Statistics of alleLe Dependent Expression'
   description: 'This package provides ISoLDE a new method for identifying imprinted genes. This method is dedicated to data arising from RNA sequencing technologies. The ISoLDE package implements original statistical methodology described in the publication below.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
-
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/bioconductor-isomirs/meta.yaml b/recipes/bioconductor-isomirs/meta.yaml
index 1dea0e508a153..f101815c26500 100644
--- a/recipes/bioconductor-isomirs/meta.yaml
+++ b/recipes/bioconductor-isomirs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "isomiRs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b48363905238cb50facd569971942f72
+  md5: 95b301f966153c00b98359bb6a0986cd
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-isomirs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, org.Mm.eg.db, targetscan.Hs.eg.db, pheatmap, BiocStyle, testthat
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-degreport >=1.36.0,<1.37.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-degreport >=1.38.0,<1.39.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertive.sets
     - r-base
     - r-broom
@@ -50,16 +51,16 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-degreport >=1.36.0,<1.37.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-degreport >=1.38.0,<1.39.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertive.sets
     - r-base
     - r-broom
diff --git a/recipes/bioconductor-italics/meta.yaml b/recipes/bioconductor-italics/meta.yaml
index c549517d8af3a..a6482e448f84b 100644
--- a/recipes/bioconductor-italics/meta.yaml
+++ b/recipes/bioconductor-italics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.60.0" %}
+{% set version = "2.62.0" %}
 {% set name = "ITALICS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 144200839aef6c79c6f6d7ea1a90d0d0
+  md5: 05a5c23fcec3a45b6ff9b36b66b89752
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-italics", max_pin="x.x") }}'
   noarch: generic
 # Suggests: pd.mapping50k.hind240, pd.mapping250k.sty, pd.mapping250k.nsp
 requirements:
   host:
-    - 'bioconductor-affxparser >=1.72.0,<1.73.0'
-    - 'bioconductor-glad >=2.64.0,<2.65.0'
-    - 'bioconductor-italicsdata >=2.38.0,<2.39.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
+    - 'bioconductor-affxparser >=1.74.0,<1.75.0'
+    - 'bioconductor-glad >=2.66.0,<2.67.0'
+    - 'bioconductor-italicsdata >=2.40.0,<2.41.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
     - 'bioconductor-pd.mapping50k.xba240 >=3.12.0,<3.13.0'
     - r-base
     - r-dbi
   run:
-    - 'bioconductor-affxparser >=1.72.0,<1.73.0'
-    - 'bioconductor-glad >=2.64.0,<2.65.0'
-    - 'bioconductor-italicsdata >=2.38.0,<2.39.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
+    - 'bioconductor-affxparser >=1.74.0,<1.75.0'
+    - 'bioconductor-glad >=2.66.0,<2.67.0'
+    - 'bioconductor-italicsdata >=2.40.0,<2.41.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
     - 'bioconductor-pd.mapping50k.xba240 >=3.12.0,<3.13.0'
     - r-base
     - r-dbi
diff --git a/recipes/bioconductor-italicsdata/meta.yaml b/recipes/bioconductor-italicsdata/meta.yaml
index 4c530d3cbb61a..9a246291d9dd4 100644
--- a/recipes/bioconductor-italicsdata/meta.yaml
+++ b/recipes/bioconductor-italicsdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.38.0" %}
+{% set version = "2.40.0" %}
 {% set name = "ITALICSData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 390829582a6ace43fc47218d8f11e3c0
+  md5: e154526c43e11840acfd4c92ff1cee8f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-italicsdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-italicsdata/post-link.sh b/recipes/bioconductor-italicsdata/post-link.sh
index 3492e076baef6..606e7a5f75eef 100644
--- a/recipes/bioconductor-italicsdata/post-link.sh
+++ b/recipes/bioconductor-italicsdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "italicsdata-2.38.0"
+installBiocDataPackage.sh "italicsdata-2.40.0"
diff --git a/recipes/bioconductor-iterativebma/meta.yaml b/recipes/bioconductor-iterativebma/meta.yaml
index 34e78b6da95c9..60232f6f7d1a5 100644
--- a/recipes/bioconductor-iterativebma/meta.yaml
+++ b/recipes/bioconductor-iterativebma/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.58.0" %}
+{% set version = "1.60.0" %}
 {% set name = "iterativeBMA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4e4143bab9e90dfd557a054ce813f67b
+  md5: be5e8911f1a2493bdf001fbe0a7cecfa
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-iterativebma", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-bma
     - r-leaps
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-bma
     - r-leaps
diff --git a/recipes/bioconductor-iterativebmasurv/meta.yaml b/recipes/bioconductor-iterativebmasurv/meta.yaml
index 3692bf30ef168..3d92067ce1446 100644
--- a/recipes/bioconductor-iterativebmasurv/meta.yaml
+++ b/recipes/bioconductor-iterativebmasurv/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.58.0" %}
+{% set version = "1.60.0" %}
 {% set name = "iterativeBMAsurv" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e7cc92900486c78f40ed28fbc4f5058e
+  md5: d2ced120a3665f0ebb69a462a072ad63
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-iterativebmasurv", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-iterclust/meta.yaml b/recipes/bioconductor-iterclust/meta.yaml
index f4fdf6993584d..e6ec04af4f7eb 100644
--- a/recipes/bioconductor-iterclust/meta.yaml
+++ b/recipes/bioconductor-iterclust/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "iterClust" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f5cad04ff9c73325942d2e3409f70149
+  md5: af72d13d4200d5883ae63a99f0a49a69
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-iterclust", max_pin="x.x") }}'
   noarch: generic
 # Suggests: tsne, bcellViper
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-cluster
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-cluster
 test:
diff --git a/recipes/bioconductor-ivas/meta.yaml b/recipes/bioconductor-ivas/meta.yaml
index 366afca6ebbe3..2759fdf777900 100644
--- a/recipes/bioconductor-ivas/meta.yaml
+++ b/recipes/bioconductor-ivas/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.20.0" %}
+{% set version = "2.22.0" %}
 {% set name = "IVAS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0cf4fb64fd7d23e080c55936659e5259
+  md5: bf3c824233bc6ad5feffc4463554f57f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ivas", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-doparallel
     - r-foreach
@@ -38,15 +39,15 @@ requirements:
     - r-lme4
     - r-matrix
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-doparallel
     - r-foreach
diff --git a/recipes/bioconductor-ivygapse/meta.yaml b/recipes/bioconductor-ivygapse/meta.yaml
index bbdb49d43cfe0..cd26902f032a0 100644
--- a/recipes/bioconductor-ivygapse/meta.yaml
+++ b/recipes/bioconductor-ivygapse/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.1" %}
+{% set version = "1.24.0" %}
 {% set name = "ivygapSE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 21c568e4f1ff5b0da5e6bac07de65eb4
+  md5: d58fa85c46a9447719fa06aa57cc217d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ivygapse", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, png, limma, grid, DT, randomForest, digest, testthat, rmarkdown, BiocStyle, magick, statmod, codetools
 requirements:
   host:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-hwriter
@@ -32,8 +33,8 @@ requirements:
     - r-survminer
     - r-upsetr
   run:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-hwriter
diff --git a/recipes/bioconductor-iwtomics/meta.yaml b/recipes/bioconductor-iwtomics/meta.yaml
index 7a8494052df91..4149664fdced6 100644
--- a/recipes/bioconductor-iwtomics/meta.yaml
+++ b/recipes/bioconductor-iwtomics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "IWTomics" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6226d4962dd65dd0089c609e940bedf7
+  md5: f571644700ff672c2ac90aa49b611158
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-iwtomics", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-fda
     - r-gtable
     - r-kernsmooth
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-fda
     - r-gtable
diff --git a/recipes/bioconductor-iyer517/meta.yaml b/recipes/bioconductor-iyer517/meta.yaml
index 1c593ed51557a..0f3cf9d1d1a9d 100644
--- a/recipes/bioconductor-iyer517/meta.yaml
+++ b/recipes/bioconductor-iyer517/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "Iyer517" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 962d1b3895541924544fd080008a5bc9
+  md5: 81226f1ad5acd16cff4c7371f37d1881
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-iyer517", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-iyer517/post-link.sh b/recipes/bioconductor-iyer517/post-link.sh
index 9103dc3771e2b..6eb9d2b69a88b 100644
--- a/recipes/bioconductor-iyer517/post-link.sh
+++ b/recipes/bioconductor-iyer517/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "iyer517-1.42.0"
+installBiocDataPackage.sh "iyer517-1.44.0"
diff --git a/recipes/bioconductor-jaspar2014/meta.yaml b/recipes/bioconductor-jaspar2014/meta.yaml
index 4fba103ceb0d6..a7de5670f7d7f 100644
--- a/recipes/bioconductor-jaspar2014/meta.yaml
+++ b/recipes/bioconductor-jaspar2014/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "JASPAR2014" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 63249cf2e663d3823da3359b8e584ede
+  md5: 6ef536411db46944f6d5b9a23ee13be6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-jaspar2014", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-jaspar2014/post-link.sh b/recipes/bioconductor-jaspar2014/post-link.sh
index fa7b37c9d1561..0e2548b04d68b 100644
--- a/recipes/bioconductor-jaspar2014/post-link.sh
+++ b/recipes/bioconductor-jaspar2014/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "jaspar2014-1.36.0"
+installBiocDataPackage.sh "jaspar2014-1.38.0"
diff --git a/recipes/bioconductor-jaspar2016/meta.yaml b/recipes/bioconductor-jaspar2016/meta.yaml
index a4fb2145e9b1a..9085e136ba423 100644
--- a/recipes/bioconductor-jaspar2016/meta.yaml
+++ b/recipes/bioconductor-jaspar2016/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "JASPAR2016" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9022c6f9720312b9da10800535edec62
+  md5: 2976e4678291944f664396385049180b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-jaspar2016", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-jaspar2016/post-link.sh b/recipes/bioconductor-jaspar2016/post-link.sh
index 628e268562d10..692043bcfa04f 100644
--- a/recipes/bioconductor-jaspar2016/post-link.sh
+++ b/recipes/bioconductor-jaspar2016/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "jaspar2016-1.28.0"
+installBiocDataPackage.sh "jaspar2016-1.30.0"
diff --git a/recipes/bioconductor-jaspar2018/meta.yaml b/recipes/bioconductor-jaspar2018/meta.yaml
index 4e513a835be7d..d6ddb786027d8 100644
--- a/recipes/bioconductor-jaspar2018/meta.yaml
+++ b/recipes/bioconductor-jaspar2018/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.1.1" %}
 {% set name = "JASPAR2018" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: d91fce6ea0dc9fa6a3be6ebc05c1af5d
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-jaspar2018", max_pin="x.x") }}'
   noarch: generic
 # Suggests: TFBSTools (>= 1.15.6)
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-jaspar2020/meta.yaml b/recipes/bioconductor-jaspar2020/meta.yaml
index a7be771640b73..4fb9b4b049b1e 100644
--- a/recipes/bioconductor-jaspar2020/meta.yaml
+++ b/recipes/bioconductor-jaspar2020/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.10" %}
 {% set name = "JASPAR2020" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: bfcaf41ebf0935b8d146afd37719de2d
 build:
-  number: 6
+  number: 7
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-jaspar2020", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, TFBSTools (>= 1.23.1)
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-jaspar2022/build_failure.linux-64.yaml b/recipes/bioconductor-jaspar2022/build_failure.linux-64.yaml
new file mode 100644
index 0000000000000..12aa18bc75ecd
--- /dev/null
+++ b/recipes/bioconductor-jaspar2022/build_failure.linux-64.yaml
@@ -0,0 +1,43 @@
+recipe_sha: 686f49bcd245205318d59d6a520044055090f8bfdb5ed23f0ddd8ceb5b88b41e  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+reason: |-
+  ValueError: unsupported format character 'T' (0x54) at index 5523
+category: |-
+  compiler error
+log: |-
+  09:04:38 BIOCONDA INFO (OUT) ERROR: loading failed
+  09:04:38 BIOCONDA INFO (OUT) * removing ‘/opt/conda/conda-bld/bioconductor-jaspar2022_1702026057787/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/R/library/JASPAR2022’
+  09:04:38 BIOCONDA INFO (OUT)
+  09:04:38 BIOCONDA INFO (OUT) return code: 1
+  09:04:38 BIOCONDA INFO (OUT)
+  09:04:38 BIOCONDA INFO (OUT) kwargs:
+  09:04:38 BIOCONDA INFO (OUT) {}
+  09:04:38 BIOCONDA INFO (OUT)
+  09:04:38 BIOCONDA INFO (OUT) : <exception str() failed>
+  09:04:38 BIOCONDA INFO (OUT)
+  09:04:38 BIOCONDA INFO (OUT) During handling of the above exception, another exception occurred:
+  09:04:38 BIOCONDA INFO (OUT)
+  09:04:38 BIOCONDA INFO (OUT) Traceback (most recent call last):
+  09:04:38 BIOCONDA INFO (OUT)   File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
+  09:04:38 BIOCONDA INFO (OUT)     sys.exit(main())
+  09:04:38 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
+  09:04:38 BIOCONDA INFO (OUT)     call_conda_build(action, config)
+  09:04:38 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
+  09:04:38 BIOCONDA INFO (OUT)     result = api.build(
+  09:04:38 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
+  09:04:38 BIOCONDA INFO (OUT)     return build_tree(
+  09:04:38 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3089, in build_tree
+  09:04:38 BIOCONDA INFO (OUT)     test(pkg, config=metadata.config.copy(), stats=stats)
+  09:04:38 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2879, in test
+  09:04:38 BIOCONDA INFO (OUT)     environ.create_env(metadata.config.test_prefix, actions, config=metadata.config,
+  09:04:38 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/environ.py", line 1068, in create_env
+  09:04:38 BIOCONDA INFO (OUT)     "too short in" in str(exc)
+  09:04:38 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda/__init__.py", line 104, in __str__
+  09:04:38 BIOCONDA INFO (OUT)     return "\n".join(str(e) for e in self.errors) + "\n"
+  09:04:38 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda/__init__.py", line 104, in <genexpr>
+  09:04:38 BIOCONDA INFO (OUT)     return "\n".join(str(e) for e in self.errors) + "\n"
+  09:04:38 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda/__init__.py", line 58, in __str__
+  09:04:38 BIOCONDA INFO (OUT)     return str(self.message % self._kwargs)
+  09:04:38 BIOCONDA INFO (OUT) ValueError: unsupported format character 'T' (0x54) at index 5523
+  09:04:47 BIOCONDA ERROR COMMAND FAILED (exited with 1): docker run -t --net host --rm -v /tmp/tmptio6n346/build_script.bash:/opt/build_script.bash -v /opt/mambaforge/envs/bioconda/conda-bld/:/opt/host-conda-bld -v /home/runner/work/bioconda-recipes/bioconda-recipes/recipes/bioconductor-jaspar2022:/opt/recipe -e LANG=C.UTF-8 -e HOST_USER_ID=1001 quay.io/bioconda/bioconda-utils-build-env-cos7:2.11.0 /bin/bash /opt/build_script.bash
+
diff --git a/recipes/bioconductor-jaspar2022/meta.yaml b/recipes/bioconductor-jaspar2022/meta.yaml
index a3cb58956eea5..f9be32b043fea 100644
--- a/recipes/bioconductor-jaspar2022/meta.yaml
+++ b/recipes/bioconductor-jaspar2022/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.7" %}
 {% set name = "JASPAR2022" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 282af23228198a377fa9bd76c94dd5eb
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-jaspar2022", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, TFBSTools (>= 1.31.2)
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-jaspar2024/meta.yaml b/recipes/bioconductor-jaspar2024/meta.yaml
new file mode 100644
index 0000000000000..76fe59cb071b2
--- /dev/null
+++ b/recipes/bioconductor-jaspar2024/meta.yaml
@@ -0,0 +1,41 @@
+{% set version = "0.99.6" %}
+{% set name = "JASPAR2024" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 9c8144547873a36473a5f9cad793f578
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-jaspar2024", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: knitr, rmarkdown, BiocStyle, RSQLite
+requirements:
+  host:
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - r-base
+  run:
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - r-base
+    - curl
+    - 'bioconductor-data-packages >=20231203'
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/html/{{ name }}.html'
+  license: GPL-2
+  summary: 'Data package for JASPAR database (version 2024)'
+  description: 'JASPAR (https://testjaspar.uio.no/) is a widely-used open-access database presenting manually curated high-quality and non-redundant DNA-binding profiles for transcription factors (TFs) across taxa. In this 10th release and 20th-anniversary update, the CORE collection has expanded with 329 new profiles. We updated three existing profiles and provided orthogonal support for 72 profiles from the previous release UNVALIDATED collection. Altogether, the JASPAR 2024 update provides a 20 percent increase in CORE profiles from the previous release. A trimming algorithm enhanced profiles by removing low information content flanking base pairs, which were likely uninformative (within the capacity of the PFM models) for TFBS predictions and modelling TF-DNA interactions. This release includes enhanced metadata, featuring a refined classification for plant TFs structural DNA-binding domains. The new JASPAR collections prompt updates to the genomic tracks of predicted TF-binding sites in 8 organisms, with human and mouse tracks available as native tracks in the UCSC Genome browser. All data are available through the JASPAR web interface and programmatically through its API and the updated Bioconductor and pyJASPAR packages. Finally, a new TFBS extraction tool enables users to retrieve predicted JASPAR TFBSs intersecting their genomic regions of interest.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2'
+
diff --git a/recipes/bioconductor-jaspar2024/post-link.sh b/recipes/bioconductor-jaspar2024/post-link.sh
new file mode 100644
index 0000000000000..699e53fdaf711
--- /dev/null
+++ b/recipes/bioconductor-jaspar2024/post-link.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+installBiocDataPackage.sh "jaspar2024-0.99.6"
diff --git a/recipes/bioconductor-jaspar2024/pre-unlink.sh b/recipes/bioconductor-jaspar2024/pre-unlink.sh
new file mode 100644
index 0000000000000..fb38fe4c01a48
--- /dev/null
+++ b/recipes/bioconductor-jaspar2024/pre-unlink.sh
@@ -0,0 +1 @@
+R CMD REMOVE --library=$PREFIX/lib/R/library/ JASPAR2024
diff --git a/recipes/bioconductor-jazaerimetadata.db/meta.yaml b/recipes/bioconductor-jazaerimetadata.db/meta.yaml
index ba4e64d4fc9d4..102a58956d8c4 100644
--- a/recipes/bioconductor-jazaerimetadata.db/meta.yaml
+++ b/recipes/bioconductor-jazaerimetadata.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "JazaeriMetaData.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 3a154a74ac2acebe3471b039c9d9a4dc
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-jazaerimetadata.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-karyoploter/meta.yaml b/recipes/bioconductor-karyoploter/meta.yaml
index 87701bc6b9367..f19c5440e562c 100644
--- a/recipes/bioconductor-karyoploter/meta.yaml
+++ b/recipes/bioconductor-karyoploter/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "karyoploteR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,45 +11,46 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a91ddbf95305d1b2d7537e0648b69597
+  md5: b9fcbfd3b5d7f3349cce595751b31a41
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-karyoploter", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, markdown, testthat, magrittr, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg19.masked, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Mmusculus.UCSC.mm10.knownGene, org.Hs.eg.db, org.Mm.eg.db, pasillaBamSubset
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-bamsignals >=1.32.0,<1.33.0'
-    - 'bioconductor-biovizbase >=1.48.0,<1.49.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-regioner >=1.32.0,<1.33.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-bamsignals >=1.34.0,<1.35.0'
+    - 'bioconductor-biovizbase >=1.50.0,<1.51.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-regioner >=1.34.0,<1.35.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-bezier
     - r-digest
     - r-memoise
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-bamsignals >=1.32.0,<1.33.0'
-    - 'bioconductor-biovizbase >=1.48.0,<1.49.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-regioner >=1.32.0,<1.33.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-bamsignals >=1.34.0,<1.35.0'
+    - 'bioconductor-biovizbase >=1.50.0,<1.51.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-regioner >=1.34.0,<1.35.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-bezier
     - r-digest
diff --git a/recipes/bioconductor-katdetectr/meta.yaml b/recipes/bioconductor-katdetectr/meta.yaml
index cebbe6099fde9..3ee2e89e53520 100644
--- a/recipes/bioconductor-katdetectr/meta.yaml
+++ b/recipes/bioconductor-katdetectr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "katdetectr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: aef9b68945ff582541a046cc4ca01557
+  md5: 7ae9895a26f752a9e8502913ef8ce410
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-katdetectr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: scales (>= 1.2.0), knitr (>= 1.37), rmarkdown (>= 2.13), testthat (>= 3.0.0), BiocStyle (>= 2.26.0)
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg38 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-maftools >=2.16.0,<2.17.0'
-    - 'bioconductor-plyranges >=1.20.0,<1.21.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-maftools >=2.18.0,<2.19.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - 'r-changepoint >=2.2.3'
     - 'r-changepoint.np >=1.0.3'
@@ -45,18 +46,18 @@ requirements:
     - 'r-tibble >=3.1.6'
     - 'r-tidyr >=1.2.0'
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg38 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-maftools >=2.16.0,<2.17.0'
-    - 'bioconductor-plyranges >=1.20.0,<1.21.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-maftools >=2.18.0,<2.19.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - 'r-changepoint >=2.2.3'
     - 'r-changepoint.np >=1.0.3'
diff --git a/recipes/bioconductor-kboost/meta.yaml b/recipes/bioconductor-kboost/meta.yaml
index 01b41adc99a96..8c45d97eb7d3f 100644
--- a/recipes/bioconductor-kboost/meta.yaml
+++ b/recipes/bioconductor-kboost/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "KBoost" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1931b8d58cb833db15f7a321acbf5608
+  md5: 853c93af3367a8af56b60aea8495f44b
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-kboost", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat
 requirements:
diff --git a/recipes/bioconductor-kcsmart/meta.yaml b/recipes/bioconductor-kcsmart/meta.yaml
index 94f10d9fc9b55..e23a15eee3b25 100644
--- a/recipes/bioconductor-kcsmart/meta.yaml
+++ b/recipes/bioconductor-kcsmart/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.58.0" %}
+{% set version = "2.60.0" %}
 {% set name = "KCsmart" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9fa9942f40a2363507b71aefaea90658
+  md5: e50f547d912df8deb29537d5e27fc5d0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-kcsmart", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
-    - 'bioconductor-siggenes >=1.74.0,<1.75.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-siggenes >=1.76.0,<1.77.0'
     - r-base
     - r-kernsmooth
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
-    - 'bioconductor-siggenes >=1.74.0,<1.75.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-siggenes >=1.76.0,<1.77.0'
     - r-base
     - r-kernsmooth
 test:
diff --git a/recipes/bioconductor-kebabs/meta.yaml b/recipes/bioconductor-kebabs/meta.yaml
index ee341cf72deee..5543552572b65 100644
--- a/recipes/bioconductor-kebabs/meta.yaml
+++ b/recipes/bioconductor-kebabs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "kebabs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f175288f436debe8eb7617836263df01
+  md5: d6c4a16d9fd157b1e68acc8d4816017e
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-kebabs", max_pin="x.x") }}'
 # Suggests: SparseM, Biobase, BiocGenerics, knitr
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-apcluster
     - r-base
     - r-e1071
@@ -34,10 +35,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-apcluster
     - r-base
     - r-e1071
@@ -54,11 +55,15 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'GPL (>= 2.1)'
+  license: 'GPL-3.0-or-later'
   summary: 'Kernel-Based Analysis Of Biological Sequences'
   description: 'The package provides functionality for kernel-based analysis of DNA, RNA, and amino acid sequences via SVM-based methods. As core functionality, kebabs implements following sequence kernels: spectrum kernel, mismatch kernel, gappy pair kernel, and motif kernel. Apart from an efficient implementation of standard position-independent functionality, the kernels are extended in a novel way to take the position of patterns into account for the similarity measure. Because of the flexibility of the kernel formulation, other kernels like the weighted degree kernel or the shifted weighted degree kernel with constant weighting of positions are included as special cases. An annotation-specific variant of the kernels uses annotation information placed along the sequence together with the patterns in the sequence. The package allows for the generation of a kernel matrix or an explicit feature representation in dense or sparse format for all available kernels which can be used with methods implemented in other R packages. With focus on SVM-based methods, kebabs provides a framework which simplifies the usage of existing SVM implementations in kernlab, e1071, and LiblineaR. Binary and multi-class classification as well as regression tasks can be used in a unified way without having to deal with the different functions, parameters, and formats of the selected SVM. As support for choosing hyperparameters, the package provides cross validation - including grouped cross validation, grid search and model selection functions. For easier biological interpretation of the results, the package computes feature weights for all SVMs and prediction profiles which show the contribution of individual sequence positions to the prediction result and indicate the relevance of sequence sections for the learning result and the underlying biological functions.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
   parent_recipe:
     name: bioconductor-kebabs
     path: recipes/bioconductor-kebabs
diff --git a/recipes/bioconductor-keggandmetacoredzpathwaysgeo/meta.yaml b/recipes/bioconductor-keggandmetacoredzpathwaysgeo/meta.yaml
index 863b25df9b046..184fb7d2a89ea 100644
--- a/recipes/bioconductor-keggandmetacoredzpathwaysgeo/meta.yaml
+++ b/recipes/bioconductor-keggandmetacoredzpathwaysgeo/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "KEGGandMetacoreDzPathwaysGEO" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7a4483556f83ea2f860efe15052eebe9
+  md5: 3a5180de47f1c28949b77db9f79b44ed
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-keggandmetacoredzpathwaysgeo", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-keggandmetacoredzpathwaysgeo/post-link.sh b/recipes/bioconductor-keggandmetacoredzpathwaysgeo/post-link.sh
index b922daf4b0474..30e63a47b1f7d 100644
--- a/recipes/bioconductor-keggandmetacoredzpathwaysgeo/post-link.sh
+++ b/recipes/bioconductor-keggandmetacoredzpathwaysgeo/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "keggandmetacoredzpathwaysgeo-1.20.0"
+installBiocDataPackage.sh "keggandmetacoredzpathwaysgeo-1.22.0"
diff --git a/recipes/bioconductor-keggdzpathwaysgeo/meta.yaml b/recipes/bioconductor-keggdzpathwaysgeo/meta.yaml
index 17e283c691bfa..1cbbda4787238 100644
--- a/recipes/bioconductor-keggdzpathwaysgeo/meta.yaml
+++ b/recipes/bioconductor-keggdzpathwaysgeo/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "KEGGdzPathwaysGEO" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cfdb271eede41d51e01844f8c7b06b70
+  md5: 2f30f9ac05c04214d25a9d49fb4ce8bd
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-keggdzpathwaysgeo", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-keggdzpathwaysgeo/post-link.sh b/recipes/bioconductor-keggdzpathwaysgeo/post-link.sh
index ea3d52b80514f..872a58fcfdea7 100644
--- a/recipes/bioconductor-keggdzpathwaysgeo/post-link.sh
+++ b/recipes/bioconductor-keggdzpathwaysgeo/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "keggdzpathwaysgeo-1.38.0"
+installBiocDataPackage.sh "keggdzpathwaysgeo-1.40.0"
diff --git a/recipes/bioconductor-kegggraph/meta.yaml b/recipes/bioconductor-kegggraph/meta.yaml
index de4bc9cdf6fd2..d5e9a057135c4 100644
--- a/recipes/bioconductor-kegggraph/meta.yaml
+++ b/recipes/bioconductor-kegggraph/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.60.0" %}
+{% set version = "1.62.0" %}
 {% set name = "KEGGgraph" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5aaf23d2bbd58de35e6d03aa1d61de6b
+  md5: 9a4fb63b5bab3eeb0af51af22fa2dc16
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-kegggraph", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RBGL, testthat, RColorBrewer, org.Hs.eg.db, hgu133plus2.db, SPIA
 requirements:
   host:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-rcurl
     - 'r-xml >=2.3-0'
   run:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-rcurl
     - 'r-xml >=2.3-0'
diff --git a/recipes/bioconductor-kegglincs/meta.yaml b/recipes/bioconductor-kegglincs/meta.yaml
index 3afae5ed786f9..f94dbdc65d52e 100644
--- a/recipes/bioconductor-kegglincs/meta.yaml
+++ b/recipes/bioconductor-kegglincs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "KEGGlincs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3f4e8a9944dc0cf5c69cf22425054b71
+  md5: 9ef4b8d4652560f3e9fddb3209adb0dd
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-kegglincs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocManager (>= 1.20.3), knitr, graph
 # SystemRequirements: Cytoscape (>= 3.3.0), Java (>= 8)
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - 'bioconductor-hgu133a.db >=3.13.0,<3.14.0'
-    - 'bioconductor-kegggraph >=1.60.0,<1.61.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-kodata >=1.26.0,<1.27.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-kegggraph >=1.62.0,<1.63.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-kodata >=1.28.0,<1.29.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - r-gtools
     - r-httr
@@ -37,12 +38,12 @@ requirements:
     - r-xml
     - 'cytoscape >=3.3.0'
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - 'bioconductor-hgu133a.db >=3.13.0,<3.14.0'
-    - 'bioconductor-kegggraph >=1.60.0,<1.61.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-kodata >=1.26.0,<1.27.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-kegggraph >=1.62.0,<1.63.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-kodata >=1.28.0,<1.29.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - r-gtools
     - r-httr
diff --git a/recipes/bioconductor-keggorthology/meta.yaml b/recipes/bioconductor-keggorthology/meta.yaml
index dc3a795c2a023..9d57eb0840070 100644
--- a/recipes/bioconductor-keggorthology/meta.yaml
+++ b/recipes/bioconductor-keggorthology/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.52.0" %}
+{% set version = "2.54.0" %}
 {% set name = "keggorthology" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: bc7b0a7f975976918bc42630a5063139
+  md5: 56d510a339dd4fb984bad81624d83142
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-keggorthology", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RBGL,ALL
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - 'bioconductor-hgu95av2.db >=3.13.0,<3.14.0'
     - r-base
     - r-dbi
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - 'bioconductor-hgu95av2.db >=3.13.0,<3.14.0'
     - r-base
     - r-dbi
diff --git a/recipes/bioconductor-keggrest/meta.yaml b/recipes/bioconductor-keggrest/meta.yaml
index 440747d88b20b..3da5fe6a36e58 100644
--- a/recipes/bioconductor-keggrest/meta.yaml
+++ b/recipes/bioconductor-keggrest/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "KEGGREST" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 884dbd36ae576a2c3c62ceec855cf077
+  md5: 805cb8808b0ffa6f57999b880337b504
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-keggrest", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, knitr, markdown
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - r-httr
     - r-png
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - r-httr
     - r-png
diff --git a/recipes/bioconductor-kidpack/meta.yaml b/recipes/bioconductor-kidpack/meta.yaml
index 613abaca81982..c56508e1335ec 100644
--- a/recipes/bioconductor-kidpack/meta.yaml
+++ b/recipes/bioconductor-kidpack/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "kidpack" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 4b8ee4f61037cd1b55cee61efe7101e9
+  md5: 26f5ad5fba1c63156e282d8eac7ac385
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-kidpack", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-kidpack/post-link.sh b/recipes/bioconductor-kidpack/post-link.sh
index 55b9d6d1a1d2d..ac98a263cffef 100644
--- a/recipes/bioconductor-kidpack/post-link.sh
+++ b/recipes/bioconductor-kidpack/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "kidpack-1.42.0"
+installBiocDataPackage.sh "kidpack-1.44.0"
diff --git a/recipes/bioconductor-kinswingr/meta.yaml b/recipes/bioconductor-kinswingr/meta.yaml
index ad5f4f07ab129..8f1012a7708bc 100644
--- a/recipes/bioconductor-kinswingr/meta.yaml
+++ b/recipes/bioconductor-kinswingr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "KinSwingR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7872f2ffd62b269f62e8a9dd5b64adba
+  md5: fae1cbd6c179b4fdd5ac12a32ce50eb7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-kinswingr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-data.table
     - r-sqldf
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-data.table
     - r-sqldf
diff --git a/recipes/bioconductor-knowseq/meta.yaml b/recipes/bioconductor-knowseq/meta.yaml
index df2607b654937..b000d31472de7 100644
--- a/recipes/bioconductor-knowseq/meta.yaml
+++ b/recipes/bioconductor-knowseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "KnowSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 73da4e117a703251b6ea5e3a5e74ff41
+  md5: b57c9661e3de8e27e79e3809a609acda
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-knowseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
   host:
-    - 'bioconductor-cqn >=1.46.0,<1.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-cqn >=1.48.0,<1.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-caret
     - r-e1071
@@ -43,10 +44,10 @@ requirements:
     - r-stringr
     - r-xml
   run:
-    - 'bioconductor-cqn >=1.46.0,<1.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-cqn >=1.48.0,<1.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-caret
     - r-e1071
diff --git a/recipes/bioconductor-kodata/meta.yaml b/recipes/bioconductor-kodata/meta.yaml
index f398239257119..c6d97424dd478 100644
--- a/recipes/bioconductor-kodata/meta.yaml
+++ b/recipes/bioconductor-kodata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "KOdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 11d0727f1c7e40be104b3d24168f2ae7
+  md5: 40e099053eae889ad66256a94427ac54
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-kodata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-kodata/post-link.sh b/recipes/bioconductor-kodata/post-link.sh
index 1040e3628131f..d0c7715575049 100644
--- a/recipes/bioconductor-kodata/post-link.sh
+++ b/recipes/bioconductor-kodata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "kodata-1.26.0"
+installBiocDataPackage.sh "kodata-1.28.0"
diff --git a/recipes/bioconductor-lace/meta.yaml b/recipes/bioconductor-lace/meta.yaml
index 6ba5c9df85469..40a6921d22e8c 100644
--- a/recipes/bioconductor-lace/meta.yaml
+++ b/recipes/bioconductor-lace/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.4.0" %}
+{% set version = "2.6.0" %}
 {% set name = "LACE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b13337a86c2b8b322531939e79e94166
+  md5: d11f64211d10d293c2931b49765b5d61
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lace", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, BiocStyle, testthat, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bsplus
     - r-callr
@@ -60,8 +61,8 @@ requirements:
     - r-svglite
     - r-tidyr
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bsplus
     - r-callr
diff --git a/recipes/bioconductor-lapmix/meta.yaml b/recipes/bioconductor-lapmix/meta.yaml
index 4b5789801fb82..76e3e6dc36bb5 100644
--- a/recipes/bioconductor-lapmix/meta.yaml
+++ b/recipes/bioconductor-lapmix/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.66.0" %}
+{% set version = "1.68.0" %}
 {% set name = "lapmix" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 088e76c4d42b5f1c432cffebd1bb0188
+  md5: 5d2611d1b39b06b05ed64ffab459a5a9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lapmix", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-lapointe.db/meta.yaml b/recipes/bioconductor-lapointe.db/meta.yaml
index e1e73ef07267e..2e19eca313c84 100644
--- a/recipes/bioconductor-lapointe.db/meta.yaml
+++ b/recipes/bioconductor-lapointe.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "LAPOINTE.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 434b25ad7411201d8be6bb1a0463b387
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lapointe.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-lbe/meta.yaml b/recipes/bioconductor-lbe/meta.yaml
index d1dd76272ef40..5c71cafda8ca6 100644
--- a/recipes/bioconductor-lbe/meta.yaml
+++ b/recipes/bioconductor-lbe/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.68.0" %}
+{% set version = "1.70.0" %}
 {% set name = "LBE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0f317f8253df3b83ef48202063e0417f
+  md5: 36559f365f1dbd53056e6b43bc1e06e9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lbe", max_pin="x.x") }}'
   noarch: generic
 # Suggests: qvalue
 requirements:
diff --git a/recipes/bioconductor-ldblock/meta.yaml b/recipes/bioconductor-ldblock/meta.yaml
index eea6863caf204..9863043358259 100644
--- a/recipes/bioconductor-ldblock/meta.yaml
+++ b/recipes/bioconductor-ldblock/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "ldblock" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 6a63dbccca085d4b33bcf2b19215c22f
+  md5: 579c380a003913fde7767f15b47a6692
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ldblock", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, knitr, BiocStyle, gwascat, rmarkdown, snpStats, VariantAnnotation, GenomeInfoDb, ensembldb, EnsDb.Hsapiens.v75, Rsamtools, GenomicFiles (>= 1.13.6)
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-httr
     - r-matrix
     - r-rlang
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-httr
     - r-matrix
diff --git a/recipes/bioconductor-lea/meta.yaml b/recipes/bioconductor-lea/meta.yaml
index aa0936c3594b2..51dd613a14f2e 100644
--- a/recipes/bioconductor-lea/meta.yaml
+++ b/recipes/bioconductor-lea/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.12.2" %}
+{% set version = "3.14.0" %}
 {% set name = "LEA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 66645aa4efbb19674772b485df256216
+  md5: e32cbc2a97921f9b911eef1a5d1ef3d7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lea", max_pin="x.x") }}'
 # Suggests: knitr
 requirements:
   host:
diff --git a/recipes/bioconductor-ledpred/meta.yaml b/recipes/bioconductor-ledpred/meta.yaml
index ef41921f97eb4..add26d8b55ec8 100644
--- a/recipes/bioconductor-ledpred/meta.yaml
+++ b/recipes/bioconductor-ledpred/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "LedPred" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0a868e369e350943980eaa621d63503c
+  md5: 4a083c0408938618b62557ece5682e61
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ledpred", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-leebamviews/meta.yaml b/recipes/bioconductor-leebamviews/meta.yaml
index 09d78a9570174..23ddd91fec827 100644
--- a/recipes/bioconductor-leebamviews/meta.yaml
+++ b/recipes/bioconductor-leebamviews/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "leeBamViews" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8364b9ac80fcc1cbdd4eca1501d6651b
+  md5: 58f7c7fdbb1f949f48924ac79d31b580
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-leebamviews", max_pin="x.x") }}'
   noarch: generic
 # Suggests: biomaRt, org.Sc.sgd.db, edgeR
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-leebamviews/post-link.sh b/recipes/bioconductor-leebamviews/post-link.sh
index 0440089dce09f..f1275b766d7ad 100644
--- a/recipes/bioconductor-leebamviews/post-link.sh
+++ b/recipes/bioconductor-leebamviews/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "leebamviews-1.36.0"
+installBiocDataPackage.sh "leebamviews-1.38.0"
diff --git a/recipes/bioconductor-lefser/meta.yaml b/recipes/bioconductor-lefser/meta.yaml
index 875f2cf293425..e6ee9347ff280 100644
--- a/recipes/bioconductor-lefser/meta.yaml
+++ b/recipes/bioconductor-lefser/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.1" %}
 {% set name = "lefser" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 02d16723642d25f2432b098f6fa4f04c
+  md5: c3b2deaf4b58de1bb930164df11a388f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lefser", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr, rmarkdown, curatedMetagenomicData, BiocStyle, testthat, pkgdown, covr, withr
+# Suggests: knitr, rmarkdown, curatedMetagenomicData, BiocStyle, phyloseq, testthat, pkgdown, covr, withr
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-coin
     - r-ggplot2
     - r-mass
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-coin
     - r-ggplot2
diff --git a/recipes/bioconductor-lemur/build.sh b/recipes/bioconductor-lemur/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-lemur/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-lemur/build_failure.osx-64.yaml b/recipes/bioconductor-lemur/build_failure.osx-64.yaml
new file mode 100644
index 0000000000000..9beef668bed41
--- /dev/null
+++ b/recipes/bioconductor-lemur/build_failure.osx-64.yaml
@@ -0,0 +1,106 @@
+recipe_sha: 9ec1f5c47eca7b1c8d8b7db53ce0866846a9c61f157f39bec7526f0c5cbe3856  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+category: |-
+  dependency issue
+log: |2-
+   - bioconductor-s4vectors >=0.40.0,<0.41.0
+   - r-base 4.3.*
+   - bioconductor-matrixgenerics >=1.14.0,<1.15.0
+   - bioconductor-singlecellexperiment >=1.24.0,<1.25.0
+
+  with channels:
+   - conda-forge
+   - bioconda
+   - defaults
+
+  The reported errors are:
+  - Encountered problems while solving:
+  -   - package bioconductor-summarizedexperiment-1.32.0-r43hdfd78af_0 requires r-base >=4.3,<4.4.0a0, but none of the providers can be installed
+  -
+
+  Leaving build/test directories:
+    Work:
+   /opt/mambaforge/envs/bioconda/conda-bld/work
+    Test:
+   /opt/mambaforge/envs/bioconda/conda-bld/test_tmp
+  Leaving build/test environments:
+    Test:
+  source activate  /opt/mambaforge/envs/bioconda/conda-bld/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla
+    Build:
+  Traceback (most recent call last):
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 141, in mamba_get_install_actions
+      solution = solver.solve_for_action(_specs, prefix)
+  source activate  /opt/mambaforge/envs/bioconda/conda-bld/_build_env
+
+
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/core/solver.py", line 244, in solve_for_action
+      t = self.solve(specs)
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/core/solver.py", line 234, in solve
+      raise RuntimeError("Solver could not find solution."  error_string)
+  RuntimeError: Solver could not find solution.Mamba failed to solve:
+   - bioconductor-hdf5array >=1.30.0,<1.31.0
+   - r-rcpparmadillo
+   - r-rcpp
+   - r-harmony
+   - r-matrixstats
+   - r-vctrs
+   - liblapack 3.9.* *netlib
+   - bioconductor-delayedmatrixstats >=1.24.0,<1.25.0
+   - bioconductor-summarizedexperiment >=1.32.0,<1.33.0
+   - libblas 3.9.* *netlib
+   - bioconductor-biocneighbors >=1.20.0,<1.21.0
+   - libcxx >=14
+   - bioconductor-biocgenerics >=0.48.0,<0.49.0
+   - r-irlba
+   - r-matrix
+   - r-rlang
+   - bioconductor-limma >=3.58.0,<3.59.0
+   - bioconductor-glmgampoi >=1.14.0,<1.15.0
+   - bioconductor-s4vectors >=0.40.0,<0.41.0
+   - r-base 4.3.*
+   - bioconductor-matrixgenerics >=1.14.0,<1.15.0
+   - bioconductor-singlecellexperiment >=1.24.0,<1.25.0
+
+  with channels:
+   - conda-forge
+   - bioconda
+   - defaults
+
+  The reported errors are:
+  - Encountered problems while solving:
+  -   - package bioconductor-summarizedexperiment-1.32.0-r43hdfd78af_0 requires r-base >=4.3,<4.4.0a0, but none of the providers can be installed
+  -
+
+  During handling of the above exception, another exception occurred:
+
+  Traceback (most recent call last):
+    File "/opt/mambaforge/envs/bioconda/bin/conda-mambabuild", line 10, in <module>
+      sys.exit(main())
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
+      call_conda_build(action, config)
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
+      result = api.build(
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
+      return build_tree(
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
+      packages_from_this = build(metadata, stats,
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 2038, in build
+      output_metas = expand_outputs([(m, need_source_download, need_reparse_in_env)])
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/render.py", line 787, in expand_outputs
+      for (output_dict, m) in deepcopy(_m).get_output_metadata_set(permit_unsatisfiable_variants=False):
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/metadata.py", line 2524, in get_output_metadata_set
+      conda_packages = finalize_outputs_pass(
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/metadata.py", line 884, in finalize_outputs_pass
+      fm = finalize_metadata(
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/render.py", line 547, in finalize_metadata
+      build_unsat, host_unsat = add_upstream_pins(m,
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/render.py", line 409, in add_upstream_pins
+      host_deps, host_unsat, extra_run_specs_from_host = _read_upstream_pin_files(m, 'host',
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/render.py", line 374, in _read_upstream_pin_files
+      deps, actions, unsat = get_env_dependencies(m, env, m.config.variant,
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/render.py", line 131, in get_env_dependencies
+      actions = environ.get_install_actions(tmpdir, tuple(dependencies), env,
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 150, in mamba_get_install_actions
+      raise err
+  conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform osx-64: {MatchSpec("r-base[version='>=4.3,<4.4.0a0']"), MatchSpec("bioconductor-summarizedexperiment==1.32.0=r43hdfd78af_0")}
+# Last 100 lines of the build log.
diff --git a/recipes/bioconductor-lemur/meta.yaml b/recipes/bioconductor-lemur/meta.yaml
new file mode 100644
index 0000000000000..71c676e618440
--- /dev/null
+++ b/recipes/bioconductor-lemur/meta.yaml
@@ -0,0 +1,78 @@
+{% set version = "1.0.4" %}
+{% set name = "lemur" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
+  md5: 76ef0d01a8f6f23e0f125274af96522d
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lemur", max_pin="x.x") }}'
+# Suggests: testthat (>= 3.0.0), tidyverse, uwot, dplyr, edgeR, knitr, rmarkdown, BiocStyle
+requirements:
+  host:
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-glmgampoi >=1.14.0,<1.15.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-harmony
+    - r-irlba
+    - r-matrix
+    - r-matrixstats
+    - r-rcpp
+    - r-rcpparmadillo
+    - r-rlang
+    - r-vctrs
+    - libblas
+    - liblapack
+  run:
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-glmgampoi >=1.14.0,<1.15.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-harmony
+    - r-irlba
+    - r-matrix
+    - r-matrixstats
+    - r-rcpp
+    - r-rcpparmadillo
+    - r-rlang
+    - r-vctrs
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - make
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'MIT + file LICENSE'
+  summary: 'Latent Embedding Multivariate Regression'
+  description: 'Fit a latent embedding multivariate regression (LEMUR) model to multi-condition single-cell data. The model provides a parametric description of single-cell data measured with complex experimental designs. The parametric model is used to (1) align conditions, (2) predict log fold changes between conditions for all cells, and (3) identify cell neighborhoods with consistent log fold changes. For those neighborhoods, a pseudobulked differential expression test is conducted to assess which genes are significantly changed.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-les/meta.yaml b/recipes/bioconductor-les/meta.yaml
index 6a17dc15d9a18..2c610c014b1e5 100644
--- a/recipes/bioconductor-les/meta.yaml
+++ b/recipes/bioconductor-les/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.50.0" %}
+{% set version = "1.52.0" %}
 {% set name = "les" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 5484dca35e8f46307aa2d8729a1ba1fa
+  md5: b0418480f87e364b451a3f940bcdcb8c
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-les", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biobase, limma
 requirements:
diff --git a/recipes/bioconductor-leukemiaseset/meta.yaml b/recipes/bioconductor-leukemiaseset/meta.yaml
index 5e567639f1d1d..d3bfaf2adc95a 100644
--- a/recipes/bioconductor-leukemiaseset/meta.yaml
+++ b/recipes/bioconductor-leukemiaseset/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "leukemiasEset" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6f2498f78d93dc35ed04c9e2e8abfad7
+  md5: f9e8274856b0d78de6da7ec0bce171f5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-leukemiaseset", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-leukemiaseset/post-link.sh b/recipes/bioconductor-leukemiaseset/post-link.sh
index d2bae20eed808..f03618f99ae1e 100644
--- a/recipes/bioconductor-leukemiaseset/post-link.sh
+++ b/recipes/bioconductor-leukemiaseset/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "leukemiaseset-1.36.0"
+installBiocDataPackage.sh "leukemiaseset-1.38.0"
diff --git a/recipes/bioconductor-levi/meta.yaml b/recipes/bioconductor-levi/meta.yaml
index a1f8a6f2379e3..863283e9eb2fd 100644
--- a/recipes/bioconductor-levi/meta.yaml
+++ b/recipes/bioconductor-levi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "levi" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: dd7ccfc06d8acb7def3c3f53cfc7680b
+  md5: fff39f74d44cb186d14ebb591b3fa3a1
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-levi", max_pin="x.x") }}'
 # Suggests: rmarkdown, BiocStyle
 requirements:
   host:
diff --git a/recipes/bioconductor-lfa/meta.yaml b/recipes/bioconductor-lfa/meta.yaml
index e3d2e660065c6..ef404bf4b9e2b 100644
--- a/recipes/bioconductor-lfa/meta.yaml
+++ b/recipes/bioconductor-lfa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.0.11" %}
+{% set version = "2.2.0" %}
 {% set name = "lfa" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 58264321db9388649768e3fc74e9a4ab
+  md5: 83d3c5671422b432d992834ae675e020
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lfa", max_pin="x.x") }}'
 # Suggests: knitr, ggplot2, testthat, BEDMatrix, genio
 requirements:
   host:
diff --git a/recipes/bioconductor-liebermanaidenhic2009/meta.yaml b/recipes/bioconductor-liebermanaidenhic2009/meta.yaml
index 53f1731a0f859..d71d5f911cfaf 100644
--- a/recipes/bioconductor-liebermanaidenhic2009/meta.yaml
+++ b/recipes/bioconductor-liebermanaidenhic2009/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.38.0" %}
+{% set version = "0.40.0" %}
 {% set name = "LiebermanAidenHiC2009" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 43f7f158c73c12d62e6cf471cd690667
+  md5: 34818101f902d251b339864716cd2d1a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-liebermanaidenhic2009", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-kernsmooth
   run:
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-kernsmooth
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-liebermanaidenhic2009/post-link.sh b/recipes/bioconductor-liebermanaidenhic2009/post-link.sh
index 44699d13bf699..e899cf7938d0f 100644
--- a/recipes/bioconductor-liebermanaidenhic2009/post-link.sh
+++ b/recipes/bioconductor-liebermanaidenhic2009/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "liebermanaidenhic2009-0.38.0"
+installBiocDataPackage.sh "liebermanaidenhic2009-0.40.0"
diff --git a/recipes/bioconductor-limma/meta.yaml b/recipes/bioconductor-limma/meta.yaml
index 6ac8b334140e0..65bacae5a6963 100644
--- a/recipes/bioconductor-limma/meta.yaml
+++ b/recipes/bioconductor-limma/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.56.2" %}
+{% set version = "3.58.1" %}
 {% set name = "limma" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 4b1df28cbb7c38b621db2ee3c42e6cc8
+  md5: f52a816d0d34b01f721654f90a1fb5f5
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
-# Suggests: affy, AnnotationDbi, BiasedUrn, Biobase, ellipse, GO.db, gplots, illuminaio, locfit, MASS, org.Hs.eg.db, splines, statmod (>= 1.2.2), vsn
+  run_exports: '{{ pin_subpackage("bioconductor-limma", max_pin="x.x") }}'
+# Suggests: BiasedUrn, ellipse, gplots, knitr, locfit, MASS, splines, affy, AnnotationDbi, Biobase, BiocStyle, GO.db, illuminaio, org.Hs.eg.db, vsn
 requirements:
   host:
     - r-base
+    - r-statmod
     - libblas
     - liblapack
   run:
     - r-base
+    - r-statmod
   build:
     - {{ compiler('c') }}
     - make
@@ -38,6 +41,8 @@ about:
   description: 'Data analysis, linear models and differential expression for microarray data.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:limma
     - usegalaxy-eu:limma_voom
diff --git a/recipes/bioconductor-limmagui/meta.yaml b/recipes/bioconductor-limmagui/meta.yaml
index 80cbd76d1e52e..f6bc9994f2951 100644
--- a/recipes/bioconductor-limmagui/meta.yaml
+++ b/recipes/bioconductor-limmagui/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.76.0" %} 
+{% set version = "1.78.0" %}
 {% set name = "limmaGUI" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cfdbc7483e30730dd2fc9072e8f96bb7
+  md5: b0c7c34dfac5955d26908f730a73b880
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-limmagui", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-r2html
     - r-tkrplot
     - r-xtable
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-r2html
     - r-tkrplot
diff --git a/recipes/bioconductor-lineagepulse/meta.yaml b/recipes/bioconductor-lineagepulse/meta.yaml
index ae7329e00d703..a99b5c3e27db3 100644
--- a/recipes/bioconductor-lineagepulse/meta.yaml
+++ b/recipes/bioconductor-lineagepulse/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.21.0" %}
 {% set name = "LineagePulse" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6b8c7c63f4301507c384fe65eee3990d
+  md5: c17825342234d6f0e327853b8fc52944
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lineagepulse", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-ggplot2
@@ -32,10 +33,10 @@ requirements:
     - r-matrix
     - r-rcolorbrewer
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-ggplot2
diff --git a/recipes/bioconductor-lineagespot/meta.yaml b/recipes/bioconductor-lineagespot/meta.yaml
index 229810771245a..a0a3a46e80bc1 100644
--- a/recipes/bioconductor-lineagespot/meta.yaml
+++ b/recipes/bioconductor-lineagespot/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "lineagespot" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: b44c5d4601a486a1047c3c5bc1f0e274
+  md5: 7a06bfea8fdf81ea88ebe7f4478607f6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lineagespot", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, RefManageR, rmarkdown, knitr, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-data.table
     - r-httr
     - r-stringr
   run:
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-data.table
     - r-httr
diff --git a/recipes/bioconductor-linkhd/meta.yaml b/recipes/bioconductor-linkhd/meta.yaml
index ef08fe0904124..c4ba0e55eb6ef 100644
--- a/recipes/bioconductor-linkhd/meta.yaml
+++ b/recipes/bioconductor-linkhd/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "LinkHD" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2d22be0c6560788254aff6967d0b953c
+  md5: 64515bedacee602d8f8c92785e075039
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-linkhd", max_pin="x.x") }}'
   noarch: generic
 # Suggests: MASS (>= 7.3.0), knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
     - r-base
     - r-cluster
     - r-data.table
@@ -34,7 +35,7 @@ requirements:
     - r-scales
     - r-vegan
   run:
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
     - r-base
     - r-cluster
     - r-data.table
diff --git a/recipes/bioconductor-linnorm/meta.yaml b/recipes/bioconductor-linnorm/meta.yaml
index fb21be3973482..baa5b5fdfc69a 100644
--- a/recipes/bioconductor-linnorm/meta.yaml
+++ b/recipes/bioconductor-linnorm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.24.1" %}
+{% set version = "2.26.0" %}
 {% set name = "Linnorm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,16 +11,17 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: aecbf8861def918c6f11fa1b10714a28
+  md5: 8fc0ff0d6e9c2d274137b0e99ce0f4a2
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
-# Suggests: BiocStyle, knitr, rmarkdown, markdown, gplots, RColorBrewer, moments, testthat
+  run_exports: '{{ pin_subpackage("bioconductor-linnorm", max_pin="x.x") }}'
+# Suggests: BiocStyle, knitr, rmarkdown, markdown, gplots, RColorBrewer, moments, testthat, matrixStats
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-amap
     - r-apcluster
     - r-base
@@ -42,7 +43,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-amap
     - r-apcluster
     - r-base
@@ -75,3 +76,8 @@ about:
   description: 'Linnorm is an algorithm for normalizing and transforming RNA-seq, single cell RNA-seq, ChIP-seq count data or any large scale count data. It has been independently reviewed by Tian et al. on Nature Methods (https://doi.org/10.1038/s41592-019-0425-8). Linnorm can work with raw count, CPM, RPKM, FPKM and TPM.'
   license_file: LICENSE
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
diff --git a/recipes/bioconductor-lintind/meta.yaml b/recipes/bioconductor-lintind/meta.yaml
index d401f17371fcc..954eb5cb07f07 100644
--- a/recipes/bioconductor-lintind/meta.yaml
+++ b/recipes/bioconductor-lintind/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "LinTInd" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 229a83bd7db103d7e92cbf8378c0dcb5
+  md5: 3dd8f8601ee8df3a0a53a02dc0c4d272
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lintind", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-ape
     - r-base
     - r-cowplot
@@ -41,11 +42,11 @@ requirements:
     - r-stringdist
     - r-stringr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-ape
     - r-base
     - r-cowplot
diff --git a/recipes/bioconductor-lionessr/meta.yaml b/recipes/bioconductor-lionessr/meta.yaml
index 7c51b62f289ac..6af7c447fb9c4 100644
--- a/recipes/bioconductor-lionessr/meta.yaml
+++ b/recipes/bioconductor-lionessr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "lionessR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3b3552c919620f8bf987753d882d5802
+  md5: 4301a7fed98cbe717433fa80791ad9a6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lionessr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, igraph, reshape2, limma,
 requirements:
   host:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-lipidr/meta.yaml b/recipes/bioconductor-lipidr/meta.yaml
index 757575e6e210e..046cb235bf30f 100644
--- a/recipes/bioconductor-lipidr/meta.yaml
+++ b/recipes/bioconductor-lipidr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.14.1" %}
+{% set version = "2.16.0" %}
 {% set name = "lipidr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f8d642d778bcb314c248231f46ddad43
+  md5: 27b17acc2b4de0439304799e0a7cba2a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lipidr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, ggrepel, plotly, spelling, testthat
 requirements:
   host:
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-ropls >=1.32.0,<1.33.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-ropls >=1.34.0,<1.35.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -36,11 +37,11 @@ requirements:
     - r-rlang
     - r-tidyr
   run:
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-ropls >=1.32.0,<1.33.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-ropls >=1.34.0,<1.35.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-dplyr
diff --git a/recipes/bioconductor-liquidassociation/meta.yaml b/recipes/bioconductor-liquidassociation/meta.yaml
index 7a4f3a1785241..456d16ad1c383 100644
--- a/recipes/bioconductor-liquidassociation/meta.yaml
+++ b/recipes/bioconductor-liquidassociation/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.54.0" %}
+{% set version = "1.56.0" %}
 {% set name = "LiquidAssociation" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ea14603091d58ee44de956e48a0911bb
+  md5: b484ed119d8ef9ebb19bfd7497eb33af
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-liquidassociation", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-org.sc.sgd.db >=3.17.0,<3.18.0'
-    - 'bioconductor-yeastcc >=1.40.0,<1.41.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-org.sc.sgd.db >=3.18.0,<3.19.0'
+    - 'bioconductor-yeastcc >=1.42.0,<1.43.0'
     - r-base
     - r-geepack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-org.sc.sgd.db >=3.17.0,<3.18.0'
-    - 'bioconductor-yeastcc >=1.40.0,<1.41.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-org.sc.sgd.db >=3.18.0,<3.19.0'
+    - 'bioconductor-yeastcc >=1.42.0,<1.43.0'
     - r-base
     - r-geepack
 test:
diff --git a/recipes/bioconductor-lisaclust/meta.yaml b/recipes/bioconductor-lisaclust/meta.yaml
index fe1b83d19530e..0658217e488ff 100644
--- a/recipes/bioconductor-lisaclust/meta.yaml
+++ b/recipes/bioconductor-lisaclust/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.1" %}
 {% set name = "lisaClust" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 91925b5c9bbe5d0f3afb6e81b1496003
+  md5: fa6fe90f1866b21dce3d34bb8471c9e1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lisaclust", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-spicyr >=1.12.0,<1.13.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-spicyr >=1.14.0,<1.15.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-class
     - r-concaveman
@@ -38,15 +39,16 @@ requirements:
     - r-purrr
     - r-spatstat.explore
     - r-spatstat.geom
+    - r-spatstat.random
     - r-tidyr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-spicyr >=1.12.0,<1.13.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-spicyr >=1.14.0,<1.15.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-class
     - r-concaveman
@@ -57,6 +59,7 @@ requirements:
     - r-purrr
     - r-spatstat.explore
     - r-spatstat.geom
+    - r-spatstat.random
     - r-tidyr
 test:
   commands:
diff --git a/recipes/bioconductor-listeretalbsseq/meta.yaml b/recipes/bioconductor-listeretalbsseq/meta.yaml
index 5a665140c3d5e..dee27377bbb58 100644
--- a/recipes/bioconductor-listeretalbsseq/meta.yaml
+++ b/recipes/bioconductor-listeretalbsseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.1" %}
+{% set version = "1.34.0" %}
 {% set name = "ListerEtAlBSseq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8b0138cce25976d0d9180442505679d2
+  md5: 302e026ae021a5f26c149b5086569db1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-listeretalbsseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Hsapiens.UCSC.hg18
 requirements:
   host:
-    - 'bioconductor-methylpipe >=1.34.0,<1.35.0'
+    - 'bioconductor-methylpipe >=1.36.0,<1.37.0'
     - r-base
   run:
-    - 'bioconductor-methylpipe >=1.34.0,<1.35.0'
+    - 'bioconductor-methylpipe >=1.36.0,<1.37.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-listeretalbsseq/post-link.sh b/recipes/bioconductor-listeretalbsseq/post-link.sh
index b6aae194fcd09..683046c9aced0 100644
--- a/recipes/bioconductor-listeretalbsseq/post-link.sh
+++ b/recipes/bioconductor-listeretalbsseq/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "listeretalbsseq-1.32.1"
+installBiocDataPackage.sh "listeretalbsseq-1.34.0"
diff --git a/recipes/bioconductor-lmdme/meta.yaml b/recipes/bioconductor-lmdme/meta.yaml
index 946b71daa6bf8..3a621770cd470 100644
--- a/recipes/bioconductor-lmdme/meta.yaml
+++ b/recipes/bioconductor-lmdme/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "lmdme" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 66a2da7ce067e15aab8fccdb7f124eed
+  md5: 9a1b98d738df482adb30496ac028b924
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lmdme", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-stemhypoxia >=1.36.0,<1.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-stemhypoxia >=1.38.0,<1.39.0'
     - r-base
     - r-pls
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-stemhypoxia >=1.36.0,<1.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-stemhypoxia >=1.38.0,<1.39.0'
     - r-base
     - r-pls
 test:
diff --git a/recipes/bioconductor-lobstahs/meta.yaml b/recipes/bioconductor-lobstahs/meta.yaml
index dada12f2bd5f3..eea31dbdaeae0 100644
--- a/recipes/bioconductor-lobstahs/meta.yaml
+++ b/recipes/bioconductor-lobstahs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "LOBSTAHS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f66c6f04dd23801992184f8b1f6515ec
+  md5: 45092babf761359e504ae5ad71d21ab8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lobstahs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: PtH2O2lipids, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-camera >=1.56.0,<1.57.0'
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-camera >=1.58.0,<1.59.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-base
   run:
-    - 'bioconductor-camera >=1.56.0,<1.57.0'
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-camera >=1.58.0,<1.59.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-loci2path/meta.yaml b/recipes/bioconductor-loci2path/meta.yaml
index fc0b0ebc53368..a8e5177b97e07 100644
--- a/recipes/bioconductor-loci2path/meta.yaml
+++ b/recipes/bioconductor-loci2path/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "loci2path" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: b0dfe9a1ddd6aa3d993d369c452786ea
+  md5: 3527f58dccf385bbc6f71a4c659a37c5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-loci2path", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-pheatmap
     - r-rcolorbrewer
     - r-wordcloud
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-pheatmap
diff --git a/recipes/bioconductor-logicfs/meta.yaml b/recipes/bioconductor-logicfs/meta.yaml
index d8e679ffb6237..6824cb2b44a4e 100644
--- a/recipes/bioconductor-logicfs/meta.yaml
+++ b/recipes/bioconductor-logicfs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.20.0" %}
+{% set version = "2.22.0" %}
 {% set name = "logicFS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f4840a9d851ffe6dbbb08fa539ddbb5b
+  md5: af46ee02e89efc5057af01be3f530a4f
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-logicfs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: genefilter, siggenes
 requirements:
diff --git a/recipes/bioconductor-lola/meta.yaml b/recipes/bioconductor-lola/meta.yaml
index 88217cfeea8ac..58d33f706a825 100644
--- a/recipes/bioconductor-lola/meta.yaml
+++ b/recipes/bioconductor-lola/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "LOLA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f85cca2393dba22ce00574478e065c11
+  md5: e3ff8271b0433c6098fd7380af165742
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lola", max_pin="x.x") }}'
   noarch: generic
 # Suggests: parallel, testthat, knitr, BiocStyle, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-reshape2
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-reshape2
diff --git a/recipes/bioconductor-loomexperiment/meta.yaml b/recipes/bioconductor-loomexperiment/meta.yaml
index 514eb89c78660..a46c9fe2eeebc 100644
--- a/recipes/bioconductor-loomexperiment/meta.yaml
+++ b/recipes/bioconductor-loomexperiment/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "LoomExperiment" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 48fb26e59c5d77ce931e53d1dd251334
+  md5: f69aaf53b56cebfe748b8c0c029af481
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-loomexperiment", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle, knitr, rmarkdown, reticulate
 requirements:
   host:
-    - 'bioconductor-biocio >=1.10.0,<1.11.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocio >=1.12.0,<1.13.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - r-stringr
   run:
-    - 'bioconductor-biocio >=1.10.0,<1.11.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocio >=1.12.0,<1.13.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - r-stringr
diff --git a/recipes/bioconductor-lowmacaannotation/meta.yaml b/recipes/bioconductor-lowmacaannotation/meta.yaml
index e9be52191301f..5ad4a74a0e5db 100644
--- a/recipes/bioconductor-lowmacaannotation/meta.yaml
+++ b/recipes/bioconductor-lowmacaannotation/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.3" %}
 {% set name = "LowMACAAnnotation" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 9e0d3fe7f30fe48aef9c4387eb5bacfa
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lowmacaannotation", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-lpe/meta.yaml b/recipes/bioconductor-lpe/meta.yaml
index ff237d9fe0b82..d286d7876465c 100644
--- a/recipes/bioconductor-lpe/meta.yaml
+++ b/recipes/bioconductor-lpe/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.74.0" %}
+{% set version = "1.76.0" %}
 {% set name = "LPE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 583b56963ed12c046a559fe3db8e3a4c
+  md5: 9001fbe949f64e59e79de1f81bd4aa01
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lpe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-lpeadj/meta.yaml b/recipes/bioconductor-lpeadj/meta.yaml
index 5d8587e24b716..c56a4a44fc24f 100644
--- a/recipes/bioconductor-lpeadj/meta.yaml
+++ b/recipes/bioconductor-lpeadj/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.60.0" %}
+{% set version = "1.62.0" %}
 {% set name = "LPEadj" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 54870f0c718c22c66d51a3831463415b
+  md5: ebb9c5bc6d113688787fadb2739bc75a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lpeadj", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-lpe >=1.74.0,<1.75.0'
+    - 'bioconductor-lpe >=1.76.0,<1.77.0'
     - r-base
   run:
-    - 'bioconductor-lpe >=1.74.0,<1.75.0'
+    - 'bioconductor-lpe >=1.76.0,<1.77.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-lpnet/meta.yaml b/recipes/bioconductor-lpnet/meta.yaml
index ef802e2badfa7..b0d2a9dd75db3 100644
--- a/recipes/bioconductor-lpnet/meta.yaml
+++ b/recipes/bioconductor-lpnet/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.32.0" %}
+{% set version = "2.34.0" %}
 {% set name = "lpNet" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: bdabe53b6db49978cb400e44c75651f7
+  md5: b2aa2f27ba2f75f595f718f9c9f6e737
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lpnet", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-lpsymphony/build.sh b/recipes/bioconductor-lpsymphony/build.sh
index daad3abb543cb..b12d3b6a8730e 100644
--- a/recipes/bioconductor-lpsymphony/build.sh
+++ b/recipes/bioconductor-lpsymphony/build.sh
@@ -10,4 +10,4 @@ CXX11=$CXX
 CXX14=$CXX" > ~/.R/Makevars
 sed -i.bak "s/-TP//" src/SYMPHONY/SYMPHONY/configure.ac
 sed -i.bak "s/-TP//" src/SYMPHONY/SYMPHONY/configure
-$R CMD INSTALL --build .
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-lpsymphony/build_failure.linux-64.yaml b/recipes/bioconductor-lpsymphony/build_failure.linux-64.yaml
new file mode 100644
index 0000000000000..7895e96771c2c
--- /dev/null
+++ b/recipes/bioconductor-lpsymphony/build_failure.linux-64.yaml
@@ -0,0 +1,104 @@
+recipe_sha: fc3c0b78a302a196c67dd12bb2d7378a8e0cfce2422bd52ac55af76b95b1b9c6  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+log: |-
+  checking if $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c supports -c -o file.o... yes
+  checking whether the $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c linker ($BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ld) supports shared libraries... yes
+  cat: ld.so.conf.d/*.conf: No such file or directory
+  checking dynamic linker characteristics... GNU/Linux ld.so
+  checking how to hardcode library paths into programs... immediate
+  appending configuration tag "F77" to libtool
+  checking if libtool supports shared libraries... yes
+  checking whether to build shared libraries... no
+  checking whether to build static libraries... yes
+  checking for x86_64-conda-linux-gnu-gfortran option to produce PIC... -fPIC
+  checking if x86_64-conda-linux-gnu-gfortran PIC flag -fPIC works... yes
+  checking if x86_64-conda-linux-gnu-gfortran static flag -static works... no
+  checking if x86_64-conda-linux-gnu-gfortran supports -c -o file.o... yes
+  checking whether the x86_64-conda-linux-gnu-gfortran linker ($BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ld) supports shared libraries... yes
+  cat: ld.so.conf.d/*.conf: No such file or directory
+  checking dynamic linker characteristics... GNU/Linux ld.so
+  checking how to hardcode library paths into programs... immediate
+  configure: Build is "x86_64-conda-linux-gnu".
+  checking if library version is set... no
+  checking whether source of project Blas is available and should be compiled... no, source file ./ThirdParty/Blas/daxpy.f not available
+  checking whether source of project Lapack is available and should be compiled... no, source file ./ThirdParty/Lapack/LAPACK/SRC/dlarf.f not available
+  checking whether source of project Glpk is available and should be compiled... no, source file ./ThirdParty/Glpk/glpk/src/glplpx01.c not available
+  checking whether source of project Sample is available and should be compiled... no
+  checking whether source of project miblib3 is available and should be compiled... no
+  checking whether source of project CoinUtils is available and should be compiled... yes, source in CoinUtils
+  checking whether source of project Osi is available and should be compiled... yes, source in Osi
+  checking whether source of project Clp is available and should be compiled... yes, source in Clp
+  checking whether source of project Cgl is available and should be compiled... yes, source in Cgl
+  checking whether source of project DyLP is available and should be compiled... no
+  checking whether source of project Vol is available and should be compiled... no
+  checking whether source of project SYMPHONY is available and should be compiled... yes, source in SYMPHONY
+  checking whether Clp is required... yes
+  checking which command should be used to link input files... ln -s
+  configure: creating ./config.status
+  config.status: creating Makefile
+  config.status: executing depfiles commands
+  configure: configuring in CoinUtils
+  configure: running /bin/sh './configure' --prefix=$SRC_DIR/src/SYMPHONY  '--enable-static' '--disable-shared' '--with-pic' '--with-application=no' '--disable-dependency-tracking' '--disable-zlib' '--disable-bzlib' '--disable-cplex-libcheck' '--disable-glpk-libcheck' '--disable-osl-libcheck' '--disable-soplex-libcheck' '--disable-xpress-libcheck' 'CFLAGS=-w -g -O2' 'CXXFLAGS=-w -g -O2' 'CC=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc' 'CPPFLAGS=-DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include' 'CPP=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cpp' 'CXX=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c' 'LDFLAGS=-Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,$PREFIX/lib -Wl,-rpath-link,$PREFIX/lib -L$PREFIX/lib' 'build_alias=x86_64-conda-linux-gnu' 'host_alias=x86_64-conda-linux-gnu' --cache-file=/dev/null --srcdir=.
+  configure: loading site script $SRC_DIR/src/SYMPHONY/share/config.site
+  checking build system type... x86_64-conda-linux-gnu
+  checking for svnversion... no
+  checking whether we want to compile in debug mode... no
+  checking for x86_64-conda-linux-gnu-gcc... $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc
+  checking for C compiler default output file name... a.out
+  checking whether the C compiler works... yes
+  checking whether we are cross compiling... no
+  checking for suffix of executables...
+  checking for suffix of object files... o
+  checking whether we are using the GNU C compiler... yes
+  checking whether $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc accepts -g... yes
+  checking for $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc option to accept ANSI C... none needed
+  configure: C compiler options are: -w -g -O2   -DCOINUTILS_BUILD
+  checking for x86_64-conda-linux-gnu-g... $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c
+  checking whether we are using the GNU C compiler... yes
+  checking whether $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c accepts -g... yes
+  checking whether C compiler $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c works... yes
+  configure: C compiler options are: -w -g -O2   -DCOINUTILS_BUILD
+  configure: Trying to determine Fortran compiler name
+  checking for x86_64-conda-linux-gnu-gfortran... x86_64-conda-linux-gnu-gfortran
+  checking for x86_64-conda-linux-gnu-gfortran... (cached) x86_64-conda-linux-gnu-gfortran
+  checking whether we are using the GNU Fortran 77 compiler... yes
+  checking whether x86_64-conda-linux-gnu-gfortran accepts -g... yes
+  configure: Fortran compiler options are: -O3 -pipe
+  checking how to get verbose linking output from x86_64-conda-linux-gnu-gfortran... -v
+  checking for Fortran libraries of x86_64-conda-linux-gnu-gfortran...  -L$PREFIX/lib -L$PREFIX/bin/../lib/gcc/x86_64-conda-linux-gnu/13.2.0 -L$PREFIX/bin/../lib/gcc -L$PREFIX/bin/../lib/gcc/x86_64-conda-linux-gnu/13.2.0/../../../../x86_64-conda-linux-gnu/lib/../lib -L$PREFIX/bin/../lib/gcc/x86_64-conda-linux-gnu/13.2.0/../../../../lib -L$PREFIX/bin/../x86_64-conda-linux-gnu/sysroot/lib/../lib -L$PREFIX/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib/../lib -L$PREFIX/bin/../lib/gcc/x86_64-conda-linux-gnu/13.2.0/../../../../x86_64-conda-linux-gnu/lib -L$PREFIX/bin/../lib/gcc/x86_64-conda-linux-gnu/13.2.0/../../.. -L$PREFIX/bin/../x86_64-conda-linux-gnu/sysroot/lib -L$PREFIX/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib -lgfortran -lm -lgcc_s -lquadmath
+  configure: Corrected Fortran libraries:  -L$PREFIX/lib -L$PREFIX/bin/../lib/gcc/x86_64-conda-linux-gnu/13.2.0 -L$PREFIX/bin/../lib/gcc -L$PREFIX/bin/../lib/gcc/x86_64-conda-linux-gnu/13.2.0/../../../../x86_64-conda-linux-gnu/lib/../lib -L$PREFIX/bin/../lib/gcc/x86_64-conda-linux-gnu/13.2.0/../../../../lib -L$PREFIX/bin/../x86_64-conda-linux-gnu/sysroot/lib/../lib -L$PREFIX/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib/../lib -L$PREFIX/bin/../lib/gcc/x86_64-conda-linux-gnu/13.2.0/../../../../x86_64-conda-linux-gnu/lib -L$PREFIX/bin/../lib/gcc/x86_64-conda-linux-gnu/13.2.0/../../.. -L$PREFIX/bin/../x86_64-conda-linux-gnu/sysroot/lib -L$PREFIX/bin/../x86_64-conda-linux-gnu/sysroot/usr/lib -lgfortran -lm -lquadmath
+  configure: error: linking to Fortran libraries from C fails
+  See config.log' for more details.
+  checking for dummy main to link with Fortran libraries... unknown
+  configure: error: /bin/sh './configure' failed for CoinUtils
+  ** libs
+  using C compiler: x86_64-conda-linux-gnu-c (conda-forge gcc 12.3.0-3) 12.3.0
+  make[1]: Entering directory '$SRC_DIR/src/SYMPHONY'
+  Making all in CoinUtils
+  make[2]: *** No rule to make target 'all'.  Stop.
+  make[2]: Entering directory '$SRC_DIR/src/SYMPHONY/CoinUtils'
+  make[2]: Leaving directory '$SRC_DIR/src/SYMPHONY/CoinUtils'
+  make[1]: *** [Makefile:324: all-recursive] Error 1
+  make[1]: Leaving directory '$SRC_DIR/src/SYMPHONY'
+  make: *** [Makevars:14: SYMPHONY.ts] Error 2
+  ERROR: compilation failed for package lpsymphony
+  * removing /opt/conda/conda-bld/bioconductor-lpsymphony_1703079915102/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/R/library/lpsymphony
+  Traceback (most recent call last):
+    File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
+      sys.exit(main())
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
+      call_conda_build(action, config)
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
+      result = api.build(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
+      return build_tree(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
+      packages_from_this = build(metadata, stats,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
+      utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
+      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
+      raise subprocess.CalledProcessError(proc.returncode, _args)
+  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/bioconductor-lpsymphony_1703079915102/work/conda_build.sh']' returned non-zero exit status 1.
+# Last 100 lines of the build log.
diff --git a/recipes/bioconductor-lpsymphony/meta.yaml b/recipes/bioconductor-lpsymphony/meta.yaml
index 59fe830c990dd..141bac727f2ab 100644
--- a/recipes/bioconductor-lpsymphony/meta.yaml
+++ b/recipes/bioconductor-lpsymphony/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.1" %}
+{% set version = "1.30.0" %}
 {% set name = "lpsymphony" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: a04276f8329ae09e82e3e16bc3a7b78e
+  md5: 106ec54272f27574ea1eea2d5721d7e4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lpsymphony", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, testthat
 # SystemRequirements: GNU make
 requirements:
diff --git a/recipes/bioconductor-lrbasedbi/meta.yaml b/recipes/bioconductor-lrbasedbi/meta.yaml
index 49e21f44674dc..ea0d85aceaab3 100644
--- a/recipes/bioconductor-lrbasedbi/meta.yaml
+++ b/recipes/bioconductor-lrbasedbi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.10.0" %}
+{% set version = "2.12.0" %}
 {% set name = "LRBaseDbi" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 557f533713533ea65e003805bed36368
+  md5: 4ed780d2b26059691bd1a1e859ca5003
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lrbasedbi", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-dbi
     - r-rsqlite
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-dbi
     - r-rsqlite
diff --git a/recipes/bioconductor-lrcell/meta.yaml b/recipes/bioconductor-lrcell/meta.yaml
index 4478c83b35c15..e7c109ef9e482 100644
--- a/recipes/bioconductor-lrcell/meta.yaml
+++ b/recipes/bioconductor-lrcell/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "LRcell" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 38340be2b5eefde6251d6dc2fb14aff7
+  md5: 845d68fab279d4a81933621a81085179
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lrcell", max_pin="x.x") }}'
   noarch: generic
 # Suggests: LRcellTypeMarkers, BiocStyle, knitr, rmarkdown, roxygen2, testthat
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - r-dplyr
     - r-ggplot2
     - r-ggrepel
     - r-magrittr
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-lrcelltypemarkers/meta.yaml b/recipes/bioconductor-lrcelltypemarkers/meta.yaml
index d4d5a86cb8c07..ab499894e1e20 100644
--- a/recipes/bioconductor-lrcelltypemarkers/meta.yaml
+++ b/recipes/bioconductor-lrcelltypemarkers/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "LRcellTypeMarkers" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 342747afa842b8009a5e2a6183c1bd83
+  md5: f5731667b56b631291d22a830d212f04
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lrcelltypemarkers", max_pin="x.x") }}'
   noarch: generic
 # Suggests: LRcell, BiocStyle, knitr, rmarkdown, roxygen2, testthat
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-lrcelltypemarkers/post-link.sh b/recipes/bioconductor-lrcelltypemarkers/post-link.sh
index a402099179b36..5ea30236a697f 100644
--- a/recipes/bioconductor-lrcelltypemarkers/post-link.sh
+++ b/recipes/bioconductor-lrcelltypemarkers/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "lrcelltypemarkers-1.8.0"
+installBiocDataPackage.sh "lrcelltypemarkers-1.10.0"
diff --git a/recipes/bioconductor-lumi/meta.yaml b/recipes/bioconductor-lumi/meta.yaml
index 6ebb4746e410d..1511bffa3477a 100644
--- a/recipes/bioconductor-lumi/meta.yaml
+++ b/recipes/bioconductor-lumi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.52.0" %}
+{% set version = "2.54.0" %}
 {% set name = "lumi" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: e8abe917a62ecdf21d85b510773a0bed
+  md5: 59fdd5b0a2e145d7a8772635121bb2ec
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lumi", max_pin="x.x") }}'
   noarch: generic
 # Suggests: beadarray, limma, vsn, lumiBarnes, lumiHumanAll.db, lumiHumanIDMapping, genefilter, RColorBrewer
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-methylumi >=2.46.0,<2.47.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-methylumi >=2.48.0,<2.49.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - r-kernsmooth
@@ -38,14 +39,14 @@ requirements:
     - r-nleqslv
     - r-rsqlite
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-methylumi >=2.46.0,<2.47.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-methylumi >=2.48.0,<2.49.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - r-kernsmooth
diff --git a/recipes/bioconductor-lumibarnes/meta.yaml b/recipes/bioconductor-lumibarnes/meta.yaml
index 7833a1d0b2a49..a83dcd4119b6d 100644
--- a/recipes/bioconductor-lumibarnes/meta.yaml
+++ b/recipes/bioconductor-lumibarnes/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "lumiBarnes" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 971e2cf62606ab98813418f8032b20dc
+  md5: 2be75f5470fd60f9919045fc8147b613
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lumibarnes", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-lumibarnes/post-link.sh b/recipes/bioconductor-lumibarnes/post-link.sh
index 4ea7acd69238d..96d26854e3ad0 100644
--- a/recipes/bioconductor-lumibarnes/post-link.sh
+++ b/recipes/bioconductor-lumibarnes/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "lumibarnes-1.40.0"
+installBiocDataPackage.sh "lumibarnes-1.42.0"
diff --git a/recipes/bioconductor-lumihumanall.db/meta.yaml b/recipes/bioconductor-lumihumanall.db/meta.yaml
index 22fcb67087468..e61a5dd476ab5 100644
--- a/recipes/bioconductor-lumihumanall.db/meta.yaml
+++ b/recipes/bioconductor-lumihumanall.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.22.0" %}
 {% set name = "lumiHumanAll.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: ce7e219b50833ceab203f0bbfb11d917
 build:
-  number: 14
+  number: 15
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lumihumanall.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-lumihumanidmapping/meta.yaml b/recipes/bioconductor-lumihumanidmapping/meta.yaml
index ee31fe63c1247..6a28062e422f4 100644
--- a/recipes/bioconductor-lumihumanidmapping/meta.yaml
+++ b/recipes/bioconductor-lumihumanidmapping/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.10.1" %}
 {% set name = "lumiHumanIDMapping" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,24 +13,25 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 007e5aa2f1596cc08d888ba6dce7148a
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lumihumanidmapping", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
     - r-base
     - r-dbi
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
     - r-base
     - r-dbi
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-lumimouseall.db/meta.yaml b/recipes/bioconductor-lumimouseall.db/meta.yaml
index 1c8ed90955b5d..7046c1ded1218 100644
--- a/recipes/bioconductor-lumimouseall.db/meta.yaml
+++ b/recipes/bioconductor-lumimouseall.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.22.0" %}
 {% set name = "lumiMouseAll.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 6f12330377aaddc83bfa9c37477b999e
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lumimouseall.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-lumimouseidmapping/meta.yaml b/recipes/bioconductor-lumimouseidmapping/meta.yaml
index 944b71d3a338c..4d70e4fb54cf8 100644
--- a/recipes/bioconductor-lumimouseidmapping/meta.yaml
+++ b/recipes/bioconductor-lumimouseidmapping/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.10.0" %}
 {% set name = "lumiMouseIDMapping" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 305aba80ebf6ef4c26899302ea9e50e8
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lumimouseidmapping", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-lumiratall.db/meta.yaml b/recipes/bioconductor-lumiratall.db/meta.yaml
index 4b230f3339cde..2bec6ec9618a5 100644
--- a/recipes/bioconductor-lumiratall.db/meta.yaml
+++ b/recipes/bioconductor-lumiratall.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.22.0" %}
 {% set name = "lumiRatAll.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 65027624574d5e33f18b0a54a54f4be9
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lumiratall.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-lumiratidmapping/meta.yaml b/recipes/bioconductor-lumiratidmapping/meta.yaml
index 373ae2eee954b..fa2629353e6c9 100644
--- a/recipes/bioconductor-lumiratidmapping/meta.yaml
+++ b/recipes/bioconductor-lumiratidmapping/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.10.0" %}
 {% set name = "lumiRatIDMapping" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 1122fc25e3fff62678bed36f9d7b5709
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lumiratidmapping", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-lungcanceracvssccgeo/meta.yaml b/recipes/bioconductor-lungcanceracvssccgeo/meta.yaml
index 5a52744c9da9d..5af4751df9291 100644
--- a/recipes/bioconductor-lungcanceracvssccgeo/meta.yaml
+++ b/recipes/bioconductor-lungcanceracvssccgeo/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "LungCancerACvsSCCGEO" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4313ab0bff32de6945d2b4e159979b4f
+  md5: f353aa0cc36dc25e67cdf1ba0738985e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lungcanceracvssccgeo", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-lungcanceracvssccgeo/post-link.sh b/recipes/bioconductor-lungcanceracvssccgeo/post-link.sh
index 6145d97cbb5fb..b44b1fa903eb7 100644
--- a/recipes/bioconductor-lungcanceracvssccgeo/post-link.sh
+++ b/recipes/bioconductor-lungcanceracvssccgeo/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "lungcanceracvssccgeo-1.36.0"
+installBiocDataPackage.sh "lungcanceracvssccgeo-1.38.0"
diff --git a/recipes/bioconductor-lungcancerlines/meta.yaml b/recipes/bioconductor-lungcancerlines/meta.yaml
index 085d28a4fdb82..a54b8590d329e 100644
--- a/recipes/bioconductor-lungcancerlines/meta.yaml
+++ b/recipes/bioconductor-lungcancerlines/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.38.0" %}
+{% set version = "0.40.0" %}
 {% set name = "LungCancerLines" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: be24350e8e8312e9421f0f4dd1ffbf85
+  md5: 17b67ca0eac14ef832832b949972b277
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lungcancerlines", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
   run:
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-lungcancerlines/post-link.sh b/recipes/bioconductor-lungcancerlines/post-link.sh
index 0e6a6de527781..3191b811f3162 100644
--- a/recipes/bioconductor-lungcancerlines/post-link.sh
+++ b/recipes/bioconductor-lungcancerlines/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "lungcancerlines-0.38.0"
+installBiocDataPackage.sh "lungcancerlines-0.40.0"
diff --git a/recipes/bioconductor-lungexpression/meta.yaml b/recipes/bioconductor-lungexpression/meta.yaml
index b89c507fd4577..13240159ee3d6 100644
--- a/recipes/bioconductor-lungexpression/meta.yaml
+++ b/recipes/bioconductor-lungexpression/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.38.0" %}
+{% set version = "0.40.0" %}
 {% set name = "lungExpression" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 56e3a841d35e5167328f7a3cc3f04349
+  md5: 35eab717cb2e24c92faf417ad7fb9cb8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lungexpression", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-lungexpression/post-link.sh b/recipes/bioconductor-lungexpression/post-link.sh
index 68c94b5c0228b..a98eb220db162 100644
--- a/recipes/bioconductor-lungexpression/post-link.sh
+++ b/recipes/bioconductor-lungexpression/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "lungexpression-0.38.0"
+installBiocDataPackage.sh "lungexpression-0.40.0"
diff --git a/recipes/bioconductor-lydata/meta.yaml b/recipes/bioconductor-lydata/meta.yaml
index ea78d701bde18..5bd099c210424 100644
--- a/recipes/bioconductor-lydata/meta.yaml
+++ b/recipes/bioconductor-lydata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "lydata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: caffcda965c0d055e69f6f0eb2fe9d67
+  md5: 4541ec0aad2bbee135b19b0bed4ea0af
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lydata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-lydata/post-link.sh b/recipes/bioconductor-lydata/post-link.sh
index b3fde371b303b..1e814b39963f5 100644
--- a/recipes/bioconductor-lydata/post-link.sh
+++ b/recipes/bioconductor-lydata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "lydata-1.26.0"
+installBiocDataPackage.sh "lydata-1.28.0"
diff --git a/recipes/bioconductor-lymphoseq/meta.yaml b/recipes/bioconductor-lymphoseq/meta.yaml
index 5b8ca6d01685f..444c73883de46 100644
--- a/recipes/bioconductor-lymphoseq/meta.yaml
+++ b/recipes/bioconductor-lymphoseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "LymphoSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 88d2862cfcae6c156660190a4dcf631c
+  md5: c7a311767150648a29d45e5cd5ee5c30
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lymphoseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, pheatmap, wordcloud, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
     - 'bioconductor-lymphoseqdb >=0.99.0,<0.100.0'
-    - 'bioconductor-msa >=1.32.0,<1.33.0'
+    - 'bioconductor-msa >=1.34.0,<1.35.0'
     - r-base
     - r-circlize
     - r-data.table
@@ -39,10 +40,10 @@ requirements:
     - r-upsetr
     - r-venndiagram
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
     - 'bioconductor-lymphoseqdb >=0.99.0,<0.100.0'
-    - 'bioconductor-msa >=1.32.0,<1.33.0'
+    - 'bioconductor-msa >=1.34.0,<1.35.0'
     - r-base
     - r-circlize
     - r-data.table
diff --git a/recipes/bioconductor-lymphoseqdb/meta.yaml b/recipes/bioconductor-lymphoseqdb/meta.yaml
index e6bf9ca1dd2c0..9ae31ac173cd1 100644
--- a/recipes/bioconductor-lymphoseqdb/meta.yaml
+++ b/recipes/bioconductor-lymphoseqdb/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.2" %}
 {% set name = "LymphoSeqDB" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 22fc0dc2439ef497982a5ffddda1e418
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-lymphoseqdb", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-m10kcod.db/meta.yaml b/recipes/bioconductor-m10kcod.db/meta.yaml
index cd3a43bcb94bf..82e91d08de883 100644
--- a/recipes/bioconductor-m10kcod.db/meta.yaml
+++ b/recipes/bioconductor-m10kcod.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.4.0" %}
 {% set name = "m10kcod.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 04811628e4b37cd6d24e0b2a17d79ab8
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-m10kcod.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-m20kcod.db/meta.yaml b/recipes/bioconductor-m20kcod.db/meta.yaml
index 8e44660a56326..6f7477b00a514 100644
--- a/recipes/bioconductor-m20kcod.db/meta.yaml
+++ b/recipes/bioconductor-m20kcod.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.4.0" %}
 {% set name = "m20kcod.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: f2f734fb41e1ae4e949abf09687733bf
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-m20kcod.db", max_pin="x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - bioconductor-data-packages >=20231202
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-m3c/meta.yaml b/recipes/bioconductor-m3c/meta.yaml
index 582342cbed4ad..d5ae69bc55ced 100644
--- a/recipes/bioconductor-m3c/meta.yaml
+++ b/recipes/bioconductor-m3c/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "M3C" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a15f91d6f63abdcffa1131c797fd619c
+  md5: e04534528d39712026e9b1de15a12c3d
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-m3c", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
diff --git a/recipes/bioconductor-m3dexampledata/meta.yaml b/recipes/bioconductor-m3dexampledata/meta.yaml
index 211786630fde3..f1420a70bec4e 100644
--- a/recipes/bioconductor-m3dexampledata/meta.yaml
+++ b/recipes/bioconductor-m3dexampledata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "M3DExampleData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1181ab509a8a85961ef586709f3eaba3
+  md5: 6988767aab7572ae3e701fd6854c061f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-m3dexampledata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-m3dexampledata/post-link.sh b/recipes/bioconductor-m3dexampledata/post-link.sh
index 77c73e1387515..72da968afa952 100644
--- a/recipes/bioconductor-m3dexampledata/post-link.sh
+++ b/recipes/bioconductor-m3dexampledata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "m3dexampledata-1.26.0"
+installBiocDataPackage.sh "m3dexampledata-1.28.0"
diff --git a/recipes/bioconductor-m3drop/meta.yaml b/recipes/bioconductor-m3drop/meta.yaml
index c72f822e24787..29a92577f3e60 100644
--- a/recipes/bioconductor-m3drop/meta.yaml
+++ b/recipes/bioconductor-m3drop/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "M3Drop" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3d8dec066ec2a494fd8e2b9c2771ab37
+  md5: ad347f93f1a297543e7ab0e74437dd4d
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-m3drop", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ROCR, knitr, M3DExampleData, scater, SingleCellExperiment, monocle, Seurat, Biobase
 requirements:
diff --git a/recipes/bioconductor-m6aboost/meta.yaml b/recipes/bioconductor-m6aboost/meta.yaml
index d93a008c5c87b..929ee2436e646 100644
--- a/recipes/bioconductor-m6aboost/meta.yaml
+++ b/recipes/bioconductor-m6aboost/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "m6Aboost" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e39557c678ff999ad58cdaa49b01746b
+  md5: 17bd39bcc17e45a0bb22be3e2e15c533
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-m6aboost", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, bookdown, testthat, BiocStyle, BSgenome.Mmusculus.UCSC.mm10
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-adabag
     - r-base
     - r-dplyr
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-adabag
     - r-base
     - r-dplyr
diff --git a/recipes/bioconductor-maaslin2/meta.yaml b/recipes/bioconductor-maaslin2/meta.yaml
index 8842f8735025c..344540a1fbdb1 100644
--- a/recipes/bioconductor-maaslin2/meta.yaml
+++ b/recipes/bioconductor-maaslin2/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.1" %}
+{% set version = "1.16.0" %}
 {% set name = "Maaslin2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7f70167c230537ebff1f132b2a2d46bf
+  md5: 0f92778b2d59935191e2ac58621da8f5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-maaslin2", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat (>= 2.1.0), rmarkdown, markdown
 requirements:
   host:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-metagenomeseq >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-metagenomeseq >=1.43.0,<1.44.0'
     - r-base
     - r-biglm
     - r-car
@@ -46,8 +47,8 @@ requirements:
     - r-tibble
     - r-vegan
   run:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-metagenomeseq >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-metagenomeseq >=1.43.0,<1.44.0'
     - r-base
     - r-biglm
     - r-car
diff --git a/recipes/bioconductor-macarron/meta.yaml b/recipes/bioconductor-macarron/meta.yaml
index 83b29fe0c4d5f..ff3a24d53a9d3 100644
--- a/recipes/bioconductor-macarron/meta.yaml
+++ b/recipes/bioconductor-macarron/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "Macarron" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e2f02b7a780b42d3e9a805aa266ef831
+  md5: 525669e56fccd2be5524315ee6a0eafb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-macarron", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, optparse, testthat (>= 2.1.0), rmarkdown, markdown
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-maaslin2 >=1.14.0,<1.15.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-maaslin2 >=1.16.0,<1.17.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-dynamictreecut
@@ -37,10 +38,10 @@ requirements:
     - r-wgcna
     - r-xml2
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-maaslin2 >=1.14.0,<1.15.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-maaslin2 >=1.16.0,<1.17.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-dynamictreecut
diff --git a/recipes/bioconductor-macat/meta.yaml b/recipes/bioconductor-macat/meta.yaml
index 7be249417b94a..292acdbbc3be8 100644
--- a/recipes/bioconductor-macat/meta.yaml
+++ b/recipes/bioconductor-macat/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.74.0" %}
+{% set version = "1.76.0" %}
 {% set name = "macat" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f26ab5982050f5b89a52fd0ef72ba31e
+  md5: cad43ea7bcc92da57a4e5918581d0143
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-macat", max_pin="x.x") }}'
   noarch: generic
 # Suggests: hgu95av2.db, stjudem
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-macorrplot/meta.yaml b/recipes/bioconductor-macorrplot/meta.yaml
index e08eeb78ddd2d..26005f13bc3d4 100644
--- a/recipes/bioconductor-macorrplot/meta.yaml
+++ b/recipes/bioconductor-macorrplot/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.70.0" %}
+{% set version = "1.72.0" %}
 {% set name = "maCorrPlot" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ad53b8a9ed8797daef76c81929eb25c8
+  md5: 4d4be51b04e4ff3e09aff6643eeed215
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-macorrplot", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-macrophage/meta.yaml b/recipes/bioconductor-macrophage/meta.yaml
index 66381d83d9755..54570f039c559 100644
--- a/recipes/bioconductor-macrophage/meta.yaml
+++ b/recipes/bioconductor-macrophage/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "macrophage" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 94a66e9f410a44d2aa240ebc4cf5c106
+  md5: 5f83cf12d699a285cd228119b1d95cf0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-macrophage", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, markdown
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-macrophage/post-link.sh b/recipes/bioconductor-macrophage/post-link.sh
index e21678c7de8a2..07ecd9410ed61 100644
--- a/recipes/bioconductor-macrophage/post-link.sh
+++ b/recipes/bioconductor-macrophage/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "macrophage-1.16.0"
+installBiocDataPackage.sh "macrophage-1.18.0"
diff --git a/recipes/bioconductor-macsdata/meta.yaml b/recipes/bioconductor-macsdata/meta.yaml
index e698607b03c87..9b6e64baa9952 100644
--- a/recipes/bioconductor-macsdata/meta.yaml
+++ b/recipes/bioconductor-macsdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "MACSdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b5f6edbf074b1f0f5cb5d0d546cdbd0a
+  md5: 1d10f4fe6b20d5c09148b8011fb3183f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-macsdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-macsdata/post-link.sh b/recipes/bioconductor-macsdata/post-link.sh
index eb83aa26c36d6..5b08e731f2aa8 100644
--- a/recipes/bioconductor-macsdata/post-link.sh
+++ b/recipes/bioconductor-macsdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "macsdata-1.8.0"
+installBiocDataPackage.sh "macsdata-1.10.0"
diff --git a/recipes/bioconductor-macsquantifyr/meta.yaml b/recipes/bioconductor-macsquantifyr/meta.yaml
index b7f36ac6f8545..d34ebb85df598 100644
--- a/recipes/bioconductor-macsquantifyr/meta.yaml
+++ b/recipes/bioconductor-macsquantifyr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "MACSQuantifyR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a6252d72b886c783344a123b6b8b324a
+  md5: b0bc5dd3ddff22c28356a8af09704f82
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-macsquantifyr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, R.utils, spelling
 requirements:
diff --git a/recipes/bioconductor-macsr/meta.yaml b/recipes/bioconductor-macsr/meta.yaml
index d550c04c1780c..69879b8a4a240 100644
--- a/recipes/bioconductor-macsr/meta.yaml
+++ b/recipes/bioconductor-macsr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "MACSr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cee42ba19dbef311158effc2860c8ed6
+  md5: bab4dacc8d41a2a47798bc740181f014
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-macsr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, BiocStyle, MACSdata
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-reticulate
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-reticulate
 test:
diff --git a/recipes/bioconductor-made4/meta.yaml b/recipes/bioconductor-made4/meta.yaml
index 931cd5da58c55..924483d6772f8 100644
--- a/recipes/bioconductor-made4/meta.yaml
+++ b/recipes/bioconductor-made4/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.74.0" %}
+{% set version = "1.76.0" %}
 {% set name = "made4" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 6a9e234449f176b7ca00e61605dae1c5
+  md5: ae8a8a420c5f5ebd8a729767baf0a762
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-made4", max_pin="x.x") }}'
   noarch: generic
 # Suggests: affy, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-ade4
     - r-base
     - r-gplots
     - r-rcolorbrewer
     - r-scatterplot3d
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-ade4
     - r-base
     - r-gplots
diff --git a/recipes/bioconductor-madseq/meta.yaml b/recipes/bioconductor-madseq/meta.yaml
index 928d177cace5f..54bf4e92bbf41 100644
--- a/recipes/bioconductor-madseq/meta.yaml
+++ b/recipes/bioconductor-madseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "MADSEQ" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,50 +11,51 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f2e25b4e8cf74ac0ef392ddb4d7214b1
+  md5: c64d51251670d105945b18d12dcd5fec
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-madseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-coda
     - 'r-rjags >=4.6'
     - r-vcfr
     - r-vgam
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-coda
     - 'r-rjags >=4.6'
diff --git a/recipes/bioconductor-mafdb.1kgenomes.phase1.grch38/meta.yaml b/recipes/bioconductor-mafdb.1kgenomes.phase1.grch38/meta.yaml
index be99ecb9bd161..2b6aa7f5d2729 100644
--- a/recipes/bioconductor-mafdb.1kgenomes.phase1.grch38/meta.yaml
+++ b/recipes/bioconductor-mafdb.1kgenomes.phase1.grch38/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.10.0" %}
 {% set name = "MafDb.1Kgenomes.phase1.GRCh38" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,31 +13,32 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: a20471906a41678ce710879e92d2a9dc
 build:
-  number: 8
+  number: 9
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mafdb.1kgenomes.phase1.grch38", max_pin="x.x") }}'
   noarch: generic
 # Suggests: SNPlocs.Hsapiens.dbSNP149.GRCh38
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mafdb.1kgenomes.phase1.hs37d5/meta.yaml b/recipes/bioconductor-mafdb.1kgenomes.phase1.hs37d5/meta.yaml
index 38d35b744a3c0..370e667cdc070 100644
--- a/recipes/bioconductor-mafdb.1kgenomes.phase1.hs37d5/meta.yaml
+++ b/recipes/bioconductor-mafdb.1kgenomes.phase1.hs37d5/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.10.0" %}
 {% set name = "MafDb.1Kgenomes.phase1.hs37d5" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,31 +13,32 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: ece6b758ca0e1a8a307b5cd5829671f4
 build:
-  number: 8
+  number: 9
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mafdb.1kgenomes.phase1.hs37d5", max_pin="x.x") }}'
   noarch: generic
 # Suggests: SNPlocs.Hsapiens.dbSNP144.GRCh37
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mafdb.1kgenomes.phase3.grch38/meta.yaml b/recipes/bioconductor-mafdb.1kgenomes.phase3.grch38/meta.yaml
index 825c493200e85..1db40c302708a 100644
--- a/recipes/bioconductor-mafdb.1kgenomes.phase3.grch38/meta.yaml
+++ b/recipes/bioconductor-mafdb.1kgenomes.phase3.grch38/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.10.0" %}
 {% set name = "MafDb.1Kgenomes.phase3.GRCh38" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,31 +13,32 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: ee57d9cb6a1748932407d20b9bffd8a2
 build:
-  number: 8
+  number: 9
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mafdb.1kgenomes.phase3.grch38", max_pin="x.x") }}'
   noarch: generic
 # Suggests: SNPlocs.Hsapiens.dbSNP149.GRCh38
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mafdb.1kgenomes.phase3.hs37d5/meta.yaml b/recipes/bioconductor-mafdb.1kgenomes.phase3.hs37d5/meta.yaml
index 4de3ba7d81011..e5eef7f32a86d 100644
--- a/recipes/bioconductor-mafdb.1kgenomes.phase3.hs37d5/meta.yaml
+++ b/recipes/bioconductor-mafdb.1kgenomes.phase3.hs37d5/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.10.0" %}
 {% set name = "MafDb.1Kgenomes.phase3.hs37d5" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,31 +13,32 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: ac3cbbf52eb2026f067a4f42c6654555
 build:
-  number: 8
+  number: 9
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mafdb.1kgenomes.phase3.hs37d5", max_pin="x.x") }}'
   noarch: generic
 # Suggests: SNPlocs.Hsapiens.dbSNP144.GRCh37
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mafdb.exac.r1.0.grch38/meta.yaml b/recipes/bioconductor-mafdb.exac.r1.0.grch38/meta.yaml
index b246266b6fe51..a96f0e68085a4 100644
--- a/recipes/bioconductor-mafdb.exac.r1.0.grch38/meta.yaml
+++ b/recipes/bioconductor-mafdb.exac.r1.0.grch38/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.10.0" %}
 {% set name = "MafDb.ExAC.r1.0.GRCh38" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,31 +13,32 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 303332c918996d8cb3e7b7c74d694dd1
 build:
-  number: 8
+  number: 9
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mafdb.exac.r1.0.grch38", max_pin="x.x") }}'
   noarch: generic
 # Suggests: SNPlocs.Hsapiens.dbSNP149.GRCh38
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mafdb.exac.r1.0.hs37d5/meta.yaml b/recipes/bioconductor-mafdb.exac.r1.0.hs37d5/meta.yaml
index dffd2da0880cd..8ee13e3ac78c2 100644
--- a/recipes/bioconductor-mafdb.exac.r1.0.hs37d5/meta.yaml
+++ b/recipes/bioconductor-mafdb.exac.r1.0.hs37d5/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.10.0" %}
 {% set name = "MafDb.ExAC.r1.0.hs37d5" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,31 +13,32 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 4d523554a2b0eb296bada9d33a78eefc
 build:
-  number: 8
+  number: 9
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mafdb.exac.r1.0.hs37d5", max_pin="x.x") }}'
   noarch: generic
 # Suggests: SNPlocs.Hsapiens.dbSNP144.GRCh37
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mafdb.exac.r1.0.nontcga.grch38/meta.yaml b/recipes/bioconductor-mafdb.exac.r1.0.nontcga.grch38/meta.yaml
index 2f42f1af107df..acc4810915163 100644
--- a/recipes/bioconductor-mafdb.exac.r1.0.nontcga.grch38/meta.yaml
+++ b/recipes/bioconductor-mafdb.exac.r1.0.nontcga.grch38/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.10.0" %}
 {% set name = "MafDb.ExAC.r1.0.nonTCGA.GRCh38" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,31 +13,32 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: cf447f59cc8b1cd7ca395fd3fe6e4730
 build:
-  number: 8
+  number: 9
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mafdb.exac.r1.0.nontcga.grch38", max_pin="x.x") }}'
   noarch: generic
 # Suggests: SNPlocs.Hsapiens.dbSNP149.GRCh38
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mafdb.exac.r1.0.nontcga.hs37d5/meta.yaml b/recipes/bioconductor-mafdb.exac.r1.0.nontcga.hs37d5/meta.yaml
index 1a7713ca04870..4e474b21e0b3f 100644
--- a/recipes/bioconductor-mafdb.exac.r1.0.nontcga.hs37d5/meta.yaml
+++ b/recipes/bioconductor-mafdb.exac.r1.0.nontcga.hs37d5/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.10.0" %}
 {% set name = "MafDb.ExAC.r1.0.nonTCGA.hs37d5" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,31 +13,32 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: da3a699e9776b0b769b3bc1e9fb742f0
 build:
-  number: 8
+  number: 9
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mafdb.exac.r1.0.nontcga.hs37d5", max_pin="x.x") }}'
   noarch: generic
 # Suggests: SNPlocs.Hsapiens.dbSNP144.GRCh37
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mafdb.gnomad.r2.1.grch38/meta.yaml b/recipes/bioconductor-mafdb.gnomad.r2.1.grch38/meta.yaml
index 357433b83fe2e..6a2aeb3790b7b 100644
--- a/recipes/bioconductor-mafdb.gnomad.r2.1.grch38/meta.yaml
+++ b/recipes/bioconductor-mafdb.gnomad.r2.1.grch38/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.10.0" %}
 {% set name = "MafDb.gnomAD.r2.1.GRCh38" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,31 +13,32 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 0e842b24476aeb834f57f9302a36ea18
 build:
-  number: 7
+  number: 5
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mafdb.gnomad.r2.1.grch38", max_pin="x.x") }}'
   noarch: generic
 # Suggests: SNPlocs.Hsapiens.dbSNP149.GRCh38
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mafdb.gnomad.r2.1.hs37d5/meta.yaml b/recipes/bioconductor-mafdb.gnomad.r2.1.hs37d5/meta.yaml
index c18f6c455ea03..e55b30222e669 100644
--- a/recipes/bioconductor-mafdb.gnomad.r2.1.hs37d5/meta.yaml
+++ b/recipes/bioconductor-mafdb.gnomad.r2.1.hs37d5/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.10.0" %}
 {% set name = "MafDb.gnomAD.r2.1.hs37d5" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,31 +13,32 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 12221c461930ae1ecfe925943a619d56
 build:
-  number: 9
+  number: 7
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mafdb.gnomad.r2.1.hs37d5", max_pin="x.x") }}'
   noarch: generic
 # Suggests: SNPlocs.Hsapiens.dbSNP144.GRCh37
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mafdb.gnomadex.r2.1.grch38/meta.yaml b/recipes/bioconductor-mafdb.gnomadex.r2.1.grch38/meta.yaml
index 306a937c8d05c..0a1f9568b4c16 100644
--- a/recipes/bioconductor-mafdb.gnomadex.r2.1.grch38/meta.yaml
+++ b/recipes/bioconductor-mafdb.gnomadex.r2.1.grch38/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.10.0" %}
 {% set name = "MafDb.gnomADex.r2.1.GRCh38" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,31 +13,32 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: a0ab5b74997669fabb8aecfd9ef7f767
 build:
-  number: 8
+  number: 9
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mafdb.gnomadex.r2.1.grch38", max_pin="x.x") }}'
   noarch: generic
 # Suggests: SNPlocs.Hsapiens.dbSNP149.GRCh38
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mafdb.gnomadex.r2.1.hs37d5/meta.yaml b/recipes/bioconductor-mafdb.gnomadex.r2.1.hs37d5/meta.yaml
index f01decacb0e1e..9c24dd865ddc8 100644
--- a/recipes/bioconductor-mafdb.gnomadex.r2.1.hs37d5/meta.yaml
+++ b/recipes/bioconductor-mafdb.gnomadex.r2.1.hs37d5/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.10.0" %}
 {% set name = "MafDb.gnomADex.r2.1.hs37d5" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,31 +13,32 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 6ca4d742571687a13906d99cea2dbf1f
 build:
-  number: 8
+  number: 9
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mafdb.gnomadex.r2.1.hs37d5", max_pin="x.x") }}'
   noarch: generic
 # Suggests: SNPlocs.Hsapiens.dbSNP144.GRCh37
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mafdb.topmed.freeze5.hg19/meta.yaml b/recipes/bioconductor-mafdb.topmed.freeze5.hg19/meta.yaml
index 2c94cbac23ecb..06fdf2b8407e8 100644
--- a/recipes/bioconductor-mafdb.topmed.freeze5.hg19/meta.yaml
+++ b/recipes/bioconductor-mafdb.topmed.freeze5.hg19/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.10.0" %}
 {% set name = "MafDb.TOPMed.freeze5.hg19" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,31 +13,32 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 7fdb58eb69187ade189689da58ca6266
 build:
-  number: 8
+  number: 9
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mafdb.topmed.freeze5.hg19", max_pin="x.x") }}'
   noarch: generic
 # Suggests: SNPlocs.Hsapiens.dbSNP144.GRCh37
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mafdb.topmed.freeze5.hg38/meta.yaml b/recipes/bioconductor-mafdb.topmed.freeze5.hg38/meta.yaml
index b976d65bd270b..485f8cd9f87c6 100644
--- a/recipes/bioconductor-mafdb.topmed.freeze5.hg38/meta.yaml
+++ b/recipes/bioconductor-mafdb.topmed.freeze5.hg38/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.10.0" %}
 {% set name = "MafDb.TOPMed.freeze5.hg38" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,31 +13,32 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: a3355623fde26b83dfd346a32829f073
 build:
-  number: 8
+  number: 9
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mafdb.topmed.freeze5.hg38", max_pin="x.x") }}'
   noarch: generic
 # Suggests: SNPlocs.Hsapiens.dbSNP149.GRCh38
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mafh5.gnomad.v3.1.1.grch38/meta.yaml b/recipes/bioconductor-mafh5.gnomad.v3.1.1.grch38/meta.yaml
index 9a2a78841bcb4..a0ae0f400cc7a 100644
--- a/recipes/bioconductor-mafh5.gnomad.v3.1.1.grch38/meta.yaml
+++ b/recipes/bioconductor-mafh5.gnomad.v3.1.1.grch38/meta.yaml
@@ -41,7 +41,7 @@ requirements:
     - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - bioconductor-data-packages >=20230706
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mafh5.gnomad.v3.1.2.grch38/meta.yaml b/recipes/bioconductor-mafh5.gnomad.v3.1.2.grch38/meta.yaml
index 22bb4faead093..906283e9f2b28 100644
--- a/recipes/bioconductor-mafh5.gnomad.v3.1.2.grch38/meta.yaml
+++ b/recipes/bioconductor-mafh5.gnomad.v3.1.2.grch38/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.15.0" %}
 {% set name = "MafH5.gnomAD.v3.1.2.GRCh38" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,35 +13,36 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: e9c85173866caf998cf1af7dd35aac0b
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mafh5.gnomad.v3.1.2.grch38", max_pin="x.x") }}'
   noarch: generic
 # Suggests: SNPlocs.Hsapiens.dbSNP149.GRCh38
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-maftools/meta.yaml b/recipes/bioconductor-maftools/meta.yaml
index 86123ebc13b62..ef10236192193 100644
--- a/recipes/bioconductor-maftools/meta.yaml
+++ b/recipes/bioconductor-maftools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.16.0" %}
+{% set version = "2.18.0" %}
 {% set name = "maftools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: b54e39e3b9f5f9123ce2755efdd2cc92
+  md5: 3dadc2b7f6f1693ae23a41b61f541db4
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-maftools", max_pin="x.x") }}'
 # Suggests: berryFunctions, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19, GenomicRanges, IRanges, knitr, mclust, MultiAssayExperiment, NMF, R.utils, RaggedExperiment, rmarkdown, S4Vectors, pheatmap, curl
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-data.table
     - r-rcolorbrewer
@@ -31,9 +32,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-data.table
     - r-rcolorbrewer
@@ -51,6 +52,11 @@ about:
   description: 'Analyze and visualize Mutation Annotation Format (MAF) files from large scale sequencing studies. This package provides various functions to perform most commonly used analyses in cancer genomics and to create feature rich customizable visualzations with minimal effort.'
   license_file: LICENSE
 extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
+    - usegalaxy-eu:{{ name|lower }}
   parent_recipe:
     name: bioconductor-maftools
     path: recipes/bioconductor-maftools
diff --git a/recipes/bioconductor-magar/meta.yaml b/recipes/bioconductor-magar/meta.yaml
index 37aa9da557ce8..e87b79b60d97d 100644
--- a/recipes/bioconductor-magar/meta.yaml
+++ b/recipes/bioconductor-magar/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "MAGAR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 17a56f640a48d9270666b77554644c7b
+  md5: 27ccb3bf6acaabe9b9d29b52f9d98213
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-magar", max_pin="x.x") }}'
   noarch: generic
 # Suggests: gridExtra, VennDiagram, qqman, LOLA, RUnit, rmutil, rmarkdown, JASPAR2018, TFBSTools, seqLogo, knitr, devtools, BiocGenerics, BiocManager
 requirements:
   host:
-    - 'bioconductor-crlmm >=1.58.0,<1.59.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-rnbeads >=2.18.0,<2.19.0'
-    - 'bioconductor-rnbeads.hg19 >=1.32.0,<1.33.0'
-    - 'bioconductor-snpstats >=1.50.0,<1.51.0'
+    - 'bioconductor-crlmm >=1.60.0,<1.61.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-rnbeads >=2.20.0,<2.21.0'
+    - 'bioconductor-rnbeads.hg19 >=1.34.0,<1.35.0'
+    - 'bioconductor-snpstats >=1.52.0,<1.53.0'
     - r-argparse
     - r-base
     - r-bigstatsr
@@ -40,12 +41,12 @@ requirements:
     - r-rjson
     - r-upsetr
   run:
-    - 'bioconductor-crlmm >=1.58.0,<1.59.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-rnbeads >=2.18.0,<2.19.0'
-    - 'bioconductor-rnbeads.hg19 >=1.32.0,<1.33.0'
-    - 'bioconductor-snpstats >=1.50.0,<1.51.0'
+    - 'bioconductor-crlmm >=1.60.0,<1.61.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-rnbeads >=2.20.0,<2.21.0'
+    - 'bioconductor-rnbeads.hg19 >=1.34.0,<1.35.0'
+    - 'bioconductor-snpstats >=1.52.0,<1.53.0'
     - r-argparse
     - r-base
     - r-bigstatsr
diff --git a/recipes/bioconductor-mageckflute/meta.yaml b/recipes/bioconductor-mageckflute/meta.yaml
index a7b7a298d0692..3a485e0d36c7c 100644
--- a/recipes/bioconductor-mageckflute/meta.yaml
+++ b/recipes/bioconductor-mageckflute/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.4.0" %}
+{% set version = "2.6.0" %}
 {% set name = "MAGeCKFlute" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3471b341d90f59e6ef5c9ae15ed4e6d0
+  md5: 09a3c95fe59a959ce069f5ad56e75276
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mageckflute", max_pin="x.x") }}'
   noarch: generic
 # Suggests: biomaRt, BiocStyle, dendextend, graphics, knitr, pheatmap, png, scales, sva, BiocManager
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-depmap >=1.14.0,<1.15.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-enrichplot >=1.20.0,<1.21.0'
-    - 'bioconductor-pathview >=1.40.0,<1.41.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-depmap >=1.16.0,<1.17.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-enrichplot >=1.22.0,<1.23.0'
+    - 'bioconductor-pathview >=1.42.0,<1.43.0'
     - r-base
     - r-ggplot2
     - r-ggrepel
@@ -34,12 +35,12 @@ requirements:
     - r-msigdbr
     - r-reshape2
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-depmap >=1.14.0,<1.15.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-enrichplot >=1.20.0,<1.21.0'
-    - 'bioconductor-pathview >=1.40.0,<1.41.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-depmap >=1.16.0,<1.17.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-enrichplot >=1.22.0,<1.23.0'
+    - 'bioconductor-pathview >=1.42.0,<1.43.0'
     - r-base
     - r-ggplot2
     - r-ggrepel
diff --git a/recipes/bioconductor-magpie/meta.yaml b/recipes/bioconductor-magpie/meta.yaml
index f600033cb56df..9b8edec7aca44 100644
--- a/recipes/bioconductor-magpie/meta.yaml
+++ b/recipes/bioconductor-magpie/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "magpie" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 52ffa8a06a288f5a51ea9337aa99733e
+  md5: 019cf9b038353b96851fe65fa55f3d08
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-magpie", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, kableExtra, RUnit, TBX20BamSubset, BiocGenerics, BiocStyle
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-tress >=1.6.0,<1.7.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-tress >=1.8.0,<1.9.0'
     - r-aod
     - r-base
     - r-matrix
@@ -39,16 +40,16 @@ requirements:
     - r-rcolorbrewer
     - r-reshape2
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-tress >=1.6.0,<1.7.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-tress >=1.8.0,<1.9.0'
     - r-aod
     - r-base
     - r-matrix
diff --git a/recipes/bioconductor-magrene/meta.yaml b/recipes/bioconductor-magrene/meta.yaml
index 062f1bacc7482..54cc0f1df97ec 100644
--- a/recipes/bioconductor-magrene/meta.yaml
+++ b/recipes/bioconductor-magrene/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "magrene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: df1a679707bfc6783f48a7489c8e0c8b
+  md5: 7d02392d3081830451c4fae90ed50177
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-magrene", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, covr, knitr, rmarkdown, ggplot2, sessioninfo, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-mai/meta.yaml b/recipes/bioconductor-mai/meta.yaml
index 4f88bbb8b24e2..e1039188b4612 100644
--- a/recipes/bioconductor-mai/meta.yaml
+++ b/recipes/bioconductor-mai/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "MAI" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 990f4687d2c061d10aea5f5d78795328
+  md5: ac8dbd997d58657f8ed6b64f5cdee7a9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mai", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-caret
     - r-doparallel
@@ -34,9 +35,9 @@ requirements:
     - r-missforest
     - r-tidyverse
   run:
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-caret
     - r-doparallel
diff --git a/recipes/bioconductor-maigespack/meta.yaml b/recipes/bioconductor-maigespack/meta.yaml
index fdd8923643d43..035f65069b988 100644
--- a/recipes/bioconductor-maigespack/meta.yaml
+++ b/recipes/bioconductor-maigespack/meta.yaml
@@ -13,25 +13,25 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 118a586912fcef7e97526e4b2d142729
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
 # Suggests: amap, annotate, class, e1071, MASS, multtest, OLIN, R2HTML, rgl, som
 requirements:
   host:
-    - 'bioconductor-convert >=1.76.0,<1.77.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-convert >=1.78.0,<1.79.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-limma >=3.58.1,<3.59.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-convert >=1.76.0,<1.77.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-convert >=1.78.0,<1.79.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-limma >=3.58.1,<3.59.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
   build:
     - {{ compiler('c') }}
@@ -41,11 +41,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'GPL (>= 2)'
+  license: 'GPL-3.0-or-later'
   summary: 'Functions to handle cDNA microarray data, including several methods of data analysis'
   description: 'This package uses functions of various other packages together with other functions in a coordinated way to handle and analyse cDNA microarray data'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:maigespack
     - doi:10.1038/nmeth.3252
diff --git a/recipes/bioconductor-mait/meta.yaml b/recipes/bioconductor-mait/meta.yaml
index 5351c8eb39d02..695444af43443 100644
--- a/recipes/bioconductor-mait/meta.yaml
+++ b/recipes/bioconductor-mait/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "MAIT" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 37e3772801390dcf734e87c62b98471b
+  md5: f32e9e8e908202848634b26a5ece4d8f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mait", max_pin="x.x") }}'
 # Suggests: faahKO
 requirements:
   host:
-    - 'bioconductor-camera >=1.56.0,<1.57.0'
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-camera >=1.58.0,<1.59.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-agricolae
     - r-base
     - r-caret
@@ -35,8 +36,8 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-camera >=1.56.0,<1.57.0'
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-camera >=1.58.0,<1.59.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-agricolae
     - r-base
     - r-caret
diff --git a/recipes/bioconductor-maizecdf/meta.yaml b/recipes/bioconductor-maizecdf/meta.yaml
index 0e8d7a5d7b90b..d836b954f6903 100644
--- a/recipes/bioconductor-maizecdf/meta.yaml
+++ b/recipes/bioconductor-maizecdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "maizecdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: f9dec9e46688d96daf1e07d4e815afb4
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-maizecdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-maizeprobe/meta.yaml b/recipes/bioconductor-maizeprobe/meta.yaml
index 5506099f48285..3c8eb2bfe896a 100644
--- a/recipes/bioconductor-maizeprobe/meta.yaml
+++ b/recipes/bioconductor-maizeprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "maizeprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: ef7ba47de2346b3552621263399c05d1
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-maizeprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-makecdfenv/meta.yaml b/recipes/bioconductor-makecdfenv/meta.yaml
index 1fc6c31d0e941..2271860f8f2bc 100644
--- a/recipes/bioconductor-makecdfenv/meta.yaml
+++ b/recipes/bioconductor-makecdfenv/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.76.0" %}
+{% set version = "1.78.0" %}
 {% set name = "makecdfenv" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 4455ab7ea0c109310c0ef051acc9bf44
+  md5: b5c8877fd5b09fbb4d3656490fa7eb64
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-makecdfenv", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-affyio >=1.70.0,<1.71.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-affyio >=1.72.0,<1.73.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-affyio >=1.70.0,<1.71.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-affyio >=1.72.0,<1.73.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-malaria.db0/meta.yaml b/recipes/bioconductor-malaria.db0/meta.yaml
index b0d07125ccc9e..ddff973edf6fe 100644
--- a/recipes/bioconductor-malaria.db0/meta.yaml
+++ b/recipes/bioconductor-malaria.db0/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "malaria.db0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: b8064752fa55d249e89e1c94db04b434
+  md5: 6f71b4ac69ae5237f3f5e1337d5073d7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-malaria.db0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-malaria.db0/post-link.sh b/recipes/bioconductor-malaria.db0/post-link.sh
index aa5c1fbc028d9..723835d617cfb 100644
--- a/recipes/bioconductor-malaria.db0/post-link.sh
+++ b/recipes/bioconductor-malaria.db0/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "malaria.db0-3.17.0"
+installBiocDataPackage.sh "malaria.db0-3.18.0"
diff --git a/recipes/bioconductor-mammaprintdata/meta.yaml b/recipes/bioconductor-mammaprintdata/meta.yaml
index 9f531c2391d37..0ad3e9e516f38 100644
--- a/recipes/bioconductor-mammaprintdata/meta.yaml
+++ b/recipes/bioconductor-mammaprintdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "mammaPrintData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cfd6915395a6a2adeebac6854f3359c9
+  md5: 08b3249a36d5f165a933bfab5eb05a2a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mammaprintdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biobase, readxl, limma
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mammaprintdata/post-link.sh b/recipes/bioconductor-mammaprintdata/post-link.sh
index b1a54fcddb5fa..ee220d325a5a0 100644
--- a/recipes/bioconductor-mammaprintdata/post-link.sh
+++ b/recipes/bioconductor-mammaprintdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "mammaprintdata-1.36.0"
+installBiocDataPackage.sh "mammaprintdata-1.38.0"
diff --git a/recipes/bioconductor-manor/meta.yaml b/recipes/bioconductor-manor/meta.yaml
index d21c6e9c6b331..0b48ee35d2fea 100644
--- a/recipes/bioconductor-manor/meta.yaml
+++ b/recipes/bioconductor-manor/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "MANOR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fff1198e00300c326aec0b10f1243e7d
+  md5: a2d915a1904045acbe371b10102c8512
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-manor", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, bookdown
 requirements:
   host:
-    - 'bioconductor-glad >=2.64.0,<2.65.0'
+    - 'bioconductor-glad >=2.66.0,<2.67.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-glad >=2.64.0,<2.65.0'
+    - 'bioconductor-glad >=2.66.0,<2.67.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-mantelcorr/meta.yaml b/recipes/bioconductor-mantelcorr/meta.yaml
index 20ab63e20a1ab..5fe60a98bbc56 100644
--- a/recipes/bioconductor-mantelcorr/meta.yaml
+++ b/recipes/bioconductor-mantelcorr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.70.0" %}
+{% set version = "1.72.0" %}
 {% set name = "MantelCorr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3f20807432d60061faa0e788a6e98c84
+  md5: 7ef5ee0a329a4cf218c340e9289fea32
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mantelcorr", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-mapkldata/meta.yaml b/recipes/bioconductor-mapkldata/meta.yaml
index 50ea4875e03e4..8669aaad8b16f 100644
--- a/recipes/bioconductor-mapkldata/meta.yaml
+++ b/recipes/bioconductor-mapkldata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "mAPKLData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6d1b511c7be1a423450a153fc118e7cb
+  md5: ce6399a1c853cb4e78de226347c3dc5d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mapkldata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biobase
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mapkldata/post-link.sh b/recipes/bioconductor-mapkldata/post-link.sh
index d7a4cb29b019b..5c4a6533b73dc 100644
--- a/recipes/bioconductor-mapkldata/post-link.sh
+++ b/recipes/bioconductor-mapkldata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "mapkldata-1.32.0"
+installBiocDataPackage.sh "mapkldata-1.34.0"
diff --git a/recipes/bioconductor-mapredictdsc/meta.yaml b/recipes/bioconductor-mapredictdsc/meta.yaml
index 98832a70410c7..88e0feda89173 100644
--- a/recipes/bioconductor-mapredictdsc/meta.yaml
+++ b/recipes/bioconductor-mapredictdsc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "maPredictDSC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6478a774bba2457523926418168a45f2
+  md5: b2a491a7c799fcc0efcaed0b3067aa66
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mapredictdsc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: parallel
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-gcrma >=2.72.0,<2.73.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-gcrma >=2.74.0,<2.75.0'
     - 'bioconductor-hgu133plus2.db >=3.13.0,<3.14.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-lungcanceracvssccgeo >=1.36.0,<1.37.0'
-    - 'bioconductor-roc >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-lungcanceracvssccgeo >=1.38.0,<1.39.0'
+    - 'bioconductor-roc >=1.78.0,<1.79.0'
     - r-base
     - r-caret
     - r-class
@@ -35,13 +36,13 @@ requirements:
     - r-mass
     - r-rocr
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-gcrma >=2.72.0,<2.73.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-gcrma >=2.74.0,<2.75.0'
     - 'bioconductor-hgu133plus2.db >=3.13.0,<3.14.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-lungcanceracvssccgeo >=1.36.0,<1.37.0'
-    - 'bioconductor-roc >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-lungcanceracvssccgeo >=1.38.0,<1.39.0'
+    - 'bioconductor-roc >=1.78.0,<1.79.0'
     - r-base
     - r-caret
     - r-class
diff --git a/recipes/bioconductor-mapscape/meta.yaml b/recipes/bioconductor-mapscape/meta.yaml
index 68bec68fe92d6..d0af3af41f6ed 100644
--- a/recipes/bioconductor-mapscape/meta.yaml
+++ b/recipes/bioconductor-mapscape/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "mapscape" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: fb51de837561beef21ffa11f723654f9
+  md5: dc197aa43e86dc49fef0d85d2ead252c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mapscape", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
diff --git a/recipes/bioconductor-maqcexpression4plex/meta.yaml b/recipes/bioconductor-maqcexpression4plex/meta.yaml
index 53bdea96b4749..58945237d3ad0 100644
--- a/recipes/bioconductor-maqcexpression4plex/meta.yaml
+++ b/recipes/bioconductor-maqcexpression4plex/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.44.0" %}
+{% set version = "1.46.0" %}
 {% set name = "maqcExpression4plex" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 761e3e1f398262f4c0cac3cd31979fc7
+  md5: 8312b7fbcba763a33630effb8c3b5f10
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-maqcexpression4plex", max_pin="x.x") }}'
   noarch: generic
 # Suggests: oligo, pdInfoBuilder
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-maqcexpression4plex/post-link.sh b/recipes/bioconductor-maqcexpression4plex/post-link.sh
index fc90732c5d1fd..8a868702a088b 100644
--- a/recipes/bioconductor-maqcexpression4plex/post-link.sh
+++ b/recipes/bioconductor-maqcexpression4plex/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "maqcexpression4plex-1.44.0"
+installBiocDataPackage.sh "maqcexpression4plex-1.46.0"
diff --git a/recipes/bioconductor-maqcsubset/meta.yaml b/recipes/bioconductor-maqcsubset/meta.yaml
index 8f3a5ded5021c..4f5f9467649c3 100644
--- a/recipes/bioconductor-maqcsubset/meta.yaml
+++ b/recipes/bioconductor-maqcsubset/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "MAQCsubset" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: eb3ea654ce6aa3db50c7a39c6d8cab28
+  md5: 5757c11a1af2150b8fd17c3a8b8b0c0c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-maqcsubset", max_pin="x.x") }}'
   noarch: generic
 # Suggests: genefilter, codelink
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-maqcsubset/post-link.sh b/recipes/bioconductor-maqcsubset/post-link.sh
index 270d828522f4e..2e61448c5748c 100644
--- a/recipes/bioconductor-maqcsubset/post-link.sh
+++ b/recipes/bioconductor-maqcsubset/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "maqcsubset-1.38.0"
+installBiocDataPackage.sh "maqcsubset-1.40.0"
diff --git a/recipes/bioconductor-maqcsubsetilm/meta.yaml b/recipes/bioconductor-maqcsubsetilm/meta.yaml
index c1926f58f1dd3..8c1a687bc5053 100644
--- a/recipes/bioconductor-maqcsubsetilm/meta.yaml
+++ b/recipes/bioconductor-maqcsubsetilm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "MAQCsubsetILM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4aaeddbd20f73e3f84dc630e9c02e219
+  md5: 1c975db69a86cc80e99c5245998ee255
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-maqcsubsetilm", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-maqcsubsetilm/post-link.sh b/recipes/bioconductor-maqcsubsetilm/post-link.sh
index 76cbbf1ec8f5a..20355734efcd0 100644
--- a/recipes/bioconductor-maqcsubsetilm/post-link.sh
+++ b/recipes/bioconductor-maqcsubsetilm/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "maqcsubsetilm-1.38.0"
+installBiocDataPackage.sh "maqcsubsetilm-1.40.0"
diff --git a/recipes/bioconductor-mariner/meta.yaml b/recipes/bioconductor-mariner/meta.yaml
index 9e1ea1bdda43a..faa6324855fb2 100644
--- a/recipes/bioconductor-mariner/meta.yaml
+++ b/recipes/bioconductor-mariner/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "mariner" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 8e7440b7a29afb6f325512a65653b3b9
+  md5: 6ed30878d03b8a17e8e7c4ee17218893
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mariner", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat (>= 3.0.0), dplyr, rmarkdown, ExperimentHub, marinerData
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-plotgardener >=1.6.0,<1.7.0'
-    - 'bioconductor-plyranges >=1.20.0,<1.21.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-plotgardener >=1.8.0,<1.9.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-abind
     - r-assertthat
     - r-base
@@ -49,19 +50,19 @@ requirements:
     - r-rlang
     - 'r-strawr >=0.0.91'
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-plotgardener >=1.6.0,<1.7.0'
-    - 'bioconductor-plyranges >=1.20.0,<1.21.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-plotgardener >=1.8.0,<1.9.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-abind
     - r-assertthat
     - r-base
diff --git a/recipes/bioconductor-marinerdata/meta.yaml b/recipes/bioconductor-marinerdata/meta.yaml
index c1961f6c744f6..1f58a93bd6ba5 100644
--- a/recipes/bioconductor-marinerdata/meta.yaml
+++ b/recipes/bioconductor-marinerdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "marinerData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 88417144bbc4ae0164445918ce73376d
+  md5: 7875113ebb6baaaed6eb6fc762ba92ca
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-marinerdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, ExperimentHubData, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-marinerdata/post-link.sh b/recipes/bioconductor-marinerdata/post-link.sh
index ddb0b82fcea0c..a1f63c4a9a63d 100644
--- a/recipes/bioconductor-marinerdata/post-link.sh
+++ b/recipes/bioconductor-marinerdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "marinerdata-1.0.0"
+installBiocDataPackage.sh "marinerdata-1.2.0"
diff --git a/recipes/bioconductor-marr/meta.yaml b/recipes/bioconductor-marr/meta.yaml
index 5f05cd664dbf4..cb6168d37a922 100644
--- a/recipes/bioconductor-marr/meta.yaml
+++ b/recipes/bioconductor-marr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "marr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 5034df18a1cb3deb55978997508feea8
+  md5: 3b839d77065c34ddb5f5c2a8eee277ea
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-marr", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, BiocStyle, testthat, covr
 requirements:
   host:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -31,8 +32,8 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-marray/meta.yaml b/recipes/bioconductor-marray/meta.yaml
index b0c13d578a065..d4701902cbd9a 100644
--- a/recipes/bioconductor-marray/meta.yaml
+++ b/recipes/bioconductor-marray/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.78.0" %}
+{% set version = "1.80.0" %}
 {% set name = "marray" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 3dc5ce3be06cf55e1e4c95f77f2acce0
+  md5: 569b373e346d36964430d249d075cf07
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-marray", max_pin="x.x") }}'
   noarch: generic
 # Suggests: tkWidgets
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-martini/meta.yaml b/recipes/bioconductor-martini/meta.yaml
index a5c17f5984402..59fd53e07ccc9 100644
--- a/recipes/bioconductor-martini/meta.yaml
+++ b/recipes/bioconductor-martini/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "martini" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,16 +11,17 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 400390c31bdbd7cc031fdf235683eb7d
+  md5: 85e3366daf7ac24c0f50261fafe8b274
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-martini", max_pin="x.x") }}'
 # Suggests: biomaRt (>= 2.34.1), circlize (>= 0.4.11), STRINGdb (>= 2.2.0), httr (>= 1.2.1), IRanges (>= 2.8.2), S4Vectors (>= 0.12.2), knitr, testthat, readr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-snpstats >=1.50.0,<1.51.0'
+    - 'bioconductor-snpstats >=1.52.0,<1.53.0'
     - r-base
     - 'r-igraph >=1.0.1'
     - r-matrix
@@ -30,7 +31,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-snpstats >=1.50.0,<1.51.0'
+    - 'bioconductor-snpstats >=1.52.0,<1.53.0'
     - r-base
     - 'r-igraph >=1.0.1'
     - r-matrix
@@ -46,8 +47,15 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-3
+  license: GPL-3.0-only
   summary: 'GWAS Incorporating Networks'
   description: 'martini deals with the low power inherent to GWAS studies by using prior knowledge represented as a network. SNPs are the vertices of the network, and the edges represent biological relationships between them (genomic adjacency, belonging to the same gene, physical interaction between protein products). The network is scanned using SConES, which looks for groups of SNPs maximally associated with the phenotype, that form a close subnetwork.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
+    - usegalaxy-eu:{{ name|lower }}
+
diff --git a/recipes/bioconductor-maser/meta.yaml b/recipes/bioconductor-maser/meta.yaml
index 831d0c6a9612b..984e5476ff7d0 100644
--- a/recipes/bioconductor-maser/meta.yaml
+++ b/recipes/bioconductor-maser/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "maser" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 052306b8282c5b311639dfa2d5ef7045
+  md5: 43be20847a05369476ccdb91cdd6ad4e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-maser", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, BiocStyle, AnnotationHub
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -34,12 +35,12 @@ requirements:
     - r-ggplot2
     - r-reshape2
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-data.table
     - r-dplyr
diff --git a/recipes/bioconductor-masigpro/meta.yaml b/recipes/bioconductor-masigpro/meta.yaml
index f932961901201..92ad4b2047ab2 100644
--- a/recipes/bioconductor-masigpro/meta.yaml
+++ b/recipes/bioconductor-masigpro/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "maSigPro" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 712ae9a5e65afe3af9adb7b6b0701938
+  md5: ab91a6a10122c6d1f28fee40be32c2b8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-masigpro", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-mass
     - r-mclust
     - r-venn
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-mass
     - r-mclust
diff --git a/recipes/bioconductor-maskbad/meta.yaml b/recipes/bioconductor-maskbad/meta.yaml
index f0c5d696b39a6..e7cfd10db732a 100644
--- a/recipes/bioconductor-maskbad/meta.yaml
+++ b/recipes/bioconductor-maskbad/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.44.0" %}
+{% set version = "1.46.0" %}
 {% set name = "maskBAD" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b331548e7096b6b3be7c7dec18ef8326
+  md5: a5fc8482a4370f32fde7bc2b3e302c77
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-maskbad", max_pin="x.x") }}'
   noarch: generic
 # Suggests: hgu95av2probe, hgu95av2cdf
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-gcrma >=2.72.0,<2.73.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-gcrma >=2.74.0,<2.75.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-gcrma >=2.72.0,<2.73.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-gcrma >=2.74.0,<2.75.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-massarray/meta.yaml b/recipes/bioconductor-massarray/meta.yaml
index 3d6d46c569432..0afae7ac8c0e7 100644
--- a/recipes/bioconductor-massarray/meta.yaml
+++ b/recipes/bioconductor-massarray/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.52.0" %}
+{% set version = "1.54.0" %}
 {% set name = "MassArray" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 10baaf1ef33e244057e4f36061412c28
+  md5: 028fea456ce2e5b3820ad6dc0d1989c1
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-massarray", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-massir/meta.yaml b/recipes/bioconductor-massir/meta.yaml
index 9e0e03f5fb577..dbf9731aa509d 100644
--- a/recipes/bioconductor-massir/meta.yaml
+++ b/recipes/bioconductor-massir/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "massiR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 486b707284622849c02988e6cd5b82f9
+  md5: f2dda0fb78f776b416af77100e902b55
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-massir", max_pin="x.x") }}'
   noarch: generic
 # Suggests: biomaRt, RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-cluster
     - r-diptest
     - r-gplots
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-cluster
     - r-diptest
diff --git a/recipes/bioconductor-massspecwavelet/meta.yaml b/recipes/bioconductor-massspecwavelet/meta.yaml
index 96df2a5052c6d..f8ad82d1d808a 100644
--- a/recipes/bioconductor-massspecwavelet/meta.yaml
+++ b/recipes/bioconductor-massspecwavelet/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.66.0" %}
+{% set version = "1.68.0" %}
 {% set name = "MassSpecWavelet" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9ebb91cab5b3607ac2c59cd73e6e06c9
+  md5: 387636ea7c674fe339c56a8af3458f8a
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-massspecwavelet", max_pin="x.x") }}'
 # Suggests: signal, waveslim, BiocStyle, knitr, rmarkdown, RUnit, bench
 requirements:
   host:
@@ -38,6 +39,8 @@ about:
   description: 'Peak Detection in Mass Spectrometry data is one of the important preprocessing steps. The performance of peak detection affects subsequent processes, including protein identification, profile alignment and biomarker identification. Using Continuous Wavelet Transform (CWT), this package provides a reliable algorithm for peak detection that does not require any type of smoothing or previous baseline correction method, providing more consistent results for different spectra. See <doi:10.1093/bioinformatics/btl355} for further details.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/LGPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:massspecwavelet
   parent_recipe:
diff --git a/recipes/bioconductor-mast/meta.yaml b/recipes/bioconductor-mast/meta.yaml
index 029f53b7473ce..1dd0a3e36a434 100644
--- a/recipes/bioconductor-mast/meta.yaml
+++ b/recipes/bioconductor-mast/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "MAST" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9442a26a462745f9c9f05cdb036cc1df
+  md5: 5b2d5c6a33243cdf9c2e4440ba4bf1da
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mast", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, lme4(>= 1.0), blme, roxygen2(> 6.0.0), numDeriv, car, gdata, lattice, GGally, GSEABase, NMF, TxDb.Hsapiens.UCSC.hg19.knownGene, rsvd, limma, RColorBrewer, BiocStyle, scater, DelayedArray, HDF5Array, zinbwave, dplyr
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-abind
     - r-base
     - r-data.table
@@ -36,11 +37,11 @@ requirements:
     - r-reshape2
     - r-stringr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-abind
     - r-base
     - r-data.table
diff --git a/recipes/bioconductor-mastr/meta.yaml b/recipes/bioconductor-mastr/meta.yaml
index 812d4bfc3fa77..d13e915d95790 100644
--- a/recipes/bioconductor-mastr/meta.yaml
+++ b/recipes/bioconductor-mastr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "mastR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ce292ab282a5db42a4c0975bfd326640
+  md5: be4cab3fb29097cb5dd34ee7ba1ce228
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mastr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocManager, BiocStyle, BisqueRNA, clusterProfiler, ComplexHeatmap, depmap, enrichplot, ggrepel, ggvenn, gridExtra, jsonlite, knitr, rmarkdown, RobustRankAggreg, rvest, scuttle, singscore, splatter, testthat (>= 3.0.0), UpSetR
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-msigdb >=1.8.0,<1.9.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-msigdb >=1.10.0,<1.11.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -39,15 +40,15 @@ requirements:
     - r-seuratobject
     - r-tidyr
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-msigdb >=1.8.0,<1.9.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-msigdb >=1.10.0,<1.11.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-matchbox/meta.yaml b/recipes/bioconductor-matchbox/meta.yaml
index 987d19e540765..0cb5c684cdaaa 100644
--- a/recipes/bioconductor-matchbox/meta.yaml
+++ b/recipes/bioconductor-matchbox/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "matchBox" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e86b03f10e018b4c355da5ff1f8b17d0
+  md5: b6e4b10ee38f433d1bce146a089a44ec
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-matchbox", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-matrixgenerics/meta.yaml b/recipes/bioconductor-matrixgenerics/meta.yaml
index 51d5c467ae836..8438fa63d3154 100644
--- a/recipes/bioconductor-matrixgenerics/meta.yaml
+++ b/recipes/bioconductor-matrixgenerics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.2" %}
+{% set version = "1.14.0" %}
 {% set name = "MatrixGenerics" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 91a6ccc193831c76b3806c41b3ceed6d
+  md5: 18c3a5cc993ca5c2ad48dde1813105e6
 build:
-  number: 0
+  number: 3
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-matrixgenerics", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Matrix, sparseMatrixStats, SparseArray, DelayedArray, DelayedMatrixStats, SummarizedExperiment, testthat (>= 2.1.0)
 requirements:
@@ -34,4 +35,3 @@ about:
   license: Artistic-2.0
   summary: 'S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects'
   description: 'S4 generic functions modeled after the ''matrixStats'' API for alternative matrix implementations. Packages with alternative matrix implementation can depend on this package and implement the generic functions that are defined here for a useful set of row and column summary statistics. Other package developers can import this package and handle a different matrix implementations without worrying about incompatibilities.'
-
diff --git a/recipes/bioconductor-matrixqcvis/meta.yaml b/recipes/bioconductor-matrixqcvis/meta.yaml
index 4042891f77548..39bd88b0aa423 100644
--- a/recipes/bioconductor-matrixqcvis/meta.yaml
+++ b/recipes/bioconductor-matrixqcvis/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "MatrixQCvis" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a3c78e12fc1b9c6bda807c330f86197e
+  md5: 21f91ace512d3afadd5fe42e93ba7fe9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-matrixqcvis", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics (>= 0.37.4), BiocStyle (>= 2.19.2), hexbin (>= 1.28.2), jpeg (>= 0.1-10), knitr (>= 1.33), statmod (>= 1.5.0), testthat (>= 3.0.2)
 requirements:
   host:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-proda >=1.14.0,<1.15.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-proda >=1.16.0,<1.17.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-base
     - 'r-dplyr >=1.0.5'
     - 'r-ggplot2 >=3.3.3'
@@ -49,14 +50,14 @@ requirements:
     - 'r-umap >=0.2.7.0'
     - 'r-upsetr >=1.4.0'
   run:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-proda >=1.14.0,<1.15.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-proda >=1.16.0,<1.17.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-base
     - 'r-dplyr >=1.0.5'
     - 'r-ggplot2 >=3.3.3'
diff --git a/recipes/bioconductor-matrixrider/meta.yaml b/recipes/bioconductor-matrixrider/meta.yaml
index c0e2a75d98583..89be4c1d9d40e 100644
--- a/recipes/bioconductor-matrixrider/meta.yaml
+++ b/recipes/bioconductor-matrixrider/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "MatrixRider" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9831760b8e5550b70367da373860cdd9
+  md5: 2de2ee8befc7dcf6b84ea6630a0c089f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-matrixrider", max_pin="x.x") }}'
 # Suggests: RUnit, BiocGenerics, BiocStyle, JASPAR2014
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-tfbstools >=1.38.0,<1.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-tfbstools >=1.40.0,<1.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-tfbstools >=1.38.0,<1.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-tfbstools >=1.40.0,<1.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-matter/meta.yaml b/recipes/bioconductor-matter/meta.yaml
index 37f67677cee07..631bf8eaa0512 100644
--- a/recipes/bioconductor-matter/meta.yaml
+++ b/recipes/bioconductor-matter/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.2.0" %}
+{% set version = "2.4.0" %}
 {% set name = "matter" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 9af0c8ea4ebd31da1bb4d27f0e610989
+  md5: 08919bc0df5442e0916ee7cffbc23003
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-matter", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, testthat
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
     - r-base
     - r-biglm
     - r-digest
@@ -31,9 +32,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
     - r-base
     - r-biglm
     - r-digest
@@ -49,8 +50,8 @@ test:
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: Artistic-2.0
-  summary: 'A framework for rapid prototyping with file-based data structures'
-  description: 'Memory-efficient reading, writing, and manipulation of structured binary data as file-based vectors, matrices, arrays, lists, and data frames.'
+  summary: 'Out-of-memory dense and sparse signal arrays'
+  description: 'Memory-efficient file-based data structures for dense and sparse vectors, matrices, arrays, and lists with applications to nonuniformly sampled signals and spectra.'
 extra:
   identifiers:
     - biotools:matter
diff --git a/recipes/bioconductor-mbamethyl/meta.yaml b/recipes/bioconductor-mbamethyl/meta.yaml
index 9df037c318d99..d76d4dc6cc97c 100644
--- a/recipes/bioconductor-mbamethyl/meta.yaml
+++ b/recipes/bioconductor-mbamethyl/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "MBAmethyl" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c62ade813fcdb70923e320b12b345e16
+  md5: 0b6ac0d76525c156606d08bcbf606709
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mbamethyl", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-mbased/meta.yaml b/recipes/bioconductor-mbased/meta.yaml
index 2307cd01cdd85..02ada98f3ea95 100644
--- a/recipes/bioconductor-mbased/meta.yaml
+++ b/recipes/bioconductor-mbased/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "MBASED" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7a182ddefc6e826fc016a735e09a4dda
+  md5: 441d95c8a2670c6d5fd3488ed33aad2d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mbased", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-runit
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-runit
 test:
diff --git a/recipes/bioconductor-mbcb/meta.yaml b/recipes/bioconductor-mbcb/meta.yaml
index d4d4d3ad6c293..10a541c33c679 100644
--- a/recipes/bioconductor-mbcb/meta.yaml
+++ b/recipes/bioconductor-mbcb/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.54.0" %}
+{% set version = "1.56.0" %}
 {% set name = "MBCB" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 96f8ffc0fec24d84ad88762f060594ca
+  md5: 51a88491b8d5872a1088def3f6113466
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mbcb", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-tcltk2
   run:
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-tcltk2
 test:
diff --git a/recipes/bioconductor-mbecs/meta.yaml b/recipes/bioconductor-mbecs/meta.yaml
index 353e54f8d4950..027ca183cf4f5 100644
--- a/recipes/bioconductor-mbecs/meta.yaml
+++ b/recipes/bioconductor-mbecs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "MBECS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6ce3a45af4cc4421da87dbb1a2350be7
+  md5: 5e7481e4bcd7fc20a2251635324035a4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mbecs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, markdown, BiocStyle, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-cluster
     - r-dplyr
@@ -40,9 +41,9 @@ requirements:
     - r-tidyr
     - r-vegan
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-cluster
     - r-dplyr
diff --git a/recipes/bioconductor-mbkmeans/meta.yaml b/recipes/bioconductor-mbkmeans/meta.yaml
index f8b3093cd52f8..7d17593365b4e 100644
--- a/recipes/bioconductor-mbkmeans/meta.yaml
+++ b/recipes/bioconductor-mbkmeans/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "mbkmeans" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 7b6ff2a1ccf521fe1bf7a20e41b88d88
+  md5: 1bd55f0f927fea250caa1a8264e3013c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mbkmeans", max_pin="x.x") }}'
 # Suggests: beachmat, HDF5Array, Rhdf5lib, BiocStyle, TENxPBMCData, scater, DelayedMatrixStats, bluster, knitr, testthat, rmarkdown
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-beachmat >=2.16.0,<2.17.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-benchmarkme
     - r-clusterr
@@ -37,13 +38,13 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-beachmat >=2.16.0,<2.17.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-benchmarkme
     - r-clusterr
diff --git a/recipes/bioconductor-mbpcr/meta.yaml b/recipes/bioconductor-mbpcr/meta.yaml
index 350f2c9b1ecb9..bdcd2d19a5648 100644
--- a/recipes/bioconductor-mbpcr/meta.yaml
+++ b/recipes/bioconductor-mbpcr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.54.0" %}
+{% set version = "1.56.0" %}
 {% set name = "mBPCR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d80f58ccbe4015bcdc599ba75d2a68d5
+  md5: 1d48a3fd5a04c61ce96aa4da34d364a2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mbpcr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: xtable
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-gwastools >=1.46.0,<1.47.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-gwastools >=1.48.0,<1.49.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-gwastools >=1.46.0,<1.47.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-gwastools >=1.48.0,<1.49.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-mbqn/meta.yaml b/recipes/bioconductor-mbqn/meta.yaml
index 201c9c2424cbf..37d730a8cbee4 100644
--- a/recipes/bioconductor-mbqn/meta.yaml
+++ b/recipes/bioconductor-mbqn/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.12.0" %}
+{% set version = "2.14.0" %}
 {% set name = "MBQN" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: af21afa905ec9efb9a8ae56c6c974e10
+  md5: e48e4ebcd3b69b82559496b66ca4cf44
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mbqn", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-paireddata
@@ -33,10 +34,10 @@ requirements:
     - r-rmarkdown
     - r-xml2
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-paireddata
diff --git a/recipes/bioconductor-mbqtl/meta.yaml b/recipes/bioconductor-mbqtl/meta.yaml
index 7bb44f7edfa24..c92f3949b66e7 100644
--- a/recipes/bioconductor-mbqtl/meta.yaml
+++ b/recipes/bioconductor-mbqtl/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "mbQTL" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d840e98993cc26ca1dbb216dacdda443
+  md5: 5b8464d079a9297ed19fcdfade113190
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mbqtl", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-metagenomeseq >=1.42.0,<1.43.0'
+    - 'bioconductor-metagenomeseq >=1.43.0,<1.44.0'
     - r-base
     - r-broom
     - r-dplyr
@@ -32,7 +33,7 @@ requirements:
     - r-stringr
     - r-tidyr
   run:
-    - 'bioconductor-metagenomeseq >=1.42.0,<1.43.0'
+    - 'bioconductor-metagenomeseq >=1.43.0,<1.44.0'
     - r-base
     - r-broom
     - r-dplyr
diff --git a/recipes/bioconductor-mbttest/meta.yaml b/recipes/bioconductor-mbttest/meta.yaml
index 5c77e8f2124b3..a9891797e564b 100644
--- a/recipes/bioconductor-mbttest/meta.yaml
+++ b/recipes/bioconductor-mbttest/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "MBttest" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: aa0087a2a95b5f53df47bea5d6076fd4
+  md5: 35c603063456aab63ffa0ebfc67a3c16
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mbttest", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, BiocGenerics
 requirements:
diff --git a/recipes/bioconductor-mcbiclust/meta.yaml b/recipes/bioconductor-mcbiclust/meta.yaml
index c34d3fb25fd94..ba83c329537ca 100644
--- a/recipes/bioconductor-mcbiclust/meta.yaml
+++ b/recipes/bioconductor-mcbiclust/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "MCbiclust" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 975f96f64105c1969462273506b9d06e
+  md5: dd042cb41360eec094ff9596439d3aa6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mcbiclust", max_pin="x.x") }}'
   noarch: generic
 # Suggests: gplots, knitr, rmarkdown, BiocStyle, gProfileR, MASS, dplyr, pander, devtools, testthat, GSVA
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - r-cluster
     - r-ggally
@@ -32,10 +33,10 @@ requirements:
     - r-scales
     - r-wgcna
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - r-cluster
     - r-ggally
diff --git a/recipes/bioconductor-mcsea/meta.yaml b/recipes/bioconductor-mcsea/meta.yaml
index 8f97facbb1825..6e571eec95da3 100644
--- a/recipes/bioconductor-mcsea/meta.yaml
+++ b/recipes/bioconductor-mcsea/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "mCSEA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,41 +11,42 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 91864cc204cc545d5bd60196c1176efd
+  md5: 8bac97f11934f91da5250521a7b26f75
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mcsea", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biobase, BiocGenerics, BiocStyle, FlowSorted.Blood.450k, knitr, leukemiasEset, minfi, minfiData, rmarkdown, RUnit
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
     - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-mcseadata >=1.20.0,<1.21.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-mcseadata >=1.22.0,<1.23.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
     - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-mcseadata >=1.20.0,<1.21.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-mcseadata >=1.22.0,<1.23.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
 test:
diff --git a/recipes/bioconductor-mcseadata/meta.yaml b/recipes/bioconductor-mcseadata/meta.yaml
index f8469dde6c5e9..08f1aea183985 100644
--- a/recipes/bioconductor-mcseadata/meta.yaml
+++ b/recipes/bioconductor-mcseadata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.1" %}
+{% set version = "1.22.0" %}
 {% set name = "mCSEAdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 43b69165fffc6652fc2df2395bd0b8e6
+  md5: 11f8150e223a0e8d8fa5b9b8dedaa374
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mcseadata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230717
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mcseadata/post-link.sh b/recipes/bioconductor-mcseadata/post-link.sh
index 2eeaf2308191f..eddebf7dac4c4 100644
--- a/recipes/bioconductor-mcseadata/post-link.sh
+++ b/recipes/bioconductor-mcseadata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "mcseadata-1.20.1"
+installBiocDataPackage.sh "mcseadata-1.22.0"
diff --git a/recipes/bioconductor-mcsurvdata/meta.yaml b/recipes/bioconductor-mcsurvdata/meta.yaml
index ec4f53953e076..07bb985fda8c3 100644
--- a/recipes/bioconductor-mcsurvdata/meta.yaml
+++ b/recipes/bioconductor-mcsurvdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "mcsurvdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 4e4b6fa4d49cfa4588d65cb3a22ab121
+  md5: 0299258c7610f3675dc0b9f8e333eefa
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mcsurvdata", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr
+# Suggests: BiocStyle, knitr
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mcsurvdata/post-link.sh b/recipes/bioconductor-mcsurvdata/post-link.sh
index f95e358811081..2585fbcb3d43f 100644
--- a/recipes/bioconductor-mcsurvdata/post-link.sh
+++ b/recipes/bioconductor-mcsurvdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "mcsurvdata-1.18.0"
+installBiocDataPackage.sh "mcsurvdata-1.20.0"
diff --git a/recipes/bioconductor-mdp/meta.yaml b/recipes/bioconductor-mdp/meta.yaml
index b78f40966c9e2..b0c34a1dd0fdb 100644
--- a/recipes/bioconductor-mdp/meta.yaml
+++ b/recipes/bioconductor-mdp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "mdp" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 2ffda81dd0c84bae56391e259a9b8e30
+  md5: a947b52acd7f930a3babcdb4e429bb0c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mdp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, fgsea, BiocManager
 requirements:
diff --git a/recipes/bioconductor-mdqc/meta.yaml b/recipes/bioconductor-mdqc/meta.yaml
index db49be2c8f742..1ffa27337522e 100644
--- a/recipes/bioconductor-mdqc/meta.yaml
+++ b/recipes/bioconductor-mdqc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.62.0" %}
+{% set version = "1.64.0" %}
 {% set name = "mdqc" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: b3ec385cc5a3e1239228514e209bcc3e
+  md5: a9dd8adf71b5fe15b4b5b444f0b43110
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mdqc", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-mdts/meta.yaml b/recipes/bioconductor-mdts/meta.yaml
index d7b9e11c822c9..4f9602a0f22b3 100644
--- a/recipes/bioconductor-mdts/meta.yaml
+++ b/recipes/bioconductor-mdts/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "MDTS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8c9c5c88b0658f84733f792cdd6bdaed
+  md5: a9ab8fa7a5e9ef7dcdb28fb553b895f6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mdts", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-stringr
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-stringr
 test:
diff --git a/recipes/bioconductor-meal/meta.yaml b/recipes/bioconductor-meal/meta.yaml
index 247dfcfd6a427..3ab450a08d105 100644
--- a/recipes/bioconductor-meal/meta.yaml
+++ b/recipes/bioconductor-meal/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "MEAL" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9de73f065fd4e5bfad6f5b3d9aea5ea0
+  md5: f157edf85ba036b17edb728a44e2e519
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-meal", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, IlluminaHumanMethylation450kanno.ilmn12.hg19, knitr, minfiData, BiocStyle, rmarkdown, brgedata
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-missmethyl >=1.34.0,<1.35.0'
-    - 'bioconductor-multidataset >=1.28.0,<1.29.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-missmethyl >=1.36.0,<1.37.0'
+    - 'bioconductor-multidataset >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-ggplot2 >=2.0.0'
     - r-isva
@@ -40,17 +41,17 @@ requirements:
     - r-smartsva
     - r-vegan
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-missmethyl >=1.34.0,<1.35.0'
-    - 'bioconductor-multidataset >=1.28.0,<1.29.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-missmethyl >=1.36.0,<1.37.0'
+    - 'bioconductor-multidataset >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-ggplot2 >=2.0.0'
     - r-isva
diff --git a/recipes/bioconductor-measurementerror.cor/meta.yaml b/recipes/bioconductor-measurementerror.cor/meta.yaml
index 5a6ed80d42dd6..a008cdd80f4d1 100644
--- a/recipes/bioconductor-measurementerror.cor/meta.yaml
+++ b/recipes/bioconductor-measurementerror.cor/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "MeasurementError.cor" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a8d6f3c05b7e609ef2150c1bc1a294ea
+  md5: 7de3f5ca3749a7b1e80fdfa66204a252
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-measurementerror.cor", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-meat/meta.yaml b/recipes/bioconductor-meat/meta.yaml
index 3043cdb47180e..084d2922cfced 100644
--- a/recipes/bioconductor-meat/meta.yaml
+++ b/recipes/bioconductor-meat/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "MEAT" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e3f19960d36b1330ef8aee3c8b0922fc
+  md5: ea3f3041f0bdfab3844cea85f8d28c9b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-meat", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, markdown, rmarkdown, BiocStyle, testthat (>= 2.1.0)
 requirements:
   host:
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-watermelon >=2.6.0,<2.7.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-watermelon >=2.8.0,<2.9.0'
     - r-base
     - r-dplyr
     - 'r-dynamictreecut >=1.63'
@@ -33,10 +34,10 @@ requirements:
     - r-stringr
     - r-tibble
   run:
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-watermelon >=2.6.0,<2.7.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-watermelon >=2.8.0,<2.9.0'
     - r-base
     - r-dplyr
     - 'r-dynamictreecut >=1.63'
diff --git a/recipes/bioconductor-meb/meta.yaml b/recipes/bioconductor-meb/meta.yaml
index 74df08e06a995..fbe884a83a68b 100644
--- a/recipes/bioconductor-meb/meta.yaml
+++ b/recipes/bioconductor-meb/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %} 
+{% set version = "1.16.0" %}
 {% set name = "MEB" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8d4d4b70c1d2127e1dd18241c6fabde2
+  md5: b1785984524fee5b32976a5e768037d6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-meb", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr,rmarkdown,BiocStyle
 requirements:
   host:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-e1071
     - r-wrswor
   run:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-e1071
     - r-wrswor
diff --git a/recipes/bioconductor-medicagocdf/meta.yaml b/recipes/bioconductor-medicagocdf/meta.yaml
index f055eb8e01c78..4f18d4e92ad67 100644
--- a/recipes/bioconductor-medicagocdf/meta.yaml
+++ b/recipes/bioconductor-medicagocdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "medicagocdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 1fbb2e4c070344d18e65f1b3993867db
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-medicagocdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-medicagoprobe/meta.yaml b/recipes/bioconductor-medicagoprobe/meta.yaml
index f508bc9f63561..64886de29099e 100644
--- a/recipes/bioconductor-medicagoprobe/meta.yaml
+++ b/recipes/bioconductor-medicagoprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "medicagoprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 83b9887ad2ed26c704b0ca7115e5838d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-medicagoprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-medips/meta.yaml b/recipes/bioconductor-medips/meta.yaml
index 314a6d555c7ca..fa842250f78ce 100644
--- a/recipes/bioconductor-medips/meta.yaml
+++ b/recipes/bioconductor-medips/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.52.0" %}
+{% set version = "1.54.0" %}
 {% set name = "MEDIPS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,39 +11,40 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f9d22ca90431583329f7bc0d04937b21
+  md5: 088394b1864d37eba7ed1064a9d671e9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-medips", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Hsapiens.UCSC.hg19, MEDIPSData, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-gtools
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-gtools
 test:
diff --git a/recipes/bioconductor-medipsdata/meta.yaml b/recipes/bioconductor-medipsdata/meta.yaml
index 22526db86a800..898fea78b24ec 100644
--- a/recipes/bioconductor-medipsdata/meta.yaml
+++ b/recipes/bioconductor-medipsdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "MEDIPSData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d6d822abd5a2acc639cad1a270f03a2d
+  md5: 7b329ecedb2e9911b92ad669856abf2b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-medipsdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-medipsdata/post-link.sh b/recipes/bioconductor-medipsdata/post-link.sh
index a62231fab4e43..82ae17809dfbd 100644
--- a/recipes/bioconductor-medipsdata/post-link.sh
+++ b/recipes/bioconductor-medipsdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "medipsdata-1.36.0"
+installBiocDataPackage.sh "medipsdata-1.38.0"
diff --git a/recipes/bioconductor-medme/meta.yaml b/recipes/bioconductor-medme/meta.yaml
index 366e23083231d..83cc34d658330 100644
--- a/recipes/bioconductor-medme/meta.yaml
+++ b/recipes/bioconductor-medme/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.60.0" %}
+{% set version = "1.62.0" %}
 {% set name = "MEDME" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b5459677fe2fd70028253a9a58f4caf5
+  md5: 03868c2e2f04af9c9f33d48cc6abed08
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-medme", max_pin="x.x") }}'
 # Suggests: BSgenome.Hsapiens.UCSC.hg18, BSgenome.Mmusculus.UCSC.mm9
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - r-drc
     - r-mass
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - r-drc
     - r-mass
diff --git a/recipes/bioconductor-meebodata/meta.yaml b/recipes/bioconductor-meebodata/meta.yaml
index d31b64df4acf4..4f4e1ad5b8435 100644
--- a/recipes/bioconductor-meebodata/meta.yaml
+++ b/recipes/bioconductor-meebodata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "MEEBOdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0eb2ee76322ae64e44bb926769bd1f77
+  md5: cd3b9bb8a918c9497903f6274f323904
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-meebodata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-meebodata/post-link.sh b/recipes/bioconductor-meebodata/post-link.sh
index 7e37c76550466..f406ddac9857c 100644
--- a/recipes/bioconductor-meebodata/post-link.sh
+++ b/recipes/bioconductor-meebodata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "meebodata-1.38.0"
+installBiocDataPackage.sh "meebodata-1.40.0"
diff --git a/recipes/bioconductor-megadepth/meta.yaml b/recipes/bioconductor-megadepth/meta.yaml
index 6819b6c8c78ef..c3dc6063d66e7 100644
--- a/recipes/bioconductor-megadepth/meta.yaml
+++ b/recipes/bioconductor-megadepth/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "megadepth" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 51770a42690eedccaf6282e0b5dbdf61
+  md5: 5fa04f9d4075030126388db419378304
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-megadepth", max_pin="x.x") }}'
   noarch: generic
 # Suggests: covr, knitr, BiocStyle, sessioninfo, rmarkdown, rtracklayer, derfinder, GenomeInfoDb, tools, RefManageR, testthat
 # SystemRequirements: megadepth (<https://github.com/ChristopherWilks/megadepth>)
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-cmdfun
     - r-dplyr
@@ -31,7 +32,7 @@ requirements:
     - r-readr
     - r-xfun
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-cmdfun
     - r-dplyr
diff --git a/recipes/bioconductor-melissa/meta.yaml b/recipes/bioconductor-melissa/meta.yaml
index 47c67940b57d9..c69b137991ec8 100644
--- a/recipes/bioconductor-melissa/meta.yaml
+++ b/recipes/bioconductor-melissa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "Melissa" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1557389f567dcdd1cc017fc4bd688d16
+  md5: 25f975650bec04b62c6e022b11cc33c6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-melissa", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-bprmeth >=1.26.0,<1.27.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-bprmeth >=1.28.0,<1.29.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-assertthat
     - r-base
     - r-cowplot
@@ -39,9 +40,9 @@ requirements:
     - r-rocr
     - r-truncnorm
   run:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-bprmeth >=1.26.0,<1.27.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-bprmeth >=1.28.0,<1.29.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-assertthat
     - r-base
     - r-cowplot
diff --git a/recipes/bioconductor-memes/meta.yaml b/recipes/bioconductor-memes/meta.yaml
index 7c654b09008a7..eb689687be72c 100644
--- a/recipes/bioconductor-memes/meta.yaml
+++ b/recipes/bioconductor-memes/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "memes" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 637b0a3bf608e7dbdb5b909a53fb1815
+  md5: c9b7baebb9608344040a4dc38a05dea3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-memes", max_pin="x.x") }}'
   noarch: generic
 # Suggests: cowplot, BSgenome.Dmelanogaster.UCSC.dm3, BSgenome.Dmelanogaster.UCSC.dm6, forcats, testthat (>= 2.1.0), knitr, MotifDb, pheatmap, PMCMRplus, plyranges (>= 1.9.1), rmarkdown, covr
 # SystemRequirements: Meme Suite (v5.3.3 or above) <http://meme-suite.org/doc/download.html>
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-universalmotif >=1.18.0,<1.19.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-universalmotif >=1.20.0,<1.21.0'
     - r-base
     - 'r-cmdfun >=1.0.2'
     - r-dplyr
@@ -42,9 +43,9 @@ requirements:
     - r-usethis
     - r-xml2
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-universalmotif >=1.18.0,<1.19.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-universalmotif >=1.20.0,<1.21.0'
     - r-base
     - 'r-cmdfun >=1.0.2'
     - r-dplyr
diff --git a/recipes/bioconductor-merfishdata/meta.yaml b/recipes/bioconductor-merfishdata/meta.yaml
index 7577ff46666b0..70f5bd162ef8c 100644
--- a/recipes/bioconductor-merfishdata/meta.yaml
+++ b/recipes/bioconductor-merfishdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.1" %}
 {% set name = "MerfishData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,37 +11,38 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d4e86b95520641c0d3f1b5c938d5a3b7
+  md5: 05369f89c4e1a15bdab1ce5174facbe4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-merfishdata", max_pin="x.x") }}'
   noarch: generic
-# Suggests: grid, ggplot2, ggpubr, knitr, rmarkdown, testthat, BiocStyle
+# Suggests: grid, ggplot2, ggpubr, knitr, rmarkdown, testthat, BiocStyle, DropletUtils
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-bumpymatrix >=1.8.0,<1.9.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-bumpymatrix >=1.10.0,<1.11.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-bumpymatrix >=1.8.0,<1.9.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-bumpymatrix >=1.10.0,<1.11.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-merfishdata/post-link.sh b/recipes/bioconductor-merfishdata/post-link.sh
index 96590c781dc87..d616f8e059879 100644
--- a/recipes/bioconductor-merfishdata/post-link.sh
+++ b/recipes/bioconductor-merfishdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "merfishdata-1.2.0"
+installBiocDataPackage.sh "merfishdata-1.4.1"
diff --git a/recipes/bioconductor-mergeomics/meta.yaml b/recipes/bioconductor-mergeomics/meta.yaml
index a8273f2a04cda..5284a10f7d961 100644
--- a/recipes/bioconductor-mergeomics/meta.yaml
+++ b/recipes/bioconductor-mergeomics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "Mergeomics" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ed07a8df123e4d35ec9671e2cad53bf5
+  md5: 1b8f5bc8cf54fa99df988a83c71737d3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mergeomics", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics
 requirements:
diff --git a/recipes/bioconductor-meshdbi/meta.yaml b/recipes/bioconductor-meshdbi/meta.yaml
index 2a2268ae1d56d..05e67cd414ef0 100644
--- a/recipes/bioconductor-meshdbi/meta.yaml
+++ b/recipes/bioconductor-meshdbi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "MeSHDbi" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: acde95248b916ed0e3674a2d030c45b5
+  md5: edb738bd5c18f7017ebd13bd0cce9d2f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-meshdbi", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-rsqlite
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-rsqlite
 test:
diff --git a/recipes/bioconductor-meshes/meta.yaml b/recipes/bioconductor-meshes/meta.yaml
index c7227ce2fb5dc..860286dd24bc5 100644
--- a/recipes/bioconductor-meshes/meta.yaml
+++ b/recipes/bioconductor-meshes/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "meshes" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f7b0ab25441510c48b40e9ab09a53615
+  md5: 90be6eeeb3ced1146ddcba48e2ec6c6e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-meshes", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, prettydoc
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-enrichplot >=1.20.0,<1.21.0'
-    - 'bioconductor-gosemsim >=2.26.0,<2.27.0'
-    - 'bioconductor-meshdbi >=1.36.0,<1.37.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-enrichplot >=1.22.0,<1.23.0'
+    - 'bioconductor-gosemsim >=2.28.0,<2.29.0'
+    - 'bioconductor-meshdbi >=1.38.0,<1.39.0'
     - r-base
     - r-yulab.utils
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-enrichplot >=1.20.0,<1.21.0'
-    - 'bioconductor-gosemsim >=2.26.0,<2.27.0'
-    - 'bioconductor-meshdbi >=1.36.0,<1.37.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-enrichplot >=1.22.0,<1.23.0'
+    - 'bioconductor-gosemsim >=2.28.0,<2.29.0'
+    - 'bioconductor-meshdbi >=1.38.0,<1.39.0'
     - r-base
     - r-yulab.utils
 test:
diff --git a/recipes/bioconductor-meshr/meta.yaml b/recipes/bioconductor-meshr/meta.yaml
index b973725c15fa7..529a0bdbb3121 100644
--- a/recipes/bioconductor-meshr/meta.yaml
+++ b/recipes/bioconductor-meshr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.6.0" %}
+{% set version = "2.8.0" %}
 {% set name = "meshr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 7bcf4253b38df394c838c2cc477f84a9
+  md5: 7809b970dabdb3c42112e6b3aad5b75b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-meshr", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-category >=2.66.0,<2.67.0'
-    - 'bioconductor-meshdbi >=1.36.0,<1.37.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-category >=2.68.0,<2.69.0'
+    - 'bioconductor-meshdbi >=1.38.0,<1.39.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-fdrtool
     - r-knitr
@@ -32,11 +33,11 @@ requirements:
     - r-rmarkdown
     - r-rsqlite
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-category >=2.66.0,<2.67.0'
-    - 'bioconductor-meshdbi >=1.36.0,<1.37.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-category >=2.68.0,<2.69.0'
+    - 'bioconductor-meshdbi >=1.38.0,<1.39.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-fdrtool
     - r-knitr
diff --git a/recipes/bioconductor-meskit/meta.yaml b/recipes/bioconductor-meskit/meta.yaml
index efea8c2955c60..df270a05c0104 100644
--- a/recipes/bioconductor-meskit/meta.yaml
+++ b/recipes/bioconductor-meskit/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "MesKit" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: eac8c8557107d7d2efca76e50a999af0
+  md5: 909ad92f34384c66c0e86f0f13ff7e71
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-meskit", max_pin="x.x") }}'
   noarch: generic
 # Suggests: shiny, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19 (>= 1.4.0), org.Hs.eg.db, clusterProfiler, TxDb.Hsapiens.UCSC.hg19.knownGene
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'r-ape >=5.4.1'
     - r-base
     - r-circlize
@@ -41,11 +42,11 @@ requirements:
     - r-rcolorbrewer
     - 'r-tidyr >=1.0.0'
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'r-ape >=5.4.1'
     - r-base
     - r-circlize
diff --git a/recipes/bioconductor-messina/meta.yaml b/recipes/bioconductor-messina/meta.yaml
index 2a5a2a4501225..48739dc5c9b95 100644
--- a/recipes/bioconductor-messina/meta.yaml
+++ b/recipes/bioconductor-messina/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "messina" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 62c9610704259aa1b9f838966beac394
+  md5: ad9cfdec37597c8a312b49085f1ff124
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-messina", max_pin="x.x") }}'
 # Suggests: knitr (>= 1.5), antiProfilesData (>= 0.99.2), Biobase (>= 2.22.0), BiocStyle
 requirements:
   host:
diff --git a/recipes/bioconductor-metabcombiner/meta.yaml b/recipes/bioconductor-metabcombiner/meta.yaml
index 7b6bcb0515d1d..9b9563bf04b9f 100644
--- a/recipes/bioconductor-metabcombiner/meta.yaml
+++ b/recipes/bioconductor-metabcombiner/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "metabCombiner" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,16 +11,17 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fb2078d2857b0824411b6d7942c469ef
+  md5: 9840a8f7cdc657e21d3ebc2a7b6b68b2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metabcombiner", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, testthat, BiocStyle
 requirements:
   host:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-caret
     - 'r-dplyr >=1.0'
@@ -31,7 +32,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-caret
     - 'r-dplyr >=1.0'
diff --git a/recipes/bioconductor-metabinr/meta.yaml b/recipes/bioconductor-metabinr/meta.yaml
index c7e099f880000..67899dd2e1f85 100644
--- a/recipes/bioconductor-metabinr/meta.yaml
+++ b/recipes/bioconductor-metabinr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "metabinR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 66c3ea5a3163579c070dde3a0a7fb1f7
+  md5: 7080ae8eac49640aeae95bda1185ac7d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metabinr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, cvms, data.table, dplyr, ggplot2, gridExtra, knitr, R.utils, rmarkdown, sabre, spelling, testthat (>= 3.0.0)
 # SystemRequirements: Java (>= 8)
diff --git a/recipes/bioconductor-metaboannotation/meta.yaml b/recipes/bioconductor-metaboannotation/meta.yaml
index bcedfe552443b..4664b5262cd69 100644
--- a/recipes/bioconductor-metaboannotation/meta.yaml
+++ b/recipes/bioconductor-metaboannotation/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.1" %}
+{% set version = "1.6.1" %}
 {% set name = "MetaboAnnotation" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,38 +11,41 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ddd0682814407d9262bc9e82c223adb3
+  md5: fee181fc1795a1e2bde1d1e551f1a45e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metaboannotation", max_pin="x.x") }}'
   noarch: generic
-# Suggests: testthat, knitr, msdata, BiocStyle, rmarkdown, plotly, shiny, shinyjs, DT, AnnotationHub, microbenchmark, mzR
+# Suggests: testthat, knitr, msdata, BiocStyle, rmarkdown, plotly, shiny, shinyjs, DT, microbenchmark, mzR
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-compounddb >=1.4.0,<1.5.0'
-    - 'bioconductor-metabocoreutils >=1.8.0,<1.9.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-qfeatures >=1.10.0,<1.11.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-spectra >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-compounddb >=1.6.0,<1.7.0'
+    - 'bioconductor-metabocoreutils >=1.10.0,<1.11.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-qfeatures >=1.12.0,<1.13.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spectra >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-compounddb >=1.4.0,<1.5.0'
-    - 'bioconductor-metabocoreutils >=1.8.0,<1.9.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-qfeatures >=1.10.0,<1.11.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-spectra >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-compounddb >=1.6.0,<1.7.0'
+    - 'bioconductor-metabocoreutils >=1.10.0,<1.11.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-qfeatures >=1.12.0,<1.13.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spectra >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-metabocoreutils/meta.yaml b/recipes/bioconductor-metabocoreutils/meta.yaml
index 592a4adbde4b1..a73ae28540ebe 100644
--- a/recipes/bioconductor-metabocoreutils/meta.yaml
+++ b/recipes/bioconductor-metabocoreutils/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "MetaboCoreUtils" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 91404bfbcac731a6ee59e80d777e2148
+  md5: e4b834af09aa89158b64b8586d4d15c4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metabocoreutils", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, testthat, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
     - r-base
   run:
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-metaboliteidmapping/meta.yaml b/recipes/bioconductor-metaboliteidmapping/meta.yaml
index d8785e941a169..e248f2cb8aadb 100644
--- a/recipes/bioconductor-metaboliteidmapping/meta.yaml
+++ b/recipes/bioconductor-metaboliteidmapping/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.0" %}
 {% set name = "metaboliteIDmapping" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: bd78ec373ce90fac1a10d2c64c462e77
 build:
-  number: 4
+  number: 5
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metaboliteidmapping", max_pin="x.x") }}'
   noarch: generic
 # Suggests: magrittr, graphite, dplyr, tidyr, tibble, rappdirs, XML, readxl, stringr, utils, knitr, sets, R.utils, readr, conflicted, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-metabolomicsworkbenchr/meta.yaml b/recipes/bioconductor-metabolomicsworkbenchr/meta.yaml
index e85a7ad245869..d4c21164ee6d0 100644
--- a/recipes/bioconductor-metabolomicsworkbenchr/meta.yaml
+++ b/recipes/bioconductor-metabolomicsworkbenchr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "metabolomicsWorkbenchR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5501c9f3300368e1e579ddf3eb89b678
+  md5: 7e8485177f5ad463ff6a0f6e573e74fb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metabolomicsworkbenchr", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BiocStyle, covr, knitr, HDF5Array, rmarkdown, structToolbox, testthat, pmp, grid, png
+# Suggests: BiocStyle, covr, knitr, HDF5Array, httptest, rmarkdown, structToolbox, testthat, pmp, grid, png
 requirements:
   host:
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-struct >=1.12.0,<1.13.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-struct >=1.14.0,<1.15.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-httr
     - r-jsonlite
   run:
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-struct >=1.12.0,<1.13.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-struct >=1.14.0,<1.15.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-httr
diff --git a/recipes/bioconductor-metabomxtr/meta.yaml b/recipes/bioconductor-metabomxtr/meta.yaml
index 67917cf5d5f8e..1ab86aa0f3f66 100644
--- a/recipes/bioconductor-metabomxtr/meta.yaml
+++ b/recipes/bioconductor-metabomxtr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "metabomxtr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 9b3776d7ca5080f4c33fffbf74603ca8
+  md5: ec247e3fe8099096d1bfcc8fff93f08d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metabomxtr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: xtable, reshape2
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
     - r-formula
     - r-ggplot2
     - r-optimx
     - r-plyr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
     - r-formula
     - r-ggplot2
diff --git a/recipes/bioconductor-metabosignal/meta.yaml b/recipes/bioconductor-metabosignal/meta.yaml
index d737fef136bbb..01f312d812830 100644
--- a/recipes/bioconductor-metabosignal/meta.yaml
+++ b/recipes/bioconductor-metabosignal/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.1" %}
+{% set version = "1.32.0" %}
 {% set name = "MetaboSignal" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,38 +11,39 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4ff7b743e46475cfa8a60e92bcea0986
+  md5: a8f1dc09626a1881461f987e726078bf
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metabosignal", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, knitr, BiocStyle, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
     - 'bioconductor-ensdb.hsapiens.v75 >=2.99.0,<2.100.0'
-    - 'bioconductor-hpar >=1.42.0,<1.43.0'
-    - 'bioconductor-kegggraph >=1.60.0,<1.61.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-mwastools >=1.24.0,<1.25.0'
-    - 'bioconductor-mygene >=1.36.0,<1.37.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-hpar >=1.44.0,<1.45.0'
+    - 'bioconductor-kegggraph >=1.62.0,<1.63.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-mwastools >=1.26.0,<1.27.0'
+    - 'bioconductor-mygene >=1.38.0,<1.39.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - r-igraph
     - r-rcurl
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
     - 'bioconductor-ensdb.hsapiens.v75 >=2.99.0,<2.100.0'
-    - 'bioconductor-hpar >=1.42.0,<1.43.0'
-    - 'bioconductor-kegggraph >=1.60.0,<1.61.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-mwastools >=1.24.0,<1.25.0'
-    - 'bioconductor-mygene >=1.36.0,<1.37.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-hpar >=1.44.0,<1.45.0'
+    - 'bioconductor-kegggraph >=1.62.0,<1.63.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-mwastools >=1.26.0,<1.27.0'
+    - 'bioconductor-mygene >=1.38.0,<1.39.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - r-igraph
     - r-rcurl
diff --git a/recipes/bioconductor-metacca/meta.yaml b/recipes/bioconductor-metacca/meta.yaml
index 4f5e4e50e1ea6..851175efd2c07 100644
--- a/recipes/bioconductor-metacca/meta.yaml
+++ b/recipes/bioconductor-metacca/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "metaCCA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 94d27eb69649e28b07201192f1022a8e
+  md5: d5be58f253912b275964a681a508234d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metacca", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
diff --git a/recipes/bioconductor-metacyto/meta.yaml b/recipes/bioconductor-metacyto/meta.yaml
index b5da01927e8db..e7c7260f307a2 100644
--- a/recipes/bioconductor-metacyto/meta.yaml
+++ b/recipes/bioconductor-metacyto/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "MetaCyto" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 22428db1b2332f3d7fbde4f03fc5ffed
+  md5: 0cd04a831a226a35bdeb881c03d30193
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metacyto", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, dplyr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowsom >=2.8.0,<2.9.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowsom >=2.10.0,<2.11.0'
     - r-base
     - r-cluster
     - r-fastcluster
@@ -30,8 +31,8 @@ requirements:
     - r-metafor
     - 'r-tidyr >=0.7'
   run:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowsom >=2.8.0,<2.9.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowsom >=2.10.0,<2.11.0'
     - r-base
     - r-cluster
     - r-fastcluster
diff --git a/recipes/bioconductor-metagene2/meta.yaml b/recipes/bioconductor-metagene2/meta.yaml
index 9fdcbd6880db6..7b828dbbaba57 100644
--- a/recipes/bioconductor-metagene2/meta.yaml
+++ b/recipes/bioconductor-metagene2/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "metagene2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 7b21feb21c30995a96cbec500bb9148a
+  md5: adef0ffd2a7cec30870a2b66eb2cb4f9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metagene2", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, RUnit, knitr, BiocStyle, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -37,13 +38,13 @@ requirements:
     - 'r-r6 >=2.0'
     - r-reshape2
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-data.table
     - r-dplyr
diff --git a/recipes/bioconductor-metagenomeseq/meta.yaml b/recipes/bioconductor-metagenomeseq/meta.yaml
index f415ce2a68608..73137c6fc52d9 100644
--- a/recipes/bioconductor-metagenomeseq/meta.yaml
+++ b/recipes/bioconductor-metagenomeseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.43.0" %}
 {% set name = "metagenomeSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 639ed9fe16c0bf887c363a66a1e8e5eb
+  md5: ea0139abb9cbcda1f445b3527e621345
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metagenomeseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, BiocGenerics, biomformat, knitr, gss, testthat (>= 0.8), vegan, interactiveDisplay, IHW
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-wrench >=1.18.0,<1.19.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-wrench >=1.20.0,<1.21.0'
     - r-base
     - r-foreach
     - r-glmnet
@@ -32,9 +33,9 @@ requirements:
     - r-matrixstats
     - r-rcolorbrewer
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-wrench >=1.18.0,<1.19.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-wrench >=1.20.0,<1.21.0'
     - r-base
     - r-foreach
     - r-glmnet
diff --git a/recipes/bioconductor-metagxbreast/meta.yaml b/recipes/bioconductor-metagxbreast/meta.yaml
index c75e7b63ed502..969e8d8c535ba 100644
--- a/recipes/bioconductor-metagxbreast/meta.yaml
+++ b/recipes/bioconductor-metagxbreast/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "MetaGxBreast" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 38b605d1c36990f9ae722ed9391afb75
+  md5: e711302482bca1429de5fe2e5276c788
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metagxbreast", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, xtable, tinytex
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-lattice
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-lattice
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-metagxbreast/post-link.sh b/recipes/bioconductor-metagxbreast/post-link.sh
index f778c7b5da540..e04b480c25fb1 100644
--- a/recipes/bioconductor-metagxbreast/post-link.sh
+++ b/recipes/bioconductor-metagxbreast/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "metagxbreast-1.20.0"
+installBiocDataPackage.sh "metagxbreast-1.22.0"
diff --git a/recipes/bioconductor-metagxovarian/meta.yaml b/recipes/bioconductor-metagxovarian/meta.yaml
index 7105fb8cdc088..a6cf76c8d62c9 100644
--- a/recipes/bioconductor-metagxovarian/meta.yaml
+++ b/recipes/bioconductor-metagxovarian/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "MetaGxOvarian" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 180366821492879a0fc25f4b4117b20f
+  md5: f76dc6c912d3a8936f81509ba6559286
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metagxovarian", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, xtable, rmarkdown, knitr, BiocStyle, markdown
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-lattice
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-lattice
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-metagxovarian/post-link.sh b/recipes/bioconductor-metagxovarian/post-link.sh
index d364690daf944..a592b878de955 100644
--- a/recipes/bioconductor-metagxovarian/post-link.sh
+++ b/recipes/bioconductor-metagxovarian/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "metagxovarian-1.20.0"
+installBiocDataPackage.sh "metagxovarian-1.22.0"
diff --git a/recipes/bioconductor-metagxpancreas/meta.yaml b/recipes/bioconductor-metagxpancreas/meta.yaml
index 2bb9483835525..0486ab5f27c80 100644
--- a/recipes/bioconductor-metagxpancreas/meta.yaml
+++ b/recipes/bioconductor-metagxpancreas/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "MetaGxPancreas" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 837617be22e87ee2716a5bd6888bb204
+  md5: 0c1764dc18a9a180b2121649c98a26a1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metagxpancreas", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, BiocStyle, rmarkdown, markdown
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-metagxpancreas/post-link.sh b/recipes/bioconductor-metagxpancreas/post-link.sh
index b2264e376b686..325b7237840e4 100644
--- a/recipes/bioconductor-metagxpancreas/post-link.sh
+++ b/recipes/bioconductor-metagxpancreas/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "metagxpancreas-1.20.0"
+installBiocDataPackage.sh "metagxpancreas-1.22.0"
diff --git a/recipes/bioconductor-metahdep/build_failure.osx-64.yaml b/recipes/bioconductor-metahdep/build_failure.osx-64.yaml
index a39539fdd7101..8f5e1414fd2f4 100644
--- a/recipes/bioconductor-metahdep/build_failure.osx-64.yaml
+++ b/recipes/bioconductor-metahdep/build_failure.osx-64.yaml
@@ -1,4 +1,4 @@
-recipe_sha: 2edfbb98f63d48d98994d4c4daecfd4678c9619a700efddca7297420a69e54f1  # The commit at which this recipe failed to build.
+recipe_sha: 7d681cfa3280b3e2180df68fba6a82a10dab63dfb65f81b7020b5d2b80a134a9  # The hash of the recipe's meta.yaml at which this recipe failed to build.
 skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
 log: |-
   F90=$PREFIX/bin/x86_64-apple-darwin13.4.0-gfortran
@@ -102,3 +102,7 @@ log: |-
       raise subprocess.CalledProcessError(proc.returncode, _args)
   subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/mambaforge/envs/bioconda/conda-bld/bioconductor-metahdep_1689833451644/work/conda_build.sh']' returned non-zero exit status 1.
 # Last 100 lines of the build log.
+reason: |-
+  19:17:50 BIOCONDA INFO (ERR) metahdep.c:471:79: error: incompatible pointer to integer conversion passing 'const char *' to parameter of type 'char' [-Wint-conversion]
+category: |-
+  compiler error
diff --git a/recipes/bioconductor-metahdep/meta.yaml b/recipes/bioconductor-metahdep/meta.yaml
index 42b9943246328..c8dc23a250052 100644
--- a/recipes/bioconductor-metahdep/meta.yaml
+++ b/recipes/bioconductor-metahdep/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.58.0" %}
+{% set version = "1.60.0" %}
 {% set name = "metahdep" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 3a49994338fecd947fd4e144745b4a39
+  md5: 578b66621982372185989aa8559f8293
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metahdep", max_pin="x.x") }}'
 # Suggests: affyPLM
 requirements:
   host:
diff --git a/recipes/bioconductor-metams/meta.yaml b/recipes/bioconductor-metams/meta.yaml
index 0551920c729ad..af42016d642d6 100644
--- a/recipes/bioconductor-metams/meta.yaml
+++ b/recipes/bioconductor-metams/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "metaMS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d64ce34b47d681fb1064f1ff93f320ed
+  md5: c26507515ab859aa42dbea4acc8cacc3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metams", max_pin="x.x") }}'
   noarch: generic
 # Suggests: metaMSdata, RUnit
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-camera >=1.56.0,<1.57.0'
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-camera >=1.58.0,<1.59.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-base
     - r-matrix
     - r-robustbase
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-camera >=1.56.0,<1.57.0'
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-camera >=1.58.0,<1.59.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-base
     - r-matrix
     - r-robustbase
diff --git a/recipes/bioconductor-metamsdata/meta.yaml b/recipes/bioconductor-metamsdata/meta.yaml
index 7d1d70162c264..b6730e4cfe2c3 100644
--- a/recipes/bioconductor-metamsdata/meta.yaml
+++ b/recipes/bioconductor-metamsdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "metaMSdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7c4408ceda2098402daaa6c94bbd3768
+  md5: aa7ca09c8f43104cb85f69fda0a1fc1a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metamsdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-metamsdata/post-link.sh b/recipes/bioconductor-metamsdata/post-link.sh
index c93f33a23616f..6e2a1a56a7ab7 100644
--- a/recipes/bioconductor-metamsdata/post-link.sh
+++ b/recipes/bioconductor-metamsdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "metamsdata-1.36.0"
+installBiocDataPackage.sh "metamsdata-1.38.0"
diff --git a/recipes/bioconductor-metaneighbor/meta.yaml b/recipes/bioconductor-metaneighbor/meta.yaml
index 67b3e6cb1a37b..cdd31dff18139 100644
--- a/recipes/bioconductor-metaneighbor/meta.yaml
+++ b/recipes/bioconductor-metaneighbor/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "MetaNeighbor" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2d8a02ccc2353f4a830b1a600e6cb070
+  md5: 4b42a5bac6ac46bdff32c5cce84e448d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metaneighbor", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr (>= 1.17), rmarkdown (>= 1.6), testthat (>= 1.0.2), UpSetR
 requirements:
   host:
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-beanplot >=1.2'
     - r-dplyr
@@ -35,8 +36,8 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-beanplot >=1.2'
     - r-dplyr
diff --git a/recipes/bioconductor-metaphor/meta.yaml b/recipes/bioconductor-metaphor/meta.yaml
index fb3841cdd3fe7..ee6d1a43d5289 100644
--- a/recipes/bioconductor-metaphor/meta.yaml
+++ b/recipes/bioconductor-metaphor/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "MetaPhOR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cd33f344dadc728d1802df7f7596818b
+  md5: 311e286126427130d127b23a77b3b6f4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metaphor", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, kableExtra
 # SystemRequirements: Cytoscape (>= 3.9.0) for the cytoPath() examples
 requirements:
   host:
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-rcy3 >=2.20.0,<2.21.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-rcy3 >=2.22.0,<2.23.0'
     - r-base
     - r-ggplot2
     - r-ggrepel
@@ -31,8 +32,8 @@ requirements:
     - r-recordlinkage
     - r-stringr
   run:
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-rcy3 >=2.20.0,<2.21.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-rcy3 >=2.22.0,<2.23.0'
     - r-base
     - r-ggplot2
     - r-ggrepel
diff --git a/recipes/bioconductor-metapod/meta.yaml b/recipes/bioconductor-metapod/meta.yaml
index 81f246e9c0d13..4f389d46291d7 100644
--- a/recipes/bioconductor-metapod/meta.yaml
+++ b/recipes/bioconductor-metapod/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "metapod" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: ed81a84b379501af983bb5c25262b63f
+  md5: 49bf3f5df3f99c0d4068224a8f51eacc
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metapod", max_pin="x.x") }}'
 # Suggests: testthat, knitr, BiocStyle, rmarkdown
 # SystemRequirements: C++11
 requirements:
@@ -42,3 +43,6 @@ about:
   description: 'Implements a variety of methods for combining p-values in differential analyses of genome-scale datasets. Functions can combine p-values across different tests in the same analysis (e.g., genomic windows in ChIP-seq, exons in RNA-seq) or for corresponding tests across separate analyses (e.g., replicated comparisons, effect of different treatment conditions). Support is provided for handling log-transformed input p-values, missing values and weighting where appropriate.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/bioconductor-metapone/meta.yaml b/recipes/bioconductor-metapone/meta.yaml
index f011d1814093c..491d13b08b3c4 100644
--- a/recipes/bioconductor-metapone/meta.yaml
+++ b/recipes/bioconductor-metapone/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "metapone" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 9a346aa647de2ac05f8f3494c5fa9c09
+  md5: d53938772148968f88fab10130dbc905
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metapone", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, knitr
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
     - r-base
     - r-fdrtool
     - r-fields
@@ -30,8 +31,8 @@ requirements:
     - r-ggrepel
     - r-markdown
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
     - r-base
     - r-fdrtool
     - r-fields
diff --git a/recipes/bioconductor-metascope/meta.yaml b/recipes/bioconductor-metascope/meta.yaml
index b0a892aca1284..4e41830dd7494 100644
--- a/recipes/bioconductor-metascope/meta.yaml
+++ b/recipes/bioconductor-metascope/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "MetaScope" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: aef272f5f78bc787f42bd9c47b923cfb
+  md5: 3e9dbacc12fa3bd332773ffa95325f0b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metascope", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BiocStyle, biomformat, knitr, lintr, plyr, rmarkdown, Rsubread, spelling, sys, testthat, usethis
+# Suggests: BiocStyle, biomformat, knitr, lintr, plyr, R.utils, rmarkdown, Rsubread, spelling, sys, testthat, usethis
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-rbowtie2 >=2.6.0,<2.7.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-rbowtie2 >=2.8.0,<2.9.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -35,20 +36,19 @@ requirements:
     - r-magrittr
     - r-matrix
     - r-qlcmatrix
-    - r-r.utils
     - r-readr
     - r-rlang
     - r-stringr
     - r-taxize
     - r-tidyr
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-rbowtie2 >=2.6.0,<2.7.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-rbowtie2 >=2.8.0,<2.9.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -56,14 +56,13 @@ requirements:
     - r-magrittr
     - r-matrix
     - r-qlcmatrix
-    - r-r.utils
     - r-readr
     - r-rlang
     - r-stringr
     - r-taxize
     - r-tidyr
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
@@ -71,6 +70,6 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/html/{{ name }}.html'
   license: 'GPL (>= 3)'
   summary: 'Tools and functions for preprocessing 16S and metagenomic sequencing microbiome data'
-  description: 'This package contains tools and methods for preprocessing microbiome data. Functionality includes library generation, demultiplexing, alignment, and microbe identification.  It is partly an R translation of the PathoScope 2.0 pipeline.'
+  description: 'This package contains tools and methods for preprocessing microbiome data. Functionality includes library generation, demultiplexing, alignment, and microbe identification.  It is in part an R translation of the PathoScope 2.0 pipeline.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
diff --git a/recipes/bioconductor-metascope/post-link.sh b/recipes/bioconductor-metascope/post-link.sh
index f94aeef0d0954..e3bd6b90fb0e0 100644
--- a/recipes/bioconductor-metascope/post-link.sh
+++ b/recipes/bioconductor-metascope/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "metascope-1.0.0"
+installBiocDataPackage.sh "metascope-1.2.0"
diff --git a/recipes/bioconductor-metaseq/meta.yaml b/recipes/bioconductor-metaseq/meta.yaml
index c229f390a9ea5..8aafac7b3bdf8 100644
--- a/recipes/bioconductor-metaseq/meta.yaml
+++ b/recipes/bioconductor-metaseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "metaSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7805af79576c88c0861543ebb4b731a0
+  md5: 8c3ee60501395cc86ecda6817d0d5439
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metaseq", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-noiseq >=2.44.0,<2.45.0'
+    - 'bioconductor-noiseq >=2.46.0,<2.47.0'
     - r-base
     - r-rcpp
     - r-snow
     - libblas
     - liblapack
   run:
-    - 'bioconductor-noiseq >=2.44.0,<2.45.0'
+    - 'bioconductor-noiseq >=2.46.0,<2.47.0'
     - r-base
     - r-rcpp
     - r-snow
@@ -42,6 +43,8 @@ about:
   summary: 'Meta-analysis of RNA-Seq count data in multiple studies'
   description: 'The probabilities by one-sided NOISeq are combined by Fisher''s method or Stouffer''s method'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:metaseq
     - doi:10.1038/nmeth.3252
diff --git a/recipes/bioconductor-metcirc/meta.yaml b/recipes/bioconductor-metcirc/meta.yaml
index 89b5bb1a95cba..c70232ee98cfa 100644
--- a/recipes/bioconductor-metcirc/meta.yaml
+++ b/recipes/bioconductor-metcirc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "MetCirc" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 420d7e30089b00444306978ccac47184
+  md5: c21a385245acf6911f5c762093ea6e0b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metcirc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, graphics (>= 3.5), grDevices (>= 3.5), knitr (>= 1.11), testthat (>= 2.2.1)
 requirements:
   host:
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-spectra >=1.10.0,<1.11.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spectra >=1.12.0,<1.13.0'
     - 'r-amap >=0.8'
     - r-base
     - 'r-circlize >=0.3.9'
@@ -31,9 +32,9 @@ requirements:
     - 'r-scales >=0.3.0'
     - 'r-shiny >=1.0.0'
   run:
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-spectra >=1.10.0,<1.11.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spectra >=1.12.0,<1.13.0'
     - 'r-amap >=0.8'
     - r-base
     - 'r-circlize >=0.3.9'
diff --git a/recipes/bioconductor-methimpute/meta.yaml b/recipes/bioconductor-methimpute/meta.yaml
index 110306a836ace..65d687e154683 100644
--- a/recipes/bioconductor-methimpute/meta.yaml
+++ b/recipes/bioconductor-methimpute/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "methimpute" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: edb7a53f8b002f4b0d135381af736420
+  md5: 7b2a598d7391c33c4ba82639616077e6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-methimpute", max_pin="x.x") }}'
 # Suggests: knitr, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-data.table
     - r-ggplot2
@@ -33,10 +34,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-data.table
     - r-ggplot2
diff --git a/recipes/bioconductor-methinheritsim/meta.yaml b/recipes/bioconductor-methinheritsim/meta.yaml
index e17311bc74346..d131c38563f89 100644
--- a/recipes/bioconductor-methinheritsim/meta.yaml
+++ b/recipes/bioconductor-methinheritsim/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "methInheritSim" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e84fe101c5de73da2e8764b71ec3e467
+  md5: c695628dcb686ee7e6a3f4ee134481ff
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-methinheritsim", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, RUnit, methylInheritance
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-methylkit >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-methylkit >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-msm
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-methylkit >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-methylkit >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-msm
 test:
diff --git a/recipes/bioconductor-methped/meta.yaml b/recipes/bioconductor-methped/meta.yaml
index 1d52a997eacd3..ab47c7a890944 100644
--- a/recipes/bioconductor-methped/meta.yaml
+++ b/recipes/bioconductor-methped/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "MethPed" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b811e3dcc16dd85f75fc300602d99845
+  md5: 57b633da5d8548342b0a2071efe3c04d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-methped", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, markdown, impute
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-randomforest
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-randomforest
 test:
diff --git a/recipes/bioconductor-methreg/meta.yaml b/recipes/bioconductor-methreg/meta.yaml
index 59fcc9250f4b5..639722859e243 100644
--- a/recipes/bioconductor-methreg/meta.yaml
+++ b/recipes/bioconductor-methreg/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "MethReg" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 33bbfd93bde253c973cc8324e4475bde
+  md5: 0c092ea7b8883b6c125e64e16030bca6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-methreg", max_pin="x.x") }}'
   noarch: generic
-# Suggests: rmarkdown, BiocStyle, testthat (>= 2.1.0), parallel, downloader, R.utils, doParallel, reshape2, JASPAR2022, TFBSTools, motifmatchr, matrixStats, biomaRt, dorothea, viper, stageR, BiocFileCache, png, htmltools, knitr, jpeg, BSgenome.Hsapiens.UCSC.hg38, BSgenome.Hsapiens.UCSC.hg19
+# Suggests: rmarkdown, BiocStyle, testthat (>= 2.1.0), parallel, downloader, R.utils, doParallel, reshape2, JASPAR2022, TFBSTools, motifmatchr, matrixStats, biomaRt, dorothea, viper, stageR, BiocFileCache, png, htmltools, knitr, jpeg, BSgenome.Hsapiens.UCSC.hg38, BSgenome.Hsapiens.UCSC.hg19, openxlsx, data.table, downloader
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-sesame >=1.18.0,<1.19.0'
-    - 'bioconductor-sesamedata >=1.18.0,<1.19.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-sesame >=1.20.0,<1.21.0'
+    - 'bioconductor-sesamedata >=1.20.0,<1.21.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -46,15 +47,15 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-sesame >=1.18.0,<1.19.0'
-    - 'bioconductor-sesamedata >=1.18.0,<1.19.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-sesame >=1.20.0,<1.21.0'
+    - 'bioconductor-sesamedata >=1.20.0,<1.21.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-methrix/meta.yaml b/recipes/bioconductor-methrix/meta.yaml
index 5f837225e9e2f..bd7c11532203f 100644
--- a/recipes/bioconductor-methrix/meta.yaml
+++ b/recipes/bioconductor-methrix/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "methrix" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,37 +11,40 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 8e0de73ac035291e3328e4157b193997
+  md5: 7bdda59fc802fc09d10ca9a4916cfe94
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-methrix", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr, rmarkdown, DSS, bsseq, plotly, BSgenome.Mmusculus.UCSC.mm9, MafDb.1Kgenomes.phase3.GRCh38, MafDb.1Kgenomes.phase3.hs37d5, GenomicScores, Biostrings, RColorBrewer, GenomeInfoDb, testthat (>= 2.1.0)
+# Suggests: knitr, rmarkdown, DSS, bsseq, plotly, BSgenome.Mmusculus.UCSC.mm9, MafDb.1Kgenomes.phase3.GRCh38, MafDb.1Kgenomes.phase3.hs37d5, BSgenome.Hsapiens.UCSC.hg19, GenomicScores, Biostrings, RColorBrewer, GenomeInfoDb, testthat (>= 2.1.0)
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-data.table >=1.12.4'
     - r-ggplot2
     - r-matrixstats
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-data.table >=1.12.4'
     - r-ggplot2
diff --git a/recipes/bioconductor-methtargetedngs/meta.yaml b/recipes/bioconductor-methtargetedngs/meta.yaml
index 6193170be0067..fb49f0aa6445e 100644
--- a/recipes/bioconductor-methtargetedngs/meta.yaml
+++ b/recipes/bioconductor-methtargetedngs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "MethTargetedNGS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c6777e1517295425bd1b7e6763d58793
+  md5: 0bce9edc9682a9ca23653409301d7225
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-methtargetedngs", max_pin="x.x") }}'
   noarch: generic
 # SystemRequirements: HMMER3
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - r-gplots
     - r-seqinr
     - r-stringr
     - 'hmmer >=3'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - r-gplots
     - r-seqinr
diff --git a/recipes/bioconductor-methylaid/meta.yaml b/recipes/bioconductor-methylaid/meta.yaml
index 11cefa78cfba2..d6bdffb88c0f7 100644
--- a/recipes/bioconductor-methylaid/meta.yaml
+++ b/recipes/bioconductor-methylaid/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "MethylAid" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c8f44cf538be4d026ac332365de6063c
+  md5: 8e5139726d6384208be410a794ba6388
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-methylaid", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, MethylAidData, minfiData, minfiDataEPIC, RUnit
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-gridbase
@@ -34,11 +35,11 @@ requirements:
     - r-rcolorbrewer
     - r-shiny
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-gridbase
diff --git a/recipes/bioconductor-methylaiddata/meta.yaml b/recipes/bioconductor-methylaiddata/meta.yaml
index 2c6f2f3bc4f90..9d93dbaa10899 100644
--- a/recipes/bioconductor-methylaiddata/meta.yaml
+++ b/recipes/bioconductor-methylaiddata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "MethylAidData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 43ab55538e535cab63f2594898cfbda4
+  md5: 95cc72b436067e4a8046564381101e04
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-methylaiddata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocParallel, BiocStyle, knitr, minfiData, minfiDataEPIC
 requirements:
   host:
-    - 'bioconductor-methylaid >=1.34.0,<1.35.0'
+    - 'bioconductor-methylaid >=1.36.0,<1.37.0'
     - r-base
   run:
-    - 'bioconductor-methylaid >=1.34.0,<1.35.0'
+    - 'bioconductor-methylaid >=1.36.0,<1.37.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-methylaiddata/post-link.sh b/recipes/bioconductor-methylaiddata/post-link.sh
index bfc7879f10589..05ddd59e85e4c 100644
--- a/recipes/bioconductor-methylaiddata/post-link.sh
+++ b/recipes/bioconductor-methylaiddata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "methylaiddata-1.32.0"
+installBiocDataPackage.sh "methylaiddata-1.34.0"
diff --git a/recipes/bioconductor-methylcc/meta.yaml b/recipes/bioconductor-methylcc/meta.yaml
index ef779d73a8837..55e496807a54b 100644
--- a/recipes/bioconductor-methylcc/meta.yaml
+++ b/recipes/bioconductor-methylcc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "methylCC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,45 +11,46 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f599be86fb37a9d8f95f7e3113facccb
+  md5: 77566e7338f615ca5305d6e00465908b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-methylcc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, knitr, testthat (>= 2.1.0), BiocGenerics, BiocStyle, tidyr, ggplot2
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-bsseq >=1.36.0,<1.37.0'
-    - 'bioconductor-bumphunter >=1.42.0,<1.43.0'
-    - 'bioconductor-flowsorted.blood.450k >=1.38.0,<1.39.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-bsseq >=1.38.0,<1.39.0'
+    - 'bioconductor-bumphunter >=1.44.0,<1.45.0'
+    - 'bioconductor-flowsorted.blood.450k >=1.40.0,<1.41.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-plyranges >=1.20.0,<1.21.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-magrittr
     - r-quadprog
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-bsseq >=1.36.0,<1.37.0'
-    - 'bioconductor-bumphunter >=1.42.0,<1.43.0'
-    - 'bioconductor-flowsorted.blood.450k >=1.38.0,<1.39.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-bsseq >=1.38.0,<1.39.0'
+    - 'bioconductor-bumphunter >=1.44.0,<1.45.0'
+    - 'bioconductor-flowsorted.blood.450k >=1.40.0,<1.41.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-plyranges >=1.20.0,<1.21.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-magrittr
diff --git a/recipes/bioconductor-methylclock/meta.yaml b/recipes/bioconductor-methylclock/meta.yaml
index 981a365aa2e6a..16024462c189f 100644
--- a/recipes/bioconductor-methylclock/meta.yaml
+++ b/recipes/bioconductor-methylclock/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "methylclock" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 770a4eeb0cb8da839fe57d6a42e317c3
+  md5: b6151e23d6086f38d6489dcc277c81c9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-methylclock", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, GEOquery, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-methylclockdata >=1.8.0,<1.9.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-planet >=1.8.0,<1.9.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-methylclockdata >=1.10.0,<1.11.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-planet >=1.10.0,<1.11.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-devtools
     - r-dplyr
@@ -45,13 +46,13 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-methylclockdata >=1.8.0,<1.9.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-planet >=1.8.0,<1.9.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-methylclockdata >=1.10.0,<1.11.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-planet >=1.10.0,<1.11.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-devtools
     - r-dplyr
diff --git a/recipes/bioconductor-methylclockdata/meta.yaml b/recipes/bioconductor-methylclockdata/meta.yaml
index 0f81c2bd0f5c3..771be08cf1782 100644
--- a/recipes/bioconductor-methylclockdata/meta.yaml
+++ b/recipes/bioconductor-methylclockdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.1" %}
+{% set version = "1.10.0" %}
 {% set name = "methylclockData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c211da6ed8d39ba8cee6d4d630691bad
+  md5: 633d9cc6c028025090e12004484fada1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-methylclockdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, rmarkdown
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-experimenthubdata >=1.26.0,<1.27.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-experimenthubdata >=1.28.0,<1.29.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-experimenthubdata >=1.26.0,<1.27.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-experimenthubdata >=1.28.0,<1.29.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230717
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-methylclockdata/post-link.sh b/recipes/bioconductor-methylclockdata/post-link.sh
index 744cc5a5c07e4..16f98ea792eb3 100644
--- a/recipes/bioconductor-methylclockdata/post-link.sh
+++ b/recipes/bioconductor-methylclockdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "methylclockdata-1.8.1"
+installBiocDataPackage.sh "methylclockdata-1.10.0"
diff --git a/recipes/bioconductor-methylgsa/meta.yaml b/recipes/bioconductor-methylgsa/meta.yaml
index d10d0d4ad8fc6..9858e7286e22e 100644
--- a/recipes/bioconductor-methylgsa/meta.yaml
+++ b/recipes/bioconductor-methylgsa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "methylGSA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,40 +11,41 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c9287c45585ad0f59e2dc67c738a787e
+  md5: e802fab6abc1a9bac64bc36dd588c19d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-methylgsa", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, enrichplot
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
     - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19 >=0.6.0,<0.7.0'
-    - 'bioconductor-missmethyl >=1.34.0,<1.35.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-reactome.db >=1.84.0,<1.85.0'
+    - 'bioconductor-missmethyl >=1.36.0,<1.37.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-reactome.db >=1.86.0,<1.87.0'
     - r-base
     - r-ggplot2
     - r-robustrankaggreg
     - r-shiny
     - r-stringr
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
     - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19 >=0.6.0,<0.7.0'
-    - 'bioconductor-missmethyl >=1.34.0,<1.35.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-reactome.db >=1.84.0,<1.85.0'
+    - 'bioconductor-missmethyl >=1.36.0,<1.37.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-reactome.db >=1.86.0,<1.87.0'
     - r-base
     - r-ggplot2
     - r-robustrankaggreg
diff --git a/recipes/bioconductor-methylinheritance/meta.yaml b/recipes/bioconductor-methylinheritance/meta.yaml
index 6041af6f4b285..c3fcbcbda2b35 100644
--- a/recipes/bioconductor-methylinheritance/meta.yaml
+++ b/recipes/bioconductor-methylinheritance/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "methylInheritance" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ed652748487f26ee71332e443e3f3a80
+  md5: 0242605800daea10c810fa356cb2cf0c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-methylinheritance", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, BiocGenerics, knitr, rmarkdown, RUnit, methInheritSim
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-methylkit >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-methylkit >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - r-gridextra
     - r-rebus
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-methylkit >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-methylkit >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - r-gridextra
diff --git a/recipes/bioconductor-methylkit/meta.yaml b/recipes/bioconductor-methylkit/meta.yaml
index 7582763615f42..a0eb42e2b27ef 100644
--- a/recipes/bioconductor-methylkit/meta.yaml
+++ b/recipes/bioconductor-methylkit/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "methylKit" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 37ac13b36487394b54e843d5f0b1c4d3
+  md5: 5e21ca2558b439a2f542492eeec0f99d
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-methylkit", max_pin="x.x") }}'
 # Suggests: testthat (>= 2.1.0), knitr, rmarkdown, genomation, BiocManager
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-fastseg >=1.46.0,<1.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-fastseg >=1.48.0,<1.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - 'r-data.table >=1.9.6'
     - r-emdbook
@@ -44,17 +45,17 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-fastseg >=1.46.0,<1.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-fastseg >=1.48.0,<1.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - 'r-data.table >=1.9.6'
     - r-emdbook
@@ -77,6 +78,8 @@ about:
   summary: 'DNA methylation analysis from high-throughput bisulfite sequencing results'
   description: 'methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods and whole genome bisulfite sequencing. It also has functions to analyze base-pair resolution 5hmC data from experimental protocols such as oxBS-Seq and TAB-Seq. Methylation calling can be performed directly from Bismark aligned BAM files.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:methylkit
   parent_recipe:
diff --git a/recipes/bioconductor-methylmix/meta.yaml b/recipes/bioconductor-methylmix/meta.yaml
index 83ed80dadb3c8..80533398aa225 100644
--- a/recipes/bioconductor-methylmix/meta.yaml
+++ b/recipes/bioconductor-methylmix/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.30.0" %}
+{% set version = "2.32.0" %}
 {% set name = "MethylMix" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 752979d4cb82fa14d6408b323f93005f
+  md5: 4a716254f6aff8e65daf63cdcd939704
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-methylmix", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, doParallel, testthat, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-data.table
     - r-digest
@@ -33,8 +34,8 @@ requirements:
     - r-rcurl
     - r-rpmm
   run:
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-data.table
     - r-digest
diff --git a/recipes/bioconductor-methylmnm/meta.yaml b/recipes/bioconductor-methylmnm/meta.yaml
index 233e752251688..ffae70e36fd4a 100644
--- a/recipes/bioconductor-methylmnm/meta.yaml
+++ b/recipes/bioconductor-methylmnm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "methylMnM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: dfc25779d379687166c7a894b52086eb
+  md5: 3d6c83c4fa30daea5b1c91e70f67c6b5
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-methylmnm", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
     - r-base
     - r-statmod
     - libblas
     - liblapack
   run:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
     - r-base
     - r-statmod
   build:
@@ -36,11 +37,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-3
+  license: GPL-3.0-only
   summary: 'detect different methylation level (DMR)'
   description: 'To give the exactly p-value and q-value of MeDIP-seq and MRE-seq data for different samples comparation.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:methylmnm
     - doi:10.1101/gr.156539.113
diff --git a/recipes/bioconductor-methylpipe/meta.yaml b/recipes/bioconductor-methylpipe/meta.yaml
index d49eb3e1ee37f..fe35aeaa5f55b 100644
--- a/recipes/bioconductor-methylpipe/meta.yaml
+++ b/recipes/bioconductor-methylpipe/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.1" %}
+{% set version = "1.36.0" %}
 {% set name = "methylPipe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,43 +11,44 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9fc26ce4cc91e60ef63712f165615294
+  md5: bd41f308a3d5e58c4e05ce38c28f17f9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-methylpipe", max_pin="x.x") }}'
 # Suggests: BSgenome.Hsapiens.UCSC.hg18, TxDb.Hsapiens.UCSC.hg18.knownGene, knitr, MethylSeekR
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-gplots
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-gplots
diff --git a/recipes/bioconductor-methylscaper/meta.yaml b/recipes/bioconductor-methylscaper/meta.yaml
index 9ccf2ccb044a2..2dd87a797efc1 100644
--- a/recipes/bioconductor-methylscaper/meta.yaml
+++ b/recipes/bioconductor-methylscaper/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.4" %}
+{% set version = "1.10.0" %}
 {% set name = "methylscaper" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c2bae24f7f0fd7284a2faf5f6fea4f09
+  md5: 0fae72e2aac98ec4a55d8aa4343039ba
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-methylscaper", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, devtools, R.utils
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-rfast
@@ -33,9 +34,9 @@ requirements:
     - r-shinyfiles
     - r-shinyjs
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-rfast
diff --git a/recipes/bioconductor-methylseekr/meta.yaml b/recipes/bioconductor-methylseekr/meta.yaml
index 4c02b0e12be43..49c54a3395fbc 100644
--- a/recipes/bioconductor-methylseekr/meta.yaml
+++ b/recipes/bioconductor-methylseekr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "MethylSeekR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9caa87128143195fc74e45aea4c58142
+  md5: 02bba9cfe7502e55a26e0ac76ba63457
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-methylseekr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Hsapiens.UCSC.hg18
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-geneplotter >=1.78.0,<1.79.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-geneplotter >=1.80.0,<1.81.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - 'r-mhsmm >=0.4.4'
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-geneplotter >=1.78.0,<1.79.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-geneplotter >=1.80.0,<1.81.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - 'r-mhsmm >=0.4.4'
 test:
diff --git a/recipes/bioconductor-methylseqdata/meta.yaml b/recipes/bioconductor-methylseqdata/meta.yaml
index 145e934653d1d..136355ee746c8 100644
--- a/recipes/bioconductor-methylseqdata/meta.yaml
+++ b/recipes/bioconductor-methylseqdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "MethylSeqData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,37 +11,38 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d1a6bd69401032cbdba32519c02fdf4c
+  md5: ded280784f55a6ebec42069160de26ad
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-methylseqdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocFileCache, BiocStyle, data.table, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-methylseqdata/post-link.sh b/recipes/bioconductor-methylseqdata/post-link.sh
index 7de3f110ab6e7..a095ba9151fb9 100644
--- a/recipes/bioconductor-methylseqdata/post-link.sh
+++ b/recipes/bioconductor-methylseqdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "methylseqdata-1.10.0"
+installBiocDataPackage.sh "methylseqdata-1.12.0"
diff --git a/recipes/bioconductor-methylumi/meta.yaml b/recipes/bioconductor-methylumi/meta.yaml
index 422e651866f92..52c8312d6006e 100644
--- a/recipes/bioconductor-methylumi/meta.yaml
+++ b/recipes/bioconductor-methylumi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.46.0" %}
+{% set version = "2.48.0" %}
 {% set name = "methylumi" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 19a426ce620cab5722a42b3ab54c3ac7
+  md5: eb3792c8c9c2a778cf41e9bb7b95232b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-methylumi", max_pin="x.x") }}'
   noarch: generic
 # Suggests: lumi, lattice, limma, xtable, SQN, MASS, matrixStats, parallel, rtracklayer, Biostrings, TCGAMethylation450k, IlluminaHumanMethylation450kanno.ilmn12.hg19, FDb.InfiniumMethylation.hg18 (>= 2.2.0), Homo.sapiens, knitr
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - 'bioconductor-fdb.infiniummethylation.hg19 >=2.2.0,<2.3.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-illuminaio >=0.42.0,<0.43.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-illuminaio >=0.44.0,<0.45.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-lattice
@@ -42,20 +43,20 @@ requirements:
     - r-reshape2
     - r-scales
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - 'bioconductor-fdb.infiniummethylation.hg19 >=2.2.0,<2.3.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-illuminaio >=0.42.0,<0.43.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-illuminaio >=0.44.0,<0.45.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-lattice
diff --git a/recipes/bioconductor-metid/meta.yaml b/recipes/bioconductor-metid/meta.yaml
index 0fc4c8446b6e2..3b7cbc31f2086 100644
--- a/recipes/bioconductor-metid/meta.yaml
+++ b/recipes/bioconductor-metid/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "MetID" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 80066250bcfc764f96ff4f3d3aed3154
+  md5: 873920da0ab3c4e6a3bcd9e580097b86
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metid", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr (>= 1.19), rmarkdown (>= 1.8)
 requirements:
   host:
-    - 'bioconductor-chemminer >=3.52.0,<3.53.0'
+    - 'bioconductor-chemminer >=3.54.0,<3.55.0'
     - r-base
     - 'r-devtools >=1.13.0'
     - 'r-igraph >=1.2.1'
     - 'r-matrix >=1.2-12'
     - 'r-stringr >=1.3.0'
   run:
-    - 'bioconductor-chemminer >=3.52.0,<3.53.0'
+    - 'bioconductor-chemminer >=3.54.0,<3.55.0'
     - r-base
     - 'r-devtools >=1.13.0'
     - 'r-igraph >=1.2.1'
diff --git a/recipes/bioconductor-metnet/meta.yaml b/recipes/bioconductor-metnet/meta.yaml
index e1de4c58763cb..78ede31d4fedc 100644
--- a/recipes/bioconductor-metnet/meta.yaml
+++ b/recipes/bioconductor-metnet/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "MetNet" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 67d052b6ddc20ce093c5205bd21113c4
+  md5: 0e03ec28e1272f094758907923a0226f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-metnet", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics (>= 0.24.0), BiocStyle (>= 2.6.1), glmnet (>= 4.1-1), igraph (>= 1.1.2), knitr (>= 1.11), rmarkdown (>= 1.15), testthat (>= 2.2.1), Spectra (>= 1.4.1), MsCoreUtils (>= 1.6.0)
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genie3 >=1.22.0,<1.23.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genie3 >=1.24.0,<1.25.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-bnlearn >=4.3'
     - 'r-corpcor >=1.6.10'
@@ -38,10 +39,10 @@ requirements:
     - 'r-tibble >=3.0.5'
     - 'r-tidyr >=1.1.2'
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genie3 >=1.22.0,<1.23.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genie3 >=1.24.0,<1.25.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-bnlearn >=4.3'
     - 'r-corpcor >=1.6.10'
diff --git a/recipes/bioconductor-mfa/meta.yaml b/recipes/bioconductor-mfa/meta.yaml
index 1986448c2f204..5da35eaca5908 100644
--- a/recipes/bioconductor-mfa/meta.yaml
+++ b/recipes/bioconductor-mfa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "mfa" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,16 +11,17 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: a47205412204ffd49737d41b7b78574d
+  md5: 37fa2e82d83636458e9a20cc72069dcd
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mfa", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, BiocStyle, testthat
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-coda
     - r-dplyr
@@ -34,7 +35,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-coda
     - r-dplyr
diff --git a/recipes/bioconductor-mfuzz/meta.yaml b/recipes/bioconductor-mfuzz/meta.yaml
index 3a69ac72e50d2..a85698f9f0ed3 100644
--- a/recipes/bioconductor-mfuzz/meta.yaml
+++ b/recipes/bioconductor-mfuzz/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.60.0" %}
+{% set version = "2.62.0" %}
 {% set name = "Mfuzz" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8997e343fab679b0005f7cb9eb95be1d
+  md5: 03a765bd452d34b166f85cdfee8063ae
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mfuzz", max_pin="x.x") }}'
   noarch: generic
 # Suggests: marray
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-tkwidgets >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-tkwidgets >=1.80.0,<1.81.0'
     - r-base
     - r-e1071
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-tkwidgets >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-tkwidgets >=1.80.0,<1.81.0'
     - r-base
     - r-e1071
 test:
diff --git a/recipes/bioconductor-mgfm/meta.yaml b/recipes/bioconductor-mgfm/meta.yaml
index 1212b35df01a2..7b05b8cea6a81 100644
--- a/recipes/bioconductor-mgfm/meta.yaml
+++ b/recipes/bioconductor-mgfm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "MGFM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 87e2aeabf70fe5c98af8b31fc7eb87a8
+  md5: 893a9f574fe4e023d3c4d3b99d58ae78
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mgfm", max_pin="x.x") }}'
   noarch: generic
 # Suggests: hgu133a.db
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-mgfr/meta.yaml b/recipes/bioconductor-mgfr/meta.yaml
index 48dfafef2cb6b..988ffb8e7853e 100644
--- a/recipes/bioconductor-mgfr/meta.yaml
+++ b/recipes/bioconductor-mgfr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "MGFR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1b2461c46ec06a15eb25e35e645a9332
+  md5: 73cad34ad523499dbdcfb3746b519b48
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mgfr", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
     - r-base
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-mgsa/meta.yaml b/recipes/bioconductor-mgsa/meta.yaml
index f3f84f49ee018..b41a7de444713 100644
--- a/recipes/bioconductor-mgsa/meta.yaml
+++ b/recipes/bioconductor-mgsa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "mgsa" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 29e5cee310a2610a0167f448d39c0206
+  md5: 1a0667a9a3b9c3e973a47a49249b08db
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mgsa", max_pin="x.x") }}'
 # Suggests: DBI, RSQLite, GO.db, testthat
 requirements:
   host:
@@ -40,6 +41,8 @@ about:
   summary: 'Model-based gene set analysis'
   description: 'Model-based Gene Set Analysis (MGSA) is a Bayesian modeling approach for gene set enrichment. The package mgsa implements MGSA and tools to use MGSA together with the Gene Ontology.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:mgsa
     - doi:10.1093/nar/gkq045
diff --git a/recipes/bioconductor-mgu74a.db/meta.yaml b/recipes/bioconductor-mgu74a.db/meta.yaml
index 5282b2deaa29a..c2dd2b0ae3b6f 100644
--- a/recipes/bioconductor-mgu74a.db/meta.yaml
+++ b/recipes/bioconductor-mgu74a.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "mgu74a.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 9fb75c159c50e2ae316ee5a8abe1a48c
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mgu74a.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mgu74acdf/meta.yaml b/recipes/bioconductor-mgu74acdf/meta.yaml
index 790af0f291883..6d1e5d9376af7 100644
--- a/recipes/bioconductor-mgu74acdf/meta.yaml
+++ b/recipes/bioconductor-mgu74acdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mgu74acdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: ed6e86398e51c7b0ddca4431797ecbc0
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mgu74acdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mgu74aprobe/meta.yaml b/recipes/bioconductor-mgu74aprobe/meta.yaml
index e82292a4a259d..01606e9b7cee0 100644
--- a/recipes/bioconductor-mgu74aprobe/meta.yaml
+++ b/recipes/bioconductor-mgu74aprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mgu74aprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 7fea6d44856203e6293e0cd9fe1ad066
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mgu74aprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mgu74av2.db/meta.yaml b/recipes/bioconductor-mgu74av2.db/meta.yaml
index b67f4f55511e5..405b9aa9777a8 100644
--- a/recipes/bioconductor-mgu74av2.db/meta.yaml
+++ b/recipes/bioconductor-mgu74av2.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "mgu74av2.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 3205856d0c7725acded5238415e907bc
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mgu74av2.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mgu74av2cdf/meta.yaml b/recipes/bioconductor-mgu74av2cdf/meta.yaml
index d066d7b144da8..e72145c2c0482 100644
--- a/recipes/bioconductor-mgu74av2cdf/meta.yaml
+++ b/recipes/bioconductor-mgu74av2cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mgu74av2cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 35e2abb9fbfd68d90dc32a2faae00c95
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mgu74av2cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mgu74av2probe/meta.yaml b/recipes/bioconductor-mgu74av2probe/meta.yaml
index 0caa9eac2a672..8e2e4ecec00f0 100644
--- a/recipes/bioconductor-mgu74av2probe/meta.yaml
+++ b/recipes/bioconductor-mgu74av2probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mgu74av2probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: ac540b0e26b14a411740233b02d3e11c
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mgu74av2probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mgu74b.db/meta.yaml b/recipes/bioconductor-mgu74b.db/meta.yaml
index 7d8d7d5a2a75c..3063cdc54e8e1 100644
--- a/recipes/bioconductor-mgu74b.db/meta.yaml
+++ b/recipes/bioconductor-mgu74b.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "mgu74b.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 205577a6e41d56910f221ffb940ee25b
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mgu74b.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mgu74bcdf/meta.yaml b/recipes/bioconductor-mgu74bcdf/meta.yaml
index bf1d3d00be458..f44812422b044 100644
--- a/recipes/bioconductor-mgu74bcdf/meta.yaml
+++ b/recipes/bioconductor-mgu74bcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mgu74bcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: a1f0f98f29d34a421622447252113e1e
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mgu74bcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mgu74bprobe/meta.yaml b/recipes/bioconductor-mgu74bprobe/meta.yaml
index db2bc9262a391..29fd25ee76e40 100644
--- a/recipes/bioconductor-mgu74bprobe/meta.yaml
+++ b/recipes/bioconductor-mgu74bprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mgu74bprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 224d606e6fc87592d387dbaabe5cd353
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mgu74bprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mgu74bv2.db/meta.yaml b/recipes/bioconductor-mgu74bv2.db/meta.yaml
index a686c73cb696c..84c103d1c0982 100644
--- a/recipes/bioconductor-mgu74bv2.db/meta.yaml
+++ b/recipes/bioconductor-mgu74bv2.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "mgu74bv2.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 4ec0fbed7343f0578ef11e2330d0d12a
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mgu74bv2.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mgu74bv2cdf/meta.yaml b/recipes/bioconductor-mgu74bv2cdf/meta.yaml
index 40247022fe1d4..1e5b584de6c4a 100644
--- a/recipes/bioconductor-mgu74bv2cdf/meta.yaml
+++ b/recipes/bioconductor-mgu74bv2cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mgu74bv2cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 45c48d11af03633dc10f8682b7ad74c5
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mgu74bv2cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mgu74bv2probe/meta.yaml b/recipes/bioconductor-mgu74bv2probe/meta.yaml
index 3f5bfd9f4b642..2c0bd49a0fabb 100644
--- a/recipes/bioconductor-mgu74bv2probe/meta.yaml
+++ b/recipes/bioconductor-mgu74bv2probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mgu74bv2probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: f6a12f88ea3c43a3e885c7e9b3fd03d2
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mgu74bv2probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mgu74c.db/meta.yaml b/recipes/bioconductor-mgu74c.db/meta.yaml
index ae87a17b48e1b..f645da667a7cf 100644
--- a/recipes/bioconductor-mgu74c.db/meta.yaml
+++ b/recipes/bioconductor-mgu74c.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "mgu74c.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 6c4f183e6ed5f0b5735596e7544746ae
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mgu74c.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mgu74ccdf/meta.yaml b/recipes/bioconductor-mgu74ccdf/meta.yaml
index 2b1644415aad6..80c910bd5ffb7 100644
--- a/recipes/bioconductor-mgu74ccdf/meta.yaml
+++ b/recipes/bioconductor-mgu74ccdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mgu74ccdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 172e626b0e3072edc65c4efff35fe998
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mgu74ccdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mgu74cprobe/meta.yaml b/recipes/bioconductor-mgu74cprobe/meta.yaml
index 38cf65f888fc5..2e2b2ca35ed51 100644
--- a/recipes/bioconductor-mgu74cprobe/meta.yaml
+++ b/recipes/bioconductor-mgu74cprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mgu74cprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 186992992708f0071fd552ef92b9e25c
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mgu74cprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mgu74cv2.db/meta.yaml b/recipes/bioconductor-mgu74cv2.db/meta.yaml
index 3175d01f69550..997784f9be6fd 100644
--- a/recipes/bioconductor-mgu74cv2.db/meta.yaml
+++ b/recipes/bioconductor-mgu74cv2.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "mgu74cv2.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 1f860dfbf4400ede54eb30d9a70ec131
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mgu74cv2.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mgu74cv2cdf/meta.yaml b/recipes/bioconductor-mgu74cv2cdf/meta.yaml
index bfe25f12a1f9d..e03108fc7e228 100644
--- a/recipes/bioconductor-mgu74cv2cdf/meta.yaml
+++ b/recipes/bioconductor-mgu74cv2cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mgu74cv2cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 9ef62b4b28f97770859db24393a07ed5
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mgu74cv2cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mgu74cv2probe/meta.yaml b/recipes/bioconductor-mgu74cv2probe/meta.yaml
index 957ceff230bbe..ca9038a77b902 100644
--- a/recipes/bioconductor-mgu74cv2probe/meta.yaml
+++ b/recipes/bioconductor-mgu74cv2probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mgu74cv2probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 0373496c817a1c1a153114047cfa7c5b
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mgu74cv2probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mguatlas5k.db/meta.yaml b/recipes/bioconductor-mguatlas5k.db/meta.yaml
index 7f8f9eb126727..22485ecde8e5b 100644
--- a/recipes/bioconductor-mguatlas5k.db/meta.yaml
+++ b/recipes/bioconductor-mguatlas5k.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "mguatlas5k.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 826093fe7228c08962aff36ad89af28e
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mguatlas5k.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mgug4104a.db/meta.yaml b/recipes/bioconductor-mgug4104a.db/meta.yaml
index 511cc22eba5e0..23f2e33b36284 100644
--- a/recipes/bioconductor-mgug4104a.db/meta.yaml
+++ b/recipes/bioconductor-mgug4104a.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "mgug4104a.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 7b1cef094a226257cd657ed8d61e9ef1
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mgug4104a.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mgug4120a.db/meta.yaml b/recipes/bioconductor-mgug4120a.db/meta.yaml
index c12a333d6504d..5029a19397f6f 100644
--- a/recipes/bioconductor-mgug4120a.db/meta.yaml
+++ b/recipes/bioconductor-mgug4120a.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "mgug4120a.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: bb57e8b2efe3d038ec2a0ace0313a4e7
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mgug4120a.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mgug4121a.db/meta.yaml b/recipes/bioconductor-mgug4121a.db/meta.yaml
index f9b9edd4bd897..f58dbc5d4a23b 100644
--- a/recipes/bioconductor-mgug4121a.db/meta.yaml
+++ b/recipes/bioconductor-mgug4121a.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "mgug4121a.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 6b5cc321d5175356c383b91e30e120b7
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mgug4121a.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mgug4122a.db/meta.yaml b/recipes/bioconductor-mgug4122a.db/meta.yaml
index 11a080bd0e856..f28449f09300b 100644
--- a/recipes/bioconductor-mgug4122a.db/meta.yaml
+++ b/recipes/bioconductor-mgug4122a.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "mgug4122a.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 5fcdce909ac1c0ccbf06bf6411f6fe52
 build:
-  number: 16
+  number: 17
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mgug4122a.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mi16cod.db/meta.yaml b/recipes/bioconductor-mi16cod.db/meta.yaml
index dcb98323413d3..8fb4d0203848f 100644
--- a/recipes/bioconductor-mi16cod.db/meta.yaml
+++ b/recipes/bioconductor-mi16cod.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.4.0" %}
 {% set name = "mi16cod.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: f3a8e6f45ce5c298c1b1c5b32bf2630c
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mi16cod.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mia/meta.yaml b/recipes/bioconductor-mia/meta.yaml
index b2031393678e7..919a3676af018 100644
--- a/recipes/bioconductor-mia/meta.yaml
+++ b/recipes/bioconductor-mia/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "mia" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,32 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 4e6cd405049a4a4f7890047dd0e3ad9d
+  md5: 73446335fd354444f38c4e8cf793d520
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mia", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, patchwork, BiocStyle, yaml, phyloseq, dada2, stringr, biomformat, reldist, ade4, microbiomeDataSets, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-decipher >=2.28.0,<2.29.0'
-    - 'bioconductor-decontam >=1.20.0,<1.21.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-dirichletmultinomial >=1.42.0,<1.43.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-treesummarizedexperiment >=2.8.0,<2.9.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bluster >=1.12.0,<1.13.0'
+    - 'bioconductor-decipher >=2.30.0,<2.31.0'
+    - 'bioconductor-decontam >=1.22.0,<1.23.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-dirichletmultinomial >=1.44.0,<1.45.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-treesummarizedexperiment >=2.10.0,<2.11.0'
     - r-ape
     - r-base
     - r-dplyr
@@ -46,22 +49,24 @@ requirements:
     - r-tidyr
     - r-vegan
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-decipher >=2.28.0,<2.29.0'
-    - 'bioconductor-decontam >=1.20.0,<1.21.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-dirichletmultinomial >=1.42.0,<1.43.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-treesummarizedexperiment >=2.8.0,<2.9.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bluster >=1.12.0,<1.13.0'
+    - 'bioconductor-decipher >=2.30.0,<2.31.0'
+    - 'bioconductor-decontam >=1.22.0,<1.23.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-dirichletmultinomial >=1.44.0,<1.45.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-treesummarizedexperiment >=2.10.0,<2.11.0'
     - r-ape
     - r-base
     - r-dplyr
diff --git a/recipes/bioconductor-miasim/meta.yaml b/recipes/bioconductor-miasim/meta.yaml
index 91f6fb97a3046..01006e0284875 100644
--- a/recipes/bioconductor-miasim/meta.yaml
+++ b/recipes/bioconductor-miasim/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "miaSim" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 36d959599bdaf1bce1bc6f3302022ddc
+  md5: 0867c6e7b7cae5acbfd6154b8af06d41
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-miasim", max_pin="x.x") }}'
   noarch: generic
-# Suggests: ape, cluster, dplyr, GGally, ggplot2, igraph, network, reshape2, sna, vegan, rmarkdown, knitr, BiocStyle, testthat, mia, miaViz, colourvalues, philentropy
+# Suggests: ape, cluster, foreach, doParallel, dplyr, GGally, ggplot2, igraph, network, reshape2, sna, vegan, rmarkdown, knitr, BiocStyle, testthat, mia, miaViz, colourvalues, philentropy
 requirements:
   host:
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-treesummarizedexperiment >=2.8.0,<2.9.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-treesummarizedexperiment >=2.10.0,<2.11.0'
     - r-base
     - r-desolve
     - r-powerlaw
   run:
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-treesummarizedexperiment >=2.8.0,<2.9.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-treesummarizedexperiment >=2.10.0,<2.11.0'
     - r-base
     - r-desolve
     - r-powerlaw
diff --git a/recipes/bioconductor-miaviz/meta.yaml b/recipes/bioconductor-miaviz/meta.yaml
index f76a198ae67f3..5d98581a6690d 100644
--- a/recipes/bioconductor-miaviz/meta.yaml
+++ b/recipes/bioconductor-miaviz/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "miaViz" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,32 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 12187467cffef6ea27c17e3fce3a336a
+  md5: 8388770fbcfce7b95040dc84f02938bc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-miaviz", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr, rmarkdown, BiocStyle, testthat, patchwork, vegan, microbiomeDataSets
+# Suggests: knitr, rmarkdown, BiocStyle, testthat, patchwork, vegan, microbiomeDataSets, bluster
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-dirichletmultinomial >=1.42.0,<1.43.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
-    - 'bioconductor-mia >=1.8.0,<1.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-treesummarizedexperiment >=2.8.0,<2.9.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-dirichletmultinomial >=1.44.0,<1.45.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
+    - 'bioconductor-mia >=1.10.0,<1.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-treesummarizedexperiment >=2.10.0,<2.11.0'
     - r-ape
     - r-base
     - r-dplyr
     - r-ggnewscale
     - r-ggplot2
     - 'r-ggraph >=2.0'
+    - r-ggrepel
     - r-purrr
     - r-rlang
     - r-tibble
@@ -45,22 +48,24 @@ requirements:
     - r-tidytree
     - r-viridis
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-dirichletmultinomial >=1.42.0,<1.43.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
-    - 'bioconductor-mia >=1.8.0,<1.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-treesummarizedexperiment >=2.8.0,<2.9.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-dirichletmultinomial >=1.44.0,<1.45.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
+    - 'bioconductor-mia >=1.10.0,<1.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-treesummarizedexperiment >=2.10.0,<2.11.0'
     - r-ape
     - r-base
     - r-dplyr
     - r-ggnewscale
     - r-ggplot2
     - 'r-ggraph >=2.0'
+    - r-ggrepel
     - r-purrr
     - r-rlang
     - r-tibble
diff --git a/recipes/bioconductor-michip/meta.yaml b/recipes/bioconductor-michip/meta.yaml
index 91c869251363f..cafafc492b65d 100644
--- a/recipes/bioconductor-michip/meta.yaml
+++ b/recipes/bioconductor-michip/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.54.0" %}
+{% set version = "1.56.0" %}
 {% set name = "MiChip" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1fa83d7ff43b635845b8718f63d52c4c
+  md5: 28daafdf6588314a9fad7a75b1671c10
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-michip", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-microbiome/meta.yaml b/recipes/bioconductor-microbiome/meta.yaml
index 97851a11b7c02..1a8d53b4a4491 100644
--- a/recipes/bioconductor-microbiome/meta.yaml
+++ b/recipes/bioconductor-microbiome/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "microbiome" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f6a3ca6428df676e03c3b34d64f4fc88
+  md5: 2d185cf8b8bf7d23f295dee1af621a0f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-microbiome", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, BiocStyle, Cairo, knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
     - r-base
     - r-compositions
     - r-dplyr
@@ -34,8 +35,8 @@ requirements:
     - r-tidyr
     - r-vegan
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
     - r-base
     - r-compositions
     - r-dplyr
diff --git a/recipes/bioconductor-microbiomebenchmarkdata/meta.yaml b/recipes/bioconductor-microbiomebenchmarkdata/meta.yaml
index 3fdbe1071c43f..4738a600749e6 100644
--- a/recipes/bioconductor-microbiomebenchmarkdata/meta.yaml
+++ b/recipes/bioconductor-microbiomebenchmarkdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "MicrobiomeBenchmarkData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1116445da1265ebf3e4bf29678bd6cc3
+  md5: c6c791669de95bf2dc108798770ea5be
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-microbiomebenchmarkdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, knitr, BiocStyle, testthat (>= 3.0.0), mia, ggplot2, tidyr, dplyr, magrittr, tibble, purrr
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-treesummarizedexperiment >=2.8.0,<2.9.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-treesummarizedexperiment >=2.10.0,<2.11.0'
     - r-ape
     - r-base
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-treesummarizedexperiment >=2.8.0,<2.9.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-treesummarizedexperiment >=2.10.0,<2.11.0'
     - r-ape
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-microbiomebenchmarkdata/post-link.sh b/recipes/bioconductor-microbiomebenchmarkdata/post-link.sh
index 25fe021fab244..b41c09486c6b4 100644
--- a/recipes/bioconductor-microbiomebenchmarkdata/post-link.sh
+++ b/recipes/bioconductor-microbiomebenchmarkdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "microbiomebenchmarkdata-1.2.0"
+installBiocDataPackage.sh "microbiomebenchmarkdata-1.4.0"
diff --git a/recipes/bioconductor-microbiomedasim/meta.yaml b/recipes/bioconductor-microbiomedasim/meta.yaml
index 159e119977f81..1bf6caba4a6b5 100644
--- a/recipes/bioconductor-microbiomedasim/meta.yaml
+++ b/recipes/bioconductor-microbiomedasim/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "microbiomeDASim" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 39fb498f8346fa9914285ad4b7790a73
+  md5: 9ddf99ab393766f7bcb9dee13b3707f9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-microbiomedasim", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 2.1.0), knitr, devtools
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-metagenomeseq >=1.42.0,<1.43.0'
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-metagenomeseq >=1.43.0,<1.44.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
     - r-base
     - r-ggplot2
     - r-mass
@@ -32,9 +33,9 @@ requirements:
     - r-pbapply
     - r-tmvtnorm
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-metagenomeseq >=1.42.0,<1.43.0'
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-metagenomeseq >=1.43.0,<1.44.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
     - r-base
     - r-ggplot2
     - r-mass
diff --git a/recipes/bioconductor-microbiomedatasets/meta.yaml b/recipes/bioconductor-microbiomedatasets/meta.yaml
index 45bed4d640d18..4fcdb8454b7a9 100644
--- a/recipes/bioconductor-microbiomedatasets/meta.yaml
+++ b/recipes/bioconductor-microbiomedatasets/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "microbiomeDataSets" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 084634f8885e50e157bbaef972b7ad8f
+  md5: 90cd4bb36dafcef8f6eb0e0232afdcd0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-microbiomedatasets", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, SingleCellExperiment, testthat
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-treesummarizedexperiment >=2.8.0,<2.9.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-treesummarizedexperiment >=2.10.0,<2.11.0'
     - r-ape
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-treesummarizedexperiment >=2.8.0,<2.9.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-treesummarizedexperiment >=2.10.0,<2.11.0'
     - r-ape
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-microbiomedatasets/post-link.sh b/recipes/bioconductor-microbiomedatasets/post-link.sh
index aa74335043872..a7009b824d2c1 100644
--- a/recipes/bioconductor-microbiomedatasets/post-link.sh
+++ b/recipes/bioconductor-microbiomedatasets/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "microbiomedatasets-1.8.0"
+installBiocDataPackage.sh "microbiomedatasets-1.10.0"
diff --git a/recipes/bioconductor-microbiomeexplorer/meta.yaml b/recipes/bioconductor-microbiomeexplorer/meta.yaml
index 046802c402141..87c2c126866f1 100644
--- a/recipes/bioconductor-microbiomeexplorer/meta.yaml
+++ b/recipes/bioconductor-microbiomeexplorer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "microbiomeExplorer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2a899b212f5888fd3d9b11ee585a8119
+  md5: c1e966728a968697ad53fd6405c156c5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-microbiomeexplorer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: V8, testthat (>= 2.1.0)
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biomformat >=1.28.0,<1.29.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-metagenomeseq >=1.42.0,<1.43.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biomformat >=1.30.0,<1.31.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-metagenomeseq >=1.43.0,<1.44.0'
     - r-base
     - r-broom
     - r-car
@@ -54,11 +55,11 @@ requirements:
     - r-tidyr
     - r-vegan
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biomformat >=1.28.0,<1.29.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-metagenomeseq >=1.42.0,<1.43.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biomformat >=1.30.0,<1.31.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-metagenomeseq >=1.43.0,<1.44.0'
     - r-base
     - r-broom
     - r-car
diff --git a/recipes/bioconductor-microbiomemarker/meta.yaml b/recipes/bioconductor-microbiomemarker/meta.yaml
index f845014d8b090..6b50c7ac62de1 100644
--- a/recipes/bioconductor-microbiomemarker/meta.yaml
+++ b/recipes/bioconductor-microbiomemarker/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "microbiomeMarker" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 548c6c090fa44c0a03d1dbdfe4ae4415
+  md5: facf2f8071da6049b688fe3d16efb0e2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-microbiomemarker", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, covr, glmnet, Matrix, kernlab, e1071, ranger, knitr, rmarkdown, BiocStyle, withr
 requirements:
   host:
-    - 'bioconductor-aldex2 >=1.32.0,<1.33.0'
-    - 'bioconductor-ancombc >=2.2.0,<2.3.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biomformat >=1.28.0,<1.29.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-metagenomeseq >=1.42.0,<1.43.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-aldex2 >=1.34.0,<1.35.0'
+    - 'bioconductor-ancombc >=2.4.0,<2.5.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biomformat >=1.30.0,<1.31.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-metagenomeseq >=1.43.0,<1.44.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-caret
     - r-coin
@@ -57,23 +58,23 @@ requirements:
     - r-vegan
     - r-yaml
   run:
-    - 'bioconductor-aldex2 >=1.32.0,<1.33.0'
-    - 'bioconductor-ancombc >=2.2.0,<2.3.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biomformat >=1.28.0,<1.29.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-metagenomeseq >=1.42.0,<1.43.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-aldex2 >=1.34.0,<1.35.0'
+    - 'bioconductor-ancombc >=2.4.0,<2.5.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biomformat >=1.30.0,<1.31.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-metagenomeseq >=1.43.0,<1.44.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-caret
     - r-coin
diff --git a/recipes/bioconductor-microbiomeprofiler/meta.yaml b/recipes/bioconductor-microbiomeprofiler/meta.yaml
index 0b262d73b3fcf..7a31e5d435166 100644
--- a/recipes/bioconductor-microbiomeprofiler/meta.yaml
+++ b/recipes/bioconductor-microbiomeprofiler/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.1" %}
+{% set version = "1.8.0" %}
 {% set name = "MicrobiomeProfiler" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 47b4023245daeb0e51c9aa1e543f1d49
+  md5: 47851ff17ed03e5b448a09513c7bf122
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-microbiomeprofiler", max_pin="x.x") }}'
   noarch: generic
-# Suggests: rmarkdown, knitr, prettydoc, testthat (>= 3.0.0)
+# Suggests: rmarkdown, knitr, testthat (>= 3.0.0), prettydoc
 requirements:
   host:
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-enrichplot >=1.20.0,<1.21.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-enrichplot >=1.22.0,<1.23.0'
     - r-base
     - r-config
     - r-dt
@@ -35,8 +36,8 @@ requirements:
     - r-shinycustomloader
     - r-shinywidgets
   run:
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-enrichplot >=1.20.0,<1.21.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-enrichplot >=1.22.0,<1.23.0'
     - r-base
     - r-config
     - r-dt
diff --git a/recipes/bioconductor-microbiotaprocess/meta.yaml b/recipes/bioconductor-microbiotaprocess/meta.yaml
index 509f549b57693..448857a29ab05 100644
--- a/recipes/bioconductor-microbiotaprocess/meta.yaml
+++ b/recipes/bioconductor-microbiotaprocess/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.2" %}
+{% set version = "1.14.0" %}
 {% set name = "MicrobiotaProcess" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5e400f9a6b55f6e01b6438f36ff42a18
+  md5: 104b99004b64b664131ddea6462cbabc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-microbiotaprocess", max_pin="x.x") }}'
   noarch: generic
-# Suggests: rmarkdown, prettydoc, testthat, knitr, nlme, phangorn, DECIPHER, randomForest, jsonlite, biomformat, scales, yaml, withr, S4Vectors, purrr, seqmagick, glue, corrr, ggupset, ggVennDiagram, gghalves, ggalluvial (>= 0.11.1), forcats, phyloseq, aplot, ggnewscale, ggside, ggh4x, hopach, parallel, shadowtext, DirichletMultinomial
+# Suggests: rmarkdown, prettydoc, testthat, knitr, nlme, phangorn, DECIPHER, randomForest, jsonlite, biomformat, scales, yaml, withr, S4Vectors, purrr, seqmagick, glue, ggupset, ggVennDiagram, gghalves, ggalluvial (>= 0.11.1), forcats, phyloseq, aplot, ggnewscale, ggside, ggh4x, hopach, parallel, shadowtext, DirichletMultinomial, ggpp, BiocManager
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
-    - 'bioconductor-ggtreeextra >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-treeio >=1.24.0,<1.25.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
+    - 'bioconductor-ggtreeextra >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-treeio >=1.26.0,<1.27.0'
     - r-ape
     - r-base
     - r-cli
@@ -34,6 +35,7 @@ requirements:
     - r-dplyr
     - r-dtplyr
     - r-foreach
+    - 'r-ggfun >=0.1.1'
     - r-ggplot2
     - r-ggrepel
     - r-ggsignif
@@ -51,11 +53,11 @@ requirements:
     - r-vegan
     - r-zoo
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
-    - 'bioconductor-ggtreeextra >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-treeio >=1.24.0,<1.25.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
+    - 'bioconductor-ggtreeextra >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-treeio >=1.26.0,<1.27.0'
     - r-ape
     - r-base
     - r-cli
@@ -64,6 +66,7 @@ requirements:
     - r-dplyr
     - r-dtplyr
     - r-foreach
+    - 'r-ggfun >=0.1.1'
     - r-ggplot2
     - r-ggrepel
     - r-ggsignif
diff --git a/recipes/bioconductor-microrna/meta.yaml b/recipes/bioconductor-microrna/meta.yaml
index ee9067d643879..cc92ab37669ca 100644
--- a/recipes/bioconductor-microrna/meta.yaml
+++ b/recipes/bioconductor-microrna/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.58.0" %}
+{% set version = "1.60.0" %}
 {% set name = "microRNA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 166bcf7edb5ded052551b53db0fe6b9f
+  md5: 04b7af542581242a8e6ba5d4f19c14ca
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-microrna", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-micrornaome/meta.yaml b/recipes/bioconductor-micrornaome/meta.yaml
index cf47ca13893f9..20251ad808f38 100644
--- a/recipes/bioconductor-micrornaome/meta.yaml
+++ b/recipes/bioconductor-micrornaome/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "microRNAome" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 04f1271bdd22d4cc2dabd9e8db57e006
+  md5: 12d3baf395e82975bbcacfb9ff61a715
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-micrornaome", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, RUnit
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-micrornaome/post-link.sh b/recipes/bioconductor-micrornaome/post-link.sh
index 6708b196917f9..2c965f7636c8d 100644
--- a/recipes/bioconductor-micrornaome/post-link.sh
+++ b/recipes/bioconductor-micrornaome/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "micrornaome-1.22.0"
+installBiocDataPackage.sh "micrornaome-1.24.0"
diff --git a/recipes/bioconductor-microstasis/meta.yaml b/recipes/bioconductor-microstasis/meta.yaml
index abc37a8a4fdb7..52e1c42705ee5 100644
--- a/recipes/bioconductor-microstasis/meta.yaml
+++ b/recipes/bioconductor-microstasis/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "microSTASIS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a5e65e09dd41f9734e4ce715a6ebf564
+  md5: 7b9b67613eb5e6b69918dffc9d4060d8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-microstasis", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, gghighlight, knitr, rmarkdown, methods, RefManageR, sessioninfo, SingleCellExperiment, SummarizedExperiment, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-treesummarizedexperiment >=2.8.0,<2.9.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-treesummarizedexperiment >=2.10.0,<2.11.0'
     - r-base
     - r-ggplot2
     - r-ggside
     - r-rlang
     - r-stringr
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-treesummarizedexperiment >=2.8.0,<2.9.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-treesummarizedexperiment >=2.10.0,<2.11.0'
     - r-base
     - r-ggplot2
     - r-ggside
diff --git a/recipes/bioconductor-micsqtl/build.sh b/recipes/bioconductor-micsqtl/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-micsqtl/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-micsqtl/build_failure.linux-64.yaml b/recipes/bioconductor-micsqtl/build_failure.linux-64.yaml
new file mode 100644
index 0000000000000..3fe5e63aee6a4
--- /dev/null
+++ b/recipes/bioconductor-micsqtl/build_failure.linux-64.yaml
@@ -0,0 +1,106 @@
+recipe_sha: 48da45ce49c1641d3245866b89ddd5bb41be17df6a5b307fcbb400bb8ebd78e7  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+category: |-
+  dependency issue
+log: |2-
+   - r-ggplot2
+   - r-tca
+   - r-glue
+   - bioconductor-biocparallel >=1.36.0,<1.37.0
+   - r-dirmult
+   - r-nnls
+   - r-magrittr
+   - r-purrr
+   - r-base 4.3.*
+   - r-ggridges
+
+  with channels:
+   - file:///opt/host-conda-bld
+   - conda-forge
+   - bioconda
+   - defaults
+
+  The reported errors are:
+  - Encountered problems while solving:
+  -   - nothing provides requested r-tca
+  -
+
+  Leaving build/test directories:
+    Work:
+   /opt/conda/conda-bld/work
+    Test:
+   /opt/conda/conda-bld/test_tmp
+  Leaving build/test environments:
+    Test:
+  source activate  /opt/conda/conda-bld/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl
+    Build:
+  source activate  /opt/conda/conda-bld/_build_env
+
+
+  Traceback (most recent call last):
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 141, in mamba_get_install_actions
+      solution = solver.solve_for_action(_specs, prefix)
+    File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 244, in solve_for_action
+      t = self.solve(specs)
+    File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 234, in solve
+      raise RuntimeError("Solver could not find solution."  error_string)
+  RuntimeError: Solver could not find solution.Mamba failed to solve:
+   - bioconductor-toast >=1.16.0,<1.17.0
+   - bioconductor-summarizedexperiment >=1.32.0,<1.33.0
+   - bioconductor-s4vectors >=0.40.0,<0.41.0
+   - r-ggpubr
+   - r-ggplot2
+   - r-tca
+   - r-glue
+   - bioconductor-biocparallel >=1.36.0,<1.37.0
+   - r-dirmult
+   - r-nnls
+   - r-magrittr
+   - r-purrr
+   - r-base 4.3.*
+   - r-ggridges
+
+  with channels:
+   - file:///opt/host-conda-bld
+   - conda-forge
+   - bioconda
+   - defaults
+
+  The reported errors are:
+  - Encountered problems while solving:
+  -   - nothing provides requested r-tca
+  -
+
+  During handling of the above exception, another exception occurred:
+
+  Traceback (most recent call last):
+    File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
+      sys.exit(main())
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
+      call_conda_build(action, config)
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
+      result = api.build(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
+      return build_tree(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
+      packages_from_this = build(metadata, stats,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2038, in build
+      output_metas = expand_outputs([(m, need_source_download, need_reparse_in_env)])
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 787, in expand_outputs
+      for (output_dict, m) in deepcopy(_m).get_output_metadata_set(permit_unsatisfiable_variants=False):
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/metadata.py", line 2524, in get_output_metadata_set
+      conda_packages = finalize_outputs_pass(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/metadata.py", line 884, in finalize_outputs_pass
+      fm = finalize_metadata(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 547, in finalize_metadata
+      build_unsat, host_unsat = add_upstream_pins(m,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 409, in add_upstream_pins
+      host_deps, host_unsat, extra_run_specs_from_host = _read_upstream_pin_files(m, 'host',
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 374, in _read_upstream_pin_files
+      deps, actions, unsat = get_env_dependencies(m, env, m.config.variant,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 131, in get_env_dependencies
+      actions = environ.get_install_actions(tmpdir, tuple(dependencies), env,
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 150, in mamba_get_install_actions
+      raise err
+  conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("r-tca")}
+# Last 100 lines of the build log.
diff --git a/recipes/bioconductor-micsqtl/meta.yaml b/recipes/bioconductor-micsqtl/meta.yaml
new file mode 100644
index 0000000000000..33eb7aa2e58cf
--- /dev/null
+++ b/recipes/bioconductor-micsqtl/meta.yaml
@@ -0,0 +1,63 @@
+{% set version = "1.0.0" %}
+{% set name = "MICSQTL" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: ec49e08df014da6955d2b6ab7dc77d3b
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-micsqtl", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: testthat (>= 3.0.0), rmarkdown, knitr, BiocStyle
+requirements:
+  host:
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-toast >=1.16.0,<1.17.0'
+    - r-base
+    - r-dirmult
+    - r-ggplot2
+    - r-ggpubr
+    - r-ggridges
+    - r-glue
+    - r-magrittr
+    - r-nnls
+    - r-purrr
+    - r-tca
+  run:
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-toast >=1.16.0,<1.17.0'
+    - r-base
+    - r-dirmult
+    - r-ggplot2
+    - r-ggpubr
+    - r-ggridges
+    - r-glue
+    - r-magrittr
+    - r-nnls
+    - r-purrr
+    - r-tca
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'MICSQTL (Multi-omic deconvolution, Integration and Cell-type-specific Quantitative Trait Loci)'
+  description: 'Our pipeline, MICSQTL, utilizes scRNA-seq reference and bulk transcriptomes to estimate cellular composition in the matched bulk proteomes. The expression of genes and proteins at either bulk level or cell type level can be integrated by Angle-based Joint and Individual Variation Explained (AJIVE) framework. Meanwhile, MICSQTL can perform cell-type-specic quantitative trait loci (QTL) mapping to proteins or transcripts based on the input of bulk expression data and the estimated cellular composition per molecule type, without the need for single cell sequencing. We use matched transcriptome-proteome from human brain frontal cortex tissue samples to demonstrate the input and output of our tool.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-midashla/meta.yaml b/recipes/bioconductor-midashla/meta.yaml
index 37868a12e2dfb..99330f8c5b329 100644
--- a/recipes/bioconductor-midashla/meta.yaml
+++ b/recipes/bioconductor-midashla/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "midasHLA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 408626a1272bac5201d96f5992d1baab
+  md5: 7d77f1bda1bff8d67de91e02cb985519
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-midashla", max_pin="x.x") }}'
   noarch: generic
 # Suggests: broom.mixed (>= 0.2.4), cowplot (>= 1.0.0), devtools (>= 2.0.1), ggplot2 (>= 3.1.0), ggpubr (>= 0.2.5), rmarkdown, seqinr (>= 3.4-5), survival (>= 2.43-3), testthat (>= 2.0.1), tidyr (>= 1.1.2)
 requirements:
   host:
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'r-assertthat >=0.2.0'
     - r-base
     - 'r-broom >=0.5.1'
@@ -38,9 +39,9 @@ requirements:
     - 'r-stringi >=1.2.4'
     - 'r-tibble >=2.0.1'
   run:
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'r-assertthat >=0.2.0'
     - r-base
     - 'r-broom >=0.5.1'
diff --git a/recipes/bioconductor-migsadata/meta.yaml b/recipes/bioconductor-migsadata/meta.yaml
index 189ec9574258d..9a6355a9d9d3f 100644
--- a/recipes/bioconductor-migsadata/meta.yaml
+++ b/recipes/bioconductor-migsadata/meta.yaml
@@ -25,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - bioconductor-data-packages >=20230706
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-milor/meta.yaml b/recipes/bioconductor-milor/meta.yaml
index e1011a151d562..85f159f4f472b 100644
--- a/recipes/bioconductor-milor/meta.yaml
+++ b/recipes/bioconductor-milor/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.1" %}
+{% set version = "1.10.0" %}
 {% set name = "miloR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: bb65889883141ecec6c2ebc66cae0160
+  md5: 9ab9a4a2fe26786cd8fef69354bfa08f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-milor", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, MASS, mvtnorm, scater, scran, covr, knitr, rmarkdown, uwot, scuttle, BiocStyle, MouseGastrulationData, MouseThymusAgeing, magick, RCurl, curl, graphics
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cowplot
     - r-dplyr
@@ -48,15 +49,15 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cowplot
     - r-dplyr
diff --git a/recipes/bioconductor-mimager/meta.yaml b/recipes/bioconductor-mimager/meta.yaml
index 43bbfc9c7cd82..648f2f64bb6d4 100644
--- a/recipes/bioconductor-mimager/meta.yaml
+++ b/recipes/bioconductor-mimager/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "mimager" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,37 +11,38 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f6ed0e16875e23c4b287c4a82daaea68
+  md5: 2a9eaf36345d24dc2d44a65c1f8640a0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mimager", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, testthat, lintr, Matrix, abind, affydata, hgu95av2cdf, oligoData, pd.hugene.1.0.st.v1
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-affyplm >=1.76.0,<1.77.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-affyplm >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dbi
     - r-gtable
     - r-scales
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-affyplm >=1.76.0,<1.77.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-affyplm >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dbi
     - r-gtable
diff --git a/recipes/bioconductor-mina/meta.yaml b/recipes/bioconductor-mina/meta.yaml
index dfccfbf55bae1..1f816fb2b240f 100644
--- a/recipes/bioconductor-mina/meta.yaml
+++ b/recipes/bioconductor-mina/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "mina" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 3cfb81237b29c98fd414eadcc05c74d3
+  md5: d6578736bef864eef8f89958a849137b
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mina", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown
 requirements:
   host:
diff --git a/recipes/bioconductor-mineica/meta.yaml b/recipes/bioconductor-mineica/meta.yaml
index 2e5774e5b900e..4f8e58766912f 100644
--- a/recipes/bioconductor-mineica/meta.yaml
+++ b/recipes/bioconductor-mineica/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "MineICA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3bfbe3946133ce2be4c18c146f906f67
+  md5: d08aa74cfe4d20f4ad26235e0695d555
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mineica", max_pin="x.x") }}'
   noarch: generic
 # Suggests: biomaRt, GOstats, cluster, hgu133a.db, mclust, igraph, breastCancerMAINZ, breastCancerTRANSBIG, breastCancerUPP, breastCancerVDX, future, future.apply
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
     - 'bioconductor-lumihumanall.db >=1.22.0,<1.23.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-cluster
     - r-colorspace
@@ -49,17 +50,17 @@ requirements:
     - r-scales
     - r-xtable
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
     - 'bioconductor-lumihumanall.db >=1.22.0,<1.23.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-cluster
     - r-colorspace
diff --git a/recipes/bioconductor-minet/meta.yaml b/recipes/bioconductor-minet/meta.yaml
index 5ff3aea1feff8..2695fcc76aaa2 100644
--- a/recipes/bioconductor-minet/meta.yaml
+++ b/recipes/bioconductor-minet/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.58.0" %}
+{% set version = "3.60.0" %}
 {% set name = "minet" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c19e497a170c61859a7f850c18a64829
+  md5: 8aaab67519352be115568a301e98ef99
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-minet", max_pin="x.x") }}'
 requirements:
   host:
     - r-base
@@ -39,6 +40,8 @@ about:
   summary: 'Mutual Information NETworks'
   description: 'This package implements various algorithms for inferring mutual information networks from data.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:minet
     - doi:10.1186/1471-2105-9-461
diff --git a/recipes/bioconductor-minfi/meta.yaml b/recipes/bioconductor-minfi/meta.yaml
index ef3788c157bc2..6ed741d14afee 100644
--- a/recipes/bioconductor-minfi/meta.yaml
+++ b/recipes/bioconductor-minfi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "minfi" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f2346d9ef5bd96b0715c47402ce585d8
+  md5: 3c1998eee0aabbfab3c3796c82339a18
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-minfi", max_pin="x.x") }}'
   noarch: generic
 # Suggests: IlluminaHumanMethylation450kmanifest (>= 0.2.0), IlluminaHumanMethylation450kanno.ilmn12.hg19 (>= 0.2.1), minfiData (>= 0.18.0), minfiDataEPIC, FlowSorted.Blood.450k (>= 1.0.1), RUnit, digest, BiocStyle, knitr, rmarkdown, tools
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bumphunter >=1.42.0,<1.43.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-illuminaio >=0.42.0,<0.43.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-siggenes >=1.74.0,<1.75.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bumphunter >=1.44.0,<1.45.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-illuminaio >=0.44.0,<0.45.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-siggenes >=1.76.0,<1.77.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-beanplot
     - r-data.table
@@ -52,25 +53,25 @@ requirements:
     - r-rcolorbrewer
     - r-reshape
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bumphunter >=1.42.0,<1.43.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-illuminaio >=0.42.0,<0.43.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-siggenes >=1.74.0,<1.75.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bumphunter >=1.44.0,<1.45.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-illuminaio >=0.44.0,<0.45.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-siggenes >=1.76.0,<1.77.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-beanplot
     - r-data.table
diff --git a/recipes/bioconductor-minfidata/meta.yaml b/recipes/bioconductor-minfidata/meta.yaml
index 7168cbc79995f..f41037aeece26 100644
--- a/recipes/bioconductor-minfidata/meta.yaml
+++ b/recipes/bioconductor-minfidata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.46.0" %}
+{% set version = "0.48.0" %}
 {% set name = "minfiData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a5edb94dae6adb108bd94fdf4e0e8c3d
+  md5: 1ca7578aeab1a54db146c443870be6e7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-minfidata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
     - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
   run:
     - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-minfidata/post-link.sh b/recipes/bioconductor-minfidata/post-link.sh
index a14bd53842e17..7dbdb4780ea5f 100644
--- a/recipes/bioconductor-minfidata/post-link.sh
+++ b/recipes/bioconductor-minfidata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "minfidata-0.46.0"
+installBiocDataPackage.sh "minfidata-0.48.0"
diff --git a/recipes/bioconductor-minfidataepic/meta.yaml b/recipes/bioconductor-minfidataepic/meta.yaml
index d65e802545a06..d9429ed793030 100644
--- a/recipes/bioconductor-minfidataepic/meta.yaml
+++ b/recipes/bioconductor-minfidataepic/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "minfiDataEPIC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f61984902e4c4c2d0c01f375a3533935
+  md5: bcb0b01d571c5308e02db4c6b5c0d1ce
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-minfidataepic", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
     - 'bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylationepicmanifest >=0.3.0,<0.4.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
   run:
     - 'bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylationepicmanifest >=0.3.0,<0.4.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-minfidataepic/post-link.sh b/recipes/bioconductor-minfidataepic/post-link.sh
index 7b5637a02d804..506358fd0d0de 100644
--- a/recipes/bioconductor-minfidataepic/post-link.sh
+++ b/recipes/bioconductor-minfidataepic/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "minfidataepic-1.26.0"
+installBiocDataPackage.sh "minfidataepic-1.28.0"
diff --git a/recipes/bioconductor-minimumdistance/meta.yaml b/recipes/bioconductor-minimumdistance/meta.yaml
index 7dbd68965a2b4..46b1638468be4 100644
--- a/recipes/bioconductor-minimumdistance/meta.yaml
+++ b/recipes/bioconductor-minimumdistance/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.44.0" %}
+{% set version = "1.46.0" %}
 {% set name = "MinimumDistance" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c4a44703f30e7bfa7c4e7b02004a0f4c
+  md5: ab96e788a4152b80b7a685f3fc8fcd9c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-minimumdistance", max_pin="x.x") }}'
   noarch: generic
 # Suggests: human610quadv1bCrlmm (>= 1.0.3), BSgenome.Hsapiens.UCSC.hg18, BSgenome.Hsapiens.UCSC.hg19, RUnit
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-vanillaice >=1.62.0,<1.63.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-vanillaice >=1.64.0,<1.65.0'
     - r-base
     - r-data.table
     - r-ff
@@ -39,17 +40,17 @@ requirements:
     - r-lattice
     - r-matrixstats
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-vanillaice >=1.62.0,<1.63.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-vanillaice >=1.64.0,<1.65.0'
     - r-base
     - r-data.table
     - r-ff
diff --git a/recipes/bioconductor-minionsummarydata/meta.yaml b/recipes/bioconductor-minionsummarydata/meta.yaml
index e8c6a477792c0..f09a52c37ecc6 100644
--- a/recipes/bioconductor-minionsummarydata/meta.yaml
+++ b/recipes/bioconductor-minionsummarydata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "minionSummaryData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cab7c2dd789ebe23e1c9410bdbc259c6
+  md5: 1679c45541b2d76094c3894abe9c011d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-minionsummarydata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-minionsummarydata/post-link.sh b/recipes/bioconductor-minionsummarydata/post-link.sh
index cd6445be0f12a..9e9250e8eedd7 100644
--- a/recipes/bioconductor-minionsummarydata/post-link.sh
+++ b/recipes/bioconductor-minionsummarydata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "minionsummarydata-1.30.0"
+installBiocDataPackage.sh "minionsummarydata-1.32.0"
diff --git a/recipes/bioconductor-mipp/meta.yaml b/recipes/bioconductor-mipp/meta.yaml
index 5f900be73ec9b..50af592ccbaa4 100644
--- a/recipes/bioconductor-mipp/meta.yaml
+++ b/recipes/bioconductor-mipp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "MiPP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 79698b2acaac85272c49ff931598336b
+  md5: ce412e2a72891fcc7969faee078b2be3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mipp", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-e1071
     - r-mass
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-e1071
     - r-mass
diff --git a/recipes/bioconductor-miqc/meta.yaml b/recipes/bioconductor-miqc/meta.yaml
index 7d4a13b6656fa..6c084decec07f 100644
--- a/recipes/bioconductor-miqc/meta.yaml
+++ b/recipes/bioconductor-miqc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "miQC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 031d41e099bf5babd6b0f8d32d9f0d1e
+  md5: e1246c2b5dcb83059d6887b35db543a0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-miqc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: scRNAseq, scater, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - r-flexmix
     - r-ggplot2
   run:
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - r-flexmix
     - r-ggplot2
diff --git a/recipes/bioconductor-mira/meta.yaml b/recipes/bioconductor-mira/meta.yaml
index 604ac4269053c..93e25f1a9c765 100644
--- a/recipes/bioconductor-mira/meta.yaml
+++ b/recipes/bioconductor-mira/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "MIRA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,32 +11,33 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 58cb07316068a920e02e241d1bfe8beb
+  md5: 670cb42f275d260b28e0e2d140cacda2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mira", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, parallel, testthat, BiocStyle, rmarkdown, AnnotationHub, LOLA
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsseq >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsseq >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-ggplot2
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsseq >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsseq >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-ggplot2
diff --git a/recipes/bioconductor-mirage/meta.yaml b/recipes/bioconductor-mirage/meta.yaml
index 9b622e3b83db0..45a443bde1f58 100644
--- a/recipes/bioconductor-mirage/meta.yaml
+++ b/recipes/bioconductor-mirage/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "MiRaGE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d1ff8ce3f0bd0633b2d4fae52b4eec14
+  md5: c86c12c042052eb4d558bdff55e8c47a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mirage", max_pin="x.x") }}'
   noarch: generic
 # Suggests: seqinr (>= 3.0.7), biomaRt (>= 2.19.1), GenomicFeatures (>= 1.15.4), Biostrings (>= 2.31.3), BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm10, miRNATarget, humanStemCell, IRanges, GenomicRanges (>= 1.8.3), BSgenome, beadarrayExampleData
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-biocmanager
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-biocmanager
 test:
diff --git a/recipes/bioconductor-mirbase.db/meta.yaml b/recipes/bioconductor-mirbase.db/meta.yaml
index 15bfae93c86f9..a51ede2582bcd 100644
--- a/recipes/bioconductor-mirbase.db/meta.yaml
+++ b/recipes/bioconductor-mirbase.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.2.0" %}
 {% set name = "mirbase.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 316bc12cee8c2dd9240b7fc30cd1619e
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mirbase.db", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mirbaseversions.db/meta.yaml b/recipes/bioconductor-mirbaseversions.db/meta.yaml
index 560259e831959..a66ca195291ed 100644
--- a/recipes/bioconductor-mirbaseversions.db/meta.yaml
+++ b/recipes/bioconductor-mirbaseversions.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.1.0" %}
 {% set name = "miRBaseVersions.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,27 +13,28 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 9944ab7a474f84a40100c56298f9cb77
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mirbaseversions.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, annotate
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - r-gtools
     - r-rsqlite
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - r-gtools
     - r-rsqlite
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mircomp/meta.yaml b/recipes/bioconductor-mircomp/meta.yaml
index 9d93697dfe47d..465227f2e2975 100644
--- a/recipes/bioconductor-mircomp/meta.yaml
+++ b/recipes/bioconductor-mircomp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "miRcomp" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c16b1d3d79f266d11691bc93c44c2236
+  md5: 06b97d8829ca13b60dd4869a48b684ab
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mircomp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics, shiny
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-mircompdata >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-mircompdata >=1.32.0,<1.33.0'
     - r-base
     - r-kernsmooth
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-mircompdata >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-mircompdata >=1.32.0,<1.33.0'
     - r-base
     - r-kernsmooth
 test:
diff --git a/recipes/bioconductor-mircompdata/meta.yaml b/recipes/bioconductor-mircompdata/meta.yaml
index 02fc8b1e898c3..95ae5ae333c25 100644
--- a/recipes/bioconductor-mircompdata/meta.yaml
+++ b/recipes/bioconductor-mircompdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "miRcompData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: df2f1f8eb6489db9c0e242224b47be36
+  md5: 0b091222ebe8ac1a3a2c59384931393b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mircompdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mircompdata/post-link.sh b/recipes/bioconductor-mircompdata/post-link.sh
index d25f90ae9ebeb..5d104e9b53a6d 100644
--- a/recipes/bioconductor-mircompdata/post-link.sh
+++ b/recipes/bioconductor-mircompdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "mircompdata-1.30.0"
+installBiocDataPackage.sh "mircompdata-1.32.0"
diff --git a/recipes/bioconductor-mirintegrator/meta.yaml b/recipes/bioconductor-mirintegrator/meta.yaml
index 01a5af4f2e768..e122769fc894f 100644
--- a/recipes/bioconductor-mirintegrator/meta.yaml
+++ b/recipes/bioconductor-mirintegrator/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "mirIntegrator" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: df82dd0262aefe9230e29a27c67f760e
+  md5: 9ec5789f159dfc3880ce8369af20c27a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mirintegrator", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
-    - 'bioconductor-rontotools >=2.28.0,<2.29.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
+    - 'bioconductor-rontotools >=2.30.0,<2.31.0'
     - r-base
     - r-ggplot2
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
-    - 'bioconductor-rontotools >=2.28.0,<2.29.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
+    - 'bioconductor-rontotools >=2.30.0,<2.31.0'
     - r-base
     - r-ggplot2
 test:
diff --git a/recipes/bioconductor-mirlab/meta.yaml b/recipes/bioconductor-mirlab/meta.yaml
index e61b67c915ad2..02d028c863d44 100644
--- a/recipes/bioconductor-mirlab/meta.yaml
+++ b/recipes/bioconductor-mirlab/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "miRLAB" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 744b41ef84de2faa12cad1caefcae543
+  md5: 3347a99a17fc2caade03a35471a79ad0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mirlab", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr,BiocGenerics, AnnotationDbi,RUnit,rmarkdown
 requirements:
   host:
-    - 'bioconductor-category >=2.66.0,<2.67.0'
-    - 'bioconductor-ctc >=1.74.0,<1.75.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tcgabiolinks >=2.28.0,<2.29.0'
+    - 'bioconductor-category >=2.68.0,<2.69.0'
+    - 'bioconductor-ctc >=1.76.0,<1.77.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tcgabiolinks >=2.30.0,<2.31.0'
     - r-base
     - r-dplyr
     - r-energy
@@ -42,14 +43,14 @@ requirements:
     - r-rcurl
     - r-stringr
   run:
-    - 'bioconductor-category >=2.66.0,<2.67.0'
-    - 'bioconductor-ctc >=1.74.0,<1.75.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tcgabiolinks >=2.28.0,<2.29.0'
+    - 'bioconductor-category >=2.68.0,<2.69.0'
+    - 'bioconductor-ctc >=1.76.0,<1.77.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tcgabiolinks >=2.30.0,<2.31.0'
     - r-base
     - r-dplyr
     - r-energy
diff --git a/recipes/bioconductor-mirna102xgaincdf/meta.yaml b/recipes/bioconductor-mirna102xgaincdf/meta.yaml
index 8616bcbf2acdd..c2998928a01d0 100644
--- a/recipes/bioconductor-mirna102xgaincdf/meta.yaml
+++ b/recipes/bioconductor-mirna102xgaincdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mirna102xgaincdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 9091a45c2ac15c2de0263743ab334f97
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mirna102xgaincdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mirna10cdf/meta.yaml b/recipes/bioconductor-mirna10cdf/meta.yaml
index b29f31fb1a81c..657e2d588c9fe 100644
--- a/recipes/bioconductor-mirna10cdf/meta.yaml
+++ b/recipes/bioconductor-mirna10cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mirna10cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 814da2a2e298e132f4db0b2e8ab814be
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mirna10cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mirna10probe/meta.yaml b/recipes/bioconductor-mirna10probe/meta.yaml
index cb6bf10f733c7..ad500280b4d55 100644
--- a/recipes/bioconductor-mirna10probe/meta.yaml
+++ b/recipes/bioconductor-mirna10probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mirna10probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 8bfa6cdfeee1c563b4881214bd5d4ce1
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mirna10probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mirna20cdf/meta.yaml b/recipes/bioconductor-mirna20cdf/meta.yaml
index 7a6ca0f379587..3d81b3981f94a 100644
--- a/recipes/bioconductor-mirna20cdf/meta.yaml
+++ b/recipes/bioconductor-mirna20cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mirna20cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 56f7807673ff108427ae7f6bdf85ae1c
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mirna20cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mirnameconverter/meta.yaml b/recipes/bioconductor-mirnameconverter/meta.yaml
index ba45c1803c37d..5e214021c777c 100644
--- a/recipes/bioconductor-mirnameconverter/meta.yaml
+++ b/recipes/bioconductor-mirnameconverter/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "miRNAmeConverter" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 159e14aa90692f18e70bd6b8ab4de62e
+  md5: cfc6563f669ecbc03292cccba919fe05
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mirnameconverter", max_pin="x.x") }}'
   noarch: generic
 # Suggests: methods, testthat, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - 'bioconductor-mirbaseversions.db >=1.1.0,<1.2.0'
     - r-base
     - r-dbi
     - r-reshape2
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - 'bioconductor-mirbaseversions.db >=1.1.0,<1.2.0'
     - r-base
     - r-dbi
diff --git a/recipes/bioconductor-mirnapath/meta.yaml b/recipes/bioconductor-mirnapath/meta.yaml
index 8c1ceb8ee5cc6..9438bd5588098 100644
--- a/recipes/bioconductor-mirnapath/meta.yaml
+++ b/recipes/bioconductor-mirnapath/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.60.0" %}
+{% set version = "1.62.0" %}
 {% set name = "miRNApath" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7d5b6049d846a3e3d6bfed44c779e70d
+  md5: 94aad8a3b57b070cb5c559d9d1f14726
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mirnapath", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-mirnatap.db/meta.yaml b/recipes/bioconductor-mirnatap.db/meta.yaml
index 2de40cf5aa5d9..b8f95f3419969 100644
--- a/recipes/bioconductor-mirnatap.db/meta.yaml
+++ b/recipes/bioconductor-mirnatap.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.10" %}
 {% set name = "miRNAtap.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,26 +13,27 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 48010280b68d6f1ddbff3b374132ce0a
 build:
-  number: 14
+  number: 15
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mirnatap.db", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-mirnatap >=1.34.0,<1.35.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-mirnatap >=1.36.0,<1.37.0'
     - r-base
     - r-dbi
     - r-rsqlite
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-mirnatap >=1.34.0,<1.35.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-mirnatap >=1.36.0,<1.37.0'
     - r-base
     - r-dbi
     - r-rsqlite
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mirnatap/meta.yaml b/recipes/bioconductor-mirnatap/meta.yaml
index df8230d80281b..6a542792493d7 100644
--- a/recipes/bioconductor-mirnatap/meta.yaml
+++ b/recipes/bioconductor-mirnatap/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "miRNAtap" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6a8119335b7deb36dd6f674bc005fe77
+  md5: f09289c10d9e5e916cc1b95e79bf504f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mirnatap", max_pin="x.x") }}'
   noarch: generic
 # Suggests: topGO, org.Hs.eg.db, miRNAtap.db, testthat
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - r-plyr
@@ -29,7 +30,7 @@ requirements:
     - r-sqldf
     - r-stringr
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - r-plyr
diff --git a/recipes/bioconductor-mirnatarget/meta.yaml b/recipes/bioconductor-mirnatarget/meta.yaml
index bc6f79cce1728..130d1f40deaf8 100644
--- a/recipes/bioconductor-mirnatarget/meta.yaml
+++ b/recipes/bioconductor-mirnatarget/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "miRNATarget" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a7418be6b97608cabc13f0812caf9301
+  md5: f1988a96af5f0232abfbe507854d49bb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mirnatarget", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mirnatarget/post-link.sh b/recipes/bioconductor-mirnatarget/post-link.sh
index 2dc55d0f7b4f3..cca9ffdc3448c 100644
--- a/recipes/bioconductor-mirnatarget/post-link.sh
+++ b/recipes/bioconductor-mirnatarget/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "mirnatarget-1.38.0"
+installBiocDataPackage.sh "mirnatarget-1.40.0"
diff --git a/recipes/bioconductor-mirtarrnaseq/meta.yaml b/recipes/bioconductor-mirtarrnaseq/meta.yaml
index c9e30b0034f70..5a9e793f0b0a7 100644
--- a/recipes/bioconductor-mirtarrnaseq/meta.yaml
+++ b/recipes/bioconductor-mirtarrnaseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "mirTarRnaSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e5293fd7139409c1f97be415ff33cfdb
+  md5: b8cac8c363bddb02eb97e6009bb91f4e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mirtarrnaseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, R.cache, SPONGE
 requirements:
diff --git a/recipes/bioconductor-missmethyl/meta.yaml b/recipes/bioconductor-missmethyl/meta.yaml
index 0d0e59a147311..73c8b2a6314ae 100644
--- a/recipes/bioconductor-missmethyl/meta.yaml
+++ b/recipes/bioconductor-missmethyl/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "missMethyl" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,54 +11,55 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 14f5ef67dfb35d45507cf6d89aa482b3
+  md5: 4773cfc60c545bb0a04dac0b6cc0ac4e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-missmethyl", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, edgeR, knitr, minfiData, rmarkdown, tweeDEseqCountData, DMRcate, ExperimentHub
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
     - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0'
     - 'bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylationepicmanifest >=0.3.0,<0.4.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-methylumi >=2.46.0,<2.47.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-methylumi >=2.48.0,<2.49.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-biasedurn
     - r-ruv
     - r-statmod
     - r-stringr
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
     - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0'
     - 'bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19 >=0.6.0,<0.7.0'
     - 'bioconductor-illuminahumanmethylationepicmanifest >=0.3.0,<0.4.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-methylumi >=2.46.0,<2.47.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-methylumi >=2.48.0,<2.49.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-biasedurn
     - r-ruv
diff --git a/recipes/bioconductor-missrows/meta.yaml b/recipes/bioconductor-missrows/meta.yaml
index 202971b260664..95759b50cdab7 100644
--- a/recipes/bioconductor-missrows/meta.yaml
+++ b/recipes/bioconductor-missrows/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "missRows" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b83ec2b5bd3f9395ff1ed60e1da40868
+  md5: d076124257e06505c39064a9dcddd695
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-missrows", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, testthat
 requirements:
   host:
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - r-gtools
     - r-plyr
   run:
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - r-gtools
diff --git a/recipes/bioconductor-mistyr/meta.yaml b/recipes/bioconductor-mistyr/meta.yaml
index 4eaa178821c74..ab71622892ea4 100644
--- a/recipes/bioconductor-mistyr/meta.yaml
+++ b/recipes/bioconductor-mistyr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.1" %}
+{% set version = "1.10.0" %}
 {% set name = "mistyR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2e7371ef1a22dcb63add2f2e680deff0
+  md5: f21483e1d8c9575d0c27a9fa544cfb3c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mistyr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, covr, earth, future, igraph (>= 1.2.7), iml, kernlab, knitr, MASS, rmarkdown, RSNNS, testthat (>= 3.0.0), xgboost
 requirements:
diff --git a/recipes/bioconductor-mitch/meta.yaml b/recipes/bioconductor-mitch/meta.yaml
index 906e0da288dcc..0a18ed1cd6dfa 100644
--- a/recipes/bioconductor-mitch/meta.yaml
+++ b/recipes/bioconductor-mitch/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "mitch" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 58be0f0e3a1e2fae1812b39cf31ae3d4
+  md5: c21044d7d878482677fcb758acf0a650
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mitch", max_pin="x.x") }}'
   noarch: generic
 # Suggests: stringi, testthat (>= 2.1.0)
 requirements:
diff --git a/recipes/bioconductor-mitoclone2/build_failure.osx-64.yaml b/recipes/bioconductor-mitoclone2/build_failure.osx-64.yaml
new file mode 100644
index 0000000000000..6dc0ac91eab34
--- /dev/null
+++ b/recipes/bioconductor-mitoclone2/build_failure.osx-64.yaml
@@ -0,0 +1,106 @@
+recipe_sha: 60f475e5bda7669f78635653dbdbbc6ac8818393a7bc525552f7d723c69c6571  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+category: |-
+  source download error
+log: |2-
+      tapi:                              1100.0.11-h9ce4665_0      conda-forge
+      tk:                                8.6.13-h1abcd95_1         conda-forge
+      tktable:                           2.10-ha166976_5           conda-forge
+      toml:                              0.10.2-pyhd8ed1ab_0       conda-forge
+      tomlkit:                           0.12.3-pyha770c72_0       conda-forge
+      tzdata:                            2023c-h71feb2d_0          conda-forge
+      xmltodict:                         0.13.0-pyhd8ed1ab_0       conda-forge
+      xz:                                5.2.6-h775f41a_0          conda-forge
+      yaml:                              0.2.5-h0d85af4_2          conda-forge
+      yq:                                3.2.3-pyhd8ed1ab_0        conda-forge
+      zlib:                              1.2.13-h8a1eda9_5         conda-forge
+      zstd:                              1.5.5-h829000d_0          conda-forge
+
+  Preparing transaction: ...working... done
+  Verifying transaction: ...working... done
+  Executing transaction: ...working... done
+  Reloading output folder: /opt/mambaforge/envs/bioconda/conda-bld
+  Reloading output folder: /opt/mambaforge/envs/bioconda/conda-bld
+
+  ## Package Plan ##
+
+    environment location: /opt/mambaforge/envs/bioconda/conda-bld/bioconductor-mitoclone2_1703020590195/_build_env
+
+
+  The following NEW packages will be INSTALLED:
+
+      ca-certificates:     2023.11.17-h8857fd0_0     conda-forge
+      cctools_osx-64:      973.0.1-habff3f6_15       conda-forge
+      clang:               15.0.7-hac416ee_4         conda-forge
+      clang-15:            15.0.7-default_h6b1ee41_4 conda-forge
+      clang_impl_osx-64:   15.0.7-h03d6864_7         conda-forge
+      clang_osx-64:        15.0.7-hb91bd55_7         conda-forge
+      clangxx:             15.0.7-default_h6b1ee41_4 conda-forge
+      clangxx_impl_osx-64: 15.0.7-h2133e9c_7         conda-forge
+      clangxx_osx-64:      15.0.7-hb91bd55_7         conda-forge
+      compiler-rt:         15.0.7-ha38d28d_2         conda-forge
+      compiler-rt_osx-64:  15.0.7-ha38d28d_2         conda-forge
+      icu:                 73.2-hf5e326d_0           conda-forge
+      ld64_osx-64:         609-h0fd476b_15           conda-forge
+      libclang-cpp15:      15.0.7-default_h6b1ee41_4 conda-forge
+      libcxx:              16.0.6-hd57cbcb_0         conda-forge
+      libiconv:            1.17-hd75f5a5_2           conda-forge
+      libllvm15:           15.0.7-hbedff68_4         conda-forge
+      libxml2:             2.12.3-hc0ae0f7_0         conda-forge
+      libzlib:             1.2.13-h8a1eda9_5         conda-forge
+      llvm-tools:          15.0.7-hbedff68_4         conda-forge
+      make:                4.3-h22f3db7_1            conda-forge
+      openssl:             3.2.0-hd75f5a5_1          conda-forge
+      sigtool:             0.1.3-h88f4db0_0          conda-forge
+      tapi:                1100.0.11-h9ce4665_0      conda-forge
+      xz:                  5.2.6-h775f41a_0          conda-forge
+      zstd:                1.5.5-h829000d_0          conda-forge
+
+  Preparing transaction: ...working... done
+  Verifying transaction: ...working... done
+  Executing transaction: ...working... done
+  Source cache directory is: /opt/mambaforge/envs/bioconda/conda-bld/src_cache
+  INFO:conda_build.source:Source cache directory is: /opt/mambaforge/envs/bioconda/conda-bld/src_cache
+  Downloading source to cache: mitoClone2_1.8.1_22c58ba6ed.tar.gz
+  INFO:conda_build.source:Downloading source to cache: mitoClone2_1.8.1_22c58ba6ed.tar.gz
+  Downloading https://bioconductor.org/packages/3.18/bioc/src/contrib/mitoClone2_1.8.1.tar.gz
+  INFO:conda_build.source:Downloading https://bioconductor.org/packages/3.18/bioc/src/contrib/mitoClone2_1.8.1.tar.gz
+  Success
+  INFO:conda_build.source:Success
+  Extracting download
+  Applying patch: /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/bioconductor-mitoclone2/gamma.patch
+  Applying patch: /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/bioconductor-mitoclone2/gamma.patch with args:
+  ['-Np1', '-i', '/var/folders/qv/pdh5wsgn0lq3dp77zj602b5c0000gn/T/tmpz0brhpff/gamma.patch.native', '--binary']
+  checking file inst/SCITEpkg/findBestTrees.cpp
+  Hunk #1 succeeded at 55 (offset 2 lines).
+  Hunk #2 FAILED at 97.
+  Hunk #3 succeeded at 264 (offset 2 lines).
+  1 out of 3 hunks FAILED
+  checking file inst/SCITEpkg/mcmc.cpp
+  Hunk #1 FAILED at 41.
+  Hunk #2 succeeded at 98 (offset 2 lines).
+  Hunk #3 succeeded at 121 (offset 2 lines).
+  1 out of 3 hunks FAILED
+  checking file inst/SCITEpkg/mcmc.h
+  Hunk #1 FAILED at 8.
+  1 out of 1 hunk FAILED
+  Warning: failed to download source.  If building, will try again after downloading recipe dependencies.
+  Error was:
+  Command '['/opt/mambaforge/envs/bioconda/bin/patch', '--no-backup-if-mismatch', '--batch', '-Np1', '-i', '/var/folders/qv/pdh5wsgn0lq3dp77zj602b5c0000gn/T/tmpz0brhpff/gamma.patch.native', '--binary', '--dry-run']' returned non-zero exit status 1.
+  Traceback (most recent call last):
+    File "/opt/mambaforge/envs/bioconda/bin/conda-mambabuild", line 10, in <module>
+      sys.exit(main())
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
+      call_conda_build(action, config)
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
+      result = api.build(
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
+      return build_tree(
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
+      packages_from_this = build(metadata, stats,
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 2125, in build
+      try_download(m, no_download_source=False, raise_error=True)
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/render.py", line 663, in try_download
+      raise RuntimeError("Failed to download or patch source. Please see build log for info.")
+  RuntimeError: Failed to download or patch source. Please see build log for info.
+# Last 100 lines of the build log.
diff --git a/recipes/bioconductor-mitoclone2/meta.yaml b/recipes/bioconductor-mitoclone2/meta.yaml
index 099174a4e3d3c..5d35d4e370509 100644
--- a/recipes/bioconductor-mitoclone2/meta.yaml
+++ b/recipes/bioconductor-mitoclone2/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.1" %}
 {% set name = "mitoClone2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,7 +11,7 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f92e5f2d2688b3584be28e0aa21b8b90
+  md5: 22c58ba6ed0a51f10714551935477355
   patches:
     - gamma.patch
 build:
@@ -19,14 +19,15 @@ build:
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mitoclone2", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, Biostrings, testthat
 # SystemRequirements: GNU make, PhISCS (optional)
 requirements:
   host:
-    - 'bioconductor-deepsnv >=1.46.0,<1.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-deepsnv >=1.48.0,<1.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - r-pheatmap
@@ -34,10 +35,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-deepsnv >=1.46.0,<1.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-deepsnv >=1.48.0,<1.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - r-pheatmap
diff --git a/recipes/bioconductor-mixomics/meta.yaml b/recipes/bioconductor-mixomics/meta.yaml
index a151268aed52f..d86404b99b5ef 100644
--- a/recipes/bioconductor-mixomics/meta.yaml
+++ b/recipes/bioconductor-mixomics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "6.24.0" %}
+{% set version = "6.26.0" %}
 {% set name = "mixOmics" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0002176b6d102e7b6c4e64f8f98b6df9
+  md5: d735d1aec6a3576238256244e87031ff
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mixomics", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, rgl
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-corpcor
     - r-dplyr
@@ -38,7 +39,7 @@ requirements:
     - r-reshape2
     - r-tidyr
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-corpcor
     - r-dplyr
diff --git a/recipes/bioconductor-mlinterfaces/meta.yaml b/recipes/bioconductor-mlinterfaces/meta.yaml
index bf434ef950404..fe32e07d825f8 100644
--- a/recipes/bioconductor-mlinterfaces/meta.yaml
+++ b/recipes/bioconductor-mlinterfaces/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.80.0" %}
+{% set version = "1.82.0" %}
 {% set name = "MLInterfaces" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4a88e54ac37f4c267ee6c033b1d84a08
+  md5: acb5f91abaa05ef8c6b156b2cc7df846
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mlinterfaces", max_pin="x.x") }}'
 # Suggests: class, e1071, ipred, randomForest, gpls, pamr, nnet, ALL, hgu95av2.db, som, hu6800.db, lattice, caret (>= 5.07), golubEsets, ada, keggorthology, kernlab, mboost, party, klaR, BiocStyle, knitr, testthat
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cluster
     - r-fpc
@@ -45,11 +46,11 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cluster
     - r-fpc
diff --git a/recipes/bioconductor-mlp/meta.yaml b/recipes/bioconductor-mlp/meta.yaml
index 704803aa1b5d6..2a506c09f0e69 100644
--- a/recipes/bioconductor-mlp/meta.yaml
+++ b/recipes/bioconductor-mlp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "MLP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8456e51613e4fca3b957e9d6d0393414
+  md5: 5ed5a850807679b4baa1c5d4d88f48d6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mlp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GO.db, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, org.Cf.eg.db, org.Mmu.eg.db, KEGGREST, annotate, Rgraphviz, GOstats, graph, limma, mouse4302.db, reactome.db
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - r-gplots
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - r-gplots
 test:
diff --git a/recipes/bioconductor-mlseq/meta.yaml b/recipes/bioconductor-mlseq/meta.yaml
index d9aa91b142ad4..f6a2d8f85b768 100644
--- a/recipes/bioconductor-mlseq/meta.yaml
+++ b/recipes/bioconductor-mlseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.18.0" %}
+{% set version = "2.20.0" %}
 {% set name = "MLSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6407c67b3d4879d54a1311c5b2e27f5f
+  md5: 07ebcff7e7a474bc21b783a6ebc2605b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mlseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, e1071, kernlab
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-sseq >=1.38.0,<1.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-sseq >=1.40.0,<1.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-caret
     - r-foreach
@@ -37,12 +38,12 @@ requirements:
     - r-venndiagram
     - r-xtable
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-sseq >=1.38.0,<1.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-sseq >=1.40.0,<1.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-caret
     - r-foreach
diff --git a/recipes/bioconductor-mm24kresogen.db/meta.yaml b/recipes/bioconductor-mm24kresogen.db/meta.yaml
index fa0455eab640b..13b54d2ee5b24 100644
--- a/recipes/bioconductor-mm24kresogen.db/meta.yaml
+++ b/recipes/bioconductor-mm24kresogen.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.5.0" %}
 {% set name = "mm24kresogen.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 437f5d4bc225ee500af1ecc2d4da472b
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mm24kresogen.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mmagilentdesign026655.db/meta.yaml b/recipes/bioconductor-mmagilentdesign026655.db/meta.yaml
index 87aa088134e08..316ebba0491be 100644
--- a/recipes/bioconductor-mmagilentdesign026655.db/meta.yaml
+++ b/recipes/bioconductor-mmagilentdesign026655.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "MmAgilentDesign026655.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 7ef619bd2c74f22ea4f3c2b2c4131fe9
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mmagilentdesign026655.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mmappr2data/meta.yaml b/recipes/bioconductor-mmappr2data/meta.yaml
index 178b222d06b81..5d3faebe25bb7 100644
--- a/recipes/bioconductor-mmappr2data/meta.yaml
+++ b/recipes/bioconductor-mmappr2data/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "MMAPPR2data" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5ea459c418711fc37e694b10789d03ae
+  md5: 5b4772746766de5c40448c865fa2d60d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mmappr2data", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, roxygen2, seqinr, readr
 requirements:
   host:
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
   run:
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mmappr2data/post-link.sh b/recipes/bioconductor-mmappr2data/post-link.sh
index 4dd7748e61a2e..6cbdc2a4f1170 100644
--- a/recipes/bioconductor-mmappr2data/post-link.sh
+++ b/recipes/bioconductor-mmappr2data/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "mmappr2data-1.14.0"
+installBiocDataPackage.sh "mmappr2data-1.16.0"
diff --git a/recipes/bioconductor-mmdiff2/meta.yaml b/recipes/bioconductor-mmdiff2/meta.yaml
index 5d7d9ff1f6c61..ad1ed95691e31 100644
--- a/recipes/bioconductor-mmdiff2/meta.yaml
+++ b/recipes/bioconductor-mmdiff2/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "MMDiff2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 59a85253ca552a7e3140890cf5470067
+  md5: 6d14e03f2d5842c403a50c41f30c82d1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mmdiff2", max_pin="x.x") }}'
   noarch: generic
 # Suggests: MMDiffBamSubset, MotifDb, knitr, BiocStyle, BSgenome.Mmusculus.UCSC.mm9
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - r-locfit
     - r-rcolorbrewer
     - r-shiny
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - r-locfit
diff --git a/recipes/bioconductor-mmdiffbamsubset/meta.yaml b/recipes/bioconductor-mmdiffbamsubset/meta.yaml
index 48e87f668f0c6..c8687b937206b 100644
--- a/recipes/bioconductor-mmdiffbamsubset/meta.yaml
+++ b/recipes/bioconductor-mmdiffbamsubset/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "MMDiffBamSubset" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b9a590f3dc54a5b5b4e36232ca7e2538
+  md5: 0becc66301b49b58a99efa19577ee27c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mmdiffbamsubset", max_pin="x.x") }}'
   noarch: generic
 # Suggests: MMDiff2
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mmdiffbamsubset/post-link.sh b/recipes/bioconductor-mmdiffbamsubset/post-link.sh
index c6ea938925a92..41d02cf30eea3 100644
--- a/recipes/bioconductor-mmdiffbamsubset/post-link.sh
+++ b/recipes/bioconductor-mmdiffbamsubset/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "mmdiffbamsubset-1.36.0"
+installBiocDataPackage.sh "mmdiffbamsubset-1.38.0"
diff --git a/recipes/bioconductor-mmuphin/meta.yaml b/recipes/bioconductor-mmuphin/meta.yaml
index c674a0d4a3eca..40529f7cbcec9 100644
--- a/recipes/bioconductor-mmuphin/meta.yaml
+++ b/recipes/bioconductor-mmuphin/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "MMUPHin" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ef1929535164bd5dbb8e6b764a90d141
+  md5: 51f094480eb1629226dc1da59902ab32
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mmuphin", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle, knitr, rmarkdown, magrittr, vegan, phyloseq, curatedMetagenomicData, genefilter
 # SystemRequirements: glpk (>= 4.57)
 requirements:
   host:
-    - 'bioconductor-maaslin2 >=1.14.0,<1.15.0'
+    - 'bioconductor-maaslin2 >=1.16.0,<1.17.0'
     - r-base
     - r-cowplot
     - r-dplyr
@@ -33,7 +34,7 @@ requirements:
     - r-stringr
     - r-tidyr
   run:
-    - 'bioconductor-maaslin2 >=1.14.0,<1.15.0'
+    - 'bioconductor-maaslin2 >=1.16.0,<1.17.0'
     - r-base
     - r-cowplot
     - r-dplyr
diff --git a/recipes/bioconductor-mnem/meta.yaml b/recipes/bioconductor-mnem/meta.yaml
index 0332f413204d8..ecf09bdc62142 100644
--- a/recipes/bioconductor-mnem/meta.yaml
+++ b/recipes/bioconductor-mnem/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "mnem" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: df7fca9a51f7c89a2f846cf070e03341
+  md5: 630cb52a48148dc82038613aacb4e834
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mnem", max_pin="x.x") }}'
 # Suggests: knitr, devtools, rmarkdown, BiocGenerics, RUnit, epiNEM, BiocStyle
 requirements:
   host:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-linnorm >=2.24.0,<2.25.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-linnorm >=2.26.0,<2.27.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-cluster
     - r-data.table
@@ -40,9 +41,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-linnorm >=2.24.0,<2.25.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-linnorm >=2.26.0,<2.27.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-cluster
     - r-data.table
@@ -66,8 +67,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-3
+  license: GPL-3.0-only
   summary: 'Mixture Nested Effects Models'
   description: 'Mixture Nested Effects Models (mnem) is an extension of Nested Effects Models and allows for the analysis of single cell perturbation data provided by methods like Perturb-Seq (Dixit et al., 2016) or Crop-Seq (Datlinger et al., 2017). In those experiments each of many cells is perturbed by a knock-down of a specific gene, i.e. several cells are perturbed by a knock-down of gene A, several by a knock-down of gene B, ... and so forth. The observed read-out has to be multi-trait and in the case of the Perturb-/Crop-Seq gene are expression profiles for each cell. mnem uses a mixture model to simultaneously cluster the cell population into k clusters and and infer k networks causally linking the perturbed genes for each cluster. The mixture components are inferred via an expectation maximization algorithm.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
diff --git a/recipes/bioconductor-moanin/meta.yaml b/recipes/bioconductor-moanin/meta.yaml
index 231bfbbaf8cd4..896119d5f8400 100644
--- a/recipes/bioconductor-moanin/meta.yaml
+++ b/recipes/bioconductor-moanin/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "moanin" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 47abaa04774cc2d70389e1dde355e8b9
+  md5: 74f0ff5d927d538a2b41cdc9c1ee9fd9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-moanin", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 1.0.0), timecoursedata, knitr, rmarkdown, markdown, covr, BiocStyle
 requirements:
   host:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - r-clusterr
     - 'r-mass >=1.0.0'
@@ -35,11 +36,11 @@ requirements:
     - r-viridis
     - r-zoo
   run:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - r-clusterr
     - 'r-mass >=1.0.0'
diff --git a/recipes/bioconductor-mobilitytransformr/meta.yaml b/recipes/bioconductor-mobilitytransformr/meta.yaml
index 59a78638e061e..5d8c9210a5279 100644
--- a/recipes/bioconductor-mobilitytransformr/meta.yaml
+++ b/recipes/bioconductor-mobilitytransformr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "MobilityTransformR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: feaa92c6a8c2d5c9145dfde034172797
+  md5: 1d0f7904be49e25235092248b757df19
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mobilitytransformr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, msdata (>= 0.35.3), knitr (>= 1.1.0), roxygen2, BiocStyle (>= 2.5.19), rmarkdown
 requirements:
   host:
-    - 'bioconductor-metabocoreutils >=1.8.0,<1.9.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-spectra >=1.10.0,<1.11.0'
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-metabocoreutils >=1.10.0,<1.11.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-spectra >=1.12.0,<1.13.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-base
   run:
-    - 'bioconductor-metabocoreutils >=1.8.0,<1.9.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-spectra >=1.10.0,<1.11.0'
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-metabocoreutils >=1.10.0,<1.11.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-spectra >=1.12.0,<1.13.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-moda/meta.yaml b/recipes/bioconductor-moda/meta.yaml
index aa8aa54d1e1ed..f0c112fc22b46 100644
--- a/recipes/bioconductor-moda/meta.yaml
+++ b/recipes/bioconductor-moda/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "MODA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: dee62b28e674b74f2ee50a7413256fdb
+  md5: 5f48d76fbd7f8905725dbd2db1bc6fee
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-moda", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-amountain >=1.26.0,<1.27.0'
+    - 'bioconductor-amountain >=1.28.0,<1.29.0'
     - r-base
     - r-cluster
     - r-dynamictreecut
@@ -29,7 +30,7 @@ requirements:
     - r-rcolorbrewer
     - r-wgcna
   run:
-    - 'bioconductor-amountain >=1.26.0,<1.27.0'
+    - 'bioconductor-amountain >=1.28.0,<1.29.0'
     - r-base
     - r-cluster
     - r-dynamictreecut
diff --git a/recipes/bioconductor-modcon/meta.yaml b/recipes/bioconductor-modcon/meta.yaml
index 7dc0070ac4bae..b45ecc4ebeb3c 100644
--- a/recipes/bioconductor-modcon/meta.yaml
+++ b/recipes/bioconductor-modcon/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "ModCon" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 30a6c15c8ebc53114e7f411b9aa54bdc
+  md5: bdb0634e890917a01325519cf6e53f90
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-modcon", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, dplyr, shinycssloaders, shiny, shinyFiles, shinydashboard, shinyjs
 # SystemRequirements: Perl
diff --git a/recipes/bioconductor-modstrings/meta.yaml b/recipes/bioconductor-modstrings/meta.yaml
index ace9febb26799..41aab942018f8 100644
--- a/recipes/bioconductor-modstrings/meta.yaml
+++ b/recipes/bioconductor-modstrings/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "Modstrings" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 005a6307ac499c539b9d7b44d7d85eb2
+  md5: 04e7bccc20c165b4d1317e995a0b1de2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-modstrings", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, usethis
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-crayon
     - r-stringi
     - r-stringr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-crayon
     - r-stringi
diff --git a/recipes/bioconductor-moe430a.db/meta.yaml b/recipes/bioconductor-moe430a.db/meta.yaml
index b11256886105a..07af16105b075 100644
--- a/recipes/bioconductor-moe430a.db/meta.yaml
+++ b/recipes/bioconductor-moe430a.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "moe430a.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 2bcdace3c55437bc8428b99064e486b1
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-moe430a.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-moe430acdf/meta.yaml b/recipes/bioconductor-moe430acdf/meta.yaml
index a0309689ab273..269ad39177873 100644
--- a/recipes/bioconductor-moe430acdf/meta.yaml
+++ b/recipes/bioconductor-moe430acdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "moe430acdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b03f1295fc483f0d782a4615e8ca0137
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-moe430acdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-moe430aprobe/meta.yaml b/recipes/bioconductor-moe430aprobe/meta.yaml
index 0229d3b8e3a92..bb37dab84d098 100644
--- a/recipes/bioconductor-moe430aprobe/meta.yaml
+++ b/recipes/bioconductor-moe430aprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "moe430aprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 0aa83189d04599a65211d1a2f0a51c8f
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-moe430aprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-moe430b.db/meta.yaml b/recipes/bioconductor-moe430b.db/meta.yaml
index 8580ce349d001..1ca12a8892d3c 100644
--- a/recipes/bioconductor-moe430b.db/meta.yaml
+++ b/recipes/bioconductor-moe430b.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "moe430b.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 2d8a80b9d3342fb943087cc327c824e7
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-moe430b.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-moe430bcdf/meta.yaml b/recipes/bioconductor-moe430bcdf/meta.yaml
index ad821650817a3..e59a11f6dde96 100644
--- a/recipes/bioconductor-moe430bcdf/meta.yaml
+++ b/recipes/bioconductor-moe430bcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "moe430bcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b7112dcf8ccfe4e079ca67ff62046f2e
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-moe430bcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-moe430bprobe/meta.yaml b/recipes/bioconductor-moe430bprobe/meta.yaml
index e84ca437bcf8d..cc36302889064 100644
--- a/recipes/bioconductor-moe430bprobe/meta.yaml
+++ b/recipes/bioconductor-moe430bprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "moe430bprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 1368e6f4225babe7a693ccd39a3a436a
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-moe430bprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-moex10stprobeset.db/meta.yaml b/recipes/bioconductor-moex10stprobeset.db/meta.yaml
index eb27513f5a45b..cfb5fa806324b 100644
--- a/recipes/bioconductor-moex10stprobeset.db/meta.yaml
+++ b/recipes/bioconductor-moex10stprobeset.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "moex10stprobeset.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b1c12c80a4424e2854beab9dc796cb00
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-moex10stprobeset.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-moex10sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-moex10sttranscriptcluster.db/meta.yaml
index feb6e978b0de1..224ad7a7dc909 100644
--- a/recipes/bioconductor-moex10sttranscriptcluster.db/meta.yaml
+++ b/recipes/bioconductor-moex10sttranscriptcluster.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "moex10sttranscriptcluster.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: bc3357b3c77ab7bf1dfb66f5f7da36ec
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-moex10sttranscriptcluster.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-moexexonprobesetlocation/meta.yaml b/recipes/bioconductor-moexexonprobesetlocation/meta.yaml
index 7db924e5850a4..60209c1317491 100644
--- a/recipes/bioconductor-moexexonprobesetlocation/meta.yaml
+++ b/recipes/bioconductor-moexexonprobesetlocation/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.15.0" %}
 {% set name = "MoExExonProbesetLocation" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 07eea205fce2a8cf4585fa7e71fb0057
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-moexexonprobesetlocation", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mofa2/meta.yaml b/recipes/bioconductor-mofa2/meta.yaml
index 45435aa0c80a0..5040a7de17019 100644
--- a/recipes/bioconductor-mofa2/meta.yaml
+++ b/recipes/bioconductor-mofa2/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "MOFA2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 534a7aee62498651a346619081e8d819
+  md5: 0ce3c0d9a65e9e3f18d387af8a86ef6e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mofa2", max_pin="x.x") }}'
 # Suggests: knitr, testthat, Seurat, ggpubr, foreach, psych, MultiAssayExperiment, SummarizedExperiment, SingleCellExperiment, ggrastr, mvtnorm, GGally, rmarkdown, data.table, tidyverse, BiocStyle, Matrix, markdown
 # SystemRequirements: Python (>=3), numpy, pandas, h5py, scipy, argparse, sklearn, mofapy2
 requirements:
   host:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
     - r-base
     - r-corrplot
     - r-cowplot
@@ -42,10 +43,10 @@ requirements:
     - r-tidyr
     - r-uwot
   run:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
     - r-base
     - r-corrplot
     - r-cowplot
diff --git a/recipes/bioconductor-mofadata/meta.yaml b/recipes/bioconductor-mofadata/meta.yaml
index ba73ea609b4be..3105056f66ed7 100644
--- a/recipes/bioconductor-mofadata/meta.yaml
+++ b/recipes/bioconductor-mofadata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.1" %}
+{% set version = "1.18.0" %}
 {% set name = "MOFAdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7c3605011c45bfe05471c35727cf9896
+  md5: 23e46e209a43d7e62cfd6accc6a6fb44
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mofadata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, MultiAssayExperiment, rmarkdown, BiocStyle
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mofadata/post-link.sh b/recipes/bioconductor-mofadata/post-link.sh
index d8d3db7951bff..b927a90f23c04 100644
--- a/recipes/bioconductor-mofadata/post-link.sh
+++ b/recipes/bioconductor-mofadata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "mofadata-1.16.1"
+installBiocDataPackage.sh "mofadata-1.18.0"
diff --git a/recipes/bioconductor-mogamun/meta.yaml b/recipes/bioconductor-mogamun/meta.yaml
index 2d1af7529d78f..ec048725b40a6 100644
--- a/recipes/bioconductor-mogamun/meta.yaml
+++ b/recipes/bioconductor-mogamun/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "MOGAMUN" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ce6bc4ff332cffdd506ab91cd5246055
+  md5: 8e2d5c06b9fc3d7e294b154f7efb83b3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mogamun", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, markdown
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-rcy3 >=2.20.0,<2.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-rcy3 >=2.22.0,<2.23.0'
     - r-base
     - r-igraph
     - r-runit
     - r-stringr
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-rcy3 >=2.20.0,<2.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-rcy3 >=2.22.0,<2.23.0'
     - r-base
     - r-igraph
     - r-runit
diff --git a/recipes/bioconductor-mogene.1.0.st.v1frmavecs/meta.yaml b/recipes/bioconductor-mogene.1.0.st.v1frmavecs/meta.yaml
index 6d9d7efb92d10..99400c2a549a3 100644
--- a/recipes/bioconductor-mogene.1.0.st.v1frmavecs/meta.yaml
+++ b/recipes/bioconductor-mogene.1.0.st.v1frmavecs/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.1.0" %}
 {% set name = "mogene.1.0.st.v1frmavecs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b46f76903d0f19b85e8fa30347813ff5
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mogene.1.0.st.v1frmavecs", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mogene10stprobeset.db/meta.yaml b/recipes/bioconductor-mogene10stprobeset.db/meta.yaml
index 150788d2deaab..98460dd552e38 100644
--- a/recipes/bioconductor-mogene10stprobeset.db/meta.yaml
+++ b/recipes/bioconductor-mogene10stprobeset.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "mogene10stprobeset.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 570d4cf3fcc42d1e9b54237b9e4eb5f7
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mogene10stprobeset.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mogene10sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-mogene10sttranscriptcluster.db/meta.yaml
index 9b1a33769b847..b7365dee5c39e 100644
--- a/recipes/bioconductor-mogene10sttranscriptcluster.db/meta.yaml
+++ b/recipes/bioconductor-mogene10sttranscriptcluster.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "mogene10sttranscriptcluster.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 9553a8ecefad2baa7241c6b6bb8013f5
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mogene10sttranscriptcluster.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mogene10stv1cdf/meta.yaml b/recipes/bioconductor-mogene10stv1cdf/meta.yaml
index 1fe199e259fc5..842e7b799689e 100644
--- a/recipes/bioconductor-mogene10stv1cdf/meta.yaml
+++ b/recipes/bioconductor-mogene10stv1cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mogene10stv1cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 9c0271f5d6493290fc47f041a8c3f925
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mogene10stv1cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mogene10stv1probe/meta.yaml b/recipes/bioconductor-mogene10stv1probe/meta.yaml
index 2c76031f6e705..7df09b6409c4e 100644
--- a/recipes/bioconductor-mogene10stv1probe/meta.yaml
+++ b/recipes/bioconductor-mogene10stv1probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mogene10stv1probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 63cba1e2a0edee9f201267057fddb0fa
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mogene10stv1probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mogene11stprobeset.db/meta.yaml b/recipes/bioconductor-mogene11stprobeset.db/meta.yaml
index 1674014284721..d6a7c91a56257 100644
--- a/recipes/bioconductor-mogene11stprobeset.db/meta.yaml
+++ b/recipes/bioconductor-mogene11stprobeset.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "mogene11stprobeset.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 1fba63da3f550e814a58c09d24d61cc0
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mogene11stprobeset.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mogene11sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-mogene11sttranscriptcluster.db/meta.yaml
index 68b1d94d06bd2..e973216aa7b66 100644
--- a/recipes/bioconductor-mogene11sttranscriptcluster.db/meta.yaml
+++ b/recipes/bioconductor-mogene11sttranscriptcluster.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "mogene11sttranscriptcluster.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 2a3bf07a4794e2349b7d09368dcb7d18
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mogene11sttranscriptcluster.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mogene20stprobeset.db/meta.yaml b/recipes/bioconductor-mogene20stprobeset.db/meta.yaml
index ee52a6e528392..d2fae2f15b125 100644
--- a/recipes/bioconductor-mogene20stprobeset.db/meta.yaml
+++ b/recipes/bioconductor-mogene20stprobeset.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "mogene20stprobeset.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: a64ddbf33e4f2b96301452e808d0e81a
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mogene20stprobeset.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mogene20sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-mogene20sttranscriptcluster.db/meta.yaml
index f852ea0bff57e..192560f9dbc55 100644
--- a/recipes/bioconductor-mogene20sttranscriptcluster.db/meta.yaml
+++ b/recipes/bioconductor-mogene20sttranscriptcluster.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "mogene20sttranscriptcluster.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: e00e56d47bd19169875690e8e2129156
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mogene20sttranscriptcluster.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mogene21stprobeset.db/meta.yaml b/recipes/bioconductor-mogene21stprobeset.db/meta.yaml
index ca1fbc8d88889..fae2795386efa 100644
--- a/recipes/bioconductor-mogene21stprobeset.db/meta.yaml
+++ b/recipes/bioconductor-mogene21stprobeset.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "mogene21stprobeset.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: d6b3c352329b46493a20f6c27db05d43
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mogene21stprobeset.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mogene21sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-mogene21sttranscriptcluster.db/meta.yaml
index 775a5abc82d65..d36ffcbf36338 100644
--- a/recipes/bioconductor-mogene21sttranscriptcluster.db/meta.yaml
+++ b/recipes/bioconductor-mogene21sttranscriptcluster.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "mogene21sttranscriptcluster.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 10aaecc97bf06bfe770496b99612837a
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mogene21sttranscriptcluster.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mogsa/meta.yaml b/recipes/bioconductor-mogsa/meta.yaml
index 4340dde6e1703..d9ec395d1b4f8 100644
--- a/recipes/bioconductor-mogsa/meta.yaml
+++ b/recipes/bioconductor-mogsa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "mogsa" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,32 +11,33 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 97374d3cdbd264479ec1188d20ddc51f
+  md5: 177b003a38a7dc7ce3fb238369d1b6e7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mogsa", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, org.Hs.eg.db
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-graphite >=1.46.0,<1.47.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-graphite >=1.48.0,<1.49.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
     - r-base
     - r-cluster
     - r-corpcor
     - r-gplots
     - r-svd
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-graphite >=1.46.0,<1.47.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-graphite >=1.48.0,<1.49.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
     - r-base
     - r-cluster
     - r-corpcor
diff --git a/recipes/bioconductor-moleculeexperiment/meta.yaml b/recipes/bioconductor-moleculeexperiment/meta.yaml
index 1aa49271ff42a..995c26bed8b41 100644
--- a/recipes/bioconductor-moleculeexperiment/meta.yaml
+++ b/recipes/bioconductor-moleculeexperiment/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.1" %}
+{% set version = "1.2.2" %}
 {% set name = "MoleculeExperiment" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 94c764955d2e47687932b60877afec83
+  md5: d8fef705349bc9464ae152cd47bb9a58
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-moleculeexperiment", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
     - r-base
+    - r-cli
     - r-data.table
     - 'r-dplyr >=1.1.1'
     - r-ggplot2
@@ -31,11 +37,15 @@ requirements:
     - r-purrr
     - r-rjson
     - r-rlang
-    - r-sp
     - r-terra
   run:
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
     - r-base
+    - r-cli
     - r-data.table
     - 'r-dplyr >=1.1.1'
     - r-ggplot2
@@ -44,7 +54,6 @@ requirements:
     - r-purrr
     - r-rjson
     - r-rlang
-    - r-sp
     - r-terra
 test:
   commands:
diff --git a/recipes/bioconductor-moma/meta.yaml b/recipes/bioconductor-moma/meta.yaml
index 72b4f034a14c9..82fa380418cee 100644
--- a/recipes/bioconductor-moma/meta.yaml
+++ b/recipes/bioconductor-moma/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "MOMA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 375d2de012590d80009625c8bdc11217
+  md5: ce4cf6dab5fea53127b5b980756ef5db
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-moma", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, viper
 requirements:
   host:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
     - r-circlize
     - r-cluster
@@ -39,9 +40,9 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
     - r-circlize
     - r-cluster
diff --git a/recipes/bioconductor-monalisa/meta.yaml b/recipes/bioconductor-monalisa/meta.yaml
index 4fe4192f03b03..a8dbdc4c4bbc7 100644
--- a/recipes/bioconductor-monalisa/meta.yaml
+++ b/recipes/bioconductor-monalisa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "monaLisa" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,46 +11,47 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4e0c35f87fe09e20036c129bc9e1e736
+  md5: fc86eb3743fc47252a4420cd850ead9e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-monalisa", max_pin="x.x") }}'
   noarch: generic
 # Suggests: JASPAR2020, BSgenome.Mmusculus.UCSC.mm10, TxDb.Mmusculus.UCSC.mm10.knownGene, knitr, rmarkdown, testthat, BiocStyle, gridExtra
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tfbstools >=1.38.0,<1.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tfbstools >=1.40.0,<1.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-circlize
     - r-glmnet
     - r-stabs
     - r-vioplot
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tfbstools >=1.38.0,<1.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tfbstools >=1.40.0,<1.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-circlize
     - r-glmnet
diff --git a/recipes/bioconductor-monocle/meta.yaml b/recipes/bioconductor-monocle/meta.yaml
index 08bf12a037b44..0d97d8b9d68ad 100644
--- a/recipes/bioconductor-monocle/meta.yaml
+++ b/recipes/bioconductor-monocle/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.28.0" %}
+{% set version = "2.30.0" %}
 {% set name = "monocle" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 32a002f0d1231c13af5da03fc43f1401
+  md5: 8b3a3d5cd2698b4cef4396c388250658
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-monocle", max_pin="x.x") }}'
 # Suggests: destiny, Hmisc, knitr, Seurat, scater, testthat
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocviews >=1.68.0,<1.69.0'
-    - 'bioconductor-hsmmsinglecell >=1.20.0,<1.21.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocviews >=1.70.0,<1.71.0'
+    - 'bioconductor-hsmmsinglecell >=1.22.0,<1.23.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-cluster
     - r-combinat
@@ -54,11 +55,11 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocviews >=1.68.0,<1.69.0'
-    - 'bioconductor-hsmmsinglecell >=1.20.0,<1.21.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocviews >=1.70.0,<1.71.0'
+    - 'bioconductor-hsmmsinglecell >=1.22.0,<1.23.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-cluster
     - r-combinat
@@ -98,6 +99,8 @@ about:
   summary: 'Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq'
   description: 'Monocle performs differential expression and time-series analysis for single-cell expression experiments. It orders individual cells according to progress through a biological process, without knowing ahead of time which genes define progress through that process. Monocle also performs differential expression analysis, clustering, visualization, and other useful tasks on single cell expression data.  It is designed to work with RNA-Seq and qPCR data, but could be used with other types as well.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:monocle
   parent_recipe:
diff --git a/recipes/bioconductor-moonlight2r/build.sh b/recipes/bioconductor-moonlight2r/build.sh
new file mode 100644
index 0000000000000..497f7b5bdb678
--- /dev/null
+++ b/recipes/bioconductor-moonlight2r/build.sh
@@ -0,0 +1,12 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+export LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda-linux-gnu/sysroot/usr/lib64:${BUILD_PREFIX}/lib
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-moonlight2r/meta.yaml b/recipes/bioconductor-moonlight2r/meta.yaml
new file mode 100644
index 0000000000000..0bfdabb5af5a6
--- /dev/null
+++ b/recipes/bioconductor-moonlight2r/meta.yaml
@@ -0,0 +1,108 @@
+{% set version = "1.0.0" %}
+{% set name = "Moonlight2R" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 45af1bc580f9231cb2a83eae7517d3b8
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-moonlight2r", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), devtools, roxygen2, png
+# SystemRequirements: CScapeSomatic
+requirements:
+  host:
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - r-base
+    - r-circlize
+    - r-doparallel
+    - r-dplyr
+    - r-easypubmed
+    - r-foreach
+    - r-fuzzyjoin
+    - r-gplots
+    - r-hiver
+    - r-magrittr
+    - r-parmigene
+    - r-purrr
+    - r-qpdf
+    - r-randomforest
+    - r-rcolorbrewer
+    - r-readr
+    - r-rismed
+    - r-seqminer
+    - r-stringr
+    - r-tibble
+    - r-tidyheatmap
+    - r-tidyr
+  run:
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - r-base
+    - r-circlize
+    - r-doparallel
+    - r-dplyr
+    - r-easypubmed
+    - r-foreach
+    - r-fuzzyjoin
+    - r-gplots
+    - r-hiver
+    - r-magrittr
+    - r-parmigene
+    - r-purrr
+    - r-qpdf
+    - r-randomforest
+    - r-rcolorbrewer
+    - r-readr
+    - r-rismed
+    - r-seqminer
+    - r-stringr
+    - r-tibble
+    - r-tidyheatmap
+    - r-tidyr
+  build:
+    - {{ cdt('mesa-libgl-devel') }}  # [linux]
+    - {{ cdt('mesa-dri-drivers') }}  # [linux]
+    - {{ cdt('libselinux') }}  # [linux]
+    - {{ cdt('libxdamage') }}  # [linux]
+    - {{ cdt('libxxf86vm') }}  # [linux]
+    - xorg-libxfixes  # [linux]
+test:
+  commands:
+    - 'LD_LIBRARY_PATH="${BUILD_PREFIX}/x86_64-conda-linux-gnu/sysroot/usr/lib64:${BUILD_PREFIX}/lib" $R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'Identify oncogenes and tumor suppressor genes from omics data'
+  description: 'The understanding of cancer mechanism requires the identification of genes playing a role in the development of the pathology and the characterization of their role (notably oncogenes and tumor suppressors). We present an updated version of the R/bioconductor package called MoonlightR, namely Moonlight2R, which returns a list of candidate driver genes for specific cancer types on the basis of omics data integration. The Moonlight framework contains a primary layer where gene expression data and information about biological processes are integrated to predict genes called oncogenic mediators, divided into putative tumor suppressors and putative oncogenes. This is done through functional enrichment analyses, gene regulatory networks and upstream regulator analyses to score the importance of well-known biological processes with respect to the studied cancer type. By evaluating the effect of the oncogenic mediators on biological processes or through random forests, the primary layer predicts two putative roles for the oncogenic mediators: i) tumor suppressor genes (TSGs) and ii) oncogenes (OCGs). As gene expression data alone is not enough to explain the deregulation of the genes, a second layer of evidence is needed. We have automated the integration of a secondary mutational layer through new functionalities in Moonlight2R. These functionalities analyze mutations in the cancer cohort and classifies these into driver and passenger mutations using the driver mutation prediction tool, CScape-somatic. Those oncogenic mediators with at least one driver mutation are retained as the driver genes. As a consequence, this methodology does not only identify genes playing a dual role (e.g. TSG in one cancer type and OCG in another) but also helps in elucidating the biological processes underlying their specific roles. In particular, Moonlight2R can be used to discover OCGs and TSGs in the same cancer type. This may for instance help in answering the question whether some genes change role between early stages (I, II) and late stages (III, IV). In the future, this analysis could be useful to determine the causes of different resistances to chemotherapeutic treatments.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+extra:
+  container:
+    extended-base: true
+
diff --git a/recipes/bioconductor-moonlightr/meta.yaml b/recipes/bioconductor-moonlightr/meta.yaml
index a7f5cc135260a..c20170c048746 100644
--- a/recipes/bioconductor-moonlightr/meta.yaml
+++ b/recipes/bioconductor-moonlightr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "MoonlightR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6dc98a013d9a14f5fb86143343d1d102
+  md5: 2a389ad9b7fe5ffc5e2c47717eb0b4c0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-moonlightr", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BiocStyle, knitr, rmarkdown, testthat, devtools, roxygen2, png
+# Suggests: BiocStyle, knitr, rmarkdown, testthat, devtools, roxygen2, png, edgeR
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tcgabiolinks >=2.28.0,<2.29.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tcgabiolinks >=2.30.0,<2.31.0'
     - r-base
     - r-circlize
     - r-doparallel
@@ -39,13 +40,13 @@ requirements:
     - r-rcolorbrewer
     - r-rismed
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tcgabiolinks >=2.28.0,<2.29.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tcgabiolinks >=2.30.0,<2.31.0'
     - r-base
     - r-circlize
     - r-doparallel
diff --git a/recipes/bioconductor-mosaics/meta.yaml b/recipes/bioconductor-mosaics/meta.yaml
index 931647a8ef049..a9598eaacbb9c 100644
--- a/recipes/bioconductor-mosaics/meta.yaml
+++ b/recipes/bioconductor-mosaics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.38.0" %}
+{% set version = "2.40.0" %}
 {% set name = "mosaics" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: e8ea8871c14e28559be2f8ccb77837ff
+  md5: 0648fcfd9fd595974e0602fbb2a37cac
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mosaics", max_pin="x.x") }}'
 # Suggests: mosaicsExample
 # SystemRequirements: Perl
 requirements:
   host:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-lattice
     - r-mass
@@ -35,12 +36,12 @@ requirements:
     - liblapack
     - 'perl >=5.6.0'
   run:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-lattice
     - r-mass
diff --git a/recipes/bioconductor-mosaicsexample/meta.yaml b/recipes/bioconductor-mosaicsexample/meta.yaml
index 28c25085fd5ee..ff93401dec058 100644
--- a/recipes/bioconductor-mosaicsexample/meta.yaml
+++ b/recipes/bioconductor-mosaicsexample/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "mosaicsExample" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: dbbc0ae50f0d93a64a45efe4bb848a71
+  md5: 8852ad56f152a138367e7630b6b21efb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mosaicsexample", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mosaicsexample/post-link.sh b/recipes/bioconductor-mosaicsexample/post-link.sh
index 67a72782b8979..b88c16fdb3cce 100644
--- a/recipes/bioconductor-mosaicsexample/post-link.sh
+++ b/recipes/bioconductor-mosaicsexample/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "mosaicsexample-1.38.0"
+installBiocDataPackage.sh "mosaicsexample-1.40.0"
diff --git a/recipes/bioconductor-mosbi/meta.yaml b/recipes/bioconductor-mosbi/meta.yaml
index 6651c91f23fc6..4206531beddd4 100644
--- a/recipes/bioconductor-mosbi/meta.yaml
+++ b/recipes/bioconductor-mosbi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "mosbi" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: b333ac572e9c67bf00a326e4be6cec60
+  md5: f34159f8140d9fe59ea7fe2546e9cdce
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mosbi", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, BiocGenerics, runibic, BiocStyle, testthat (>= 3.0.0)
 # SystemRequirements: C++17, GNU make
 requirements:
   host:
-    - 'bioconductor-fabia >=2.46.0,<2.47.0'
-    - 'bioconductor-qubic >=1.28.0,<1.29.0'
+    - 'bioconductor-fabia >=2.48.0,<2.49.0'
+    - 'bioconductor-qubic >=1.30.0,<1.31.0'
     - r-akmbiclust
     - r-base
     - r-bh
@@ -36,8 +37,8 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-fabia >=2.46.0,<2.47.0'
-    - 'bioconductor-qubic >=1.28.0,<1.29.0'
+    - 'bioconductor-fabia >=2.48.0,<2.49.0'
+    - 'bioconductor-qubic >=1.30.0,<1.31.0'
     - r-akmbiclust
     - r-base
     - r-bh
diff --git a/recipes/bioconductor-mosim/meta.yaml b/recipes/bioconductor-mosim/meta.yaml
index 045faf97a8da1..b7ae429633a46 100644
--- a/recipes/bioconductor-mosim/meta.yaml
+++ b/recipes/bioconductor-mosim/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "MOSim" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ece9e267f663dd2ff82200594d6d59fa
+  md5: 67f131b000a6d50361f61b4a78835d47
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mosim", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -39,9 +40,9 @@ requirements:
     - r-tidyr
     - r-zoo
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-motif2site/meta.yaml b/recipes/bioconductor-motif2site/meta.yaml
index 16140537eb5e7..d941340b40832 100644
--- a/recipes/bioconductor-motif2site/meta.yaml
+++ b/recipes/bioconductor-motif2site/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "Motif2Site" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,38 +11,39 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 594b23135d3e5f26922687fb1c328655
+  md5: e8228f1deb42f2d4b3867a90a6eba14c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-motif2site", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, rmarkdown, knitr, BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10, BSgenome.Scerevisiae.UCSC.sacCer3, BSgenome.Ecoli.NCBI.20080805
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-mass
     - r-mixtools
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-mass
     - r-mixtools
diff --git a/recipes/bioconductor-motifbreakr/meta.yaml b/recipes/bioconductor-motifbreakr/meta.yaml
index d83aaeb709ed2..ac68355c1531a 100644
--- a/recipes/bioconductor-motifbreakr/meta.yaml
+++ b/recipes/bioconductor-motifbreakr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.13.7" %}
+{% set version = "2.16.0" %}
 {% set name = "motifbreakR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,49 +11,50 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b47582e0b811ea6ec5a2e46456e1d7db
+  md5: fd2ed6098a4bade8948f237753404006
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-motifbreakr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Hsapiens.UCSC.hg19, SNPlocs.Hsapiens.dbSNP155.GRCh37, knitr, rmarkdown, BSgenome.Drerio.UCSC.danRer7, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-motifdb >=1.42.0,<1.43.0'
-    - 'bioconductor-motifstack >=1.44.0,<1.45.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-motifdb >=1.44.0,<1.45.0'
+    - 'bioconductor-motifstack >=1.46.0,<1.47.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-matrixstats
     - r-stringr
     - r-tfmpvalue
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-motifdb >=1.42.0,<1.43.0'
-    - 'bioconductor-motifstack >=1.44.0,<1.45.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-motifdb >=1.44.0,<1.45.0'
+    - 'bioconductor-motifstack >=1.46.0,<1.47.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-matrixstats
     - r-stringr
diff --git a/recipes/bioconductor-motifcounter/meta.yaml b/recipes/bioconductor-motifcounter/meta.yaml
index a6ee87d58aa3a..a8167142b3b79 100644
--- a/recipes/bioconductor-motifcounter/meta.yaml
+++ b/recipes/bioconductor-motifcounter/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "motifcounter" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 74707d361ecee0670ee22449f0bd3479
+  md5: f093ba4ac3fe6bcf19d9d46bfb084290
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-motifcounter", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, testthat, MotifDb, seqLogo, prettydoc
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-motifdb/meta.yaml b/recipes/bioconductor-motifdb/meta.yaml
index 63e63c09db371..ccbbed4686d7d 100644
--- a/recipes/bioconductor-motifdb/meta.yaml
+++ b/recipes/bioconductor-motifdb/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "MotifDb" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 816f2af600528aae335542318f7ead0f
+  md5: 0aa63f3bc133dc0fa6c8cf88ebae383b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-motifdb", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, seqLogo, BiocStyle, knitr, rmarkdown, formatR, markdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-splitstackshape
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-splitstackshape
 test:
diff --git a/recipes/bioconductor-motifmatchr/meta.yaml b/recipes/bioconductor-motifmatchr/meta.yaml
index b18da3e965dc7..77a5618b3748d 100644
--- a/recipes/bioconductor-motifmatchr/meta.yaml
+++ b/recipes/bioconductor-motifmatchr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "motifmatchr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: cc0571d16d56335905d347e7967a7308
+  md5: 23c63cb97f5e359a4fb9e5e6751e037d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-motifmatchr", max_pin="x.x") }}'
 # Suggests: testthat, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tfbstools >=1.38.0,<1.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tfbstools >=1.40.0,<1.41.0'
     - r-base
     - r-matrix
     - r-rcpp
@@ -37,15 +38,15 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tfbstools >=1.38.0,<1.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tfbstools >=1.40.0,<1.41.0'
     - r-base
     - r-matrix
     - r-rcpp
diff --git a/recipes/bioconductor-motifstack/meta.yaml b/recipes/bioconductor-motifstack/meta.yaml
index 547e310dd4115..2475f81526c68 100644
--- a/recipes/bioconductor-motifstack/meta.yaml
+++ b/recipes/bioconductor-motifstack/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.44.1" %}
+{% set version = "1.46.0" %}
 {% set name = "motifStack" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1a907c93e9a990ab341e7ed4ce5a29bc
+  md5: b3306b32c8722e6d63ee1a37165a572e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-motifstack", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Cairo, grImport, grImport2, BiocGenerics, MotifDb, RColorBrewer, BiocStyle, knitr, RUnit, rmarkdown, JASPAR2020
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-tfbstools >=1.38.0,<1.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-tfbstools >=1.40.0,<1.41.0'
     - r-ade4
     - r-base
     - r-ggplot2
     - r-htmlwidgets
     - r-xml
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-tfbstools >=1.38.0,<1.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-tfbstools >=1.40.0,<1.41.0'
     - r-ade4
     - r-base
     - r-ggplot2
diff --git a/recipes/bioconductor-mouse.db0/meta.yaml b/recipes/bioconductor-mouse.db0/meta.yaml
index 8cdf1d8f11550..ae26bfd28f0fd 100644
--- a/recipes/bioconductor-mouse.db0/meta.yaml
+++ b/recipes/bioconductor-mouse.db0/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "mouse.db0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 132244baa13685fdb259ecaecd9535af
+  md5: 1ef6bb1d25e53443871e0e8c975b36c0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mouse.db0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mouse.db0/post-link.sh b/recipes/bioconductor-mouse.db0/post-link.sh
index 7602a0e166383..b17f1a0a17b14 100644
--- a/recipes/bioconductor-mouse.db0/post-link.sh
+++ b/recipes/bioconductor-mouse.db0/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "mouse.db0-3.17.0"
+installBiocDataPackage.sh "mouse.db0-3.18.0"
diff --git a/recipes/bioconductor-mouse4302.db/meta.yaml b/recipes/bioconductor-mouse4302.db/meta.yaml
index 8fb2201559542..0a61e3af5ee7a 100644
--- a/recipes/bioconductor-mouse4302.db/meta.yaml
+++ b/recipes/bioconductor-mouse4302.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "mouse4302.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 4ecaa53d32faca4199ba712c0e8ee570
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mouse4302.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mouse4302barcodevecs/meta.yaml b/recipes/bioconductor-mouse4302barcodevecs/meta.yaml
index f8719b767f2a7..027726e25334e 100644
--- a/recipes/bioconductor-mouse4302barcodevecs/meta.yaml
+++ b/recipes/bioconductor-mouse4302barcodevecs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "mouse4302barcodevecs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: bb60f755fb3fc86b8dbb769bbe6f06c4
+  md5: 365757fba17dae1ed483e184d2c9fcdb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mouse4302barcodevecs", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mouse4302barcodevecs/post-link.sh b/recipes/bioconductor-mouse4302barcodevecs/post-link.sh
index 3b8b8dba1b88a..ed7160125db4e 100644
--- a/recipes/bioconductor-mouse4302barcodevecs/post-link.sh
+++ b/recipes/bioconductor-mouse4302barcodevecs/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "mouse4302barcodevecs-1.38.0"
+installBiocDataPackage.sh "mouse4302barcodevecs-1.40.0"
diff --git a/recipes/bioconductor-mouse4302cdf/meta.yaml b/recipes/bioconductor-mouse4302cdf/meta.yaml
index 8ab265eec436f..57eb77636c347 100644
--- a/recipes/bioconductor-mouse4302cdf/meta.yaml
+++ b/recipes/bioconductor-mouse4302cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mouse4302cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: bda3463613f958de35c58777db05cec2
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mouse4302cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mouse4302frmavecs/meta.yaml b/recipes/bioconductor-mouse4302frmavecs/meta.yaml
index f7e7a74083c32..22c8cdff80066 100644
--- a/recipes/bioconductor-mouse4302frmavecs/meta.yaml
+++ b/recipes/bioconductor-mouse4302frmavecs/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.5.0" %}
 {% set name = "mouse4302frmavecs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: ec144b381abbe54d696356c1c124e372
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mouse4302frmavecs", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mouse4302probe/meta.yaml b/recipes/bioconductor-mouse4302probe/meta.yaml
index c2556746c00f9..6da34b4b12cbc 100644
--- a/recipes/bioconductor-mouse4302probe/meta.yaml
+++ b/recipes/bioconductor-mouse4302probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mouse4302probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 7116787a7db241a545e79e419a8cfa0d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mouse4302probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mouse430a2.db/meta.yaml b/recipes/bioconductor-mouse430a2.db/meta.yaml
index 4a05a16ffe54c..29f8490359d73 100644
--- a/recipes/bioconductor-mouse430a2.db/meta.yaml
+++ b/recipes/bioconductor-mouse430a2.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "mouse430a2.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 0f1d053517af5f973f3cc49289cca1e5
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mouse430a2.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mouse430a2cdf/meta.yaml b/recipes/bioconductor-mouse430a2cdf/meta.yaml
index b120d005cf0e3..e6b2a4871edaf 100644
--- a/recipes/bioconductor-mouse430a2cdf/meta.yaml
+++ b/recipes/bioconductor-mouse430a2cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mouse430a2cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 1114c0415d1200bc21ad205e0830b075
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mouse430a2cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mouse430a2frmavecs/meta.yaml b/recipes/bioconductor-mouse430a2frmavecs/meta.yaml
index b15791ee611b3..885f3133c6c45 100644
--- a/recipes/bioconductor-mouse430a2frmavecs/meta.yaml
+++ b/recipes/bioconductor-mouse430a2frmavecs/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.0" %}
 {% set name = "mouse430a2frmavecs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 3bcb8de9182bbb8de5d560748eafa0cc
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mouse430a2frmavecs", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mouse430a2probe/meta.yaml b/recipes/bioconductor-mouse430a2probe/meta.yaml
index b6d9a39038733..9891dca3ac191 100644
--- a/recipes/bioconductor-mouse430a2probe/meta.yaml
+++ b/recipes/bioconductor-mouse430a2probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mouse430a2probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: bb3c34477d4fcf03a539772011118795
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mouse430a2probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mousechrloc/meta.yaml b/recipes/bioconductor-mousechrloc/meta.yaml
index 0be1b73b5ae0c..97f1bb6f99725 100644
--- a/recipes/bioconductor-mousechrloc/meta.yaml
+++ b/recipes/bioconductor-mousechrloc/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.1.6" %}
 {% set name = "mouseCHRLOC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 0b81d7391e628cc355af4de3c5585a5f
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mousechrloc", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mousefm/meta.yaml b/recipes/bioconductor-mousefm/meta.yaml
index 895f5a44886b4..c7958d978dad0 100644
--- a/recipes/bioconductor-mousefm/meta.yaml
+++ b/recipes/bioconductor-mousefm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "MouseFM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 146c8308ce2ca568d5aed58b37471960
+  md5: 02947a619a95abf1ad58bb781953a22d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mousefm", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, testthat, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-curl
     - r-data.table
@@ -38,10 +39,10 @@ requirements:
     - r-scales
     - r-tidyr
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-curl
     - r-data.table
diff --git a/recipes/bioconductor-mousegastrulationdata/meta.yaml b/recipes/bioconductor-mousegastrulationdata/meta.yaml
index e3a086be85ff4..c6470676bb06c 100644
--- a/recipes/bioconductor-mousegastrulationdata/meta.yaml
+++ b/recipes/bioconductor-mousegastrulationdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "MouseGastrulationData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 671b5016215ff92409c4aba1f4a59c16
+  md5: 4af06fb157942c6cfd9f24494bd7ae1f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mousegastrulationdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bumpymatrix >=1.8.0,<1.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bumpymatrix >=1.10.0,<1.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bumpymatrix >=1.8.0,<1.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bumpymatrix >=1.10.0,<1.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mousegastrulationdata/post-link.sh b/recipes/bioconductor-mousegastrulationdata/post-link.sh
index 8e592cd3fa57a..62b2c9b8a5dae 100644
--- a/recipes/bioconductor-mousegastrulationdata/post-link.sh
+++ b/recipes/bioconductor-mousegastrulationdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "mousegastrulationdata-1.14.0"
+installBiocDataPackage.sh "mousegastrulationdata-1.16.0"
diff --git a/recipes/bioconductor-mousethymusageing/meta.yaml b/recipes/bioconductor-mousethymusageing/meta.yaml
index ced8a4b35d2a2..0f159f50427ac 100644
--- a/recipes/bioconductor-mousethymusageing/meta.yaml
+++ b/recipes/bioconductor-mousethymusageing/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "MouseThymusAgeing" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e5453bec0eab9aa18f7f438bbfd63c27
+  md5: cf1889c22fa9e5ac5899a4d911907a90
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mousethymusageing", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, scuttle, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mousethymusageing/post-link.sh b/recipes/bioconductor-mousethymusageing/post-link.sh
index abdcde4f7eb4f..f63c5f266662c 100644
--- a/recipes/bioconductor-mousethymusageing/post-link.sh
+++ b/recipes/bioconductor-mousethymusageing/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "mousethymusageing-1.8.0"
+installBiocDataPackage.sh "mousethymusageing-1.10.0"
diff --git a/recipes/bioconductor-mpedbarray.db/meta.yaml b/recipes/bioconductor-mpedbarray.db/meta.yaml
index ae5e294805f59..b919b9c2456b9 100644
--- a/recipes/bioconductor-mpedbarray.db/meta.yaml
+++ b/recipes/bioconductor-mpedbarray.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "mpedbarray.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 7bcd1fee1554b6f8844c9bf30b7db4ef
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mpedbarray.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mpfe/meta.yaml b/recipes/bioconductor-mpfe/meta.yaml
index 22a5c1def59bb..b632910f132e4 100644
--- a/recipes/bioconductor-mpfe/meta.yaml
+++ b/recipes/bioconductor-mpfe/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "MPFE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d9941cf06f60869ff2770e087bf835ab
+  md5: 4f86c179f9bc43d1e16295df91c07cb8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mpfe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-mpo.db/meta.yaml b/recipes/bioconductor-mpo.db/meta.yaml
new file mode 100644
index 0000000000000..1e7309a1611e8
--- /dev/null
+++ b/recipes/bioconductor-mpo.db/meta.yaml
@@ -0,0 +1,46 @@
+{% set version = "0.99.7" %}
+{% set name = "MPO.db" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 1f1b83d5d03d69a82ca2b9e7179b537f
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mpo.db", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: rmarkdown, knitr, testthat (>= 3.0.0)
+requirements:
+  host:
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - r-base
+    - r-dbi
+  run:
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - r-base
+    - r-dbi
+    - curl
+    - 'bioconductor-data-packages >=20231203'
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'A set of annotation maps describing the Mouse Phenotype Ontology'
+  description: 'We have developed the human disease ontology R package HDO.db, which provides the semantic relationship between human diseases. Relying on the DOSE and GOSemSim packages we developed, we can carry out disease enrichment and semantic similarity analyses. Many biological studies are achieved through mouse models, and a large number of data indicate the association between genotypes and phenotypes or diseases.  The study of model organisms can be transformed into useful knowledge about normal human biology and disease to facilitate treatment and early screening for diseases. Organism-specific genotype-phenotypic associations can be applied to cross-species phenotypic studies to clarify previously unknown phenotypic connections in other species. Using the same principle to diseases can identify genetic associations and even help to identify disease associations that are not obvious. Therefore, as a supplement to HDO.db and DOSE, we developed mouse phenotypic ontology R package MPO.db.'
+
diff --git a/recipes/bioconductor-mpo.db/post-link.sh b/recipes/bioconductor-mpo.db/post-link.sh
new file mode 100644
index 0000000000000..e54b8c62eb857
--- /dev/null
+++ b/recipes/bioconductor-mpo.db/post-link.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+installBiocDataPackage.sh "mpo.db-0.99.7"
diff --git a/recipes/bioconductor-mpo.db/pre-unlink.sh b/recipes/bioconductor-mpo.db/pre-unlink.sh
new file mode 100644
index 0000000000000..0a46c236ab5a1
--- /dev/null
+++ b/recipes/bioconductor-mpo.db/pre-unlink.sh
@@ -0,0 +1 @@
+R CMD REMOVE --library=$PREFIX/lib/R/library/ MPO.db
diff --git a/recipes/bioconductor-mpra/meta.yaml b/recipes/bioconductor-mpra/meta.yaml
index feca4df94b4aa..c7695063b2da4 100644
--- a/recipes/bioconductor-mpra/meta.yaml
+++ b/recipes/bioconductor-mpra/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "mpra" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 46586d5c53b2dd30ac5c51ca48ffc54a
+  md5: ee3c8c16534188d568ee8f0e01afb894
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mpra", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, RUnit
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-scales
     - r-statmod
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-scales
     - r-statmod
diff --git a/recipes/bioconductor-mpranalyze/meta.yaml b/recipes/bioconductor-mpranalyze/meta.yaml
index 8bbc71f1d89ef..d750c44c0fcf3 100644
--- a/recipes/bioconductor-mpranalyze/meta.yaml
+++ b/recipes/bioconductor-mpranalyze/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "MPRAnalyze" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7fefa718bdfc973d4d43150fc54848e0
+  md5: 63ae4121bc319692b51499a1b151dffc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mpranalyze", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-progress
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-progress
 test:
diff --git a/recipes/bioconductor-mqmetrics/meta.yaml b/recipes/bioconductor-mqmetrics/meta.yaml
index 573e3690b8c3c..22405f3ac0796 100644
--- a/recipes/bioconductor-mqmetrics/meta.yaml
+++ b/recipes/bioconductor-mqmetrics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "MQmetrics" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c4519a7303cf121235ab8028b6ed775d
+  md5: 6c0c8bd3d356ed2db8d6329fd21958d0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mqmetrics", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 3.0.0), BiocStyle
 requirements:
diff --git a/recipes/bioconductor-msa/meta.yaml b/recipes/bioconductor-msa/meta.yaml
index fdd875fa6c032..3b02f9e8d1d8f 100644
--- a/recipes/bioconductor-msa/meta.yaml
+++ b/recipes/bioconductor-msa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "msa" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 261f13d3751fe96b50e9745091278ca0
+  md5: 78eba41452ffe497e1a7c72116335b3e
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msa", max_pin="x.x") }}'
 # Suggests: Biobase, knitr, seqinr, ape (>= 5.1), phangorn
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-rcpp >=0.11.1'
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-rcpp >=0.11.1'
   build:
@@ -51,3 +52,8 @@ about:
   description: 'The ''msa'' package provides a unified R/Bioconductor interface to the multiple sequence alignment algorithms ClustalW, ClustalOmega, and Muscle. All three algorithms are integrated in the package, therefore, they do not depend on any external software tools and are available for all major platforms. The multiple sequence alignment algorithms are complemented by a function for pretty-printing multiple sequence alignments using the LaTeX package TeXshade.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
diff --git a/recipes/bioconductor-msa2dist/meta.yaml b/recipes/bioconductor-msa2dist/meta.yaml
index dd53d926e5525..64b19c561480a 100644
--- a/recipes/bioconductor-msa2dist/meta.yaml
+++ b/recipes/bioconductor-msa2dist/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "MSA2dist" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 69cf471088b61e2f4ce253992ace214a
+  md5: 8a0d1c303af72c93a1810488010c2e6f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msa2dist", max_pin="x.x") }}'
 # Suggests: rmarkdown, knitr, devtools, testthat, ggplot2, BiocStyle
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-ape
     - r-base
     - r-doparallel
@@ -40,9 +41,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-ape
     - r-base
     - r-doparallel
diff --git a/recipes/bioconductor-msbackendmassbank/meta.yaml b/recipes/bioconductor-msbackendmassbank/meta.yaml
index e74c7a50c242d..dc48b7c227b93 100644
--- a/recipes/bioconductor-msbackendmassbank/meta.yaml
+++ b/recipes/bioconductor-msbackendmassbank/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.1" %}
 {% set name = "MsBackendMassbank" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: bbf939d9164027370b91ee2f052dd7af
+  md5: a929aebecff77108bc62891bc397f057
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msbackendmassbank", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr (>= 1.1.0), roxygen2, BiocStyle (>= 2.5.19), RSQLite, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-spectra >=1.10.0,<1.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spectra >=1.12.0,<1.13.0'
     - r-base
     - r-dbi
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-spectra >=1.10.0,<1.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spectra >=1.12.0,<1.13.0'
     - r-base
     - r-dbi
 test:
diff --git a/recipes/bioconductor-msbackendmgf/meta.yaml b/recipes/bioconductor-msbackendmgf/meta.yaml
index b023175e1c9c3..87335b6ed47d8 100644
--- a/recipes/bioconductor-msbackendmgf/meta.yaml
+++ b/recipes/bioconductor-msbackendmgf/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "MsBackendMgf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 161fa6e31b677cc2e2f9f9a505f7365b
+  md5: a8b5cc0b0f9c2da6222c217ae8a4c44f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msbackendmgf", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr (>= 1.1.0), roxygen2, BiocStyle (>= 2.5.19), rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-spectra >=1.10.0,<1.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spectra >=1.12.0,<1.13.0'
     - r-base
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-spectra >=1.10.0,<1.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spectra >=1.12.0,<1.13.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-msbackendmsp/meta.yaml b/recipes/bioconductor-msbackendmsp/meta.yaml
index 75f54a1b70ccb..34df8b380d30c 100644
--- a/recipes/bioconductor-msbackendmsp/meta.yaml
+++ b/recipes/bioconductor-msbackendmsp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "MsBackendMsp" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5b0c87f4dd11f453f3fdd531640413d4
+  md5: 805d831547106b2f232bb9eda75172bc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msbackendmsp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr (>= 1.1.0), roxygen2, BiocStyle (>= 2.5.19), rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-spectra >=1.10.0,<1.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spectra >=1.12.0,<1.13.0'
     - r-base
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-spectra >=1.10.0,<1.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spectra >=1.12.0,<1.13.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-msbackendrawfilereader/meta.yaml b/recipes/bioconductor-msbackendrawfilereader/meta.yaml
index e6d27818945ae..ebd428e4ee072 100644
--- a/recipes/bioconductor-msbackendrawfilereader/meta.yaml
+++ b/recipes/bioconductor-msbackendrawfilereader/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.1" %}
 {% set name = "MsBackendRawFileReader" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3e2d39d098ace938f7b5e26b18045acc
+  md5: b933c2e4fbd38b9cc8298a9cb397b5ad
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msbackendrawfilereader", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle (>= 2.5), ExperimentHub, MsBackendMgf, knitr, lattice, mzR, protViz (>= 0.7), rmarkdown, tartare (>= 1.5), testthat
 # SystemRequirements: mono-runtime 4.x or higher (including System.Data library) on Linux/macOS, .Net Framework (>= 4.5.1) on Microsoft Windows.
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-rawrr >=1.8.0,<1.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-spectra >=1.10.0,<1.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-rawrr >=1.10.0,<1.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spectra >=1.12.0,<1.13.0'
     - r-base
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-rawrr >=1.8.0,<1.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-spectra >=1.10.0,<1.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-rawrr >=1.10.0,<1.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spectra >=1.12.0,<1.13.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-msbackendsql/meta.yaml b/recipes/bioconductor-msbackendsql/meta.yaml
index 42926a7a93c1d..ebd150923cd74 100644
--- a/recipes/bioconductor-msbackendsql/meta.yaml
+++ b/recipes/bioconductor-msbackendsql/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.1" %}
+{% set version = "1.2.0" %}
 {% set name = "MsBackendSql" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 750baf1c6b633a31eb5e8ed0ccb74887
+  md5: c5d7c6ce9c877e7c0bbbc1b63a71eb70
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msbackendsql", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr (>= 1.1.0), roxygen2, BiocStyle (>= 2.5.19), RSQLite, msdata, rmarkdown, microbenchmark, mzR
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-spectra >=1.10.0,<1.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spectra >=1.12.0,<1.13.0'
     - r-base
     - r-data.table
     - r-dbi
     - r-progress
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-spectra >=1.10.0,<1.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spectra >=1.12.0,<1.13.0'
     - r-base
     - r-data.table
     - r-dbi
diff --git a/recipes/bioconductor-mscoreutils/meta.yaml b/recipes/bioconductor-mscoreutils/meta.yaml
index e47c8407560ae..e3dad78d9e43e 100644
--- a/recipes/bioconductor-mscoreutils/meta.yaml
+++ b/recipes/bioconductor-mscoreutils/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.1" %}
 {% set name = "MsCoreUtils" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,16 +11,17 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e1a918ab120b13cee142f6ae08898d0a
+  md5: 163cc129bc77ed033c124fed5bf7d9ca
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
-# Suggests: testthat, knitr, BiocStyle, rmarkdown, roxygen2, imputeLCMD, impute, norm, norm2, pcaMethods, vsn, Matrix, preprocessCore, missForest
+  run_exports: '{{ pin_subpackage("bioconductor-mscoreutils", max_pin="x.x") }}'
+# Suggests: testthat, knitr, BiocStyle, rmarkdown, roxygen2, imputeLCMD, impute, norm, pcaMethods, vsn, Matrix, preprocessCore, missForest
 requirements:
   host:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-clue
     - r-mass
@@ -28,7 +29,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-clue
     - r-mass
@@ -46,3 +47,10 @@ about:
   summary: 'Core Utils for Mass Spectrometry Data'
   description: 'MsCoreUtils defines low-level functions for mass spectrometry data and is independent of any high-level data structures. These functions include mass spectra processing functions (noise estimation, smoothing, binning), quantitative aggregation functions (median polish, robust summarisation, ...), missing data imputation, data normalisation (quantiles, vsn, ...) as well as misc helper functions, that are used across high-level data structure within the R for Mass Spectrometry packages.'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
+    - usegalaxy-eu:{{ name|lower }}
+
diff --git a/recipes/bioconductor-msd16s/meta.yaml b/recipes/bioconductor-msd16s/meta.yaml
index fa6623c0cc230..093763b193ce2 100644
--- a/recipes/bioconductor-msd16s/meta.yaml
+++ b/recipes/bioconductor-msd16s/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "msd16s" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 48cc66a74ec0aeff91a4c5217f69c57d
+  md5: fddb80467192bbe28bb92599941be5d3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msd16s", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-metagenomeseq >=1.42.0,<1.43.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-metagenomeseq >=1.43.0,<1.44.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-metagenomeseq >=1.42.0,<1.43.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-metagenomeseq >=1.43.0,<1.44.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-msd16s/post-link.sh b/recipes/bioconductor-msd16s/post-link.sh
index eb39e5c656947..62fa20ab286f1 100644
--- a/recipes/bioconductor-msd16s/post-link.sh
+++ b/recipes/bioconductor-msd16s/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "msd16s-1.20.0"
+installBiocDataPackage.sh "msd16s-1.22.0"
diff --git a/recipes/bioconductor-msdata/meta.yaml b/recipes/bioconductor-msdata/meta.yaml
index 3524f3b40f8d2..a93c158772cf0 100644
--- a/recipes/bioconductor-msdata/meta.yaml
+++ b/recipes/bioconductor-msdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.40.0" %}
+{% set version = "0.42.0" %}
 {% set name = "msdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: dc6c949e6d593b4220d08511155b9316
+  md5: 3ef7fea0866799a767fb8ac2d1da0a16
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: xcms, mzR, MSnbase
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-msdata/post-link.sh b/recipes/bioconductor-msdata/post-link.sh
index 183325d55e1d2..d125e3b63b591 100644
--- a/recipes/bioconductor-msdata/post-link.sh
+++ b/recipes/bioconductor-msdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "msdata-0.40.0"
+installBiocDataPackage.sh "msdata-0.42.0"
diff --git a/recipes/bioconductor-msdatahub/meta.yaml b/recipes/bioconductor-msdatahub/meta.yaml
index 461800d7ef3c1..2e0d17ac40a1a 100644
--- a/recipes/bioconductor-msdatahub/meta.yaml
+++ b/recipes/bioconductor-msdatahub/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "MsDataHub" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c683540dc7f74f68fbd233970fda9a51
+  md5: f355465b6b3994491364cbe994e4488d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msdatahub", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ExperimentHubData, DT, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), Spectra, mzR, PSMatch, QFeatures
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-msexperiment/meta.yaml b/recipes/bioconductor-msexperiment/meta.yaml
index 23cb602f88adb..13793f29ea8ce 100644
--- a/recipes/bioconductor-msexperiment/meta.yaml
+++ b/recipes/bioconductor-msexperiment/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "MsExperiment" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6ef4ff755bcf01849577c7ab9393eb49
+  md5: b248141f2ad9d5421d067b7f90a4c87e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msexperiment", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr (>= 1.1.0), roxygen2, BiocStyle (>= 2.5.19), rmarkdown, rpx, mzR, msdata
 requirements:
   host:
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-qfeatures >=1.10.0,<1.11.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-spectra >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-qfeatures >=1.12.0,<1.13.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spectra >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-qfeatures >=1.10.0,<1.11.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-spectra >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-qfeatures >=1.12.0,<1.13.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spectra >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-msfeatures/meta.yaml b/recipes/bioconductor-msfeatures/meta.yaml
index 805d24a097fad..f2f78d9cab20a 100644
--- a/recipes/bioconductor-msfeatures/meta.yaml
+++ b/recipes/bioconductor-msfeatures/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "MsFeatures" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3100535245dfbd18aacb93a38a7db53c
+  md5: 326a08270ef7c22e636f1fed4cf569b6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msfeatures", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, roxygen2, BiocStyle, pheatmap, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-msgbsr/meta.yaml b/recipes/bioconductor-msgbsr/meta.yaml
index 51513290152d2..945baebb54043 100644
--- a/recipes/bioconductor-msgbsr/meta.yaml
+++ b/recipes/bioconductor-msgbsr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "msgbsR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,45 +11,46 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 091994f16f89c9151c5f5625d3fcbf23
+  md5: 41ae41a9216ffbe0ee9c51a91f89112c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msgbsr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: roxygen2, BSgenome.Rnorvegicus.UCSC.rn6
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-easyrnaseq >=2.36.0,<2.37.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-easyrnaseq >=2.38.0,<2.39.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-plyr
     - r-r.utils
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-easyrnaseq >=2.36.0,<2.37.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-easyrnaseq >=2.38.0,<2.39.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-plyr
diff --git a/recipes/bioconductor-msigdb/meta.yaml b/recipes/bioconductor-msigdb/meta.yaml
index 51c8be04e8ebd..04f7f6cf90356 100644
--- a/recipes/bioconductor-msigdb/meta.yaml
+++ b/recipes/bioconductor-msigdb/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "msigdb" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 1468865f501a46ee6410f5fac54d9441
+  md5: eb5822dab5f9ad68cc5a46beaf626de0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msigdb", max_pin="x.x") }}'
   noarch: generic
 # Suggests: singscore, vissE, knitr, prettydoc, BiocStyle, rmarkdown, testthat (>= 3.0.0), BiocFileCache, GO.db, stringr, limma
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-msigdb/post-link.sh b/recipes/bioconductor-msigdb/post-link.sh
index 2b9b4297b4376..62fbfe5ec1ef4 100644
--- a/recipes/bioconductor-msigdb/post-link.sh
+++ b/recipes/bioconductor-msigdb/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "msigdb-1.8.0"
+installBiocDataPackage.sh "msigdb-1.10.0"
diff --git a/recipes/bioconductor-msimpute/meta.yaml b/recipes/bioconductor-msimpute/meta.yaml
index 6a1a8598b3119..3da17fd266353 100644
--- a/recipes/bioconductor-msimpute/meta.yaml
+++ b/recipes/bioconductor-msimpute/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "msImpute" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 66df74b17cee32a58263c3f8ff86ab65
+  md5: 493d744acd5f63e07590f22b2ce0eea2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msimpute", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, ComplexHeatmap, imputeLCMD
 # SystemRequirements: python
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -35,8 +36,8 @@ requirements:
     - r-softimpute
     - r-tidyr
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
     - r-base
     - r-data.table
     - r-dplyr
diff --git a/recipes/bioconductor-mslp/meta.yaml b/recipes/bioconductor-mslp/meta.yaml
index b701deb301f74..cffb95da2b231 100644
--- a/recipes/bioconductor-mslp/meta.yaml
+++ b/recipes/bioconductor-mslp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "mslp" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 1ce8ff13dcb84461ad3044da4fa1d95d
+  md5: 8d78607401143e315c9ad75923a0c9c5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mslp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, doFuture, future, knitr, rmarkdown, roxygen2, tinytest
 requirements:
   host:
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rankprod >=3.26.0,<3.27.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rankprod >=3.28.0,<3.29.0'
     - r-base
     - 'r-data.table >=1.13.0'
     - r-dorng
@@ -32,8 +33,8 @@ requirements:
     - r-proc
     - r-randomforest
   run:
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rankprod >=3.26.0,<3.27.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rankprod >=3.28.0,<3.29.0'
     - r-base
     - 'r-data.table >=1.13.0'
     - r-dorng
diff --git a/recipes/bioconductor-msmb/meta.yaml b/recipes/bioconductor-msmb/meta.yaml
index c0651e7ad2023..75d847b490453 100644
--- a/recipes/bioconductor-msmb/meta.yaml
+++ b/recipes/bioconductor-msmb/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "MSMB" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6d9b11ea89215a562d46146b97e3208e
+  md5: bc2942708f54a40d59ce7e41daff7df0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msmb", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle
 requirements:
@@ -27,7 +28,7 @@ requirements:
     - r-base
     - r-tibble
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-msmb/post-link.sh b/recipes/bioconductor-msmb/post-link.sh
index 06758ac01f71c..3244b61f86248 100644
--- a/recipes/bioconductor-msmb/post-link.sh
+++ b/recipes/bioconductor-msmb/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "msmb-1.18.0"
+installBiocDataPackage.sh "msmb-1.20.0"
diff --git a/recipes/bioconductor-msmseda/meta.yaml b/recipes/bioconductor-msmseda/meta.yaml
index abd89b96a49e9..71435d318c253 100644
--- a/recipes/bioconductor-msmseda/meta.yaml
+++ b/recipes/bioconductor-msmseda/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "msmsEDA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2cc93eaf5f937a738bcde6c7827142b7
+  md5: d2350677044dfea55c25faa434894cb2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msmseda", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
     - r-base
     - r-gplots
     - r-mass
     - r-rcolorbrewer
   run:
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
     - r-base
     - r-gplots
     - r-mass
diff --git a/recipes/bioconductor-msmstests/meta.yaml b/recipes/bioconductor-msmstests/meta.yaml
index cf1e2f7ba84e2..f842cafcbe067 100644
--- a/recipes/bioconductor-msmstests/meta.yaml
+++ b/recipes/bioconductor-msmstests/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "msmsTests" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 14ec34cafa4bce236590d54cd072aca8
+  md5: 90c08df612ce3e4608ab3b9fa048764a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msmstests", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-msmseda >=1.38.0,<1.39.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-msmseda >=1.40.0,<1.41.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
   run:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-msmseda >=1.38.0,<1.39.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-msmseda >=1.40.0,<1.41.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-msnbase/meta.yaml b/recipes/bioconductor-msnbase/meta.yaml
index 03c1307ba1595..9ee30e970c999 100644
--- a/recipes/bioconductor-msnbase/meta.yaml
+++ b/recipes/bioconductor-msnbase/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.26.0" %}
+{% set version = "2.28.1" %}
 {% set name = "MSnbase" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f68f7e648144f82ce9926ca58b575a23
+  md5: 4d3cbd696e9ca193ec9bdc4722f2ac49
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msnbase", max_pin="x.x") }}'
 # Suggests: testthat, pryr, gridExtra, microbenchmark, zoo, knitr (>= 1.1.0), rols, Rdisop, pRoloc, pRolocdata (>= 1.7.1), msdata (>= 0.19.3), roxygen2, rgl, rpx, AnnotationHub, BiocStyle (>= 2.5.19), rmarkdown, imputeLCMD, norm, gplots, shiny, magrittr, SummarizedExperiment
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-mzid >=1.38.0,<1.39.0'
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-mzid >=1.40.0,<1.41.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-base
     - r-digest
     - r-ggplot2
@@ -46,19 +47,19 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-mzid >=1.38.0,<1.39.0'
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-mzid >=1.40.0,<1.41.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-base
     - r-digest
     - r-ggplot2
@@ -82,6 +83,8 @@ about:
   summary: 'Base Functions and Classes for Mass Spectrometry and Proteomics'
   description: 'MSnbase provides infrastructure for manipulation, processing and visualisation of mass spectrometry and proteomics data, ranging from raw to quantitative and annotated data.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:msnbase
   parent_recipe:
diff --git a/recipes/bioconductor-msnid/meta.yaml b/recipes/bioconductor-msnid/meta.yaml
index e5617ace168c0..2c78af9e2fe61 100644
--- a/recipes/bioconductor-msnid/meta.yaml
+++ b/recipes/bioconductor-msnid/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "MSnID" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: be86f620a2146c8c3d84cf9b095b1898
+  md5: e0491fe4f99deb1c0128ab4dcde8f3f3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msnid", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-msmstests >=1.38.0,<1.39.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-mzid >=1.38.0,<1.39.0'
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-msmstests >=1.40.0,<1.41.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-mzid >=1.40.0,<1.41.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
     - r-base
     - r-data.table
     - r-doparallel
@@ -49,17 +50,17 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-msmstests >=1.38.0,<1.39.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-mzid >=1.38.0,<1.39.0'
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-msmstests >=1.40.0,<1.41.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-mzid >=1.40.0,<1.41.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
     - r-base
     - r-data.table
     - r-doparallel
diff --git a/recipes/bioconductor-msprep/meta.yaml b/recipes/bioconductor-msprep/meta.yaml
index 438b4348fd63e..a6f5d896e023c 100644
--- a/recipes/bioconductor-msprep/meta.yaml
+++ b/recipes/bioconductor-msprep/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "MSPrep" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f1732ab760da9c7217119d26609efc56
+  md5: 65036a0ebe0b1280a2c4666c263a6e5f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msprep", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 1.0.2)
 requirements:
   host:
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-crmn
     - 'r-dplyr >=0.7'
@@ -37,11 +38,11 @@ requirements:
     - r-tidyr
     - r-vim
   run:
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-crmn
     - 'r-dplyr >=0.7'
diff --git a/recipes/bioconductor-mspurity/meta.yaml b/recipes/bioconductor-mspurity/meta.yaml
index c35428558a1b7..3dcb43f28b697 100644
--- a/recipes/bioconductor-mspurity/meta.yaml
+++ b/recipes/bioconductor-mspurity/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "msPurity" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,16 +11,17 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0bef4ca96c52c5c6ee0ba8b4a454ec8c
+  md5: 0a29b8f3eacf707bf9791d50df53083a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mspurity", max_pin="x.x") }}'
 # Suggests: MSnbase, testthat, xcms, BiocStyle, knitr, rmarkdown, msPurityData, CAMERA, RPostgres, RMySQL
 requirements:
   host:
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
     - r-base
     - r-dbi
     - r-dbplyr
@@ -38,7 +39,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
     - r-base
     - r-dbi
     - r-dbplyr
diff --git a/recipes/bioconductor-mspuritydata/meta.yaml b/recipes/bioconductor-mspuritydata/meta.yaml
index 93d318ef1d154..52332729fbed8 100644
--- a/recipes/bioconductor-mspuritydata/meta.yaml
+++ b/recipes/bioconductor-mspuritydata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "msPurityData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 758e960ac371d347930ab01398f27127
+  md5: 6c86343515cbb9f81131baa3f25659f0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mspuritydata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mspuritydata/post-link.sh b/recipes/bioconductor-mspuritydata/post-link.sh
index c975c68fe6f81..7b9e5d412b057 100644
--- a/recipes/bioconductor-mspuritydata/post-link.sh
+++ b/recipes/bioconductor-mspuritydata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "mspuritydata-1.28.0"
+installBiocDataPackage.sh "mspuritydata-1.30.0"
diff --git a/recipes/bioconductor-msqc1/meta.yaml b/recipes/bioconductor-msqc1/meta.yaml
index 1ace9e6f47bf7..b1e92a856601d 100644
--- a/recipes/bioconductor-msqc1/meta.yaml
+++ b/recipes/bioconductor-msqc1/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "msqc1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: eec753dc0f640e28b06685127ac3794e
+  md5: a95a760a0c0ef5e8053acee1d59170a4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msqc1", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, specL (>= 1.2)
 requirements:
@@ -27,7 +28,7 @@ requirements:
     - r-base
     - r-lattice
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-msqc1/post-link.sh b/recipes/bioconductor-msqc1/post-link.sh
index 61a449edfbb82..7c052c8f8c306 100644
--- a/recipes/bioconductor-msqc1/post-link.sh
+++ b/recipes/bioconductor-msqc1/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "msqc1-1.28.0"
+installBiocDataPackage.sh "msqc1-1.30.0"
diff --git a/recipes/bioconductor-msqrob2/meta.yaml b/recipes/bioconductor-msqrob2/meta.yaml
index 533a90b1cd280..5084c4368d7b3 100644
--- a/recipes/bioconductor-msqrob2/meta.yaml
+++ b/recipes/bioconductor-msqrob2/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "msqrob2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 47e977ca03352478eee88298fb305024
+  md5: b2c0046b0c67c24dd7d94eeb22fea3a8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msqrob2", max_pin="x.x") }}'
   noarch: generic
 # Suggests: multcomp, gridExtra, knitr, BiocStyle, RefManageR, sessioninfo, rmarkdown, testthat, tidyverse, plotly, msdata, MSnbase, matrixStats, MsCoreUtils, covr
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-qfeatures >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-qfeatures >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-codetools
     - r-lme4
@@ -33,11 +34,11 @@ requirements:
     - r-matrix
     - r-purrr
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-qfeatures >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-qfeatures >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-codetools
     - r-lme4
diff --git a/recipes/bioconductor-msquality/meta.yaml b/recipes/bioconductor-msquality/meta.yaml
index 1db6c970dcc1b..541bf61068252 100644
--- a/recipes/bioconductor-msquality/meta.yaml
+++ b/recipes/bioconductor-msquality/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "MsQuality" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,38 +11,43 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9c0813d8ece6db8cec01df6ea741da18
+  md5: 1d8e2101f472e8fc93bfa275db511982
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msquality", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BiocGenerics (>= 0.24.0), BiocStyle (>= 2.6.1), dplyr (>= 1.0.5), knitr (>= 1.11), msdata (>= 0.32.0), mzR (>= 2.32.0), rmarkdown (>= 2.7), S4Vectors (>= 0.29.17), testthat (>= 2.2.1)
+# Suggests: BiocGenerics (>= 0.24.0), BiocStyle (>= 2.6.1), dplyr (>= 1.0.5), knitr (>= 1.11), mzR (>= 2.32.0), rmarkdown (>= 2.7), S4Vectors (>= 0.29.17), testthat (>= 2.2.1)
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-msexperiment >=1.2.0,<1.3.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-spectra >=1.10.0,<1.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-msdata >=0.42.0,<0.43.0'
+    - 'bioconductor-msexperiment >=1.4.0,<1.5.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-spectra >=1.12.0,<1.13.0'
     - r-base
     - 'r-ggplot2 >=3.3.5'
     - 'r-htmlwidgets >=1.5.3'
     - 'r-plotly >=4.9.4.1'
+    - 'r-rmzqc >=0.5.0'
     - 'r-shiny >=1.6.0'
     - 'r-shinydashboard >=0.7.1'
     - 'r-stringr >=1.4.0'
     - 'r-tibble >=3.1.4'
     - 'r-tidyr >=1.1.3'
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-msexperiment >=1.2.0,<1.3.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-spectra >=1.10.0,<1.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-msdata >=0.42.0,<0.43.0'
+    - 'bioconductor-msexperiment >=1.4.0,<1.5.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-spectra >=1.12.0,<1.13.0'
     - r-base
     - 'r-ggplot2 >=3.3.5'
     - 'r-htmlwidgets >=1.5.3'
     - 'r-plotly >=4.9.4.1'
+    - 'r-rmzqc >=0.5.0'
     - 'r-shiny >=1.6.0'
     - 'r-shinydashboard >=0.7.1'
     - 'r-stringr >=1.4.0'
diff --git a/recipes/bioconductor-msstats/meta.yaml b/recipes/bioconductor-msstats/meta.yaml
index 56e1895593f48..16e7cd6050d08 100644
--- a/recipes/bioconductor-msstats/meta.yaml
+++ b/recipes/bioconductor-msstats/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "4.8.3" %}
+{% set version = "4.10.0" %}
 {% set name = "MSstats" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 06dfde9c4e7960e84e1bb35698986b45
+  md5: fac3a495f2e627a75b10a9b941d3674d
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msstats", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, rmarkdown, tinytest, covr, markdown
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
-    - 'bioconductor-msstatsconvert >=1.10.0,<1.11.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
+    - 'bioconductor-msstatsconvert >=1.12.0,<1.13.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-checkmate
     - r-data.table
@@ -39,10 +40,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
-    - 'bioconductor-msstatsconvert >=1.10.0,<1.11.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
+    - 'bioconductor-msstatsconvert >=1.12.0,<1.13.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-checkmate
     - r-data.table
@@ -68,6 +69,8 @@ about:
   summary: 'Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments'
   description: 'A set of tools for statistical relative protein significance analysis in DDA, SRM and DIA experiments.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:msstats
   parent_recipe:
diff --git a/recipes/bioconductor-msstatsbig/build.sh b/recipes/bioconductor-msstatsbig/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-msstatsbig/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-msstatsbig/meta.yaml b/recipes/bioconductor-msstatsbig/meta.yaml
new file mode 100644
index 0000000000000..18aabd0559ba2
--- /dev/null
+++ b/recipes/bioconductor-msstatsbig/meta.yaml
@@ -0,0 +1,50 @@
+{% set version = "1.0.0" %}
+{% set name = "MSstatsBig" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: a53de589b47964296160c6fb8aaeb3b4
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msstatsbig", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: knitr, rmarkdown
+requirements:
+  host:
+    - 'bioconductor-msstats >=4.10.0,<4.11.0'
+    - 'bioconductor-msstatsconvert >=1.12.0,<1.13.0'
+    - r-arrow
+    - r-base
+    - r-dbi
+    - r-dplyr
+    - r-readr
+    - r-sparklyr
+  run:
+    - 'bioconductor-msstats >=4.10.0,<4.11.0'
+    - 'bioconductor-msstatsconvert >=1.12.0,<1.13.0'
+    - r-arrow
+    - r-base
+    - r-dbi
+    - r-dplyr
+    - r-readr
+    - r-sparklyr
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'MSstats Preprocessing for Larger than Memory Data'
+  description: 'MSstats package provide tools for preprocessing, summarization and differential analysis of mass spectrometry (MS) proteomics data. Recently, some MS protocols enable acquisition of data sets that result in larger than memory quantitative data. MSstats functions are not able to process such data. MSstatsBig package provides additional converter functions that enable processing larger than memory data sets.'
+
diff --git a/recipes/bioconductor-msstatsconvert/meta.yaml b/recipes/bioconductor-msstatsconvert/meta.yaml
index f8af78a8eb74d..f5eb9823683aa 100644
--- a/recipes/bioconductor-msstatsconvert/meta.yaml
+++ b/recipes/bioconductor-msstatsconvert/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.3" %}
+{% set version = "1.12.0" %}
 {% set name = "MSstatsConvert" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1c32e16a748d6a0f6fa9d733c3586524
+  md5: 1a8b79ba830db5296c2d3f589b398b7f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msstatsconvert", max_pin="x.x") }}'
   noarch: generic
 # Suggests: tinytest, covr, knitr, rmarkdown
 requirements:
diff --git a/recipes/bioconductor-msstatslip/meta.yaml b/recipes/bioconductor-msstatslip/meta.yaml
index 717f277859654..9f580d896931f 100644
--- a/recipes/bioconductor-msstatslip/meta.yaml
+++ b/recipes/bioconductor-msstatslip/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.1" %}
 {% set name = "MSstatsLiP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b374b82219e6c374a9d8697cf04151ad
+  md5: 677e775b1c84f40715703064cd74faff
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msstatslip", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, rmarkdown, covr, tinytest, gghighlight
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-msstats >=4.8.0,<4.9.0'
-    - 'bioconductor-msstatsconvert >=1.10.0,<1.11.0'
-    - 'bioconductor-msstatsptm >=2.2.0,<2.3.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-msstats >=4.10.0,<4.11.0'
+    - 'bioconductor-msstatsconvert >=1.12.0,<1.13.0'
+    - 'bioconductor-msstatsptm >=2.4.0,<2.5.0'
     - r-base
     - r-checkmate
     - r-data.table
@@ -42,10 +43,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-msstats >=4.8.0,<4.9.0'
-    - 'bioconductor-msstatsconvert >=1.10.0,<1.11.0'
-    - 'bioconductor-msstatsptm >=2.2.0,<2.3.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-msstats >=4.10.0,<4.11.0'
+    - 'bioconductor-msstatsconvert >=1.12.0,<1.13.0'
+    - 'bioconductor-msstatsptm >=2.4.0,<2.5.0'
     - r-base
     - r-checkmate
     - r-data.table
diff --git a/recipes/bioconductor-msstatslobd/meta.yaml b/recipes/bioconductor-msstatslobd/meta.yaml
index bb59795e8d38a..a464e413da1ea 100644
--- a/recipes/bioconductor-msstatslobd/meta.yaml
+++ b/recipes/bioconductor-msstatslobd/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "MSstatsLOBD" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 463905ce41e90270bdf7b7fa3c1098d8
+  md5: 1d67c5813cb057b72100d71487c26f64
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msstatslobd", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, rmarkdown, covr, tinytest, dplyr
 requirements:
   host:
diff --git a/recipes/bioconductor-msstatsptm/meta.yaml b/recipes/bioconductor-msstatsptm/meta.yaml
index d36bbbe5aa754..6ce348235cd97 100644
--- a/recipes/bioconductor-msstatsptm/meta.yaml
+++ b/recipes/bioconductor-msstatsptm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.2.4" %}
+{% set version = "2.4.1" %}
 {% set name = "MSstatsPTM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 145549a30b3191f757ab605d629686bb
+  md5: 73b092b7145deaaa579c525e7d243a1e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msstatsptm", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, tinytest, covr
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-msstats >=4.8.0,<4.9.0'
-    - 'bioconductor-msstatsconvert >=1.10.0,<1.11.0'
-    - 'bioconductor-msstatstmt >=2.8.0,<2.9.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-msstats >=4.10.0,<4.11.0'
+    - 'bioconductor-msstatsconvert >=1.12.0,<1.13.0'
+    - 'bioconductor-msstatstmt >=2.10.0,<2.11.0'
     - r-base
     - r-checkmate
     - r-data.table
@@ -37,10 +38,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-msstats >=4.8.0,<4.9.0'
-    - 'bioconductor-msstatsconvert >=1.10.0,<1.11.0'
-    - 'bioconductor-msstatstmt >=2.8.0,<2.9.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-msstats >=4.10.0,<4.11.0'
+    - 'bioconductor-msstatsconvert >=1.12.0,<1.13.0'
+    - 'bioconductor-msstatstmt >=2.10.0,<2.11.0'
     - r-base
     - r-checkmate
     - r-data.table
diff --git a/recipes/bioconductor-msstatsqc/meta.yaml b/recipes/bioconductor-msstatsqc/meta.yaml
index 86717ae213a79..fd453766efc47 100644
--- a/recipes/bioconductor-msstatsqc/meta.yaml
+++ b/recipes/bioconductor-msstatsqc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.18.0" %}
+{% set version = "2.20.0" %}
 {% set name = "MSstatsQC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e4777a03d82bbf62a75d8731f5131347
+  md5: 9328babd37ae774a13dff37e38088339
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msstatsqc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr,rmarkdown, testthat, RforProteomics
 requirements:
   host:
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-qcmetrics >=1.38.0,<1.39.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-qcmetrics >=1.40.0,<1.41.0'
     - r-base
     - r-dplyr
     - r-ggextra
     - r-ggplot2
     - r-plotly
   run:
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-qcmetrics >=1.38.0,<1.39.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-qcmetrics >=1.40.0,<1.41.0'
     - r-base
     - r-dplyr
     - r-ggextra
diff --git a/recipes/bioconductor-msstatsqcgui/meta.yaml b/recipes/bioconductor-msstatsqcgui/meta.yaml
index 5f7e42ec22a95..acb4bf4a02184 100644
--- a/recipes/bioconductor-msstatsqcgui/meta.yaml
+++ b/recipes/bioconductor-msstatsqcgui/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "MSstatsQCgui" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5a9fb31259f2479840addd189193dd56
+  md5: 1e648f2226907f737e1d7e71a375f01c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msstatsqcgui", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
   host:
-    - 'bioconductor-msstatsqc >=2.18.0,<2.19.0'
+    - 'bioconductor-msstatsqc >=2.20.0,<2.21.0'
     - r-base
     - r-dplyr
     - r-ggextra
@@ -29,7 +30,7 @@ requirements:
     - r-plotly
     - r-shiny
   run:
-    - 'bioconductor-msstatsqc >=2.18.0,<2.19.0'
+    - 'bioconductor-msstatsqc >=2.20.0,<2.21.0'
     - r-base
     - r-dplyr
     - r-ggextra
diff --git a/recipes/bioconductor-msstatsshiny/meta.yaml b/recipes/bioconductor-msstatsshiny/meta.yaml
index c3a7952dbc3d4..0b5bc563d63a4 100644
--- a/recipes/bioconductor-msstatsshiny/meta.yaml
+++ b/recipes/bioconductor-msstatsshiny/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.3" %}
+{% set version = "1.4.1" %}
 {% set name = "MSstatsShiny" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: dd8ced0fd30746c179d8b8fe12f29b0b
+  md5: 4eb74ec920d96afc15079226261224f9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msstatsshiny", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, tinytest, sessioninfo, knitr, testthat (>= 3.0.0), shinytest2, mockery
 requirements:
   host:
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
-    - 'bioconductor-msstats >=4.8.0,<4.9.0'
-    - 'bioconductor-msstatsconvert >=1.10.0,<1.11.0'
-    - 'bioconductor-msstatsptm >=2.2.0,<2.3.0'
-    - 'bioconductor-msstatstmt >=2.8.0,<2.9.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
+    - 'bioconductor-msstats >=4.10.0,<4.11.0'
+    - 'bioconductor-msstatsconvert >=1.12.0,<1.13.0'
+    - 'bioconductor-msstatsptm >=2.4.0,<2.5.0'
+    - 'bioconductor-msstatstmt >=2.10.0,<2.11.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -43,11 +44,11 @@ requirements:
     - r-tidyr
     - r-uuid
   run:
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
-    - 'bioconductor-msstats >=4.8.0,<4.9.0'
-    - 'bioconductor-msstatsconvert >=1.10.0,<1.11.0'
-    - 'bioconductor-msstatsptm >=2.2.0,<2.3.0'
-    - 'bioconductor-msstatstmt >=2.8.0,<2.9.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
+    - 'bioconductor-msstats >=4.10.0,<4.11.0'
+    - 'bioconductor-msstatsconvert >=1.12.0,<1.13.0'
+    - 'bioconductor-msstatsptm >=2.4.0,<2.5.0'
+    - 'bioconductor-msstatstmt >=2.10.0,<2.11.0'
     - r-base
     - r-data.table
     - r-dplyr
diff --git a/recipes/bioconductor-msstatstmt/meta.yaml b/recipes/bioconductor-msstatstmt/meta.yaml
index 1959649a11e22..5ea13afd7ae7c 100644
--- a/recipes/bioconductor-msstatstmt/meta.yaml
+++ b/recipes/bioconductor-msstatstmt/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.8.0" %}
+{% set version = "2.10.0" %}
 {% set name = "MSstatsTMT" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1d471cc96d18a6910e6ffd312f1b8700
+  md5: 73166086fd3882b4771350fde01f37fb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-msstatstmt", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-msstats >=4.8.0,<4.9.0'
-    - 'bioconductor-msstatsconvert >=1.10.0,<1.11.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-msstats >=4.10.0,<4.11.0'
+    - 'bioconductor-msstatsconvert >=1.12.0,<1.13.0'
     - r-base
     - r-checkmate
     - r-data.table
@@ -31,9 +32,9 @@ requirements:
     - r-lme4
     - r-lmertest
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-msstats >=4.8.0,<4.9.0'
-    - 'bioconductor-msstatsconvert >=1.10.0,<1.11.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-msstats >=4.10.0,<4.11.0'
+    - 'bioconductor-msstatsconvert >=1.12.0,<1.13.0'
     - r-base
     - r-checkmate
     - r-data.table
diff --git a/recipes/bioconductor-mta10probeset.db/meta.yaml b/recipes/bioconductor-mta10probeset.db/meta.yaml
index 0c22dc74a8d66..6e88a7ceb061d 100644
--- a/recipes/bioconductor-mta10probeset.db/meta.yaml
+++ b/recipes/bioconductor-mta10probeset.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "mta10probeset.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 84517c6b354690cd72ccefbe3b39d8e1
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mta10probeset.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mta10transcriptcluster.db/meta.yaml b/recipes/bioconductor-mta10transcriptcluster.db/meta.yaml
index cf5b6d76c6d2c..9a39f45852b4d 100644
--- a/recipes/bioconductor-mta10transcriptcluster.db/meta.yaml
+++ b/recipes/bioconductor-mta10transcriptcluster.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "mta10transcriptcluster.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: bfd13b16b71ac2cfc82f40f2d102892b
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mta10transcriptcluster.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mtbls2/meta.yaml b/recipes/bioconductor-mtbls2/meta.yaml
index 7787f4fb6f5e9..fb928253ee251 100644
--- a/recipes/bioconductor-mtbls2/meta.yaml
+++ b/recipes/bioconductor-mtbls2/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "mtbls2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 9f3494d399dd599b5e462dba8bd126bb
+  md5: 820109836c79f398ea5b82f5887b7fea
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mtbls2", max_pin="x.x") }}'
   noarch: generic
 # Suggests: xcms (>= 3.13.8), CAMERA, Risa (>= 1.0.0), knitr, Heatplus, pcaMethods, sp, rmarkdown
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mtbls2/post-link.sh b/recipes/bioconductor-mtbls2/post-link.sh
index a631a19cb959c..0ef2e910328f4 100644
--- a/recipes/bioconductor-mtbls2/post-link.sh
+++ b/recipes/bioconductor-mtbls2/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "mtbls2-1.30.0"
+installBiocDataPackage.sh "mtbls2-1.32.0"
diff --git a/recipes/bioconductor-mu11ksuba.db/meta.yaml b/recipes/bioconductor-mu11ksuba.db/meta.yaml
index dd83c8e9876a7..b55de485fc588 100644
--- a/recipes/bioconductor-mu11ksuba.db/meta.yaml
+++ b/recipes/bioconductor-mu11ksuba.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "mu11ksuba.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 73d80611d1eaf8ee1eb37ebc469d97e9
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mu11ksuba.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mu11ksubacdf/meta.yaml b/recipes/bioconductor-mu11ksubacdf/meta.yaml
index e838910a4056a..b59ac2145b73a 100644
--- a/recipes/bioconductor-mu11ksubacdf/meta.yaml
+++ b/recipes/bioconductor-mu11ksubacdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mu11ksubacdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 52fb8ac56435775022fb62f40efafd22
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mu11ksubacdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mu11ksubaprobe/meta.yaml b/recipes/bioconductor-mu11ksubaprobe/meta.yaml
index 3e8c94ad02544..dcedba4948626 100644
--- a/recipes/bioconductor-mu11ksubaprobe/meta.yaml
+++ b/recipes/bioconductor-mu11ksubaprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mu11ksubaprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 813cd0750cca6ff0cfb696b83286177e
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mu11ksubaprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mu11ksubb.db/meta.yaml b/recipes/bioconductor-mu11ksubb.db/meta.yaml
index ba344620c6ebd..63bb7d8ea3a05 100644
--- a/recipes/bioconductor-mu11ksubb.db/meta.yaml
+++ b/recipes/bioconductor-mu11ksubb.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "mu11ksubb.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 2b61d911c3595843e80041949cb79b41
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mu11ksubb.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mu11ksubbcdf/meta.yaml b/recipes/bioconductor-mu11ksubbcdf/meta.yaml
index 6c076b4d23b69..c998c26278a66 100644
--- a/recipes/bioconductor-mu11ksubbcdf/meta.yaml
+++ b/recipes/bioconductor-mu11ksubbcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mu11ksubbcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: f9691ea74e19dfe57bf6cca6ed396947
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mu11ksubbcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mu11ksubbprobe/meta.yaml b/recipes/bioconductor-mu11ksubbprobe/meta.yaml
index 5c19b7e0d066a..8b5ab818deb4d 100644
--- a/recipes/bioconductor-mu11ksubbprobe/meta.yaml
+++ b/recipes/bioconductor-mu11ksubbprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mu11ksubbprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 28d162e18e4e16e3c6db47195d2ea0ac
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mu11ksubbprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mu15v1.db/meta.yaml b/recipes/bioconductor-mu15v1.db/meta.yaml
index 9e51592eede5f..74f2380efbe7e 100644
--- a/recipes/bioconductor-mu15v1.db/meta.yaml
+++ b/recipes/bioconductor-mu15v1.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "Mu15v1.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: e9297b5fe223b046bc65dc6ea0b4376d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mu15v1.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mu19ksuba.db/meta.yaml b/recipes/bioconductor-mu19ksuba.db/meta.yaml
index a87af58bf9b82..35416f946ef4e 100644
--- a/recipes/bioconductor-mu19ksuba.db/meta.yaml
+++ b/recipes/bioconductor-mu19ksuba.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "mu19ksuba.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: c057d8793f2db914a93d2e1f5a3af178
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mu19ksuba.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mu19ksubacdf/meta.yaml b/recipes/bioconductor-mu19ksubacdf/meta.yaml
index 9c33eba108be9..795c51c9e9101 100644
--- a/recipes/bioconductor-mu19ksubacdf/meta.yaml
+++ b/recipes/bioconductor-mu19ksubacdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mu19ksubacdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 83a9e7a3bac665b655786e66dbd77848
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mu19ksubacdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mu19ksubb.db/meta.yaml b/recipes/bioconductor-mu19ksubb.db/meta.yaml
index 30815c0163287..0dcbb94ef24d0 100644
--- a/recipes/bioconductor-mu19ksubb.db/meta.yaml
+++ b/recipes/bioconductor-mu19ksubb.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "mu19ksubb.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 1b177a3b5626c825c91e7c25e0acd897
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mu19ksubb.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mu19ksubbcdf/meta.yaml b/recipes/bioconductor-mu19ksubbcdf/meta.yaml
index c8bc3b4ce3fce..f36b278a44c54 100644
--- a/recipes/bioconductor-mu19ksubbcdf/meta.yaml
+++ b/recipes/bioconductor-mu19ksubbcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mu19ksubbcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 35e5ebcb4cb51950a85c1e3622bb39f0
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mu19ksubbcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mu19ksubc.db/meta.yaml b/recipes/bioconductor-mu19ksubc.db/meta.yaml
index dcddf61bea78a..2a6ec8567e56b 100644
--- a/recipes/bioconductor-mu19ksubc.db/meta.yaml
+++ b/recipes/bioconductor-mu19ksubc.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "mu19ksubc.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: bef37c9cd01032e9f1fb177a1af8cba4
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mu19ksubc.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mu19ksubccdf/meta.yaml b/recipes/bioconductor-mu19ksubccdf/meta.yaml
index 8e59b4a88c832..a36c87e66abc3 100644
--- a/recipes/bioconductor-mu19ksubccdf/meta.yaml
+++ b/recipes/bioconductor-mu19ksubccdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mu19ksubccdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: e53ef2716f88022e5e41e2cd857fc2a3
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mu19ksubccdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mu22v3.db/meta.yaml b/recipes/bioconductor-mu22v3.db/meta.yaml
index be15e8d840786..2f51fdab19768 100644
--- a/recipes/bioconductor-mu22v3.db/meta.yaml
+++ b/recipes/bioconductor-mu22v3.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "Mu22v3.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 44aaebe909be9b0108256194c55cf6fb
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mu22v3.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mu6500subacdf/meta.yaml b/recipes/bioconductor-mu6500subacdf/meta.yaml
index 0da1ec948f8c1..70ad8c1a4d40a 100644
--- a/recipes/bioconductor-mu6500subacdf/meta.yaml
+++ b/recipes/bioconductor-mu6500subacdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mu6500subacdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: e72152fc4bae307e3858160e018b7f92
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mu6500subacdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mu6500subbcdf/meta.yaml b/recipes/bioconductor-mu6500subbcdf/meta.yaml
index 5d675542693ec..3d1466e9f7e83 100644
--- a/recipes/bioconductor-mu6500subbcdf/meta.yaml
+++ b/recipes/bioconductor-mu6500subbcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mu6500subbcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 5000bea2a018b4b6ec05cda111438bc1
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mu6500subbcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mu6500subccdf/meta.yaml b/recipes/bioconductor-mu6500subccdf/meta.yaml
index 4e28b798416fe..7d7b7e16103de 100644
--- a/recipes/bioconductor-mu6500subccdf/meta.yaml
+++ b/recipes/bioconductor-mu6500subccdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mu6500subccdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: c7cbbe6c70a0a3ae11600ad6c0e540c1
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mu6500subccdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mu6500subdcdf/meta.yaml b/recipes/bioconductor-mu6500subdcdf/meta.yaml
index 548d24141b096..33e237d79d7f6 100644
--- a/recipes/bioconductor-mu6500subdcdf/meta.yaml
+++ b/recipes/bioconductor-mu6500subdcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "mu6500subdcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: a614674e8bc60fefd8520dd25d45f8d0
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mu6500subdcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mudata/meta.yaml b/recipes/bioconductor-mudata/meta.yaml
index b766c63a41b66..bf39d295640fb 100644
--- a/recipes/bioconductor-mudata/meta.yaml
+++ b/recipes/bioconductor-mudata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "MuData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 389ee9f10c659c43649c72093a748e4a
+  md5: 10ef702e87a5f0517e59c1ccb96b08dc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mudata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: HDF5Array, rmarkdown, knitr, fs, testthat, BiocStyle, covr, SingleCellMultiModal, CiteFuse, scater
 requirements:
   host:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
   run:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
 test:
diff --git a/recipes/bioconductor-mugaexampledata/meta.yaml b/recipes/bioconductor-mugaexampledata/meta.yaml
index 3e27f5daa3a80..4141815c412fb 100644
--- a/recipes/bioconductor-mugaexampledata/meta.yaml
+++ b/recipes/bioconductor-mugaexampledata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "MUGAExampleData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0e9d37ebfc20b7c46c5e0d98528dc188
+  md5: b7fe2c7ad41486695fb78263a8c9a854
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mugaexampledata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mugaexampledata/post-link.sh b/recipes/bioconductor-mugaexampledata/post-link.sh
index db9219ea03f72..36035835faa9e 100644
--- a/recipes/bioconductor-mugaexampledata/post-link.sh
+++ b/recipes/bioconductor-mugaexampledata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "mugaexampledata-1.20.0"
+installBiocDataPackage.sh "mugaexampledata-1.22.0"
diff --git a/recipes/bioconductor-mulcom/meta.yaml b/recipes/bioconductor-mulcom/meta.yaml
index 8b1f30c26397a..87516158ebe13 100644
--- a/recipes/bioconductor-mulcom/meta.yaml
+++ b/recipes/bioconductor-mulcom/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.50.0" %}
+{% set version = "1.52.0" %}
 {% set name = "Mulcom" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 959bad703faed95503f5eca2cf9d5152
+  md5: 87375077f62104b18567db2e68a07488
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mulcom", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-fields
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-fields
   build:
diff --git a/recipes/bioconductor-multiassayexperiment/meta.yaml b/recipes/bioconductor-multiassayexperiment/meta.yaml
index 8be82a3ce2582..d65438bca2711 100644
--- a/recipes/bioconductor-multiassayexperiment/meta.yaml
+++ b/recipes/bioconductor-multiassayexperiment/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "MultiAssayExperiment" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 62505a73913bf3c40c77e5c33e779c03
+  md5: 01844376cd208e33797b236e2e65fd77
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-multiassayexperiment", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, HDF5Array (>= 1.19.17), knitr, maftools (>= 2.7.10), rmarkdown, R.rsp, RaggedExperiment, UpSetR, survival, survminer, testthat
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocbaseutils >=1.2.0,<1.3.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocbaseutils >=1.4.0,<1.5.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-tidyr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocbaseutils >=1.2.0,<1.3.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocbaseutils >=1.4.0,<1.5.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-tidyr
 test:
diff --git a/recipes/bioconductor-multibac/meta.yaml b/recipes/bioconductor-multibac/meta.yaml
index c0d4f723b91c1..56235ddd1ac34 100644
--- a/recipes/bioconductor-multibac/meta.yaml
+++ b/recipes/bioconductor-multibac/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "MultiBaC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4469b7a12aea60b8882fb3bccc5fb9e8
+  md5: 5585e9f823074db09f44221063a3e64b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-multibac", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, devtools
 requirements:
   host:
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-ropls >=1.32.0,<1.33.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-ropls >=1.34.0,<1.35.0'
     - r-base
     - r-ggplot2
     - r-matrix
     - r-plotrix
   run:
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-ropls >=1.32.0,<1.33.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-ropls >=1.34.0,<1.35.0'
     - r-base
     - r-ggplot2
     - r-matrix
diff --git a/recipes/bioconductor-multiclust/meta.yaml b/recipes/bioconductor-multiclust/meta.yaml
index 5cf90fae7abc1..93e1c54ad3fec 100644
--- a/recipes/bioconductor-multiclust/meta.yaml
+++ b/recipes/bioconductor-multiclust/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "multiClust" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 88d9663dab3cbdc5ce296edde7632508
+  md5: 86c305cad6c68f0a1850f056dad9615e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-multiclust", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, gplots, RUnit, BiocGenerics, preprocessCore, Biobase, GEOquery
 requirements:
   host:
-    - 'bioconductor-ctc >=1.74.0,<1.75.0'
+    - 'bioconductor-ctc >=1.76.0,<1.77.0'
     - r-amap
     - r-base
     - r-cluster
@@ -29,7 +30,7 @@ requirements:
     - r-mclust
     - r-survival
   run:
-    - 'bioconductor-ctc >=1.74.0,<1.75.0'
+    - 'bioconductor-ctc >=1.76.0,<1.77.0'
     - r-amap
     - r-base
     - r-cluster
diff --git a/recipes/bioconductor-multicrispr/meta.yaml b/recipes/bioconductor-multicrispr/meta.yaml
index dbcfa4f9022e0..fe725d944bd47 100644
--- a/recipes/bioconductor-multicrispr/meta.yaml
+++ b/recipes/bioconductor-multicrispr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.1" %}
+{% set version = "1.12.3" %}
 {% set name = "multicrispr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,33 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: b9bfeb36b38297c0c222e36950b2423a
+  md5: d0bbc847e39772348376d944c884290a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-multicrispr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: AnnotationHub, BiocStyle, BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10, BSgenome.Scerevisiae.UCSC.sacCer1, ensembldb, IRanges, knitr, magick, rmarkdown, testthat, TxDb.Mmusculus.UCSC.mm10.knownGene
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-crisprseek >=1.40.0,<1.41.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-karyoploter >=1.26.0,<1.27.0'
-    - 'bioconductor-plyranges >=1.20.0,<1.21.0'
-    - 'bioconductor-rbowtie >=1.40.0,<1.41.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - r-assertive
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-crisprseek >=1.42.0,<1.43.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-karyoploter >=1.28.0,<1.29.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
+    - 'bioconductor-rbowtie >=1.42.0,<1.43.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - r-assertive.base
+    - r-assertive.files
+    - r-assertive.numbers
+    - r-assertive.reflection
+    - r-assertive.sets
     - r-base
     - r-data.table
     - r-ggplot2
@@ -42,18 +47,22 @@ requirements:
     - r-tidyr
     - r-tidyselect
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-crisprseek >=1.40.0,<1.41.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-karyoploter >=1.26.0,<1.27.0'
-    - 'bioconductor-plyranges >=1.20.0,<1.21.0'
-    - 'bioconductor-rbowtie >=1.40.0,<1.41.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - r-assertive
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-crisprseek >=1.42.0,<1.43.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-karyoploter >=1.28.0,<1.29.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
+    - 'bioconductor-rbowtie >=1.42.0,<1.43.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - r-assertive.base
+    - r-assertive.files
+    - r-assertive.numbers
+    - r-assertive.reflection
+    - r-assertive.sets
     - r-base
     - r-data.table
     - r-ggplot2
diff --git a/recipes/bioconductor-multidataset/meta.yaml b/recipes/bioconductor-multidataset/meta.yaml
index 5766230883d6e..8cbbdbf9d333b 100644
--- a/recipes/bioconductor-multidataset/meta.yaml
+++ b/recipes/bioconductor-multidataset/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "MultiDataSet" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 40343f355c0b2c4824b8dbae2d99a46e
+  md5: 304e6d8ccbb54c446f43f2df5e13f530
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-multidataset", max_pin="x.x") }}'
   noarch: generic
 # Suggests: brgedata, minfi, minfiData, knitr, rmarkdown, testthat, omicade4, iClusterPlus, GEOquery, MultiAssayExperiment, BiocStyle, RaggedExperiment
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-ggrepel
     - r-qqman
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-ggrepel
diff --git a/recipes/bioconductor-multigsea/meta.yaml b/recipes/bioconductor-multigsea/meta.yaml
index aaf5ffda635e0..52e09755c08a2 100644
--- a/recipes/bioconductor-multigsea/meta.yaml
+++ b/recipes/bioconductor-multigsea/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "multiGSEA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 402790b4fd5fe02d3cf9f8c0aec866f3
+  md5: 4f22605155c363e634e9a2ca6afae5c3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-multigsea", max_pin="x.x") }}'
   noarch: generic
 # Suggests: org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, org.Ss.eg.db, org.Bt.eg.db, org.Ce.eg.db, org.Dm.eg.db, org.Dr.eg.db, org.Gg.eg.db, org.Xl.eg.db, org.Cf.eg.db, knitr, rmarkdown, BiocStyle, testthat (>= 2.1.0)
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-graphite >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-graphite >=1.48.0,<1.49.0'
     - 'bioconductor-metaboliteidmapping >=1.0.0,<1.1.0'
     - r-base
     - r-dplyr
@@ -32,9 +33,9 @@ requirements:
     - r-rappdirs
     - r-rlang
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-graphite >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-graphite >=1.48.0,<1.49.0'
     - 'bioconductor-metaboliteidmapping >=1.0.0,<1.1.0'
     - r-base
     - r-dplyr
diff --git a/recipes/bioconductor-multihiccompare/meta.yaml b/recipes/bioconductor-multihiccompare/meta.yaml
index d6e500783897c..d25d76d5d4fc4 100644
--- a/recipes/bioconductor-multihiccompare/meta.yaml
+++ b/recipes/bioconductor-multihiccompare/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.1" %}
+{% set version = "1.20.0" %}
 {% set name = "multiHiCcompare" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d18f5b456ea8b27f8f3646821c85e204
+  md5: 04512b7be1f12fa8bfb32a13dbbb408f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-multihiccompare", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
     - 'bioconductor-genomeinfodbdata >=1.2.0,<1.3.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hiccompare >=1.22.0,<1.23.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hiccompare >=1.24.0,<1.25.0'
     - r-aggregation
     - r-base
     - r-data.table
@@ -35,12 +36,12 @@ requirements:
     - r-pheatmap
     - r-qqman
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
     - 'bioconductor-genomeinfodbdata >=1.2.0,<1.3.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hiccompare >=1.22.0,<1.23.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hiccompare >=1.24.0,<1.25.0'
     - r-aggregation
     - r-base
     - r-data.table
diff --git a/recipes/bioconductor-multimed/meta.yaml b/recipes/bioconductor-multimed/meta.yaml
index e566afa49af3f..0efc3b4e5acb4 100644
--- a/recipes/bioconductor-multimed/meta.yaml
+++ b/recipes/bioconductor-multimed/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.22.0" %}
+{% set version = "2.24.0" %}
 {% set name = "MultiMed" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 25b04f108f1617d3db68d9aacb8d7451
+  md5: 019bc5d7be15d1688b3b5df7b87246f7
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-multimed", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics
 requirements:
diff --git a/recipes/bioconductor-multimir/meta.yaml b/recipes/bioconductor-multimir/meta.yaml
index e34af927faac8..f62e261c71752 100644
--- a/recipes/bioconductor-multimir/meta.yaml
+++ b/recipes/bioconductor-multimir/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "multiMiR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9f6fbcf9e864eee972e452fe334fedb1
+  md5: 7102f312557b010d184bac5dea6e5009
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-multimir", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, edgeR, knitr, rmarkdown, testthat (>= 1.0.2)
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-dplyr
     - 'r-purrr >=0.2.2'
@@ -30,8 +31,8 @@ requirements:
     - 'r-tibble >=1.2'
     - r-xml
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-dplyr
     - 'r-purrr >=0.2.2'
diff --git a/recipes/bioconductor-multimodalexperiment/meta.yaml b/recipes/bioconductor-multimodalexperiment/meta.yaml
index b71a72ef509ec..4e86eba270849 100644
--- a/recipes/bioconductor-multimodalexperiment/meta.yaml
+++ b/recipes/bioconductor-multimodalexperiment/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "MultimodalExperiment" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3edef95bdd0fd57c9c2e7b077aeac135
+  md5: 376186ba5972df1b6d4be9dc69253a61
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-multimodalexperiment", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-multirnaflow/build.sh b/recipes/bioconductor-multirnaflow/build.sh
new file mode 100644
index 0000000000000..497f7b5bdb678
--- /dev/null
+++ b/recipes/bioconductor-multirnaflow/build.sh
@@ -0,0 +1,12 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+export LD_LIBRARY_PATH=${BUILD_PREFIX}/x86_64-conda-linux-gnu/sysroot/usr/lib64:${BUILD_PREFIX}/lib
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-multirnaflow/build_failure.linux-64.yaml b/recipes/bioconductor-multirnaflow/build_failure.linux-64.yaml
new file mode 100644
index 0000000000000..8506b569378e7
--- /dev/null
+++ b/recipes/bioconductor-multirnaflow/build_failure.linux-64.yaml
@@ -0,0 +1,6 @@
+recipe_sha: bb62d3b200f33f1ffccfa82f8214efabe8d38de5aa2a4135bccc1e17878148d7  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+reason: |-
+  package r-plot3drgl-1.0.4-r43h6115d3f_0 is excluded by strict repo priority
+category: |-
+  dependency issue
diff --git a/recipes/bioconductor-multirnaflow/meta.yaml b/recipes/bioconductor-multirnaflow/meta.yaml
new file mode 100644
index 0000000000000..46b7f0655ed98
--- /dev/null
+++ b/recipes/bioconductor-multirnaflow/meta.yaml
@@ -0,0 +1,89 @@
+{% set version = "1.0.0" %}
+{% set name = "MultiRNAflow" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: cefc109896f4cb34b4ee6a09ae966f42
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-multirnaflow", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocGenerics (>= 0.40.0), BiocStyle, e1071 (>= 1.7.12), knitr, rmarkdown, testthat (>= 3.0.0)
+requirements:
+  host:
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-mfuzz >=2.62.0,<2.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - 'r-factoextra >=1.0.7'
+    - 'r-factominer >=2.6'
+    - 'r-ggalluvial >=0.12.3'
+    - 'r-ggplot2 >=3.4.0'
+    - 'r-ggrepel >=0.9.2'
+    - 'r-ggsci >=2.9'
+    - 'r-gprofiler2 >=0.2.1'
+    - 'r-plot3d >=1.4'
+    - 'r-plot3drgl >=1.0.3'
+    - 'r-plyr >=1.8.8'
+    - 'r-rcolorbrewer >=1.1.3'
+    - 'r-reshape2 >=1.4.4'
+    - 'r-rlang >=1.1.1'
+    - 'r-scales >=1.2.1'
+    - 'r-upsetr >=1.4.0'
+  run:
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-mfuzz >=2.62.0,<2.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - 'r-factoextra >=1.0.7'
+    - 'r-factominer >=2.6'
+    - 'r-ggalluvial >=0.12.3'
+    - 'r-ggplot2 >=3.4.0'
+    - 'r-ggrepel >=0.9.2'
+    - 'r-ggsci >=2.9'
+    - 'r-gprofiler2 >=0.2.1'
+    - 'r-plot3d >=1.4'
+    - 'r-plot3drgl >=1.0.3'
+    - 'r-plyr >=1.8.8'
+    - 'r-rcolorbrewer >=1.1.3'
+    - 'r-reshape2 >=1.4.4'
+    - 'r-rlang >=1.1.1'
+    - 'r-scales >=1.2.1'
+    - 'r-upsetr >=1.4.0'
+  build:
+    - {{ cdt('mesa-libgl-devel') }}  # [linux]
+    - {{ cdt('mesa-dri-drivers') }}  # [linux]
+    - {{ cdt('libselinux') }}  # [linux]
+    - {{ cdt('libxdamage') }}  # [linux]
+    - {{ cdt('libxxf86vm') }}  # [linux]
+    - xorg-libxfixes  # [linux]
+test:
+  commands:
+    - 'LD_LIBRARY_PATH="${BUILD_PREFIX}/x86_64-conda-linux-gnu/sysroot/usr/lib64:${BUILD_PREFIX}/lib" $R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'GPL-3 | file LICENSE'
+  summary: 'An R package for analysing RNA-seq raw counts with several biological conditions and different time points'
+  description: 'Our R package MultiRNAflow provides an easy to use unified framework allowing to automatically make both unsupervised and supervised (DE) analysis for datasets with an arbitrary number of biological conditions and time points.  In particular, our code makes a deep downstream analysis of DE information, e.g. identifying temporal patterns across biological conditions and DE genes which are specific to a biological condition for each time.'
+  license_file: LICENSE
+extra:
+  container:
+    extended-base: true
+
diff --git a/recipes/bioconductor-multiscan/meta.yaml b/recipes/bioconductor-multiscan/meta.yaml
index 9354f244130e1..703917f5a7eb5 100644
--- a/recipes/bioconductor-multiscan/meta.yaml
+++ b/recipes/bioconductor-multiscan/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.60.0" %}
+{% set version = "1.62.0" %}
 {% set name = "multiscan" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d181a09f635a8d5f7cca61849e4ac8a2
+  md5: 58243690ff05bdbd30da46ea01e409a3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-multiscan", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-multiwgcna/build.sh b/recipes/bioconductor-multiwgcna/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-multiwgcna/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-multiwgcna/meta.yaml b/recipes/bioconductor-multiwgcna/meta.yaml
new file mode 100644
index 0000000000000..b40ef3418752f
--- /dev/null
+++ b/recipes/bioconductor-multiwgcna/meta.yaml
@@ -0,0 +1,69 @@
+{% set version = "1.0.0" %}
+{% set name = "multiWGCNA" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: b8f70e9496cf73238aa3ba3c08cb81fa
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-multiwgcna", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, doParallel, ExperimentHub, knitr, markdown, rmarkdown, testthat (>= 3.0.0), vegan
+requirements:
+  host:
+    - 'bioconductor-dcanr >=1.18.0,<1.19.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-cowplot
+    - r-data.table
+    - r-dplyr
+    - r-flashclust
+    - r-ggalluvial
+    - r-ggplot2
+    - r-ggrepel
+    - r-igraph
+    - r-patchwork
+    - r-readr
+    - r-reshape2
+    - r-scales
+    - r-stringr
+    - r-wgcna
+  run:
+    - 'bioconductor-dcanr >=1.18.0,<1.19.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-cowplot
+    - r-data.table
+    - r-dplyr
+    - r-flashclust
+    - r-ggalluvial
+    - r-ggplot2
+    - r-ggrepel
+    - r-igraph
+    - r-patchwork
+    - r-readr
+    - r-reshape2
+    - r-scales
+    - r-stringr
+    - r-wgcna
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: multiWGCNA
+  description: 'An R package for deeping mining gene co-expression networks in multi-trait expression data. Provides functions for analyzing, comparing, and visualizing WGCNA networks across conditions. multiWGCNA was designed to handle the common case where there are multiple biologically meaningful sample traits, such as disease vs wildtype across development or anatomical region.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-multtest/meta.yaml b/recipes/bioconductor-multtest/meta.yaml
index 97a738c9090aa..9a08836c83130 100644
--- a/recipes/bioconductor-multtest/meta.yaml
+++ b/recipes/bioconductor-multtest/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.56.0" %}
+{% set version = "2.58.0" %}
 {% set name = "multtest" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 2c19179f77fab3d8d805e284334c8a2c
+  md5: 7d81a8460781f4a86f01a9df5fcf50d7
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-multtest", max_pin="x.x") }}'
 # Suggests: snow
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-mass
     - r-survival
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-mass
     - r-survival
@@ -41,11 +42,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: LGPL
+  license: LGPL-3-only
   summary: 'Resampling-based multiple hypothesis testing'
   description: 'Non-parametric bootstrap and permutation resampling-based multiple testing procedures (including empirical Bayes methods) for controlling the family-wise error rate (FWER), generalized family-wise error rate (gFWER), tail probability of the proportion of false positives (TPPFP), and false discovery rate (FDR).  Several choices of bootstrap-based null distribution are implemented (centered, centered and scaled, quantile-transformed). Single-step and step-wise methods are available. Tests based on a variety of t- and F-statistics (including t-statistics based on regression parameters from linear and survival models as well as those based on correlation parameters) are included.  When probing hypotheses with t-statistics, users may also select a potentially faster null distribution which is multivariate normal with mean zero and variance covariance matrix derived from the vector influence function.  Results are reported in terms of adjusted p-values, confidence regions and test statistic cutoffs. The procedures are directly applicable to identifying differentially expressed genes in DNA microarray experiments.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/LGPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:multtest
     - doi:10.1007/0-387-29362-0_15
diff --git a/recipes/bioconductor-mumosa/meta.yaml b/recipes/bioconductor-mumosa/meta.yaml
index 773d5fad68828..8030f8a98140c 100644
--- a/recipes/bioconductor-mumosa/meta.yaml
+++ b/recipes/bioconductor-mumosa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "mumosa" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,53 +11,54 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 029ee75ea5b608ec5c691437e20a9df8
+  md5: 634ea9c4fce9573e5da8297886d4b699
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mumosa", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, BiocStyle, rmarkdown, scater, bluster, DropletUtils, scRNAseq
 requirements:
   host:
-    - 'bioconductor-batchelor >=1.16.0,<1.17.0'
-    - 'bioconductor-beachmat >=2.16.0,<2.17.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-metapod >=1.8.0,<1.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scaledmatrix >=1.8.0,<1.9.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-batchelor >=1.18.0,<1.19.0'
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-metapod >=1.10.0,<1.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scaledmatrix >=1.10.0,<1.11.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-igraph
     - r-matrix
     - r-uwot
   run:
-    - 'bioconductor-batchelor >=1.16.0,<1.17.0'
-    - 'bioconductor-beachmat >=2.16.0,<2.17.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-metapod >=1.8.0,<1.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scaledmatrix >=1.8.0,<1.9.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-batchelor >=1.18.0,<1.19.0'
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-metapod >=1.10.0,<1.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scaledmatrix >=1.10.0,<1.11.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-igraph
     - r-matrix
diff --git a/recipes/bioconductor-mungesumstats/meta.yaml b/recipes/bioconductor-mungesumstats/meta.yaml
index 5b60a43283b23..b1efda96dcf54 100644
--- a/recipes/bioconductor-mungesumstats/meta.yaml
+++ b/recipes/bioconductor-mungesumstats/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.1" %}
 {% set name = "MungeSumstats" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 38021189f212fdcf82d1a314142ec7bf
+  md5: 9164f3e5c8e7612c387b35bff82dc4cc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mungesumstats", max_pin="x.x") }}'
   noarch: generic
 # Suggests: SNPlocs.Hsapiens.dbSNP144.GRCh37, SNPlocs.Hsapiens.dbSNP144.GRCh38, SNPlocs.Hsapiens.dbSNP155.GRCh37, SNPlocs.Hsapiens.dbSNP155.GRCh38, BSgenome.Hsapiens.1000genomes.hs37d5, BSgenome.Hsapiens.NCBI.GRCh38, BiocGenerics, S4Vectors, rmarkdown, markdown, knitr, testthat (>= 3.0.0), UpSetR, BiocStyle, covr, Rsamtools, MatrixGenerics, badger, BiocParallel, GenomicFiles
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -39,13 +40,13 @@ requirements:
     - r-rcurl
     - r-stringr
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-data.table
     - r-dplyr
diff --git a/recipes/bioconductor-mus.musculus/meta.yaml b/recipes/bioconductor-mus.musculus/meta.yaml
index 9797f1ad64b34..59c522bbcc842 100644
--- a/recipes/bioconductor-mus.musculus/meta.yaml
+++ b/recipes/bioconductor-mus.musculus/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.1" %}
 {% set name = "Mus.musculus" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,30 +13,31 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 1b8defe64c2dd308a88d1ac7a4ce04b9
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mus.musculus", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-organismdbi >=1.42.0,<1.43.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-organismdbi >=1.44.0,<1.45.0'
     - 'bioconductor-txdb.mmusculus.ucsc.mm10.knowngene >=3.10.0,<3.11.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-organismdbi >=1.42.0,<1.43.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-organismdbi >=1.44.0,<1.45.0'
     - 'bioconductor-txdb.mmusculus.ucsc.mm10.knowngene >=3.10.0,<3.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-muscat/meta.yaml b/recipes/bioconductor-muscat/meta.yaml
index 08c28a46c8fc8..9dbac95cfe90b 100644
--- a/recipes/bioconductor-muscat/meta.yaml
+++ b/recipes/bioconductor-muscat/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "muscat" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c076dd82606240da8ce32441aba3a2fa
+  md5: ee69286717f8d129ce59fb554c1c0994
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-muscat", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, countsimQC, cowplot, ExperimentHub, iCOBRA, knitr, phylogram, RColorBrewer, reshape2, rmarkdown, statmod, testthat, UpSetR
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variancepartition >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variancepartition >=1.32.0,<1.33.0'
     - r-base
     - r-blme
     - r-data.table
@@ -48,17 +49,17 @@ requirements:
     - r-sctransform
     - r-viridis
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variancepartition >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variancepartition >=1.32.0,<1.33.0'
     - r-base
     - r-blme
     - r-data.table
diff --git a/recipes/bioconductor-muscdata/meta.yaml b/recipes/bioconductor-muscdata/meta.yaml
index f552a704d78c1..9db11d8026d1c 100644
--- a/recipes/bioconductor-muscdata/meta.yaml
+++ b/recipes/bioconductor-muscdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "muscData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d39accb42da56f5ca951a6f735f1586a
+  md5: f34c376f88f97c98d4aac5490b45bc24
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-muscdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, dplyr, DropletUtils, knitr, GEOquery, Matrix, matrixStats, methods, muscat, rmarkdown, R.utils, readxl, scater, scds, Seurat
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-muscdata/post-link.sh b/recipes/bioconductor-muscdata/post-link.sh
index 1a1accd88b16f..87addac2bf682 100644
--- a/recipes/bioconductor-muscdata/post-link.sh
+++ b/recipes/bioconductor-muscdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "muscdata-1.14.0"
+installBiocDataPackage.sh "muscdata-1.16.0"
diff --git a/recipes/bioconductor-muscle/meta.yaml b/recipes/bioconductor-muscle/meta.yaml
index 3f98fbc555ae4..c75199b874840 100644
--- a/recipes/bioconductor-muscle/meta.yaml
+++ b/recipes/bioconductor-muscle/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.42.0" %}
+{% set version = "3.44.0" %}
 {% set name = "muscle" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 5f8ece986a6adf5824aa35a420e351f9
+  md5: 159745260e624c7aeb3d2e0deeef99ab
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-muscle", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-musicatk/build_failure.linux-64.yaml b/recipes/bioconductor-musicatk/build_failure.linux-64.yaml
new file mode 100644
index 0000000000000..424fa8f85cd80
--- /dev/null
+++ b/recipes/bioconductor-musicatk/build_failure.linux-64.yaml
@@ -0,0 +1,101 @@
+recipe_sha: add20fc7cb5cb40c6bb4cc7b7f4ec8df2354e950eedc2efb6d70c37d5fb83448  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+reason: |-
+  ERRO Task processing failed: API error (500): {"message":"write /usr/local/lib/libgoogle_cloud_cpp_dialogflow_cx.so.2.12.0: no space left on device"}
+category: |-
+  compiler error
+log: |-
+  .07:05:52 BIOCONDA INFO (ERR) [Dec 15 07:05:52] SERR [Dec 15 07:05:52] ERRO Task processing failed: API error (500): {"message":"write /usr/local/lib/libgoogle_cloud_cpp_dialogflow_cx.so.2.12.0: no space left on device"}
+  07:05:52 BIOCONDA INFO (ERR) [Dec 15 07:05:52] SERR
+  07:05:52 BIOCONDA INFO (ERR) [Dec 15 07:05:52] ERRO Task processing failed: Unexpected exit code [1] of container [c84c2e941721 step-698cd8abd9], container preserved
+  .07:06:42 BIOCONDA INFO (OUT) ........
+  07:06:42 BIOCONDA INFO (ERR) Traceback (most recent call last):
+  07:06:42 BIOCONDA INFO (ERR)   File "/opt/mambaforge/envs/bioconda/bin/mulled-build", line 10, in <module>
+  07:06:42 BIOCONDA INFO (ERR)     sys.exit(main())
+  07:06:42 BIOCONDA INFO (ERR)   File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/galaxy/tools/deps/mulled/mulled_build.py", line 414, in main
+  07:06:42 BIOCONDA INFO (ERR)     sys.exit(mull_targets(targets, **args_to_mull_targets_kwds(args)))
+  07:06:42 BIOCONDA INFO (ERR)   File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/galaxy/tools/deps/mulled/mulled_build.py", line 243, in mull_targets
+  07:06:42 BIOCONDA INFO (ERR)     ret = involucro_context.exec_command(involucro_args)
+  07:06:42 BIOCONDA INFO (ERR)   File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/galaxy/tools/deps/mulled/mulled_build.py", line 287, in exec_command
+  07:06:42 BIOCONDA INFO (ERR)     shutil.rmtree('./build')
+  07:06:42 BIOCONDA INFO (ERR)   File "/opt/mambaforge/envs/bioconda/lib/python3.8/shutil.py", line 718, in rmtree
+  07:06:42 BIOCONDA INFO (ERR)     _rmtree_safe_fd(fd, path, onerror)
+  07:06:42 BIOCONDA INFO (ERR)   File "/opt/mambaforge/envs/bioconda/lib/python3.8/shutil.py", line 655, in _rmtree_safe_fd
+  07:06:42 BIOCONDA INFO (ERR)     _rmtree_safe_fd(dirfd, fullname, onerror)
+  07:06:42 BIOCONDA INFO (ERR)   File "/opt/mambaforge/envs/bioconda/lib/python3.8/shutil.py", line 655, in _rmtree_safe_fd
+  07:06:42 BIOCONDA INFO (ERR)     _rmtree_safe_fd(dirfd, fullname, onerror)
+  07:06:42 BIOCONDA INFO (ERR)   File "/opt/mambaforge/envs/bioconda/lib/python3.8/shutil.py", line 655, in _rmtree_safe_fd
+  07:06:42 BIOCONDA INFO (ERR)     _rmtree_safe_fd(dirfd, fullname, onerror)
+  07:06:42 BIOCONDA INFO (ERR)   File "/opt/mambaforge/envs/bioconda/lib/python3.8/shutil.py", line 675, in _rmtree_safe_fd
+  07:06:42 BIOCONDA INFO (ERR)     onerror(os.unlink, fullname, sys.exc_info())
+  07:06:42 BIOCONDA INFO (ERR)   File "/opt/mambaforge/envs/bioconda/lib/python3.8/shutil.py", line 673, in _rmtree_safe_fd
+  07:06:42 BIOCONDA INFO (ERR)     os.unlink(entry.name, dir_fd=topfd)
+  07:06:42 BIOCONDA INFO (ERR) PermissionError: [Errno 13] Permission denied: 'pcre2_set_callout.3'
+  07:06:42 BIOCONDA ERROR COMMAND FAILED (exited with 1): mulled-build build-and-test bioconductor-musicatk=1.12.0--r43hdfd78af_0 -n biocontainers --test bash -c '/usr/local/env-execute true && . /usr/local/env-activate.sh && Rscript -e "library('"'"'musicatk'"'"')"' --channels conda-forge,file:///opt/mambaforge/envs/bioconda/conda-bld,bioconda,defaults --involucro-path /opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/bioconda_utils/involucro
+
+  Traceback (most recent call last):
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/bioconda_utils/pkg_test.py", line 180, in test_package
+      p = utils.run(cmd, env=env, cwd=d, mask=False, live=live_logs)
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/bioconda_utils/utils.py", line 697, in run
+      raise sp.CalledProcessError(returncode, masked_cmds, output=output)
+  subprocess.CalledProcessError: Command '['mulled-build', 'build-and-test', 'bioconductor-musicatk=1.12.0--r43hdfd78af_0', '-n', 'biocontainers', '--test', 'bash -c \'/usr/local/env-execute true && . /usr/local/env-activate.sh && Rscript -e "library(\'"\'"\'musicatk\'"\'"\')"\'', '--channels', 'conda-forge,file:///opt/mambaforge/envs/bioconda/conda-bld,bioconda,defaults', '--involucro-path', '/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/bioconda_utils/involucro']' returned non-zero exit status 1.
+
+  During handling of the above exception, another exception occurred:
+
+  Traceback (most recent call last):
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/shutil.py", line 673, in _rmtree_safe_fd
+      os.unlink(entry.name, dir_fd=topfd)
+  PermissionError: [Errno 13] Permission denied: 'pcre2_set_callout.3'
+
+  During handling of the above exception, another exception occurred:
+
+  Traceback (most recent call last):
+    File "/opt/mambaforge/envs/bioconda/bin/bioconda-utils", line 8, in <module>
+      sys.exit(main())
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/bioconda_utils/cli.py", line 1114, in main
+      argh.dispatch_commands([
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/argh/dispatching.py", line 328, in dispatch_commands
+      dispatch(parser, *args, **kwargs)
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/argh/dispatching.py", line 174, in dispatch
+      for line in lines:
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/argh/dispatching.py", line 277, in _execute_command
+      for line in result:
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/argh/dispatching.py", line 260, in _call
+      result = function(*positional, **keywords)
+    File "<boltons.funcutils.FunctionBuilder-5>", line 2, in build
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/bioconda_utils/cli.py", line 137, in wrapper
+      func(*args, **kwargs)
+    File "<boltons.funcutils.FunctionBuilder-4>", line 2, in build
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/bioconda_utils/cli.py", line 66, in wrapper
+      func(*args, **kwargs)
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/bioconda_utils/cli.py", line 492, in build
+      success = build_recipes(recipe_folder, config, recipes,
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/bioconda_utils/build.py", line 421, in build_recipes
+      res = build(recipe=recipe,
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/bioconda_utils/build.py", line 185, in build
+      pkg_test.test_package(pkg_path, base_image=base_image,
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/bioconda_utils/pkg_test.py", line 180, in test_package
+      p = utils.run(cmd, env=env, cwd=d, mask=False, live=live_logs)
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/tempfile.py", line 827, in __exit__
+      self.cleanup()
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/tempfile.py", line 831, in cleanup
+      self._rmtree(self.name)
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/tempfile.py", line 813, in _rmtree
+      _shutil.rmtree(name, onerror=onerror)
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/shutil.py", line 718, in rmtree
+      _rmtree_safe_fd(fd, path, onerror)
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/shutil.py", line 655, in _rmtree_safe_fd
+      _rmtree_safe_fd(dirfd, fullname, onerror)
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/shutil.py", line 655, in _rmtree_safe_fd
+      _rmtree_safe_fd(dirfd, fullname, onerror)
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/shutil.py", line 655, in _rmtree_safe_fd
+      _rmtree_safe_fd(dirfd, fullname, onerror)
+    [Previous line repeated 1 more time]
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/shutil.py", line 675, in _rmtree_safe_fd
+      onerror(os.unlink, fullname, sys.exc_info())
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/tempfile.py", line 798, in onerror
+      resetperms(_os.path.dirname(path))
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/tempfile.py", line 794, in resetperms
+      _os.chmod(path, 0o700)
+  PermissionError: [Errno 1] Operation not permitted: '/tmp/tmpeaviicao/build/dist/man/man3'
+  Error: Process completed with exit code 1.    
diff --git a/recipes/bioconductor-musicatk/meta.yaml b/recipes/bioconductor-musicatk/meta.yaml
index 384cee72811a5..3bbcc539d032f 100644
--- a/recipes/bioconductor-musicatk/meta.yaml
+++ b/recipes/bioconductor-musicatk/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "musicatk" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 23833374b24d85aa3fb37d69c818ad9d
+  md5: 50869915aff9dd79823e05b4ae163bc6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-musicatk", max_pin="x.x") }}'
   noarch: generic
 # Suggests: TCGAbiolinks, shinyBS, shinyalert, shinybusy, shinydashboard, shinyjs, shinyjqui, sortable, testthat, BiocStyle, knitr, rmarkdown, survival, XVector, qpdf, covr, shinyWidgets, cowplot, withr
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg38 >=1.4.0,<1.5.0'
     - 'bioconductor-bsgenome.mmusculus.ucsc.mm10 >=1.4.0,<1.5.0'
     - 'bioconductor-bsgenome.mmusculus.ucsc.mm9 >=1.4.0,<1.5.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-decomptumor2sig >=2.16.0,<2.17.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-maftools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-decomptumor2sig >=2.18.0,<2.19.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-maftools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.17.0,<3.18.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.18.0,<3.19.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-cluster
     - r-data.table
@@ -67,24 +68,24 @@ requirements:
     - r-topicmodels
     - r-uwot
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg38 >=1.4.0,<1.5.0'
     - 'bioconductor-bsgenome.mmusculus.ucsc.mm10 >=1.4.0,<1.5.0'
     - 'bioconductor-bsgenome.mmusculus.ucsc.mm9 >=1.4.0,<1.5.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-decomptumor2sig >=2.16.0,<2.17.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-maftools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-decomptumor2sig >=2.18.0,<2.19.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-maftools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.17.0,<3.18.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.18.0,<3.19.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-cluster
     - r-data.table
diff --git a/recipes/bioconductor-mutationalpatterns/meta.yaml b/recipes/bioconductor-mutationalpatterns/meta.yaml
index d3cfa91018d80..78b54176ec5de 100644
--- a/recipes/bioconductor-mutationalpatterns/meta.yaml
+++ b/recipes/bioconductor-mutationalpatterns/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.10.0" %}
+{% set version = "3.12.0" %}
 {% set name = "MutationalPatterns" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1e8261046a65aa290c5026e6ab0bfef9
+  md5: 6c800e4f89957108a1b4ab1d3a2b4cb6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mutationalpatterns", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Hsapiens.UCSC.hg19 (>= 1.4.0), BiocStyle (>= 2.0.3), TxDb.Hsapiens.UCSC.hg19.knownGene (>= 3.2.2), biomaRt (>= 2.28.0), gridExtra (>= 2.2.1), rtracklayer (>= 1.32.2), ccfindR (>= 1.6.0), GenomicFeatures, AnnotationDbi, testthat, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - 'r-cowplot >=0.9.2'
     - 'r-dplyr >=0.8.3'
@@ -44,14 +45,14 @@ requirements:
     - 'r-tibble >=2.1.3'
     - 'r-tidyr >=1.0.0'
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - 'r-cowplot >=0.9.2'
     - 'r-dplyr >=0.8.3'
diff --git a/recipes/bioconductor-mvcclass/meta.yaml b/recipes/bioconductor-mvcclass/meta.yaml
index 7ea5d2273d088..dc8edbb507c49 100644
--- a/recipes/bioconductor-mvcclass/meta.yaml
+++ b/recipes/bioconductor-mvcclass/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.74.0" %}
+{% set version = "1.76.0" %}
 {% set name = "MVCClass" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 624849899bde24809fa8df9780da0eb3
+  md5: 2ef3331b86ae7981a2ab3323386caf61
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mvcclass", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-mvoutdata/meta.yaml b/recipes/bioconductor-mvoutdata/meta.yaml
index 9f192cbe3b987..a0a5517d19240 100644
--- a/recipes/bioconductor-mvoutdata/meta.yaml
+++ b/recipes/bioconductor-mvoutdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "mvoutData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c4a2c65e797ec8403b7657afc81c2714
+  md5: abca7ca8ae7729ed8f146d0083aa9757
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mvoutdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mvoutdata/post-link.sh b/recipes/bioconductor-mvoutdata/post-link.sh
index c8bac146b0676..c258bd7e17567 100644
--- a/recipes/bioconductor-mvoutdata/post-link.sh
+++ b/recipes/bioconductor-mvoutdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "mvoutdata-1.36.0"
+installBiocDataPackage.sh "mvoutdata-1.38.0"
diff --git a/recipes/bioconductor-mwastools/meta.yaml b/recipes/bioconductor-mwastools/meta.yaml
index f512e56ccd79b..75f809f1bc281 100644
--- a/recipes/bioconductor-mwastools/meta.yaml
+++ b/recipes/bioconductor-mwastools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "MWASTools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b4a49a058ef4c25ba8756e32251ea6c9
+  md5: 4af3f3512a794c7944a27bfad640aa81
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mwastools", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, knitr, BiocStyle, rmarkdown
 requirements:
   host:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-kegggraph >=1.60.0,<1.61.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-kegggraph >=1.62.0,<1.63.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-boot
     - r-car
@@ -36,11 +37,11 @@ requirements:
     - r-ppcor
     - r-rcurl
   run:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-kegggraph >=1.60.0,<1.61.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-kegggraph >=1.62.0,<1.63.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-boot
     - r-car
diff --git a/recipes/bioconductor-mwgcod.db/meta.yaml b/recipes/bioconductor-mwgcod.db/meta.yaml
index 4f6b7f79bc085..e5a5c3839be7b 100644
--- a/recipes/bioconductor-mwgcod.db/meta.yaml
+++ b/recipes/bioconductor-mwgcod.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.4.0" %}
 {% set name = "mwgcod.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 3d6e2af6b05d6e07a212c043dc9d37c4
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mwgcod.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-mygene/meta.yaml b/recipes/bioconductor-mygene/meta.yaml
index 80b5f1e3c5d32..a48b4d7634c6f 100644
--- a/recipes/bioconductor-mygene/meta.yaml
+++ b/recipes/bioconductor-mygene/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "mygene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 13074d33fbfe6415400dab10c372bbac
+  md5: 01ebbd87d5d6b57ca6987eef9c3ae95a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mygene", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle
 requirements:
   host:
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-hmisc
     - 'r-httr >=0.3'
@@ -30,8 +31,8 @@ requirements:
     - r-plyr
     - r-sqldf
   run:
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-hmisc
     - 'r-httr >=0.3'
diff --git a/recipes/bioconductor-myvariant/meta.yaml b/recipes/bioconductor-myvariant/meta.yaml
index 2046e5b7d9672..bfcdcd49ceb7b 100644
--- a/recipes/bioconductor-myvariant/meta.yaml
+++ b/recipes/bioconductor-myvariant/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "myvariant" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: b56b2c182e41681970973e976bb52f7c
+  md5: 110e5245914806eb225bad404727124f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-myvariant", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle
 requirements:
   host:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-hmisc
     - r-httr
@@ -31,9 +32,9 @@ requirements:
     - r-magrittr
     - r-plyr
   run:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-hmisc
     - r-httr
diff --git a/recipes/bioconductor-mzid/meta.yaml b/recipes/bioconductor-mzid/meta.yaml
index 27c12cc6d0b75..52a34ad7b0de9 100644
--- a/recipes/bioconductor-mzid/meta.yaml
+++ b/recipes/bioconductor-mzid/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "mzID" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9e92e3ea5ca514f37139a2f9da2ff733
+  md5: 8ede9a6260d4b9aa70edd19838e3c80c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mzid", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat
 requirements:
   host:
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
     - r-base
     - r-doparallel
     - r-foreach
@@ -29,7 +30,7 @@ requirements:
     - r-plyr
     - r-xml
   run:
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
     - r-base
     - r-doparallel
     - r-foreach
diff --git a/recipes/bioconductor-mzr/meta.yaml b/recipes/bioconductor-mzr/meta.yaml
index 74feda4882e63..9a63146869b81 100644
--- a/recipes/bioconductor-mzr/meta.yaml
+++ b/recipes/bioconductor-mzr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.34.1" %}
+{% set version = "2.36.0" %}
 {% set name = "mzR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ddbdeebce8ad003ef98a64e98b046dec
+  md5: aae8b88db5fd49675b653b861702800e
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-mzr", max_pin="x.x") }}'
 # Suggests: msdata (>= 0.15.1), RUnit, mzID, BiocStyle (>= 2.5.19), knitr, XML, rmarkdown
 # SystemRequirements: C++11, GNU make
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
     - r-base
     - r-ncdf4
     - 'r-rcpp >=0.10.1'
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
     - r-base
     - r-ncdf4
     - 'r-rcpp >=0.10.1'
@@ -52,6 +53,8 @@ about:
   summary: 'parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass spectrometry data)'
   description: 'mzR provides a unified API to the common file formats and parsers available for mass spectrometry data. It comes with a subset of the proteowizard library for mzXML, mzML and mzIdentML. The netCDF reading code has previously been used in XCMS.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:mzr
   parent_recipe:
diff --git a/recipes/bioconductor-nadfinder/meta.yaml b/recipes/bioconductor-nadfinder/meta.yaml
index f2457428ad06a..fef35a4d2ebc1 100644
--- a/recipes/bioconductor-nadfinder/meta.yaml
+++ b/recipes/bioconductor-nadfinder/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "NADfinder" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,50 +11,51 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5ed74eabcb223af4a11ffa048cd23d7e
+  md5: d60f5020a7e46305fafc626c59a11851
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nadfinder", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocStyle, knitr, BSgenome.Mmusculus.UCSC.mm10, testthat, BiocManager, rmarkdown
 requirements:
   host:
-    - 'bioconductor-atacseqqc >=1.24.0,<1.25.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-csaw >=1.34.0,<1.35.0'
-    - 'bioconductor-empiricalbrownsmethod >=1.28.0,<1.29.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-trackviewer >=1.36.0,<1.37.0'
+    - 'bioconductor-atacseqqc >=1.26.0,<1.27.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-csaw >=1.36.0,<1.37.0'
+    - 'bioconductor-empiricalbrownsmethod >=1.30.0,<1.31.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-trackviewer >=1.38.0,<1.39.0'
     - r-base
     - r-baseline
     - r-corrplot
     - r-metap
     - r-signal
   run:
-    - 'bioconductor-atacseqqc >=1.24.0,<1.25.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-csaw >=1.34.0,<1.35.0'
-    - 'bioconductor-empiricalbrownsmethod >=1.28.0,<1.29.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-trackviewer >=1.36.0,<1.37.0'
+    - 'bioconductor-atacseqqc >=1.26.0,<1.27.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-csaw >=1.36.0,<1.37.0'
+    - 'bioconductor-empiricalbrownsmethod >=1.30.0,<1.31.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-trackviewer >=1.38.0,<1.39.0'
     - r-base
     - r-baseline
     - r-corrplot
diff --git a/recipes/bioconductor-nanomethviz/meta.yaml b/recipes/bioconductor-nanomethviz/meta.yaml
index abe27f2d8f65c..94a584c8be8d5 100644
--- a/recipes/bioconductor-nanomethviz/meta.yaml
+++ b/recipes/bioconductor-nanomethviz/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.6.0" %}
+{% set version = "2.8.1" %}
 {% set name = "NanoMethViz" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 708505992439c9c7f2631c9c5f2f6a89
+  md5: 5ddef080c0bf460814f94f28ee5f98d5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
-# Suggests: DSS, Mus.musculus (>= 1.3.1), Homo.sapiens (>= 1.3.1), org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Hsapiens.UCSC.hg38.knownGene, org.Mm.eg.db, TxDb.Mmusculus.UCSC.mm10.knownGene, knitr, rmarkdown, rtracklayer, testthat (>= 3.0.0), covr
-# SystemRequirements: C++20
+  run_exports: '{{ pin_subpackage("bioconductor-nanomethviz", max_pin="x.x") }}'
+# Suggests: BiocStyle, DSS, Mus.musculus (>= 1.3.1), Homo.sapiens (>= 1.3.1), org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Hsapiens.UCSC.hg38.knownGene, org.Mm.eg.db, TxDb.Mmusculus.UCSC.mm10.knownGene, TxDb.Mmusculus.UCSC.mm39.refGene, knitr, rmarkdown, rtracklayer, testthat (>= 3.0.0), covr
+# SystemRequirements: C++17
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-bsseq >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsseq >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-assertthat
     - r-base
+    - r-cli
     - 'r-cpp11 >=0.2.5'
     - r-data.table
+    - r-dbscan
     - r-dplyr
     - r-e1071
     - r-forcats
@@ -47,7 +52,6 @@ requirements:
     - r-rcpp
     - r-readr
     - r-rlang
-    - r-rsqlite
     - 'r-scales >=1.2.0'
     - r-scico
     - r-stringr
@@ -57,19 +61,23 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-bsseq >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsseq >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-assertthat
     - r-base
+    - r-cli
     - 'r-cpp11 >=0.2.5'
     - r-data.table
+    - r-dbscan
     - r-dplyr
     - r-e1071
     - r-forcats
@@ -83,7 +91,6 @@ requirements:
     - r-rcpp
     - r-readr
     - r-rlang
-    - r-rsqlite
     - 'r-scales >=1.2.0'
     - r-scico
     - r-stringr
diff --git a/recipes/bioconductor-nanoporernaseq/meta.yaml b/recipes/bioconductor-nanoporernaseq/meta.yaml
index f5e9e177e2c44..262cf057ce809 100644
--- a/recipes/bioconductor-nanoporernaseq/meta.yaml
+++ b/recipes/bioconductor-nanoporernaseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "NanoporeRNASeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4efdad7f3e17485998405b6d05612ac2
+  md5: eca12ebcd403efd53e1b38d5f03f2027
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nanoporernaseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, bambu, ggbio, BSgenome.Hsapiens.NCBI.GRCh38, circlize, ComplexHeatmap, apeglm, rlang, rmarkdown, GenomicAlignments, Rsamtools
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-nanoporernaseq/post-link.sh b/recipes/bioconductor-nanoporernaseq/post-link.sh
index 3a381b9a76dd7..cb6624b6a8d06 100644
--- a/recipes/bioconductor-nanoporernaseq/post-link.sh
+++ b/recipes/bioconductor-nanoporernaseq/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "nanoporernaseq-1.10.0"
+installBiocDataPackage.sh "nanoporernaseq-1.12.0"
diff --git a/recipes/bioconductor-nanostringdiff/meta.yaml b/recipes/bioconductor-nanostringdiff/meta.yaml
index e3e58c117163c..ed2b6dc1d1f75 100644
--- a/recipes/bioconductor-nanostringdiff/meta.yaml
+++ b/recipes/bioconductor-nanostringdiff/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "NanoStringDiff" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9b7337dfd2beccd2c508cd36f6de796d
+  md5: 3614c5bcf8aeea002875aa005d746092
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nanostringdiff", max_pin="x.x") }}'
 # Suggests: testthat, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-matrixstats
     - r-rcpp
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-matrixstats
     - r-rcpp
diff --git a/recipes/bioconductor-nanostringnctools/meta.yaml b/recipes/bioconductor-nanostringnctools/meta.yaml
index fee2b2ae279e2..8e2ae08e86524 100644
--- a/recipes/bioconductor-nanostringnctools/meta.yaml
+++ b/recipes/bioconductor-nanostringnctools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "NanoStringNCTools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 48e7ea143797954a6fdf23341abd5515
+  md5: 97985a577c04cc2d7c19d00f2bd8e1d1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nanostringnctools", max_pin="x.x") }}'
   noarch: generic
 # Suggests: biovizBase, ggbio, RUnit, rmarkdown, knitr, qpdf
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggbeeswarm
     - r-ggiraph
@@ -34,11 +35,11 @@ requirements:
     - r-pheatmap
     - r-rcolorbrewer
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggbeeswarm
     - r-ggiraph
diff --git a/recipes/bioconductor-nanotator/meta.yaml b/recipes/bioconductor-nanotator/meta.yaml
index 2d617b65005dc..682082bcff49b 100644
--- a/recipes/bioconductor-nanotator/meta.yaml
+++ b/recipes/bioconductor-nanotator/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "nanotatoR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 86bdebac66638200c60dbfe387334f08
+  md5: e808c68591d98effbfdba4dbac07ac91
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nanotator", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, yaml
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - r-curl
     - r-dplyr
@@ -40,9 +41,9 @@ requirements:
     - r-xml
     - r-xml2r
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - r-curl
     - r-dplyr
diff --git a/recipes/bioconductor-nanotube/meta.yaml b/recipes/bioconductor-nanotube/meta.yaml
index d93662dcdc24a..9a1e127227387 100644
--- a/recipes/bioconductor-nanotube/meta.yaml
+++ b/recipes/bioconductor-nanotube/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "NanoTube" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3f94ce1248e7929f4f278f94de9858fe
+  md5: 524cdc55bcaf670d538be8f6c2f06c11
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nanotube", max_pin="x.x") }}'
   noarch: generic
 # Suggests: grid, kableExtra, knitr, NanoStringDiff, pheatmap, plotly, rlang, rmarkdown, ruv, RUVSeq, shiny, testthat, xlsx
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-ggplot2
     - r-reshape
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-ggplot2
     - r-reshape
diff --git a/recipes/bioconductor-nanotubes/meta.yaml b/recipes/bioconductor-nanotubes/meta.yaml
index de6c307ed2549..3af73d0c984a9 100644
--- a/recipes/bioconductor-nanotubes/meta.yaml
+++ b/recipes/bioconductor-nanotubes/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "nanotubes" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 7d068f3a955216378fe66463811e4adf
+  md5: ff283cb49c319a357c22e17d2df22715
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nanotubes", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, GenomicRanges, rtracklayer, CAGEfightR
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-nanotubes/post-link.sh b/recipes/bioconductor-nanotubes/post-link.sh
index 0ad8894e1b628..b2fb9f7b15f26 100644
--- a/recipes/bioconductor-nanotubes/post-link.sh
+++ b/recipes/bioconductor-nanotubes/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "nanotubes-1.16.0"
+installBiocDataPackage.sh "nanotubes-1.18.0"
diff --git a/recipes/bioconductor-nbamseq/meta.yaml b/recipes/bioconductor-nbamseq/meta.yaml
index 89f006c1f15bb..4476179efd3cd 100644
--- a/recipes/bioconductor-nbamseq/meta.yaml
+++ b/recipes/bioconductor-nbamseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "NBAMSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 44bb5d716c113a4ffe6ab9e069405889
+  md5: 45181f95a38937784da7cbad4d416811
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nbamseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, ggplot2
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-mgcv >=1.8-24'
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-mgcv >=1.8-24'
 test:
diff --git a/recipes/bioconductor-ncdfflow/meta.yaml b/recipes/bioconductor-ncdfflow/meta.yaml
index bb9e9cdff349c..976e9392a7934 100644
--- a/recipes/bioconductor-ncdfflow/meta.yaml
+++ b/recipes/bioconductor-ncdfflow/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.46.0" %}
+{% set version = "2.48.0" %}
 {% set name = "ncdfFlow" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 50a5d7442f7508b50359a6570ef591c2
+  md5: 974c454443e3ed6c243aed7395f28911
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ncdfflow", max_pin="x.x") }}'
 # Suggests: testthat,parallel,flowStats,knitr
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-bh
     - r-cpp11
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-bh
     - r-cpp11
diff --git a/recipes/bioconductor-ncgtw/meta.yaml b/recipes/bioconductor-ncgtw/meta.yaml
index 6862f27428261..c74112360f5e6 100644
--- a/recipes/bioconductor-ncgtw/meta.yaml
+++ b/recipes/bioconductor-ncgtw/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "ncGTW" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0da7500204724de4cd4b4946a37eaec3
+  md5: ea33321b03c3751afd04234fd7fbcda3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ncgtw", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, testthat, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-base
     - r-rcpp
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-base
     - r-rcpp
   build:
diff --git a/recipes/bioconductor-ncigraph/meta.yaml b/recipes/bioconductor-ncigraph/meta.yaml
index e250dcc8bb85f..090a8f728c23d 100644
--- a/recipes/bioconductor-ncigraph/meta.yaml
+++ b/recipes/bioconductor-ncigraph/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "NCIgraph" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d49e4ab0775611fdf993b7a0f677bf3e
+  md5: ed568ded26dce9e64d5f38606e65c13d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ncigraph", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Rgraphviz
 requirements:
   host:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-kegggraph >=1.60.0,<1.61.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-rcy3 >=2.20.0,<2.21.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-kegggraph >=1.62.0,<1.63.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-rcy3 >=2.22.0,<2.23.0'
     - r-base
-    - r-r.methodss3
+    - r-r.oo
   run:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-kegggraph >=1.60.0,<1.61.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-rcy3 >=2.20.0,<2.21.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-kegggraph >=1.62.0,<1.63.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-rcy3 >=2.22.0,<2.23.0'
     - r-base
-    - r-r.methodss3
+    - r-r.oo
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ncigraphdata/meta.yaml b/recipes/bioconductor-ncigraphdata/meta.yaml
index 2bf79a205576e..91195f389e417 100644
--- a/recipes/bioconductor-ncigraphdata/meta.yaml
+++ b/recipes/bioconductor-ncigraphdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "NCIgraphData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: beb23450c51a8f3bcac07438a25d6f9b
+  md5: f144169473d42fafb1966986dcf15628
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ncigraphdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Rgraphviz
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ncigraphdata/post-link.sh b/recipes/bioconductor-ncigraphdata/post-link.sh
index 3e382feb2fd73..2c15cc4502b3a 100644
--- a/recipes/bioconductor-ncigraphdata/post-link.sh
+++ b/recipes/bioconductor-ncigraphdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "ncigraphdata-1.36.0"
+installBiocDataPackage.sh "ncigraphdata-1.38.0"
diff --git a/recipes/bioconductor-ncrnatools/meta.yaml b/recipes/bioconductor-ncrnatools/meta.yaml
index 05b5fdb686ad4..0be79f82b0b3b 100644
--- a/recipes/bioconductor-ncrnatools/meta.yaml
+++ b/recipes/bioconductor-ncrnatools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "ncRNAtools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 29e195e74ec13242c94f3ed0b2b0c6d2
+  md5: 4e6f2f3809ca2cfe114ecc2c63f1d3dc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ncrnatools", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, rmarkdown, RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - r-httr
     - r-xml2
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - r-httr
diff --git a/recipes/bioconductor-ndexr/meta.yaml b/recipes/bioconductor-ndexr/meta.yaml
index 149ce9b792e32..e78c598266f08 100644
--- a/recipes/bioconductor-ndexr/meta.yaml
+++ b/recipes/bioconductor-ndexr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "ndexr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 4101572e631f965b7ae5bc1d51031ba7
+  md5: caa87487f3e0c062aa6b56b1dc6f70a0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ndexr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, testthat, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-rcx >=1.4.0,<1.5.0'
+    - 'bioconductor-rcx >=1.6.0,<1.7.0'
     - r-base
     - r-httr
     - r-jsonlite
     - r-plyr
     - r-tidyr
   run:
-    - 'bioconductor-rcx >=1.4.0,<1.5.0'
+    - 'bioconductor-rcx >=1.6.0,<1.7.0'
     - r-base
     - r-httr
     - r-jsonlite
diff --git a/recipes/bioconductor-nearbynding/meta.yaml b/recipes/bioconductor-nearbynding/meta.yaml
index e1e8b53d6a637..5344eaad1760f 100644
--- a/recipes/bioconductor-nearbynding/meta.yaml
+++ b/recipes/bioconductor-nearbynding/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "nearBynding" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c0e19b30364b8df75523fe8a8cf6e85e
+  md5: 2bcc4459fa78c6327ee2708f06da54db
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nearbynding", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 # SystemRequirements: bedtools (>= 2.28.0), Stereogene (>= v2.22), CapR (>= 1.1.1)
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-plyranges >=1.20.0,<1.21.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.17.0,<3.18.0'
+    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.18.0,<3.19.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -41,15 +42,15 @@ requirements:
     - r-rlang
     - r-transport
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-plyranges >=1.20.0,<1.21.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.17.0,<3.18.0'
+    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.18.0,<3.19.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-nebulosa/meta.yaml b/recipes/bioconductor-nebulosa/meta.yaml
index be8b72764b6ab..7ee5a8801e91d 100644
--- a/recipes/bioconductor-nebulosa/meta.yaml
+++ b/recipes/bioconductor-nebulosa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "Nebulosa" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8aa3fd5e95574c3b0023d243302470d4
+  md5: e71c21bbda87365578a49f21dd915fa4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nebulosa", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle, knitr, rmarkdown, covr, scater, scran, DropletUtils, igraph, BiocFileCache, SeuratObject
 requirements:
   host:
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-ks
@@ -30,8 +31,8 @@ requirements:
     - r-patchwork
     - r-seurat
   run:
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-ks
diff --git a/recipes/bioconductor-nempi/meta.yaml b/recipes/bioconductor-nempi/meta.yaml
index 1cef818a6c9dd..35ac5c2778196 100644
--- a/recipes/bioconductor-nempi/meta.yaml
+++ b/recipes/bioconductor-nempi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "nempi" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: a75421d6b4a639b46ef0ae5ef181abb2
+  md5: 1180e323b8f109079a74702ef7159cda
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nempi", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocGenerics, rmarkdown, RUnit, BiocStyle
 requirements:
   host:
-    - 'bioconductor-epinem >=1.24.0,<1.25.0'
-    - 'bioconductor-mnem >=1.16.0,<1.17.0'
+    - 'bioconductor-epinem >=1.26.0,<1.27.0'
+    - 'bioconductor-mnem >=1.18.0,<1.19.0'
     - r-base
     - r-e1071
     - r-matrixstats
@@ -30,8 +31,8 @@ requirements:
     - r-nnet
     - r-randomforest
   run:
-    - 'bioconductor-epinem >=1.24.0,<1.25.0'
-    - 'bioconductor-mnem >=1.16.0,<1.17.0'
+    - 'bioconductor-epinem >=1.26.0,<1.27.0'
+    - 'bioconductor-mnem >=1.18.0,<1.19.0'
     - r-base
     - r-e1071
     - r-matrixstats
diff --git a/recipes/bioconductor-nestlink/meta.yaml b/recipes/bioconductor-nestlink/meta.yaml
index 3dfa79d67adb0..7547790cc430c 100644
--- a/recipes/bioconductor-nestlink/meta.yaml
+++ b/recipes/bioconductor-nestlink/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "NestLink" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ae3c598105a6b4fc40e3ce4ad0bf1e99
+  md5: 11cd94f5bd8b38cf261ae3346a283e81
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nestlink", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle (>= 2.2), DT, ggplot2, knitr, rmarkdown, testthat, specL, lattice, scales
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - 'r-gplots >=3.0'
     - 'r-protviz >=0.4'
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - 'r-gplots >=3.0'
     - 'r-protviz >=0.4'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-nestlink/post-link.sh b/recipes/bioconductor-nestlink/post-link.sh
index 70a917bc106e7..e4c21fc4a1132 100644
--- a/recipes/bioconductor-nestlink/post-link.sh
+++ b/recipes/bioconductor-nestlink/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "nestlink-1.16.0"
+installBiocDataPackage.sh "nestlink-1.18.0"
diff --git a/recipes/bioconductor-netactivity/meta.yaml b/recipes/bioconductor-netactivity/meta.yaml
index 451a5f24248ea..78e371d72f461 100644
--- a/recipes/bioconductor-netactivity/meta.yaml
+++ b/recipes/bioconductor-netactivity/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "NetActivity" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c3937c60ef36d7b14327a8b1c5f803cf
+  md5: 3493b441d888adf6d3a089936bbeafd6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-netactivity", max_pin="x.x") }}'
   noarch: generic
 # Suggests: AnnotationDbi, BiocStyle, Fletcher2013a, knitr, org.Hs.eg.db, rmarkdown, testthat (>= 3.0.0), tidyverse
 requirements:
   host:
-    - 'bioconductor-airway >=1.20.0,<1.21.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-netactivitydata >=1.2.0,<1.3.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-airway >=1.22.0,<1.23.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-netactivitydata >=1.4.0,<1.5.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-airway >=1.20.0,<1.21.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-netactivitydata >=1.2.0,<1.3.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-airway >=1.22.0,<1.23.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-netactivitydata >=1.4.0,<1.5.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-netactivitydata/meta.yaml b/recipes/bioconductor-netactivitydata/meta.yaml
index 99d3fc99db88e..eb4cf6502a8c5 100644
--- a/recipes/bioconductor-netactivitydata/meta.yaml
+++ b/recipes/bioconductor-netactivitydata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "NetActivityData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 43f1651effd619c45926094b7f6df44b
+  md5: a3805046d14d13afc30a0f082952f200
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-netactivitydata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-netactivitydata/post-link.sh b/recipes/bioconductor-netactivitydata/post-link.sh
index 0092bdf08ff5e..945e66b43cd20 100644
--- a/recipes/bioconductor-netactivitydata/post-link.sh
+++ b/recipes/bioconductor-netactivitydata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "netactivitydata-1.2.0"
+installBiocDataPackage.sh "netactivitydata-1.4.0"
diff --git a/recipes/bioconductor-netboost/meta.yaml b/recipes/bioconductor-netboost/meta.yaml
index f7474534850b3..827401588e5f8 100644
--- a/recipes/bioconductor-netboost/meta.yaml
+++ b/recipes/bioconductor-netboost/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.8.0" %}
+{% set version = "2.10.0" %}
 {% set name = "netboost" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 290c4fcdcc62163c74e30ff61011cba2
+  md5: d21f645a3fe85c35ff9b9127bce1fbca
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
-# Suggests: knitr, markdown, rmarkdown
+  run_exports: '{{ pin_subpackage("bioconductor-netboost", max_pin="x.x") }}'
+# Suggests: knitr, rmarkdown
 # SystemRequirements: GNU make, Bash, Perl, Gzip
 requirements:
   host:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
     - r-base
     - r-colorspace
     - r-dynamictreecut
@@ -33,8 +34,8 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
     - r-base
     - r-colorspace
     - r-dynamictreecut
diff --git a/recipes/bioconductor-netdx/meta.yaml b/recipes/bioconductor-netdx/meta.yaml
index 5ccaf70bd86f4..4c60cf23c5c53 100644
--- a/recipes/bioconductor-netdx/meta.yaml
+++ b/recipes/bioconductor-netdx/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "netDx" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9ce730cb8934c6792d800eb5f32559f9
+  md5: 6fdc48ce518c74e0261acee84948ce26
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-netdx", max_pin="x.x") }}'
   noarch: generic
 # Suggests: curatedTCGAData, rmarkdown, testthat, knitr, BiocStyle, RCy3, clusterExperiment, netSmooth, scater
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-bigmemory
     - r-combinat
@@ -44,12 +45,12 @@ requirements:
     - r-rocr
     - r-rtsne
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-bigmemory
     - r-combinat
diff --git a/recipes/bioconductor-nethet/meta.yaml b/recipes/bioconductor-nethet/meta.yaml
index a3a9f0c858646..fa9f00d135eb1 100644
--- a/recipes/bioconductor-nethet/meta.yaml
+++ b/recipes/bioconductor-nethet/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "nethet" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: e0364a3984a014bf2108f461a2021433
+  md5: 35bc35cf08904b721563aa54e486cc95
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nethet", max_pin="x.x") }}'
 # Suggests: knitr, xtable, BiocStyle, testthat
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
     - r-compquadform
     - r-genenet
@@ -38,8 +39,8 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
     - r-compquadform
     - r-genenet
diff --git a/recipes/bioconductor-netomics/meta.yaml b/recipes/bioconductor-netomics/meta.yaml
index a27e24166b1ef..b64d798252c5b 100644
--- a/recipes/bioconductor-netomics/meta.yaml
+++ b/recipes/bioconductor-netomics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "netOmics" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 37282b31aeb12e9b3af18911b8dd523d
+  md5: 8ab3cf60546da2beea2e9c3630340c12
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-netomics", max_pin="x.x") }}'
   noarch: generic
 # Suggests: mixOmics, timeOmics, tidyverse, BiocStyle, testthat, covr, rmarkdown, knitr
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-minet >=3.58.0,<3.59.0'
-    - 'bioconductor-randomwalkrestartmh >=1.20.0,<1.21.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-minet >=3.60.0,<3.61.0'
+    - 'bioconductor-randomwalkrestartmh >=1.22.0,<1.23.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -35,10 +36,10 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-minet >=3.58.0,<3.59.0'
-    - 'bioconductor-randomwalkrestartmh >=1.20.0,<1.21.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-minet >=3.60.0,<3.61.0'
+    - 'bioconductor-randomwalkrestartmh >=1.22.0,<1.23.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-netpathminer/meta.yaml b/recipes/bioconductor-netpathminer/meta.yaml
index 5828131271fee..50aca74364875 100644
--- a/recipes/bioconductor-netpathminer/meta.yaml
+++ b/recipes/bioconductor-netpathminer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "NetPathMiner" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 76776ce19013b746222cfb08237367b2
+  md5: 91cc0601961f682fcf1a2bed61eb6438
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-netpathminer", max_pin="x.x") }}'
 # Suggests: rBiopaxParser (>= 2.1), RCurl, graph, knitr, rmarkdown, BiocStyle
 # SystemRequirements: libxml2, libSBML (>= 5.5)
 requirements:
   host:
     - r-base
-    - r-igraph
+    - 'r-igraph >=1.0'
     - libblas
     - liblapack
     - libxml2
   run:
     - r-base
-    - r-igraph
+    - 'r-igraph >=1.0'
     - libxml2
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-netprior/meta.yaml b/recipes/bioconductor-netprior/meta.yaml
index dd14ef112ba9b..146dd2bda1f80 100644
--- a/recipes/bioconductor-netprior/meta.yaml
+++ b/recipes/bioconductor-netprior/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "netprioR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 582d959f00a6f534f0cf141a80168936
+  md5: 7e4023edbe230057c85ae74d90f59fd1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-netprior", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, pander
 requirements:
diff --git a/recipes/bioconductor-netresponse/meta.yaml b/recipes/bioconductor-netresponse/meta.yaml
index 12cd8aed603e9..8f03e8e1a4efd 100644
--- a/recipes/bioconductor-netresponse/meta.yaml
+++ b/recipes/bioconductor-netresponse/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.60.0" %}
+{% set version = "1.62.0" %}
 {% set name = "netresponse" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 16f0c62907c79eb5d346ae329345310f
+  md5: 990c864cea311427d5af5f854edf4041
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-netresponse", max_pin="x.x") }}'
 # Suggests: knitr
 requirements:
   host:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-minet >=3.58.0,<3.59.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-minet >=3.60.0,<3.61.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-ggplot2
     - r-igraph
@@ -36,11 +37,11 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-minet >=3.58.0,<3.59.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-minet >=3.60.0,<3.61.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-ggplot2
     - r-igraph
@@ -57,8 +58,14 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'GPL (>=2)'
+  license: 'GPL-3.0-or-later'
   summary: 'Functional Network Analysis'
   description: 'Algorithms for functional network analysis. Includes an implementation of a variational Dirichlet process Gaussian mixture model for nonparametric mixture modeling.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
+
diff --git a/recipes/bioconductor-netsam/meta.yaml b/recipes/bioconductor-netsam/meta.yaml
index 4e91e0438b0a1..7bdf23012be6b 100644
--- a/recipes/bioconductor-netsam/meta.yaml
+++ b/recipes/bioconductor-netsam/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "NetSAM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cd6a61494b69858daa7ea594754eff4a
+  md5: 8248bae56028b8d8ee872cb007cbd7f5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-netsam", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, org.Sc.sgd.db, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, org.Dr.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db, org.At.tair.db, rmarkdown, knitr, markdown
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
     - r-base
     - 'r-dbi >=0.5-1'
     - 'r-doparallel >=1.0.10'
@@ -34,9 +35,9 @@ requirements:
     - 'r-survival >=2.37-7'
     - 'r-wgcna >=1.34.0'
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
     - r-base
     - 'r-dbi >=0.5-1'
     - 'r-doparallel >=1.0.10'
diff --git a/recipes/bioconductor-netsmooth/meta.yaml b/recipes/bioconductor-netsmooth/meta.yaml
index eaf08ae7dc387..8ba8209e5b286 100644
--- a/recipes/bioconductor-netsmooth/meta.yaml
+++ b/recipes/bioconductor-netsmooth/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "netSmooth" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 515bd1a10da3b5db97cce11ba66d0171
+  md5: 074a02c5cf8d32c2111268513d8404c5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-netsmooth", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, Rtsne, biomaRt, igraph, STRINGdb, NMI, pheatmap, ggplot2, BiocStyle, rmarkdown, BiocParallel, uwot
 requirements:
   host:
-    - 'bioconductor-clusterexperiment >=2.20.0,<2.21.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-clusterexperiment >=2.22.0,<2.23.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cluster
     - r-data.table
     - r-entropy
     - r-matrix
   run:
-    - 'bioconductor-clusterexperiment >=2.20.0,<2.21.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-clusterexperiment >=2.22.0,<2.23.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cluster
     - r-data.table
diff --git a/recipes/bioconductor-netzoor/meta.yaml b/recipes/bioconductor-netzoor/meta.yaml
index c94a5fb6ffe30..6091f5648d7f6 100644
--- a/recipes/bioconductor-netzoor/meta.yaml
+++ b/recipes/bioconductor-netzoor/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "netZooR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ab5dcac5e4394525a93ba72131f0f222
+  md5: 2f4adb3763df2df201212073e34bab10
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-netzoor", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 2.1.0), knitr, rmarkdown, pkgdown
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-pandar >=1.32.0,<1.33.0'
-    - 'bioconductor-rcy3 >=2.20.0,<2.21.0'
-    - 'bioconductor-stringdb >=2.12.0,<2.13.0'
-    - 'bioconductor-yarn >=1.26.0,<1.27.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-pandar >=1.34.0,<1.35.0'
+    - 'bioconductor-rcy3 >=2.22.0,<2.23.0'
+    - 'bioconductor-stringdb >=2.14.0,<2.15.0'
+    - 'bioconductor-yarn >=1.28.0,<1.29.0'
     - r-assertthat
     - r-base
     - r-data.table
@@ -53,15 +54,15 @@ requirements:
     - r-vegan
     - r-viridislite
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-pandar >=1.32.0,<1.33.0'
-    - 'bioconductor-rcy3 >=2.20.0,<2.21.0'
-    - 'bioconductor-stringdb >=2.12.0,<2.13.0'
-    - 'bioconductor-yarn >=1.26.0,<1.27.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-pandar >=1.34.0,<1.35.0'
+    - 'bioconductor-rcy3 >=2.22.0,<2.23.0'
+    - 'bioconductor-stringdb >=2.14.0,<2.15.0'
+    - 'bioconductor-yarn >=1.28.0,<1.29.0'
     - r-assertthat
     - r-base
     - r-data.table
diff --git a/recipes/bioconductor-neve2006/meta.yaml b/recipes/bioconductor-neve2006/meta.yaml
index 0103cfa7e4a8c..42228ba33d521 100644
--- a/recipes/bioconductor-neve2006/meta.yaml
+++ b/recipes/bioconductor-neve2006/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.38.0" %}
+{% set version = "0.40.0" %}
 {% set name = "Neve2006" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 77132d53a223319770a7abcf21d8e202
+  md5: 1feec2f09bac8c69ba9df5ea29e7e08c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-neve2006", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - 'bioconductor-hgu133a.db >=3.13.0,<3.14.0'
     - r-base
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - 'bioconductor-hgu133a.db >=3.13.0,<3.14.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-neve2006/post-link.sh b/recipes/bioconductor-neve2006/post-link.sh
index 427f48443403c..24e05c66b69e3 100644
--- a/recipes/bioconductor-neve2006/post-link.sh
+++ b/recipes/bioconductor-neve2006/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "neve2006-0.38.0"
+installBiocDataPackage.sh "neve2006-0.40.0"
diff --git a/recipes/bioconductor-newwave/build.sh b/recipes/bioconductor-newwave/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-newwave/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-newwave/meta.yaml b/recipes/bioconductor-newwave/meta.yaml
new file mode 100644
index 0000000000000..72507f5c6eb2b
--- /dev/null
+++ b/recipes/bioconductor-newwave/meta.yaml
@@ -0,0 +1,51 @@
+{% set version = "1.12.0" %}
+{% set name = "NewWave" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: ed222f643c357c84a7eb8534aa7b3a91
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-newwave", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: testthat, rmarkdown, splatter, mclust, Rtsne, ggplot2, Rcpp, BiocStyle, knitr
+requirements:
+  host:
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-sharedobject >=1.16.0,<1.17.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-irlba
+    - r-matrix
+  run:
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-sharedobject >=1.16.0,<1.17.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-irlba
+    - r-matrix
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'Negative binomial model for scRNA-seq'
+  description: 'A model designed for dimensionality reduction and batch effect removal for scRNA-seq data. It is designed to be massively parallelizable using shared objects that prevent memory duplication, and it can be used with different mini-batch approaches in order to reduce time consumption. It assumes a negative binomial distribution for the data with a dispersion parameter that can be both commonwise across gene both genewise.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-ngscopydata/meta.yaml b/recipes/bioconductor-ngscopydata/meta.yaml
index 9646ebf7b1a92..68de821e7a0fb 100644
--- a/recipes/bioconductor-ngscopydata/meta.yaml
+++ b/recipes/bioconductor-ngscopydata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "NGScopyData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e2d29d8d5f08328e350974da855da611
+  md5: 0ba77cf672a331e4c9dd90b26f41b5c6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ngscopydata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ngscopydata/post-link.sh b/recipes/bioconductor-ngscopydata/post-link.sh
index 192efa48a1bee..362855219f4b3 100644
--- a/recipes/bioconductor-ngscopydata/post-link.sh
+++ b/recipes/bioconductor-ngscopydata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "ngscopydata-1.20.0"
+installBiocDataPackage.sh "ngscopydata-1.22.0"
diff --git a/recipes/bioconductor-ngsreports/meta.yaml b/recipes/bioconductor-ngsreports/meta.yaml
index ea350d3c66571..185ed58b5bdcb 100644
--- a/recipes/bioconductor-ngsreports/meta.yaml
+++ b/recipes/bioconductor-ngsreports/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.2.4" %}
+{% set version = "2.4.0" %}
 {% set name = "ngsReports" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3fa618125cffae2c7a1059bc9caacf86
+  md5: c2d8c1f7a1869275420e05125fb1b420
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ngsreports", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, Cairo, knitr, testthat, truncnorm
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - r-checkmate
     - 'r-dplyr >=1.1.0'
@@ -47,8 +48,8 @@ requirements:
     - 'r-tidyselect >=0.2.3'
     - r-zoo
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - r-checkmate
     - 'r-dplyr >=1.1.0'
diff --git a/recipes/bioconductor-nipalsmcia/build.sh b/recipes/bioconductor-nipalsmcia/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-nipalsmcia/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-nipalsmcia/meta.yaml b/recipes/bioconductor-nipalsmcia/meta.yaml
new file mode 100644
index 0000000000000..bfba119094b74
--- /dev/null
+++ b/recipes/bioconductor-nipalsmcia/meta.yaml
@@ -0,0 +1,57 @@
+{% set version = "1.0.0" %}
+{% set name = "nipalsMCIA" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 0558d05ea61523c6fcaed9d8ed9b0ded
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nipalsmcia", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, circlize, ggpubr, KernSmooth, knitr, piggyback, reshape2, rmarkdown, rpart, Seurat (>= 4.0.0), spatstat.explore, stringr, survival, tidyverse, testthat (>= 3.0.0)
+requirements:
+  host:
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-dplyr
+    - 'r-ggplot2 >=3.0.0'
+    - r-pracma
+    - r-rlang
+    - r-rspectra
+    - r-scales
+  run:
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-dplyr
+    - 'r-ggplot2 >=3.0.0'
+    - r-pracma
+    - r-rlang
+    - r-rspectra
+    - r-scales
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'Multiple Co-Inertia Analysis via the NIPALS Method'
+  description: 'Computes Multiple Co-Inertia Analysis (MCIA), a dimensionality reduction (jDR) algorithm, for a multi-block dataset using a modification to the Nonlinear Iterative Partial Least Squares method (NIPALS) proposed in (Hanafi et. al, 2010). Allows multiple options for row- and table-level preprocessing, and speeds up computation of variance explained. Vignettes detail application to bulk- and single cell- multi-omics studies.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-nnnorm/meta.yaml b/recipes/bioconductor-nnnorm/meta.yaml
index 5f6340ae54b8f..ed154d75e8173 100644
--- a/recipes/bioconductor-nnnorm/meta.yaml
+++ b/recipes/bioconductor-nnnorm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.64.0" %}
+{% set version = "2.66.0" %}
 {% set name = "nnNorm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 32948108dfc1ce0d1a90c589af10149a
+  md5: f6e41106fc2afb44568c00dce1a36670
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nnnorm", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
     - r-nnet
   run:
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
     - r-nnet
 test:
diff --git a/recipes/bioconductor-nnsvg/meta.yaml b/recipes/bioconductor-nnsvg/meta.yaml
index 7720cd36de4a1..b04d39476984c 100644
--- a/recipes/bioconductor-nnsvg/meta.yaml
+++ b/recipes/bioconductor-nnsvg/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.1" %}
+{% set version = "1.6.0" %}
 {% set name = "nnSVG" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 226c134290d6643df454277b54b5d067
+  md5: 4af169b12d944eff8ee9d9e3063ff5ea
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nnsvg", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, STexampleData, WeberDivechaLCdata, scran, ggplot2, testthat
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-brisc
     - r-matrix
     - r-matrixstats
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-brisc
     - r-matrix
diff --git a/recipes/bioconductor-noiseq/meta.yaml b/recipes/bioconductor-noiseq/meta.yaml
index 6dae72b652d48..675fe63b421b6 100644
--- a/recipes/bioconductor-noiseq/meta.yaml
+++ b/recipes/bioconductor-noiseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.44.0" %}
+{% set version = "2.46.0" %}
 {% set name = "NOISeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 546e44e3bd29e9fe3a4d2d35d7eb04c1
+  md5: e7ea859871f96aa68269efa3a1e7dd46
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-noiseq", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - 'r-matrix >=1.2'
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - 'r-matrix >=1.2'
 test:
diff --git a/recipes/bioconductor-nondetects/meta.yaml b/recipes/bioconductor-nondetects/meta.yaml
index 7c27d12de272e..05ea32239f1d2 100644
--- a/recipes/bioconductor-nondetects/meta.yaml
+++ b/recipes/bioconductor-nondetects/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.30.0" %}
+{% set version = "2.32.0" %}
 {% set name = "nondetects" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 9b56e99e728154927bb62fb6c6120d0c
+  md5: 6507efbde0bbb76f863c731bcc8464bb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nondetects", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle (>= 1.0.0), RUnit, BiocGenerics (>= 0.8.0)
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-htqpcr >=1.54.0,<1.55.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-htqpcr >=1.56.0,<1.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-arm
     - r-base
     - r-mvtnorm
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-htqpcr >=1.54.0,<1.55.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-htqpcr >=1.56.0,<1.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-arm
     - r-base
     - r-mvtnorm
diff --git a/recipes/bioconductor-norce/meta.yaml b/recipes/bioconductor-norce/meta.yaml
index cbd2329e19012..8aea0cd7dd50e 100644
--- a/recipes/bioconductor-norce/meta.yaml
+++ b/recipes/bioconductor-norce/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "NoRCE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: eda53dbedd3a44f4b5416f2f3d2f77f0
+  md5: 8e3a1a53f9c68bc68ab881bd49e28ecb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-norce", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, TxDb.Hsapiens.UCSC.hg38.knownGene,TxDb.Drerio.UCSC.danRer10.refGene, TxDb.Mmusculus.UCSC.mm10.knownGene,TxDb.Dmelanogaster.UCSC.dm6.ensGene, testthat,TxDb.Celegans.UCSC.ce11.refGene,rmarkdown, TxDb.Rnorvegicus.UCSC.rn6.refGene,TxDb.Hsapiens.UCSC.hg19.knownGene, org.Mm.eg.db, org.Rn.eg.db,org.Hs.eg.db,org.Dr.eg.db,BiocGenerics, org.Sc.sgd.db, org.Ce.eg.db,org.Dm.eg.db, methods,markdown
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-reactome.db >=1.84.0,<1.85.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-rwikipathways >=1.20.0,<1.21.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-reactome.db >=1.86.0,<1.87.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-rwikipathways >=1.22.0,<1.23.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-dbi
     - r-dbplyr
@@ -49,20 +50,20 @@ requirements:
     - r-stringr
     - r-tidyr
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-reactome.db >=1.84.0,<1.85.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-rwikipathways >=1.20.0,<1.21.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-reactome.db >=1.86.0,<1.87.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-rwikipathways >=1.22.0,<1.23.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-dbi
     - r-dbplyr
diff --git a/recipes/bioconductor-normalize450k/meta.yaml b/recipes/bioconductor-normalize450k/meta.yaml
index d362f6a7ca9da..d3980f100fdc2 100644
--- a/recipes/bioconductor-normalize450k/meta.yaml
+++ b/recipes/bioconductor-normalize450k/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "normalize450K" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 09d6b4499a0f70e1071d1ddd963cc7f4
+  md5: f5ea0fdcbdd43103b5ee941c96fe43fa
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-normalize450k", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-illuminaio >=0.42.0,<0.43.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-illuminaio >=0.44.0,<0.45.0'
     - r-base
     - r-quadprog
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-illuminaio >=0.42.0,<0.43.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-illuminaio >=0.44.0,<0.45.0'
     - r-base
     - r-quadprog
 test:
diff --git a/recipes/bioconductor-normalyzerde/meta.yaml b/recipes/bioconductor-normalyzerde/meta.yaml
index b7b48ad46e2ee..73ac8ed4eadf9 100644
--- a/recipes/bioconductor-normalyzerde/meta.yaml
+++ b/recipes/bioconductor-normalyzerde/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "NormalyzerDE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ef1878f963a1376db00cfcdb34c8f6f9
+  md5: e55d57346b59dbd8b317a263e4b413b0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-normalyzerde", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, rmarkdown, roxygen2, hexbin, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-ape
     - r-base
     - r-car
@@ -33,14 +34,12 @@ requirements:
     - r-ggplot2
     - r-mass
     - r-matrixstats
-    - r-raster
-    - r-rcmdrmisc
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-ape
     - r-base
     - r-car
@@ -48,8 +47,6 @@ requirements:
     - r-ggplot2
     - r-mass
     - r-matrixstats
-    - r-raster
-    - r-rcmdrmisc
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-normqpcr/meta.yaml b/recipes/bioconductor-normqpcr/meta.yaml
index 78f8d1ce11160..79afa3c7882ff 100644
--- a/recipes/bioconductor-normqpcr/meta.yaml
+++ b/recipes/bioconductor-normqpcr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "NormqPCR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 26722c237731e8a7ed2dcb5f6babb676
+  md5: 379e7395ad03c0d57dffa7331748e253
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-normqpcr", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-readqpcr >=1.46.0,<1.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-readqpcr >=1.48.0,<1.49.0'
     - r-base
     - r-qpcr
     - r-rcolorbrewer
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-readqpcr >=1.46.0,<1.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-readqpcr >=1.48.0,<1.49.0'
     - r-base
     - r-qpcr
     - r-rcolorbrewer
diff --git a/recipes/bioconductor-normr/meta.yaml b/recipes/bioconductor-normr/meta.yaml
index 36cea3b30c3a2..7e2b0dacc4662 100644
--- a/recipes/bioconductor-normr/meta.yaml
+++ b/recipes/bioconductor-normr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "normr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 3d9b6c8514fcac077afbb985ba09d65b
+  md5: 06d294d5935656789cc44341eca46620
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-normr", max_pin="x.x") }}'
 # Suggests: BiocStyle, testthat (>= 1.0), knitr, rmarkdown
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-bamsignals >=1.32.0,<1.33.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-bamsignals >=1.34.0,<1.35.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - 'r-rcpp >=0.11'
     - libblas
     - liblapack
   run:
-    - 'bioconductor-bamsignals >=1.32.0,<1.33.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-bamsignals >=1.34.0,<1.35.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - 'r-rcpp >=0.11'
   build:
diff --git a/recipes/bioconductor-norway981.db/meta.yaml b/recipes/bioconductor-norway981.db/meta.yaml
index fc706e5452c15..71d94b527398a 100644
--- a/recipes/bioconductor-norway981.db/meta.yaml
+++ b/recipes/bioconductor-norway981.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "Norway981.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 85367390919bba9018438585e59fbb87
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-norway981.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-nparc/meta.yaml b/recipes/bioconductor-nparc/meta.yaml
index 77f43f2b02960..0c5bebf6db5c1 100644
--- a/recipes/bioconductor-nparc/meta.yaml
+++ b/recipes/bioconductor-nparc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "NPARC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6d5e6e63e7bc6f5681ae1e3e763b7aaa
+  md5: b49f408fb60e58d3c62cfd2d5d4809cb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nparc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, devtools, knitr, rprojroot, rmarkdown, ggplot2, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-broom
     - r-dplyr
@@ -30,7 +31,7 @@ requirements:
     - r-rlang
     - r-tidyr
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-broom
     - r-dplyr
diff --git a/recipes/bioconductor-npgsea/meta.yaml b/recipes/bioconductor-npgsea/meta.yaml
index e539c18eeb5e9..908e3b860253b 100644
--- a/recipes/bioconductor-npgsea/meta.yaml
+++ b/recipes/bioconductor-npgsea/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "npGSEA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: be25afa3330016c8a304b773601defd1
+  md5: 82d2208fe4478a1d5423940daa7128be
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-npgsea", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ALL, genefilter, limma, hgu95av2.db, ReportingTools, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-ntw/meta.yaml b/recipes/bioconductor-ntw/meta.yaml
index 2b28a78d7b9b5..61ef8840dc598 100644
--- a/recipes/bioconductor-ntw/meta.yaml
+++ b/recipes/bioconductor-ntw/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.50.0" %}
+{% set version = "1.52.0" %}
 {% set name = "NTW" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9a724372ec6201f37b22c2c5cc507483
+  md5: c64df447dfa43cbb3bf97922655ff516
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ntw", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-nucleosim/meta.yaml b/recipes/bioconductor-nucleosim/meta.yaml
index a7e44a2b153f8..3bfd2f9382492 100644
--- a/recipes/bioconductor-nucleosim/meta.yaml
+++ b/recipes/bioconductor-nucleosim/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "nucleoSim" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 54387b881dbc7f4ed750081a7d444f1f
+  md5: b1b994c654ce500e414a8a7caea5162f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nucleosim", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, BiocGenerics, knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-nucler/meta.yaml b/recipes/bioconductor-nucler/meta.yaml
index 2be954587e6bf..340e91083a435 100644
--- a/recipes/bioconductor-nucler/meta.yaml
+++ b/recipes/bioconductor-nucler/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.32.0" %}
+{% set version = "2.34.0" %}
 {% set name = "nucleR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,39 +11,40 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 033fb6cde8087be9add9a70235e27fb0
+  md5: 854586c378515ad6e2eefe2e1a09f394
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nucler", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - r-dplyr
     - r-ggplot2
     - r-magrittr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-nucpos/meta.yaml b/recipes/bioconductor-nucpos/meta.yaml
index 0f6d76078c045..4bc66b50e3842 100644
--- a/recipes/bioconductor-nucpos/meta.yaml
+++ b/recipes/bioconductor-nucpos/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "nuCpos" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d825e3c5513f7be0367edf8e72f114d9
+  md5: b029b2678c784645c2198f00093bd923
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nucpos", max_pin="x.x") }}'
   noarch: generic
 # Suggests: NuPoP, Biostrings, testthat
 requirements:
diff --git a/recipes/bioconductor-nugohs1a520180.db/meta.yaml b/recipes/bioconductor-nugohs1a520180.db/meta.yaml
index 2e57f0de3efb1..b418a0f7208e0 100644
--- a/recipes/bioconductor-nugohs1a520180.db/meta.yaml
+++ b/recipes/bioconductor-nugohs1a520180.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.4.0" %}
 {% set name = "nugohs1a520180.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: f83701b35b07e69e1ad503b546bb5eaf
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nugohs1a520180.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-nugohs1a520180cdf/meta.yaml b/recipes/bioconductor-nugohs1a520180cdf/meta.yaml
index f624518fc2b88..f90749d9e7a72 100644
--- a/recipes/bioconductor-nugohs1a520180cdf/meta.yaml
+++ b/recipes/bioconductor-nugohs1a520180cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.4.0" %}
 {% set name = "nugohs1a520180cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: aa152658a4a801cc0edb552a98aee841
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nugohs1a520180cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-nugohs1a520180probe/meta.yaml b/recipes/bioconductor-nugohs1a520180probe/meta.yaml
index 8134389eb12fd..f0bd987761f56 100644
--- a/recipes/bioconductor-nugohs1a520180probe/meta.yaml
+++ b/recipes/bioconductor-nugohs1a520180probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.4.0" %}
 {% set name = "nugohs1a520180probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 6acf20ac4a799eaae97d0a64426d6ac3
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nugohs1a520180probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-nugomm1a520177.db/meta.yaml b/recipes/bioconductor-nugomm1a520177.db/meta.yaml
index ca4aef5adf082..7be86d928b24d 100644
--- a/recipes/bioconductor-nugomm1a520177.db/meta.yaml
+++ b/recipes/bioconductor-nugomm1a520177.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.4.0" %}
 {% set name = "nugomm1a520177.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 99f69ea2cbb80a79bedee99e3d726e50
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nugomm1a520177.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-nugomm1a520177cdf/meta.yaml b/recipes/bioconductor-nugomm1a520177cdf/meta.yaml
index 749c80d468182..6e57813681d86 100644
--- a/recipes/bioconductor-nugomm1a520177cdf/meta.yaml
+++ b/recipes/bioconductor-nugomm1a520177cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.4.0" %}
 {% set name = "nugomm1a520177cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: fc60c2018580decaea30f09de55142fb
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nugomm1a520177cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-nugomm1a520177probe/meta.yaml b/recipes/bioconductor-nugomm1a520177probe/meta.yaml
index 7bf4085f23db2..1d994b823856e 100644
--- a/recipes/bioconductor-nugomm1a520177probe/meta.yaml
+++ b/recipes/bioconductor-nugomm1a520177probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.4.0" %}
 {% set name = "nugomm1a520177probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 7fa974389ad2be6ebda8810496221a9b
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nugomm1a520177probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-nullranges/meta.yaml b/recipes/bioconductor-nullranges/meta.yaml
index be1686768f962..61ea19b4a06cf 100644
--- a/recipes/bioconductor-nullranges/meta.yaml
+++ b/recipes/bioconductor-nullranges/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.2" %}
+{% set version = "1.8.0" %}
 {% set name = "nullranges" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 57d37d766de72195faa55f893e79debc
+  md5: 6ee32a46c332cfeefa89ebc2b32608bf
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nullranges", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, ks, DNAcopy, RcppHMM, AnnotationHub, ExperimentHub, nullrangesData, excluderanges, ensembldb, EnsDb.Hsapiens.v86, BSgenome.Hsapiens.UCSC.hg38, patchwork, plotgardener, dplyr, purrr, magrittr, tidyr, cobalt, DiagrammeR, tidySummarizedExperiment
 requirements:
   host:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-plyranges >=1.20.0,<1.21.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-ggplot2
@@ -35,12 +36,12 @@ requirements:
     - r-rlang
     - r-scales
   run:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-plyranges >=1.20.0,<1.21.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-ggplot2
diff --git a/recipes/bioconductor-nullrangesdata/meta.yaml b/recipes/bioconductor-nullrangesdata/meta.yaml
index 9d383cbff145a..357383664f328 100644
--- a/recipes/bioconductor-nullrangesdata/meta.yaml
+++ b/recipes/bioconductor-nullrangesdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "nullrangesData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 54631ad9bc1a63e3c981cb9df919a1a4
+  md5: c8b4cf63d70a2577251c03c093c014b1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nullrangesdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-nullrangesdata/post-link.sh b/recipes/bioconductor-nullrangesdata/post-link.sh
index caa8f21cc6151..56c49a53ff303 100644
--- a/recipes/bioconductor-nullrangesdata/post-link.sh
+++ b/recipes/bioconductor-nullrangesdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "nullrangesdata-1.6.0"
+installBiocDataPackage.sh "nullrangesdata-1.8.0"
diff --git a/recipes/bioconductor-nupop/meta.yaml b/recipes/bioconductor-nupop/meta.yaml
index 34a784ea5862f..95a7ccb26204e 100644
--- a/recipes/bioconductor-nupop/meta.yaml
+++ b/recipes/bioconductor-nupop/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.8.1" %}
+{% set version = "2.10.0" %}
 {% set name = "NuPoP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3f8fd1ab74555d543f34738389d28587
+  md5: 65372d828848fa588584e42324762643
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nupop", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown
 requirements:
   host:
diff --git a/recipes/bioconductor-nxtirfdata/meta.yaml b/recipes/bioconductor-nxtirfdata/meta.yaml
index d90d0eb06de8b..60c0e2b69d5f7 100644
--- a/recipes/bioconductor-nxtirfdata/meta.yaml
+++ b/recipes/bioconductor-nxtirfdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "NxtIRFdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 49c677044a8e671562fec6f64533b284
+  md5: 3d9c35f12650fe6e2eb413224b3590dc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-nxtirfdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 3.0.0), knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-r.utils
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-r.utils
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-nxtirfdata/post-link.sh b/recipes/bioconductor-nxtirfdata/post-link.sh
index 839225414a35a..bc8f830b35b74 100644
--- a/recipes/bioconductor-nxtirfdata/post-link.sh
+++ b/recipes/bioconductor-nxtirfdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "nxtirfdata-1.6.0"
+installBiocDataPackage.sh "nxtirfdata-1.8.0"
diff --git a/recipes/bioconductor-obmiti/meta.yaml b/recipes/bioconductor-obmiti/meta.yaml
index 0cfaa078750e0..a995f44ec42d3 100644
--- a/recipes/bioconductor-obmiti/meta.yaml
+++ b/recipes/bioconductor-obmiti/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "ObMiTi" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 679880ec1082c72dc04b91c7c43b86d1
+  md5: 0510665a5231cd3109d19478e4aadbd9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-obmiti", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocManager, GenomicFeatures, S4Vectors, devtools, testthat
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-obmiti/post-link.sh b/recipes/bioconductor-obmiti/post-link.sh
index 739594a5416ea..03b4d1416cd34 100644
--- a/recipes/bioconductor-obmiti/post-link.sh
+++ b/recipes/bioconductor-obmiti/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "obmiti-1.8.0"
+installBiocDataPackage.sh "obmiti-1.10.0"
diff --git a/recipes/bioconductor-occugene/meta.yaml b/recipes/bioconductor-occugene/meta.yaml
index 18d0068dc24ec..f5f74d87be869 100644
--- a/recipes/bioconductor-occugene/meta.yaml
+++ b/recipes/bioconductor-occugene/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.60.0" %}
+{% set version = "1.62.0" %}
 {% set name = "occugene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c3bc7c5109e680763202f69c7a35abce
+  md5: 264da1422714d735ac474b414e57a2a9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-occugene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-ocplus/meta.yaml b/recipes/bioconductor-ocplus/meta.yaml
index 2edb915b101ae..5dd736c909f68 100644
--- a/recipes/bioconductor-ocplus/meta.yaml
+++ b/recipes/bioconductor-ocplus/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.74.0" %}
+{% set version = "1.76.0" %}
 {% set name = "OCplus" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f1c461ba3d6b8e3310af4f823f80061c
+  md5: 8093ec3c635bc4ba57d27f42c6c85c48
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ocplus", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
     - r-interp
   run:
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
     - r-interp
 test:
diff --git a/recipes/bioconductor-oct4/meta.yaml b/recipes/bioconductor-oct4/meta.yaml
index d331169780dbd..14a38304a08b0 100644
--- a/recipes/bioconductor-oct4/meta.yaml
+++ b/recipes/bioconductor-oct4/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "oct4" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 733c8377b6b7065265506a938f1c7c09
+  md5: 1b6bbc6300c74c038689c7fb5b7d5eb2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-oct4", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, markdown
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-oct4/post-link.sh b/recipes/bioconductor-oct4/post-link.sh
index c58332df2a32d..b3235662475f3 100644
--- a/recipes/bioconductor-oct4/post-link.sh
+++ b/recipes/bioconductor-oct4/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "oct4-1.16.0"
+installBiocDataPackage.sh "oct4-1.18.0"
diff --git a/recipes/bioconductor-octad.db/meta.yaml b/recipes/bioconductor-octad.db/meta.yaml
index e249cf73495ec..a4fa56d807f6c 100644
--- a/recipes/bioconductor-octad.db/meta.yaml
+++ b/recipes/bioconductor-octad.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "octad.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 242e1f3e5df68b1ccbc324eaf3924797
+  md5: ef8723031fea32015ee26dbf30d2c8ba
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-octad.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-octad.db/post-link.sh b/recipes/bioconductor-octad.db/post-link.sh
index c9d4883ad95ce..2b1a3295db9c8 100644
--- a/recipes/bioconductor-octad.db/post-link.sh
+++ b/recipes/bioconductor-octad.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "octad.db-1.2.0"
+installBiocDataPackage.sh "octad.db-1.4.0"
diff --git a/recipes/bioconductor-octad/meta.yaml b/recipes/bioconductor-octad/meta.yaml
index 4b05424e89677..5247c0dddb66c 100644
--- a/recipes/bioconductor-octad/meta.yaml
+++ b/recipes/bioconductor-octad/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "octad" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 16534514ddcf3ab39f87e15eb20527dd
+  md5: 65dcd54e4646d61afcfb9afc90108ba4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-octad", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edaseq >=2.34.0,<2.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-gsva >=1.48.0,<1.49.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-octad.db >=1.2.0,<1.3.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-ruvseq >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edaseq >=2.36.0,<2.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-gsva >=1.50.0,<1.51.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-octad.db >=1.4.0,<1.5.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-ruvseq >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -45,18 +46,18 @@ requirements:
     - r-reshape2
     - r-rfast
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edaseq >=2.34.0,<2.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-gsva >=1.48.0,<1.49.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-octad.db >=1.2.0,<1.3.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-ruvseq >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edaseq >=2.36.0,<2.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-gsva >=1.50.0,<1.51.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-octad.db >=1.4.0,<1.5.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-ruvseq >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-dplyr
diff --git a/recipes/bioconductor-odseq/meta.yaml b/recipes/bioconductor-odseq/meta.yaml
index 80bde4e87ab53..15f186744d094 100644
--- a/recipes/bioconductor-odseq/meta.yaml
+++ b/recipes/bioconductor-odseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "odseq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 28a91ac69eb76e788013a765301cb90d
+  md5: 5eac4befb045c1d0531b13501f3aa880
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-odseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr(>= 1.11)
 requirements:
   host:
-    - 'bioconductor-kebabs >=1.34.0,<1.35.0'
-    - 'bioconductor-msa >=1.32.0,<1.33.0'
+    - 'bioconductor-kebabs >=1.36.0,<1.37.0'
+    - 'bioconductor-msa >=1.34.0,<1.35.0'
     - r-base
     - 'r-mclust >=5.1'
   run:
-    - 'bioconductor-kebabs >=1.34.0,<1.35.0'
-    - 'bioconductor-msa >=1.32.0,<1.33.0'
+    - 'bioconductor-kebabs >=1.36.0,<1.37.0'
+    - 'bioconductor-msa >=1.34.0,<1.35.0'
     - r-base
     - 'r-mclust >=5.1'
 test:
diff --git a/recipes/bioconductor-ogre/meta.yaml b/recipes/bioconductor-ogre/meta.yaml
index d41487802403a..31154fe4bd61b 100644
--- a/recipes/bioconductor-ogre/meta.yaml
+++ b/recipes/bioconductor-ogre/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "OGRE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8573ec05b2170c32440425eaa57567a7
+  md5: cff18fd2eda3eb1e67e9f7739fb9e773
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ogre", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 3.0.0), knitr (>= 1.36), rmarkdown (>= 2.11)
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-assertthat
     - r-base
     - r-data.table
@@ -39,13 +40,13 @@ requirements:
     - r-shinyfiles
     - r-tidyr
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-assertthat
     - r-base
     - r-data.table
diff --git a/recipes/bioconductor-oligo/meta.yaml b/recipes/bioconductor-oligo/meta.yaml
index d9592d51fb19e..b3a0210da009e 100644
--- a/recipes/bioconductor-oligo/meta.yaml
+++ b/recipes/bioconductor-oligo/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.64.1" %}
+{% set version = "1.66.0" %}
 {% set name = "oligo" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 0e40f8ea848ec94333feb3fc9d0cd7ac
+  md5: 3ba99dedbe0ebca2fcaa81a400777469
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-oligo", max_pin="x.x") }}'
 # Suggests: BSgenome.Hsapiens.UCSC.hg18, hapmap100kxba, pd.hg.u95av2, pd.mapping50k.xba240, pd.huex.1.0.st.v2, pd.hg18.60mer.expr, pd.hugene.1.0.st.v1, maqcExpression4plex, genefilter, limma, RColorBrewer, oligoData, BiocStyle, knitr, RUnit, biomaRt, AnnotationDbi, ACME, RCurl
 requirements:
   host:
-    - 'bioconductor-affxparser >=1.72.0,<1.73.0'
-    - 'bioconductor-affyio >=1.70.0,<1.71.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-affxparser >=1.74.0,<1.75.0'
+    - 'bioconductor-affyio >=1.72.0,<1.73.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - r-ff
@@ -35,14 +36,14 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-affxparser >=1.72.0,<1.73.0'
-    - 'bioconductor-affyio >=1.70.0,<1.71.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-affxparser >=1.74.0,<1.75.0'
+    - 'bioconductor-affyio >=1.72.0,<1.73.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - r-ff
diff --git a/recipes/bioconductor-oligoclasses/meta.yaml b/recipes/bioconductor-oligoclasses/meta.yaml
index da8d8b7d73f58..f580b7d23a33d 100644
--- a/recipes/bioconductor-oligoclasses/meta.yaml
+++ b/recipes/bioconductor-oligoclasses/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.62.0" %}
+{% set version = "1.64.0" %}
 {% set name = "oligoClasses" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 81ef026f64df521596ed8f336cf7c139
+  md5: 379f1364d7159e2456c9310556e990e6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-oligoclasses", max_pin="x.x") }}'
   noarch: generic
 # Suggests: hapmapsnp5, hapmapsnp6, pd.genomewidesnp.6, pd.genomewidesnp.5, pd.mapping50k.hind240, pd.mapping50k.xba240, pd.mapping250k.sty, pd.mapping250k.nsp, genomewidesnp6Crlmm (>= 1.0.7), genomewidesnp5Crlmm (>= 1.0.6), RUnit, human370v1cCrlmm, VanillaICE, crlmm
 requirements:
   host:
-    - 'bioconductor-affyio >=1.70.0,<1.71.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-affyio >=1.72.0,<1.73.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-biocmanager
     - r-dbi
@@ -36,14 +37,14 @@ requirements:
     - r-foreach
     - r-rsqlite
   run:
-    - 'bioconductor-affyio >=1.70.0,<1.71.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-affyio >=1.72.0,<1.73.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-biocmanager
     - r-dbi
diff --git a/recipes/bioconductor-oligodata/meta.yaml b/recipes/bioconductor-oligodata/meta.yaml
index f462620f0a2bb..3359689fb98fc 100644
--- a/recipes/bioconductor-oligodata/meta.yaml
+++ b/recipes/bioconductor-oligodata/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.8.0" %}
 {% set name = "oligoData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 9625cfd4b31bb575c4029a0632a7ee12
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-oligodata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: pd.hg.u95av2, pd.huex.1.0.st.v2, pd.mapping50k.xba240, pd.hg18.60mer.expr, pd.2006.07.18.hg18.refseq.promoter, pd.hugene.1.0.st.v1
 requirements:
   host:
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
     - r-base
   run:
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-olin/meta.yaml b/recipes/bioconductor-olin/meta.yaml
index 800c3a8724560..90100d3abd625 100644
--- a/recipes/bioconductor-olin/meta.yaml
+++ b/recipes/bioconductor-olin/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.78.0" %}
+{% set version = "1.80.0" %}
 {% set name = "OLIN" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 78861856588cb82ace6edbe1ab39c8f7
+  md5: 3a6ce43e9272204280a346c20012f710
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-olin", max_pin="x.x") }}'
   noarch: generic
 # Suggests: convert
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
     - r-locfit
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
     - r-locfit
 test:
diff --git a/recipes/bioconductor-olingui/meta.yaml b/recipes/bioconductor-olingui/meta.yaml
index dfc53412fb04a..229943f4192e8 100644
--- a/recipes/bioconductor-olingui/meta.yaml
+++ b/recipes/bioconductor-olingui/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.74.0" %}
+{% set version = "1.76.0" %}
 {% set name = "OLINgui" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8ae51f7c642bee5c4fd8e3734d838a59
+  md5: 5f960cc922153099a7b7a6e7ee939d9f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-olingui", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
-    - 'bioconductor-olin >=1.78.0,<1.79.0'
-    - 'bioconductor-tkwidgets >=1.78.0,<1.79.0'
-    - 'bioconductor-widgettools >=1.78.0,<1.79.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
+    - 'bioconductor-olin >=1.80.0,<1.81.0'
+    - 'bioconductor-tkwidgets >=1.80.0,<1.81.0'
+    - 'bioconductor-widgettools >=1.80.0,<1.81.0'
     - r-base
   run:
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
-    - 'bioconductor-olin >=1.78.0,<1.79.0'
-    - 'bioconductor-tkwidgets >=1.78.0,<1.79.0'
-    - 'bioconductor-widgettools >=1.78.0,<1.79.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
+    - 'bioconductor-olin >=1.80.0,<1.81.0'
+    - 'bioconductor-tkwidgets >=1.80.0,<1.81.0'
+    - 'bioconductor-widgettools >=1.80.0,<1.81.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-omada/meta.yaml b/recipes/bioconductor-omada/meta.yaml
index e0436b7414617..009cfe955a23d 100644
--- a/recipes/bioconductor-omada/meta.yaml
+++ b/recipes/bioconductor-omada/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.1.0" %}
+{% set version = "1.4.0" %}
 {% set name = "omada" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 86be333cce02f3ba85831756d5f599ff
+  md5: d214fdb20c51cbce86bf1d34c59cb84b
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-omada", max_pin="x.x") }}'
 # Suggests: rmarkdown, knitr, testthat
 requirements:
   host:
     - r-base
-    - 'r-clustercrit >=1.2.8'
     - 'r-clvalid >=0.7'
     - 'r-dicer >=0.6.0'
     - 'r-dplyr >=1.0.7'
     - 'r-fpc >=2.2-9'
+    - 'r-genieclust >=1.1.3'
     - 'r-ggplot2 >=3.3.5'
     - 'r-glmnet >=4.1.3'
     - 'r-kernlab >=0.9-29'
@@ -36,11 +37,11 @@ requirements:
     - liblapack
   run:
     - r-base
-    - 'r-clustercrit >=1.2.8'
     - 'r-clvalid >=0.7'
     - 'r-dicer >=0.6.0'
     - 'r-dplyr >=1.0.7'
     - 'r-fpc >=2.2-9'
+    - 'r-genieclust >=1.1.3'
     - 'r-ggplot2 >=3.3.5'
     - 'r-glmnet >=4.1.3'
     - 'r-kernlab >=0.9-29'
diff --git a/recipes/bioconductor-omadb/meta.yaml b/recipes/bioconductor-omadb/meta.yaml
index 9191ab18d378e..2f326296a255a 100644
--- a/recipes/bioconductor-omadb/meta.yaml
+++ b/recipes/bioconductor-omadb/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.16.0" %}
+{% set version = "2.18.0" %}
 {% set name = "OmaDB" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9bd7ca3376459757a00128152fde6617
+  md5: 4bfced261f7429c6e881e05dc45ec0d3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-omadb", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-ape
     - r-base
     - 'r-httr >=1.2.1'
     - r-jsonlite
     - 'r-plyr >=1.8.4'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-ape
     - r-base
     - 'r-httr >=1.2.1'
diff --git a/recipes/bioconductor-omicade4/meta.yaml b/recipes/bioconductor-omicade4/meta.yaml
index 11202dcd1613b..d1459a945c810 100644
--- a/recipes/bioconductor-omicade4/meta.yaml
+++ b/recipes/bioconductor-omicade4/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "omicade4" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: a22d04cdab97b81511ff76f4a8ca34fa
+  md5: ed6de2f603d54a9ad262ff62784818a2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-omicade4", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-made4 >=1.74.0,<1.75.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-made4 >=1.76.0,<1.77.0'
     - r-ade4
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-made4 >=1.74.0,<1.75.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-made4 >=1.76.0,<1.77.0'
     - r-ade4
     - r-base
 test:
diff --git a/recipes/bioconductor-omiccircos/meta.yaml b/recipes/bioconductor-omiccircos/meta.yaml
index 30c9f1733d7fc..38a85dda1eaff 100644
--- a/recipes/bioconductor-omiccircos/meta.yaml
+++ b/recipes/bioconductor-omiccircos/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "OmicCircos" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 82db65a2a816bf1811423176dc23a908
+  md5: 7d77b9a00853d3e6fec869012ce33daf
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-omiccircos", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-omicplotr/meta.yaml b/recipes/bioconductor-omicplotr/meta.yaml
index 43d68b9cf96ad..f4321b6264bdd 100644
--- a/recipes/bioconductor-omicplotr/meta.yaml
+++ b/recipes/bioconductor-omicplotr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "omicplotR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,16 +11,17 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2399395b2b761fa04cdb0370398db8ee
+  md5: 1ab1c2e82c98f8086b4dba4f65a613e7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-omicplotr", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-aldex2 >=1.32.0,<1.33.0'
+    - 'bioconductor-aldex2 >=1.34.0,<1.35.0'
     - r-base
     - r-compositions
     - r-dt
@@ -32,7 +33,7 @@ requirements:
     - r-vegan
     - r-zcompositions
   run:
-    - 'bioconductor-aldex2 >=1.32.0,<1.33.0'
+    - 'bioconductor-aldex2 >=1.34.0,<1.35.0'
     - r-base
     - r-compositions
     - r-dt
diff --git a/recipes/bioconductor-omicrexposome/meta.yaml b/recipes/bioconductor-omicrexposome/meta.yaml
index 1fdf6a1e7b990..b6b78aeaefd18 100644
--- a/recipes/bioconductor-omicrexposome/meta.yaml
+++ b/recipes/bioconductor-omicrexposome/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.2" %}
 {% set name = "omicRexposome" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 764e526f71b89b0846d239fc3b963904
+  md5: 3b7a896124164c0dd282c91c79d2db00
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-omicrexposome", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, snpStats, brgedata
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multidataset >=1.28.0,<1.29.0'
-    - 'bioconductor-omicade4 >=1.40.0,<1.41.0'
-    - 'bioconductor-rexposome >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multidataset >=1.30.0,<1.31.0'
+    - 'bioconductor-omicade4 >=1.42.0,<1.43.0'
+    - 'bioconductor-rexposome >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-ggplot2
     - r-ggrepel
@@ -37,13 +38,13 @@ requirements:
     - r-smartsva
     - r-stringr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multidataset >=1.28.0,<1.29.0'
-    - 'bioconductor-omicade4 >=1.40.0,<1.41.0'
-    - 'bioconductor-rexposome >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multidataset >=1.30.0,<1.31.0'
+    - 'bioconductor-omicade4 >=1.42.0,<1.43.0'
+    - 'bioconductor-rexposome >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-ggplot2
     - r-ggrepel
diff --git a/recipes/bioconductor-omicspca/meta.yaml b/recipes/bioconductor-omicspca/meta.yaml
index 962db73ce6c27..3dfa436153af2 100644
--- a/recipes/bioconductor-omicspca/meta.yaml
+++ b/recipes/bioconductor-omicspca/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "OMICsPCA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 72c763d94cf3a24deaa8a3a84913ee53
+  md5: d115069df9bde574c2439532f584f19a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-omicspca", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-helloranges >=1.26.0,<1.27.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-omicspcadata >=1.18.0,<1.19.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-helloranges >=1.28.0,<1.29.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-omicspcadata >=1.20.0,<1.21.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-cluster
     - r-clvalid
@@ -48,12 +49,12 @@ requirements:
     - r-rmarkdown
     - r-tidyr
   run:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-helloranges >=1.26.0,<1.27.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-omicspcadata >=1.18.0,<1.19.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-helloranges >=1.28.0,<1.29.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-omicspcadata >=1.20.0,<1.21.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-cluster
     - r-clvalid
diff --git a/recipes/bioconductor-omicspcadata/meta.yaml b/recipes/bioconductor-omicspcadata/meta.yaml
index ed5731bde2f4d..463dedac14b20 100644
--- a/recipes/bioconductor-omicspcadata/meta.yaml
+++ b/recipes/bioconductor-omicspcadata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "OMICsPCAdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 058c8440badd8afe17e693d3055fbf23
+  md5: ba3167fdf846cb80aea07162b88c9b73
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-omicspcadata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, kableExtra, rmarkdown
 requirements:
   host:
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
     - r-base
   run:
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-omicspcadata/post-link.sh b/recipes/bioconductor-omicspcadata/post-link.sh
index 2275b7d5f9fd8..ca5c61ccc8b1f 100644
--- a/recipes/bioconductor-omicspcadata/post-link.sh
+++ b/recipes/bioconductor-omicspcadata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "omicspcadata-1.18.0"
+installBiocDataPackage.sh "omicspcadata-1.20.0"
diff --git a/recipes/bioconductor-omicsprint/meta.yaml b/recipes/bioconductor-omicsprint/meta.yaml
index 6db33b6e24e67..43008f464b26c 100644
--- a/recipes/bioconductor-omicsprint/meta.yaml
+++ b/recipes/bioconductor-omicsprint/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "omicsPrint" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: bde78492e675b58b7797c253a972330a
+  md5: 4e45c908441cedfc0dac097c558e61f1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-omicsprint", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, GEOquery, VariantAnnotation, Rsamtools, BiocParallel, GenomicRanges, FDb.InfiniumMethylation.hg19, snpStats
 requirements:
   host:
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-raggedexperiment >=1.24.0,<1.25.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-raggedexperiment >=1.26.0,<1.27.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-mass
     - r-matrixstats
   run:
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-raggedexperiment >=1.24.0,<1.25.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-raggedexperiment >=1.26.0,<1.27.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-mass
     - r-matrixstats
diff --git a/recipes/bioconductor-omicsviewer/build_failure.linux-64.yaml b/recipes/bioconductor-omicsviewer/build_failure.linux-64.yaml
index 860b1ad27b912..42c095bbef5d2 100644
--- a/recipes/bioconductor-omicsviewer/build_failure.linux-64.yaml
+++ b/recipes/bioconductor-omicsviewer/build_failure.linux-64.yaml
@@ -1,8 +1,11 @@
-recipe_sha: a7735e832a66d80dfff55fe542bfee9b6a353575cd5dbf9ce52813c0ecb6eeb4  # The commit at which this recipe failed to build.
+recipe_sha: 239d6bdc75a778a6447bf4fc3495c2f506b1d9b087b303660bddf9344473faef  # The commit at which this recipe failed to build.
 skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+reason: |-
+  r-flatxml 0.1.1 would require r-base >=4.2,<4.3.0a0, which conflicts with any installable versions previously reported;
+category: |-
+  dependency issue
 log: |-
-  - Encountered problems while solving:
-  -   - package bioconductor-summarizedexperiment-1.30.2-r43hdfd78af_0 requires bioconductor-genomicranges >=1.52.0,<1.53.0, but none of the providers can be installed
+  -   - package bioconductor-summarizedexperiment-1.32.0-r43hdfd78af_0 requires bioconductor-delayedarray >=0.28.0,<0.29.0, but none of the providers can be installed
   -
 
   Leaving build/test directories:
@@ -25,48 +28,49 @@ log: |-
     File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 234, in solve
       raise RuntimeError("Solver could not find solution."  error_string)
   RuntimeError: Solver could not find solution.Mamba failed to solve:
-   - r-rcolorbrewer
-   - r-plotly
-   - bioconductor-biobase >=2.60.0,<2.61.0
-   - r-shinythemes
-   - r-shinyjs
-   - r-shinycssloaders
    - r-ggplot2
-   - r-shinybusy
    - r-matrixstats
-   - r-openxlsx
-   - r-rsqlite
-   - r-shiny
-   - bioconductor-s4vectors >=0.38.0,<0.39.0
-   - bioconductor-fgsea >=1.26.0,<1.27.0
+   - r-fastmatch
    - r-psych
-   - r-flatxml
-   - r-survminer
-   - r-base 4.3.*
+   - r-rsqlite
+   - bioconductor-summarizedexperiment >=1.32.0,<1.33.0
    - r-rocr
-   - r-stringr
-   - r-survival
-   - r-fastmatch
-   - r-beeswarm
+   - r-survminer
    - r-matrix
-   - r-dt
-   - r-shinywidgets
-   - r-reshape2
-   - r-ggseqlogo
-   - r-httr
-   - bioconductor-summarizedexperiment >=1.30.0,<1.31.0
+   - r-shinybusy
    - r-htmlwidgets
+   - r-rcolorbrewer
+   - bioconductor-fgsea >=1.28.0,<1.29.0
    - r-networkd3
+   - r-dt
+   - r-shinyjs
+   - r-plotly
+   - bioconductor-s4vectors >=0.40.0,<0.41.0
+   - r-ggseqlogo
    - r-curl
+   - r-flatxml
+   - r-shinythemes
+   - r-httr
+   - r-shinywidgets
+   - r-reshape2
+   - r-shiny
+   - r-base 4.3.*
+   - r-openxlsx
+   - r-stringr
+   - bioconductor-biobase >=2.62.0,<2.63.0
+   - r-shinycssloaders
+   - r-survival
+   - r-beeswarm
 
   with channels:
+   - file:///opt/host-conda-bld
    - conda-forge
    - bioconda
    - defaults
 
   The reported errors are:
   - Encountered problems while solving:
-  -   - package bioconductor-summarizedexperiment-1.30.2-r43hdfd78af_0 requires bioconductor-genomicranges >=1.52.0,<1.53.0, but none of the providers can be installed
+  -   - package bioconductor-summarizedexperiment-1.32.0-r43hdfd78af_0 requires bioconductor-delayedarray >=0.28.0,<0.29.0, but none of the providers can be installed
   -
 
   During handling of the above exception, another exception occurred:
@@ -100,5 +104,5 @@ log: |-
       actions = environ.get_install_actions(tmpdir, tuple(dependencies), env,
     File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 150, in mamba_get_install_actions
       raise err
-  conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("bioconductor-summarizedexperiment==1.30.2=r43hdfd78af_0"), MatchSpec("bioconductor-genomicranges[version='>=1.52.0,<1.53.0']")}
+  conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("bioconductor-summarizedexperiment==1.32.0=r43hdfd78af_0"), MatchSpec("bioconductor-delayedarray[version='>=0.28.0,<0.29.0']")}
 # Last 100 lines of the build log.
diff --git a/recipes/bioconductor-omicsviewer/meta.yaml b/recipes/bioconductor-omicsviewer/meta.yaml
index b457e664d14ce..bc96b7d767299 100644
--- a/recipes/bioconductor-omicsviewer/meta.yaml
+++ b/recipes/bioconductor-omicsviewer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "omicsViewer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ba3a9dc8fda84db3bbfd024389c9d4e6
+  md5: 7d650ff242a133610199a574a29abfde
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-omicsviewer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, unittest
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-beeswarm
     - r-curl
@@ -55,10 +56,10 @@ requirements:
     - r-survival
     - r-survminer
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-beeswarm
     - r-curl
diff --git a/recipes/bioconductor-omixer/meta.yaml b/recipes/bioconductor-omixer/meta.yaml
index be9e560a6cb29..5a6e3c4aa6eb1 100644
--- a/recipes/bioconductor-omixer/meta.yaml
+++ b/recipes/bioconductor-omixer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "Omixer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 71204a8a366fca0179c7c8d8df4e476f
+  md5: 6360569495c662f2c34c86dbd7387f4a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-omixer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, magick, testthat
 requirements:
diff --git a/recipes/bioconductor-omnipathr/meta.yaml b/recipes/bioconductor-omnipathr/meta.yaml
index 20fac42c22e3a..e3b362d4d7544 100644
--- a/recipes/bioconductor-omnipathr/meta.yaml
+++ b/recipes/bioconductor-omnipathr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.8.0" %}
+{% set version = "3.10.1" %}
 {% set name = "OmnipathR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,14 +11,15 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5026627a035e201129c1765133a2c3e4
+  md5: c51296b40e8d580f14dc3ff6839495f6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-omnipathr", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BiocStyle, biomaRt, bookdown, dnet, ggplot2, ggraph, gprofiler2, knitr, mlrMBO, parallelMap, ParamHelpers, Rgraphviz, smoof, supraHex, testthat
+# Suggests: BiocStyle, biomaRt, bookdown, dnet, ggplot2, ggraph, gprofiler2, knitr, mlrMBO, parallelMap, ParamHelpers, Rgraphviz, sigmajs, smoof, supraHex, testthat
 requirements:
   host:
     - r-base
@@ -26,12 +27,13 @@ requirements:
     - r-crayon
     - r-curl
     - r-digest
-    - r-dplyr
+    - 'r-dplyr >=1.1.0'
     - r-httr
     - r-igraph
     - r-jsonlite
     - r-later
     - r-logger
+    - r-lubridate
     - r-magrittr
     - r-progress
     - r-purrr
@@ -41,6 +43,7 @@ requirements:
     - r-rlang
     - r-rmarkdown
     - r-rvest
+    - r-stringi
     - r-stringr
     - r-tibble
     - r-tidyr
@@ -54,12 +57,13 @@ requirements:
     - r-crayon
     - r-curl
     - r-digest
-    - r-dplyr
+    - 'r-dplyr >=1.1.0'
     - r-httr
     - r-igraph
     - r-jsonlite
     - r-later
     - r-logger
+    - r-lubridate
     - r-magrittr
     - r-progress
     - r-purrr
@@ -69,6 +73,7 @@ requirements:
     - r-rlang
     - r-rmarkdown
     - r-rvest
+    - r-stringi
     - r-stringr
     - r-tibble
     - r-tidyr
diff --git a/recipes/bioconductor-ompbam/meta.yaml b/recipes/bioconductor-ompbam/meta.yaml
index 211fce60b8a72..87ebc1481b424 100644
--- a/recipes/bioconductor-ompbam/meta.yaml
+++ b/recipes/bioconductor-ompbam/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "ompBAM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 118828a1b81d93cb734b85dfa7dea65c
+  md5: 9e9d31ddcad0b4bb4acb30ad970a0cd5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ompbam", max_pin="x.x") }}'
 # Suggests: RcppProgress, knitr, rmarkdown, roxygen2, devtools, usethis, desc, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-rcpp
     - libblas
     - liblapack
   run:
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-rcpp
   build:
diff --git a/recipes/bioconductor-onassisjavalibs/meta.yaml b/recipes/bioconductor-onassisjavalibs/meta.yaml
index aa33d15402a43..d2c32d35b58e1 100644
--- a/recipes/bioconductor-onassisjavalibs/meta.yaml
+++ b/recipes/bioconductor-onassisjavalibs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "OnassisJavaLibs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 32a85e21248ac13de54dfee722eee3f1
+  md5: 88d86bc7e7d339146ba7ea689c2d8080
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-onassisjavalibs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, rmarkdown, knitr
 # SystemRequirements: Java (>= 1.8)
@@ -29,7 +30,7 @@ requirements:
     - r-base
     - r-rjava
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
     - openjdk
 test:
   commands:
diff --git a/recipes/bioconductor-onassisjavalibs/post-link.sh b/recipes/bioconductor-onassisjavalibs/post-link.sh
index c9c7f57e98503..2e98dfca3f0c9 100644
--- a/recipes/bioconductor-onassisjavalibs/post-link.sh
+++ b/recipes/bioconductor-onassisjavalibs/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "onassisjavalibs-1.22.0"
+installBiocDataPackage.sh "onassisjavalibs-1.24.0"
diff --git a/recipes/bioconductor-oncomix/meta.yaml b/recipes/bioconductor-oncomix/meta.yaml
index 403e8e73f96ce..e3d50be1cdf3e 100644
--- a/recipes/bioconductor-oncomix/meta.yaml
+++ b/recipes/bioconductor-oncomix/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "oncomix" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 366323b113f34a562f6a3fe523595cb0
+  md5: dd6381604152d7cb96f7c592e8f82ab7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-oncomix", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, RMySQL
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-ggrepel
     - r-mclust
     - r-rcolorbrewer
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-ggrepel
diff --git a/recipes/bioconductor-oncoscanr/meta.yaml b/recipes/bioconductor-oncoscanr/meta.yaml
index 3479ba987b17b..84d19dea331fa 100644
--- a/recipes/bioconductor-oncoscanr/meta.yaml
+++ b/recipes/bioconductor-oncoscanr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "oncoscanR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 80e05d30297850d138e26ad1ccc9f51c
+  md5: 48aee6850c94c299417e75cf74418b01
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-oncoscanr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 3.1.4), jsonlite, knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-magrittr
     - r-readr
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-magrittr
     - r-readr
diff --git a/recipes/bioconductor-oncoscore/meta.yaml b/recipes/bioconductor-oncoscore/meta.yaml
index b8102697059ad..f85345b846e04 100644
--- a/recipes/bioconductor-oncoscore/meta.yaml
+++ b/recipes/bioconductor-oncoscore/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "OncoScore" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 62b68dec725d2a79df4d45eb05fbfe86
+  md5: 5b61a8738f91d4c8ff214b38878a8564
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-oncoscore", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, BiocStyle, knitr, testthat,
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
     - r-base
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-oncosimulr/build.sh b/recipes/bioconductor-oncosimulr/build.sh
index 8723af305997a..ac78ea511ccf4 100644
--- a/recipes/bioconductor-oncosimulr/build.sh
+++ b/recipes/bioconductor-oncosimulr/build.sh
@@ -11,4 +11,4 @@ CXX14=$CXX" > ~/.R/Makevars
 if [[ $OSTYPE == "darwin"* ]]; then
   sed -i.bak "s/OncoSimulR.so/OncoSimulR.dylib/g" src/install.libs.R
 fi
-$R CMD INSTALL --build .
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-oncosimulr/meta.yaml b/recipes/bioconductor-oncosimulr/meta.yaml
index 1a46c55588f7a..daa4bec2d291d 100644
--- a/recipes/bioconductor-oncosimulr/meta.yaml
+++ b/recipes/bioconductor-oncosimulr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "4.2.0" %}
+{% set version = "4.4.0" %}
 {% set name = "OncoSimulR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 741c17927e4a7a2022f6d757602e3c72
+  md5: 9b908040a100f075d4f2493ec3c1fa85
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-oncosimulr", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, Oncotree, testthat (>= 1.0.0), rmarkdown, bookdown, pander
 requirements:
   host:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-car
     - r-data.table
@@ -37,8 +38,8 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-car
     - r-data.table
diff --git a/recipes/bioconductor-onlinefdr/meta.yaml b/recipes/bioconductor-onlinefdr/meta.yaml
index 2ad6e39347b96..24c6eefdc5faf 100644
--- a/recipes/bioconductor-onlinefdr/meta.yaml
+++ b/recipes/bioconductor-onlinefdr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.8.0" %}
+{% set version = "2.10.0" %}
 {% set name = "onlineFDR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9f9a9d661fcecba747e4229d4e6cf920
+  md5: 1fcb84d6fd99c3f48d43c07adc29f256
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-onlinefdr", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, testthat, covr
 requirements:
   host:
diff --git a/recipes/bioconductor-ontoproc/meta.yaml b/recipes/bioconductor-ontoproc/meta.yaml
index b8b5cfba1fd90..ebdd3376d7bee 100644
--- a/recipes/bioconductor-ontoproc/meta.yaml
+++ b/recipes/bioconductor-ontoproc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "ontoProc" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9b292bc23074c04cfed8987658c6cafc
+  md5: 157cb78951de651c6be909aef51480a5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ontoproc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, org.Hs.eg.db, org.Mm.eg.db, testthat, BiocStyle, SingleCellExperiment, celldex, rmarkdown, AnnotationDbi
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-dt
@@ -37,13 +38,13 @@ requirements:
     - r-ontologyplot
     - r-shiny
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-dt
diff --git a/recipes/bioconductor-ontoprocdata/meta.yaml b/recipes/bioconductor-ontoprocdata/meta.yaml
index d71b56dc9f9ba..b0247d4b82b11 100644
--- a/recipes/bioconductor-ontoprocdata/meta.yaml
+++ b/recipes/bioconductor-ontoprocdata/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.9901" %}
 {% set name = "ontoProcData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: d4160c1fc853db468ce73c7fe62ca00f
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ontoprocdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 3.0.0), AnnotationHub, utils, knitr, rmarkdown
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-opencyto/meta.yaml b/recipes/bioconductor-opencyto/meta.yaml
index 2e2d3584c5621..6c2923914d7d3 100644
--- a/recipes/bioconductor-opencyto/meta.yaml
+++ b/recipes/bioconductor-opencyto/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.12.0" %}
+{% set version = "2.14.0" %}
 {% set name = "openCyto" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fabe8dc6a63062ffd1b3fefadeb787b5
+  md5: 04a62bb1960f008fc218686296a3118d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-opencyto", max_pin="x.x") }}'
 # Suggests: flowWorkspaceData, knitr, rmarkdown, markdown, testthat, utils, tools, parallel, ggcyto, CytoML, flowStats(>= 4.5.2), MASS
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-flowclust >=3.38.0,<3.39.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowviz >=1.64.0,<1.65.0'
-    - 'bioconductor-flowworkspace >=4.12.0,<4.13.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-ncdfflow >=2.46.0,<2.47.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-flowclust >=3.40.0,<3.41.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowviz >=1.66.0,<1.67.0'
+    - 'bioconductor-flowworkspace >=4.14.0,<4.15.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-ncdfflow >=2.48.0,<2.49.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
     - r-base
     - r-bh
     - r-cpp11
@@ -37,15 +38,15 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-flowclust >=3.38.0,<3.39.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowviz >=1.64.0,<1.65.0'
-    - 'bioconductor-flowworkspace >=4.12.0,<4.13.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-ncdfflow >=2.46.0,<2.47.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-flowclust >=3.40.0,<3.41.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowviz >=1.66.0,<1.67.0'
+    - 'bioconductor-flowworkspace >=4.14.0,<4.15.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-ncdfflow >=2.48.0,<2.49.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
     - r-base
     - r-bh
     - r-cpp11
diff --git a/recipes/bioconductor-openprimer/meta.yaml b/recipes/bioconductor-openprimer/meta.yaml
index d0e580bce2926..e7ebaf881fc1c 100644
--- a/recipes/bioconductor-openprimer/meta.yaml
+++ b/recipes/bioconductor-openprimer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "openPrimeR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 105634c21aebdcf44ef3c0151664e343
+  md5: e3fe2285d832b192c7054a36e2aedc6b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-openprimer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 1.0.2), knitr (>= 1.13), rmarkdown (>= 1.0), devtools (>= 1.12.0), doParallel (>= 1.0.10), pander (>= 0.6.0), learnr (>= 0.9)
 # SystemRequirements: MAFFT (>= 7.305), OligoArrayAux (>= 3.8), ViennaRNA (>= 2.4.1), MELTING (>= 5.1.1), Pandoc (>= 1.12.3)
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-decipher >=2.28.0,<2.29.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-decipher >=2.30.0,<2.31.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'r-ape >=3.5'
     - r-base
     - 'r-digest >=0.6.9'
@@ -52,12 +53,12 @@ requirements:
     - 'r-xml >=3.98-1.4'
     - 'mafft >=7.305'
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-decipher >=2.28.0,<2.29.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-decipher >=2.30.0,<2.31.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'r-ape >=3.5'
     - r-base
     - 'r-digest >=0.6.9'
diff --git a/recipes/bioconductor-openprimerui/meta.yaml b/recipes/bioconductor-openprimerui/meta.yaml
index 99cb97ce36f13..c0bfddd6d19af 100644
--- a/recipes/bioconductor-openprimerui/meta.yaml
+++ b/recipes/bioconductor-openprimerui/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "openPrimeRui" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 365ce6ca2bb48726abf97ca874a6f6da
+  md5: 11cb9510b6a6ecdbc8df2d5c2497d029
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-openprimerui", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr (>= 1.13)
 requirements:
   host:
-    - 'bioconductor-openprimer >=1.22.0,<1.23.0'
+    - 'bioconductor-openprimer >=1.24.0,<1.25.0'
     - r-base
     - 'r-dt >=0.2'
     - 'r-rmarkdown >=1.0'
@@ -29,7 +30,7 @@ requirements:
     - 'r-shinybs >=0.61'
     - 'r-shinyjs >=0.9'
   run:
-    - 'bioconductor-openprimer >=1.22.0,<1.23.0'
+    - 'bioconductor-openprimer >=1.24.0,<1.25.0'
     - r-base
     - 'r-dt >=0.2'
     - 'r-rmarkdown >=1.0'
diff --git a/recipes/bioconductor-openstats/meta.yaml b/recipes/bioconductor-openstats/meta.yaml
index 73794c3fe60c9..f78c9bcdf4b49 100644
--- a/recipes/bioconductor-openstats/meta.yaml
+++ b/recipes/bioconductor-openstats/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "OpenStats" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7930395c0dc75c56e7f67cfef6526ac1
+  md5: 0e8a0fcd25ca1377c5bce5068bfaabff
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-openstats", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown
 requirements:
diff --git a/recipes/bioconductor-operonhumanv3.db/meta.yaml b/recipes/bioconductor-operonhumanv3.db/meta.yaml
index e859629198e93..c1bf73b30fa4b 100644
--- a/recipes/bioconductor-operonhumanv3.db/meta.yaml
+++ b/recipes/bioconductor-operonhumanv3.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "OperonHumanV3.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 648da5d4d63c6c8327f6035ee09f2b65
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-operonhumanv3.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-opossom/meta.yaml b/recipes/bioconductor-opossom/meta.yaml
index 368d85fca06ae..131a22582ed1a 100644
--- a/recipes/bioconductor-opossom/meta.yaml
+++ b/recipes/bioconductor-opossom/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.18.0" %}
+{% set version = "2.20.0" %}
 {% set name = "oposSOM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8d0e76bf961fef11d0ae091eec82824b
+  md5: a5660824c13db2ae8bf7b79aa7c529f5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-opossom", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-ape
     - r-base
     - r-fastica
@@ -38,9 +39,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-ape
     - r-base
     - r-fastica
diff --git a/recipes/bioconductor-oppar/meta.yaml b/recipes/bioconductor-oppar/meta.yaml
index dabd8ae7baf3b..9546c106c3853 100644
--- a/recipes/bioconductor-oppar/meta.yaml
+++ b/recipes/bioconductor-oppar/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "oppar" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: aa9223b057764734655c8cdbbe8dc740
+  md5: 21adf37b9236cf860009e709f63d5e30
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-oppar", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, limma, org.Hs.eg.db, GO.db, snow, parallel
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-gsva >=1.48.0,<1.49.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-gsva >=1.50.0,<1.51.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-gsva >=1.48.0,<1.49.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-gsva >=1.50.0,<1.51.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-oppti/meta.yaml b/recipes/bioconductor-oppti/meta.yaml
index 8a401c37715a6..ceb9efd135c77 100644
--- a/recipes/bioconductor-oppti/meta.yaml
+++ b/recipes/bioconductor-oppti/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "oppti" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: ee66d8bc8d637cf14d5724387ffd3894
+  md5: 8f995db99b66e966a96b8ce150c956a7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-oppti", max_pin="x.x") }}'
   noarch: generic
 # Suggests: markdown
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-devtools
     - r-ggplot2
@@ -31,7 +32,7 @@ requirements:
     - r-rcolorbrewer
     - r-reshape
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-devtools
     - r-ggplot2
diff --git a/recipes/bioconductor-optimalflow/meta.yaml b/recipes/bioconductor-optimalflow/meta.yaml
index c7ba7fd84a780..992876df6f621 100644
--- a/recipes/bioconductor-optimalflow/meta.yaml
+++ b/recipes/bioconductor-optimalflow/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "optimalFlow" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fff3df9b484a19d62f4c06e763a554ea
+  md5: c66127dc23a70fdcfd651543ea596329
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-optimalflow", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, rmarkdown, magick
 requirements:
   host:
-    - 'bioconductor-flowmeans >=1.60.0,<1.61.0'
-    - 'bioconductor-optimalflowdata >=1.12.0,<1.13.0'
+    - 'bioconductor-flowmeans >=1.62.0,<1.63.0'
+    - 'bioconductor-optimalflowdata >=1.14.0,<1.15.0'
     - r-base
     - r-dbscan
     - r-doparallel
@@ -36,8 +37,8 @@ requirements:
     - r-robustbase
     - r-transport
   run:
-    - 'bioconductor-flowmeans >=1.60.0,<1.61.0'
-    - 'bioconductor-optimalflowdata >=1.12.0,<1.13.0'
+    - 'bioconductor-flowmeans >=1.62.0,<1.63.0'
+    - 'bioconductor-optimalflowdata >=1.14.0,<1.15.0'
     - r-base
     - r-dbscan
     - r-doparallel
diff --git a/recipes/bioconductor-optimalflowdata/meta.yaml b/recipes/bioconductor-optimalflowdata/meta.yaml
index 4b1bf0bf2330b..d65bee9574e4b 100644
--- a/recipes/bioconductor-optimalflowdata/meta.yaml
+++ b/recipes/bioconductor-optimalflowdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "optimalFlowData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: daba5d6a8b8fdde9d58fed555c569ad5
+  md5: 790ea8af88ecf90abafdef9a7c4abb08
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-optimalflowdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, rmarkdown, magick
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-optimalflowdata/post-link.sh b/recipes/bioconductor-optimalflowdata/post-link.sh
index a58d0484a9929..0a5ec1a8c8c2a 100644
--- a/recipes/bioconductor-optimalflowdata/post-link.sh
+++ b/recipes/bioconductor-optimalflowdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "optimalflowdata-1.12.0"
+installBiocDataPackage.sh "optimalflowdata-1.14.0"
diff --git a/recipes/bioconductor-opweight/meta.yaml b/recipes/bioconductor-opweight/meta.yaml
index 82f1af5964129..cd88a4afed9cd 100644
--- a/recipes/bioconductor-opweight/meta.yaml
+++ b/recipes/bioconductor-opweight/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "OPWeight" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a33f46eeb9e69082fdd9a89cb7a5f23c
+  md5: 83d9a0007e617f317f9424a4c228c50a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-opweight", max_pin="x.x") }}'
   noarch: generic
 # Suggests: airway, BiocStyle, cowplot, DESeq2, devtools, ggplot2, gridExtra, knitr, Matrix, rmarkdown, scales, testthat
 requirements:
   host:
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
     - r-mass
     - r-tibble
   run:
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
     - r-mass
     - r-tibble
diff --git a/recipes/bioconductor-orderedlist/meta.yaml b/recipes/bioconductor-orderedlist/meta.yaml
index d4fc2fe472c0a..6be59704a0e91 100644
--- a/recipes/bioconductor-orderedlist/meta.yaml
+++ b/recipes/bioconductor-orderedlist/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "OrderedList" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 352cb6d578f4aa28920229c8844fe469
+  md5: d8239906b10a2630dc25ab749903a511
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-orderedlist", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-twilight >=1.76.0,<1.77.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-twilight >=1.78.0,<1.79.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-twilight >=1.76.0,<1.77.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-twilight >=1.78.0,<1.79.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-orfhunter/meta.yaml b/recipes/bioconductor-orfhunter/meta.yaml
index 67b3d4b0cdee9..239909d4356a3 100644
--- a/recipes/bioconductor-orfhunter/meta.yaml
+++ b/recipes/bioconductor-orfhunter/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "ORFhunteR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: de379db06acbc82ad053e95517675ebf
+  md5: c9e57a998b0746df96e6d173d75fd032
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-orfhunter", max_pin="x.x") }}'
 # Suggests: knitr, BiocStyle, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg38 >=1.4.0,<1.5.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-data.table
     - r-peptides
@@ -33,9 +34,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg38 >=1.4.0,<1.5.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-data.table
     - r-peptides
diff --git a/recipes/bioconductor-orfik/meta.yaml b/recipes/bioconductor-orfik/meta.yaml
index a443240ae3bdb..3a5075e7dd6ce 100644
--- a/recipes/bioconductor-orfik/meta.yaml
+++ b/recipes/bioconductor-orfik/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "ORFik" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,38 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 712d98a9513f8a55085f3269902744f2
+  md5: 80a8144faafb88fcd9745dcfce492512
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-orfik", max_pin="x.x") }}'
 # Suggests: testthat, rmarkdown, knitr, BiocStyle, BSgenome.Hsapiens.UCSC.hg19
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-biomartr
     - 'r-cowplot >=1.0.0'
+    - r-curl
     - 'r-data.table >=1.11.8'
+    - r-downloader
     - 'r-fst >=0.9.2'
     - 'r-ggplot2 >=2.2.1'
     - 'r-gridextra >=2.3'
@@ -47,30 +50,35 @@ requirements:
     - r-jsonlite
     - r-r.utils
     - 'r-rcpp >=1.0.0'
+    - r-rcurl
+    - r-withr
+    - r-xml
     - 'r-xml2 >=1.2.0'
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-biomartr
     - 'r-cowplot >=1.0.0'
+    - r-curl
     - 'r-data.table >=1.11.8'
+    - r-downloader
     - 'r-fst >=0.9.2'
     - 'r-ggplot2 >=2.2.1'
     - 'r-gridextra >=2.3'
@@ -78,6 +86,9 @@ requirements:
     - r-jsonlite
     - r-r.utils
     - 'r-rcpp >=1.0.0'
+    - r-rcurl
+    - r-withr
+    - r-xml
     - 'r-xml2 >=1.2.0'
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-org.ag.eg.db/meta.yaml b/recipes/bioconductor-org.ag.eg.db/meta.yaml
index 1051e8dd1d8c4..6a62269c6da3b 100644
--- a/recipes/bioconductor-org.ag.eg.db/meta.yaml
+++ b/recipes/bioconductor-org.ag.eg.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "org.Ag.eg.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fb3e06ad1afc3c386367a239e559f342
+  md5: a67c309f5472338fd47fe43ff20ce2e5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-org.ag.eg.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-org.ag.eg.db/post-link.sh b/recipes/bioconductor-org.ag.eg.db/post-link.sh
index b668057bfacd7..914a57fe474f6 100644
--- a/recipes/bioconductor-org.ag.eg.db/post-link.sh
+++ b/recipes/bioconductor-org.ag.eg.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "org.ag.eg.db-3.17.0"
+installBiocDataPackage.sh "org.ag.eg.db-3.18.0"
diff --git a/recipes/bioconductor-org.at.tair.db/meta.yaml b/recipes/bioconductor-org.at.tair.db/meta.yaml
index 23f5054e0fde6..6ed40899b87cc 100644
--- a/recipes/bioconductor-org.at.tair.db/meta.yaml
+++ b/recipes/bioconductor-org.at.tair.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "org.At.tair.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 568e09bfbf9b86a9120b52ca6eb47879
+  md5: 5d6161b859de99eaeadebc0e03ae9c68
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-org.at.tair.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-org.at.tair.db/post-link.sh b/recipes/bioconductor-org.at.tair.db/post-link.sh
index 96929528fea52..4fbdf92ea3f91 100644
--- a/recipes/bioconductor-org.at.tair.db/post-link.sh
+++ b/recipes/bioconductor-org.at.tair.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "org.at.tair.db-3.17.0"
+installBiocDataPackage.sh "org.at.tair.db-3.18.0"
diff --git a/recipes/bioconductor-org.bt.eg.db/meta.yaml b/recipes/bioconductor-org.bt.eg.db/meta.yaml
index a83cc489b9227..c0fef6c777d07 100644
--- a/recipes/bioconductor-org.bt.eg.db/meta.yaml
+++ b/recipes/bioconductor-org.bt.eg.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "org.Bt.eg.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 13b2350bb7e6219a25caea3a4038f104
+  md5: 23fd8017323c86930c50d596204bad54
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-org.bt.eg.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-org.bt.eg.db/post-link.sh b/recipes/bioconductor-org.bt.eg.db/post-link.sh
index 6b094edee61d3..cd489eb184530 100644
--- a/recipes/bioconductor-org.bt.eg.db/post-link.sh
+++ b/recipes/bioconductor-org.bt.eg.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "org.bt.eg.db-3.17.0"
+installBiocDataPackage.sh "org.bt.eg.db-3.18.0"
diff --git a/recipes/bioconductor-org.ce.eg.db/meta.yaml b/recipes/bioconductor-org.ce.eg.db/meta.yaml
index dc4e0188f33c5..495acc87d6521 100644
--- a/recipes/bioconductor-org.ce.eg.db/meta.yaml
+++ b/recipes/bioconductor-org.ce.eg.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "org.Ce.eg.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8884864a691574d7640b2059a8d6613b
+  md5: 441a5efb4649a1201b5552b14c1f1cef
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-org.ce.eg.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-org.ce.eg.db/post-link.sh b/recipes/bioconductor-org.ce.eg.db/post-link.sh
index 7f5644e45824a..2bdc66737e6a1 100644
--- a/recipes/bioconductor-org.ce.eg.db/post-link.sh
+++ b/recipes/bioconductor-org.ce.eg.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "org.ce.eg.db-3.17.0"
+installBiocDataPackage.sh "org.ce.eg.db-3.18.0"
diff --git a/recipes/bioconductor-org.cf.eg.db/meta.yaml b/recipes/bioconductor-org.cf.eg.db/meta.yaml
index dc71863d364c4..67f62fb8f70c8 100644
--- a/recipes/bioconductor-org.cf.eg.db/meta.yaml
+++ b/recipes/bioconductor-org.cf.eg.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "org.Cf.eg.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 594a306e7ac757df56e9563163168713
+  md5: 038d08c046a81218a31ff8db0877dd15
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-org.cf.eg.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-org.cf.eg.db/post-link.sh b/recipes/bioconductor-org.cf.eg.db/post-link.sh
index 1f27db3f27775..06faa06376c83 100644
--- a/recipes/bioconductor-org.cf.eg.db/post-link.sh
+++ b/recipes/bioconductor-org.cf.eg.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "org.cf.eg.db-3.17.0"
+installBiocDataPackage.sh "org.cf.eg.db-3.18.0"
diff --git a/recipes/bioconductor-org.dm.eg.db/meta.yaml b/recipes/bioconductor-org.dm.eg.db/meta.yaml
index b16f5f34268f6..f5b192c04a705 100644
--- a/recipes/bioconductor-org.dm.eg.db/meta.yaml
+++ b/recipes/bioconductor-org.dm.eg.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "org.Dm.eg.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3a680c3ea7320013c7ab1181d11e2177
+  md5: 92577ed3bc5d76b78905169eebfebe7d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-org.dm.eg.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-org.dm.eg.db/post-link.sh b/recipes/bioconductor-org.dm.eg.db/post-link.sh
index e5724e3adb8e1..d0c3e58bb8bf4 100644
--- a/recipes/bioconductor-org.dm.eg.db/post-link.sh
+++ b/recipes/bioconductor-org.dm.eg.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "org.dm.eg.db-3.17.0"
+installBiocDataPackage.sh "org.dm.eg.db-3.18.0"
diff --git a/recipes/bioconductor-org.dr.eg.db/meta.yaml b/recipes/bioconductor-org.dr.eg.db/meta.yaml
index 794990e882fae..38cae1002a138 100644
--- a/recipes/bioconductor-org.dr.eg.db/meta.yaml
+++ b/recipes/bioconductor-org.dr.eg.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "org.Dr.eg.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 03edb42214f27a93743dfc57200cddbb
+  md5: cfea28c45f2f34c675975eacbe861a5f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-org.dr.eg.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-org.dr.eg.db/post-link.sh b/recipes/bioconductor-org.dr.eg.db/post-link.sh
index 565224b42083a..f65f46693b80e 100644
--- a/recipes/bioconductor-org.dr.eg.db/post-link.sh
+++ b/recipes/bioconductor-org.dr.eg.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "org.dr.eg.db-3.17.0"
+installBiocDataPackage.sh "org.dr.eg.db-3.18.0"
diff --git a/recipes/bioconductor-org.eck12.eg.db/meta.yaml b/recipes/bioconductor-org.eck12.eg.db/meta.yaml
index d2bfbf47153ea..496eac6758b52 100644
--- a/recipes/bioconductor-org.eck12.eg.db/meta.yaml
+++ b/recipes/bioconductor-org.eck12.eg.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "org.EcK12.eg.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 676642eb784017bf9f82711274f8987e
+  md5: 50d3d3ca9efec212eae3a920b00750a3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-org.eck12.eg.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-org.eck12.eg.db/post-link.sh b/recipes/bioconductor-org.eck12.eg.db/post-link.sh
index 9d039702bf9a3..ebfed362951d8 100644
--- a/recipes/bioconductor-org.eck12.eg.db/post-link.sh
+++ b/recipes/bioconductor-org.eck12.eg.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "org.eck12.eg.db-3.17.0"
+installBiocDataPackage.sh "org.eck12.eg.db-3.18.0"
diff --git a/recipes/bioconductor-org.ecsakai.eg.db/meta.yaml b/recipes/bioconductor-org.ecsakai.eg.db/meta.yaml
index 40bfe1dfaf5fe..d251c5b30c35e 100644
--- a/recipes/bioconductor-org.ecsakai.eg.db/meta.yaml
+++ b/recipes/bioconductor-org.ecsakai.eg.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "org.EcSakai.eg.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 135a50e2604715a7c5f1c2a36bddf691
+  md5: 3f26ffa55ce30fc8caa64f826207ac61
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-org.ecsakai.eg.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-org.ecsakai.eg.db/post-link.sh b/recipes/bioconductor-org.ecsakai.eg.db/post-link.sh
index 1190bbfee42ac..8ec1c9f68fb4b 100644
--- a/recipes/bioconductor-org.ecsakai.eg.db/post-link.sh
+++ b/recipes/bioconductor-org.ecsakai.eg.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "org.ecsakai.eg.db-3.17.0"
+installBiocDataPackage.sh "org.ecsakai.eg.db-3.18.0"
diff --git a/recipes/bioconductor-org.gg.eg.db/meta.yaml b/recipes/bioconductor-org.gg.eg.db/meta.yaml
index cbb9dabfd6da5..4e11232145408 100644
--- a/recipes/bioconductor-org.gg.eg.db/meta.yaml
+++ b/recipes/bioconductor-org.gg.eg.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "org.Gg.eg.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 292b22ea846c6c184528e92ab4a53247
+  md5: 4ebcbfb0baeee3332a2a07aeae2402a9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-org.gg.eg.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-org.gg.eg.db/post-link.sh b/recipes/bioconductor-org.gg.eg.db/post-link.sh
index 14fb60f9390bb..19ca51f5ad61d 100644
--- a/recipes/bioconductor-org.gg.eg.db/post-link.sh
+++ b/recipes/bioconductor-org.gg.eg.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "org.gg.eg.db-3.17.0"
+installBiocDataPackage.sh "org.gg.eg.db-3.18.0"
diff --git a/recipes/bioconductor-org.hs.eg.db/meta.yaml b/recipes/bioconductor-org.hs.eg.db/meta.yaml
index d2144f7ab5e8c..2aaffdc1eb4a7 100644
--- a/recipes/bioconductor-org.hs.eg.db/meta.yaml
+++ b/recipes/bioconductor-org.hs.eg.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "org.Hs.eg.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a1015fd071ab69055865940ef6e205f4
+  md5: e1f74b9d0c541b5678a0d88f6a8ec847
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-org.hs.eg.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-org.hs.eg.db/post-link.sh b/recipes/bioconductor-org.hs.eg.db/post-link.sh
index 3a9f65c1b9409..88931ccb51392 100644
--- a/recipes/bioconductor-org.hs.eg.db/post-link.sh
+++ b/recipes/bioconductor-org.hs.eg.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "org.hs.eg.db-3.17.0"
+installBiocDataPackage.sh "org.hs.eg.db-3.18.0"
diff --git a/recipes/bioconductor-org.mm.eg.db/meta.yaml b/recipes/bioconductor-org.mm.eg.db/meta.yaml
index 62b1b53e60da6..9d5b8774b3b7a 100644
--- a/recipes/bioconductor-org.mm.eg.db/meta.yaml
+++ b/recipes/bioconductor-org.mm.eg.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "org.Mm.eg.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7b2124d1ef7c0936bb4ecfcbd2a979b8
+  md5: bd95e1ff46f764fff51acc60b249fe95
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-org.mm.eg.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-org.mm.eg.db/post-link.sh b/recipes/bioconductor-org.mm.eg.db/post-link.sh
index 498545f19ed05..ea3b970a24917 100644
--- a/recipes/bioconductor-org.mm.eg.db/post-link.sh
+++ b/recipes/bioconductor-org.mm.eg.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "org.mm.eg.db-3.17.0"
+installBiocDataPackage.sh "org.mm.eg.db-3.18.0"
diff --git a/recipes/bioconductor-org.mmu.eg.db/meta.yaml b/recipes/bioconductor-org.mmu.eg.db/meta.yaml
index 1af50dabafd7f..408a76b274591 100644
--- a/recipes/bioconductor-org.mmu.eg.db/meta.yaml
+++ b/recipes/bioconductor-org.mmu.eg.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "org.Mmu.eg.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d59c3d744ec7def892edacf12c99b869
+  md5: 45a35940d0d1ab91b2b262a8666afa53
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-org.mmu.eg.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-org.mmu.eg.db/post-link.sh b/recipes/bioconductor-org.mmu.eg.db/post-link.sh
index f4810f44dd65f..017b895a9759c 100644
--- a/recipes/bioconductor-org.mmu.eg.db/post-link.sh
+++ b/recipes/bioconductor-org.mmu.eg.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "org.mmu.eg.db-3.17.0"
+installBiocDataPackage.sh "org.mmu.eg.db-3.18.0"
diff --git a/recipes/bioconductor-org.mxanthus.db/meta.yaml b/recipes/bioconductor-org.mxanthus.db/meta.yaml
index f5df60ed94e1b..558a2aefd9d12 100644
--- a/recipes/bioconductor-org.mxanthus.db/meta.yaml
+++ b/recipes/bioconductor-org.mxanthus.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.27" %}
 {% set name = "org.Mxanthus.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,27 +13,28 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: e493814c41401de383b4f6e0f3d39619
 build:
-  number: 8
+  number: 9
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-org.mxanthus.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, RUnit, clusterProfiler, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-org.pt.eg.db/meta.yaml b/recipes/bioconductor-org.pt.eg.db/meta.yaml
index 05faf04d070c0..b98e9dd870761 100644
--- a/recipes/bioconductor-org.pt.eg.db/meta.yaml
+++ b/recipes/bioconductor-org.pt.eg.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "org.Pt.eg.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b3c4135532486951e94ed5d182030217
+  md5: d6672365e68ece6415e2736f40bf096c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-org.pt.eg.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-org.pt.eg.db/post-link.sh b/recipes/bioconductor-org.pt.eg.db/post-link.sh
index 03ab6fa472388..9bcd0492d2c7f 100644
--- a/recipes/bioconductor-org.pt.eg.db/post-link.sh
+++ b/recipes/bioconductor-org.pt.eg.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "org.pt.eg.db-3.17.0"
+installBiocDataPackage.sh "org.pt.eg.db-3.18.0"
diff --git a/recipes/bioconductor-org.rn.eg.db/meta.yaml b/recipes/bioconductor-org.rn.eg.db/meta.yaml
index 670d3c8303da1..aa8ee6cf68f8d 100644
--- a/recipes/bioconductor-org.rn.eg.db/meta.yaml
+++ b/recipes/bioconductor-org.rn.eg.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "org.Rn.eg.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: bf40322d9b95075d75777ec63a797198
+  md5: 1ff92cec0fc2cbd5b3055d1153526ce3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-org.rn.eg.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-org.rn.eg.db/post-link.sh b/recipes/bioconductor-org.rn.eg.db/post-link.sh
index 73d94ea033353..58dd4a7343f2b 100644
--- a/recipes/bioconductor-org.rn.eg.db/post-link.sh
+++ b/recipes/bioconductor-org.rn.eg.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "org.rn.eg.db-3.17.0"
+installBiocDataPackage.sh "org.rn.eg.db-3.18.0"
diff --git a/recipes/bioconductor-org.sc.sgd.db/meta.yaml b/recipes/bioconductor-org.sc.sgd.db/meta.yaml
index f93e10ad3af11..278039220b5c7 100644
--- a/recipes/bioconductor-org.sc.sgd.db/meta.yaml
+++ b/recipes/bioconductor-org.sc.sgd.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "org.Sc.sgd.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b0fd2fcd421007a5b9bd7bc2f5874ae3
+  md5: cd83de7109be623e7a294a47ca65f160
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-org.sc.sgd.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-org.sc.sgd.db/post-link.sh b/recipes/bioconductor-org.sc.sgd.db/post-link.sh
index d98eb50cfefb3..ad3c38e6e585e 100644
--- a/recipes/bioconductor-org.sc.sgd.db/post-link.sh
+++ b/recipes/bioconductor-org.sc.sgd.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "org.sc.sgd.db-3.17.0"
+installBiocDataPackage.sh "org.sc.sgd.db-3.18.0"
diff --git a/recipes/bioconductor-org.ss.eg.db/meta.yaml b/recipes/bioconductor-org.ss.eg.db/meta.yaml
index b016e212ce8c3..6e7b63562d155 100644
--- a/recipes/bioconductor-org.ss.eg.db/meta.yaml
+++ b/recipes/bioconductor-org.ss.eg.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "org.Ss.eg.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a9f8354c9869e86a610ad30f51eb533b
+  md5: f9b32c76d23f9195df7a7eb6529f3340
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-org.ss.eg.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-org.ss.eg.db/post-link.sh b/recipes/bioconductor-org.ss.eg.db/post-link.sh
index b54a6e63afd13..5696d4ac5b715 100644
--- a/recipes/bioconductor-org.ss.eg.db/post-link.sh
+++ b/recipes/bioconductor-org.ss.eg.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "org.ss.eg.db-3.17.0"
+installBiocDataPackage.sh "org.ss.eg.db-3.18.0"
diff --git a/recipes/bioconductor-org.xl.eg.db/meta.yaml b/recipes/bioconductor-org.xl.eg.db/meta.yaml
index 70fb5c04244ff..48b5a78fe55b9 100644
--- a/recipes/bioconductor-org.xl.eg.db/meta.yaml
+++ b/recipes/bioconductor-org.xl.eg.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "org.Xl.eg.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6ce9e0dc3566a220f5c12b70ffb2538c
+  md5: bbea76a4373d8b51048029b83c591aca
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-org.xl.eg.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-org.xl.eg.db/post-link.sh b/recipes/bioconductor-org.xl.eg.db/post-link.sh
index f6af33a8d689b..d079ec990a1cf 100644
--- a/recipes/bioconductor-org.xl.eg.db/post-link.sh
+++ b/recipes/bioconductor-org.xl.eg.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "org.xl.eg.db-3.17.0"
+installBiocDataPackage.sh "org.xl.eg.db-3.18.0"
diff --git a/recipes/bioconductor-organism.dplyr/meta.yaml b/recipes/bioconductor-organism.dplyr/meta.yaml
index c3360180e94ae..2ccba681f13c0 100644
--- a/recipes/bioconductor-organism.dplyr/meta.yaml
+++ b/recipes/bioconductor-organism.dplyr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.1" %}
 {% set name = "Organism.dplyr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d89fd354e720e5b09282fa271367efe3
+  md5: b16c25c3ee5abafa1007a9c7bd731801
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-organism.dplyr", max_pin="x.x") }}'
   noarch: generic
-# Suggests: org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene, org.Mm.eg.db, TxDb.Mmusculus.UCSC.mm10.ensGene, testthat, knitr, rmarkdown, BiocStyle, ggplot2
+# Suggests: org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene, org.Mm.eg.db, TxDb.Mmusculus.UCSC.mm10.ensGene, testthat, knitr, rmarkdown, magick, BiocStyle, ggplot2
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dbi
     - r-dbplyr
@@ -37,14 +38,14 @@ requirements:
     - r-rsqlite
     - r-tibble
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dbi
     - r-dbplyr
diff --git a/recipes/bioconductor-organismdbi/meta.yaml b/recipes/bioconductor-organismdbi/meta.yaml
index 7e0477602eab8..3424eb8e53508 100644
--- a/recipes/bioconductor-organismdbi/meta.yaml
+++ b/recipes/bioconductor-organismdbi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "OrganismDbi" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,38 +11,39 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4b63d172cafa48c26622cff0fa0a338a
+  md5: 3d6c3ba042e4e0b6ecf5fa27fc344a82
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-organismdbi", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Homo.sapiens, Rattus.norvegicus, BSgenome.Hsapiens.UCSC.hg19, AnnotationHub, FDb.UCSC.tRNAs, mirbase.db, rtracklayer, biomaRt, RUnit, RMariaDB, BiocStyle, knitr
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-biocmanager
     - r-dbi
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-biocmanager
     - r-dbi
diff --git a/recipes/bioconductor-orthogene/meta.yaml b/recipes/bioconductor-orthogene/meta.yaml
index 6856abd424938..5fb52c90803da 100644
--- a/recipes/bioconductor-orthogene/meta.yaml
+++ b/recipes/bioconductor-orthogene/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "orthogene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: e4dcc64a91b436e77b287eb1c94ed801
+  md5: f3597fa7ce02e2e32ee6cebb20f67c08
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-orthogene", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rworkflows, remotes, knitr, BiocStyle, markdown, rmarkdown, testthat (>= 3.0.0), piggyback, magick, GenomeInfoDbData, ape, phytools, rphylopic (>= 1.0.0), TreeTools, ggimage, OmaDB
 requirements:
   host:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
     - r-babelgene
     - r-base
     - r-data.table
@@ -37,8 +38,8 @@ requirements:
     - r-patchwork
     - r-repmis
   run:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
     - r-babelgene
     - r-base
     - r-data.table
diff --git a/recipes/bioconductor-orthology.eg.db/meta.yaml b/recipes/bioconductor-orthology.eg.db/meta.yaml
index c01f01405c677..b4bceecfb8d50 100644
--- a/recipes/bioconductor-orthology.eg.db/meta.yaml
+++ b/recipes/bioconductor-orthology.eg.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "Orthology.eg.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 90c181057a638413afc54bb11071a42e
+  md5: 1e53a6a144a5074544cbe166ad241012
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-orthology.eg.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-orthology.eg.db/post-link.sh b/recipes/bioconductor-orthology.eg.db/post-link.sh
index 9de63532c30a8..62dc891778772 100644
--- a/recipes/bioconductor-orthology.eg.db/post-link.sh
+++ b/recipes/bioconductor-orthology.eg.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "orthology.eg.db-3.17.0"
+installBiocDataPackage.sh "orthology.eg.db-3.18.0"
diff --git a/recipes/bioconductor-orthos/build.sh b/recipes/bioconductor-orthos/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-orthos/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-orthos/meta.yaml b/recipes/bioconductor-orthos/meta.yaml
new file mode 100644
index 0000000000000..638a68a53caf2
--- /dev/null
+++ b/recipes/bioconductor-orthos/meta.yaml
@@ -0,0 +1,81 @@
+{% set version = "1.0.1" %}
+{% set name = "orthos" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
+  md5: c35d515c0e956e4207b00db662192707
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-orthos", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocManager, BiocStyle, htmltools, knitr, rmarkdown, testthat (>= 3.0.0)
+requirements:
+  host:
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-orthosdata >=1.0.0,<1.1.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-colorspace
+    - r-cowplot
+    - r-dplyr
+    - r-ggplot2
+    - r-ggpubr
+    - r-ggrepel
+    - r-ggsci
+    - r-keras
+    - r-plyr
+    - r-reticulate
+    - r-rlang
+    - r-tensorflow
+    - r-tidyr
+  run:
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-orthosdata >=1.0.0,<1.1.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-colorspace
+    - r-cowplot
+    - r-dplyr
+    - r-ggplot2
+    - r-ggpubr
+    - r-ggrepel
+    - r-ggsci
+    - r-keras
+    - r-plyr
+    - r-reticulate
+    - r-rlang
+    - r-tensorflow
+    - r-tidyr
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'MIT + file LICENSE'
+  summary: '`orthos` is an R package for variance decomposition using conditional variational auto-encoders'
+  description: '`orthos` decomposes RNA-seq contrasts, for example obtained from a gene knock-out or compound treatment experiment, into unspecific and experiment-specific components. Original and decomposed contrasts can be efficiently queried against a large database of contrasts (derived from ARCHS4, https://maayanlab.cloud/archs4/) to identify similar experiments. `orthos` furthermore provides plotting functions to visualize the results of such a search for similar contrasts.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-orthosdata/meta.yaml b/recipes/bioconductor-orthosdata/meta.yaml
new file mode 100644
index 0000000000000..8aca3fc0ed845
--- /dev/null
+++ b/recipes/bioconductor-orthosdata/meta.yaml
@@ -0,0 +1,51 @@
+{% set version = "1.0.0" %}
+{% set name = "orthosData" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 7970587455fa5197daf1f6b640b7f688
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-orthosdata", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, ggplot2, knitr, rmarkdown, testthat
+requirements:
+  host:
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-stringr
+  run:
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-stringr
+    - curl
+    - 'bioconductor-data-packages >=20231203'
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/html/{{ name }}.html'
+  license: 'MIT + file LICENSE'
+  summary: 'Data for the orthos package'
+  description: '`orthosData` is the companion ExperimentData package to the `orthos` R package for mechanistic studies using differential gene expression experiments. It provides functions for retrieval from ExperimentHub and local caching of the models and datasets used internally in orthos.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-orthosdata/post-link.sh b/recipes/bioconductor-orthosdata/post-link.sh
new file mode 100644
index 0000000000000..5c3cfd2f32ffc
--- /dev/null
+++ b/recipes/bioconductor-orthosdata/post-link.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+installBiocDataPackage.sh "orthosdata-1.0.0"
diff --git a/recipes/bioconductor-orthosdata/pre-unlink.sh b/recipes/bioconductor-orthosdata/pre-unlink.sh
new file mode 100644
index 0000000000000..78d90840ebfb5
--- /dev/null
+++ b/recipes/bioconductor-orthosdata/pre-unlink.sh
@@ -0,0 +1 @@
+R CMD REMOVE --library=$PREFIX/lib/R/library/ orthosData
diff --git a/recipes/bioconductor-osat/meta.yaml b/recipes/bioconductor-osat/meta.yaml
index a41d9a8ef09cc..8b31b07c069f0 100644
--- a/recipes/bioconductor-osat/meta.yaml
+++ b/recipes/bioconductor-osat/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "OSAT" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 41b946e0e889d7756364cff5f9a3386e
+  md5: 64bba183cfa8a211960d891cb5ee3ddb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-osat", max_pin="x.x") }}'
   noarch: generic
 # Suggests: xtable, Biobase
 requirements:
diff --git a/recipes/bioconductor-oscope/meta.yaml b/recipes/bioconductor-oscope/meta.yaml
index a5f1f62cfab43..d854e94085c0f 100644
--- a/recipes/bioconductor-oscope/meta.yaml
+++ b/recipes/bioconductor-oscope/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "Oscope" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1fdee060dfcb4bd73e1e89a377abe73e
+  md5: 96a8fc6730b6d493d352d74032c4b3d3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-oscope", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-ebseq >=1.40.0,<1.41.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-ebseq >=2.0.0,<2.1.0'
     - r-base
     - r-cluster
     - r-testthat
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-ebseq >=1.40.0,<1.41.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-ebseq >=2.0.0,<2.1.0'
     - r-base
     - r-cluster
     - r-testthat
diff --git a/recipes/bioconductor-otubase/meta.yaml b/recipes/bioconductor-otubase/meta.yaml
index d46aa09d35d25..b6a36eb811848 100644
--- a/recipes/bioconductor-otubase/meta.yaml
+++ b/recipes/bioconductor-otubase/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.50.0" %}
+{% set version = "1.52.0" %}
 {% set name = "OTUbase" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0ff077bed280afa9c1460747ad4bb96b
+  md5: 612c0f07995eb5cc0f753eb6750e5216
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-otubase", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - r-vegan
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - r-vegan
 test:
@@ -51,4 +52,3 @@ extra:
     name: bioconductor-otubase
     path: recipes/bioconductor-otubase
     version: 1.30.0
-
diff --git a/recipes/bioconductor-outrider/meta.yaml b/recipes/bioconductor-outrider/meta.yaml
index 1a290b5564a2c..84fc0e04082f1 100644
--- a/recipes/bioconductor-outrider/meta.yaml
+++ b/recipes/bioconductor-outrider/meta.yaml
@@ -1,39 +1,42 @@
-{% set version = "1.18.1" %}
+{% set version = "1.20.1" %}
 {% set name = "OUTRIDER" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
   version: '{{ version }}'
 source:
   url:
+    - 'https://github.com/gagneurlab/{{ name }}/archive/refs/tags/{{ version }}.tar.gz'
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0e41d4122f3ed2b2b7fbc9e73d0f5341
+  md5: 6406872685b1e9b329c55d07fc82237b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-outrider", max_pin="x.x") }}'
 # Suggests: testthat, knitr, rmarkdown, BiocStyle, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, RMariaDB, AnnotationDbi, beeswarm, covr
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bbmisc
     - r-data.table
     - r-generics
     - r-ggplot2
+    - r-ggrepel
     - r-heatmaply
     - r-matrixstats
     - r-pheatmap
@@ -48,20 +51,21 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bbmisc
     - r-data.table
     - r-generics
     - r-ggplot2
+    - r-ggrepel
     - r-heatmaply
     - r-matrixstats
     - r-pheatmap
diff --git a/recipes/bioconductor-outsplice/meta.yaml b/recipes/bioconductor-outsplice/meta.yaml
index b8d74daa973f8..88b5efe5ba59d 100644
--- a/recipes/bioconductor-outsplice/meta.yaml
+++ b/recipes/bioconductor-outsplice/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "OutSplice" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 216bb720d2a43d5d264f25733e0dd546
+  md5: 7a55735983a79681a2bbcd567c9f0c53
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-outsplice", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-repitools >=1.46.0,<1.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-repitools >=1.48.0,<1.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.17.0,<3.18.0'
+    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-repitools >=1.46.0,<1.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-repitools >=1.48.0,<1.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.17.0,<3.18.0'
+    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.18.0,<3.19.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-oveseg/meta.yaml b/recipes/bioconductor-oveseg/meta.yaml
index 6334a2389e884..9f062d2d0697a 100644
--- a/recipes/bioconductor-oveseg/meta.yaml
+++ b/recipes/bioconductor-oveseg/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "OVESEG" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3cc11546cd7fdf569be32319bbac34b4
+  md5: 2a1ac203dcd19e6c511d4bcefa0cee45
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-oveseg", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, BiocStyle, testthat, ggplot2, gridExtra, grid, reshape2, scales
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-fdrtool
     - r-rcpp
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-fdrtool
     - r-rcpp
diff --git a/recipes/bioconductor-paa/meta.yaml b/recipes/bioconductor-paa/meta.yaml
index 7c378000470d1..e433b71cba99c 100644
--- a/recipes/bioconductor-paa/meta.yaml
+++ b/recipes/bioconductor-paa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "PAA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4be8a4102d0386d6a8ef5e446e538bd7
+  md5: 4968ea3bfbaa5edd0e6d00dcbe93a6d0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-paa", max_pin="x.x") }}'
 # Suggests: BiocStyle, RUnit, BiocGenerics, vsn
 # SystemRequirements: C++ software package Random Jungle
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-e1071
     - r-gplots
@@ -35,8 +36,8 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-e1071
     - r-gplots
diff --git a/recipes/bioconductor-packfinder/meta.yaml b/recipes/bioconductor-packfinder/meta.yaml
index e097de4cffde0..f973e5d16efa5 100644
--- a/recipes/bioconductor-packfinder/meta.yaml
+++ b/recipes/bioconductor-packfinder/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "packFinder" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c1b5c25374c50cdd102cea61cf7739ce
+  md5: 8c2f41158644b4d04136910e0ce39af8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-packfinder", max_pin="x.x") }}'
   noarch: generic
 # Suggests: biomartr, knitr, rmarkdown, testthat, dendextend, biocViews, BiocCheck, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-ape
     - r-base
     - r-kmer
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-ape
     - r-base
     - r-kmer
diff --git a/recipes/bioconductor-padma/meta.yaml b/recipes/bioconductor-padma/meta.yaml
index a2324e45cd0db..b61afc3f54526 100644
--- a/recipes/bioconductor-padma/meta.yaml
+++ b/recipes/bioconductor-padma/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "padma" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f47e277f616547846880f0f924f63e66
+  md5: 126a8aec3057f8ccc5a435c5435adfc0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-padma", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle, knitr, rmarkdown, KEGGREST, missMDA, ggplot2, ggrepel, car, cowplot
 requirements:
   host:
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-factominer
   run:
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-factominer
 test:
diff --git a/recipes/bioconductor-padog/meta.yaml b/recipes/bioconductor-padog/meta.yaml
index 9351472072933..a248a46b7416c 100644
--- a/recipes/bioconductor-padog/meta.yaml
+++ b/recipes/bioconductor-padog/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "PADOG" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2791538f9d0ad24c3373a42e750db060
+  md5: ca2c1e477f0ef2d2be1eaf52570dd8c4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-padog", max_pin="x.x") }}'
   noarch: generic
 # Suggests: doParallel, parallel
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - 'bioconductor-hgu133a.db >=3.13.0,<3.14.0'
     - 'bioconductor-hgu133plus2.db >=3.13.0,<3.14.0'
-    - 'bioconductor-keggdzpathwaysgeo >=1.38.0,<1.39.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-keggdzpathwaysgeo >=1.40.0,<1.41.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-dorng
     - r-foreach
     - r-gsa
     - r-nlme
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - 'bioconductor-hgu133a.db >=3.13.0,<3.14.0'
     - 'bioconductor-hgu133plus2.db >=3.13.0,<3.14.0'
-    - 'bioconductor-keggdzpathwaysgeo >=1.38.0,<1.39.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-keggdzpathwaysgeo >=1.40.0,<1.41.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-dorng
     - r-foreach
diff --git a/recipes/bioconductor-paeg1acdf/meta.yaml b/recipes/bioconductor-paeg1acdf/meta.yaml
index f318eb8326b9d..83f68341ac443 100644
--- a/recipes/bioconductor-paeg1acdf/meta.yaml
+++ b/recipes/bioconductor-paeg1acdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "paeg1acdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 73af974112051db0f715518393e84726
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-paeg1acdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-paeg1aprobe/meta.yaml b/recipes/bioconductor-paeg1aprobe/meta.yaml
index a274b700708aa..52fa2ca8579b2 100644
--- a/recipes/bioconductor-paeg1aprobe/meta.yaml
+++ b/recipes/bioconductor-paeg1aprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "paeg1aprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 493fa1fc7b92a78c8114b65038113c42
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-paeg1aprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pagerank/meta.yaml b/recipes/bioconductor-pagerank/meta.yaml
index 88a28aebda42f..fadcf0f1bd68e 100644
--- a/recipes/bioconductor-pagerank/meta.yaml
+++ b/recipes/bioconductor-pagerank/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "pageRank" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 95bbea12ddfe8b6f3e526c78defd4eaf
+  md5: 05578860ad3f7021d25c6c07953218ea
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pagerank", max_pin="x.x") }}'
   noarch: generic
 # Suggests: bcellViper, BSgenome.Hsapiens.UCSC.hg19, JASPAR2018, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, TFBSTools, GenomicFeatures, annotate
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-motifmatchr >=1.22.0,<1.23.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-motifmatchr >=1.24.0,<1.25.0'
     - r-base
     - r-igraph
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-motifmatchr >=1.22.0,<1.23.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-motifmatchr >=1.24.0,<1.25.0'
     - r-base
     - r-igraph
 test:
diff --git a/recipes/bioconductor-pairadise/meta.yaml b/recipes/bioconductor-pairadise/meta.yaml
index 076065bb143ad..da305a20a0c68 100644
--- a/recipes/bioconductor-pairadise/meta.yaml
+++ b/recipes/bioconductor-pairadise/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "PAIRADISE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a974fbe1fda2aafd380d6faac180347a
+  md5: 2a3889d2380363b7a9b0ee3c75ef0891
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pairadise", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-abind
     - r-base
     - r-nloptr
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-abind
     - r-base
     - r-nloptr
diff --git a/recipes/bioconductor-paircompviz/meta.yaml b/recipes/bioconductor-paircompviz/meta.yaml
index 242d9a92a6680..1a78dfad94d52 100644
--- a/recipes/bioconductor-paircompviz/meta.yaml
+++ b/recipes/bioconductor-paircompviz/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "paircompviz" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: eca876e3442dd83dc7e355080a6e5af6
+  md5: e9c57c7305e15062d9258019fed12f3e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-paircompviz", max_pin="x.x") }}'
   noarch: generic
 # Suggests: multcomp, reshape, rpart, plyr, xtable
 requirements:
   host:
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
   run:
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-pairedgsea/meta.yaml b/recipes/bioconductor-pairedgsea/meta.yaml
index 31d687a75a195..f5f6ebb5140ba 100644
--- a/recipes/bioconductor-pairedgsea/meta.yaml
+++ b/recipes/bioconductor-pairedgsea/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "pairedGSEA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f8f47e26a85154c5df37d0729db4c24d
+  md5: 591cbbc31b4eab5064ef39c4b8133fa5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pairedgsea", max_pin="x.x") }}'
   noarch: generic
 # Suggests: writexl, readxl, readr, rhdf5, msigdbr, plotly, testthat (>= 3.0.0), knitr, rmarkdown, covr, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-dexseq >=1.46.0,<1.47.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-dexseq >=1.48.0,<1.49.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-aggregation
     - r-base
     - r-ggplot2
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-dexseq >=1.46.0,<1.47.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-dexseq >=1.48.0,<1.49.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-aggregation
     - r-base
     - r-ggplot2
diff --git a/recipes/bioconductor-pairkat/meta.yaml b/recipes/bioconductor-pairkat/meta.yaml
index 8bdd341e56c06..88e9611ce00c4 100644
--- a/recipes/bioconductor-pairkat/meta.yaml
+++ b/recipes/bioconductor-pairkat/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "pairkat" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 548c23a7fea8eec39dc6fd06b283ec76
+  md5: 030b0f4ea6e9f71adf6769ca9b16cae0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pairkat", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, knitr, BiocStyle, dplyr
 requirements:
   host:
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-compquadform
     - r-data.table
@@ -30,8 +31,8 @@ requirements:
     - r-magrittr
     - r-tibble
   run:
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-compquadform
     - r-data.table
diff --git a/recipes/bioconductor-pandar/meta.yaml b/recipes/bioconductor-pandar/meta.yaml
index 66cf2a539d820..b750dee69940d 100644
--- a/recipes/bioconductor-pandar/meta.yaml
+++ b/recipes/bioconductor-pandar/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "pandaR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: eae276fe37e113e2e860952b2004645c
+  md5: 203422d8a9df096677530f57bffe9e9c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pandar", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-ggplot2
     - r-hexbin
@@ -32,8 +33,8 @@ requirements:
     - r-reshape
     - r-runit
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-ggplot2
     - r-hexbin
diff --git a/recipes/bioconductor-panelcn.mops/meta.yaml b/recipes/bioconductor-panelcn.mops/meta.yaml
index d436c6ae205e2..a1f76cb47c1ad 100644
--- a/recipes/bioconductor-panelcn.mops/meta.yaml
+++ b/recipes/bioconductor-panelcn.mops/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "panelcn.mops" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: a9626de33823bb9f8a22e83136a5ade8
+  md5: c40de00a870c4b693e6312b7d2110b96
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-panelcn.mops", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-cn.mops >=1.46.0,<1.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-cn.mops >=1.48.0,<1.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-cn.mops >=1.46.0,<1.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-cn.mops >=1.48.0,<1.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-panomir/meta.yaml b/recipes/bioconductor-panomir/meta.yaml
index ca9c1e393db04..0ded484f43400 100644
--- a/recipes/bioconductor-panomir/meta.yaml
+++ b/recipes/bioconductor-panomir/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "PanomiR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3aa1e186fd1ce598777d57f08c4e00e9
+  md5: a8f96cdc267551107e69e8cb260a05c0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-panomir", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-dplyr
     - r-forcats
@@ -36,11 +37,11 @@ requirements:
     - r-tibble
     - r-withr
   run:
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-base
     - r-dplyr
     - r-forcats
diff --git a/recipes/bioconductor-panp/meta.yaml b/recipes/bioconductor-panp/meta.yaml
index cbfbb7effa540..88b59b7b344ae 100644
--- a/recipes/bioconductor-panp/meta.yaml
+++ b/recipes/bioconductor-panp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.70.0" %}
+{% set version = "1.72.0" %}
 {% set name = "panp" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f0193664c739a413e0bc97960f3e859d
+  md5: 1cc532873dbc4e2cde6c04ca995545db
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-panp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: gcrma
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-panr/meta.yaml b/recipes/bioconductor-panr/meta.yaml
index d4f06ff44235b..5a1a71d18d317 100644
--- a/recipes/bioconductor-panr/meta.yaml
+++ b/recipes/bioconductor-panr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "PANR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a76063c60e0a92870203aa9b907281e1
+  md5: accc5472b6656e95d885960d9f1ecee3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-panr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: snow
 requirements:
   host:
-    - 'bioconductor-reder >=2.4.0,<2.5.0'
+    - 'bioconductor-reder >=2.6.0,<2.7.0'
     - r-base
     - r-igraph
     - r-mass
     - r-pvclust
   run:
-    - 'bioconductor-reder >=2.4.0,<2.5.0'
+    - 'bioconductor-reder >=2.6.0,<2.7.0'
     - r-base
     - r-igraph
     - r-mass
diff --git a/recipes/bioconductor-panther.db/meta.yaml b/recipes/bioconductor-panther.db/meta.yaml
index 9d0ca87b10175..9f4277d05f21e 100644
--- a/recipes/bioconductor-panther.db/meta.yaml
+++ b/recipes/bioconductor-panther.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.11" %}
+{% set version = "1.0.12" %}
 {% set name = "PANTHER.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 561f6b164b27f6dc4287f0d7fd6bb8b3
+  md5: edafd1c94f2f1cf3975f525fae7a9b83
 build:
-  number: 4
+  number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-panther.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit,knitr,BiocStyle,rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
     - r-base
     - r-rsqlite
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
     - r-base
     - r-rsqlite
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-panther.db/post-link.sh b/recipes/bioconductor-panther.db/post-link.sh
index b4e3a5abb373c..6801e59a4e786 100644
--- a/recipes/bioconductor-panther.db/post-link.sh
+++ b/recipes/bioconductor-panther.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "panther.db-1.0.11"
+installBiocDataPackage.sh "panther.db-1.0.12"
diff --git a/recipes/bioconductor-panviz/meta.yaml b/recipes/bioconductor-panviz/meta.yaml
index 6720e043d4792..96a8028875a67 100644
--- a/recipes/bioconductor-panviz/meta.yaml
+++ b/recipes/bioconductor-panviz/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "PanViz" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a17196e1176705982077a84a995f6340
+  md5: 5d5ced4ee7d68f57367aed30633f29e0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-panviz", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown, networkD3,
 requirements:
diff --git a/recipes/bioconductor-parathyroidse/meta.yaml b/recipes/bioconductor-parathyroidse/meta.yaml
index afd868a5c35f1..a43c027d7671f 100644
--- a/recipes/bioconductor-parathyroidse/meta.yaml
+++ b/recipes/bioconductor-parathyroidse/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "parathyroidSE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 055bda4d4376fcdec3bce484ec634117
+  md5: e4d06f888feb4015273e20b14f8ee37a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-parathyroidse", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Rsamtools, GenomicAlignments, GEOquery, SRAdb, GenomicFeatures, BiocStyle
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-parathyroidse/post-link.sh b/recipes/bioconductor-parathyroidse/post-link.sh
index 0216c73790017..170c351577c93 100644
--- a/recipes/bioconductor-parathyroidse/post-link.sh
+++ b/recipes/bioconductor-parathyroidse/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "parathyroidse-1.38.0"
+installBiocDataPackage.sh "parathyroidse-1.40.0"
diff --git a/recipes/bioconductor-pareg/build.sh b/recipes/bioconductor-pareg/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-pareg/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-pareg/meta.yaml b/recipes/bioconductor-pareg/meta.yaml
new file mode 100644
index 0000000000000..b98c62126d92e
--- /dev/null
+++ b/recipes/bioconductor-pareg/meta.yaml
@@ -0,0 +1,97 @@
+{% set version = "1.6.0" %}
+{% set name = "pareg" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
+  md5: fef96a7ed5d753b6729186f4870f4283
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pareg", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: knitr, rmarkdown, testthat (>= 2.1.0), BiocStyle, formatR, plotROC, PRROC, mgsa, topGO, msigdbr, betareg, fgsea, ComplexHeatmap, GGally, ggsignif, circlize, enrichplot, ggnewscale, tidyverse, cowplot, ggfittext, simplifyEnrichment, GSEABenchmarkeR, BiocParallel, ggupset, latex2exp, org.Hs.eg.db, GO.db
+requirements:
+  host:
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - r-base
+    - r-devtools
+    - r-dofuture
+    - r-dorng
+    - r-dplyr
+    - r-foreach
+    - r-future
+    - r-ggplot2
+    - r-ggraph
+    - r-ggrepel
+    - r-glue
+    - r-hms
+    - r-igraph
+    - r-keras
+    - r-logger
+    - r-magrittr
+    - r-matrix
+    - r-nloptr
+    - r-progress
+    - r-proxy
+    - r-purrr
+    - r-reticulate
+    - r-rlang
+    - r-stringr
+    - 'r-tensorflow >=2.2.0'
+    - 'r-tfprobability >=0.10.0'
+    - r-tibble
+    - r-tidygraph
+    - r-tidyr
+  run:
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - r-base
+    - r-devtools
+    - r-dofuture
+    - r-dorng
+    - r-dplyr
+    - r-foreach
+    - r-future
+    - r-ggplot2
+    - r-ggraph
+    - r-ggrepel
+    - r-glue
+    - r-hms
+    - r-igraph
+    - r-keras
+    - r-logger
+    - r-magrittr
+    - r-matrix
+    - r-nloptr
+    - r-progress
+    - r-proxy
+    - r-purrr
+    - r-reticulate
+    - r-rlang
+    - r-stringr
+    - 'r-tensorflow >=2.2.0'
+    - 'r-tfprobability >=0.10.0'
+    - r-tibble
+    - r-tidygraph
+    - r-tidyr
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'Pathway enrichment using a regularized regression approach'
+  description: 'Compute pathway enrichment scores while accounting for term-term relations. This package uses a regularized multiple linear regression to regress differential expression p-values obtained from multi-condition experiments on a pathway membership matrix. By doing so, it is able to incorporate additional biological knowledge into the enrichment analysis and to estimate pathway enrichment scores more robustly.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-parglms/meta.yaml b/recipes/bioconductor-parglms/meta.yaml
index 72f49afd8f4d5..ddeebc825c183 100644
--- a/recipes/bioconductor-parglms/meta.yaml
+++ b/recipes/bioconductor-parglms/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "parglms" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 0e74c1ca871ba837fb9329207a55c3e4
+  md5: 0d6a2dc756389064b9be38e755e1a24b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-parglms", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, sandwich, MASS, knitr, GenomeInfoDb, GenomicRanges, gwascat, BiocStyle, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-batchjobs
     - r-doparallel
     - r-foreach
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-batchjobs
     - r-doparallel
diff --git a/recipes/bioconductor-parody/meta.yaml b/recipes/bioconductor-parody/meta.yaml
index 87ce03a669d80..c39b7ed701f61 100644
--- a/recipes/bioconductor-parody/meta.yaml
+++ b/recipes/bioconductor-parody/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.58.0" %}
+{% set version = "1.60.0" %}
 {% set name = "parody" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: e329e9fd1626c3d05bd1f2cf7208f5cf
+  md5: b466cc7b30f33e1854daac921ec9dc87
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-parody", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, testthat, rmarkdown
 requirements:
diff --git a/recipes/bioconductor-partcnv/build.sh b/recipes/bioconductor-partcnv/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-partcnv/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-partcnv/meta.yaml b/recipes/bioconductor-partcnv/meta.yaml
new file mode 100644
index 0000000000000..b464c8fbd145d
--- /dev/null
+++ b/recipes/bioconductor-partcnv/meta.yaml
@@ -0,0 +1,51 @@
+{% set version = "1.0.0" %}
+{% set name = "partCNV" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: e004f2129cbb1fe1e84e33cf223c06f6
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-partcnv", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, rmarkdown, knitr, IRanges, testthat (>= 3.0.0)
+requirements:
+  host:
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - r-base
+    - r-data.table
+    - r-depmixs4
+    - r-magrittr
+    - r-seurat
+  run:
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - r-base
+    - r-data.table
+    - r-depmixs4
+    - r-magrittr
+    - r-seurat
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-2
+  summary: 'Infer locally aneuploid cells using single cell RNA-seq data'
+  description: 'This package uses a statistical framework for rapid and accurate detection of aneuploid cells with local copy number deletion or amplification. Our method uses an EM algorithm with mixtures of Poisson distributions while incorporating cytogenetics information (e.g., regional deletion or amplification) to guide the classification (partCNV). When applicable, we further improve the accuracy by integrating a Hidden Markov Model for feature selection (partCNVH).'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2'
+
diff --git a/recipes/bioconductor-partheenmetadata.db/meta.yaml b/recipes/bioconductor-partheenmetadata.db/meta.yaml
index 6da9a7770c14e..174c5d3e8a5fe 100644
--- a/recipes/bioconductor-partheenmetadata.db/meta.yaml
+++ b/recipes/bioconductor-partheenmetadata.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "PartheenMetaData.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 1c9fd27e13a341b9aba9a235a67ce978
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-partheenmetadata.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pasilla/meta.yaml b/recipes/bioconductor-pasilla/meta.yaml
index d1e60b9363b9a..cbe7571ac3d4a 100644
--- a/recipes/bioconductor-pasilla/meta.yaml
+++ b/recipes/bioconductor-pasilla/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "pasilla" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: a6abc62e6e4ddde42ee0269256ac8342
+  md5: e1fbdd57136d8a29edd1e0164dc2412e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pasilla", max_pin="x.x") }}'
   noarch: generic
-# Suggests: rmarkdown, BiocStyle, knitr
+# Suggests: rmarkdown, BiocStyle, knitr, roxygen2
 requirements:
   host:
-    - 'bioconductor-dexseq >=1.46.0,<1.47.0'
+    - 'bioconductor-dexseq >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-dexseq >=1.46.0,<1.47.0'
+    - 'bioconductor-dexseq >=1.48.0,<1.49.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pasilla/post-link.sh b/recipes/bioconductor-pasilla/post-link.sh
index 409a42d31ba3b..d7bfc5e712bc6 100644
--- a/recipes/bioconductor-pasilla/post-link.sh
+++ b/recipes/bioconductor-pasilla/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "pasilla-1.28.0"
+installBiocDataPackage.sh "pasilla-1.30.0"
diff --git a/recipes/bioconductor-pasillabamsubset/meta.yaml b/recipes/bioconductor-pasillabamsubset/meta.yaml
index 1d6f3c2d878d3..a7095742aa73c 100644
--- a/recipes/bioconductor-pasillabamsubset/meta.yaml
+++ b/recipes/bioconductor-pasillabamsubset/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.38.0" %}
+{% set version = "0.40.0" %}
 {% set name = "pasillaBamSubset" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6c80a6afcfb87c88e88e8c3c69e66e71
+  md5: 8fd05eac2d37650e157871908cbaf306
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pasillabamsubset", max_pin="x.x") }}'
   noarch: generic
 # Suggests: pasilla
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pasillabamsubset/post-link.sh b/recipes/bioconductor-pasillabamsubset/post-link.sh
index 70c9fa4bf3d2e..6e8d22f6eff32 100644
--- a/recipes/bioconductor-pasillabamsubset/post-link.sh
+++ b/recipes/bioconductor-pasillabamsubset/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "pasillabamsubset-0.38.0"
+installBiocDataPackage.sh "pasillabamsubset-0.40.0"
diff --git a/recipes/bioconductor-pasillatranscriptexpr/meta.yaml b/recipes/bioconductor-pasillatranscriptexpr/meta.yaml
index 28e7132908a6c..befc4ad24b21e 100644
--- a/recipes/bioconductor-pasillatranscriptexpr/meta.yaml
+++ b/recipes/bioconductor-pasillatranscriptexpr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "PasillaTranscriptExpr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8d5e8ec6f9ba14ca8da1565b8a2b0bac
+  md5: 7d1d8c852fff7d80c11e8ab79dae7487
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pasillatranscriptexpr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rtracklayer, BiocStyle, knitr, testthat
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pasillatranscriptexpr/post-link.sh b/recipes/bioconductor-pasillatranscriptexpr/post-link.sh
index 8d9070d95d4c1..4bb80603c4361 100644
--- a/recipes/bioconductor-pasillatranscriptexpr/post-link.sh
+++ b/recipes/bioconductor-pasillatranscriptexpr/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "pasillatranscriptexpr-1.28.0"
+installBiocDataPackage.sh "pasillatranscriptexpr-1.30.0"
diff --git a/recipes/bioconductor-past/meta.yaml b/recipes/bioconductor-past/meta.yaml
index 519ae97444a6b..a2f50e875b09f 100644
--- a/recipes/bioconductor-past/meta.yaml
+++ b/recipes/bioconductor-past/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "PAST" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 56e17729beeb8a5cbbed7c1a4bdce03a
+  md5: 9af26fa0c8f74a586f23905b9b2408c3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-past", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-doparallel
     - r-dplyr
@@ -33,10 +34,10 @@ requirements:
     - r-iterators
     - r-rlang
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-doparallel
     - r-dplyr
diff --git a/recipes/bioconductor-path2ppi/meta.yaml b/recipes/bioconductor-path2ppi/meta.yaml
index 165179a2c5498..0153df53f02fd 100644
--- a/recipes/bioconductor-path2ppi/meta.yaml
+++ b/recipes/bioconductor-path2ppi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "Path2PPI" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 98206bf5ffb337ead19023c0370d1abd
+  md5: 4fcd4d73b05e2167ecdfb79aadfe8722
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-path2ppi", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, RUnit, BiocGenerics, BiocStyle
 requirements:
diff --git a/recipes/bioconductor-pathifier/meta.yaml b/recipes/bioconductor-pathifier/meta.yaml
index 6d2ce71cd171d..818306e1cb392 100644
--- a/recipes/bioconductor-pathifier/meta.yaml
+++ b/recipes/bioconductor-pathifier/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "pathifier" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: ec39c0e53442653e330922de4718ebde
+  md5: 344576d367c4da46c28918be3de3f65e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pathifier", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-pathnet/meta.yaml b/recipes/bioconductor-pathnet/meta.yaml
index cfc4a76e93bd0..a65c695e30d6d 100644
--- a/recipes/bioconductor-pathnet/meta.yaml
+++ b/recipes/bioconductor-pathnet/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "PathNet" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 34979e84ad0538dcde4f4651440e271c
+  md5: 13ca247b602840ebfaea9f1e9a5839aa
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pathnet", max_pin="x.x") }}'
   noarch: generic
 # Suggests: PathNetData, RUnit, BiocGenerics
 requirements:
diff --git a/recipes/bioconductor-pathnetdata/meta.yaml b/recipes/bioconductor-pathnetdata/meta.yaml
index e043fc729b5d1..cea53f8bb3615 100644
--- a/recipes/bioconductor-pathnetdata/meta.yaml
+++ b/recipes/bioconductor-pathnetdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "PathNetData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 20449e0dcf262e4f6c1f7e2521a00370
+  md5: d72e955b33c92f1703ae072ec788c1d9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pathnetdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pathnetdata/post-link.sh b/recipes/bioconductor-pathnetdata/post-link.sh
index fb162ea9a115b..c51f9a25a4d1a 100644
--- a/recipes/bioconductor-pathnetdata/post-link.sh
+++ b/recipes/bioconductor-pathnetdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "pathnetdata-1.36.0"
+installBiocDataPackage.sh "pathnetdata-1.38.0"
diff --git a/recipes/bioconductor-pathostat/meta.yaml b/recipes/bioconductor-pathostat/meta.yaml
index 091743b6f0830..adc375d616f15 100644
--- a/recipes/bioconductor-pathostat/meta.yaml
+++ b/recipes/bioconductor-pathostat/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "PathoStat" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2ea0b93420abe012159eb546e13e1c6b
+  md5: fd391aaf46df86a1608019bd2454d67f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pathostat", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
     - r-ape
     - r-base
     - r-corpcor
@@ -52,12 +53,12 @@ requirements:
     - r-webshot
     - r-xml
   run:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
     - r-ape
     - r-base
     - r-corpcor
diff --git a/recipes/bioconductor-pathrender/meta.yaml b/recipes/bioconductor-pathrender/meta.yaml
index be81c5a910394..8f6884f8bfe86 100644
--- a/recipes/bioconductor-pathrender/meta.yaml
+++ b/recipes/bioconductor-pathrender/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.68.0" %}
+{% set version = "1.70.0" %}
 {% set name = "pathRender" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 16706f4d1fe0a7f576b59b689c67d608
+  md5: 0796d30e763067880a67ed2435d2ac26
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pathrender", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ALL, hgu95av2.db
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - 'bioconductor-cmap >=1.15.0,<1.16.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-rcolorbrewer
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - 'bioconductor-cmap >=1.15.0,<1.16.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-rcolorbrewer
 test:
diff --git a/recipes/bioconductor-pathview/meta.yaml b/recipes/bioconductor-pathview/meta.yaml
index fe5c87f5c51fc..939a3d3b6bded 100644
--- a/recipes/bioconductor-pathview/meta.yaml
+++ b/recipes/bioconductor-pathview/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "pathview" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,32 +11,33 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d7f0911b44b34964b38a1e16e2dc7f90
+  md5: 5e17ceee29bb13083a2b11be28edacb0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pathview", max_pin="x.x") }}'
   noarch: generic
 # Suggests: gage, org.Mm.eg.db, RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-kegggraph >=1.60.0,<1.61.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-kegggraph >=1.62.0,<1.63.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-png
     - r-xml
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-kegggraph >=1.60.0,<1.61.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-kegggraph >=1.62.0,<1.63.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-png
     - r-xml
diff --git a/recipes/bioconductor-pathwaypca/meta.yaml b/recipes/bioconductor-pathwaypca/meta.yaml
index becc41189d541..caaad95452bb9 100644
--- a/recipes/bioconductor-pathwaypca/meta.yaml
+++ b/recipes/bioconductor-pathwaypca/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.1" %}
+{% set version = "1.18.0" %}
 {% set name = "pathwayPCA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3a75a06c3b8dd34524470a4bc72221e9
+  md5: 100ae90b68c015f8e344da1d3a2a4863
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pathwaypca", max_pin="x.x") }}'
   noarch: generic
 # Suggests: airway, circlize, grDevices, knitr, RCurl, reshape2, rmarkdown, SummarizedExperiment, survminer, testthat, tidyverse
 requirements:
diff --git a/recipes/bioconductor-paxtoolsr/meta.yaml b/recipes/bioconductor-paxtoolsr/meta.yaml
index 6b4a2e63d594a..230c75036cd40 100644
--- a/recipes/bioconductor-paxtoolsr/meta.yaml
+++ b/recipes/bioconductor-paxtoolsr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "paxtoolsr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 9c281fec96db1800644742f7e19d1c17
+  md5: 2ed785fb7d7859ff53d143baba8ff73d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-paxtoolsr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, BiocStyle, formatR, rmarkdown, RColorBrewer, foreach, doSNOW, parallel, org.Hs.eg.db, clusterProfiler
 # SystemRequirements: Java (>= 1.6)
diff --git a/recipes/bioconductor-pcaexplorer/meta.yaml b/recipes/bioconductor-pcaexplorer/meta.yaml
index 1c2db1a771ac3..9c16c5e3fce55 100644
--- a/recipes/bioconductor-pcaexplorer/meta.yaml
+++ b/recipes/bioconductor-pcaexplorer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.26.1" %}
+{% set version = "2.28.0" %}
 {% set name = "pcaExplorer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fd855f02c1ab744f8e2ab682bae0df19
+  md5: 622f43cef60e783c51d59ed8624019d8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pcaexplorer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle, markdown, airway, org.Hs.eg.db, htmltools
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - r-base64enc
     - r-dt
@@ -53,18 +54,18 @@ requirements:
     - r-threejs
     - r-tidyr
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - r-base64enc
     - r-dt
diff --git a/recipes/bioconductor-pcamethods/meta.yaml b/recipes/bioconductor-pcamethods/meta.yaml
index 38c796c6de0cb..a206627ebca74 100644
--- a/recipes/bioconductor-pcamethods/meta.yaml
+++ b/recipes/bioconductor-pcamethods/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.92.0" %}
+{% set version = "1.94.0" %}
 {% set name = "pcaMethods" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 265adae0e55769ebc4294914cb26b6db
+  md5: a989ad925a9852f55eb5e4d16d1529d0
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pcamethods", max_pin="x.x") }}'
 # Suggests: matrixStats, lattice, ggplot2
 # SystemRequirements: Rcpp
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-mass
     - 'r-rcpp >=0.11.3'
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-mass
     - 'r-rcpp >=0.11.3'
@@ -43,11 +44,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'GPL (>= 3)'
+  license: 'GPL-3.0-or-later'
   summary: 'A collection of PCA methods'
   description: 'Provides Bayesian PCA, Probabilistic PCA, Nipals PCA, Inverse Non-Linear PCA and the conventional SVD PCA. A cluster based method for missing value estimation is included for comparison. BPCA, PPCA and NipalsPCA may be used to perform PCA on incomplete data as well as for accurate missing value estimation. A set of methods for printing and plotting the results is also provided. All PCA methods make use of the same data structure (pcaRes) to provide a common interface to the PCA results. Initiated at the Max-Planck Institute for Molecular Plant Physiology, Golm, Germany.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:pcamethods
     - doi:10.1093/bioinformatics/btm069
diff --git a/recipes/bioconductor-pcan/meta.yaml b/recipes/bioconductor-pcan/meta.yaml
index d9970c2c400cd..47cee63d9eee6 100644
--- a/recipes/bioconductor-pcan/meta.yaml
+++ b/recipes/bioconductor-pcan/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "PCAN" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 33693be38c25d3ebb5ebb1bc7069a724
+  md5: 94596d43854d98aee2e6da198147772b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pcan", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, reactome.db, STRINGdb
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-pcatools/meta.yaml b/recipes/bioconductor-pcatools/meta.yaml
index 1e4eac16f8ce3..eabd07294dc9a 100644
--- a/recipes/bioconductor-pcatools/meta.yaml
+++ b/recipes/bioconductor-pcatools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.12.0" %}
+{% set version = "2.14.0" %}
 {% set name = "PCAtools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2f6cda4da875b51f599a56738386685b
+  md5: 316c693617402890169745a37dfaead6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pcatools", max_pin="x.x") }}'
 # Suggests: testthat, scran, BiocGenerics, knitr, Biobase, GEOquery, hgu133a.db, ggplotify, beachmat, RMTstat, ggalt, DESeq2, airway, org.Hs.eg.db, magrittr, rmarkdown
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-beachmat >=2.16.0,<2.17.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
     - r-base
     - r-bh
     - r-cowplot
@@ -39,11 +40,11 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-beachmat >=2.16.0,<2.17.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
     - r-base
     - r-bh
     - r-cowplot
diff --git a/recipes/bioconductor-pchicdata/meta.yaml b/recipes/bioconductor-pchicdata/meta.yaml
index 983a1d3ca9aff..ab00c43103068 100644
--- a/recipes/bioconductor-pchicdata/meta.yaml
+++ b/recipes/bioconductor-pchicdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "PCHiCdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7048c278620231f478014314a1a16e74
+  md5: 8791902075a44ae03c0366150aa3f61e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pchicdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle, knitr
 requirements:
   host:
-    - 'bioconductor-chicago >=1.28.0,<1.29.0'
+    - 'bioconductor-chicago >=1.30.0,<1.31.0'
     - r-base
   run:
-    - 'bioconductor-chicago >=1.28.0,<1.29.0'
+    - 'bioconductor-chicago >=1.30.0,<1.31.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pchicdata/post-link.sh b/recipes/bioconductor-pchicdata/post-link.sh
index 03b0822345427..3ab10ccd183c5 100644
--- a/recipes/bioconductor-pchicdata/post-link.sh
+++ b/recipes/bioconductor-pchicdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "pchicdata-1.28.0"
+installBiocDataPackage.sh "pchicdata-1.30.0"
diff --git a/recipes/bioconductor-pcxn/meta.yaml b/recipes/bioconductor-pcxn/meta.yaml
index 1d620be98fc79..ae4e85ca7141e 100644
--- a/recipes/bioconductor-pcxn/meta.yaml
+++ b/recipes/bioconductor-pcxn/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.22.0" %}
+{% set version = "2.24.0" %}
 {% set name = "pcxn" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: e984b3bb93ac67438338e968c76556fe
+  md5: bc66fe53111b80e8978344ddc59eff6f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pcxn", max_pin="x.x") }}'
   noarch: generic
 # Suggests: igraph, annotate, org.Hs.eg.db
 requirements:
   host:
-    - 'bioconductor-pcxndata >=2.22.0,<2.23.0'
+    - 'bioconductor-pcxndata >=2.24.0,<2.25.0'
     - r-base
     - r-pheatmap
   run:
-    - 'bioconductor-pcxndata >=2.22.0,<2.23.0'
+    - 'bioconductor-pcxndata >=2.24.0,<2.25.0'
     - r-base
     - r-pheatmap
 test:
diff --git a/recipes/bioconductor-pcxndata/meta.yaml b/recipes/bioconductor-pcxndata/meta.yaml
index a2411936baeab..edbfeb11dbe00 100644
--- a/recipes/bioconductor-pcxndata/meta.yaml
+++ b/recipes/bioconductor-pcxndata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.22.0" %}
+{% set version = "2.24.0" %}
 {% set name = "pcxnData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0d340cd964638e91faf2181216c06159
+  md5: 7814b1a6f5dbd08e71df1e92ea4328f6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pcxndata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: pcxn
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pcxndata/post-link.sh b/recipes/bioconductor-pcxndata/post-link.sh
index fba32530b08c6..2ff975463bbe2 100644
--- a/recipes/bioconductor-pcxndata/post-link.sh
+++ b/recipes/bioconductor-pcxndata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "pcxndata-2.22.0"
+installBiocDataPackage.sh "pcxndata-2.24.0"
diff --git a/recipes/bioconductor-pd.081229.hg18.promoter.medip.hx1/meta.yaml b/recipes/bioconductor-pd.081229.hg18.promoter.medip.hx1/meta.yaml
index 7d05a2bb3b616..d5211fafad4a4 100644
--- a/recipes/bioconductor-pd.081229.hg18.promoter.medip.hx1/meta.yaml
+++ b/recipes/bioconductor-pd.081229.hg18.promoter.medip.hx1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.4" %}
 {% set name = "pd.081229.hg18.promoter.medip.hx1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,30 +13,31 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: f3c240fa0d4503e94047be5ee323856b
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.081229.hg18.promoter.medip.hx1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - 'r-rsqlite >=0.7-1'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - 'r-rsqlite >=0.7-1'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.2006.07.18.hg18.refseq.promoter/meta.yaml b/recipes/bioconductor-pd.2006.07.18.hg18.refseq.promoter/meta.yaml
index bf32a1b76db93..608d949b2763d 100644
--- a/recipes/bioconductor-pd.2006.07.18.hg18.refseq.promoter/meta.yaml
+++ b/recipes/bioconductor-pd.2006.07.18.hg18.refseq.promoter/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.8.1" %}
 {% set name = "pd.2006.07.18.hg18.refseq.promoter" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,30 +13,31 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 00838332d75b82d212078a9957f495df
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.2006.07.18.hg18.refseq.promoter", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - 'r-rsqlite >=0.11.1'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - 'r-rsqlite >=0.11.1'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.2006.07.18.mm8.refseq.promoter/meta.yaml b/recipes/bioconductor-pd.2006.07.18.mm8.refseq.promoter/meta.yaml
index 4d04d0a6c9cc7..fa0edeb2bdc22 100644
--- a/recipes/bioconductor-pd.2006.07.18.mm8.refseq.promoter/meta.yaml
+++ b/recipes/bioconductor-pd.2006.07.18.mm8.refseq.promoter/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.3" %}
 {% set name = "pd.2006.07.18.mm8.refseq.promoter" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,30 +13,31 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 084b0a6759fd96d1bc775dd4c66c42b0
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.2006.07.18.mm8.refseq.promoter", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - 'r-rsqlite >=0.7-1'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - 'r-rsqlite >=0.7-1'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.2006.10.31.rn34.refseq.promoter/meta.yaml b/recipes/bioconductor-pd.2006.10.31.rn34.refseq.promoter/meta.yaml
index 2f905ead37d08..fc6ff228ae8d5 100644
--- a/recipes/bioconductor-pd.2006.10.31.rn34.refseq.promoter/meta.yaml
+++ b/recipes/bioconductor-pd.2006.10.31.rn34.refseq.promoter/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.3" %}
 {% set name = "pd.2006.10.31.rn34.refseq.promoter" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,30 +13,31 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: ab5bb767ad29b213e5a969a5fc51ee7d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.2006.10.31.rn34.refseq.promoter", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - 'r-rsqlite >=0.7-1'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - 'r-rsqlite >=0.7-1'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.ag/meta.yaml b/recipes/bioconductor-pd.ag/meta.yaml
index 40eb2c4d96f2c..28b10f01dcf8b 100644
--- a/recipes/bioconductor-pd.ag/meta.yaml
+++ b/recipes/bioconductor-pd.ag/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.ag" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 21fb288536568ff010ad4847b671f9d6
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.ag", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.aragene.1.0.st/meta.yaml b/recipes/bioconductor-pd.aragene.1.0.st/meta.yaml
index a57f85a752c91..626b8d0f92db1 100644
--- a/recipes/bioconductor-pd.aragene.1.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.aragene.1.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.aragene.1.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: ff87a0793fd4b713c4a45b6c1d4a4977
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.aragene.1.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.aragene.1.1.st/meta.yaml b/recipes/bioconductor-pd.aragene.1.1.st/meta.yaml
index 56468db0c0fb1..5393c826fa919 100644
--- a/recipes/bioconductor-pd.aragene.1.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.aragene.1.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.aragene.1.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 828ad790eb2495e396d7fcd9bcbf9133
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.aragene.1.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.atdschip.tiling/meta.yaml b/recipes/bioconductor-pd.atdschip.tiling/meta.yaml
index 033ae995d48ad..998de9d485df6 100644
--- a/recipes/bioconductor-pd.atdschip.tiling/meta.yaml
+++ b/recipes/bioconductor-pd.atdschip.tiling/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.38.0" %}
+{% set version = "0.40.0" %}
 {% set name = "pd.atdschip.tiling" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: a38ac90ece38e2e9f980966194865fe0
+  md5: a81ffdc7dfb8eb04e09ec133db77d0d4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.atdschip.tiling", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dbi
     - 'r-rsqlite >=0.10.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dbi
     - 'r-rsqlite >=0.10.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.atdschip.tiling/post-link.sh b/recipes/bioconductor-pd.atdschip.tiling/post-link.sh
index 7f8b5f2fb87ff..3b973708641a2 100644
--- a/recipes/bioconductor-pd.atdschip.tiling/post-link.sh
+++ b/recipes/bioconductor-pd.atdschip.tiling/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "pd.atdschip.tiling-0.38.0"
+installBiocDataPackage.sh "pd.atdschip.tiling-0.40.0"
diff --git a/recipes/bioconductor-pd.ath1.121501/meta.yaml b/recipes/bioconductor-pd.ath1.121501/meta.yaml
index 3b73d0a793e9b..994ab7c1fec7b 100644
--- a/recipes/bioconductor-pd.ath1.121501/meta.yaml
+++ b/recipes/bioconductor-pd.ath1.121501/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.ath1.121501" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: d7ed8640f0deac552e0083a091e72a72
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.ath1.121501", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.barley1/meta.yaml b/recipes/bioconductor-pd.barley1/meta.yaml
index fa7241a0434e7..de7dce84ec276 100644
--- a/recipes/bioconductor-pd.barley1/meta.yaml
+++ b/recipes/bioconductor-pd.barley1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.barley1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b8d11f5ad42e75f7a91931b46d449c1a
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.barley1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.bovgene.1.0.st/meta.yaml b/recipes/bioconductor-pd.bovgene.1.0.st/meta.yaml
index 6b8ebc175bfd3..4d35be7142cfe 100644
--- a/recipes/bioconductor-pd.bovgene.1.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.bovgene.1.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.bovgene.1.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 6e9747d13aee7825722562ccc49ad35f
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.bovgene.1.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.bovgene.1.1.st/meta.yaml b/recipes/bioconductor-pd.bovgene.1.1.st/meta.yaml
index cfc6be91851e0..8ff60cbe49df0 100644
--- a/recipes/bioconductor-pd.bovgene.1.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.bovgene.1.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.bovgene.1.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 342246c0a76755fcca458cd723b3e98e
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.bovgene.1.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.bovine/meta.yaml b/recipes/bioconductor-pd.bovine/meta.yaml
index 3aad529bd54ad..74ee2b7d78929 100644
--- a/recipes/bioconductor-pd.bovine/meta.yaml
+++ b/recipes/bioconductor-pd.bovine/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.bovine" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 6c7026dba53b54b547b1f1e135d043b3
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.bovine", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.bsubtilis/meta.yaml b/recipes/bioconductor-pd.bsubtilis/meta.yaml
index cb55649e8b54a..a22e19c9d4fdf 100644
--- a/recipes/bioconductor-pd.bsubtilis/meta.yaml
+++ b/recipes/bioconductor-pd.bsubtilis/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.bsubtilis" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 2261d8b0ec178beb432d71eafd90ec9a
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.bsubtilis", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.cangene.1.0.st/meta.yaml b/recipes/bioconductor-pd.cangene.1.0.st/meta.yaml
index 2d25076d471e1..be8e5256dd995 100644
--- a/recipes/bioconductor-pd.cangene.1.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.cangene.1.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.cangene.1.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 0a39d6378193e3f7d31a7210f6766eaf
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.cangene.1.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.cangene.1.1.st/meta.yaml b/recipes/bioconductor-pd.cangene.1.1.st/meta.yaml
index 99d7bd3b258ba..a37c378d3bfbc 100644
--- a/recipes/bioconductor-pd.cangene.1.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.cangene.1.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.cangene.1.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 946074601e7bee72f3b3dd6ae6b3bc33
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.cangene.1.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.canine.2/meta.yaml b/recipes/bioconductor-pd.canine.2/meta.yaml
index 34721787008bd..41ddf9797e74f 100644
--- a/recipes/bioconductor-pd.canine.2/meta.yaml
+++ b/recipes/bioconductor-pd.canine.2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.canine.2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: bc918d1953a3c7ac7168b60a53405a93
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.canine.2", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.canine/meta.yaml b/recipes/bioconductor-pd.canine/meta.yaml
index 888a7d729b6b8..e825b40089dc5 100644
--- a/recipes/bioconductor-pd.canine/meta.yaml
+++ b/recipes/bioconductor-pd.canine/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.canine" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 5b40fe9e40d0b7f36d338e413d121ba7
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.canine", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.celegans/meta.yaml b/recipes/bioconductor-pd.celegans/meta.yaml
index cdd01dc0395d6..c905fedbbd292 100644
--- a/recipes/bioconductor-pd.celegans/meta.yaml
+++ b/recipes/bioconductor-pd.celegans/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.celegans" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b90ea2e071522bb340c103a1c8270205
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.celegans", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.charm.hg18.example/meta.yaml b/recipes/bioconductor-pd.charm.hg18.example/meta.yaml
index eb3462223a211..86ae0af9f5bd9 100644
--- a/recipes/bioconductor-pd.charm.hg18.example/meta.yaml
+++ b/recipes/bioconductor-pd.charm.hg18.example/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.4" %}
 {% set name = "pd.charm.hg18.example" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,30 +13,31 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: e201d4281a23c202f57bae1135e226b4
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.charm.hg18.example", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - 'r-rsqlite >=0.7-1'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - 'r-rsqlite >=0.7-1'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.chicken/meta.yaml b/recipes/bioconductor-pd.chicken/meta.yaml
index ad15c7b0268ee..8a7c80e514a6c 100644
--- a/recipes/bioconductor-pd.chicken/meta.yaml
+++ b/recipes/bioconductor-pd.chicken/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.chicken" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: af79b6d0910621910e72ea374499e5eb
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.chicken", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.chigene.1.0.st/meta.yaml b/recipes/bioconductor-pd.chigene.1.0.st/meta.yaml
index 9f9eb85707463..566afb7f346b2 100644
--- a/recipes/bioconductor-pd.chigene.1.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.chigene.1.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.chigene.1.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: e37cb047678fabb1801109d4efd16773
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.chigene.1.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.chigene.1.1.st/meta.yaml b/recipes/bioconductor-pd.chigene.1.1.st/meta.yaml
index ad75c72b6f078..8db3bb63df879 100644
--- a/recipes/bioconductor-pd.chigene.1.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.chigene.1.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.chigene.1.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: bec602b45961607f5a4571977d54e015
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.chigene.1.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.chogene.2.0.st/meta.yaml b/recipes/bioconductor-pd.chogene.2.0.st/meta.yaml
index 03db8e8c462f9..839f379c0b0a9 100644
--- a/recipes/bioconductor-pd.chogene.2.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.chogene.2.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.chogene.2.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 641718e3d172838185a200bac3d32433
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.chogene.2.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.chogene.2.1.st/meta.yaml b/recipes/bioconductor-pd.chogene.2.1.st/meta.yaml
index ae06030e3c7d1..5a6d320121240 100644
--- a/recipes/bioconductor-pd.chogene.2.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.chogene.2.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.chogene.2.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: ed25825e58a514cdde70b961bce9b4d7
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.chogene.2.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.citrus/meta.yaml b/recipes/bioconductor-pd.citrus/meta.yaml
index 3252ab6e7afaa..ff50b6ed856a3 100644
--- a/recipes/bioconductor-pd.citrus/meta.yaml
+++ b/recipes/bioconductor-pd.citrus/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.citrus" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: dee9b3298b84e7dd5152f48ad449b15a
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.citrus", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.clariom.d.human/meta.yaml b/recipes/bioconductor-pd.clariom.d.human/meta.yaml
index a81580f52c92e..69c689cf4964b 100644
--- a/recipes/bioconductor-pd.clariom.d.human/meta.yaml
+++ b/recipes/bioconductor-pd.clariom.d.human/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.1" %}
 {% set name = "pd.clariom.d.human" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 9d3505af53cc7c99980f29c527f0f37d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.clariom.d.human", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.clariom.s.human.ht/meta.yaml b/recipes/bioconductor-pd.clariom.s.human.ht/meta.yaml
index 5379cb80b4589..aa251a19d8271 100644
--- a/recipes/bioconductor-pd.clariom.s.human.ht/meta.yaml
+++ b/recipes/bioconductor-pd.clariom.s.human.ht/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.1" %}
 {% set name = "pd.clariom.s.human.ht" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 90f910bea1b1aeb550a3f1bdd91d1a06
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.clariom.s.human.ht", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.clariom.s.human/meta.yaml b/recipes/bioconductor-pd.clariom.s.human/meta.yaml
index 9513c52802345..883abafec76d4 100644
--- a/recipes/bioconductor-pd.clariom.s.human/meta.yaml
+++ b/recipes/bioconductor-pd.clariom.s.human/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.1" %}
 {% set name = "pd.clariom.s.human" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 797afe8a6a8041453a34ced3cce34884
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.clariom.s.human", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.clariom.s.mouse.ht/meta.yaml b/recipes/bioconductor-pd.clariom.s.mouse.ht/meta.yaml
index f2d3116b4cf5f..01a66173dfb16 100644
--- a/recipes/bioconductor-pd.clariom.s.mouse.ht/meta.yaml
+++ b/recipes/bioconductor-pd.clariom.s.mouse.ht/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.1" %}
 {% set name = "pd.clariom.s.mouse.ht" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 9cb6f77cf9666a0d54e1eacb904fd57c
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.clariom.s.mouse.ht", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.clariom.s.mouse/meta.yaml b/recipes/bioconductor-pd.clariom.s.mouse/meta.yaml
index 6ec762255afa7..6339960068e70 100644
--- a/recipes/bioconductor-pd.clariom.s.mouse/meta.yaml
+++ b/recipes/bioconductor-pd.clariom.s.mouse/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.1" %}
 {% set name = "pd.clariom.s.mouse" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: e3e4ce2b22a78faf525dd6c0c0b2a42d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.clariom.s.mouse", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.clariom.s.rat.ht/meta.yaml b/recipes/bioconductor-pd.clariom.s.rat.ht/meta.yaml
index c24c95ff7c0bc..057c509ee1c90 100644
--- a/recipes/bioconductor-pd.clariom.s.rat.ht/meta.yaml
+++ b/recipes/bioconductor-pd.clariom.s.rat.ht/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.1" %}
 {% set name = "pd.clariom.s.rat.ht" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: be901eb9e8830f3e5bedf154189a3743
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.clariom.s.rat.ht", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.clariom.s.rat/meta.yaml b/recipes/bioconductor-pd.clariom.s.rat/meta.yaml
index 36fe6e688e28b..92289bca2dfa0 100644
--- a/recipes/bioconductor-pd.clariom.s.rat/meta.yaml
+++ b/recipes/bioconductor-pd.clariom.s.rat/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.1" %}
 {% set name = "pd.clariom.s.rat" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: be464b3eaea8eb8bdbcca6047fce4dea
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.clariom.s.rat", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.cotton/meta.yaml b/recipes/bioconductor-pd.cotton/meta.yaml
index a8d90c4caaaa5..b086689a2b42f 100644
--- a/recipes/bioconductor-pd.cotton/meta.yaml
+++ b/recipes/bioconductor-pd.cotton/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.cotton" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 78c408902bcefb8c695119767534b393
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.cotton", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.cyngene.1.0.st/meta.yaml b/recipes/bioconductor-pd.cyngene.1.0.st/meta.yaml
index 3669b80f76118..63fe0e2e116cf 100644
--- a/recipes/bioconductor-pd.cyngene.1.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.cyngene.1.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.cyngene.1.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 784fac6cc92a0fe46dae32c9b737812a
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.cyngene.1.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.cyngene.1.1.st/meta.yaml b/recipes/bioconductor-pd.cyngene.1.1.st/meta.yaml
index 55402f20e119c..ee76fadc3b263 100644
--- a/recipes/bioconductor-pd.cyngene.1.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.cyngene.1.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.cyngene.1.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: a6217267e3e08a15f70c600918c7d4f6
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.cyngene.1.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.cyrgene.1.0.st/meta.yaml b/recipes/bioconductor-pd.cyrgene.1.0.st/meta.yaml
index 0a8b22e70c70b..9862258a4d044 100644
--- a/recipes/bioconductor-pd.cyrgene.1.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.cyrgene.1.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.cyrgene.1.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 63228c07d3d16d6c62e9c0e83f10a855
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.cyrgene.1.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.cyrgene.1.1.st/meta.yaml b/recipes/bioconductor-pd.cyrgene.1.1.st/meta.yaml
index 38e8eeda3855f..e0cf4deb6049c 100644
--- a/recipes/bioconductor-pd.cyrgene.1.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.cyrgene.1.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.cyrgene.1.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: dbe3bb580b96aaddcc597de45159320d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.cyrgene.1.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.cytogenetics.array/meta.yaml b/recipes/bioconductor-pd.cytogenetics.array/meta.yaml
index 4b79cff1b026a..cc6d19032f9c6 100644
--- a/recipes/bioconductor-pd.cytogenetics.array/meta.yaml
+++ b/recipes/bioconductor-pd.cytogenetics.array/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.cytogenetics.array" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 8c359ff56a9a558d370dc9a6a54218e0
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.cytogenetics.array", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.drogene.1.0.st/meta.yaml b/recipes/bioconductor-pd.drogene.1.0.st/meta.yaml
index 39c4aa15c6cd8..00cff01593c5b 100644
--- a/recipes/bioconductor-pd.drogene.1.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.drogene.1.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.drogene.1.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 67f92a97a5b78a95693edfdd32b67e93
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.drogene.1.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.drogene.1.1.st/meta.yaml b/recipes/bioconductor-pd.drogene.1.1.st/meta.yaml
index 24c8e44762b4f..3f2c2a0e4aea8 100644
--- a/recipes/bioconductor-pd.drogene.1.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.drogene.1.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.drogene.1.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 5c63236ea91390d49dbabea63a48f0a2
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.drogene.1.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.drosgenome1/meta.yaml b/recipes/bioconductor-pd.drosgenome1/meta.yaml
index f642da5de5c9d..e6a9cb0bbd747 100644
--- a/recipes/bioconductor-pd.drosgenome1/meta.yaml
+++ b/recipes/bioconductor-pd.drosgenome1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.drosgenome1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 59c1a37a7d6a43fc70ff8756bf1195ef
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.drosgenome1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.drosophila.2/meta.yaml b/recipes/bioconductor-pd.drosophila.2/meta.yaml
index da85a23a63ad9..ce040c054161a 100644
--- a/recipes/bioconductor-pd.drosophila.2/meta.yaml
+++ b/recipes/bioconductor-pd.drosophila.2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.drosophila.2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: ddb821e35e722af8dcf0807c6da4fac1
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.drosophila.2", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.e.coli.2/meta.yaml b/recipes/bioconductor-pd.e.coli.2/meta.yaml
index b6c8de0807693..65befa3aa9ca4 100644
--- a/recipes/bioconductor-pd.e.coli.2/meta.yaml
+++ b/recipes/bioconductor-pd.e.coli.2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.e.coli.2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 9176faa60a0c252a815b2a74d2f63dd4
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.e.coli.2", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.ecoli.asv2/meta.yaml b/recipes/bioconductor-pd.ecoli.asv2/meta.yaml
index 77f423303b8d9..9bff540ced298 100644
--- a/recipes/bioconductor-pd.ecoli.asv2/meta.yaml
+++ b/recipes/bioconductor-pd.ecoli.asv2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.ecoli.asv2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: d789ddf5a178a9a50c5587ee3ab294a4
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.ecoli.asv2", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.ecoli/meta.yaml b/recipes/bioconductor-pd.ecoli/meta.yaml
index 735960ab3f2ee..faee4d2687af3 100644
--- a/recipes/bioconductor-pd.ecoli/meta.yaml
+++ b/recipes/bioconductor-pd.ecoli/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.ecoli" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 077e91b2567a32780305f0fb6b126fe9
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.ecoli", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.elegene.1.0.st/meta.yaml b/recipes/bioconductor-pd.elegene.1.0.st/meta.yaml
index 01ce29cf5e66c..dea66c5327058 100644
--- a/recipes/bioconductor-pd.elegene.1.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.elegene.1.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.elegene.1.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b6110c58d5964703c7117e5e0668c901
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.elegene.1.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.elegene.1.1.st/meta.yaml b/recipes/bioconductor-pd.elegene.1.1.st/meta.yaml
index b0c35c061c975..cf32b4ff695a2 100644
--- a/recipes/bioconductor-pd.elegene.1.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.elegene.1.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.elegene.1.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 1dbe166ea347a5a7e240db925d2081c7
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.elegene.1.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.equgene.1.0.st/meta.yaml b/recipes/bioconductor-pd.equgene.1.0.st/meta.yaml
index 0d4b8edc223b8..2ec09700424d3 100644
--- a/recipes/bioconductor-pd.equgene.1.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.equgene.1.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.equgene.1.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 3448f36fdb899f04702be37ffab4c4c7
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.equgene.1.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.equgene.1.1.st/meta.yaml b/recipes/bioconductor-pd.equgene.1.1.st/meta.yaml
index 1fa43fce2724e..f5976ac239916 100644
--- a/recipes/bioconductor-pd.equgene.1.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.equgene.1.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.equgene.1.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: bed32525513ce25f14d433ce805e7d6c
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.equgene.1.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.feinberg.hg18.me.hx1/meta.yaml b/recipes/bioconductor-pd.feinberg.hg18.me.hx1/meta.yaml
index 28de8519985b6..fcc901394bc1c 100644
--- a/recipes/bioconductor-pd.feinberg.hg18.me.hx1/meta.yaml
+++ b/recipes/bioconductor-pd.feinberg.hg18.me.hx1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.3" %}
 {% set name = "pd.feinberg.hg18.me.hx1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,30 +13,31 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b6eeaf79671bab6f597965009516ce57
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.feinberg.hg18.me.hx1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - 'r-rsqlite >=0.7-1'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - 'r-rsqlite >=0.7-1'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.feinberg.mm8.me.hx1/meta.yaml b/recipes/bioconductor-pd.feinberg.mm8.me.hx1/meta.yaml
index 53ddd0a4744fd..941ef51cff169 100644
--- a/recipes/bioconductor-pd.feinberg.mm8.me.hx1/meta.yaml
+++ b/recipes/bioconductor-pd.feinberg.mm8.me.hx1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.3" %}
 {% set name = "pd.feinberg.mm8.me.hx1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,30 +13,31 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 7332102b69fc9ee087f52d3cdc311d00
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.feinberg.mm8.me.hx1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - 'r-rsqlite >=0.7-1'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - 'r-rsqlite >=0.7-1'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.felgene.1.0.st/meta.yaml b/recipes/bioconductor-pd.felgene.1.0.st/meta.yaml
index 4b73bb1bf19c8..96ca01bb821b7 100644
--- a/recipes/bioconductor-pd.felgene.1.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.felgene.1.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.felgene.1.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b7ac0a5cbde5f248aac5d0a7422bd88d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.felgene.1.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.felgene.1.1.st/meta.yaml b/recipes/bioconductor-pd.felgene.1.1.st/meta.yaml
index cd2d1ae2be574..aa2ec52c8c490 100644
--- a/recipes/bioconductor-pd.felgene.1.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.felgene.1.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.felgene.1.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 734807a7f3608f6c44c76df7eee04c99
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.felgene.1.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.fingene.1.0.st/meta.yaml b/recipes/bioconductor-pd.fingene.1.0.st/meta.yaml
index 400177cbda04e..aac9805b9a463 100644
--- a/recipes/bioconductor-pd.fingene.1.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.fingene.1.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.fingene.1.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b79e4f8a52cad3b62e32401bbe74603d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.fingene.1.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.fingene.1.1.st/meta.yaml b/recipes/bioconductor-pd.fingene.1.1.st/meta.yaml
index 9d7da08a16f50..543282bb74fc8 100644
--- a/recipes/bioconductor-pd.fingene.1.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.fingene.1.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.fingene.1.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 29030b14a0e8f8073874fb694a8c0c09
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.fingene.1.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.genomewidesnp.5/meta.yaml b/recipes/bioconductor-pd.genomewidesnp.5/meta.yaml
index 3822c217acbf6..a9f3b15e3ee6d 100644
--- a/recipes/bioconductor-pd.genomewidesnp.5/meta.yaml
+++ b/recipes/bioconductor-pd.genomewidesnp.5/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.1" %}
 {% set name = "pd.genomewidesnp.5" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: d02255c861e82fca6a7445ada0c69e5d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.genomewidesnp.5", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.genomewidesnp.6/meta.yaml b/recipes/bioconductor-pd.genomewidesnp.6/meta.yaml
index 7f1c3bc2d2fbd..b6b0437fd72fd 100644
--- a/recipes/bioconductor-pd.genomewidesnp.6/meta.yaml
+++ b/recipes/bioconductor-pd.genomewidesnp.6/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.1" %}
 {% set name = "pd.genomewidesnp.6" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 6e5369234e251c763f4f6c0220fbcb0c
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.genomewidesnp.6", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.guigene.1.0.st/meta.yaml b/recipes/bioconductor-pd.guigene.1.0.st/meta.yaml
index c4286326c613f..d1840016e0d28 100644
--- a/recipes/bioconductor-pd.guigene.1.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.guigene.1.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.guigene.1.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 29fe31499931836af72ddd0c7d06acfa
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.guigene.1.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.guigene.1.1.st/meta.yaml b/recipes/bioconductor-pd.guigene.1.1.st/meta.yaml
index 189178fecf6df..6c1aedcc5bf9d 100644
--- a/recipes/bioconductor-pd.guigene.1.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.guigene.1.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.guigene.1.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: aa3e0389c596a3676322104de5ad2358
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.guigene.1.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.hc.g110/meta.yaml b/recipes/bioconductor-pd.hc.g110/meta.yaml
index 930ada7cf2017..dce97b5d9dd19 100644
--- a/recipes/bioconductor-pd.hc.g110/meta.yaml
+++ b/recipes/bioconductor-pd.hc.g110/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.hc.g110" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 5c5418c588ed28e2fa088c7952c48b91
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.hc.g110", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.hg.focus/meta.yaml b/recipes/bioconductor-pd.hg.focus/meta.yaml
index d8c330ad4bc2e..07333501d804f 100644
--- a/recipes/bioconductor-pd.hg.focus/meta.yaml
+++ b/recipes/bioconductor-pd.hg.focus/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.hg.focus" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: a89f344ae7ff8061a8e7968f155f4bcf
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.hg.focus", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.hg.u133.plus.2/meta.yaml b/recipes/bioconductor-pd.hg.u133.plus.2/meta.yaml
index 3f747cf51c252..7c7d03a5cbfbd 100644
--- a/recipes/bioconductor-pd.hg.u133.plus.2/meta.yaml
+++ b/recipes/bioconductor-pd.hg.u133.plus.2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.hg.u133.plus.2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 8a87aa63c04e84266962bdde5226c06c
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.hg.u133.plus.2", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.hg.u133a.2/meta.yaml b/recipes/bioconductor-pd.hg.u133a.2/meta.yaml
index 506d65b0d49ac..aa934add79651 100644
--- a/recipes/bioconductor-pd.hg.u133a.2/meta.yaml
+++ b/recipes/bioconductor-pd.hg.u133a.2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.hg.u133a.2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: a7941473bf081831fad4f4412023d9ee
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.hg.u133a.2", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.hg.u133a.tag/meta.yaml b/recipes/bioconductor-pd.hg.u133a.tag/meta.yaml
index 9d54bcf7d86db..966e51ee906c8 100644
--- a/recipes/bioconductor-pd.hg.u133a.tag/meta.yaml
+++ b/recipes/bioconductor-pd.hg.u133a.tag/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.hg.u133a.tag" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: e090383098d6e1062b290889fba065d5
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.hg.u133a.tag", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.hg.u133a/meta.yaml b/recipes/bioconductor-pd.hg.u133a/meta.yaml
index 92258642e435e..fd20c37e93ead 100644
--- a/recipes/bioconductor-pd.hg.u133a/meta.yaml
+++ b/recipes/bioconductor-pd.hg.u133a/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.hg.u133a" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 05b4521f65ab294a5040a0c60198d22c
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.hg.u133a", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.hg.u133b/meta.yaml b/recipes/bioconductor-pd.hg.u133b/meta.yaml
index 792faa79356bb..4bfe9bab4a6e3 100644
--- a/recipes/bioconductor-pd.hg.u133b/meta.yaml
+++ b/recipes/bioconductor-pd.hg.u133b/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.hg.u133b" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: c5eac82ad7480571b9f2b442b4a8faa6
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.hg.u133b", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.hg.u219/meta.yaml b/recipes/bioconductor-pd.hg.u219/meta.yaml
index 03cab68e7f700..f55dc3f703be2 100644
--- a/recipes/bioconductor-pd.hg.u219/meta.yaml
+++ b/recipes/bioconductor-pd.hg.u219/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.hg.u219" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: dab073d315af47ff3001c72a6d1e7972
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.hg.u219", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.hg.u95a/meta.yaml b/recipes/bioconductor-pd.hg.u95a/meta.yaml
index 0942bd87f9d52..e66160602d507 100644
--- a/recipes/bioconductor-pd.hg.u95a/meta.yaml
+++ b/recipes/bioconductor-pd.hg.u95a/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.hg.u95a" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: a9ad7d6a085e0e3ed7623902e7810da0
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.hg.u95a", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.hg.u95av2/meta.yaml b/recipes/bioconductor-pd.hg.u95av2/meta.yaml
index 67a80141c2fe7..95848bb127f5f 100644
--- a/recipes/bioconductor-pd.hg.u95av2/meta.yaml
+++ b/recipes/bioconductor-pd.hg.u95av2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.hg.u95av2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 3a4182b529bc07ec91277a95b1462468
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.hg.u95av2", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.hg.u95b/meta.yaml b/recipes/bioconductor-pd.hg.u95b/meta.yaml
index 5c34719af06f1..8d252d62d20d3 100644
--- a/recipes/bioconductor-pd.hg.u95b/meta.yaml
+++ b/recipes/bioconductor-pd.hg.u95b/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.hg.u95b" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: a7f10f91e920e191c5009fac8ca79c24
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.hg.u95b", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.hg.u95c/meta.yaml b/recipes/bioconductor-pd.hg.u95c/meta.yaml
index e56011d16a928..b498166f902ea 100644
--- a/recipes/bioconductor-pd.hg.u95c/meta.yaml
+++ b/recipes/bioconductor-pd.hg.u95c/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.hg.u95c" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 85655bf7a9ecd7aaa867e05899c5e3e4
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.hg.u95c", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.hg.u95d/meta.yaml b/recipes/bioconductor-pd.hg.u95d/meta.yaml
index 3dacf5a5cc3c1..ee978c70f173e 100644
--- a/recipes/bioconductor-pd.hg.u95d/meta.yaml
+++ b/recipes/bioconductor-pd.hg.u95d/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.hg.u95d" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 946701ecfc9cccb46aaeb57a4d6fe1c5
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.hg.u95d", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.hg.u95e/meta.yaml b/recipes/bioconductor-pd.hg.u95e/meta.yaml
index cdac7d0b9bab1..51b85127f3579 100644
--- a/recipes/bioconductor-pd.hg.u95e/meta.yaml
+++ b/recipes/bioconductor-pd.hg.u95e/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.hg.u95e" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 9295e2fd1b4be6ff58477ea5a5de45ee
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.hg.u95e", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.hg18.60mer.expr/meta.yaml b/recipes/bioconductor-pd.hg18.60mer.expr/meta.yaml
index fcd4a33ca8f27..c94697cfd3954 100644
--- a/recipes/bioconductor-pd.hg18.60mer.expr/meta.yaml
+++ b/recipes/bioconductor-pd.hg18.60mer.expr/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.hg18.60mer.expr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: ee8d3813f74edce4e796933aa63999fb
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.hg18.60mer.expr", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.ht.hg.u133.plus.pm/meta.yaml b/recipes/bioconductor-pd.ht.hg.u133.plus.pm/meta.yaml
index 209d6f26bb27b..f8c8caeeabca3 100644
--- a/recipes/bioconductor-pd.ht.hg.u133.plus.pm/meta.yaml
+++ b/recipes/bioconductor-pd.ht.hg.u133.plus.pm/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.ht.hg.u133.plus.pm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 5b1c3dd0ab3f8b21154982c197512a7c
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.ht.hg.u133.plus.pm", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.ht.hg.u133a/meta.yaml b/recipes/bioconductor-pd.ht.hg.u133a/meta.yaml
index a599fd6dbd8db..10d4330dd368f 100644
--- a/recipes/bioconductor-pd.ht.hg.u133a/meta.yaml
+++ b/recipes/bioconductor-pd.ht.hg.u133a/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.ht.hg.u133a" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 80a82f43083f95e1e9f5e2e2da2e288e
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.ht.hg.u133a", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.ht.mg.430a/meta.yaml b/recipes/bioconductor-pd.ht.mg.430a/meta.yaml
index d40943fa17101..0ffa3f528e690 100644
--- a/recipes/bioconductor-pd.ht.mg.430a/meta.yaml
+++ b/recipes/bioconductor-pd.ht.mg.430a/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.ht.mg.430a" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 65ea4fae22d21ad70998ba3ea034dcc0
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.ht.mg.430a", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.hta.2.0/meta.yaml b/recipes/bioconductor-pd.hta.2.0/meta.yaml
index 96fc7cc93730e..7e82318382efb 100644
--- a/recipes/bioconductor-pd.hta.2.0/meta.yaml
+++ b/recipes/bioconductor-pd.hta.2.0/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.2" %}
 {% set name = "pd.hta.2.0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 8e13f85ece49c38da73eaf7b2247f5f0
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.hta.2.0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.hu6800/meta.yaml b/recipes/bioconductor-pd.hu6800/meta.yaml
index 7dc594ce3fabe..9cb8265192e77 100644
--- a/recipes/bioconductor-pd.hu6800/meta.yaml
+++ b/recipes/bioconductor-pd.hu6800/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.hu6800" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 9a3a3edde6d6f31b9e90dc32aa68875d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.hu6800", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.huex.1.0.st.v2/meta.yaml b/recipes/bioconductor-pd.huex.1.0.st.v2/meta.yaml
index a741e0a6c9308..92f4d90dcf4f9 100644
--- a/recipes/bioconductor-pd.huex.1.0.st.v2/meta.yaml
+++ b/recipes/bioconductor-pd.huex.1.0.st.v2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.1" %}
 {% set name = "pd.huex.1.0.st.v2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: f4c4836c53447890b75b012efbdef3e9
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.huex.1.0.st.v2", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.hugene.1.0.st.v1/meta.yaml b/recipes/bioconductor-pd.hugene.1.0.st.v1/meta.yaml
index 64e47c869f52a..a6b0f80043946 100644
--- a/recipes/bioconductor-pd.hugene.1.0.st.v1/meta.yaml
+++ b/recipes/bioconductor-pd.hugene.1.0.st.v1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.1" %}
 {% set name = "pd.hugene.1.0.st.v1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 8cb24c351aee5bf216180e4b19742506
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.hugene.1.0.st.v1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.hugene.1.1.st.v1/meta.yaml b/recipes/bioconductor-pd.hugene.1.1.st.v1/meta.yaml
index ea64270d668c8..bc8bf2b9c2ee4 100644
--- a/recipes/bioconductor-pd.hugene.1.1.st.v1/meta.yaml
+++ b/recipes/bioconductor-pd.hugene.1.1.st.v1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.1" %}
 {% set name = "pd.hugene.1.1.st.v1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 7a17ee4f7d258792be1d21be7d03deb0
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.hugene.1.1.st.v1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.hugene.2.0.st/meta.yaml b/recipes/bioconductor-pd.hugene.2.0.st/meta.yaml
index 409673e5b749a..aded0828efe02 100644
--- a/recipes/bioconductor-pd.hugene.2.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.hugene.2.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.1" %}
 {% set name = "pd.hugene.2.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: e484209aa0c2a839c3445d91c1a799ce
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.hugene.2.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.hugene.2.1.st/meta.yaml b/recipes/bioconductor-pd.hugene.2.1.st/meta.yaml
index b4e55987dadbe..4ba83c112fde7 100644
--- a/recipes/bioconductor-pd.hugene.2.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.hugene.2.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.1" %}
 {% set name = "pd.hugene.2.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 164227f10b87f87059e4ae27b40f5238
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.hugene.2.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.maize/meta.yaml b/recipes/bioconductor-pd.maize/meta.yaml
index 08e4a585a46d8..6acdd12194b41 100644
--- a/recipes/bioconductor-pd.maize/meta.yaml
+++ b/recipes/bioconductor-pd.maize/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.maize" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: a1689518c8525d3dfa97e870f90b7a7b
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.maize", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.mapping250k.nsp/meta.yaml b/recipes/bioconductor-pd.mapping250k.nsp/meta.yaml
index 6ad3366094538..d662313ff247e 100644
--- a/recipes/bioconductor-pd.mapping250k.nsp/meta.yaml
+++ b/recipes/bioconductor-pd.mapping250k.nsp/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.mapping250k.nsp" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 2786d00e1d621a9c415a599b4afe838b
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.mapping250k.nsp", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.mapping250k.sty/meta.yaml b/recipes/bioconductor-pd.mapping250k.sty/meta.yaml
index 04ae6d0f76244..431d2f563a670 100644
--- a/recipes/bioconductor-pd.mapping250k.sty/meta.yaml
+++ b/recipes/bioconductor-pd.mapping250k.sty/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.mapping250k.sty" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 0db5992855eaf9b8f61f8bc2e57ef347
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.mapping250k.sty", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.mapping50k.hind240/meta.yaml b/recipes/bioconductor-pd.mapping50k.hind240/meta.yaml
index 8453b2010cf8c..22b5b5394c56e 100644
--- a/recipes/bioconductor-pd.mapping50k.hind240/meta.yaml
+++ b/recipes/bioconductor-pd.mapping50k.hind240/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.mapping50k.hind240" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 83615dcb01eb381f0c69e07504809094
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.mapping50k.hind240", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.mapping50k.xba240/meta.yaml b/recipes/bioconductor-pd.mapping50k.xba240/meta.yaml
index f0ac8da648f4f..351f1e536040b 100644
--- a/recipes/bioconductor-pd.mapping50k.xba240/meta.yaml
+++ b/recipes/bioconductor-pd.mapping50k.xba240/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.mapping50k.xba240" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: eb0f9250fe0d7b590ca9938fee88f2e7
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.mapping50k.xba240", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.margene.1.0.st/meta.yaml b/recipes/bioconductor-pd.margene.1.0.st/meta.yaml
index 586b5883ac30e..6300298e4726a 100644
--- a/recipes/bioconductor-pd.margene.1.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.margene.1.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.margene.1.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: f670b192e4b453f13bb7cae154b5de42
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.margene.1.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.margene.1.1.st/meta.yaml b/recipes/bioconductor-pd.margene.1.1.st/meta.yaml
index 55ffdd6dfda0f..4a7d544a718bf 100644
--- a/recipes/bioconductor-pd.margene.1.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.margene.1.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.margene.1.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: efd71aeb9c5ab36c2ddeccf9cb66ddec
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.margene.1.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.medgene.1.0.st/meta.yaml b/recipes/bioconductor-pd.medgene.1.0.st/meta.yaml
index 8a0d04ac3eb19..408d867813d22 100644
--- a/recipes/bioconductor-pd.medgene.1.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.medgene.1.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.medgene.1.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 2a0048ccd5310ec5c45bb691f3c25885
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.medgene.1.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.medgene.1.1.st/meta.yaml b/recipes/bioconductor-pd.medgene.1.1.st/meta.yaml
index fe0bca8c284d1..f519411548246 100644
--- a/recipes/bioconductor-pd.medgene.1.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.medgene.1.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.medgene.1.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: d96894cfea509734af62110311100142
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.medgene.1.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.medicago/meta.yaml b/recipes/bioconductor-pd.medicago/meta.yaml
index 26b8b1490b8c2..769fa2b2e172b 100644
--- a/recipes/bioconductor-pd.medicago/meta.yaml
+++ b/recipes/bioconductor-pd.medicago/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.medicago" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 0e3f00777919374619a9dc8244167068
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.medicago", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.mg.u74a/meta.yaml b/recipes/bioconductor-pd.mg.u74a/meta.yaml
index 60ac7a18bc7dc..e94ef1d820d7e 100644
--- a/recipes/bioconductor-pd.mg.u74a/meta.yaml
+++ b/recipes/bioconductor-pd.mg.u74a/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.mg.u74a" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: a855c7d2b80e9b8f9bbc1a3f83aca799
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.mg.u74a", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.mg.u74av2/meta.yaml b/recipes/bioconductor-pd.mg.u74av2/meta.yaml
index 82a3f943a5f07..12c4b3403f631 100644
--- a/recipes/bioconductor-pd.mg.u74av2/meta.yaml
+++ b/recipes/bioconductor-pd.mg.u74av2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.mg.u74av2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 01c6e4da9c2ad0f1939482284dd5b421
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.mg.u74av2", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.mg.u74b/meta.yaml b/recipes/bioconductor-pd.mg.u74b/meta.yaml
index b8d715cc903d5..d3a265d3115ec 100644
--- a/recipes/bioconductor-pd.mg.u74b/meta.yaml
+++ b/recipes/bioconductor-pd.mg.u74b/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.mg.u74b" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 47bb81abaceba6dfaab3e0987f28706c
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.mg.u74b", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.mg.u74bv2/meta.yaml b/recipes/bioconductor-pd.mg.u74bv2/meta.yaml
index d89e472d6734b..3cba6e2bcbf62 100644
--- a/recipes/bioconductor-pd.mg.u74bv2/meta.yaml
+++ b/recipes/bioconductor-pd.mg.u74bv2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.mg.u74bv2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: dbb6cd5b16bd5cafbf654744bc2d5c5c
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.mg.u74bv2", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.mg.u74c/meta.yaml b/recipes/bioconductor-pd.mg.u74c/meta.yaml
index b6d655fdb12b2..d34eec569ed78 100644
--- a/recipes/bioconductor-pd.mg.u74c/meta.yaml
+++ b/recipes/bioconductor-pd.mg.u74c/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.mg.u74c" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 01f10eae99481f03d1d5a6a2c2f01733
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.mg.u74c", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.mg.u74cv2/meta.yaml b/recipes/bioconductor-pd.mg.u74cv2/meta.yaml
index db3aa3aef3958..dded57370137e 100644
--- a/recipes/bioconductor-pd.mg.u74cv2/meta.yaml
+++ b/recipes/bioconductor-pd.mg.u74cv2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.mg.u74cv2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b60943b90b95a24fcf93f8c245fd88be
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.mg.u74cv2", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.mirna.1.0/meta.yaml b/recipes/bioconductor-pd.mirna.1.0/meta.yaml
index 63eacb6291fbd..cc8a6f4292057 100644
--- a/recipes/bioconductor-pd.mirna.1.0/meta.yaml
+++ b/recipes/bioconductor-pd.mirna.1.0/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.mirna.1.0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 8dfeb82a9da6d6f73e5fb716a2867a34
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.mirna.1.0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.mirna.2.0/meta.yaml b/recipes/bioconductor-pd.mirna.2.0/meta.yaml
index 569cf51670331..39fb38a4ddbc3 100644
--- a/recipes/bioconductor-pd.mirna.2.0/meta.yaml
+++ b/recipes/bioconductor-pd.mirna.2.0/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.mirna.2.0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: aab53cbc62fbd7727ca0303aeb1dca13
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.mirna.2.0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.mirna.3.0/meta.yaml b/recipes/bioconductor-pd.mirna.3.0/meta.yaml
index 6e83b6b7f4847..1fa7ec6d77b92 100644
--- a/recipes/bioconductor-pd.mirna.3.0/meta.yaml
+++ b/recipes/bioconductor-pd.mirna.3.0/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.mirna.3.0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 1265f1969c618b3b5121e6a77ba57009
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.mirna.3.0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.mirna.3.1/meta.yaml b/recipes/bioconductor-pd.mirna.3.1/meta.yaml
index e968576995635..5efcf883ca1ee 100644
--- a/recipes/bioconductor-pd.mirna.3.1/meta.yaml
+++ b/recipes/bioconductor-pd.mirna.3.1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.8.1" %}
 {% set name = "pd.mirna.3.1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,30 +13,31 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 296b3584ee5e9416c9018353d3e29c6c
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.mirna.3.1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - 'r-rsqlite >=0.11.1'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - 'r-rsqlite >=0.11.1'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.mirna.4.0/meta.yaml b/recipes/bioconductor-pd.mirna.4.0/meta.yaml
index 14517e4896b52..a3ad36ee6f9cf 100644
--- a/recipes/bioconductor-pd.mirna.4.0/meta.yaml
+++ b/recipes/bioconductor-pd.mirna.4.0/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.mirna.4.0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: cae1a18c02aaa20a2f05172103e9d938
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.mirna.4.0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.moe430a/meta.yaml b/recipes/bioconductor-pd.moe430a/meta.yaml
index 70887f8731119..e9ab0dd8f57dd 100644
--- a/recipes/bioconductor-pd.moe430a/meta.yaml
+++ b/recipes/bioconductor-pd.moe430a/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.moe430a" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: f9a7cb62140e42c2a82177548a1c73fb
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.moe430a", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.moe430b/meta.yaml b/recipes/bioconductor-pd.moe430b/meta.yaml
index 2cfad28753931..72a0e356ab58c 100644
--- a/recipes/bioconductor-pd.moe430b/meta.yaml
+++ b/recipes/bioconductor-pd.moe430b/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.moe430b" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: c19d2ee5e7e87703cf73afa33a5f3156
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.moe430b", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.moex.1.0.st.v1/meta.yaml b/recipes/bioconductor-pd.moex.1.0.st.v1/meta.yaml
index 14aee2e8a08a6..d83f930bddeed 100644
--- a/recipes/bioconductor-pd.moex.1.0.st.v1/meta.yaml
+++ b/recipes/bioconductor-pd.moex.1.0.st.v1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.1" %}
 {% set name = "pd.moex.1.0.st.v1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 57427e63b2d44258c12d796eada1897b
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.moex.1.0.st.v1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.mogene.1.0.st.v1/meta.yaml b/recipes/bioconductor-pd.mogene.1.0.st.v1/meta.yaml
index e452a31afec54..890fc6f4cb1c6 100644
--- a/recipes/bioconductor-pd.mogene.1.0.st.v1/meta.yaml
+++ b/recipes/bioconductor-pd.mogene.1.0.st.v1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.1" %}
 {% set name = "pd.mogene.1.0.st.v1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: c3767385af3b9a120c777adb6d6e3364
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.mogene.1.0.st.v1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.mogene.1.1.st.v1/meta.yaml b/recipes/bioconductor-pd.mogene.1.1.st.v1/meta.yaml
index c541512b2793c..09713fc997bd3 100644
--- a/recipes/bioconductor-pd.mogene.1.1.st.v1/meta.yaml
+++ b/recipes/bioconductor-pd.mogene.1.1.st.v1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.1" %}
 {% set name = "pd.mogene.1.1.st.v1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 3d6c5d29e4d8a0b0152e109b68f82c37
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.mogene.1.1.st.v1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.mogene.2.0.st/meta.yaml b/recipes/bioconductor-pd.mogene.2.0.st/meta.yaml
index 0cd167f8e7dea..9c9a7d684131a 100644
--- a/recipes/bioconductor-pd.mogene.2.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.mogene.2.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.1" %}
 {% set name = "pd.mogene.2.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 71326d6bd85de02490171696f923d053
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.mogene.2.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.mogene.2.1.st/meta.yaml b/recipes/bioconductor-pd.mogene.2.1.st/meta.yaml
index aef43e3a54ceb..499af455820e9 100644
--- a/recipes/bioconductor-pd.mogene.2.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.mogene.2.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.1" %}
 {% set name = "pd.mogene.2.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 2c7fc5644eae98359cb945ff16d072a2
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.mogene.2.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.mouse430.2/meta.yaml b/recipes/bioconductor-pd.mouse430.2/meta.yaml
index 6064430c2092b..205b87d6bbb36 100644
--- a/recipes/bioconductor-pd.mouse430.2/meta.yaml
+++ b/recipes/bioconductor-pd.mouse430.2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.mouse430.2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 7f37397a57b06d15101ef86fa6242ca4
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.mouse430.2", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.mouse430a.2/meta.yaml b/recipes/bioconductor-pd.mouse430a.2/meta.yaml
index e3e97c992a487..328c8998bd334 100644
--- a/recipes/bioconductor-pd.mouse430a.2/meta.yaml
+++ b/recipes/bioconductor-pd.mouse430a.2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.mouse430a.2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 0c28f564a1fa23f59c936d42c156796d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.mouse430a.2", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.mta.1.0/meta.yaml b/recipes/bioconductor-pd.mta.1.0/meta.yaml
index e0a52461a85e0..7deeae0d5bdfb 100644
--- a/recipes/bioconductor-pd.mta.1.0/meta.yaml
+++ b/recipes/bioconductor-pd.mta.1.0/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.mta.1.0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 0f737b4f1f1353733e56e2df637f554b
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.mta.1.0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.mu11ksuba/meta.yaml b/recipes/bioconductor-pd.mu11ksuba/meta.yaml
index 6d8393f88932e..94eb4e26e996d 100644
--- a/recipes/bioconductor-pd.mu11ksuba/meta.yaml
+++ b/recipes/bioconductor-pd.mu11ksuba/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.mu11ksuba" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 56be58b3f444ccb9572dc4c3882964b2
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.mu11ksuba", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.mu11ksubb/meta.yaml b/recipes/bioconductor-pd.mu11ksubb/meta.yaml
index 250416e090676..11001e1c78fc9 100644
--- a/recipes/bioconductor-pd.mu11ksubb/meta.yaml
+++ b/recipes/bioconductor-pd.mu11ksubb/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.mu11ksubb" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: c45b0ebe777b99cec38499826cc1b457
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.mu11ksubb", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.nugo.hs1a520180/meta.yaml b/recipes/bioconductor-pd.nugo.hs1a520180/meta.yaml
index 0ceee2111c0df..104d2cb3a3b15 100644
--- a/recipes/bioconductor-pd.nugo.hs1a520180/meta.yaml
+++ b/recipes/bioconductor-pd.nugo.hs1a520180/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.4.0" %}
 {% set name = "pd.nugo.hs1a520180" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 88a836472f0f9aab2e1d54e4bad7d6af
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.nugo.hs1a520180", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.nugo.mm1a520177/meta.yaml b/recipes/bioconductor-pd.nugo.mm1a520177/meta.yaml
index 4492a301ca5b0..3114b806849f1 100644
--- a/recipes/bioconductor-pd.nugo.mm1a520177/meta.yaml
+++ b/recipes/bioconductor-pd.nugo.mm1a520177/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.4.0" %}
 {% set name = "pd.nugo.mm1a520177" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 5cd64895eaddaf4cae1c48db9468c079
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.nugo.mm1a520177", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.ovigene.1.0.st/meta.yaml b/recipes/bioconductor-pd.ovigene.1.0.st/meta.yaml
index d4123ffc506a8..0127427f2b795 100644
--- a/recipes/bioconductor-pd.ovigene.1.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.ovigene.1.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.ovigene.1.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 88cfedfe10dd357539305051a69d31a1
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.ovigene.1.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.ovigene.1.1.st/meta.yaml b/recipes/bioconductor-pd.ovigene.1.1.st/meta.yaml
index 04d4af36fef2b..1c6bc4fd9fc71 100644
--- a/recipes/bioconductor-pd.ovigene.1.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.ovigene.1.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.ovigene.1.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: d6158cacd32a1892975fddd8dc8bb3f2
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.ovigene.1.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.pae.g1a/meta.yaml b/recipes/bioconductor-pd.pae.g1a/meta.yaml
index 4d4d8c40e7ec4..78b855cedb8e9 100644
--- a/recipes/bioconductor-pd.pae.g1a/meta.yaml
+++ b/recipes/bioconductor-pd.pae.g1a/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.pae.g1a" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: d96462eb35c63b30772bccae2a27a8cd
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.pae.g1a", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.plasmodium.anopheles/meta.yaml b/recipes/bioconductor-pd.plasmodium.anopheles/meta.yaml
index 6f3fd0d8d595d..5db40654cc0d4 100644
--- a/recipes/bioconductor-pd.plasmodium.anopheles/meta.yaml
+++ b/recipes/bioconductor-pd.plasmodium.anopheles/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.plasmodium.anopheles" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: ae55b1451ceaed951f68213c0433f3d0
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.plasmodium.anopheles", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.poplar/meta.yaml b/recipes/bioconductor-pd.poplar/meta.yaml
index 725ba844d814a..56d765944b6ab 100644
--- a/recipes/bioconductor-pd.poplar/meta.yaml
+++ b/recipes/bioconductor-pd.poplar/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.poplar" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 9c33b7528e5a47654aeacf61b71058a8
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.poplar", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.porcine/meta.yaml b/recipes/bioconductor-pd.porcine/meta.yaml
index 82c47a2bdff34..3c508d25653f1 100644
--- a/recipes/bioconductor-pd.porcine/meta.yaml
+++ b/recipes/bioconductor-pd.porcine/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.porcine" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 5df404babadb1d6faef73e249c819a72
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.porcine", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.porgene.1.0.st/meta.yaml b/recipes/bioconductor-pd.porgene.1.0.st/meta.yaml
index a9f0bf892744a..60c46a620aa02 100644
--- a/recipes/bioconductor-pd.porgene.1.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.porgene.1.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.porgene.1.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 203fc56b0e2904fa7063c4a325e038f1
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.porgene.1.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.porgene.1.1.st/meta.yaml b/recipes/bioconductor-pd.porgene.1.1.st/meta.yaml
index 430150b714537..d719ca62d0871 100644
--- a/recipes/bioconductor-pd.porgene.1.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.porgene.1.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.porgene.1.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 3a31d325861925a7428241207c461a1d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.porgene.1.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.rabgene.1.0.st/meta.yaml b/recipes/bioconductor-pd.rabgene.1.0.st/meta.yaml
index 2fc33f0100628..2d107b381b133 100644
--- a/recipes/bioconductor-pd.rabgene.1.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.rabgene.1.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.rabgene.1.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 7f1e33f4767a4c4653bdaff2b79989a0
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.rabgene.1.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.rabgene.1.1.st/meta.yaml b/recipes/bioconductor-pd.rabgene.1.1.st/meta.yaml
index 364c9cedad143..4695d505632f7 100644
--- a/recipes/bioconductor-pd.rabgene.1.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.rabgene.1.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.rabgene.1.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 2492695661309f5e6628612685460ee5
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.rabgene.1.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.rae230a/meta.yaml b/recipes/bioconductor-pd.rae230a/meta.yaml
index 9ed5fd10cc095..663454610c8b4 100644
--- a/recipes/bioconductor-pd.rae230a/meta.yaml
+++ b/recipes/bioconductor-pd.rae230a/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.rae230a" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: fa4a1c29d3457b1db82b1010c5f72412
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.rae230a", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.rae230b/meta.yaml b/recipes/bioconductor-pd.rae230b/meta.yaml
index f83f7dcb76548..46e25943b634f 100644
--- a/recipes/bioconductor-pd.rae230b/meta.yaml
+++ b/recipes/bioconductor-pd.rae230b/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.rae230b" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 10e2e70bb7538119127cd65f636f93b6
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.rae230b", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.raex.1.0.st.v1/meta.yaml b/recipes/bioconductor-pd.raex.1.0.st.v1/meta.yaml
index b7e51f74b747a..519e76f5d2ad1 100644
--- a/recipes/bioconductor-pd.raex.1.0.st.v1/meta.yaml
+++ b/recipes/bioconductor-pd.raex.1.0.st.v1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.1" %}
 {% set name = "pd.raex.1.0.st.v1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: e2160b549f63ffcc9222d88d82d4d393
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.raex.1.0.st.v1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.ragene.1.0.st.v1/meta.yaml b/recipes/bioconductor-pd.ragene.1.0.st.v1/meta.yaml
index fd93c7e228cab..83bbe9f667204 100644
--- a/recipes/bioconductor-pd.ragene.1.0.st.v1/meta.yaml
+++ b/recipes/bioconductor-pd.ragene.1.0.st.v1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.1" %}
 {% set name = "pd.ragene.1.0.st.v1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 122cb69603e705218d01d70f48e90cad
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.ragene.1.0.st.v1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.ragene.1.1.st.v1/meta.yaml b/recipes/bioconductor-pd.ragene.1.1.st.v1/meta.yaml
index d5b1e4f5f14b0..7acf2c90841f4 100644
--- a/recipes/bioconductor-pd.ragene.1.1.st.v1/meta.yaml
+++ b/recipes/bioconductor-pd.ragene.1.1.st.v1/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.1" %}
 {% set name = "pd.ragene.1.1.st.v1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 7301ab6472849395ccb800c39807e969
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.ragene.1.1.st.v1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.ragene.2.0.st/meta.yaml b/recipes/bioconductor-pd.ragene.2.0.st/meta.yaml
index fe928c01c0ba1..d353b093c0f97 100644
--- a/recipes/bioconductor-pd.ragene.2.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.ragene.2.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.1" %}
 {% set name = "pd.ragene.2.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 37157b09f009fef368b54e47711c313b
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.ragene.2.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.ragene.2.1.st/meta.yaml b/recipes/bioconductor-pd.ragene.2.1.st/meta.yaml
index e57d364d6bd4e..97f536d4fe7f2 100644
--- a/recipes/bioconductor-pd.ragene.2.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.ragene.2.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.1" %}
 {% set name = "pd.ragene.2.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 53adfa5ff2c7e466da83b807dbc7b237
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.ragene.2.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.rat230.2/meta.yaml b/recipes/bioconductor-pd.rat230.2/meta.yaml
index 2e706cdde08a6..b9a674841bfcf 100644
--- a/recipes/bioconductor-pd.rat230.2/meta.yaml
+++ b/recipes/bioconductor-pd.rat230.2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.rat230.2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 286b1a7868ef6c795ebeb6dd8a5d5920
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.rat230.2", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.rcngene.1.0.st/meta.yaml b/recipes/bioconductor-pd.rcngene.1.0.st/meta.yaml
index 6ea3f356da10a..9200e31904ff5 100644
--- a/recipes/bioconductor-pd.rcngene.1.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.rcngene.1.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.rcngene.1.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 9c7c5ef4d4f5ed92d9130d77a99a0685
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.rcngene.1.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.rcngene.1.1.st/meta.yaml b/recipes/bioconductor-pd.rcngene.1.1.st/meta.yaml
index 7f3111b1fbbf6..d5109147ee4f8 100644
--- a/recipes/bioconductor-pd.rcngene.1.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.rcngene.1.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.rcngene.1.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 9781549447d90b5423e820fff5cc6273
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.rcngene.1.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.rg.u34a/meta.yaml b/recipes/bioconductor-pd.rg.u34a/meta.yaml
index 377e2433efbcc..814b06a1e7993 100644
--- a/recipes/bioconductor-pd.rg.u34a/meta.yaml
+++ b/recipes/bioconductor-pd.rg.u34a/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.rg.u34a" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: ac3a6cc203dabb8faab85b97f1a7ae3c
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.rg.u34a", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.rg.u34b/meta.yaml b/recipes/bioconductor-pd.rg.u34b/meta.yaml
index 3e06011a43a95..3bd194cf18f4d 100644
--- a/recipes/bioconductor-pd.rg.u34b/meta.yaml
+++ b/recipes/bioconductor-pd.rg.u34b/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.rg.u34b" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 757966b66795d388c7169816d31977ad
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.rg.u34b", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.rg.u34c/meta.yaml b/recipes/bioconductor-pd.rg.u34c/meta.yaml
index 58acea111a8eb..0be8eaeea6991 100644
--- a/recipes/bioconductor-pd.rg.u34c/meta.yaml
+++ b/recipes/bioconductor-pd.rg.u34c/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.rg.u34c" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: bc9cb7b208972ac2901235bdabdee5b2
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.rg.u34c", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.rhegene.1.0.st/meta.yaml b/recipes/bioconductor-pd.rhegene.1.0.st/meta.yaml
index 0a72cd95d1d5f..0b394c279d5fa 100644
--- a/recipes/bioconductor-pd.rhegene.1.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.rhegene.1.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.rhegene.1.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 6469add6928e663529df4df98fcdd7a8
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.rhegene.1.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.rhegene.1.1.st/meta.yaml b/recipes/bioconductor-pd.rhegene.1.1.st/meta.yaml
index dc6fc4ec8900f..9f7b2da4be891 100644
--- a/recipes/bioconductor-pd.rhegene.1.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.rhegene.1.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.rhegene.1.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 4f63424ab52283a95731767dce6623cd
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.rhegene.1.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.rhesus/meta.yaml b/recipes/bioconductor-pd.rhesus/meta.yaml
index e760022f0a205..168eb0a7c0836 100644
--- a/recipes/bioconductor-pd.rhesus/meta.yaml
+++ b/recipes/bioconductor-pd.rhesus/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.rhesus" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 51efcfe1384ac956ff93bf0530965054
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.rhesus", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.rice/meta.yaml b/recipes/bioconductor-pd.rice/meta.yaml
index b9ce05cd1da4f..cc3172d469287 100644
--- a/recipes/bioconductor-pd.rice/meta.yaml
+++ b/recipes/bioconductor-pd.rice/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.rice" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 9c456981b3d0b99a96ac6c71e3eb7c8a
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.rice", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.rjpgene.1.0.st/meta.yaml b/recipes/bioconductor-pd.rjpgene.1.0.st/meta.yaml
index 29985fdc1fa4f..6d55e5903b9cc 100644
--- a/recipes/bioconductor-pd.rjpgene.1.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.rjpgene.1.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.rjpgene.1.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 066f5dbacc1110e42ce4d457ad3b9306
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.rjpgene.1.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.rjpgene.1.1.st/meta.yaml b/recipes/bioconductor-pd.rjpgene.1.1.st/meta.yaml
index d72c006ebbc88..f1cce02ab6f8c 100644
--- a/recipes/bioconductor-pd.rjpgene.1.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.rjpgene.1.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.rjpgene.1.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 265503774b15e0f4e71ac53a276a80f2
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.rjpgene.1.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.rn.u34/meta.yaml b/recipes/bioconductor-pd.rn.u34/meta.yaml
index fce938a21f5ae..7ba2751df2778 100644
--- a/recipes/bioconductor-pd.rn.u34/meta.yaml
+++ b/recipes/bioconductor-pd.rn.u34/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.rn.u34" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 1728c547f1383bffab330796505119ec
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.rn.u34", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.rta.1.0/meta.yaml b/recipes/bioconductor-pd.rta.1.0/meta.yaml
index 8fbd60597c1f6..96549451b50b6 100644
--- a/recipes/bioconductor-pd.rta.1.0/meta.yaml
+++ b/recipes/bioconductor-pd.rta.1.0/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.2" %}
 {% set name = "pd.rta.1.0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 90752a892a103c7fe4cd6c86e61a61db
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.rta.1.0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.rusgene.1.0.st/meta.yaml b/recipes/bioconductor-pd.rusgene.1.0.st/meta.yaml
index 14e2235bfc16b..1377c31afcc2c 100644
--- a/recipes/bioconductor-pd.rusgene.1.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.rusgene.1.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.rusgene.1.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 0b9b00fee58ef211e041395052344483
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.rusgene.1.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.rusgene.1.1.st/meta.yaml b/recipes/bioconductor-pd.rusgene.1.1.st/meta.yaml
index 3461cf3b2f6c9..ce4353bf56c14 100644
--- a/recipes/bioconductor-pd.rusgene.1.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.rusgene.1.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.rusgene.1.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 228837c2de4a4b106806cb7f384564fa
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.rusgene.1.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.s.aureus/meta.yaml b/recipes/bioconductor-pd.s.aureus/meta.yaml
index c900149e19766..7bb76e909c429 100644
--- a/recipes/bioconductor-pd.s.aureus/meta.yaml
+++ b/recipes/bioconductor-pd.s.aureus/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.s.aureus" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: f173ae6e4316aaa2eafbde92d5868a5a
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.s.aureus", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.soybean/meta.yaml b/recipes/bioconductor-pd.soybean/meta.yaml
index 010526d295f82..9a179dc85bbc3 100644
--- a/recipes/bioconductor-pd.soybean/meta.yaml
+++ b/recipes/bioconductor-pd.soybean/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.soybean" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 6dbe167be9d40c1d9096485afb4525f0
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.soybean", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.soygene.1.0.st/meta.yaml b/recipes/bioconductor-pd.soygene.1.0.st/meta.yaml
index 072fa4b68f2a2..a347597e89b5a 100644
--- a/recipes/bioconductor-pd.soygene.1.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.soygene.1.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.soygene.1.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b264df0648ec35d04f91e0ef8e26ac95
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.soygene.1.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.soygene.1.1.st/meta.yaml b/recipes/bioconductor-pd.soygene.1.1.st/meta.yaml
index e8615e564f1ec..a1729ed3dabec 100644
--- a/recipes/bioconductor-pd.soygene.1.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.soygene.1.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.soygene.1.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 4a911a4a4b5de927fe6239e500a2993f
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.soygene.1.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.sugar.cane/meta.yaml b/recipes/bioconductor-pd.sugar.cane/meta.yaml
index ea2c076dbe86a..1ac46bfb035b6 100644
--- a/recipes/bioconductor-pd.sugar.cane/meta.yaml
+++ b/recipes/bioconductor-pd.sugar.cane/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.sugar.cane" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: bd7eb8b1a1c9ac77359358a5347330fb
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.sugar.cane", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.tomato/meta.yaml b/recipes/bioconductor-pd.tomato/meta.yaml
index 499efa24cc9b0..f934a7a17e110 100644
--- a/recipes/bioconductor-pd.tomato/meta.yaml
+++ b/recipes/bioconductor-pd.tomato/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.tomato" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: ce78f6ee43d72e017608413dd4d50580
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.tomato", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.u133.x3p/meta.yaml b/recipes/bioconductor-pd.u133.x3p/meta.yaml
index bd1109ab7bf75..8831a79d5d391 100644
--- a/recipes/bioconductor-pd.u133.x3p/meta.yaml
+++ b/recipes/bioconductor-pd.u133.x3p/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.u133.x3p" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: e3f343e32273667f851e26d7b8a7a5db
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.u133.x3p", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.vitis.vinifera/meta.yaml b/recipes/bioconductor-pd.vitis.vinifera/meta.yaml
index e5fa0473c18b9..65c61d4bfd7fd 100644
--- a/recipes/bioconductor-pd.vitis.vinifera/meta.yaml
+++ b/recipes/bioconductor-pd.vitis.vinifera/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.vitis.vinifera" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 104a8ac33a9baa25a61f953679795696
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.vitis.vinifera", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.wheat/meta.yaml b/recipes/bioconductor-pd.wheat/meta.yaml
index 7528bceb33c0b..2880ec9932dab 100644
--- a/recipes/bioconductor-pd.wheat/meta.yaml
+++ b/recipes/bioconductor-pd.wheat/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.wheat" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 38a7183c8d3b874cf62391a9e9169bb9
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.wheat", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.x.laevis.2/meta.yaml b/recipes/bioconductor-pd.x.laevis.2/meta.yaml
index 4d9af187348ba..85c3ad7eb268f 100644
--- a/recipes/bioconductor-pd.x.laevis.2/meta.yaml
+++ b/recipes/bioconductor-pd.x.laevis.2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.x.laevis.2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 32416957e3cdc11ad4dbfcd9141ff113
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.x.laevis.2", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.x.tropicalis/meta.yaml b/recipes/bioconductor-pd.x.tropicalis/meta.yaml
index 55d5ba4d4b85f..6670ccd4bafab 100644
--- a/recipes/bioconductor-pd.x.tropicalis/meta.yaml
+++ b/recipes/bioconductor-pd.x.tropicalis/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.x.tropicalis" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 79a4de91831e4b0153495e12b9c6e8d3
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.x.tropicalis", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.xenopus.laevis/meta.yaml b/recipes/bioconductor-pd.xenopus.laevis/meta.yaml
index 279aa750ba211..95dc899a279f5 100644
--- a/recipes/bioconductor-pd.xenopus.laevis/meta.yaml
+++ b/recipes/bioconductor-pd.xenopus.laevis/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.xenopus.laevis" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 6d5c2c9e8e3891770b1c6e9dcd823c0d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.xenopus.laevis", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.yeast.2/meta.yaml b/recipes/bioconductor-pd.yeast.2/meta.yaml
index aa48be6c21621..26d834b6f5f33 100644
--- a/recipes/bioconductor-pd.yeast.2/meta.yaml
+++ b/recipes/bioconductor-pd.yeast.2/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.yeast.2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 780f5139ee9cda46c9e38122538ce129
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.yeast.2", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.yg.s98/meta.yaml b/recipes/bioconductor-pd.yg.s98/meta.yaml
index 31794da957b8a..9747d83c970c7 100644
--- a/recipes/bioconductor-pd.yg.s98/meta.yaml
+++ b/recipes/bioconductor-pd.yg.s98/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.yg.s98" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: caec3e8f29918f078b2dc7c76f4a74e2
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.yg.s98", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.zebgene.1.0.st/meta.yaml b/recipes/bioconductor-pd.zebgene.1.0.st/meta.yaml
index 49fea51353521..3bb4402a2e409 100644
--- a/recipes/bioconductor-pd.zebgene.1.0.st/meta.yaml
+++ b/recipes/bioconductor-pd.zebgene.1.0.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.zebgene.1.0.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 54fcf757b8069e95dd7e2f3ff74ae050
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.zebgene.1.0.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.zebgene.1.1.st/meta.yaml b/recipes/bioconductor-pd.zebgene.1.1.st/meta.yaml
index bfb5ed075f4bc..bb23b5798ea1e 100644
--- a/recipes/bioconductor-pd.zebgene.1.1.st/meta.yaml
+++ b/recipes/bioconductor-pd.zebgene.1.1.st/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.zebgene.1.1.st" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: d87028cd9024bc33be518635cf2f48fc
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.zebgene.1.1.st", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pd.zebrafish/meta.yaml b/recipes/bioconductor-pd.zebrafish/meta.yaml
index fe16ec6bb090a..c747bdcc950f4 100644
--- a/recipes/bioconductor-pd.zebrafish/meta.yaml
+++ b/recipes/bioconductor-pd.zebrafish/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "pd.zebrafish" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,32 +13,33 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 101f09a9d9304d1d8fbcc7f4812897b1
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pd.zebrafish", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pdatk/build_failure.linux-64.yaml b/recipes/bioconductor-pdatk/build_failure.linux-64.yaml
new file mode 100644
index 0000000000000..8c604002d4745
--- /dev/null
+++ b/recipes/bioconductor-pdatk/build_failure.linux-64.yaml
@@ -0,0 +1,10 @@
+recipe_sha: 635aae6bed8d84cc4ff74353dbdc5a5f9128c7c2618b5cb2c1d55e0a4340da36  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+reason: |-
+  /opt/conda/conda-bld/bioconductor-pdatk_1702300846111/test_tmp/run_test.sh: line 7: -e: command not found
+category: |-
+  test failure
+log: |-
+  13:26:37 BIOCONDA INFO (OUT) export SRC_DIR=/opt/conda/conda-bld/bioconductor-pdatk_1702300846111/test_tmp
+  13:26:37 BIOCONDA INFO (OUT) + -e 'library('\''PDATK'\'')'
+  13:26:37 BIOCONDA INFO (OUT) /opt/conda/conda-bld/bioconductor-pdatk_1702300846111/test_tmp/run_test.sh: line 7: -e: command not found
diff --git a/recipes/bioconductor-pdatk/meta.yaml b/recipes/bioconductor-pdatk/meta.yaml
index a10c49dde85f7..e154475d539d2 100644
--- a/recipes/bioconductor-pdatk/meta.yaml
+++ b/recipes/bioconductor-pdatk/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "PDATK" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7ffb59256d71d12b3fea031e2936445a
+  md5: 7593f074493a9b3123e757f9f265d05c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pdatk", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 3.0.0), msigdbr, BiocStyle, rmarkdown, knitr, HDF5Array
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-consensusclusterplus >=1.64.0,<1.65.0'
-    - 'bioconductor-coregx >=2.4.0,<2.5.0'
-    - 'bioconductor-genefu >=2.32.0,<2.33.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-piano >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-survcomp >=1.50.0,<1.51.0'
-    - 'bioconductor-switchbox >=1.36.0,<1.37.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-consensusclusterplus >=1.66.0,<1.67.0'
+    - 'bioconductor-coregx >=2.6.0,<2.7.0'
+    - 'bioconductor-genefu >=2.34.0,<2.35.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-piano >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-survcomp >=1.52.0,<1.53.0'
+    - 'bioconductor-switchbox >=1.38.0,<1.39.0'
     - r-base
     - r-caret
     - r-clusterrepro
@@ -52,18 +53,18 @@ requirements:
     - r-survminer
     - r-verification
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-consensusclusterplus >=1.64.0,<1.65.0'
-    - 'bioconductor-coregx >=2.4.0,<2.5.0'
-    - 'bioconductor-genefu >=2.32.0,<2.33.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-piano >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-survcomp >=1.50.0,<1.51.0'
-    - 'bioconductor-switchbox >=1.36.0,<1.37.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-consensusclusterplus >=1.66.0,<1.67.0'
+    - 'bioconductor-coregx >=2.6.0,<2.7.0'
+    - 'bioconductor-genefu >=2.34.0,<2.35.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-piano >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-survcomp >=1.52.0,<1.53.0'
+    - 'bioconductor-switchbox >=1.38.0,<1.39.0'
     - r-base
     - r-caret
     - r-clusterrepro
@@ -84,11 +85,11 @@ requirements:
     - r-verification
 test:
   commands:
-    - 'R -e "library(''{{ name }}'')"'
+    - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: 'MIT + file LICENSE'
   summary: 'Pancreatic Ductal Adenocarcinoma Tool-Kit'
-  description: 'Pancreatic ductal adenocarcinoma (PDA) has a relatively poor prognosis and is one of the most lethal cancers. Molecular classification of gene expression profiles holds the potential to identify meaningful subtypes which can inform therapeutic strategy in the clinical setting. The Pancreatic Cancer Adenocarcinoma Tool-Kit (PDATK) provides an S4 class-based interface for performing unsupervised subtype discovery, cross-cohort meta-clustering, gene-expression-based classification, and subsequent survival analysis to identify prognostically useful subtypes in pancreatic cancer and beyond. Two novel methods, Consensus Subtypes in Pancreatic Cancer (CSPC) and Pancreatic Cancer Overall Survival Predictor (PCOSP) are included for consensus-based meta-clustering and overall-survival prediction, respectively. Additionally, four published subtype classifiers and three published prognostic gene signatures are included to allow users to easily recreate published results, apply existing classifiers to new data, and benchmark the relative performance of new methods. The use of existing Bioconductor classes as input to all PDATK classes and methods enables integration with existing Bioconductor datasets, including the 21 pancreatic cancer patient cohorts available in the MetaGxPancreas data package. PDATK has been used to replicate results from Sandhu et al (2019) and an additional paper is in the works using CSPC to validate subtypes from the included published classifiers, both of which use the data available in MetaGxPancreas. The inclusion of subtype centroids and prognostic gene signatures from these and other publications will enable researchers and clinicians to classify novel patient gene expression data, allowing the direct clinical application of the classifiers included in PDATK. Overall, PDATK provides a rich set of tools to identify and validate useful prognostic and molecular subtypes based on gene-expression data, benchmark new classifiers against existing ones, and apply discovered classifiers on novel patient data to inform clinical decision making.'
+  description: 'Pancreatic ductal adenocarcinoma (PDA) has a relatively poor prognosis and is one of the most lethal cancers. Molecular classification of gene expression profiles holds the potential to identify meaningful subtypes which can inform therapeutic strategy in the clinical setting. The Pancreatic Cancer Adenocarcinoma Tool-Kit (PDATK) provides an S4 class-based interface for performing unsupervised subtype discovery, cross-cohort meta-clustering, gene-expression-based classification, and subsequent survival analysis to identify prognostically useful subtypes in pancreatic cancer and beyond. Two novel methods, Consensus Subtypes in Pancreatic Cancer (CSPC) and Pancreatic Cancer Overall Survival Predictor (PCOSP) are included for consensus-based meta-clustering and overall-survival prediction, respectively. Additionally, four published subtype classifiers and three published prognostic gene signatures are included to allow users to easily recreate published results, apply existing classifiers to new data, and benchmark the relative performance of new methods. The use of existing Bioconductor classes as input to all PDATK classes and methods enables integration with existing Bioconductor datasets, including the 21 pancreatic cancer patient cohorts available in the MetaGxPancreas data package. PDATK has been used to replicate results from Sandhu et al (2019) [https://doi.org/10.1200/cci.18.00102] and an additional paper is in the works using CSPC to validate subtypes from the included published classifiers, both of which use the data available in MetaGxPancreas. The inclusion of subtype centroids and prognostic gene signatures from these and other publications will enable researchers and clinicians to classify novel patient gene expression data, allowing the direct clinical application of the classifiers included in PDATK. Overall, PDATK provides a rich set of tools to identify and validate useful prognostic and molecular subtypes based on gene-expression data, benchmark new classifiers against existing ones, and apply discovered classifiers on novel patient data to inform clinical decision making.'
   license_file: LICENSE
 
diff --git a/recipes/bioconductor-pdinfobuilder/meta.yaml b/recipes/bioconductor-pdinfobuilder/meta.yaml
index eab66da1b8744..b94711d5f3961 100644
--- a/recipes/bioconductor-pdinfobuilder/meta.yaml
+++ b/recipes/bioconductor-pdinfobuilder/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.64.0" %}
+{% set version = "1.66.0" %}
 {% set name = "pdInfoBuilder" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 46f59ac69b5b94cc24cdb49cc12d28ac
+  md5: 67c0c8df22f95792e50c1e6c4b6eba2a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pdinfobuilder", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-affxparser >=1.72.0,<1.73.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-affxparser >=1.74.0,<1.75.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
     - libblas
     - liblapack
   run:
-    - 'bioconductor-affxparser >=1.72.0,<1.73.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-affxparser >=1.74.0,<1.75.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-dbi >=0.3.1'
     - 'r-rsqlite >=1.0.0'
diff --git a/recipes/bioconductor-peacoqc/meta.yaml b/recipes/bioconductor-peacoqc/meta.yaml
index a6054ffe7608f..2a019595f29fb 100644
--- a/recipes/bioconductor-peacoqc/meta.yaml
+++ b/recipes/bioconductor-peacoqc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "PeacoQC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 35cce4a53dfc774f2606eed22e09da17
+  md5: fa296e0522b97273b692874b5ec23b97
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-peacoqc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowworkspace >=4.12.0,<4.13.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowworkspace >=4.14.0,<4.15.0'
     - r-base
     - r-circlize
     - r-ggplot2
     - r-gridextra
     - r-plyr
   run:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-flowworkspace >=4.12.0,<4.13.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-flowworkspace >=4.14.0,<4.15.0'
     - r-base
     - r-circlize
     - r-ggplot2
diff --git a/recipes/bioconductor-peakpanther/meta.yaml b/recipes/bioconductor-peakpanther/meta.yaml
index cc70a7e482192..d56a1978bcd39 100644
--- a/recipes/bioconductor-peakpanther/meta.yaml
+++ b/recipes/bioconductor-peakpanther/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "peakPantheR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 654760a5537dfdc83125d3cd253f2124
+  md5: 9753434861181af826b86fbc734b5850
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-peakpanther", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, devtools, faahKO, msdata, knitr, rmarkdown, pander, BiocStyle
 requirements:
   host:
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
     - r-base
     - r-bslib
     - 'r-doparallel >=1.0.11'
@@ -39,8 +40,8 @@ requirements:
     - 'r-stringr >=1.2.0'
     - 'r-xml >=3.98.1.10'
   run:
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
     - r-base
     - r-bslib
     - 'r-doparallel >=1.0.11'
diff --git a/recipes/bioconductor-peca/meta.yaml b/recipes/bioconductor-peca/meta.yaml
index 1884e5ed624c3..5605c4a16cf73 100644
--- a/recipes/bioconductor-peca/meta.yaml
+++ b/recipes/bioconductor-peca/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "PECA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 658444c729d969dfd2f1a3edd43d3966
+  md5: 43aed7fc555cb6ccbf70335add80f6dc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-peca", max_pin="x.x") }}'
   noarch: generic
 # Suggests: SpikeIn
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-rots >=1.28.0,<1.29.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-rots >=1.30.0,<1.31.0'
     - r-aroma.affymetrix
     - r-aroma.core
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-rots >=1.28.0,<1.29.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-rots >=1.30.0,<1.31.0'
     - r-aroma.affymetrix
     - r-aroma.core
     - r-base
diff --git a/recipes/bioconductor-peco/meta.yaml b/recipes/bioconductor-peco/meta.yaml
index 4a1b3d0fa6fe4..42ee30969da6a 100644
--- a/recipes/bioconductor-peco/meta.yaml
+++ b/recipes/bioconductor-peco/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "peco" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 47a4083ee1746cc79c437205b7eae854
+  md5: 9a15c75c989ee10da1fb0ead1bbac99f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-peco", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - r-circular
@@ -32,9 +33,9 @@ requirements:
     - r-foreach
     - 'r-genlasso >=1.4'
   run:
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - r-circular
diff --git a/recipes/bioconductor-pedbarrayv10.db/meta.yaml b/recipes/bioconductor-pedbarrayv10.db/meta.yaml
index d2a77ef59a613..1c9fa8f5fbffa 100644
--- a/recipes/bioconductor-pedbarrayv10.db/meta.yaml
+++ b/recipes/bioconductor-pedbarrayv10.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "pedbarrayv10.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 25acc3bfee229015ecca1c7d688e5168
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pedbarrayv10.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pedbarrayv9.db/meta.yaml b/recipes/bioconductor-pedbarrayv9.db/meta.yaml
index faf9c5826fd37..1d5180b7a344c 100644
--- a/recipes/bioconductor-pedbarrayv9.db/meta.yaml
+++ b/recipes/bioconductor-pedbarrayv9.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "pedbarrayv9.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: da4b2f9c0a672e0c9ee53f017bacaff7
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pedbarrayv9.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pengls/meta.yaml b/recipes/bioconductor-pengls/meta.yaml
index c1a75c82cf20b..641c32b81fdc8 100644
--- a/recipes/bioconductor-pengls/meta.yaml
+++ b/recipes/bioconductor-pengls/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "pengls" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: bb111f7ec56fb1ce6cf319a56dbc3042
+  md5: 7b4703b0839f4e46a97e208289a69345
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pengls", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr,rmarkdown,testthat
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-glmnet
     - r-nlme
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-glmnet
     - r-nlme
diff --git a/recipes/bioconductor-pepdat/meta.yaml b/recipes/bioconductor-pepdat/meta.yaml
index 89df237ee40a3..e632c11c7cf5c 100644
--- a/recipes/bioconductor-pepdat/meta.yaml
+++ b/recipes/bioconductor-pepdat/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "pepDat" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6c0f8c749db61b37d83728109a2e08df
+  md5: 4ce373369604b54b15e5992ebe9355b9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pepdat", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pepdat/post-link.sh b/recipes/bioconductor-pepdat/post-link.sh
index f398190520806..18087b8b14b2d 100644
--- a/recipes/bioconductor-pepdat/post-link.sh
+++ b/recipes/bioconductor-pepdat/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "pepdat-1.20.0"
+installBiocDataPackage.sh "pepdat-1.22.0"
diff --git a/recipes/bioconductor-pepsnmr/meta.yaml b/recipes/bioconductor-pepsnmr/meta.yaml
index 4720727dca64f..58ea6cbaff257 100644
--- a/recipes/bioconductor-pepsnmr/meta.yaml
+++ b/recipes/bioconductor-pepsnmr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "PepsNMR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 80a3c52dea0ca605a0988a664215b1a8
+  md5: afd34a264a3af86ad7aec1d6163b0aab
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pepsnmr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, markdown, rmarkdown, BiocStyle, PepsNMRData
 requirements:
diff --git a/recipes/bioconductor-pepsnmrdata/meta.yaml b/recipes/bioconductor-pepsnmrdata/meta.yaml
index ece4231e32bf7..bc0e5911ad73c 100644
--- a/recipes/bioconductor-pepsnmrdata/meta.yaml
+++ b/recipes/bioconductor-pepsnmrdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "PepsNMRData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 98f84b07316d8ec6aab7c64862c695d2
+  md5: 96fc9090499b4460f72fb85a0428b357
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pepsnmrdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, markdown, rmarkdown, BiocStyle
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pepsnmrdata/post-link.sh b/recipes/bioconductor-pepsnmrdata/post-link.sh
index f40152b399244..31aa57da37b58 100644
--- a/recipes/bioconductor-pepsnmrdata/post-link.sh
+++ b/recipes/bioconductor-pepsnmrdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "pepsnmrdata-1.18.0"
+installBiocDataPackage.sh "pepsnmrdata-1.20.0"
diff --git a/recipes/bioconductor-pepstat/meta.yaml b/recipes/bioconductor-pepstat/meta.yaml
index 553e2eb03cf16..63ce17507e1e1 100644
--- a/recipes/bioconductor-pepstat/meta.yaml
+++ b/recipes/bioconductor-pepstat/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "pepStat" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: da35a44e27569b966515d3baa63da1c1
+  md5: 031af81c6bcac97b7262d978bfda2392
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pepstat", max_pin="x.x") }}'
   noarch: generic
 # Suggests: pepDat, Pviz, knitr, shiny
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-data.table
     - r-fields
     - r-ggplot2
     - r-plyr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-data.table
     - r-fields
diff --git a/recipes/bioconductor-pepxmltab/meta.yaml b/recipes/bioconductor-pepxmltab/meta.yaml
index 967fd5813d88b..44ccd49357088 100644
--- a/recipes/bioconductor-pepxmltab/meta.yaml
+++ b/recipes/bioconductor-pepxmltab/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "pepXMLTab" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: eae67a9f54e44fbce148fb9e5077fdd0
+  md5: 71d6bcb41c5a79bc2cfdd375c6468250
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pepxmltab", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics
 requirements:
diff --git a/recipes/bioconductor-periodicdna/meta.yaml b/recipes/bioconductor-periodicdna/meta.yaml
index 8ec4ccf2ef572..d85c082208a88 100644
--- a/recipes/bioconductor-periodicdna/meta.yaml
+++ b/recipes/bioconductor-periodicdna/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "periodicDNA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,38 +11,39 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fb823cba035d96f14027fc949ba7df9b
+  md5: 60036578bc6ec2c45d1c4b57ae96ad03
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-periodicdna", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Scerevisiae.UCSC.sacCer3, BSgenome.Celegans.UCSC.ce11, BSgenome.Dmelanogaster.UCSC.dm6, BSgenome.Drerio.UCSC.danRer10, BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10, reticulate, testthat, covr, knitr, rmarkdown, pkgdown
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cowplot
     - r-ggplot2
     - r-magrittr
     - r-zoo
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cowplot
     - r-ggplot2
diff --git a/recipes/bioconductor-pfam.db/meta.yaml b/recipes/bioconductor-pfam.db/meta.yaml
index 34aaa02a5dce7..d5113df6b0741 100644
--- a/recipes/bioconductor-pfam.db/meta.yaml
+++ b/recipes/bioconductor-pfam.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "PFAM.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 729496d021868b74cbecfd156066d0e9
+  md5: f98f5d1e5d335e6bbf1ea6426cde67bb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pfam.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pfam.db/post-link.sh b/recipes/bioconductor-pfam.db/post-link.sh
index 97165541e6661..c837f5c6d710e 100644
--- a/recipes/bioconductor-pfam.db/post-link.sh
+++ b/recipes/bioconductor-pfam.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "pfam.db-3.17.0"
+installBiocDataPackage.sh "pfam.db-3.18.0"
diff --git a/recipes/bioconductor-pfamanalyzer/meta.yaml b/recipes/bioconductor-pfamanalyzer/meta.yaml
index 6f220cb9fcb37..d17c3a7853043 100644
--- a/recipes/bioconductor-pfamanalyzer/meta.yaml
+++ b/recipes/bioconductor-pfamanalyzer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.1" %}
+{% set version = "1.2.0" %}
 {% set name = "pfamAnalyzeR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1d3921913adbae5d53442475b60ee78d
+  md5: 20159a7f365760efda4827ae6fff80d3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pfamanalyzer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
diff --git a/recipes/bioconductor-pgca/meta.yaml b/recipes/bioconductor-pgca/meta.yaml
index 408fa2cd1793b..bccdf859ffd7e 100644
--- a/recipes/bioconductor-pgca/meta.yaml
+++ b/recipes/bioconductor-pgca/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "pgca" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 3285cff9d2bd68e50c1f8d51f61e22e0
+  md5: 43c58c5b347ebf060a9e6afdc8aa8e93
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pgca", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, rmarkdown
 requirements:
diff --git a/recipes/bioconductor-phantasus/meta.yaml b/recipes/bioconductor-phantasus/meta.yaml
index f7b71859045be..12893d324c41d 100644
--- a/recipes/bioconductor-phantasus/meta.yaml
+++ b/recipes/bioconductor-phantasus/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.2" %}
+{% set version = "1.22.2" %}
 {% set name = "phantasus" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 010a7126b3a72bf9c3a89e45cd789d23
+  md5: 84c6e2dce18e76a3268130cdd236ba59
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-phantasus", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
     - r-assertthat
     - r-base
     - r-ccapp
@@ -48,13 +50,14 @@ requirements:
     - r-stringr
     - r-svglite
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
     - r-assertthat
     - r-base
     - r-ccapp
diff --git a/recipes/bioconductor-phantasuslite/build.sh b/recipes/bioconductor-phantasuslite/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-phantasuslite/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-phantasuslite/meta.yaml b/recipes/bioconductor-phantasuslite/meta.yaml
new file mode 100644
index 0000000000000..8f7dc38016eeb
--- /dev/null
+++ b/recipes/bioconductor-phantasuslite/meta.yaml
@@ -0,0 +1,47 @@
+{% set version = "1.0.0" %}
+{% set name = "phantasusLite" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 5fe0e101ac53a89dd49e077d5fb4c07d
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-phantasuslite", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: testthat (>= 3.0.0), knitr, rmarkdown, BiocStyle, rhdf5, GEOquery
+requirements:
+  host:
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-rhdf5client >=1.24.0,<1.25.0'
+    - r-base
+    - r-data.table
+    - r-httr
+    - r-stringr
+  run:
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-rhdf5client >=1.24.0,<1.25.0'
+    - r-base
+    - r-data.table
+    - r-httr
+    - r-stringr
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'MIT + file LICENSE'
+  summary: 'Loading and annotation RNA-Seq counts matrices'
+  description: 'PhantasusLite – a lightweight package with helper functions of general interest extracted from phantasus package. In parituclar it simplifies working with public RNA-seq datasets from GEO by providing access to the remote HSDS repository with the precomputed gene counts from ARCHS4 and DEE2 projects.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-pharmacogx/meta.yaml b/recipes/bioconductor-pharmacogx/meta.yaml
index fe20c276b51b7..b3ec539112cf6 100644
--- a/recipes/bioconductor-pharmacogx/meta.yaml
+++ b/recipes/bioconductor-pharmacogx/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.4.0" %}
+{% set version = "3.6.0" %}
 {% set name = "PharmacoGx" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1a5db5607c2e34052f84c04aae7a19ca
+  md5: a786bf3c0ace641195cfb3b00823cda3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pharmacogx", max_pin="x.x") }}'
 # Suggests: pander, rmarkdown, knitr, knitcitations, crayon, testthat, markdown, BiocStyle, R.utils
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-coregx >=2.4.0,<2.5.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-coregx >=2.6.0,<2.7.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-boot
     - r-catools
@@ -43,13 +44,13 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-coregx >=2.4.0,<2.5.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-coregx >=2.6.0,<2.7.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-boot
     - r-catools
diff --git a/recipes/bioconductor-phastcons100way.ucsc.hg19/meta.yaml b/recipes/bioconductor-phastcons100way.ucsc.hg19/meta.yaml
index 1f87007d434f7..d94d17575001b 100644
--- a/recipes/bioconductor-phastcons100way.ucsc.hg19/meta.yaml
+++ b/recipes/bioconductor-phastcons100way.ucsc.hg19/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.7.2" %}
 {% set name = "phastCons100way.UCSC.hg19" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,30 +13,31 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 65aa706a567f7e328dbba0095f995cf1
 build:
-  number: 13
+  number: 14
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-phastcons100way.ucsc.hg19", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-phastcons100way.ucsc.hg38/meta.yaml b/recipes/bioconductor-phastcons100way.ucsc.hg38/meta.yaml
index 0f97e217028b1..bfb7828fb7da6 100644
--- a/recipes/bioconductor-phastcons100way.ucsc.hg38/meta.yaml
+++ b/recipes/bioconductor-phastcons100way.ucsc.hg38/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.7.1" %}
 {% set name = "phastCons100way.UCSC.hg38" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,30 +13,31 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 878c757f9270b3410d11e4e4a4213c8e
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-phastcons100way.ucsc.hg38", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-phastcons30way.ucsc.hg38/meta.yaml b/recipes/bioconductor-phastcons30way.ucsc.hg38/meta.yaml
index 26e57dffe6ed9..c1311660034c3 100644
--- a/recipes/bioconductor-phastcons30way.ucsc.hg38/meta.yaml
+++ b/recipes/bioconductor-phastcons30way.ucsc.hg38/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "phastCons30way.UCSC.hg38" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 754faee8463bc494c502540cb8f6ea8d
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-phastcons30way.ucsc.hg38", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-phastcons35way.ucsc.mm39/meta.yaml b/recipes/bioconductor-phastcons35way.ucsc.mm39/meta.yaml
index f874908947d57..1cd646da27c64 100644
--- a/recipes/bioconductor-phastcons35way.ucsc.mm39/meta.yaml
+++ b/recipes/bioconductor-phastcons35way.ucsc.mm39/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.16.0" %}
 {% set name = "phastCons35way.UCSC.mm39" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 83fc2a2265bc341b6a00064a1286b5bc
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-phastcons35way.ucsc.mm39", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-phastcons7way.ucsc.hg38/meta.yaml b/recipes/bioconductor-phastcons7way.ucsc.hg38/meta.yaml
index 2fc48c1d9f445..8584071542d60 100644
--- a/recipes/bioconductor-phastcons7way.ucsc.hg38/meta.yaml
+++ b/recipes/bioconductor-phastcons7way.ucsc.hg38/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.7.1" %}
 {% set name = "phastCons7way.UCSC.hg38" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,30 +13,31 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: c2d87446b022c166c1c325ea2aef521d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-phastcons7way.ucsc.hg38", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-phemd/meta.yaml b/recipes/bioconductor-phemd/meta.yaml
index 323cf23e779a4..ea542cdc06cb2 100644
--- a/recipes/bioconductor-phemd/meta.yaml
+++ b/recipes/bioconductor-phemd/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "phemd" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f2f4325b02cd7c6b4c96b69de58ec50a
+  md5: 8cefd4ddfea1dd2deb007acb6cebfb7a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-phemd", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr
+# Suggests: knitr, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-destiny >=3.14.0,<3.15.0'
-    - 'bioconductor-monocle >=2.28.0,<2.29.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-destiny >=3.16.0,<3.17.0'
+    - 'bioconductor-monocle >=2.30.0,<2.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cluster
     - r-cowplot
@@ -46,13 +47,13 @@ requirements:
     - r-transport
     - r-vgam
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-destiny >=3.14.0,<3.15.0'
-    - 'bioconductor-monocle >=2.28.0,<2.29.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-destiny >=3.16.0,<3.17.0'
+    - 'bioconductor-monocle >=2.30.0,<2.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cluster
     - r-cowplot
diff --git a/recipes/bioconductor-phenogeneranker/meta.yaml b/recipes/bioconductor-phenogeneranker/meta.yaml
index b423258bb8175..930e12d2e9963 100644
--- a/recipes/bioconductor-phenogeneranker/meta.yaml
+++ b/recipes/bioconductor-phenogeneranker/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "PhenoGeneRanker" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c54470bf5e606eb9b28ba81ac9250305
+  md5: a6530ed180fae6b4250bc56d3de24e19
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-phenogeneranker", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
diff --git a/recipes/bioconductor-phenomis/meta.yaml b/recipes/bioconductor-phenomis/meta.yaml
index 02939aac0a470..7d1a1238da6ff 100644
--- a/recipes/bioconductor-phenomis/meta.yaml
+++ b/recipes/bioconductor-phenomis/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "phenomis" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 68bcdad2f28989d9cf025744aa994e91
+  md5: 6fc3be4aed9fead1f2038fb3d2837854
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-phenomis", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, BiocStyle, biosigner, CLL, knitr, omicade4, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biodb >=1.8.0,<1.9.0'
-    - 'bioconductor-biodbchebi >=1.6.0,<1.7.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-multidataset >=1.28.0,<1.29.0'
-    - 'bioconductor-ropls >=1.32.0,<1.33.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biodb >=1.10.0,<1.11.0'
+    - 'bioconductor-biodbchebi >=1.8.0,<1.9.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-multidataset >=1.30.0,<1.31.0'
+    - 'bioconductor-ropls >=1.34.0,<1.35.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-futile.logger
@@ -44,14 +45,14 @@ requirements:
     - r-tidyr
     - r-venndiagram
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biodb >=1.8.0,<1.9.0'
-    - 'bioconductor-biodbchebi >=1.6.0,<1.7.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-multidataset >=1.28.0,<1.29.0'
-    - 'bioconductor-ropls >=1.32.0,<1.33.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biodb >=1.10.0,<1.11.0'
+    - 'bioconductor-biodbchebi >=1.8.0,<1.9.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-multidataset >=1.30.0,<1.31.0'
+    - 'bioconductor-ropls >=1.34.0,<1.35.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-futile.logger
diff --git a/recipes/bioconductor-phenopath/meta.yaml b/recipes/bioconductor-phenopath/meta.yaml
index 2079195f58ac1..bc3a0995ad613 100644
--- a/recipes/bioconductor-phenopath/meta.yaml
+++ b/recipes/bioconductor-phenopath/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "phenopath" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,16 +11,17 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d5602a76199cdbdc31210788b9569c72
+  md5: 1bbbcb87efbf78aa39ee07851d27f498
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-phenopath", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, forcats, testthat, BiocStyle, SingleCellExperiment
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -30,7 +31,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-phenotest/meta.yaml b/recipes/bioconductor-phenotest/meta.yaml
index ed39526f9108c..58b9a36220404 100644
--- a/recipes/bioconductor-phenotest/meta.yaml
+++ b/recipes/bioconductor-phenotest/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "phenoTest" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cedbc33a7165cbb547d8bf62db8de022
+  md5: 20bd295654c25854160e8a1aad42d8e8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-phenotest", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GSEABase, GO.db
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-category >=2.66.0,<2.67.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-heatplus >=3.8.0,<3.9.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-category >=2.68.0,<2.69.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-heatplus >=3.10.0,<3.11.0'
     - 'bioconductor-hgu133a.db >=3.13.0,<3.14.0'
-    - 'bioconductor-hopach >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-hopach >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-bma
     - r-ellipse
@@ -42,17 +43,17 @@ requirements:
     - r-survival
     - r-xtable
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-category >=2.66.0,<2.67.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-heatplus >=3.8.0,<3.9.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-category >=2.68.0,<2.69.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-heatplus >=3.10.0,<3.11.0'
     - 'bioconductor-hgu133a.db >=3.13.0,<3.14.0'
-    - 'bioconductor-hopach >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-hopach >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-bma
     - r-ellipse
diff --git a/recipes/bioconductor-phenstat/meta.yaml b/recipes/bioconductor-phenstat/meta.yaml
index 0da5e272bc69f..c766d7ff7dc15 100644
--- a/recipes/bioconductor-phenstat/meta.yaml
+++ b/recipes/bioconductor-phenstat/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.36.0" %}
+{% set version = "2.38.0" %}
 {% set name = "PhenStat" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 73057858116719f9411fe66000677aa2
+  md5: f28cba815b5f6e8b3350c926d1d05907
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-phenstat", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-car
     - r-corrplot
@@ -37,7 +38,7 @@ requirements:
     - r-reshape
     - r-smoothwin
   run:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-car
     - r-corrplot
diff --git a/recipes/bioconductor-philr/meta.yaml b/recipes/bioconductor-philr/meta.yaml
index afea06135912c..225cd7a47bc4c 100644
--- a/recipes/bioconductor-philr/meta.yaml
+++ b/recipes/bioconductor-philr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "philr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 16ca92ff095dc3125adfee5cc63a6177
+  md5: d55e931af78335bd6378fba38c5f54a8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-philr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, ecodist, rmarkdown, BiocStyle, phyloseq, SummarizedExperiment, TreeSummarizedExperiment, glmnet, dplyr, mia
 requirements:
   host:
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
     - r-ape
     - r-base
     - r-ggplot2
     - r-phangorn
     - r-tidyr
   run:
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
     - r-ape
     - r-base
     - r-ggplot2
diff --git a/recipes/bioconductor-phipdata/meta.yaml b/recipes/bioconductor-phipdata/meta.yaml
index b34c62b91219d..2c96fe878d6dc 100644
--- a/recipes/bioconductor-phipdata/meta.yaml
+++ b/recipes/bioconductor-phipdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "PhIPData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ac34fb97c8b145805e1e0d3b876c21e8
+  md5: fdb81e6f685727bbbe4584f42ca33797
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-phipdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, testthat, knitr, rmarkdown, covr, dplyr, readr, withr
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cli
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cli
 test:
diff --git a/recipes/bioconductor-phosphonormalizer/meta.yaml b/recipes/bioconductor-phosphonormalizer/meta.yaml
index 4a77350d28cf3..83fa2d9b82923 100644
--- a/recipes/bioconductor-phosphonormalizer/meta.yaml
+++ b/recipes/bioconductor-phosphonormalizer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "phosphonormalizer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f61fb102338add2c5407d1cf9ea82feb
+  md5: b0146ac595b90e20d854404e6fa427bb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-phosphonormalizer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat
 requirements:
diff --git a/recipes/bioconductor-phosr/meta.yaml b/recipes/bioconductor-phosr/meta.yaml
index f7e0eec29e307..c27015e7252dc 100644
--- a/recipes/bioconductor-phosr/meta.yaml
+++ b/recipes/bioconductor-phosr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "PhosR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 378bad4ffeacf7daaac34ba1f3dfafb7
+  md5: 49f34b9174257536ac2a912530d69d10
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-phosr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rgl, sna, ClueR, directPA, rmarkdown, org.Rn.eg.db, org.Mm.eg.db, reactome.db, annotate, BiocStyle, stringr, calibrate
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-dendextend
@@ -47,12 +48,12 @@ requirements:
     - r-stringi
     - r-tidyr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-dendextend
diff --git a/recipes/bioconductor-phylop35way.ucsc.mm39/meta.yaml b/recipes/bioconductor-phylop35way.ucsc.mm39/meta.yaml
index 8ff0e9d94e577..891cac36e766a 100644
--- a/recipes/bioconductor-phylop35way.ucsc.mm39/meta.yaml
+++ b/recipes/bioconductor-phylop35way.ucsc.mm39/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.16.0" %}
 {% set name = "phyloP35way.UCSC.mm39" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 2c34eef5f20eace04efd47673cdf1062
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-phylop35way.ucsc.mm39", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-phyloprofile/meta.yaml b/recipes/bioconductor-phyloprofile/meta.yaml
index 0cece8597d94a..c9851553e3706 100644
--- a/recipes/bioconductor-phyloprofile/meta.yaml
+++ b/recipes/bioconductor-phyloprofile/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.5" %}
+{% set version = "1.16.0" %}
 {% set name = "PhyloProfile" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cd16fd6e4d6e6ed690b6780e2b381508
+  md5: 96200a149b95297ba34dee53963493a1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-phyloprofile", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-biodist >=1.72.0,<1.73.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-omadb >=2.16.0,<2.17.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-biodist >=1.74.0,<1.75.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-omadb >=2.18.0,<2.19.0'
     - r-ape
     - r-base
     - r-colourpicker
@@ -40,17 +41,19 @@ requirements:
     - r-rcurl
     - r-shiny
     - r-shinybs
+    - r-shinycssloaders
     - r-shinyfiles
     - r-shinyjs
+    - r-stringr
     - r-xml2
     - r-yaml
     - r-zoo
   run:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-biodist >=1.72.0,<1.73.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-omadb >=2.16.0,<2.17.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-biodist >=1.74.0,<1.75.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-omadb >=2.18.0,<2.19.0'
     - r-ape
     - r-base
     - r-colourpicker
@@ -65,8 +68,10 @@ requirements:
     - r-rcurl
     - r-shiny
     - r-shinybs
+    - r-shinycssloaders
     - r-shinyfiles
     - r-shinyjs
+    - r-stringr
     - r-xml2
     - r-yaml
     - r-zoo
diff --git a/recipes/bioconductor-phyloprofiledata/meta.yaml b/recipes/bioconductor-phyloprofiledata/meta.yaml
index 4cf4ebb33acf0..f08883286f7df 100644
--- a/recipes/bioconductor-phyloprofiledata/meta.yaml
+++ b/recipes/bioconductor-phyloprofiledata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "PhyloProfileData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3be065a86910a062e9b63540157ff949
+  md5: 68dda32e9151c0aba4eb5b29c0313f83
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-phyloprofiledata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, markdown
 requirements:
   host:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-phyloprofiledata/post-link.sh b/recipes/bioconductor-phyloprofiledata/post-link.sh
index 967b824fdd6e4..7f47b649e3562 100644
--- a/recipes/bioconductor-phyloprofiledata/post-link.sh
+++ b/recipes/bioconductor-phyloprofiledata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "phyloprofiledata-1.14.0"
+installBiocDataPackage.sh "phyloprofiledata-1.16.0"
diff --git a/recipes/bioconductor-phyloseq/meta.yaml b/recipes/bioconductor-phyloseq/meta.yaml
index 1da612a78b6e4..816a5356e24c3 100644
--- a/recipes/bioconductor-phyloseq/meta.yaml
+++ b/recipes/bioconductor-phyloseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.44.0" %}
+{% set version = "1.46.0" %}
 {% set name = "phyloseq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c159f15cbf12ce81298c1b4d1d1fe43b
+  md5: 335dc9dedba529ce34669dd881127e7c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-phyloseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle (>= 2.4), DESeq2 (>= 1.16.1), genefilter (>= 1.58), knitr (>= 1.16), magrittr (>= 1.5), metagenomeSeq (>= 1.14), rmarkdown (>= 1.6), testthat (>= 1.0.2)
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomformat >=1.28.0,<1.29.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomformat >=1.30.0,<1.31.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - 'r-ade4 >=1.7-4'
     - 'r-ape >=5.0'
     - r-base
@@ -39,11 +40,11 @@ requirements:
     - 'r-scales >=0.4.0'
     - 'r-vegan >=2.5'
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomformat >=1.28.0,<1.29.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomformat >=1.30.0,<1.31.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - 'r-ade4 >=1.7-4'
     - 'r-ape >=5.0'
     - r-base
diff --git a/recipes/bioconductor-pi/meta.yaml b/recipes/bioconductor-pi/meta.yaml
index 8a863f41dee2c..13cad610cab01 100644
--- a/recipes/bioconductor-pi/meta.yaml
+++ b/recipes/bioconductor-pi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.12.0" %}
+{% set version = "2.14.0" %}
 {% set name = "Pi" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b09c5d11dc5ba832eb809dc6d0009913
+  md5: cb989f0e8a3a1ab90a4a319c860ef602
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pi", max_pin="x.x") }}'
   noarch: generic
 # Suggests: foreach, doParallel, BiocStyle, knitr, rmarkdown, png, GGally, gridExtra, ggforce, fgsea, RColorBrewer, ggpubr, rtracklayer, ggbio, Gviz, data.tree, jsonlite
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-suprahex >=1.38.0,<1.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-suprahex >=1.40.0,<1.41.0'
     - r-base
     - r-caret
     - r-dnet
@@ -49,11 +50,11 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-suprahex >=1.38.0,<1.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-suprahex >=1.40.0,<1.41.0'
     - r-base
     - r-caret
     - r-dnet
diff --git a/recipes/bioconductor-piano/meta.yaml b/recipes/bioconductor-piano/meta.yaml
index 53acfc159e0f9..947eddd07883a 100644
--- a/recipes/bioconductor-piano/meta.yaml
+++ b/recipes/bioconductor-piano/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.16.0" %}
+{% set version = "2.18.0" %}
 {% set name = "piano" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 1dce4336105325c4f7200406542ba3fe
+  md5: 84b0ce2cca9fb11110bd82113e066e82
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-piano", max_pin="x.x") }}'
   noarch: generic
 # Suggests: yeast2.db, rsbml, plotrix, limma, affy, plier, affyPLM, gtools, biomaRt, snowfall, AnnotationDbi, knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
     - r-dt
     - r-gplots
@@ -37,10 +38,10 @@ requirements:
     - r-shinyjs
     - r-visnetwork
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
     - r-dt
     - r-gplots
diff --git a/recipes/bioconductor-pickgene/meta.yaml b/recipes/bioconductor-pickgene/meta.yaml
index e320a7ba7ddca..2ac35c4ab1be0 100644
--- a/recipes/bioconductor-pickgene/meta.yaml
+++ b/recipes/bioconductor-pickgene/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "pickgene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 70c09c4cc929410aca20e9a4c1aae523
+  md5: 250b3649eff783447f1d2c34f67bf3ca
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pickgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-pics/meta.yaml b/recipes/bioconductor-pics/meta.yaml
index 7ba57e9eb4425..29900a517454a 100644
--- a/recipes/bioconductor-pics/meta.yaml
+++ b/recipes/bioconductor-pics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.44.0" %}
+{% set version = "2.46.0" %}
 {% set name = "PICS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: efd0dc25199e80b8b905bc5cb4043400
+  md5: 04ed3fdb7f1db15654e9974438495e43
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pics", max_pin="x.x") }}'
 # Suggests: rtracklayer, parallel, knitr
+# SystemRequirements: gsl
 requirements:
   host:
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - libblas
     - liblapack
+    - gsl
   run:
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
+    - gsl
   build:
     - {{ compiler('c') }}
     - automake
diff --git a/recipes/bioconductor-pig.db0/meta.yaml b/recipes/bioconductor-pig.db0/meta.yaml
index 04e11d645142e..15e8ede99ee85 100644
--- a/recipes/bioconductor-pig.db0/meta.yaml
+++ b/recipes/bioconductor-pig.db0/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "pig.db0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d4ea227fc9495dc815bb3ad2387a7e26
+  md5: 85aaccdbdb969825957db45db3fb7801
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pig.db0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pig.db0/post-link.sh b/recipes/bioconductor-pig.db0/post-link.sh
index 0b4239037a5b6..ccf6ee98e3660 100644
--- a/recipes/bioconductor-pig.db0/post-link.sh
+++ b/recipes/bioconductor-pig.db0/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "pig.db0-3.17.0"
+installBiocDataPackage.sh "pig.db0-3.18.0"
diff --git a/recipes/bioconductor-pigengene/meta.yaml b/recipes/bioconductor-pigengene/meta.yaml
index c0adf6351ca07..6200d1de33d16 100644
--- a/recipes/bioconductor-pigengene/meta.yaml
+++ b/recipes/bioconductor-pigengene/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "Pigengene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e8dfb7f626a2cf129ffce0986a6ee6c9
+  md5: 2d7b090a6d6fad6cf62c987970663167
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pigengene", max_pin="x.x") }}'
   noarch: generic
 # Suggests: org.Hs.eg.db (>= 3.7.0), org.Mm.eg.db (>= 3.7.0), biomaRt (>= 2.30.0), knitr, AnnotationDbi, energy
 requirements:
   host:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-reactomepa >=1.44.0,<1.45.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-reactomepa >=1.46.0,<1.47.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - 'r-bnlearn >=4.7'
     - 'r-c50 >=0.1.2'
@@ -44,15 +45,15 @@ requirements:
     - 'r-pheatmap >=1.0.8'
     - r-wgcna
   run:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-reactomepa >=1.44.0,<1.45.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-reactomepa >=1.46.0,<1.47.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - 'r-bnlearn >=4.7'
     - 'r-c50 >=0.1.2'
diff --git a/recipes/bioconductor-ping/meta.yaml b/recipes/bioconductor-ping/meta.yaml
index 90020f35dd6a7..05e5b3f99f186 100644
--- a/recipes/bioconductor-ping/meta.yaml
+++ b/recipes/bioconductor-ping/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.44.0" %}
+{% set version = "2.46.0" %}
 {% set name = "PING" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c30c9725a93000736ebb0e890f6efc44
+  md5: 703e11e3d890a3cf2b48c15d4c76ea87
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ping", max_pin="x.x") }}'
 # Suggests: parallel, ShortRead, rtracklayer
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-pics >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-pics >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-fda
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-pics >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-pics >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-fda
   build:
diff --git a/recipes/bioconductor-pipecomp/meta.yaml b/recipes/bioconductor-pipecomp/meta.yaml
index 2133ccf7b66c8..f2a38e18004db 100644
--- a/recipes/bioconductor-pipecomp/meta.yaml
+++ b/recipes/bioconductor-pipecomp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "pipeComp" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3a2b7cb51586dade4ebeaa1d1d85c06f
+  md5: ccc688331233bccee84104cbbb9b5d81
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pipecomp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-aricode
     - r-base
     - r-circlize
@@ -49,13 +50,13 @@ requirements:
     - r-uwot
     - r-viridislite
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-aricode
     - r-base
     - r-circlize
diff --git a/recipes/bioconductor-pipeframe/meta.yaml b/recipes/bioconductor-pipeframe/meta.yaml
index 33725a2823fd5..eab0329b0160a 100644
--- a/recipes/bioconductor-pipeframe/meta.yaml
+++ b/recipes/bioconductor-pipeframe/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "pipeFrame" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 75006944af02f9c62b4e851fca8e0e0e
+  md5: 142f8d049aa03cec36050c2b0ccc87d9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pipeframe", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocManager, knitr, rtracklayer, testthat, BSgenome.Hsapiens.UCSC.hg19
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
     - r-base
     - r-digest
     - r-magrittr
     - r-rmarkdown
     - r-visnetwork
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
     - r-base
     - r-digest
     - r-magrittr
diff --git a/recipes/bioconductor-planet/meta.yaml b/recipes/bioconductor-planet/meta.yaml
index ff48e269b2eae..3b2c110ad4fd1 100644
--- a/recipes/bioconductor-planet/meta.yaml
+++ b/recipes/bioconductor-planet/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "planet" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: cee64675bce4d388dd7f348ff68900d1
+  md5: dbd74bc4dd3583d6ebbd871b251ecd6d
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-planet", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ggplot2, testthat, tidyr, scales, minfi, EpiDISH, knitr, rmarkdown
 requirements:
@@ -37,6 +38,6 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: GPL-2
   summary: 'Placental DNA methylation analysis tools'
-  description: 'This package contains R functions to infer additional biological variables to supplemental DNA methylation analysis of placental data. This includes inferring ethnicity/ancestry, gestational age, and cell composition from placental DNA methylation array (450k/850k) data. The package comes with an example processed placental dataset.'
+  description: 'This package contains R functions to predict biological variables to from placnetal DNA methylation data generated from infinium arrays. This includes inferring ethnicity/ancestry, gestational age, and cell composition from placental DNA methylation array (450k/850k) data.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2'
 
diff --git a/recipes/bioconductor-planttfhunter/meta.yaml b/recipes/bioconductor-planttfhunter/meta.yaml
index 2ab1ade95a55c..2d4836f3fc65b 100644
--- a/recipes/bioconductor-planttfhunter/meta.yaml
+++ b/recipes/bioconductor-planttfhunter/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "planttfhunter" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 95ba952e191581983529908ece129c54
+  md5: 94bf35ef27114ae40bdd4be243dfb8fe
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-planttfhunter", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, covr, sessioninfo, knitr, rmarkdown, testthat (>= 3.0.0)
 # SystemRequirements: HMMER <http://hmmer.org/>
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-plasmodiumanophelescdf/meta.yaml b/recipes/bioconductor-plasmodiumanophelescdf/meta.yaml
index 4d28ad9cf4a33..5ce91658cfd34 100644
--- a/recipes/bioconductor-plasmodiumanophelescdf/meta.yaml
+++ b/recipes/bioconductor-plasmodiumanophelescdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "plasmodiumanophelescdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 54c5c326977d6358c40cacf34cb2aca2
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-plasmodiumanophelescdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-plasmodiumanophelesprobe/meta.yaml b/recipes/bioconductor-plasmodiumanophelesprobe/meta.yaml
index a02c4b7775cd5..7a007c04ba9cd 100644
--- a/recipes/bioconductor-plasmodiumanophelesprobe/meta.yaml
+++ b/recipes/bioconductor-plasmodiumanophelesprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "plasmodiumanophelesprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 281683dab923168c2eedb7b08c528935
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-plasmodiumanophelesprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-plasmut/build.sh b/recipes/bioconductor-plasmut/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-plasmut/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-plasmut/meta.yaml b/recipes/bioconductor-plasmut/meta.yaml
new file mode 100644
index 0000000000000..7af4ecae4a8c9
--- /dev/null
+++ b/recipes/bioconductor-plasmut/meta.yaml
@@ -0,0 +1,40 @@
+{% set version = "1.0.0" %}
+{% set name = "plasmut" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
+  md5: 8681d905157c0cbb8b46e48cbe4ecde9
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-plasmut", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: knitr, rmarkdown, tidyverse, ggrepel, magrittr, qpdf, BiocStyle, biocViews, testthat (>= 3.0.0)
+requirements:
+  host:
+    - r-base
+    - r-dplyr
+    - r-tibble
+  run:
+    - r-base
+    - r-dplyr
+    - r-tibble
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'Stratifying mutations observed in cell-free DNA and white blood cells as germline, hematopoietic, or somatic'
+  description: 'A Bayesian method for quantifying the liklihood that a given plasma mutation arises from clonal hematopoesis or the underlying tumor. It requires sequencing data of the mutation in plasma and white blood cells with the number of distinct and mutant reads in both tissues. We implement a Monte Carlo importance sampling method to assess the likelihood that a mutation arises from the tumor relative to non-tumor origin.'
+
diff --git a/recipes/bioconductor-plgem/meta.yaml b/recipes/bioconductor-plgem/meta.yaml
index 4b7ee6e985e04..2bc338a763d0a 100644
--- a/recipes/bioconductor-plgem/meta.yaml
+++ b/recipes/bioconductor-plgem/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "plgem" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 384f0e272bf6bca492d6b6fa3b10bbc6
+  md5: caa3e3fe048da49643b34bde9fcb834a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-plgem", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-mass
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-mass
 test:
diff --git a/recipes/bioconductor-plier/meta.yaml b/recipes/bioconductor-plier/meta.yaml
index 7efe1ff38926d..55b9c161f346c 100644
--- a/recipes/bioconductor-plier/meta.yaml
+++ b/recipes/bioconductor-plier/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.70.0" %}
+{% set version = "1.72.0" %}
 {% set name = "plier" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 3ada0e5da50940e184dd56e4f15c2aac
+  md5: f16a09bf8bccc7f5596d55ed0577a593
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-plier", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-plogo2/meta.yaml b/recipes/bioconductor-plogo2/meta.yaml
index 47f580c06cbc6..0b50bf78d9598 100644
--- a/recipes/bioconductor-plogo2/meta.yaml
+++ b/recipes/bioconductor-plogo2/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "PloGO2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3c885f0334d65006c9d06c9670f337b8
+  md5: a9d28e5ed4822c97721db2c841ce3eec
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-plogo2", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
     - r-base
     - r-httr
     - r-lattice
     - r-openxlsx
     - r-xtable
   run:
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
     - r-base
     - r-httr
     - r-lattice
diff --git a/recipes/bioconductor-plotgardener/meta.yaml b/recipes/bioconductor-plotgardener/meta.yaml
index 2862ea7a65f6a..e7cb36e9c2ed0 100644
--- a/recipes/bioconductor-plotgardener/meta.yaml
+++ b/recipes/bioconductor-plotgardener/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.2" %}
+{% set version = "1.8.1" %}
 {% set name = "plotgardener" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 08318dcfcb24afd0efc11e1cd81dd7a6
+  md5: 7459452ce71af8384d3df8340a7c3db0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-plotgardener", max_pin="x.x") }}'
 # Suggests: AnnotationDbi, AnnotationHub, BSgenome, BSgenome.Hsapiens.UCSC.hg19, ComplexHeatmap, GenomicFeatures, GenomeInfoDb, GenomicRanges, ggplot2, InteractionSet, knitr, org.Hs.eg.db, rtracklayer, plotgardenerData, pdftools, png, rmarkdown, scales, showtext, testthat (>= 3.0.0), TxDb.Hsapiens.UCSC.hg19.knownGene
 requirements:
   host:
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-plyranges >=1.20.0,<1.21.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
     - r-base
     - r-curl
     - r-data.table
@@ -36,8 +39,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-plyranges >=1.20.0,<1.21.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
     - r-base
     - r-curl
     - r-data.table
diff --git a/recipes/bioconductor-plotgardenerdata/meta.yaml b/recipes/bioconductor-plotgardenerdata/meta.yaml
index a575a778f4be1..9a02df7d187eb 100644
--- a/recipes/bioconductor-plotgardenerdata/meta.yaml
+++ b/recipes/bioconductor-plotgardenerdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "plotgardenerData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 82519e095b0f464cd59388d4146d21db
+  md5: 96055b11818bd59c0c91977b34973608
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-plotgardenerdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, knitr
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-plotgardenerdata/post-link.sh b/recipes/bioconductor-plotgardenerdata/post-link.sh
index 40c8cd63e1efd..44e9cf40f78cf 100644
--- a/recipes/bioconductor-plotgardenerdata/post-link.sh
+++ b/recipes/bioconductor-plotgardenerdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "plotgardenerdata-1.6.0"
+installBiocDataPackage.sh "plotgardenerdata-1.8.0"
diff --git a/recipes/bioconductor-plotgrouper/meta.yaml b/recipes/bioconductor-plotgrouper/meta.yaml
index 1d887cfbba08c..c6e6e6c5bff30 100644
--- a/recipes/bioconductor-plotgrouper/meta.yaml
+++ b/recipes/bioconductor-plotgrouper/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "plotGrouper" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5bfb2cb4a73da0fa5aaa637ca56e2f99
+  md5: aca262974325a32b1d28d58d28e4e012
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-plotgrouper", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, htmltools, BiocStyle, rmarkdown, testthat
 requirements:
diff --git a/recipes/bioconductor-plpe/meta.yaml b/recipes/bioconductor-plpe/meta.yaml
index 4da5eb67c552d..5818330d03f6a 100644
--- a/recipes/bioconductor-plpe/meta.yaml
+++ b/recipes/bioconductor-plpe/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.60.0" %}
+{% set version = "1.62.0" %}
 {% set name = "PLPE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a03620bea737c30691c47836a5a62e2f
+  md5: 1a4887a4c08676e0ce69331caacc297e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-plpe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-lpe >=1.74.0,<1.75.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-lpe >=1.76.0,<1.77.0'
     - r-base
     - r-mass
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-lpe >=1.74.0,<1.75.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-lpe >=1.76.0,<1.77.0'
     - r-base
     - r-mass
 test:
diff --git a/recipes/bioconductor-plyinteractions/build.sh b/recipes/bioconductor-plyinteractions/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-plyinteractions/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-plyinteractions/meta.yaml b/recipes/bioconductor-plyinteractions/meta.yaml
new file mode 100644
index 0000000000000..19e57bfea4e2f
--- /dev/null
+++ b/recipes/bioconductor-plyinteractions/meta.yaml
@@ -0,0 +1,58 @@
+{% set version = "1.0.0" %}
+{% set name = "plyinteractions" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
+  md5: e072613b18768f43d832eaa32354bbc9
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-plyinteractions", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: tidyverse, BSgenome.Mmusculus.UCSC.mm10, Biostrings, BiocParallel, scales, HiContactsData, rtracklayer, BiocStyle, covr, knitr, rmarkdown, sessioninfo, testthat (>= 3.0.0), RefManageR
+requirements:
+  host:
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - r-base
+    - r-dplyr
+    - r-rlang
+    - r-tibble
+    - r-tidyselect
+  run:
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - r-base
+    - r-dplyr
+    - r-rlang
+    - r-tibble
+    - r-tidyselect
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'Extending tidy verbs to genomic interactions'
+  description: 'Operate on `GInteractions` objects as tabular data using `dplyr`-like verbs. The functions and methods in `plyinteractions` provide a grammatical approach to manipulate `GInteractions`, to facilitate their integration in genomic analysis workflows.'
+
diff --git a/recipes/bioconductor-plyranges/meta.yaml b/recipes/bioconductor-plyranges/meta.yaml
index cee8917eb76bc..b8bbe45eb1171 100644
--- a/recipes/bioconductor-plyranges/meta.yaml
+++ b/recipes/bioconductor-plyranges/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "plyranges" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,38 +11,39 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 1afddfe644bc0efd5e2af427d1d9e9e1
+  md5: 23b74165be3c4a855e6a49d8c0f1bab1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-plyranges", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, rmarkdown, testthat (>= 2.1.0), HelloRanges, HelloRangesData, BSgenome.Hsapiens.UCSC.hg19, pasillaBamSubset, covr, ggplot2
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-magrittr
     - 'r-rlang >=0.2.0'
     - 'r-tidyselect >=1.0.0'
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-magrittr
diff --git a/recipes/bioconductor-pmm/meta.yaml b/recipes/bioconductor-pmm/meta.yaml
index 9c766f9eaa537..370e01487e660 100644
--- a/recipes/bioconductor-pmm/meta.yaml
+++ b/recipes/bioconductor-pmm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "pmm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: bb0cdf8f45d20c01984eb90fdf84c93a
+  md5: 43957004fa9664b15f4bca34f7ea975e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pmm", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-pmp/meta.yaml b/recipes/bioconductor-pmp/meta.yaml
index 815b949774a12..ffe645d75fd11 100644
--- a/recipes/bioconductor-pmp/meta.yaml
+++ b/recipes/bioconductor-pmp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "pmp" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: ae759e61d37da021af27182c987264a7
+  md5: 07feec54f330f10904aae29238f79369
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pmp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, covr, knitr, rmarkdown, BiocStyle, gridExtra, magick
 requirements:
   host:
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-matrixstats
     - r-missforest
     - r-reshape2
   run:
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-matrixstats
diff --git a/recipes/bioconductor-pocrcannotation.db/meta.yaml b/recipes/bioconductor-pocrcannotation.db/meta.yaml
index 1da24ace53dd7..0918cbf3fda7b 100644
--- a/recipes/bioconductor-pocrcannotation.db/meta.yaml
+++ b/recipes/bioconductor-pocrcannotation.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "POCRCannotation.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: da1d4dacc5fffb9c5dfea55649974aa5
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pocrcannotation.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-podcall/meta.yaml b/recipes/bioconductor-podcall/meta.yaml
index fd7ab13b42a15..9e63932878f83 100644
--- a/recipes/bioconductor-podcall/meta.yaml
+++ b/recipes/bioconductor-podcall/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "PoDCall" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1f8244df4ed33630558e25e740b18b3b
+  md5: e079c4df0c773e27d396662c928ac51b
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-podcall", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, BiocStyle
 requirements:
@@ -53,6 +54,6 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: GPL-3
   summary: 'Positive Droplet Calling for DNA Methylation Droplet Digital PCR'
-  description: 'Reads files exported from ''QuantaSoft'' containing amplitude values from a run of ddPCR (96 well plate) and robustly sets thresholds to determine positive droplets for each channel of each individual well. Concentration and normalized concentration in addition to other metrics is then calculated for each well. Results are returned as a table, optionally written to file, as well as optional plots (scatterplot and histogram) for both channels per well written to file. The package includes a shiny application which provides an interactive and user-friendly interface to the full functionality of PoDCall.'
+  description: 'Reads files exported from ''QX Manager or QuantaSoft'' containing amplitude values from a run of ddPCR (96 well plate) and robustly sets thresholds to determine positive droplets for each channel of each individual well. Concentration and normalized concentration in addition to other metrics is then calculated for each well. Results are returned as a table, optionally written to file, as well as optional plots (scatterplot and histogram) for both channels per well written to file. The package includes a shiny application which provides an interactive and user-friendly interface to the full functionality of PoDCall.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
diff --git a/recipes/bioconductor-podkat/meta.yaml b/recipes/bioconductor-podkat/meta.yaml
index 25dd36027bbcf..9678b6fcdff8a 100644
--- a/recipes/bioconductor-podkat/meta.yaml
+++ b/recipes/bioconductor-podkat/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "podkat" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,40 +11,41 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 2d1ac828841d66fe3450803679df6c97
+  md5: b06fbdc3f282bde5ec8df0d062d3ecb6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-podkat", max_pin="x.x") }}'
 # Suggests: BSgenome.Hsapiens.UCSC.hg38.masked, TxDb.Hsapiens.UCSC.hg38.knownGene, BSgenome.Mmusculus.UCSC.mm10.masked, GWASTools (>= 1.13.24), VariantAnnotation, SummarizedExperiment, knitr
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-matrix
     - 'r-rcpp >=0.11.1'
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-matrix
     - 'r-rcpp >=0.11.1'
diff --git a/recipes/bioconductor-pogos/meta.yaml b/recipes/bioconductor-pogos/meta.yaml
index f09afba07cf48..426527de50e5d 100644
--- a/recipes/bioconductor-pogos/meta.yaml
+++ b/recipes/bioconductor-pogos/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "pogos" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 7a5e5764a5fdd26c7864e71e8dfab96d
+  md5: 14955bb127999aaa92633bc1ce3a1227
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pogos", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, DT, ontologyPlot, testthat, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-ontoproc >=1.22.0,<1.23.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-ontoproc >=1.24.0,<1.25.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - 'r-httr >=1.3.1'
     - 'r-rjson >=0.2.15'
     - r-shiny
   run:
-    - 'bioconductor-ontoproc >=1.22.0,<1.23.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-ontoproc >=1.24.0,<1.25.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - 'r-httr >=1.3.1'
diff --git a/recipes/bioconductor-polyester/meta.yaml b/recipes/bioconductor-polyester/meta.yaml
index daebb81f896f5..7fa24f5ce3bc9 100644
--- a/recipes/bioconductor-polyester/meta.yaml
+++ b/recipes/bioconductor-polyester/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "polyester" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 6737b2c8ec5c8b1415e784d632e0840c
+  md5: acc47ee29fb9c22fb1ad4bbfafe8fd4d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-polyester", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, ballgown, markdown
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-logspline
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-logspline
 test:
diff --git a/recipes/bioconductor-polyphen.hsapiens.dbsnp131/meta.yaml b/recipes/bioconductor-polyphen.hsapiens.dbsnp131/meta.yaml
index a963c8fbefadf..bd986aeb518f3 100644
--- a/recipes/bioconductor-polyphen.hsapiens.dbsnp131/meta.yaml
+++ b/recipes/bioconductor-polyphen.hsapiens.dbsnp131/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.2" %}
 {% set name = "PolyPhen.Hsapiens.dbSNP131" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,24 +13,25 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 763e9cd4afd97b36f7e659f5454ef61f
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-polyphen.hsapiens.dbsnp131", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - 'r-rsqlite >=0.11.0'
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - 'r-rsqlite >=0.11.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-poma/meta.yaml b/recipes/bioconductor-poma/meta.yaml
index df2809ab82fee..fffe40d372e0b 100644
--- a/recipes/bioconductor-poma/meta.yaml
+++ b/recipes/bioconductor-poma/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "POMA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: acdda87011b0add03854dc75df78fe2b
+  md5: 89690c830c8b6120d4d436f05e34f4eb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-poma", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, covr, ggraph, knitr, patchwork, plotly, tidyverse, testthat (>= 2.3.2)
 requirements:
   host:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-mixomics >=6.24.0,<6.25.0'
-    - 'bioconductor-rankprod >=3.26.0,<3.27.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-mixomics >=6.26.0,<6.27.0'
+    - 'bioconductor-rankprod >=3.28.0,<3.29.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-broom
     - r-caret
@@ -45,13 +46,13 @@ requirements:
     - r-uwot
     - r-vegan
   run:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-mixomics >=6.24.0,<6.25.0'
-    - 'bioconductor-rankprod >=3.26.0,<3.27.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-mixomics >=6.26.0,<6.27.0'
+    - 'bioconductor-rankprod >=3.28.0,<3.29.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-broom
     - r-caret
diff --git a/recipes/bioconductor-poplarcdf/meta.yaml b/recipes/bioconductor-poplarcdf/meta.yaml
index e498d9b89ead7..abe70a10b697e 100644
--- a/recipes/bioconductor-poplarcdf/meta.yaml
+++ b/recipes/bioconductor-poplarcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "poplarcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 556e7f8f6f76436552d8044ef29279cb
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-poplarcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-poplarprobe/meta.yaml b/recipes/bioconductor-poplarprobe/meta.yaml
index fbe45b20cc09b..8844ecc8570be 100644
--- a/recipes/bioconductor-poplarprobe/meta.yaml
+++ b/recipes/bioconductor-poplarprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "poplarprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 87a608cd86084a06973a88e9b51f799a
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-poplarprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-porcine.db/meta.yaml b/recipes/bioconductor-porcine.db/meta.yaml
index 3baabe5d742c9..345d8a9eba876 100644
--- a/recipes/bioconductor-porcine.db/meta.yaml
+++ b/recipes/bioconductor-porcine.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "porcine.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 4a86b3e696d267dca673b4e9276d6368
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-porcine.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.ss.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.ss.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.ss.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.ss.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-porcinecdf/meta.yaml b/recipes/bioconductor-porcinecdf/meta.yaml
index d05d5a922f835..11979dc62adb7 100644
--- a/recipes/bioconductor-porcinecdf/meta.yaml
+++ b/recipes/bioconductor-porcinecdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "porcinecdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 32a60b93829c06a935895fab0a469228
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-porcinecdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-porcineprobe/meta.yaml b/recipes/bioconductor-porcineprobe/meta.yaml
index 35c05fe4ea718..5d0f2c7ddf24a 100644
--- a/recipes/bioconductor-porcineprobe/meta.yaml
+++ b/recipes/bioconductor-porcineprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "porcineprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 5ac483b6329a012d4c9954e3dee8869e
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-porcineprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-powertcr/meta.yaml b/recipes/bioconductor-powertcr/meta.yaml
index 56035aad2d4fb..8df9efbe126d8 100644
--- a/recipes/bioconductor-powertcr/meta.yaml
+++ b/recipes/bioconductor-powertcr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "powerTCR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a1ea8721802f5c9366953c388f888d67
+  md5: 6033da999bfcba4c2e80a45e358c3855
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-powertcr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics
 requirements:
diff --git a/recipes/bioconductor-powsc/meta.yaml b/recipes/bioconductor-powsc/meta.yaml
index 34d53c13d6475..9d658ab0472af 100644
--- a/recipes/bioconductor-powsc/meta.yaml
+++ b/recipes/bioconductor-powsc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "POWSC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 68f052aeb186749e50a9f2bbb5cbe3f6
+  md5: e2ed51f94e9a1b37aa91fe74a007f4d7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-powsc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, knitr, testthat (>= 3.0.0), BiocStyle
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-mast >=1.26.0,<1.27.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-mast >=1.28.0,<1.29.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-pheatmap
     - r-rcolorbrewer
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-mast >=1.26.0,<1.27.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-mast >=1.28.0,<1.29.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-pheatmap
diff --git a/recipes/bioconductor-ppcseq/meta.yaml b/recipes/bioconductor-ppcseq/meta.yaml
index 0603999607703..bb0514df5b5e6 100644
--- a/recipes/bioconductor-ppcseq/meta.yaml
+++ b/recipes/bioconductor-ppcseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "ppcseq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,33 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: dc7a246fc82400b73aa46ba102e9e3ee
+  md5: 5a95706ac4269643dd1eb6efd4bccb67
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ppcseq", max_pin="x.x") }}'
 # Suggests: knitr, testthat, BiocStyle, rmarkdown
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
     - r-base
     - r-benchmarkme
     - 'r-bh >=1.66.0'
     - r-dplyr
     - r-foreach
-    - r-furrr
-    - r-future <1.33
     - r-ggplot2
     - r-lifecycle
     - r-magrittr
     - r-purrr
     - 'r-rcpp >=0.12.0'
     - 'r-rcppeigen >=0.3.3.3.0'
+    - 'r-rcppparallel >=5.0.1'
     - r-rlang
     - 'r-rstan >=2.18.1'
-    - 'r-rstantools >=2.0.0'
+    - 'r-rstantools >=2.1.1'
     - 'r-stanheaders >=2.18.0'
     - r-tibble
     - r-tidybayes
@@ -45,23 +45,22 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
     - r-base
     - r-benchmarkme
     - 'r-bh >=1.66.0'
     - r-dplyr
     - r-foreach
-    - r-furrr
-    - r-future <1.33
     - r-ggplot2
     - r-lifecycle
     - r-magrittr
     - r-purrr
     - 'r-rcpp >=0.12.0'
     - 'r-rcppeigen >=0.3.3.3.0'
+    - 'r-rcppparallel >=5.0.1'
     - r-rlang
     - 'r-rstan >=2.18.1'
-    - 'r-rstantools >=2.0.0'
+    - 'r-rstantools >=2.1.1'
     - 'r-stanheaders >=2.18.0'
     - r-tibble
     - r-tidybayes
diff --git a/recipes/bioconductor-ppinfer/meta.yaml b/recipes/bioconductor-ppinfer/meta.yaml
index ad0b1aad6d7d1..a413c32921519 100644
--- a/recipes/bioconductor-ppinfer/meta.yaml
+++ b/recipes/bioconductor-ppinfer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "PPInfer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5157ef584ef792c5ff0cb55de3da9eba
+  md5: f6b346ab6e0c90b546825aa50fb52b59
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ppinfer", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-stringdb >=2.12.0,<2.13.0'
-    - 'bioconductor-yeastexpdata >=0.46.0,<0.47.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-stringdb >=2.14.0,<2.15.0'
+    - 'bioconductor-yeastexpdata >=0.48.0,<0.49.0'
     - r-base
     - r-ggplot2
     - r-httr
     - r-igraph
     - r-kernlab
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-stringdb >=2.12.0,<2.13.0'
-    - 'bioconductor-yeastexpdata >=0.46.0,<0.47.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-stringdb >=2.14.0,<2.15.0'
+    - 'bioconductor-yeastexpdata >=0.48.0,<0.49.0'
     - r-base
     - r-ggplot2
     - r-httr
diff --git a/recipes/bioconductor-pqsfinder/meta.yaml b/recipes/bioconductor-pqsfinder/meta.yaml
index 112d56bf8879b..d89644da4851d 100644
--- a/recipes/bioconductor-pqsfinder/meta.yaml
+++ b/recipes/bioconductor-pqsfinder/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.16.0" %}
+{% set version = "2.18.0" %}
 {% set name = "pqsfinder" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 498ce0ee8270dbdff5c63f84e4c8717d
+  md5: c1201a86985850d5ace97c629e2d4864
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pqsfinder", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, rmarkdown, Gviz, rtracklayer, ggplot2, BSgenome.Hsapiens.UCSC.hg38, testthat, stringr, stringi
 # SystemRequirements: GNU make, C++11
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-bh >=1.78.0'
     - 'r-rcpp >=0.12.3'
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-bh >=1.78.0'
     - 'r-rcpp >=0.12.3'
diff --git a/recipes/bioconductor-pram/meta.yaml b/recipes/bioconductor-pram/meta.yaml
index b198a21d7c48a..6e6332cc06696 100644
--- a/recipes/bioconductor-pram/meta.yaml
+++ b/recipes/bioconductor-pram/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "pram" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,37 +11,38 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 8737ac32a1a9f2e17fded29baf810970
+  md5: 129a8e2cbbf4abab07038d3b7899c58e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pram", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-data.table >=1.11.8'
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-data.table >=1.11.8'
 test:
diff --git a/recipes/bioconductor-prebs/meta.yaml b/recipes/bioconductor-prebs/meta.yaml
index e7ba1de006868..8be0337f23ffe 100644
--- a/recipes/bioconductor-prebs/meta.yaml
+++ b/recipes/bioconductor-prebs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "prebs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c460d482da9e9b3357490dc60b494517
+  md5: 847264218e6725926f1b56aacd09b541
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-prebs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: prebsdata, hgu133plus2cdf, hgu133plus2probe
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rpa >=1.56.0,<1.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rpa >=1.58.0,<1.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rpa >=1.56.0,<1.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rpa >=1.58.0,<1.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-prebsdata/meta.yaml b/recipes/bioconductor-prebsdata/meta.yaml
index 2f4e2bf53fa33..1b3a2dde647b4 100644
--- a/recipes/bioconductor-prebsdata/meta.yaml
+++ b/recipes/bioconductor-prebsdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "prebsdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 96c0666ea91a4bd5b5c8dbc584f873b3
+  md5: a1c6aee2732035357adc3e2cb99d6bcc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-prebsdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-prebsdata/post-link.sh b/recipes/bioconductor-prebsdata/post-link.sh
index 34de2b2ebc061..816d1ef0dbdd3 100644
--- a/recipes/bioconductor-prebsdata/post-link.sh
+++ b/recipes/bioconductor-prebsdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "prebsdata-1.36.0"
+installBiocDataPackage.sh "prebsdata-1.38.0"
diff --git a/recipes/bioconductor-precisetad/meta.yaml b/recipes/bioconductor-precisetad/meta.yaml
index c11fc03892901..47324c027359e 100644
--- a/recipes/bioconductor-precisetad/meta.yaml
+++ b/recipes/bioconductor-precisetad/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "preciseTAD" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3d90370e884f035d71c774706abf96f2
+  md5: 5e6495261bf370abf46d979aace7f363
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-precisetad", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, BiocCheck, BiocManager, BiocStyle
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rcgh >=1.30.0,<1.31.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rcgh >=1.32.0,<1.33.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-caret
     - r-cluster
@@ -39,10 +40,10 @@ requirements:
     - r-prroc
     - r-randomforest
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rcgh >=1.30.0,<1.31.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rcgh >=1.32.0,<1.33.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-caret
     - r-cluster
diff --git a/recipes/bioconductor-precisetadhub/meta.yaml b/recipes/bioconductor-precisetadhub/meta.yaml
index b9aadfa5e8254..d4dc0c0f45d28 100644
--- a/recipes/bioconductor-precisetadhub/meta.yaml
+++ b/recipes/bioconductor-precisetadhub/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "preciseTADhub" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9e0da7747a2ae263545ef3e426701fd6
+  md5: bff4bbf0a4ac1abf21ff72ad4346795c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-precisetadhub", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, markdown, BiocStyle, preciseTAD
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-precisetadhub/post-link.sh b/recipes/bioconductor-precisetadhub/post-link.sh
index e29d34389daa1..ff7494e2c8d04 100644
--- a/recipes/bioconductor-precisetadhub/post-link.sh
+++ b/recipes/bioconductor-precisetadhub/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "precisetadhub-1.8.0"
+installBiocDataPackage.sh "precisetadhub-1.10.0"
diff --git a/recipes/bioconductor-preda/meta.yaml b/recipes/bioconductor-preda/meta.yaml
index f930ab14e4aaf..2c12240a90381 100644
--- a/recipes/bioconductor-preda/meta.yaml
+++ b/recipes/bioconductor-preda/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "PREDA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9660d5fd5b0221d82953b8bf43e631e7
+  md5: 6f051dc3182b2d70715d84a12e39dd57
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-preda", max_pin="x.x") }}'
   noarch: generic
 # Suggests: quantsmooth, qvalue, limma, caTools, affy, PREDAsampledata
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
     - 'r-lokern >=1.0.9'
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
     - 'r-lokern >=1.0.9'
 test:
diff --git a/recipes/bioconductor-predasampledata/meta.yaml b/recipes/bioconductor-predasampledata/meta.yaml
index 58b45e3f02932..1d617501f624f 100644
--- a/recipes/bioconductor-predasampledata/meta.yaml
+++ b/recipes/bioconductor-predasampledata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.40.0" %}
+{% set version = "0.42.0" %}
 {% set name = "PREDAsampledata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 478b0cd1f601998cfefcca0fdf60eb3d
+  md5: 5acce57384c00a56d658281ba4fa57e5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-predasampledata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: hgu133plus2.db, hgu133plus2cdf
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-preda >=1.46.0,<1.47.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-preda >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-preda >=1.46.0,<1.47.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-preda >=1.48.0,<1.49.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-predasampledata/post-link.sh b/recipes/bioconductor-predasampledata/post-link.sh
index 52ddf15f66bff..abc7050325f76 100644
--- a/recipes/bioconductor-predasampledata/post-link.sh
+++ b/recipes/bioconductor-predasampledata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "predasampledata-0.40.0"
+installBiocDataPackage.sh "predasampledata-0.42.0"
diff --git a/recipes/bioconductor-preprocesscore/build.sh b/recipes/bioconductor-preprocesscore/build.sh
index 203597e1fddf9..c1d13421f5f1e 100644
--- a/recipes/bioconductor-preprocesscore/build.sh
+++ b/recipes/bioconductor-preprocesscore/build.sh
@@ -8,4 +8,4 @@ CXX=$CXX
 CXX98=$CXX
 CXX11=$CXX
 CXX14=$CXX" > ~/.R/Makevars
-$R CMD INSTALL --configure-args="--disable-threading" --build .
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-preprocesscore/meta.yaml b/recipes/bioconductor-preprocesscore/meta.yaml
index 9237faa672b3e..4d4b028c4d4a1 100644
--- a/recipes/bioconductor-preprocesscore/meta.yaml
+++ b/recipes/bioconductor-preprocesscore/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.62.1" %}
+{% set version = "1.64.0" %}
 {% set name = "preprocessCore" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3ef397708852e43e7b3fb42dfe9194d4
+  md5: 2116c6363074b59becdaf7a1e88caf91
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-preprocesscore", max_pin="x.x") }}'
 requirements:
   host:
     - r-base
@@ -38,6 +39,8 @@ about:
   description: 'A library of core preprocessing routines.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/LGPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:preprocesscore
     - doi:10.1038/nmeth.3252
diff --git a/recipes/bioconductor-primeviewcdf/meta.yaml b/recipes/bioconductor-primeviewcdf/meta.yaml
index ddd2fcbf84023..352d7095f852b 100644
--- a/recipes/bioconductor-primeviewcdf/meta.yaml
+++ b/recipes/bioconductor-primeviewcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "primeviewcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 71e39a59a5907e9b8a8dba58d36eee50
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-primeviewcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-primeviewprobe/meta.yaml b/recipes/bioconductor-primeviewprobe/meta.yaml
index 9f3a51a54987e..73bf4d160c889 100644
--- a/recipes/bioconductor-primeviewprobe/meta.yaml
+++ b/recipes/bioconductor-primeviewprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "primeviewprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 87cc56a8da4fb742ab1558ce1d3d26cc
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-primeviewprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-primirtss/meta.yaml b/recipes/bioconductor-primirtss/meta.yaml
index 8c7d1f158dfb0..7ba8ad1cb4071 100644
--- a/recipes/bioconductor-primirtss/meta.yaml
+++ b/recipes/bioconductor-primirtss/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "primirTSS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3dfadad951f97d12b55332c5eff234d6
+  md5: ead295f564f0e3c4c9d9c8bfa568e745
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-primirtss", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg38 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - 'bioconductor-jaspar2018 >=1.1.0,<1.2.0'
     - 'bioconductor-phastcons100way.ucsc.hg38 >=3.7.0,<3.8.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-tfbstools >=1.38.0,<1.39.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-tfbstools >=1.40.0,<1.41.0'
     - r-base
     - 'r-dplyr >=0.7.6'
     - 'r-purrr >=0.2.5'
@@ -42,18 +43,18 @@ requirements:
     - 'r-tibble >=1.4.2'
     - 'r-tidyr >=0.8.1'
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg38 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - 'bioconductor-jaspar2018 >=1.1.0,<1.2.0'
     - 'bioconductor-phastcons100way.ucsc.hg38 >=3.7.0,<3.8.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-tfbstools >=1.38.0,<1.39.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-tfbstools >=1.40.0,<1.41.0'
     - r-base
     - 'r-dplyr >=0.7.6'
     - 'r-purrr >=0.2.5'
diff --git a/recipes/bioconductor-prince/meta.yaml b/recipes/bioconductor-prince/meta.yaml
index a2cef262d826a..f898336ea68c0 100644
--- a/recipes/bioconductor-prince/meta.yaml
+++ b/recipes/bioconductor-prince/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "PrInCE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4341628e51ae0ee0129c0d8036bab10d
+  md5: 98e7e0b9a7e620e0e4ab55436b5c289b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-prince", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
     - r-base
     - 'r-dplyr >=0.7.4'
     - 'r-forecast >=8.2'
@@ -39,8 +40,8 @@ requirements:
     - 'r-tester >=0.1.7'
     - 'r-tidyr >=0.8.99'
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
     - r-base
     - 'r-dplyr >=0.7.4'
     - 'r-forecast >=8.2'
diff --git a/recipes/bioconductor-proactiv/meta.yaml b/recipes/bioconductor-proactiv/meta.yaml
index b3149a802a75b..475fc41ef36eb 100644
--- a/recipes/bioconductor-proactiv/meta.yaml
+++ b/recipes/bioconductor-proactiv/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "proActiv" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4681528e213cee2381e40f66ba06a214
+  md5: 3aaa83b78fb2e017358c24ab185506ca
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-proactiv", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, rmarkdown, knitr, Rtsne, gridExtra
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -40,16 +41,16 @@ requirements:
     - r-scales
     - r-tibble
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-dplyr
diff --git a/recipes/bioconductor-probamr/meta.yaml b/recipes/bioconductor-probamr/meta.yaml
index 52604dbff010f..2afdefe586872 100644
--- a/recipes/bioconductor-probamr/meta.yaml
+++ b/recipes/bioconductor-probamr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "proBAMr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e55435900db79ff363dd274ae7abc343
+  md5: 0b5a894a54fb0d56f940b75e025c0d47
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-probamr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-process/meta.yaml b/recipes/bioconductor-process/meta.yaml
index 6d3f897f897f6..3d680a0f15bea 100644
--- a/recipes/bioconductor-process/meta.yaml
+++ b/recipes/bioconductor-process/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.76.0" %}
+{% set version = "1.78.0" %}
 {% set name = "PROcess" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 605613c9cdcffbaf4c7d332e93e66937
+  md5: 9a9b6e6d31c1c45fb08e1f7cf00f0170
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-process", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-icens >=1.72.0,<1.73.0'
+    - 'bioconductor-icens >=1.74.0,<1.75.0'
     - r-base
   run:
-    - 'bioconductor-icens >=1.72.0,<1.73.0'
+    - 'bioconductor-icens >=1.74.0,<1.75.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-procoil/meta.yaml b/recipes/bioconductor-procoil/meta.yaml
index 679fe920302b5..c05235fe4603e 100644
--- a/recipes/bioconductor-procoil/meta.yaml
+++ b/recipes/bioconductor-procoil/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.28.0" %}
+{% set version = "2.30.0" %}
 {% set name = "procoil" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d4ab86952e13fcb2719019f2f21c40d8
+  md5: 5536c056587bff646a606dec3437fa5d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-procoil", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-kebabs >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-kebabs >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-kebabs >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-kebabs >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-proda/meta.yaml b/recipes/bioconductor-proda/meta.yaml
index 95ef3bb8a2674..5a6afff59963e 100644
--- a/recipes/bioconductor-proda/meta.yaml
+++ b/recipes/bioconductor-proda/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "proDA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7900e3d2213cb542d3095140fe54bda3
+  md5: 906f58f351f6a657aafcb3f6a670cc9f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-proda", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 2.1.0), MSnbase, dplyr, stringr, readr, tidyr, tibble, limma, DEP, numDeriv, pheatmap, knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-extradistr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-extradistr
 test:
diff --git a/recipes/bioconductor-prodata/meta.yaml b/recipes/bioconductor-prodata/meta.yaml
index f64eac848efe7..8b8c68696cd5a 100644
--- a/recipes/bioconductor-prodata/meta.yaml
+++ b/recipes/bioconductor-prodata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "ProData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6a4c17dd4a55240fdeab52f3301e19f6
+  md5: 73f3449db86899c83d61173f6bd02a79
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-prodata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-prodata/post-link.sh b/recipes/bioconductor-prodata/post-link.sh
index 966db4c8593cf..fd3bd80e9d246 100644
--- a/recipes/bioconductor-prodata/post-link.sh
+++ b/recipes/bioconductor-prodata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "prodata-1.38.0"
+installBiocDataPackage.sh "prodata-1.40.0"
diff --git a/recipes/bioconductor-profileplyr/meta.yaml b/recipes/bioconductor-profileplyr/meta.yaml
index 080c30cc6af96..760ca42727502 100644
--- a/recipes/bioconductor-profileplyr/meta.yaml
+++ b/recipes/bioconductor-profileplyr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "profileplyr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 3975e32d9f4494ea85312b1a009ac8ce
+  md5: bc6ac2ac1050660a2cb45a11ebbd1a67
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-profileplyr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, testthat, knitr, rmarkdown, png, Cairo
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-chipseeker >=1.36.0,<1.37.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-enrichedheatmap >=1.30.0,<1.31.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rgreat >=2.2.0,<2.3.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-soggi >=1.32.0,<1.33.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-chipseeker >=1.38.0,<1.39.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-enrichedheatmap >=1.32.0,<1.33.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rgreat >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-soggi >=1.34.0,<1.35.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.17.0,<3.18.0'
+    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.18.0,<3.19.0'
     - 'bioconductor-txdb.mmusculus.ucsc.mm10.knowngene >=3.10.0,<3.11.0'
     - 'bioconductor-txdb.mmusculus.ucsc.mm9.knowngene >=3.2.0,<3.3.0'
     - r-base
@@ -54,25 +55,25 @@ requirements:
     - r-tidyr
     - r-tiff
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-chipseeker >=1.36.0,<1.37.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-enrichedheatmap >=1.30.0,<1.31.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rgreat >=2.2.0,<2.3.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-soggi >=1.32.0,<1.33.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-chipseeker >=1.38.0,<1.39.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-enrichedheatmap >=1.32.0,<1.33.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rgreat >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-soggi >=1.34.0,<1.35.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.17.0,<3.18.0'
+    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.18.0,<3.19.0'
     - 'bioconductor-txdb.mmusculus.ucsc.mm10.knowngene >=3.10.0,<3.11.0'
     - 'bioconductor-txdb.mmusculus.ucsc.mm9.knowngene >=3.2.0,<3.3.0'
     - r-base
diff --git a/recipes/bioconductor-profilescoredist/meta.yaml b/recipes/bioconductor-profilescoredist/meta.yaml
index bedbfef8f41f1..7be23f4741047 100644
--- a/recipes/bioconductor-profilescoredist/meta.yaml
+++ b/recipes/bioconductor-profilescoredist/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "profileScoreDist" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 61e62770ee189714e138987ad490fb96
+  md5: 59d0f0bd369e20aa7be8352e5cf46830
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-profilescoredist", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, MotifDb
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-rcpp
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-rcpp
   build:
diff --git a/recipes/bioconductor-progeny/meta.yaml b/recipes/bioconductor-progeny/meta.yaml
index cbb4a9c2e9064..b6dfccddd3534 100644
--- a/recipes/bioconductor-progeny/meta.yaml
+++ b/recipes/bioconductor-progeny/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "progeny" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: bdb55828f59d804d05e3bddb43c20367
+  md5: 9798ea9424f4115b980496038619f009
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-progeny", max_pin="x.x") }}'
   noarch: generic
 # Suggests: airway, biomaRt, BiocFileCache, broom, Seurat, SingleCellExperiment, DESeq2, BiocStyle, knitr, readr, readxl, pheatmap, tibble, rmarkdown, testthat (>= 2.1.0)
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-decoupler >=2.6.0,<2.7.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-decoupler >=2.8.0,<2.9.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -31,8 +32,8 @@ requirements:
     - r-reshape2
     - r-tidyr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-decoupler >=2.6.0,<2.7.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-decoupler >=2.8.0,<2.9.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-projectr/meta.yaml b/recipes/bioconductor-projectr/meta.yaml
index a6ff976b635cf..b84111fbdebb1 100644
--- a/recipes/bioconductor-projectr/meta.yaml
+++ b/recipes/bioconductor-projectr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "projectR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,42 +11,53 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ef6439c75fc8aa471312a4a03dde8dfb
+  md5: 7351d9a1c593186a6adb189ebd3ff9d2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-projectr", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BiocStyle, gridExtra, grid, testthat, devtools, knitr, rmarkdown, ComplexHeatmap
+# Suggests: BiocStyle, CoGAPS, gridExtra, grid, testthat, devtools, rmarkdown, knitr, rmarkdown, ComplexHeatmap, gplots
 requirements:
   host:
-    - 'bioconductor-cogaps >=3.19.0,<3.20.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-cluster
+    - r-cowplot
     - r-dplyr
     - r-ggalluvial
     - r-ggplot2
+    - r-ggrepel
+    - r-matrix
+    - r-matrixmodels
     - r-nmf
     - r-rcolorbrewer
     - r-reshape2
     - r-rocr
     - r-scales
+    - r-tsne
+    - r-umap
     - r-viridis
   run:
-    - 'bioconductor-cogaps >=3.19.0,<3.20.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-cluster
+    - r-cowplot
     - r-dplyr
     - r-ggalluvial
     - r-ggplot2
+    - r-ggrepel
+    - r-matrix
+    - r-matrixmodels
     - r-nmf
     - r-rcolorbrewer
     - r-reshape2
     - r-rocr
     - r-scales
+    - r-tsne
+    - r-umap
     - r-viridis
 test:
   commands:
diff --git a/recipes/bioconductor-proloc/meta.yaml b/recipes/bioconductor-proloc/meta.yaml
index 9a4fbacdab1db..230e1d8a522c7 100644
--- a/recipes/bioconductor-proloc/meta.yaml
+++ b/recipes/bioconductor-proloc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.1" %}
+{% set version = "1.42.0" %}
 {% set name = "pRoloc" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4300b0c722aeef0f0fd76d37bcb56149
+  md5: 309ce5a09f91050bdf916ab18389d7a8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-proloc", max_pin="x.x") }}'
 # Suggests: testthat, rmarkdown, pRolocdata (>= 1.9.4), roxygen2, xtable, rgl, BiocStyle (>= 2.5.19), hpar (>= 1.41.0), dplyr, akima, fields, vegan, GO.db, AnnotationDbi, Rtsne (>= 0.13), nipals, reshape, magick
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-mlinterfaces >=1.80.0,<1.81.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-mlinterfaces >=1.82.0,<1.83.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
     - r-base
     - r-caret
     - r-class
@@ -56,12 +57,12 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-mlinterfaces >=1.80.0,<1.81.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-mlinterfaces >=1.82.0,<1.83.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
     - r-base
     - r-caret
     - r-class
diff --git a/recipes/bioconductor-prolocdata/meta.yaml b/recipes/bioconductor-prolocdata/meta.yaml
index caef916fdfc2a..fb5d1764fc6b7 100644
--- a/recipes/bioconductor-prolocdata/meta.yaml
+++ b/recipes/bioconductor-prolocdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "pRolocdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3cf7b5644c6af5a158d0291d9b597cd2
+  md5: 8aafd04221b21588077788ec79272e1a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-prolocdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: pRoloc (>= 1.13.8), testthat, SummarizedExperiment
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-prolocdata/post-link.sh b/recipes/bioconductor-prolocdata/post-link.sh
index bc590e3d40f51..58c959a4f2622 100644
--- a/recipes/bioconductor-prolocdata/post-link.sh
+++ b/recipes/bioconductor-prolocdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "prolocdata-1.38.0"
+installBiocDataPackage.sh "prolocdata-1.40.0"
diff --git a/recipes/bioconductor-prolocgui/meta.yaml b/recipes/bioconductor-prolocgui/meta.yaml
index 654796709e1ee..92ba43b5a6797 100644
--- a/recipes/bioconductor-prolocgui/meta.yaml
+++ b/recipes/bioconductor-prolocgui/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.10.0" %}
+{% set version = "2.12.0" %}
 {% set name = "pRolocGUI" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9696984952c5868c1550fbb89db5eb6d
+  md5: a9947bbed5501a1c2c68f7c35364c1da
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-prolocgui", max_pin="x.x") }}'
   noarch: generic
 # Suggests: pRolocdata, knitr, BiocStyle (>= 2.5.19), rmarkdown, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-proloc >=1.40.0,<1.41.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-proloc >=1.42.0,<1.43.0'
     - r-base
     - r-colorspace
     - r-colourpicker
@@ -39,10 +40,10 @@ requirements:
     - r-shinyjs
     - r-shinywidgets
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-proloc >=1.40.0,<1.41.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-proloc >=1.42.0,<1.43.0'
     - r-base
     - r-colorspace
     - r-colourpicker
diff --git a/recipes/bioconductor-promise/meta.yaml b/recipes/bioconductor-promise/meta.yaml
index aeac8a19e26de..17795839b7288 100644
--- a/recipes/bioconductor-promise/meta.yaml
+++ b/recipes/bioconductor-promise/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.52.0" %}
+{% set version = "1.54.0" %}
 {% set name = "PROMISE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 89f8708d951f68b7e63c5cb57cc4b182
+  md5: ad7b8b2fcd0ba52ad47eb9ff23097a4e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-promise", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-proper/meta.yaml b/recipes/bioconductor-proper/meta.yaml
index 0aa0c569bc782..4bb762b00bf39 100644
--- a/recipes/bioconductor-proper/meta.yaml
+++ b/recipes/bioconductor-proper/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "PROPER" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 95670318c035e13983013b9802b91a8e
+  md5: 6f91ce4b3f5feee476a991fc1072c521
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-proper", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle,DESeq2,DSS,knitr
 requirements:
   host:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
     - r-base
   run:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-props/meta.yaml b/recipes/bioconductor-props/meta.yaml
index e22e75404825b..31a4de48bbbe6 100644
--- a/recipes/bioconductor-props/meta.yaml
+++ b/recipes/bioconductor-props/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "PROPS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 00746ca2b4edfa8b4d462491b777039f
+  md5: 20b285908014c5e85775518ea72349c0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-props", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-bnlearn
     - r-reshape2
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-bnlearn
     - r-reshape2
diff --git a/recipes/bioconductor-prostar/meta.yaml b/recipes/bioconductor-prostar/meta.yaml
index 1946540dc3a1b..7833b98683be8 100644
--- a/recipes/bioconductor-prostar/meta.yaml
+++ b/recipes/bioconductor-prostar/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.1" %}
+{% set version = "1.34.3" %}
 {% set name = "Prostar" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 24a2213ce5e4ff844a53fdc1453d5abe
+  md5: ab3095af56a61bfe4fe81279dffcae21
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-prostar", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BiocStyle, BiocManager, testthat, shinyTree, knitr, colourpicker, gtools, XML, R.utils, RColorBrewer, DT, shinyWidgets, sass, rclipboard
+# Suggests: BiocStyle, BiocManager, testthat
 requirements:
   host:
-    - 'bioconductor-dapar >=1.32.0,<1.33.0'
-    - 'bioconductor-dapardata >=1.30.0,<1.31.0'
+    - 'bioconductor-dapar >=1.34.0,<1.35.0'
+    - 'bioconductor-dapardata >=1.32.0,<1.33.0'
     - r-base
+    - r-colourpicker
     - r-data.table
+    - r-dt
     - r-future
     - r-ggplot2
     - r-gplots
+    - r-gtools
     - r-highcharter
     - r-htmlwidgets
+    - r-knitr
     - r-later
     - r-promises
+    - r-r.utils
+    - r-rclipboard
+    - r-rcolorbrewer
     - r-rhandsontable
+    - r-sass
     - r-shiny
     - r-shinyace
     - r-shinybs
@@ -40,22 +49,33 @@ requirements:
     - r-shinyjqui
     - r-shinyjs
     - r-shinythemes
+    - r-shinytree
+    - r-shinywidgets
     - r-tibble
     - r-vioplot
     - r-webshot
+    - r-xml
   run:
-    - 'bioconductor-dapar >=1.32.0,<1.33.0'
-    - 'bioconductor-dapardata >=1.30.0,<1.31.0'
+    - 'bioconductor-dapar >=1.34.0,<1.35.0'
+    - 'bioconductor-dapardata >=1.32.0,<1.33.0'
     - r-base
+    - r-colourpicker
     - r-data.table
+    - r-dt
     - r-future
     - r-ggplot2
     - r-gplots
+    - r-gtools
     - r-highcharter
     - r-htmlwidgets
+    - r-knitr
     - r-later
     - r-promises
+    - r-r.utils
+    - r-rclipboard
+    - r-rcolorbrewer
     - r-rhandsontable
+    - r-sass
     - r-shiny
     - r-shinyace
     - r-shinybs
@@ -63,9 +83,12 @@ requirements:
     - r-shinyjqui
     - r-shinyjs
     - r-shinythemes
+    - r-shinytree
+    - r-shinywidgets
     - r-tibble
     - r-vioplot
     - r-webshot
+    - r-xml
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-prostatecancercamcap/meta.yaml b/recipes/bioconductor-prostatecancercamcap/meta.yaml
index 4d29f05598ac7..b01bd5c2727ae 100644
--- a/recipes/bioconductor-prostatecancercamcap/meta.yaml
+++ b/recipes/bioconductor-prostatecancercamcap/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "prostateCancerCamcap" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ff2a0d04db22bce6d2d1722e718edeb5
+  md5: 5a27ee47f07162569e5e1e06ffd69886
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-prostatecancercamcap", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GEOquery
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-prostatecancercamcap/post-link.sh b/recipes/bioconductor-prostatecancercamcap/post-link.sh
index f05e7e90c4971..884e3a7cda119 100644
--- a/recipes/bioconductor-prostatecancercamcap/post-link.sh
+++ b/recipes/bioconductor-prostatecancercamcap/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "prostatecancercamcap-1.28.0"
+installBiocDataPackage.sh "prostatecancercamcap-1.30.0"
diff --git a/recipes/bioconductor-prostatecancergrasso/meta.yaml b/recipes/bioconductor-prostatecancergrasso/meta.yaml
index a12622be233ab..642718a61eedf 100644
--- a/recipes/bioconductor-prostatecancergrasso/meta.yaml
+++ b/recipes/bioconductor-prostatecancergrasso/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "prostateCancerGrasso" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cc2f4713d5950c0fcd99dd320adbdb2d
+  md5: c331c996d943a14687439dfdf37b8029
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-prostatecancergrasso", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GEOquery
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-prostatecancergrasso/post-link.sh b/recipes/bioconductor-prostatecancergrasso/post-link.sh
index b7bec21917d26..544c52ea34897 100644
--- a/recipes/bioconductor-prostatecancergrasso/post-link.sh
+++ b/recipes/bioconductor-prostatecancergrasso/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "prostatecancergrasso-1.28.0"
+installBiocDataPackage.sh "prostatecancergrasso-1.30.0"
diff --git a/recipes/bioconductor-prostatecancerstockholm/meta.yaml b/recipes/bioconductor-prostatecancerstockholm/meta.yaml
index 09bd6e6c8db4f..483e6a2239ac4 100644
--- a/recipes/bioconductor-prostatecancerstockholm/meta.yaml
+++ b/recipes/bioconductor-prostatecancerstockholm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "prostateCancerStockholm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f2ec2d712681d173c561a57451acae94
+  md5: 49326bf3b6f66be78fa1e6d6768b5538
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-prostatecancerstockholm", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GEOquery
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-prostatecancerstockholm/post-link.sh b/recipes/bioconductor-prostatecancerstockholm/post-link.sh
index 09ddf03cf328d..b347e68cf857d 100644
--- a/recipes/bioconductor-prostatecancerstockholm/post-link.sh
+++ b/recipes/bioconductor-prostatecancerstockholm/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "prostatecancerstockholm-1.28.0"
+installBiocDataPackage.sh "prostatecancerstockholm-1.30.0"
diff --git a/recipes/bioconductor-prostatecancertaylor/meta.yaml b/recipes/bioconductor-prostatecancertaylor/meta.yaml
index 5babe7d413b01..00ac0962d4074 100644
--- a/recipes/bioconductor-prostatecancertaylor/meta.yaml
+++ b/recipes/bioconductor-prostatecancertaylor/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "prostateCancerTaylor" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d41f91c630547581ccabf8159a79d889
+  md5: c90ff79776e9a658d4cf05e9a29706a8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-prostatecancertaylor", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GEOquery, org.Hs.eg.db
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-prostatecancertaylor/post-link.sh b/recipes/bioconductor-prostatecancertaylor/post-link.sh
index f127abf7081f2..814031af6bc79 100644
--- a/recipes/bioconductor-prostatecancertaylor/post-link.sh
+++ b/recipes/bioconductor-prostatecancertaylor/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "prostatecancertaylor-1.28.0"
+installBiocDataPackage.sh "prostatecancertaylor-1.30.0"
diff --git a/recipes/bioconductor-prostatecancervarambally/meta.yaml b/recipes/bioconductor-prostatecancervarambally/meta.yaml
index b88d542ce7ef5..65f3a1df66b5c 100644
--- a/recipes/bioconductor-prostatecancervarambally/meta.yaml
+++ b/recipes/bioconductor-prostatecancervarambally/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "prostateCancerVarambally" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8008e839c2e72aee55433f2361efb0cb
+  md5: cf8fc1872af8c5c2b47372ce94ed4c5c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-prostatecancervarambally", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GEOquery
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-prostatecancervarambally/post-link.sh b/recipes/bioconductor-prostatecancervarambally/post-link.sh
index f89b0acc823e7..6a6d1ca836881 100644
--- a/recipes/bioconductor-prostatecancervarambally/post-link.sh
+++ b/recipes/bioconductor-prostatecancervarambally/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "prostatecancervarambally-1.28.0"
+installBiocDataPackage.sh "prostatecancervarambally-1.30.0"
diff --git a/recipes/bioconductor-proteinprofiles/meta.yaml b/recipes/bioconductor-proteinprofiles/meta.yaml
index 45df829cdd2d0..ac403d2f66889 100644
--- a/recipes/bioconductor-proteinprofiles/meta.yaml
+++ b/recipes/bioconductor-proteinprofiles/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "proteinProfiles" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ffcc07e3926008e6f478089073aa6443
+  md5: 491483ff7b360413ae0eafa5ac07de14
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-proteinprofiles", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat
 requirements:
diff --git a/recipes/bioconductor-proteodisco/meta.yaml b/recipes/bioconductor-proteodisco/meta.yaml
index 0a74dbf806d1b..6e6ba09dfda9e 100644
--- a/recipes/bioconductor-proteodisco/meta.yaml
+++ b/recipes/bioconductor-proteodisco/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "ProteoDisco" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c3f18bfe0ae324151bd6a6ff32f1ea99
+  md5: f69597248b6cbbdb2c1029a1dd3b39cd
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-proteodisco", max_pin="x.x") }}'
   noarch: generic
 # Suggests: AnnotationDbi (>= 1.54.1), BSgenome (>= 1.60.0), BSgenome.Hsapiens.UCSC.hg19 (>= 1.4.3), BiocStyle (>= 2.20.1), DelayedArray (>= 0.18.0), devtools (>= 2.4.2), knitr (>= 1.33), matrixStats (>= 0.59.0), markdown (>= 1.1), org.Hs.eg.db (>= 3.13.0), purrr (>= 0.3.4), RCurl (>= 1.98.1.3), readr (>= 1.4.0), ggplot2 (>= 3.3.5), rmarkdown (>= 2.9), rtracklayer (>= 1.52.0), seqinr (>= 4.2.8), stringr (>= 1.4.0), reshape2 (>= 1.4.4), scales (>= 1.1.1), testthat (>= 3.0.3), TxDb.Hsapiens.UCSC.hg19.knownGene (>= 3.2.2)
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-cleaver >=1.38.0,<1.39.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-cleaver >=1.40.0,<1.41.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - 'r-checkmate >=2.0.0'
     - 'r-dplyr >=1.0.6'
@@ -41,17 +42,17 @@ requirements:
     - 'r-tibble >=3.1.2'
     - 'r-tidyr >=1.1.3'
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-cleaver >=1.38.0,<1.39.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-cleaver >=1.40.0,<1.41.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - 'r-checkmate >=2.0.0'
     - 'r-dplyr >=1.0.6'
diff --git a/recipes/bioconductor-proteomm/meta.yaml b/recipes/bioconductor-proteomm/meta.yaml
index 5207b937a4d19..18d262626a71c 100644
--- a/recipes/bioconductor-proteomm/meta.yaml
+++ b/recipes/bioconductor-proteomm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "ProteoMM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c9f13f6998275db7f5a4374f3ae69883
+  md5: 6497729c8cc0221c898927dcddeb00e0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-proteomm", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
     - r-base
     - r-gdata
     - r-ggplot2
@@ -29,7 +30,7 @@ requirements:
     - r-gtools
     - r-matrixstats
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
     - r-base
     - r-gdata
     - r-ggplot2
diff --git a/recipes/bioconductor-protgear/meta.yaml b/recipes/bioconductor-protgear/meta.yaml
index 97862f28cf361..6d3a0b7331dc4 100644
--- a/recipes/bioconductor-protgear/meta.yaml
+++ b/recipes/bioconductor-protgear/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "protGear" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3d7b1ec8bb2be4491137f53da1b9f5f7
+  md5: db63dca71894a3ebbf3b8b78512bccb4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-protgear", max_pin="x.x") }}'
   noarch: generic
 # Suggests: gridExtra (>= 2.3), png (>= 0.1-7) , magick (>= 2.7.3) , ggplotify (>= 0.1.0) , scales (>= 1.1.1) , shinythemes (>= 1.2.0) , shinyjs (>= 2.0.0) , shinyWidgets (>= 0.6.2) , shinycssloaders (>= 1.0.0) , shinyalert (>= 3.0.0) , shinyFiles (>= 0.9.1) , shinyFeedback (>= 0.3.0)
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-base
     - 'r-data.table >=1.14.0'
     - 'r-dplyr >=0.8.0'
@@ -54,10 +55,10 @@ requirements:
     - 'r-tibble >=3.1.0'
     - 'r-tidyr >=1.1.3'
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-base
     - 'r-data.table >=1.14.0'
     - 'r-dplyr >=0.8.0'
diff --git a/recipes/bioconductor-protgenerics/meta.yaml b/recipes/bioconductor-protgenerics/meta.yaml
index 15ba078511ed3..99dbefecd9faf 100644
--- a/recipes/bioconductor-protgenerics/meta.yaml
+++ b/recipes/bioconductor-protgenerics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "ProtGenerics" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7848b0ce11174fd3e995eb39dc57766a
+  md5: 5d55c00588169aa089bb457e2d94669a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-protgenerics", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat
 requirements:
diff --git a/recipes/bioconductor-psea/meta.yaml b/recipes/bioconductor-psea/meta.yaml
index d3bcfe4d2b3da..2460bda29bef8 100644
--- a/recipes/bioconductor-psea/meta.yaml
+++ b/recipes/bioconductor-psea/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "PSEA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: dfe8429c4952bb970f612fb15cfe8545
+  md5: c8f9f8210c265d722d76668e19a6fd7c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-psea", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-mass
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-mass
 test:
diff --git a/recipes/bioconductor-psichomics/meta.yaml b/recipes/bioconductor-psichomics/meta.yaml
index cf57efd937530..34f50e50ef81c 100644
--- a/recipes/bioconductor-psichomics/meta.yaml
+++ b/recipes/bioconductor-psichomics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "psichomics" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 5a9ad76e280bfbe775fda70657d72adc
+  md5: 8d6d1c34972e5d4b389d9263ab2077db
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-psichomics", max_pin="x.x") }}'
 # Suggests: testthat, knitr, parallel, devtools, rmarkdown, gplots, covr, car, rstudioapi, spelling
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-recount >=1.26.0,<1.27.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-recount >=1.28.0,<1.29.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cluster
     - r-colourpicker
@@ -59,13 +60,13 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-recount >=1.26.0,<1.27.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-recount >=1.28.0,<1.29.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cluster
     - r-colourpicker
diff --git a/recipes/bioconductor-psmatch/meta.yaml b/recipes/bioconductor-psmatch/meta.yaml
index 2946b78c9dfa2..86c4f75515374 100644
--- a/recipes/bioconductor-psmatch/meta.yaml
+++ b/recipes/bioconductor-psmatch/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "PSMatch" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,32 +11,33 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 17a718dd3fa26d78a2584f90bc5b0631
+  md5: 4c63ca3d541af4e5925bcc2bde7d67ea
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-psmatch", max_pin="x.x") }}'
   noarch: generic
 # Suggests: msdata, rpx, mzID, mzR, Spectra, SummarizedExperiment, BiocStyle, rmarkdown, knitr, factoextra, testthat
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-qfeatures >=1.10.0,<1.11.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-qfeatures >=1.12.0,<1.13.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-igraph
     - r-matrix
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-qfeatures >=1.10.0,<1.11.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-qfeatures >=1.12.0,<1.13.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-igraph
     - r-matrix
diff --git a/recipes/bioconductor-psygenet2r/meta.yaml b/recipes/bioconductor-psygenet2r/meta.yaml
index d8785e016a310..4550ccfe6407e 100644
--- a/recipes/bioconductor-psygenet2r/meta.yaml
+++ b/recipes/bioconductor-psygenet2r/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.2" %}
+{% set version = "1.34.0" %}
 {% set name = "psygenet2r" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: ce5ce92ebd24818a539a905621b0f4e2
+  md5: 69234da568b765050beb79aa46205114
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-psygenet2r", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-bgeedb >=2.26.0,<2.27.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-bgeedb >=2.28.0,<2.29.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - r-ggplot2
     - r-igraph
@@ -34,11 +35,11 @@ requirements:
     - r-reshape2
     - r-stringr
   run:
-    - 'bioconductor-bgeedb >=2.26.0,<2.27.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-bgeedb >=2.28.0,<2.29.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - r-ggplot2
     - r-igraph
diff --git a/recipes/bioconductor-ptairdata/meta.yaml b/recipes/bioconductor-ptairdata/meta.yaml
index 65052ec0ce765..47412396819e7 100644
--- a/recipes/bioconductor-ptairdata/meta.yaml
+++ b/recipes/bioconductor-ptairdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "ptairData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ede739875473864ed372a4fb877b1852
+  md5: eea0fcfdd0047d72092a3b6beb326129
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ptairdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, BiocStyle
 requirements:
   host:
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
     - r-base
     - r-signal
   run:
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
     - r-base
     - r-signal
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ptairdata/post-link.sh b/recipes/bioconductor-ptairdata/post-link.sh
index 1f8d934053b1f..8d2982bffafe3 100644
--- a/recipes/bioconductor-ptairdata/post-link.sh
+++ b/recipes/bioconductor-ptairdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "ptairdata-1.8.0"
+installBiocDataPackage.sh "ptairdata-1.10.0"
diff --git a/recipes/bioconductor-ptairms/meta.yaml b/recipes/bioconductor-ptairms/meta.yaml
index f69b15f2e94b9..dbf733b5430bc 100644
--- a/recipes/bioconductor-ptairms/meta.yaml
+++ b/recipes/bioconductor-ptairms/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "ptairMS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1d7e194913f9006f5782be7aa4944714
+  md5: 771ce745db55fad5684a47026df33abe
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ptairms", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, BiocStyle, testthat (>= 2.1.0), ptairData, ropls
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
     - r-base
     - r-bit64
     - r-chron
@@ -46,9 +47,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
     - r-base
     - r-bit64
     - r-chron
@@ -80,6 +81,6 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: GPL-3
   summary: 'Pre-processing PTR-TOF-MS Data'
-  description: 'This package implements a suite of methods to preprocess data from PTR-TOF-MS instruments (HDF5 format) and generates the ''sample by features'' table of peak intensities in addition to the sample and feature metadata (as a single ExpressionSet object for subsequent statistical analysis). This package also permit usefull tools for cohorts management as analyzing data progressively, visualization tools and quality control. The steps include calibration, expiration detection, peak detection and quantification, feature alignment, missing value imputation and feature annotation. Applications to exhaled air and cell culture in headspace are described in the vignettes and examples. This package was used for data analysis of Gassin Delyle study on adults undergoing invasive mechanical ventilation in the intensive care unit due to severe COVID-19 or non-COVID-19 acute respiratory distress syndrome (ARDS), and permit to identfy four potentiel biomarquers of the infection.'
+  description: 'This package implements a suite of methods to preprocess data from PTR-TOF-MS instruments (HDF5 format) and generates the ''sample by features'' table of peak intensities in addition to the sample and feature metadata (as a singl<e ExpressionSet object for subsequent statistical analysis). This package also permit usefull tools for cohorts management as analyzing data progressively, visualization tools and quality control. The steps include calibration, expiration detection, peak detection and quantification, feature alignment, missing value imputation and feature annotation. Applications to exhaled air and cell culture in headspace are described in the vignettes and examples. This package was used for data analysis of Gassin Delyle study on adults undergoing invasive mechanical ventilation in the intensive care unit due to severe COVID-19 or non-COVID-19 acute respiratory distress syndrome (ARDS), and permit to identfy four potentiel biomarquers of the infection.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
diff --git a/recipes/bioconductor-pth2o2lipids/meta.yaml b/recipes/bioconductor-pth2o2lipids/meta.yaml
index ea516a9e5676b..f77b60faa1804 100644
--- a/recipes/bioconductor-pth2o2lipids/meta.yaml
+++ b/recipes/bioconductor-pth2o2lipids/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "PtH2O2lipids" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7555134e1714c1d20f25a30f2c74d33c
+  md5: 498d573bc33e7566708c38be5098bb2e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pth2o2lipids", max_pin="x.x") }}'
   noarch: generic
 # Suggests: gplots, RColorBrewer, cluster, vegan
 requirements:
   host:
-    - 'bioconductor-camera >=1.56.0,<1.57.0'
-    - 'bioconductor-lobstahs >=1.26.0,<1.27.0'
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-camera >=1.58.0,<1.59.0'
+    - 'bioconductor-lobstahs >=1.28.0,<1.29.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-base
   run:
-    - 'bioconductor-camera >=1.56.0,<1.57.0'
-    - 'bioconductor-lobstahs >=1.26.0,<1.27.0'
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-camera >=1.58.0,<1.59.0'
+    - 'bioconductor-lobstahs >=1.28.0,<1.29.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pth2o2lipids/post-link.sh b/recipes/bioconductor-pth2o2lipids/post-link.sh
index 1a5c3167d93b6..db6d6c3fc4d12 100644
--- a/recipes/bioconductor-pth2o2lipids/post-link.sh
+++ b/recipes/bioconductor-pth2o2lipids/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "pth2o2lipids-1.26.0"
+installBiocDataPackage.sh "pth2o2lipids-1.28.0"
diff --git a/recipes/bioconductor-puma/meta.yaml b/recipes/bioconductor-puma/meta.yaml
index c7823e3ecf680..991e8eb47bf36 100644
--- a/recipes/bioconductor-puma/meta.yaml
+++ b/recipes/bioconductor-puma/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.42.0" %}
+{% set version = "3.44.0" %}
 {% set name = "puma" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: ec485bb2cd3bc9d97a2badb8b1c0be2d
+  md5: ed1d90c9c9b7751611b0f32edf0a1ffb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-puma", max_pin="x.x") }}'
 # Suggests: pumadata, affydata, snow, limma, ROCR,annotate
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-affyio >=1.70.0,<1.71.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-affyio >=1.72.0,<1.73.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
     - r-base
     - r-mclust
     - libblas
     - liblapack
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-affyio >=1.70.0,<1.71.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-affyio >=1.72.0,<1.73.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
     - r-base
     - r-mclust
   build:
diff --git a/recipes/bioconductor-pumadata/meta.yaml b/recipes/bioconductor-pumadata/meta.yaml
index b67c027c521de..a621ddfcce813 100644
--- a/recipes/bioconductor-pumadata/meta.yaml
+++ b/recipes/bioconductor-pumadata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.36.0" %}
+{% set version = "2.38.0" %}
 {% set name = "pumadata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 8201e94e0c66444c72b8f45bd3ca7020
+  md5: 811d6234d1d4e310beb7111601b157b7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pumadata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-puma >=3.42.0,<3.43.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-puma >=3.44.0,<3.45.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-puma >=3.42.0,<3.43.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-puma >=3.44.0,<3.45.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pumadata/post-link.sh b/recipes/bioconductor-pumadata/post-link.sh
index a66648cc03439..1b94fc5e7a3cf 100644
--- a/recipes/bioconductor-pumadata/post-link.sh
+++ b/recipes/bioconductor-pumadata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "pumadata-2.36.0"
+installBiocDataPackage.sh "pumadata-2.38.0"
diff --git a/recipes/bioconductor-purecn/meta.yaml b/recipes/bioconductor-purecn/meta.yaml
index 2c5bcc9a97740..a34ed6b085135 100644
--- a/recipes/bioconductor-purecn/meta.yaml
+++ b/recipes/bioconductor-purecn/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.6.4" %}
+{% set version = "2.8.1" %}
 {% set name = "PureCN" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6ec5551dfa20ade4fa9d0bbb6767709c
+  md5: d668ed7c332244073d26762dd291004f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-purecn", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocParallel, BiocStyle, PSCBS, R.utils, TxDb.Hsapiens.UCSC.hg19.knownGene, covr, knitr, optparse, org.Hs.eg.db, jsonlite, markdown, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-data.table
     - r-futile.logger
@@ -45,20 +46,20 @@ requirements:
     - r-rcolorbrewer
     - r-vgam
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-data.table
     - r-futile.logger
diff --git a/recipes/bioconductor-pvac/meta.yaml b/recipes/bioconductor-pvac/meta.yaml
index 66f2c8112a2a8..904378bd67a73 100644
--- a/recipes/bioconductor-pvac/meta.yaml
+++ b/recipes/bioconductor-pvac/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "pvac" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: abfcf7faff5f1bc03741c07c72eb6c29
+  md5: ae148a3c65e5b6efc44cfea7d208d918
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pvac", max_pin="x.x") }}'
   noarch: generic
 # Suggests: pbapply, affydata, ALLMLL, genefilter
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-pvca/meta.yaml b/recipes/bioconductor-pvca/meta.yaml
index d0aad607a7176..c02a34e9d4f84 100644
--- a/recipes/bioconductor-pvca/meta.yaml
+++ b/recipes/bioconductor-pvca/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "pvca" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: e0f8e4f5b7de7c8a1eac5199675c140c
+  md5: dcc72a578e6ec7d738fab213c4d27e20
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pvca", max_pin="x.x") }}'
   noarch: generic
 # Suggests: golubEsets
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-base
     - r-lme4
     - r-matrix
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-base
     - r-lme4
     - r-matrix
diff --git a/recipes/bioconductor-pviz/meta.yaml b/recipes/bioconductor-pviz/meta.yaml
index 9e8a823fee0fd..83a82e5290e48 100644
--- a/recipes/bioconductor-pviz/meta.yaml
+++ b/recipes/bioconductor-pviz/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "Pviz" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2a6f2ef898de7e8a4fb115b42f651872
+  md5: 1a1513067c6a873f9523f20eb85f2878
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pviz", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, pepDat
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-biovizbase >=1.48.0,<1.49.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-biovizbase >=1.50.0,<1.51.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-data.table
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-biovizbase >=1.48.0,<1.49.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-biovizbase >=1.50.0,<1.51.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-data.table
 test:
diff --git a/recipes/bioconductor-pwmenrich.dmelanogaster.background/meta.yaml b/recipes/bioconductor-pwmenrich.dmelanogaster.background/meta.yaml
index 6fb8ca4fd431f..0fc2d9e14d907 100644
--- a/recipes/bioconductor-pwmenrich.dmelanogaster.background/meta.yaml
+++ b/recipes/bioconductor-pwmenrich.dmelanogaster.background/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "4.34.0" %}
+{% set version = "4.36.0" %}
 {% set name = "PWMEnrich.Dmelanogaster.background" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 907d3ff8c0fb527c01dbf099a075f732
+  md5: b671ba0cff5c0c6017fd3f72d0afc547
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pwmenrich.dmelanogaster.background", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-pwmenrich >=4.36.0,<4.37.0'
+    - 'bioconductor-pwmenrich >=4.38.0,<4.39.0'
     - r-base
   run:
-    - 'bioconductor-pwmenrich >=4.36.0,<4.37.0'
+    - 'bioconductor-pwmenrich >=4.38.0,<4.39.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pwmenrich.dmelanogaster.background/post-link.sh b/recipes/bioconductor-pwmenrich.dmelanogaster.background/post-link.sh
index 46d30a6d9777d..f9aedbea31b16 100644
--- a/recipes/bioconductor-pwmenrich.dmelanogaster.background/post-link.sh
+++ b/recipes/bioconductor-pwmenrich.dmelanogaster.background/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "pwmenrich.dmelanogaster.background-4.34.0"
+installBiocDataPackage.sh "pwmenrich.dmelanogaster.background-4.36.0"
diff --git a/recipes/bioconductor-pwmenrich.hsapiens.background/meta.yaml b/recipes/bioconductor-pwmenrich.hsapiens.background/meta.yaml
index f89270babbb6d..2cc73594c1eb4 100644
--- a/recipes/bioconductor-pwmenrich.hsapiens.background/meta.yaml
+++ b/recipes/bioconductor-pwmenrich.hsapiens.background/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "4.34.0" %}
+{% set version = "4.36.0" %}
 {% set name = "PWMEnrich.Hsapiens.background" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 02021cd798df13ad0f124fdc481ebe33
+  md5: 7c7b177c29fc31c7546d4e7160a9b977
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pwmenrich.hsapiens.background", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-pwmenrich >=4.36.0,<4.37.0'
+    - 'bioconductor-pwmenrich >=4.38.0,<4.39.0'
     - r-base
   run:
-    - 'bioconductor-pwmenrich >=4.36.0,<4.37.0'
+    - 'bioconductor-pwmenrich >=4.38.0,<4.39.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pwmenrich.hsapiens.background/post-link.sh b/recipes/bioconductor-pwmenrich.hsapiens.background/post-link.sh
index 00e6fb83781aa..5fd33b45910e0 100644
--- a/recipes/bioconductor-pwmenrich.hsapiens.background/post-link.sh
+++ b/recipes/bioconductor-pwmenrich.hsapiens.background/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "pwmenrich.hsapiens.background-4.34.0"
+installBiocDataPackage.sh "pwmenrich.hsapiens.background-4.36.0"
diff --git a/recipes/bioconductor-pwmenrich.mmusculus.background/meta.yaml b/recipes/bioconductor-pwmenrich.mmusculus.background/meta.yaml
index 9a674ea664f6b..14f7a80059072 100644
--- a/recipes/bioconductor-pwmenrich.mmusculus.background/meta.yaml
+++ b/recipes/bioconductor-pwmenrich.mmusculus.background/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "4.34.0" %}
+{% set version = "4.36.0" %}
 {% set name = "PWMEnrich.Mmusculus.background" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e81cb70d4a4850829fa5a83003c75404
+  md5: 5d54401a941d1efe7148da2ddc714d65
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pwmenrich.mmusculus.background", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-pwmenrich >=4.36.0,<4.37.0'
+    - 'bioconductor-pwmenrich >=4.38.0,<4.39.0'
     - r-base
   run:
-    - 'bioconductor-pwmenrich >=4.36.0,<4.37.0'
+    - 'bioconductor-pwmenrich >=4.38.0,<4.39.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-pwmenrich.mmusculus.background/post-link.sh b/recipes/bioconductor-pwmenrich.mmusculus.background/post-link.sh
index cf21e15375be7..b583b5d163e55 100644
--- a/recipes/bioconductor-pwmenrich.mmusculus.background/post-link.sh
+++ b/recipes/bioconductor-pwmenrich.mmusculus.background/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "pwmenrich.mmusculus.background-4.34.0"
+installBiocDataPackage.sh "pwmenrich.mmusculus.background-4.36.0"
diff --git a/recipes/bioconductor-pwmenrich/meta.yaml b/recipes/bioconductor-pwmenrich/meta.yaml
index 4b8dbaf802a26..e3e4139a4902f 100644
--- a/recipes/bioconductor-pwmenrich/meta.yaml
+++ b/recipes/bioconductor-pwmenrich/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "4.36.0" %}
+{% set version = "4.38.0" %}
 {% set name = "PWMEnrich" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6d26185e888435e846dec08f4f6b566d
+  md5: ced56cbfbab381f5736f4f58fe26b9f8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pwmenrich", max_pin="x.x") }}'
   noarch: generic
 # Suggests: MotifDb, BSgenome, BSgenome.Dmelanogaster.UCSC.dm3, PWMEnrich.Dmelanogaster.background, testthat, gtools, parallel, PWMEnrich.Hsapiens.background, PWMEnrich.Mmusculus.background, BiocStyle, knitr
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-seqlogo >=1.66.0,<1.67.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-seqlogo >=1.68.0,<1.69.0'
     - r-base
     - r-evd
     - r-gdata
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-seqlogo >=1.66.0,<1.67.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-seqlogo >=1.68.0,<1.69.0'
     - r-base
     - r-evd
     - r-gdata
diff --git a/recipes/bioconductor-pwomics/meta.yaml b/recipes/bioconductor-pwomics/meta.yaml
index dfd46023a8190..9ad50be8600cb 100644
--- a/recipes/bioconductor-pwomics/meta.yaml
+++ b/recipes/bioconductor-pwomics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "pwOmics" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,39 +11,40 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9f2c44535d54b08ef853fd4d7fea7092
+  md5: fcb2cc2e104a970552cc4f45ce4a1197
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-pwomics", max_pin="x.x") }}'
   noarch: generic
-# Suggests: ebdbNet, longitudinal, Mfuzz
+# Suggests: ebdbNet, longitudinal, Mfuzz, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rbiopaxparser >=2.40.0,<2.41.0'
-    - 'bioconductor-stringdb >=2.12.0,<2.13.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rbiopaxparser >=2.42.0,<2.43.0'
+    - 'bioconductor-stringdb >=2.14.0,<2.15.0'
     - r-base
     - r-data.table
     - r-gplots
     - r-igraph
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rbiopaxparser >=2.40.0,<2.41.0'
-    - 'bioconductor-stringdb >=2.12.0,<2.13.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rbiopaxparser >=2.42.0,<2.43.0'
+    - 'bioconductor-stringdb >=2.14.0,<2.15.0'
     - r-base
     - r-data.table
     - r-gplots
diff --git a/recipes/bioconductor-pwrewas.data/meta.yaml b/recipes/bioconductor-pwrewas.data/meta.yaml
index c7be770b6480c..3c654ffcdf181 100644
--- a/recipes/bioconductor-pwrewas.data/meta.yaml
+++ b/recipes/bioconductor-pwrewas.data/meta.yaml
@@ -27,7 +27,7 @@ requirements:
     - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - bioconductor-data-packages >=20230706
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-qckitfastq/meta.yaml b/recipes/bioconductor-qckitfastq/meta.yaml
index 459c1c90d6de9..ecb59cbec82ca 100644
--- a/recipes/bioconductor-qckitfastq/meta.yaml
+++ b/recipes/bioconductor-qckitfastq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "qckitfastq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,7 +11,7 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 3c41af38fcd03a1f5e2bf17aa58969c0
+  md5: 60955b37d9eb0868da1c5ecd262334e8
   patches:
     - shared_timed_mutex.patch
 build:
@@ -19,13 +19,14 @@ build:
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-qckitfastq", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, kableExtra, testthat
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-rseqan >=1.20.0,<1.21.0'
-    - 'bioconductor-seqtools >=1.34.0,<1.35.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-rseqan >=1.22.0,<1.23.0'
+    - 'bioconductor-seqtools >=1.36.0,<1.37.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -37,9 +38,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-rseqan >=1.20.0,<1.21.0'
-    - 'bioconductor-seqtools >=1.34.0,<1.35.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-rseqan >=1.22.0,<1.23.0'
+    - 'bioconductor-seqtools >=1.36.0,<1.37.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-data.table
     - r-dplyr
diff --git a/recipes/bioconductor-qcmetrics/meta.yaml b/recipes/bioconductor-qcmetrics/meta.yaml
index 9a0b45ade18c7..2cdd85a42a547 100644
--- a/recipes/bioconductor-qcmetrics/meta.yaml
+++ b/recipes/bioconductor-qcmetrics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "qcmetrics" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 6285c583fa47f8be686d506160602efc
+  md5: 68f2a395be6986c02f8473dbe25ed621
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-qcmetrics", max_pin="x.x") }}'
   noarch: generic
 # Suggests: affy, MSnbase, ggplot2, lattice, mzR, BiocStyle, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-knitr
     - r-pander
     - r-xtable
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-knitr
     - r-pander
diff --git a/recipes/bioconductor-qdnaseq.hg19/meta.yaml b/recipes/bioconductor-qdnaseq.hg19/meta.yaml
index c3c0694654834..bd3148547dbbb 100644
--- a/recipes/bioconductor-qdnaseq.hg19/meta.yaml
+++ b/recipes/bioconductor-qdnaseq.hg19/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "QDNAseq.hg19" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6b81f056006151fd4a2f55935ee57f67
+  md5: 2b663d8771f16d55db88ec3321942ead
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-qdnaseq.hg19", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-qdnaseq >=1.36.0,<1.37.0'
+    - 'bioconductor-qdnaseq >=1.38.0,<1.39.0'
     - r-base
   run:
-    - 'bioconductor-qdnaseq >=1.36.0,<1.37.0'
+    - 'bioconductor-qdnaseq >=1.38.0,<1.39.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-qdnaseq.hg19/post-link.sh b/recipes/bioconductor-qdnaseq.hg19/post-link.sh
index 900524cd9f150..f95428a20b4fd 100644
--- a/recipes/bioconductor-qdnaseq.hg19/post-link.sh
+++ b/recipes/bioconductor-qdnaseq.hg19/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "qdnaseq.hg19-1.30.0"
+installBiocDataPackage.sh "qdnaseq.hg19-1.32.0"
diff --git a/recipes/bioconductor-qdnaseq.mm10/meta.yaml b/recipes/bioconductor-qdnaseq.mm10/meta.yaml
index a39e1bbf1d1de..a14c48bb16146 100644
--- a/recipes/bioconductor-qdnaseq.mm10/meta.yaml
+++ b/recipes/bioconductor-qdnaseq.mm10/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "QDNAseq.mm10" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d7c1a5cec6ee30213a4389b40979b9ef
+  md5: 2d7b80c2bec7146aec28384b7875acca
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-qdnaseq.mm10", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-qdnaseq >=1.36.0,<1.37.0'
+    - 'bioconductor-qdnaseq >=1.38.0,<1.39.0'
     - r-base
   run:
-    - 'bioconductor-qdnaseq >=1.36.0,<1.37.0'
+    - 'bioconductor-qdnaseq >=1.38.0,<1.39.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-qdnaseq.mm10/post-link.sh b/recipes/bioconductor-qdnaseq.mm10/post-link.sh
index 6f9e4ae2877cd..05c6fcc404271 100644
--- a/recipes/bioconductor-qdnaseq.mm10/post-link.sh
+++ b/recipes/bioconductor-qdnaseq.mm10/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "qdnaseq.mm10-1.30.0"
+installBiocDataPackage.sh "qdnaseq.mm10-1.32.0"
diff --git a/recipes/bioconductor-qdnaseq/meta.yaml b/recipes/bioconductor-qdnaseq/meta.yaml
index adfb87e341164..aae4b1e35a592 100644
--- a/recipes/bioconductor-qdnaseq/meta.yaml
+++ b/recipes/bioconductor-qdnaseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "QDNAseq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9d44cd046b4d2157547009cb1fdfa442
+  md5: 589b066b44091955991b4f66ac86b9ee
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-qdnaseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle (>= 1.8.0), BSgenome (>= 1.38.0), digest (>= 0.6.20), GenomeInfoDb (>= 1.6.0), future (>= 1.22.1), parallelly (>= 1.28.1), R.cache (>= 0.13.0), QDNAseq.hg19, QDNAseq.mm10
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-cghbase >=1.60.0,<1.61.0'
-    - 'bioconductor-cghcall >=2.62.0,<2.63.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-cghbase >=1.62.0,<1.63.0'
+    - 'bioconductor-cghcall >=2.64.0,<2.65.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - 'r-future.apply >=1.8.1'
     - 'r-matrixstats >=0.60.0'
     - 'r-r.utils >=2.9.0'
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-cghbase >=1.60.0,<1.61.0'
-    - 'bioconductor-cghcall >=2.62.0,<2.63.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-cghbase >=1.62.0,<1.63.0'
+    - 'bioconductor-cghcall >=2.64.0,<2.65.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - 'r-future.apply >=1.8.1'
     - 'r-matrixstats >=0.60.0'
diff --git a/recipes/bioconductor-qfeatures/meta.yaml b/recipes/bioconductor-qfeatures/meta.yaml
index 720858efa736e..f071f392d180f 100644
--- a/recipes/bioconductor-qfeatures/meta.yaml
+++ b/recipes/bioconductor-qfeatures/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "QFeatures" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,39 +11,40 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a7b1b85fe9194b0d05f0049c1a43ebb8
+  md5: 6833061a024bb9783b7d9a85bc282a88
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-qfeatures", max_pin="x.x") }}'
   noarch: generic
 # Suggests: SingleCellExperiment, Matrix, HDF5Array, msdata, ggplot2, gplots, dplyr, limma, DT, shiny, shinydashboard, testthat, knitr, BiocStyle, rmarkdown, vsn, preprocessCore, matrixStats, imputeLCMD, pcaMethods, impute, norm, ComplexHeatmap
 requirements:
   host:
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-igraph
     - r-lazyeval
     - r-plotly
   run:
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-igraph
     - r-lazyeval
diff --git a/recipes/bioconductor-qmtools/meta.yaml b/recipes/bioconductor-qmtools/meta.yaml
index 2e6747f0bf6f8..8ec0b0553e167 100644
--- a/recipes/bioconductor-qmtools/meta.yaml
+++ b/recipes/bioconductor-qmtools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "qmtools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 3dd6957b8b5e757e4acaa92338fc289e
+  md5: 941d7cbf1dc8c2622fe97bda18a2bf49
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-qmtools", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Rtsne, missForest, vsn, pcaMethods, pls, MsFeatures, impute, imputeLCMD, nlme, testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-heatmaply
@@ -33,9 +34,9 @@ requirements:
     - r-scales
     - r-vim
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-heatmaply
diff --git a/recipes/bioconductor-qpcrnorm/meta.yaml b/recipes/bioconductor-qpcrnorm/meta.yaml
index 11bb25b31ea50..72c295aba9034 100644
--- a/recipes/bioconductor-qpcrnorm/meta.yaml
+++ b/recipes/bioconductor-qpcrnorm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.58.0" %}
+{% set version = "1.60.0" %}
 {% set name = "qpcrNorm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 27b2a54f8a20b56b34273c690e85ca16
+  md5: 43fa513309301e6d8e89fcef668c7b28
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-qpcrnorm", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-qpgraph/meta.yaml b/recipes/bioconductor-qpgraph/meta.yaml
index ea0a0c777fd9d..4287b9ed5aeb4 100644
--- a/recipes/bioconductor-qpgraph/meta.yaml
+++ b/recipes/bioconductor-qpgraph/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.34.2" %}
+{% set version = "2.36.0" %}
 {% set name = "qpgraph" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c8599307a26a9048d0094ea30862da09
+  md5: 10be7ba90f9349fb4de4aa84e6fecaa4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-qpgraph", max_pin="x.x") }}'
 # Suggests: RUnit, BiocGenerics, BiocStyle, genefilter, org.EcK12.eg.db, rlecuyer, snow, Category, GOstats
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-matrix >=1.5-0'
     - r-mvtnorm
@@ -38,17 +39,17 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-matrix >=1.5-0'
     - r-mvtnorm
diff --git a/recipes/bioconductor-qplexanalyzer/meta.yaml b/recipes/bioconductor-qplexanalyzer/meta.yaml
index 10626e9250bcc..6b01c08b890cd 100644
--- a/recipes/bioconductor-qplexanalyzer/meta.yaml
+++ b/recipes/bioconductor-qplexanalyzer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "qPLEXanalyzer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8a45ddc801efbbb143d4bceb0edb67a7
+  md5: d30edcfbf4e355e0c40bd7cf16d396fb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-qplexanalyzer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: gridExtra, knitr, qPLEXdata, rmarkdown, statmod, testthat, UniProt.ws, vdiffr
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-assertthat
     - r-base
     - 'r-dplyr >=1.0.0'
@@ -44,13 +45,13 @@ requirements:
     - r-tidyr
     - r-tidyselect
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
     - r-assertthat
     - r-base
     - 'r-dplyr >=1.0.0'
diff --git a/recipes/bioconductor-qplexdata/meta.yaml b/recipes/bioconductor-qplexdata/meta.yaml
index 02aab7e2337f6..d72d4ac30f891 100644
--- a/recipes/bioconductor-qplexdata/meta.yaml
+++ b/recipes/bioconductor-qplexdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "qPLEXdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2ea69c2e1a071fd94fcb169af5c61422
+  md5: af947f54391fc79c81308890b1e95d96
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-qplexdata", max_pin="x.x") }}'
   noarch: generic
+# Suggests: statmod
 requirements:
   host:
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-qplexanalyzer >=1.18.0,<1.19.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-qplexanalyzer >=1.20.0,<1.21.0'
     - r-base
     - r-dplyr
     - r-knitr
   run:
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-qplexanalyzer >=1.18.0,<1.19.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-qplexanalyzer >=1.20.0,<1.21.0'
     - r-base
     - r-dplyr
     - r-knitr
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-qplexdata/post-link.sh b/recipes/bioconductor-qplexdata/post-link.sh
index b3776da8b113c..5bfe1edb7e282 100644
--- a/recipes/bioconductor-qplexdata/post-link.sh
+++ b/recipes/bioconductor-qplexdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "qplexdata-1.18.0"
+installBiocDataPackage.sh "qplexdata-1.20.0"
diff --git a/recipes/bioconductor-qsea/meta.yaml b/recipes/bioconductor-qsea/meta.yaml
index 25e311d360427..9bafebacc6db4 100644
--- a/recipes/bioconductor-qsea/meta.yaml
+++ b/recipes/bioconductor-qsea/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "qsea" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,45 +11,46 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 8717b734a71f34dbf8b231134752afde
+  md5: 2891ba342f17500cee6391d1f388c3c4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-qsea", max_pin="x.x") }}'
 # Suggests: BSgenome.Hsapiens.UCSC.hg19, MEDIPSData, testthat, BiocStyle, knitr, rmarkdown, BiocManager, MASS
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hmmcopy >=1.42.0,<1.43.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hmmcopy >=1.44.0,<1.45.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-gtools
     - r-zoo
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hmmcopy >=1.42.0,<1.43.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hmmcopy >=1.44.0,<1.45.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-gtools
     - r-zoo
diff --git a/recipes/bioconductor-qsmooth/meta.yaml b/recipes/bioconductor-qsmooth/meta.yaml
index 6ed95bf40b208..659687e2f8c11 100644
--- a/recipes/bioconductor-qsmooth/meta.yaml
+++ b/recipes/bioconductor-qsmooth/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "qsmooth" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 24fdc20a48b8eb73da6122e29420738e
+  md5: 471983d71a4b056b71b10fe15c3f7b1c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-qsmooth", max_pin="x.x") }}'
   noarch: generic
 # Suggests: bodymapRat, quantro, knitr, rmarkdown, BiocStyle, testthat
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-hmisc
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-hmisc
 test:
diff --git a/recipes/bioconductor-qsutils/meta.yaml b/recipes/bioconductor-qsutils/meta.yaml
index 9524de10c95a7..67ebd30438806 100644
--- a/recipes/bioconductor-qsutils/meta.yaml
+++ b/recipes/bioconductor-qsutils/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "QSutils" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a9ad7bfbc8487c40238707a43d8607d3
+  md5: 3a1816762d5d0d26145c352281211f80
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-qsutils", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, ggplot2
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-ape
     - r-base
     - r-psych
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-ape
     - r-base
     - r-psych
diff --git a/recipes/bioconductor-qsvar/meta.yaml b/recipes/bioconductor-qsvar/meta.yaml
index 95ef83f52c2b6..1da9a23ce0762 100644
--- a/recipes/bioconductor-qsvar/meta.yaml
+++ b/recipes/bioconductor-qsvar/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "qsvaR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fda6f9c474c90089486be809da7b2955
+  md5: e9531cc164f93967a5d5d0469d47f7c7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-qsvar", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocFileCache, BiocStyle, covr, knitr, limma, RefManageR, rmarkdown, sessioninfo, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-ggplot2
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-ggplot2
 test:
diff --git a/recipes/bioconductor-qtlexperiment/build.sh b/recipes/bioconductor-qtlexperiment/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-qtlexperiment/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-qtlexperiment/meta.yaml b/recipes/bioconductor-qtlexperiment/meta.yaml
new file mode 100644
index 0000000000000..d7d4285a69261
--- /dev/null
+++ b/recipes/bioconductor-qtlexperiment/meta.yaml
@@ -0,0 +1,59 @@
+{% set version = "1.0.0" %}
+{% set name = "QTLExperiment" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: fe7642e0952c4c68e5417906dfb66fb3
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-qtlexperiment", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: testthat, BiocStyle, knitr, rmarkdown, covr
+requirements:
+  host:
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-ashr
+    - r-base
+    - r-checkmate
+    - r-collapse
+    - r-dplyr
+    - r-rlang
+    - r-tibble
+    - r-tidyr
+    - r-vroom
+  run:
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-ashr
+    - r-base
+    - r-checkmate
+    - r-collapse
+    - r-dplyr
+    - r-rlang
+    - r-tibble
+    - r-tidyr
+    - r-vroom
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'S4 classes for QTL summary statistics and metadata'
+  description: 'QLTExperiment defines an S4 class for storing and manipulating summary statistics from QTL mapping experiments in one or more states. It is based on the ''SummarizedExperiment'' class and contains functions for creating, merging, and subsetting objects. ''QTLExperiment'' also stores experiment metadata and has checks in place to ensure that transformations apply correctly.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-qtlizer/meta.yaml b/recipes/bioconductor-qtlizer/meta.yaml
index eabb7717c1a6e..e151c4ba3c0fc 100644
--- a/recipes/bioconductor-qtlizer/meta.yaml
+++ b/recipes/bioconductor-qtlizer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "Qtlizer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1f1b7e4abafbf2a5ad5516d174fe1605
+  md5: ea7e6227ebf6708e465681021fb77b19
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-qtlizer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, testthat, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-curl
     - r-httr
     - r-stringi
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-curl
     - r-httr
diff --git a/recipes/bioconductor-quantiseqr/meta.yaml b/recipes/bioconductor-quantiseqr/meta.yaml
index ecf946508bbe4..92068f91ebef4 100644
--- a/recipes/bioconductor-quantiseqr/meta.yaml
+++ b/recipes/bioconductor-quantiseqr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "quantiseqr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 5917b18de8ecdfc1d3ad9683c14b0d4c
+  md5: 34cd21d2e59e1f8f58001fdcc49eaf44
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-quantiseqr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: AnnotationDbi, BiocStyle, dplyr, ExperimentHub, GEOquery, knitr, macrophage, org.Hs.eg.db, reshape2, rmarkdown, testthat, tibble
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-limsolve
@@ -31,9 +32,9 @@ requirements:
     - r-rlang
     - r-tidyr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-limsolve
diff --git a/recipes/bioconductor-quantro/meta.yaml b/recipes/bioconductor-quantro/meta.yaml
index 40605f161c433..78285b4ad918e 100644
--- a/recipes/bioconductor-quantro/meta.yaml
+++ b/recipes/bioconductor-quantro/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "quantro" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 24fc384ea9ede169587bac30b26ba294
+  md5: 3e7912df8d9bc50c461074539540f289
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-quantro", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, knitr, RUnit, BiocGenerics, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
     - r-doparallel
     - r-foreach
@@ -30,8 +31,8 @@ requirements:
     - r-iterators
     - r-rcolorbrewer
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
     - r-doparallel
     - r-foreach
diff --git a/recipes/bioconductor-quantsmooth/meta.yaml b/recipes/bioconductor-quantsmooth/meta.yaml
index 601aeceed6b4a..3145b221ce689 100644
--- a/recipes/bioconductor-quantsmooth/meta.yaml
+++ b/recipes/bioconductor-quantsmooth/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.66.0" %}
+{% set version = "1.68.0" %}
 {% set name = "quantsmooth" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 02f6e69a0d90b985b5ea59123514d22f
+  md5: cb47e0040fd219ad15aebf094dd379cd
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-quantsmooth", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-quartpac/meta.yaml b/recipes/bioconductor-quartpac/meta.yaml
index 41719f9389dda..ccaac8ad09882 100644
--- a/recipes/bioconductor-quartpac/meta.yaml
+++ b/recipes/bioconductor-quartpac/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "QuartPAC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: dcfa63b6c83c62a6a6ceabd014aae563
+  md5: 91af5166d133016b9beaa8539f0fcef7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-quartpac", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, rgl
 requirements:
   host:
-    - 'bioconductor-graphpac >=1.42.0,<1.43.0'
-    - 'bioconductor-ipac >=1.44.0,<1.45.0'
-    - 'bioconductor-spacepac >=1.38.0,<1.39.0'
+    - 'bioconductor-graphpac >=1.44.0,<1.45.0'
+    - 'bioconductor-ipac >=1.46.0,<1.47.0'
+    - 'bioconductor-spacepac >=1.40.0,<1.41.0'
     - r-base
     - r-data.table
   run:
-    - 'bioconductor-graphpac >=1.42.0,<1.43.0'
-    - 'bioconductor-ipac >=1.44.0,<1.45.0'
-    - 'bioconductor-spacepac >=1.38.0,<1.39.0'
+    - 'bioconductor-graphpac >=1.44.0,<1.45.0'
+    - 'bioconductor-ipac >=1.46.0,<1.47.0'
+    - 'bioconductor-spacepac >=1.40.0,<1.41.0'
     - r-base
     - r-data.table
 test:
diff --git a/recipes/bioconductor-quasr/meta.yaml b/recipes/bioconductor-quasr/meta.yaml
index ef705eccba5a3..c95104f9a8972 100644
--- a/recipes/bioconductor-quasr/meta.yaml
+++ b/recipes/bioconductor-quasr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.1" %}
+{% set version = "1.42.1" %}
 {% set name = "QuasR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,54 +11,55 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 08e936fb92d8ccfc031fb6ffeea50747
+  md5: ace4fd8823c92add78b78c8e05b366aa
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-quasr", max_pin="x.x") }}'
 # Suggests: Gviz, BiocStyle, GenomicAlignments, Rhisat2, knitr, rmarkdown, covr, testthat
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicfiles >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rbowtie >=1.40.0,<1.41.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicfiles >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rbowtie >=1.42.0,<1.43.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicfiles >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rbowtie >=1.40.0,<1.41.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicfiles >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rbowtie >=1.42.0,<1.43.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-quaternaryprod/meta.yaml b/recipes/bioconductor-quaternaryprod/meta.yaml
index c9c986003df15..335557456ba9f 100644
--- a/recipes/bioconductor-quaternaryprod/meta.yaml
+++ b/recipes/bioconductor-quaternaryprod/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "QuaternaryProd" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ad10afde46e2b65c39b96ba7333cf930
+  md5: 73dfc14934979c18429472a3d6870ece
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-quaternaryprod", max_pin="x.x") }}'
 # Suggests: knitr
 requirements:
   host:
diff --git a/recipes/bioconductor-qubic/meta.yaml b/recipes/bioconductor-qubic/meta.yaml
index 10045a4ed6915..dfff731e76d06 100644
--- a/recipes/bioconductor-qubic/meta.yaml
+++ b/recipes/bioconductor-qubic/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "QUBIC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ef7e2f43d1b1bf14a659a8643a0f5379
+  md5: 728f7aca6c2d2913d424694e9b31c41c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-qubic", max_pin="x.x") }}'
 # Suggests: QUBICdata, qgraph, fields, knitr, rmarkdown
 # SystemRequirements: C++11, Rtools (>= 3.1)
 requirements:
diff --git a/recipes/bioconductor-qubicdata/meta.yaml b/recipes/bioconductor-qubicdata/meta.yaml
index 9e299269570fc..349cf66d0a19b 100644
--- a/recipes/bioconductor-qubicdata/meta.yaml
+++ b/recipes/bioconductor-qubicdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "QUBICdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 47be84c681eabf3ba1851a935762e23a
+  md5: 0670dfaee6f8d532cf3506428a5932c1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-qubicdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-qubicdata/post-link.sh b/recipes/bioconductor-qubicdata/post-link.sh
index 3d91df27a6fab..e44c7a49f8d46 100644
--- a/recipes/bioconductor-qubicdata/post-link.sh
+++ b/recipes/bioconductor-qubicdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "qubicdata-1.28.0"
+installBiocDataPackage.sh "qubicdata-1.30.0"
diff --git a/recipes/bioconductor-qusage/meta.yaml b/recipes/bioconductor-qusage/meta.yaml
index 5d2be31ad1f00..b458324664fca 100644
--- a/recipes/bioconductor-qusage/meta.yaml
+++ b/recipes/bioconductor-qusage/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.34.0" %}
+{% set version = "2.36.0" %}
 {% set name = "qusage" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d98b2598bdae73d4c17fe40586dd3afb
+  md5: f4675daa1494bbf070a084d05a2e672b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-qusage", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-emmeans
     - r-fftw
     - r-nlme
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-emmeans
     - r-fftw
diff --git a/recipes/bioconductor-qvalue/meta.yaml b/recipes/bioconductor-qvalue/meta.yaml
index 2425f0321e6ae..255657b20155b 100644
--- a/recipes/bioconductor-qvalue/meta.yaml
+++ b/recipes/bioconductor-qvalue/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.32.0" %}
+{% set version = "2.34.0" %}
 {% set name = "qvalue" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 380fe077649cd719ccc6abdf683f2be7
+  md5: d6d57a60a814587681cf438b4e6ee9bc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-qvalue", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
diff --git a/recipes/bioconductor-r10kcod.db/meta.yaml b/recipes/bioconductor-r10kcod.db/meta.yaml
index 4a52c7c605332..fe56f9587a20a 100644
--- a/recipes/bioconductor-r10kcod.db/meta.yaml
+++ b/recipes/bioconductor-r10kcod.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.4.0" %}
 {% set name = "r10kcod.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 4a7a25fee64294cfb5adccaa6cf28772
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-r10kcod.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-r3cpet/meta.yaml b/recipes/bioconductor-r3cpet/meta.yaml
index 4dbb3f662a152..8e04b83625ff9 100644
--- a/recipes/bioconductor-r3cpet/meta.yaml
+++ b/recipes/bioconductor-r3cpet/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "R3CPET" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7010509ac5d68785413f584462b19cd5
+  md5: 4eaced963afa114068f2c36982e1add3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-r3cpet", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, TxDb.Hsapiens.UCSC.hg19.knownGene, biovizBase, biomaRt, AnnotationDbi, org.Hs.eg.db, shiny, ChIPpeakAnno
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-clvalid
     - r-data.table
@@ -39,12 +40,12 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-clvalid
     - r-data.table
diff --git a/recipes/bioconductor-r3cseq/meta.yaml b/recipes/bioconductor-r3cseq/meta.yaml
index b84ee7f76b7b4..cf83b123ff451 100644
--- a/recipes/bioconductor-r3cseq/meta.yaml
+++ b/recipes/bioconductor-r3cseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "r3Cseq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7106a2893f7db6ba10481edcfc36186d
+  md5: 548b2dc3319fc848c932bcb142edbd61
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-r3cseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Mmusculus.UCSC.mm9.masked, BSgenome.Mmusculus.UCSC.mm10.masked, BSgenome.Hsapiens.UCSC.hg18.masked, BSgenome.Hsapiens.UCSC.hg19.masked, BSgenome.Rnorvegicus.UCSC.rn5.masked
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-data.table
     - r-rcolorbrewer
     - r-sqldf
     - r-vgam
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-data.table
     - r-rcolorbrewer
diff --git a/recipes/bioconductor-r453plus1toolbox/meta.yaml b/recipes/bioconductor-r453plus1toolbox/meta.yaml
index 8df159384666f..8870d430d6725 100644
--- a/recipes/bioconductor-r453plus1toolbox/meta.yaml
+++ b/recipes/bioconductor-r453plus1toolbox/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.50.0" %}
+{% set version = "1.52.0" %}
 {% set name = "R453Plus1Toolbox" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2e33a0e2ede03b423ce99fda54bcc54b
+  md5: 2d7ad69c3b68b4a635129d296599c210
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-r453plus1toolbox", max_pin="x.x") }}'
 # Suggests: rtracklayer, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Scerevisiae.UCSC.sacCer2
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-r2html
     - r-teachingdemos
@@ -40,19 +41,19 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-r2html
     - r-teachingdemos
diff --git a/recipes/bioconductor-r4rna/meta.yaml b/recipes/bioconductor-r4rna/meta.yaml
index 4b298c5b3f270..5cb61ea244f9a 100644
--- a/recipes/bioconductor-r4rna/meta.yaml
+++ b/recipes/bioconductor-r4rna/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "R4RNA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 29316712c46983e36ff86e8bd0ebd2a4
+  md5: a77903559307ab481671650646dd85e5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-r4rna", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-radiogx/meta.yaml b/recipes/bioconductor-radiogx/meta.yaml
index 0547a675591b5..6aa2d3edaaaa0 100644
--- a/recipes/bioconductor-radiogx/meta.yaml
+++ b/recipes/bioconductor-radiogx/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.4.0" %}
+{% set version = "2.6.0" %}
 {% set name = "RadioGx" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 07e2cfb998c9754ffec01a7ca0dae866
+  md5: a7e06ef2f71341c5252a5e2b874fdf17
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-radiogx", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, BiocStyle, knitr, pander, markdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-coregx >=2.4.0,<2.5.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-coregx >=2.6.0,<2.7.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - r-catools
@@ -38,12 +39,12 @@ requirements:
     - r-reshape2
     - r-scales
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-coregx >=2.4.0,<2.5.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-coregx >=2.6.0,<2.7.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - r-catools
diff --git a/recipes/bioconductor-rae230a.db/meta.yaml b/recipes/bioconductor-rae230a.db/meta.yaml
index 1c69dfc10cf40..afeee8e0950b8 100644
--- a/recipes/bioconductor-rae230a.db/meta.yaml
+++ b/recipes/bioconductor-rae230a.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "rae230a.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: a2a80af1669fc038a64effbf5a4b246d
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rae230a.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rae230acdf/meta.yaml b/recipes/bioconductor-rae230acdf/meta.yaml
index 912b6a851adcc..650f0d564ab13 100644
--- a/recipes/bioconductor-rae230acdf/meta.yaml
+++ b/recipes/bioconductor-rae230acdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "rae230acdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 6f2281124e1be164d5fd599e84f6adbc
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rae230acdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rae230aprobe/meta.yaml b/recipes/bioconductor-rae230aprobe/meta.yaml
index 63b5b3e81ddd0..b7441cbf4679b 100644
--- a/recipes/bioconductor-rae230aprobe/meta.yaml
+++ b/recipes/bioconductor-rae230aprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "rae230aprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 6f2d77e1d9c1e3afb96ef78b3202bb0b
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rae230aprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rae230b.db/meta.yaml b/recipes/bioconductor-rae230b.db/meta.yaml
index 82efc0b4d7aea..0273888d9117e 100644
--- a/recipes/bioconductor-rae230b.db/meta.yaml
+++ b/recipes/bioconductor-rae230b.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "rae230b.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 4f0474ed22bf5ebd932dd6a4d9573551
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rae230b.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rae230bcdf/meta.yaml b/recipes/bioconductor-rae230bcdf/meta.yaml
index 6f52923f1d90e..38c382de21f3c 100644
--- a/recipes/bioconductor-rae230bcdf/meta.yaml
+++ b/recipes/bioconductor-rae230bcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "rae230bcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: bd61c17402e9c04be1000c16e0356618
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rae230bcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rae230bprobe/meta.yaml b/recipes/bioconductor-rae230bprobe/meta.yaml
index acd25efbdb3a0..242c7cdb4229c 100644
--- a/recipes/bioconductor-rae230bprobe/meta.yaml
+++ b/recipes/bioconductor-rae230bprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "rae230bprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 7bdb3a07e1f00de8ff510a69bdac4c53
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rae230bprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-raer/build.sh b/recipes/bioconductor-raer/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-raer/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-raer/meta.yaml b/recipes/bioconductor-raer/meta.yaml
new file mode 100644
index 0000000000000..61beb51eb00aa
--- /dev/null
+++ b/recipes/bioconductor-raer/meta.yaml
@@ -0,0 +1,80 @@
+{% set version = "1.0.0" %}
+{% set name = "raer" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
+  md5: 0b5c050626ce21756f90b4f9c967465b
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-raer", max_pin="x.x") }}'
+# Suggests: testthat (>= 3.0.0), knitr, DESeq2, edgeR, limma, rmarkdown, BiocStyle, ComplexHeatmap, TxDb.Hsapiens.UCSC.hg38.knownGene, SNPlocs.Hsapiens.dbSNP144.GRCh38, BSgenome.Hsapiens.NCBI.GRCh38, scater, scran, scuttle, AnnotationHub, covr, raerdata
+# SystemRequirements: GNU make
+requirements:
+  host:
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-cli
+    - r-data.table
+    - r-matrix
+    - r-r.utils
+    - libblas
+    - liblapack
+  run:
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-cli
+    - r-data.table
+    - r-matrix
+    - r-r.utils
+  build:
+    - {{ compiler('c') }}
+    - make
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'MIT + file LICENSE'
+  summary: 'RNA editing tools in R'
+  description: 'Toolkit for identification and statistical testing of RNA editing signals from within R. Provides support for identifying sites from bulk-RNA and single cell RNA-seq datasets, and general methods for extraction of allelic read counts from alignment files. Facilitates annotation and exploratory analysis of editing signals using Bioconductor packages and resources.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-raerdata/meta.yaml b/recipes/bioconductor-raerdata/meta.yaml
new file mode 100644
index 0000000000000..a93eb084ad4ba
--- /dev/null
+++ b/recipes/bioconductor-raerdata/meta.yaml
@@ -0,0 +1,49 @@
+{% set version = "1.0.0" %}
+{% set name = "raerdata" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
+  md5: 8f250d12f89396f8d4351da5045cf22c
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-raerdata", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: rmarkdown, knitr, BiocStyle, testthat (>= 3.0.0)
+requirements:
+  host:
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - r-base
+  run:
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - r-base
+    - curl
+    - 'bioconductor-data-packages >=20231203'
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/html/{{ name }}.html'
+  license: 'MIT + file LICENSE'
+  summary: 'A collection of datasets for use with raer package'
+  description: 'raerdata is an ExperimentHub package that provides a collection of files useful for demostrating functionality in the raer package. Datasets include 10x genomics scRNA-seq, bulk RNA-seq, and paired whole-genome and RNA-seq data. Additionally databases of human and mouse RNA editing sites are provided.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-raerdata/post-link.sh b/recipes/bioconductor-raerdata/post-link.sh
new file mode 100644
index 0000000000000..f8c5dd141a4fe
--- /dev/null
+++ b/recipes/bioconductor-raerdata/post-link.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+installBiocDataPackage.sh "raerdata-1.0.0"
diff --git a/recipes/bioconductor-raerdata/pre-unlink.sh b/recipes/bioconductor-raerdata/pre-unlink.sh
new file mode 100644
index 0000000000000..fe52b6b760486
--- /dev/null
+++ b/recipes/bioconductor-raerdata/pre-unlink.sh
@@ -0,0 +1 @@
+R CMD REMOVE --library=$PREFIX/lib/R/library/ raerdata
diff --git a/recipes/bioconductor-raex10stprobeset.db/meta.yaml b/recipes/bioconductor-raex10stprobeset.db/meta.yaml
index 5a0fae703d91b..27cc03aa38783 100644
--- a/recipes/bioconductor-raex10stprobeset.db/meta.yaml
+++ b/recipes/bioconductor-raex10stprobeset.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "raex10stprobeset.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: a386809ea8da340f315e378fa329b3ac
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-raex10stprobeset.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-raex10sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-raex10sttranscriptcluster.db/meta.yaml
index e131376b0b124..98b38f78e2267 100644
--- a/recipes/bioconductor-raex10sttranscriptcluster.db/meta.yaml
+++ b/recipes/bioconductor-raex10sttranscriptcluster.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "raex10sttranscriptcluster.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 3a0c511a1073c67172770bc3e4b842b5
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-raex10sttranscriptcluster.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-raexexonprobesetlocation/meta.yaml b/recipes/bioconductor-raexexonprobesetlocation/meta.yaml
index e536a6c1c1889..370160c4212b6 100644
--- a/recipes/bioconductor-raexexonprobesetlocation/meta.yaml
+++ b/recipes/bioconductor-raexexonprobesetlocation/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.15.0" %}
 {% set name = "RaExExonProbesetLocation" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: d547bcd30685495283b32f0f86ecc79b
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-raexexonprobesetlocation", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ragene10stprobeset.db/meta.yaml b/recipes/bioconductor-ragene10stprobeset.db/meta.yaml
index a84b92471aa9b..d5ca4b4037b08 100644
--- a/recipes/bioconductor-ragene10stprobeset.db/meta.yaml
+++ b/recipes/bioconductor-ragene10stprobeset.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "ragene10stprobeset.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 358685c380b37027a064924069b9ee40
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ragene10stprobeset.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ragene10sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-ragene10sttranscriptcluster.db/meta.yaml
index b491aacb14471..4169739b0d7d0 100644
--- a/recipes/bioconductor-ragene10sttranscriptcluster.db/meta.yaml
+++ b/recipes/bioconductor-ragene10sttranscriptcluster.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "ragene10sttranscriptcluster.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 5ff95454493a72bfa2546d82d32fbec1
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ragene10sttranscriptcluster.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ragene10stv1cdf/meta.yaml b/recipes/bioconductor-ragene10stv1cdf/meta.yaml
index 1797ced105faf..f9095368dcbb5 100644
--- a/recipes/bioconductor-ragene10stv1cdf/meta.yaml
+++ b/recipes/bioconductor-ragene10stv1cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "ragene10stv1cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: df696e9dbf5b3f2761b6a0a5914be058
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ragene10stv1cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ragene10stv1probe/meta.yaml b/recipes/bioconductor-ragene10stv1probe/meta.yaml
index 163ed6d32bf18..36db272a8a25c 100644
--- a/recipes/bioconductor-ragene10stv1probe/meta.yaml
+++ b/recipes/bioconductor-ragene10stv1probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "ragene10stv1probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 94978b6efb075aacf31ccdc8000e40fa
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ragene10stv1probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ragene11stprobeset.db/meta.yaml b/recipes/bioconductor-ragene11stprobeset.db/meta.yaml
index 945be5c32fcb5..9605b8d84ad9a 100644
--- a/recipes/bioconductor-ragene11stprobeset.db/meta.yaml
+++ b/recipes/bioconductor-ragene11stprobeset.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "ragene11stprobeset.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 86f7704c4852c514b3bc3221f7692ba3
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ragene11stprobeset.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ragene11sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-ragene11sttranscriptcluster.db/meta.yaml
index e90c54b294548..a4a85cda35e82 100644
--- a/recipes/bioconductor-ragene11sttranscriptcluster.db/meta.yaml
+++ b/recipes/bioconductor-ragene11sttranscriptcluster.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "ragene11sttranscriptcluster.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: f7fbe318547f911b520415a90b3440e9
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ragene11sttranscriptcluster.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ragene20stprobeset.db/meta.yaml b/recipes/bioconductor-ragene20stprobeset.db/meta.yaml
index 1fbbb3c6d6e9e..67108c15a1dd4 100644
--- a/recipes/bioconductor-ragene20stprobeset.db/meta.yaml
+++ b/recipes/bioconductor-ragene20stprobeset.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "ragene20stprobeset.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 23a43899a22078f4c13b7b1d45176319
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ragene20stprobeset.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ragene20sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-ragene20sttranscriptcluster.db/meta.yaml
index 6a38b64f3ce7c..28fc801a28399 100644
--- a/recipes/bioconductor-ragene20sttranscriptcluster.db/meta.yaml
+++ b/recipes/bioconductor-ragene20sttranscriptcluster.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "ragene20sttranscriptcluster.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b44c5f6ac2b2e3eb4d820d08f7a38644
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ragene20sttranscriptcluster.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ragene21stprobeset.db/meta.yaml b/recipes/bioconductor-ragene21stprobeset.db/meta.yaml
index 8739c96546c4c..0b4be17e863db 100644
--- a/recipes/bioconductor-ragene21stprobeset.db/meta.yaml
+++ b/recipes/bioconductor-ragene21stprobeset.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "ragene21stprobeset.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 6451885f99ce3873d5d4dbacdf968181
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ragene21stprobeset.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ragene21sttranscriptcluster.db/meta.yaml b/recipes/bioconductor-ragene21sttranscriptcluster.db/meta.yaml
index 0aae6a57270bb..06c45bcb7dee6 100644
--- a/recipes/bioconductor-ragene21sttranscriptcluster.db/meta.yaml
+++ b/recipes/bioconductor-ragene21sttranscriptcluster.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "ragene21sttranscriptcluster.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 6ffe13e1594add0a5169b2083b608336
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ragene21sttranscriptcluster.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-raggedexperiment/meta.yaml b/recipes/bioconductor-raggedexperiment/meta.yaml
index b27b8f891f221..5caad78ba3f76 100644
--- a/recipes/bioconductor-raggedexperiment/meta.yaml
+++ b/recipes/bioconductor-raggedexperiment/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "RaggedExperiment" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 05b6897d69250f287a753601e550080f
+  md5: 5704ce0834ff2770c489c3882ef4acec
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-raggedexperiment", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, MultiAssayExperiment
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocbaseutils >=1.4.0,<1.5.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocbaseutils >=1.4.0,<1.5.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
 test:
diff --git a/recipes/bioconductor-raids/build.sh b/recipes/bioconductor-raids/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-raids/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-raids/meta.yaml b/recipes/bioconductor-raids/meta.yaml
new file mode 100644
index 0000000000000..507252a73a248
--- /dev/null
+++ b/recipes/bioconductor-raids/meta.yaml
@@ -0,0 +1,66 @@
+{% set version = "1.0.0" %}
+{% set name = "RAIDS" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 768d047b002bb44e1178d69233878818
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-raids", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: testthat, knitr, rmarkdown, BiocStyle, withr, GenomeInfoDb, BSgenome.Hsapiens.UCSC.hg38, EnsDb.Hsapiens.v86
+requirements:
+  host:
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-genesis >=2.32.0,<2.33.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-snprelate >=1.36.0,<1.37.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
+    - r-base
+    - r-class
+    - r-proc
+    - r-rlang
+  run:
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-genesis >=2.32.0,<2.33.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-snprelate >=1.36.0,<1.37.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
+    - r-base
+    - r-class
+    - r-proc
+    - r-rlang
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'Apache License (>= 2)'
+  summary: 'Accurate Inference of Genetic Ancestry from Cancer Sequences'
+  description: 'This package implements specialized algorithms that enable genetic ancestry inference from various cancer sequences sources (RNA, Exome and Whole-Genome sequences). This package also implements a simulation algorithm that generates synthetic cancer-derived data. This code and analysis pipeline was designed and developed for the following publication: Belleau, P et al. Genetic Ancestry Inference from Cancer-Derived Molecular Data across Genomic and Transcriptomic Platforms. Cancer Res 1 January 2023; 83 (1): 49–58.'
+
diff --git a/recipes/bioconductor-rain/meta.yaml b/recipes/bioconductor-rain/meta.yaml
index 7d79f13920b07..f06f49eb3f548 100644
--- a/recipes/bioconductor-rain/meta.yaml
+++ b/recipes/bioconductor-rain/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "rain" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 9749ba6b883017a62470ef1ba33a5148
+  md5: e523c08337422230710fd1f2a5a392cd
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rain", max_pin="x.x") }}'
   noarch: generic
 # Suggests: lattice, BiocStyle
 requirements:
   host:
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
     - r-gmp
   run:
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
     - r-gmp
 test:
diff --git a/recipes/bioconductor-ramr/meta.yaml b/recipes/bioconductor-ramr/meta.yaml
index 12bb7b578b6a0..196dcea668264 100644
--- a/recipes/bioconductor-ramr/meta.yaml
+++ b/recipes/bioconductor-ramr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "ramr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d61b7ccd6f2bf988a00a4e95d9307653
+  md5: 6a6278f2ad74018661b9985eb978e90c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ramr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, knitr, rmarkdown, gridExtra, annotatr, LOLA, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-doparallel
     - r-dorng
@@ -35,10 +36,10 @@ requirements:
     - r-matrixstats
     - r-reshape2
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-doparallel
     - r-dorng
diff --git a/recipes/bioconductor-ramwas/meta.yaml b/recipes/bioconductor-ramwas/meta.yaml
index 045ea8fdde6ff..233f285fb2a8e 100644
--- a/recipes/bioconductor-ramwas/meta.yaml
+++ b/recipes/bioconductor-ramwas/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "ramwas" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: be4fe215633bd48a9802b7ad6a22a39f
+  md5: ccbff0a1c4bd31c8ceb9d2641d6608d2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ramwas", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, pander, BiocStyle, BSgenome.Ecoli.NCBI.20080805
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-digest
     - r-filematrix
@@ -33,11 +34,11 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-digest
     - r-filematrix
diff --git a/recipes/bioconductor-randomwalkrestartmh/meta.yaml b/recipes/bioconductor-randomwalkrestartmh/meta.yaml
index c96acc8e7ac67..aad822b818c73 100644
--- a/recipes/bioconductor-randomwalkrestartmh/meta.yaml
+++ b/recipes/bioconductor-randomwalkrestartmh/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "RandomWalkRestartMH" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 334449d593d86853a0203fcb7ccb4d6d
+  md5: ace5e6d73a365094a41a864a47deb893
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-randomwalkrestartmh", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat
 requirements:
diff --git a/recipes/bioconductor-randpack/meta.yaml b/recipes/bioconductor-randpack/meta.yaml
index a62a77797a627..626ee120a1935 100644
--- a/recipes/bioconductor-randpack/meta.yaml
+++ b/recipes/bioconductor-randpack/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "randPack" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 074bd51f6b64411a009463888a08ffe4
+  md5: 71791ade28f58d981a510c8b660ae1e7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-randpack", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-randrotation/meta.yaml b/recipes/bioconductor-randrotation/meta.yaml
index d05d67a6aa7d8..5d4447925d490 100644
--- a/recipes/bioconductor-randrotation/meta.yaml
+++ b/recipes/bioconductor-randrotation/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "randRotation" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: af48011b48390b6567ccda6141ee4f12
+  md5: a05faf1fe582450a789fc2d58960fa97
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-randrotation", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocParallel, lme4, nlme, rmarkdown, BiocStyle, testthat (>= 2.1.0), limma, sva
 requirements:
diff --git a/recipes/bioconductor-rankprod/meta.yaml b/recipes/bioconductor-rankprod/meta.yaml
index 159db0a61e95b..2ebbe68585c00 100644
--- a/recipes/bioconductor-rankprod/meta.yaml
+++ b/recipes/bioconductor-rankprod/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.26.0" %}
+{% set version = "3.28.0" %}
 {% set name = "RankProd" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6fa483ed8d64249e1280088bc1fd78a4
+  md5: 39f3eba64601984ad265d91f3a150180
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rankprod", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-raresim/meta.yaml b/recipes/bioconductor-raresim/meta.yaml
index edae4c455e23d..fdd6a7e5a167e 100644
--- a/recipes/bioconductor-raresim/meta.yaml
+++ b/recipes/bioconductor-raresim/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "RAREsim" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a227aacb1583b3ea793e127a30e6796f
+  md5: 6ec5b86f348e2d4ffb365da80651041e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-raresim", max_pin="x.x") }}'
   noarch: generic
 # Suggests: markdown, ggplot2, BiocStyle, rmarkdown, knitr, testthat (>= 3.0.0)
 requirements:
diff --git a/recipes/bioconductor-rarevariantvis/meta.yaml b/recipes/bioconductor-rarevariantvis/meta.yaml
index e41ef7739083e..a55ff5d23bcd9 100644
--- a/recipes/bioconductor-rarevariantvis/meta.yaml
+++ b/recipes/bioconductor-rarevariantvis/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.28.0" %}
+{% set version = "2.30.0" %}
 {% set name = "RareVariantVis" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,46 +11,47 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 679826e7c9df1bbb563a740f197fa2c2
+  md5: 2157172a825bbc826d5c2f3d17a41987
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rarevariantvis", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - 'bioconductor-phastcons100way.ucsc.hg19 >=3.7.0,<3.8.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-googlevis
     - r-gtools
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - 'bioconductor-phastcons100way.ucsc.hg19 >=3.7.0,<3.8.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-googlevis
     - r-gtools
diff --git a/recipes/bioconductor-rarr/meta.yaml b/recipes/bioconductor-rarr/meta.yaml
index 46ecddaef2c4d..5f28e2f9eb0be 100644
--- a/recipes/bioconductor-rarr/meta.yaml
+++ b/recipes/bioconductor-rarr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "Rarr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,13 +11,14 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5d1368ed8413be31e3d59401f1642991
+  md5: 94af864ae3de3557840993a429944ea2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
-# Suggests: BiocStyle, covr, knitr, tinytest
+  run_exports: '{{ pin_subpackage("bioconductor-rarr", max_pin="x.x") }}'
+# Suggests: BiocStyle, covr, knitr, tinytest, mockery
 # SystemRequirements: GNU make
 requirements:
   host:
diff --git a/recipes/bioconductor-rat.db0/meta.yaml b/recipes/bioconductor-rat.db0/meta.yaml
index 9664ceae6fa59..97008b6343456 100644
--- a/recipes/bioconductor-rat.db0/meta.yaml
+++ b/recipes/bioconductor-rat.db0/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "rat.db0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 86993da680822a050e85f1208713f3c8
+  md5: cde666f86ec7b61beb8cf1037511f977
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rat.db0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rat.db0/post-link.sh b/recipes/bioconductor-rat.db0/post-link.sh
index c3e3d4f5e5bbb..b40a101d33dc3 100644
--- a/recipes/bioconductor-rat.db0/post-link.sh
+++ b/recipes/bioconductor-rat.db0/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rat.db0-3.17.0"
+installBiocDataPackage.sh "rat.db0-3.18.0"
diff --git a/recipes/bioconductor-rat2302.db/meta.yaml b/recipes/bioconductor-rat2302.db/meta.yaml
index 3837f56dc958d..2a342615aa394 100644
--- a/recipes/bioconductor-rat2302.db/meta.yaml
+++ b/recipes/bioconductor-rat2302.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "rat2302.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b1404d8a16fec681f0fd682589a685ea
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rat2302.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rat2302cdf/meta.yaml b/recipes/bioconductor-rat2302cdf/meta.yaml
index 4aaf5fcb18bd5..043a6a2d81dd8 100644
--- a/recipes/bioconductor-rat2302cdf/meta.yaml
+++ b/recipes/bioconductor-rat2302cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "rat2302cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: a033730f79a11d45b4cd7e7c520f8052
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rat2302cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rat2302frmavecs/meta.yaml b/recipes/bioconductor-rat2302frmavecs/meta.yaml
index 24f0971b2d763..5eb5dfee57f4f 100644
--- a/recipes/bioconductor-rat2302frmavecs/meta.yaml
+++ b/recipes/bioconductor-rat2302frmavecs/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.11" %}
 {% set name = "rat2302frmavecs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 44d9f00c2f3806899c6605d1ba274066
 build:
-  number: 10
+  number: 11
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rat2302frmavecs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-frma >=1.52.0,<1.53.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-frma >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-frma >=1.52.0,<1.53.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-frma >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rat2302probe/meta.yaml b/recipes/bioconductor-rat2302probe/meta.yaml
index 531f316a7171b..e2c76e6e9f797 100644
--- a/recipes/bioconductor-rat2302probe/meta.yaml
+++ b/recipes/bioconductor-rat2302probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "rat2302probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: d1d9215e52b9e845cc4d7c902536e0d6
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rat2302probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ratchrloc/meta.yaml b/recipes/bioconductor-ratchrloc/meta.yaml
index c07eec45d96dc..d3fe6a6509e9a 100644
--- a/recipes/bioconductor-ratchrloc/meta.yaml
+++ b/recipes/bioconductor-ratchrloc/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.1.6" %}
 {% set name = "ratCHRLOC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 6fecff4821a5a47e3bd38a2ff78173d5
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ratchrloc", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rattoxfxcdf/meta.yaml b/recipes/bioconductor-rattoxfxcdf/meta.yaml
index d529581444b92..73dd35e04127f 100644
--- a/recipes/bioconductor-rattoxfxcdf/meta.yaml
+++ b/recipes/bioconductor-rattoxfxcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "rattoxfxcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 912d0fa424615fcd92773ed174d5efdd
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rattoxfxcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rattoxfxprobe/meta.yaml b/recipes/bioconductor-rattoxfxprobe/meta.yaml
index 525a470b0ffa1..f32aeb6966e55 100644
--- a/recipes/bioconductor-rattoxfxprobe/meta.yaml
+++ b/recipes/bioconductor-rattoxfxprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "rattoxfxprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 202791c72e8c956b9854fa4d9ba67a24
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rattoxfxprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rattus.norvegicus/meta.yaml b/recipes/bioconductor-rattus.norvegicus/meta.yaml
index 5902d0a0bb074..3d57f0f02545d 100644
--- a/recipes/bioconductor-rattus.norvegicus/meta.yaml
+++ b/recipes/bioconductor-rattus.norvegicus/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.1" %}
 {% set name = "Rattus.norvegicus" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,30 +13,31 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 5692fdeb0bc7f94e1db35f097cad99a9
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rattus.norvegicus", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-organismdbi >=1.42.0,<1.43.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-organismdbi >=1.44.0,<1.45.0'
     - 'bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene >=3.12.0,<3.13.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-organismdbi >=1.42.0,<1.43.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-organismdbi >=1.44.0,<1.45.0'
     - 'bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene >=3.12.0,<3.13.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rawrr/meta.yaml b/recipes/bioconductor-rawrr/meta.yaml
index 1bfc3b3af36a5..08f497e744570 100644
--- a/recipes/bioconductor-rawrr/meta.yaml
+++ b/recipes/bioconductor-rawrr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.1" %}
+{% set version = "1.10.2" %}
 {% set name = "rawrr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: def45f50cec22561ffbc1022eed93032
+  md5: 42213a8a733115af719162fc1a72d6a1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rawrr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle (>= 2.5), ExperimentHub, knitr, protViz (>= 0.7), rmarkdown, tartare (>= 1.5), testthat
 # SystemRequirements: mono-runtime 4.x or higher (including System.Data library) on Linux/macOS, .Net Framework (>= 4.5.1) on Microsoft Windows.
diff --git a/recipes/bioconductor-rbcbook1/meta.yaml b/recipes/bioconductor-rbcbook1/meta.yaml
index cfead0d6598f5..59907071a6fca 100644
--- a/recipes/bioconductor-rbcbook1/meta.yaml
+++ b/recipes/bioconductor-rbcbook1/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.68.0" %}
+{% set version = "1.70.0" %}
 {% set name = "RbcBook1" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 849ecc7e9f264ce9bacce3f8a6d64c3f
+  md5: 16f681613c1c4d309b032c64cfe18c4a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rbcbook1", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-rpart
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-rpart
 test:
diff --git a/recipes/bioconductor-rbec/meta.yaml b/recipes/bioconductor-rbec/meta.yaml
index f657f26389496..92930222940ff 100644
--- a/recipes/bioconductor-rbec/meta.yaml
+++ b/recipes/bioconductor-rbec/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "Rbec" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,16 +11,17 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a954c964eccec52381d10c1344b4796c
+  md5: f295d8ade5faf2c0b770f2b075262116
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rbec", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-dada2 >=1.28.0,<1.29.0'
+    - 'bioconductor-dada2 >=1.30.0,<1.31.0'
     - r-base
     - r-doparallel
     - r-foreach
@@ -30,7 +31,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-dada2 >=1.28.0,<1.29.0'
+    - 'bioconductor-dada2 >=1.30.0,<1.31.0'
     - r-base
     - r-doparallel
     - r-foreach
diff --git a/recipes/bioconductor-rbgl/meta.yaml b/recipes/bioconductor-rbgl/meta.yaml
index 02005957b371d..6dea29c5ac9ad 100644
--- a/recipes/bioconductor-rbgl/meta.yaml
+++ b/recipes/bioconductor-rbgl/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.76.0" %}
+{% set version = "1.78.0" %}
 {% set name = "RBGL" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6f8bf9943c7d1fbf6ce2e027109a8b4f
+  md5: a18b5ad5c49f058b6f65a2bd0a4274d1
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rbgl", max_pin="x.x") }}'
 # Suggests: Rgraphviz, XML, RUnit, BiocGenerics, BiocStyle, knitr
 requirements:
   host:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-bh
     - libblas
     - liblapack
   run:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-bh
   build:
@@ -42,6 +43,8 @@ about:
   summary: 'An interface to the BOOST graph library'
   description: 'A fairly extensive and comprehensive interface to the graph algorithms contained in the BOOST library.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:rbgl
     - doi:10.1093/bioinformatics/bth458
diff --git a/recipes/bioconductor-rbioformats/meta.yaml b/recipes/bioconductor-rbioformats/meta.yaml
index c75d3f2a6b06c..0b180c33b55f5 100644
--- a/recipes/bioconductor-rbioformats/meta.yaml
+++ b/recipes/bioconductor-rbioformats/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "RBioFormats" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c2078329911e3b0b5979225dd524f28f
+  md5: cd83827dd164a9b44ba3d0d08fd77b38
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rbioformats", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, testthat, xml2
 # SystemRequirements: Java (>= 1.7)
 requirements:
   host:
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-rjava >=0.9-6'
     - openjdk
   run:
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-rjava >=0.9-6'
     - openjdk
diff --git a/recipes/bioconductor-rbioinf/meta.yaml b/recipes/bioconductor-rbioinf/meta.yaml
index 0e6032254ba56..9cf94f1be6a6b 100644
--- a/recipes/bioconductor-rbioinf/meta.yaml
+++ b/recipes/bioconductor-rbioinf/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.60.0" %}
+{% set version = "1.62.0" %}
 {% set name = "RBioinf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a706a1b48cbed097dcb5ab1266fe0e90
+  md5: ec036823fe8f50106f37436eec716add
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rbioinf", max_pin="x.x") }}'
 # Suggests: Rgraphviz
 requirements:
   host:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-rbiopaxparser/meta.yaml b/recipes/bioconductor-rbiopaxparser/meta.yaml
index 104a20d71ef31..b48a0a08c3e8a 100644
--- a/recipes/bioconductor-rbiopaxparser/meta.yaml
+++ b/recipes/bioconductor-rbiopaxparser/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.40.0" %}
+{% set version = "2.42.0" %}
 {% set name = "rBiopaxParser" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ee84f721ce8bafac32c3c847500b9481
+  md5: 53e24a8896bf17bd56fe48d62427eb33
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rbiopaxparser", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Rgraphviz, RCurl, graph, RUnit, BiocGenerics, RBGL, igraph
 requirements:
diff --git a/recipes/bioconductor-rbm/meta.yaml b/recipes/bioconductor-rbm/meta.yaml
index 6d455e14c5162..216f62b73d664 100644
--- a/recipes/bioconductor-rbm/meta.yaml
+++ b/recipes/bioconductor-rbm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "RBM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 836597b482a58256a1e2021fd9b411ff
+  md5: 4ae63966d6e9cfd1d3ce001f65a02abe
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rbm", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-rbowtie/meta.yaml b/recipes/bioconductor-rbowtie/meta.yaml
index 207599443dbf9..9263ed9e3b853 100644
--- a/recipes/bioconductor-rbowtie/meta.yaml
+++ b/recipes/bioconductor-rbowtie/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "Rbowtie" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5421ecbf4cfa6eb177dc24e71ab9360c
+  md5: 409fc50371b1eaf9be2af500aff05249
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rbowtie", max_pin="x.x") }}'
 # Suggests: testthat, parallel, BiocStyle, knitr, rmarkdown
 # SystemRequirements: GNU make
 requirements:
diff --git a/recipes/bioconductor-rbowtie2/meta.yaml b/recipes/bioconductor-rbowtie2/meta.yaml
index 70f57c0c2e4ab..37affc8af1f48 100644
--- a/recipes/bioconductor-rbowtie2/meta.yaml
+++ b/recipes/bioconductor-rbowtie2/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.6.0" %}
+{% set version = "2.8.0" %}
 {% set name = "Rbowtie2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4410870693059284f2d83f0e66f0c343
+  md5: dbba503f3134fdb9c6521c060ec2d5fc
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rbowtie2", max_pin="x.x") }}'
 # Suggests: knitr, testthat (>= 3.0.0), rmarkdown
 # SystemRequirements: C++11, GNU make, samtools
 requirements:
   host:
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-magrittr
     - libblas
     - liblapack
-    - zlib
   run:
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-magrittr
-    - zlib
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
@@ -41,8 +40,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'GPL (>= 3)'
+  license: 'GPL-3.0-or-later'
   summary: 'An R Wrapper for Bowtie2 and AdapterRemoval'
   description: 'This package provides an R wrapper of the popular bowtie2 sequencing reads aligner and AdapterRemoval, a convenient tool for rapid adapter trimming, identification, and read merging. The package contains wrapper functions that allow for genome indexing and alignment to those indexes. The package also allows for the creation of .bam files via Rsamtools.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
diff --git a/recipes/bioconductor-rbsurv/meta.yaml b/recipes/bioconductor-rbsurv/meta.yaml
index c4316931efc32..399aaa8374e09 100644
--- a/recipes/bioconductor-rbsurv/meta.yaml
+++ b/recipes/bioconductor-rbsurv/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.58.0" %}
+{% set version = "2.60.0" %}
 {% set name = "rbsurv" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 77140e1902a32fa5df323496a5cbc7fb
+  md5: e2791c7a40004e031fd88e0995f4dc13
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rbsurv", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-survival
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-survival
 test:
diff --git a/recipes/bioconductor-rbwa/build.sh b/recipes/bioconductor-rbwa/build.sh
index 9a888f987910c..578c85ee502d7 100644
--- a/recipes/bioconductor-rbwa/build.sh
+++ b/recipes/bioconductor-rbwa/build.sh
@@ -8,4 +8,4 @@ CXX=$CXX -I${PREFIX}/include -L${PREFIX}/lib
 CXX98=$CXX
 CXX11=$CXX
 CXX14=$CXX" > ~/.R/Makevars
-$R CMD INSTALL --build .
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-rbwa/meta.yaml b/recipes/bioconductor-rbwa/meta.yaml
index 374d5fce73c70..b777c8844fbd4 100644
--- a/recipes/bioconductor-rbwa/meta.yaml
+++ b/recipes/bioconductor-rbwa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "Rbwa" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fae3f23359b0d79625367cfb21ae2757
+  md5: 036e0acc237e1249e5509df62d6c9968
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rbwa", max_pin="x.x") }}'
 # Suggests: testthat, BiocStyle, knitr, rmarkdown
 # SystemRequirements: GNU make
 requirements:
@@ -40,4 +41,3 @@ about:
   summary: 'R wrapper for BWA-backtrack and BWA-MEM aligners'
   description: 'Provides an R wrapper for BWA alignment algorithms. Both BWA-backtrack and BWA-MEM are available. Convenience function to build a BWA index from a reference genome is also provided. Currently not supported for Windows machines.'
   license_file: LICENSE
-
diff --git a/recipes/bioconductor-rcas/meta.yaml b/recipes/bioconductor-rcas/meta.yaml
index 007c19da31eb7..bfcfb29ffe1ef 100644
--- a/recipes/bioconductor-rcas/meta.yaml
+++ b/recipes/bioconductor-rcas/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.2" %}
 {% set name = "RCAS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: af0a35923e6cd6eb176f8498cdf75951
+  md5: 379c5b756cc12ca37913f7b51d8d29eb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rcas", max_pin="x.x") }}'
   noarch: generic
-# Suggests: testthat, covr
+# Suggests: testthat, covr, BiocManager
 # SystemRequirements: pandoc (>= 1.12.3)
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomation >=1.32.0,<1.33.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomation >=1.34.0,<1.35.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cowplot
     - r-data.table
@@ -51,17 +52,17 @@ requirements:
     - r-rsqlite
     - 'pandoc >=1.12.3'
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomation >=1.32.0,<1.33.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomation >=1.34.0,<1.35.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cowplot
     - r-data.table
diff --git a/recipes/bioconductor-rcaspar/meta.yaml b/recipes/bioconductor-rcaspar/meta.yaml
index d6b239689a705..8d9c57743bd22 100644
--- a/recipes/bioconductor-rcaspar/meta.yaml
+++ b/recipes/bioconductor-rcaspar/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "RCASPAR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b3df5d1c22c9b55868fd054e5e07e516
+  md5: 54a7734c80b26a4b0080fbdeb583af02
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rcaspar", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-rcellminer/meta.yaml b/recipes/bioconductor-rcellminer/meta.yaml
index ee2ba8cad5219..9ae4c09d89d57 100644
--- a/recipes/bioconductor-rcellminer/meta.yaml
+++ b/recipes/bioconductor-rcellminer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.22.0" %}
+{% set version = "2.24.0" %}
 {% set name = "rcellminer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 0c97d997df69e2442dfddc352db63d6e
+  md5: e74fd74daff68802d805b6bc0336499d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rcellminer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, RColorBrewer, sqldf, BiocGenerics, testthat, BiocStyle, jsonlite, heatmaply, glmnet, foreach, doSNOW, parallel, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-rcellminerdata >=2.22.0,<2.23.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-rcellminerdata >=2.24.0,<2.25.0'
     - r-base
     - r-ggplot2
     - r-gplots
     - r-shiny
     - r-stringr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-rcellminerdata >=2.22.0,<2.23.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-rcellminerdata >=2.24.0,<2.25.0'
     - r-base
     - r-ggplot2
     - r-gplots
diff --git a/recipes/bioconductor-rcellminerdata/meta.yaml b/recipes/bioconductor-rcellminerdata/meta.yaml
index 45c41b13a4544..6d0d65c26be67 100644
--- a/recipes/bioconductor-rcellminerdata/meta.yaml
+++ b/recipes/bioconductor-rcellminerdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.22.0" %}
+{% set version = "2.24.0" %}
 {% set name = "rcellminerData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 45f581dfcac9cd66a5cb2ca6f0706d7a
+  md5: 2f45852d4eeb438b6a1feb156200b2bc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rcellminerdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, BiocStyle, rcellminer, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rcellminerdata/post-link.sh b/recipes/bioconductor-rcellminerdata/post-link.sh
index db2270d4a5fbd..c6a6cbff8fe34 100644
--- a/recipes/bioconductor-rcellminerdata/post-link.sh
+++ b/recipes/bioconductor-rcellminerdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rcellminerdata-2.22.0"
+installBiocDataPackage.sh "rcellminerdata-2.24.0"
diff --git a/recipes/bioconductor-rcgh/meta.yaml b/recipes/bioconductor-rcgh/meta.yaml
index c94462cecac67..add2e2dfda8d6 100644
--- a/recipes/bioconductor-rcgh/meta.yaml
+++ b/recipes/bioconductor-rcgh/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "rCGH" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 517f6a662b4aa90862de3f26c5b48e10
+  md5: 80510d5207fb0ad5d517a99b35734621
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rcgh", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, BiocGenerics, RUnit
 requirements:
   host:
-    - 'bioconductor-acgh >=1.78.0,<1.79.0'
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-acgh >=1.80.0,<1.81.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg18.knowngene >=3.2.0,<3.3.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.17.0,<3.18.0'
+    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.18.0,<3.19.0'
     - r-base
     - r-ggplot2
     - r-lattice
@@ -41,19 +42,19 @@ requirements:
     - r-plyr
     - 'r-shiny >=0.11.1'
   run:
-    - 'bioconductor-acgh >=1.78.0,<1.79.0'
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-acgh >=1.80.0,<1.81.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg18.knowngene >=3.2.0,<3.3.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.17.0,<3.18.0'
+    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.18.0,<3.19.0'
     - r-base
     - r-ggplot2
     - r-lattice
diff --git a/recipes/bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp/meta.yaml b/recipes/bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp/meta.yaml
index b4de3e01687bd..b884d5531ab95 100644
--- a/recipes/bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp/meta.yaml
+++ b/recipes/bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "RcisTarget.hg19.motifDBs.cisbpOnly.500bp" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 74b4a09e41b8af5f638848ca86f3ec53
+  md5: b8cdbfafeb9966332876fdf9be8dbb5a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -26,7 +27,7 @@ requirements:
     - r-base
     - r-data.table
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp/post-link.sh b/recipes/bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp/post-link.sh
index 07379bec0ec86..6674b4221ffd9 100644
--- a/recipes/bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp/post-link.sh
+++ b/recipes/bioconductor-rcistarget.hg19.motifdbs.cisbponly.500bp/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rcistarget.hg19.motifdbs.cisbponly.500bp-1.20.0"
+installBiocDataPackage.sh "rcistarget.hg19.motifdbs.cisbponly.500bp-1.22.0"
diff --git a/recipes/bioconductor-rcm/meta.yaml b/recipes/bioconductor-rcm/meta.yaml
index 0bcfbcce34ece..78a7ec4e17ce7 100644
--- a/recipes/bioconductor-rcm/meta.yaml
+++ b/recipes/bioconductor-rcm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "RCM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9be63e477e29d2fd363285ec9e89ea0b
+  md5: 2512426fe72a0dfede77816e98935ca1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rcm", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
     - r-alabama
     - r-base
     - r-dbi
@@ -35,8 +36,8 @@ requirements:
     - r-tseries
     - r-vgam
   run:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
     - r-alabama
     - r-base
     - r-dbi
diff --git a/recipes/bioconductor-rcollectl/meta.yaml b/recipes/bioconductor-rcollectl/meta.yaml
index 3d0b3933b0e20..da65e37613492 100644
--- a/recipes/bioconductor-rcollectl/meta.yaml
+++ b/recipes/bioconductor-rcollectl/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.1" %}
+{% set version = "1.2.0" %}
 {% set name = "Rcollectl" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f4eb21452f5d214449462f4a7d81b0b6
+  md5: 855c39cf9aece9c63b3febc0c0d5654b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rcollectl", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, knitcitations, sessioninfo, rmarkdown, testthat, covr
 # SystemRequirements: collectl
diff --git a/recipes/bioconductor-rcpi/meta.yaml b/recipes/bioconductor-rcpi/meta.yaml
index 2452d1d26bab5..5da588cf6c1df 100644
--- a/recipes/bioconductor-rcpi/meta.yaml
+++ b/recipes/bioconductor-rcpi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.1" %}
+{% set version = "1.38.0" %}
 {% set name = "Rcpi" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1837722429b7d18ab4594197a3aeb350
+  md5: 2f3697ca19200881f65d7d37f3d34e33
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rcpi", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-gosemsim >=2.26.0,<2.27.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-gosemsim >=2.28.0,<2.29.0'
     - r-base
     - r-doparallel
     - r-foreach
@@ -30,8 +31,8 @@ requirements:
     - r-rjson
     - r-rlang
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-gosemsim >=2.26.0,<2.27.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-gosemsim >=2.28.0,<2.29.0'
     - r-base
     - r-doparallel
     - r-foreach
diff --git a/recipes/bioconductor-rcwl/meta.yaml b/recipes/bioconductor-rcwl/meta.yaml
index 5d55d43dac0a0..fbd644f83afd4 100644
--- a/recipes/bioconductor-rcwl/meta.yaml
+++ b/recipes/bioconductor-rcwl/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "Rcwl" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 09262e7d3dc5c04ce919d8cebe9418a8
+  md5: f427ee3f7f5ba2458f8f97b694b48a85
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rcwl", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-batchtools
     - r-codetools
@@ -32,9 +33,9 @@ requirements:
     - r-shiny
     - r-yaml
   run:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-batchtools
     - r-codetools
diff --git a/recipes/bioconductor-rcwlpipelines/build_failure.linux-64.yaml b/recipes/bioconductor-rcwlpipelines/build_failure.linux-64.yaml
new file mode 100644
index 0000000000000..6ae0fde6d9352
--- /dev/null
+++ b/recipes/bioconductor-rcwlpipelines/build_failure.linux-64.yaml
@@ -0,0 +1,61 @@
+recipe_sha: af004261d70c636e2d08ed30d7cbe6563df507346a88a94d377d6a64ee5d934a  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+reason: |-
+  package r-base-4.3.0-h0fc540b_0 requires icu >=72.1,<73.0a0, but none of the providers can be installed
+category: |-
+  dependency issue
+log: |-
+  02:31:45 BIOCONDA INFO (OUT) RuntimeError: Solver could not find solution.Mamba failed to solve:
+  02:31:45 BIOCONDA INFO (OUT)  - r-base 4.3.*
+  02:31:45 BIOCONDA INFO (OUT)  - r-httr
+  02:31:45 BIOCONDA INFO (OUT)  - nodejs 14.*
+  02:31:45 BIOCONDA INFO (OUT)  - r-git2r
+  02:31:45 BIOCONDA INFO (OUT)  - bioconductor-s4vectors >=0.40.0,<0.41.0
+  02:31:45 BIOCONDA INFO (OUT)  - r-rappdirs
+  02:31:45 BIOCONDA INFO (OUT)  - bioconductor-rcwl >=1.18.0,<1.19.0
+  02:31:45 BIOCONDA INFO (OUT)  - bioconductor-biocfilecache >=2.10.0,<2.11.0
+  02:31:45 BIOCONDA INFO (OUT)
+  02:31:45 BIOCONDA INFO (OUT) with channels:
+  02:31:45 BIOCONDA INFO (OUT)  - file:///opt/host-conda-bld
+  02:31:45 BIOCONDA INFO (OUT)  - conda-forge
+  02:31:45 BIOCONDA INFO (OUT)  - bioconda
+  02:31:45 BIOCONDA INFO (OUT)  - defaults
+  02:31:45 BIOCONDA INFO (OUT)
+  02:31:45 BIOCONDA INFO (OUT) The reported errors are:
+  02:31:45 BIOCONDA INFO (OUT) - Encountered problems while solving:
+  02:31:45 BIOCONDA INFO (OUT) -   - package r-base-4.3.0-h0fc540b_0 requires icu >=72.1,<73.0a0, but none of the providers can be installed
+  02:31:45 BIOCONDA INFO (OUT) -
+  02:31:45 BIOCONDA INFO (OUT)
+  02:31:45 BIOCONDA INFO (OUT) During handling of the above exception, another exception occurred:
+  02:31:45 BIOCONDA INFO (OUT)
+  02:31:45 BIOCONDA INFO (OUT) Traceback (most recent call last):
+  02:31:45 BIOCONDA INFO (OUT)   File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
+  02:31:45 BIOCONDA INFO (OUT)     sys.exit(main())
+  02:31:45 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
+  02:31:45 BIOCONDA INFO (OUT)     call_conda_build(action, config)
+  02:31:45 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
+  02:31:45 BIOCONDA INFO (OUT)     result = api.build(
+  02:31:45 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
+  02:31:45 BIOCONDA INFO (OUT)     return build_tree(
+  02:31:45 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
+  02:31:45 BIOCONDA INFO (OUT)     packages_from_this = build(metadata, stats,
+  02:31:45 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2038, in build
+  02:31:45 BIOCONDA INFO (OUT)     output_metas = expand_outputs([(m, need_source_download, need_reparse_in_env)])
+  02:31:45 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 787, in expand_outputs
+  02:31:45 BIOCONDA INFO (OUT)     for (output_dict, m) in deepcopy(_m).get_output_metadata_set(permit_unsatisfiable_variants=False):
+  02:31:45 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/metadata.py", line 2524, in get_output_metadata_set
+  02:31:45 BIOCONDA INFO (OUT)     conda_packages = finalize_outputs_pass(
+  02:31:45 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/metadata.py", line 884, in finalize_outputs_pass
+  02:31:45 BIOCONDA INFO (OUT)     fm = finalize_metadata(
+  02:31:45 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 547, in finalize_metadata
+  02:31:45 BIOCONDA INFO (OUT)     build_unsat, host_unsat = add_upstream_pins(m,
+  02:31:45 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 409, in add_upstream_pins
+  02:31:45 BIOCONDA INFO (OUT)     host_deps, host_unsat, extra_run_specs_from_host = _read_upstream_pin_files(m, 'host',
+  02:31:45 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 374, in _read_upstream_pin_files
+  02:31:45 BIOCONDA INFO (OUT)     deps, actions, unsat = get_env_dependencies(m, env, m.config.variant,
+  02:31:45 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 131, in get_env_dependencies
+  02:31:45 BIOCONDA INFO (OUT)     actions = environ.get_install_actions(tmpdir, tuple(dependencies), env,
+  02:31:45 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 150, in mamba_get_install_actions
+  02:31:45 BIOCONDA INFO (OUT)     raise err
+  02:31:45 BIOCONDA INFO (OUT) conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("r-base==4.3.0=h0fc540b_0"), MatchSpec("icu[version='>=72.1,<73.0a0']")}
+
diff --git a/recipes/bioconductor-rcwlpipelines/meta.yaml b/recipes/bioconductor-rcwlpipelines/meta.yaml
index daa823b3014ed..f933217359628 100644
--- a/recipes/bioconductor-rcwlpipelines/meta.yaml
+++ b/recipes/bioconductor-rcwlpipelines/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "RcwlPipelines" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8c4531dad2b967b01fc7520ec5ad5e5d
+  md5: 5ff1c2848694b09cc639a56009392cf3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rcwlpipelines", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, BiocStyle
 # SystemRequirements: nodejs
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-rcwl >=1.16.0,<1.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-rcwl >=1.18.0,<1.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-git2r
     - r-httr
     - r-rappdirs
-    - nodejs >=18
+    - nodejs
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-rcwl >=1.16.0,<1.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-rcwl >=1.18.0,<1.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-git2r
     - r-httr
     - r-rappdirs
-    - nodejs >=18
+    - nodejs
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rcx/meta.yaml b/recipes/bioconductor-rcx/meta.yaml
index 50e3dbc1a19f1..63f9f80394e5d 100644
--- a/recipes/bioconductor-rcx/meta.yaml
+++ b/recipes/bioconductor-rcx/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "RCX" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 04d1a91c0621fd0704b6653244ebc5e9
+  md5: 4fdd9c350200e6854c3ed1db44572826
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rcx", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, testthat, knitr, rmarkdown, base64enc, graph
 requirements:
diff --git a/recipes/bioconductor-rcy3/meta.yaml b/recipes/bioconductor-rcy3/meta.yaml
index ba7877a398d7a..e0c575aaae226 100644
--- a/recipes/bioconductor-rcy3/meta.yaml
+++ b/recipes/bioconductor-rcy3/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.20.0" %}
+{% set version = "2.22.1" %}
 {% set name = "RCy3" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7a92632aee8b33ce6fb02007d5185e9d
+  md5: d4f51eaf382ede111f69aefd2660e383
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rcy3", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, igraph, grDevices
 # SystemRequirements: Cytoscape (>= 3.7.1), CyREST (>= 3.8.0)
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-base64enc
     - r-base64url
@@ -36,13 +37,13 @@ requirements:
     - r-rcolorbrewer
     - r-rcurl
     - r-rjsonio
-    - r-uchardet
+    - r-stringi
     - r-uuid
     - r-xml
     - 'cytoscape >=3.7.1'
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-base64enc
     - r-base64url
@@ -55,7 +56,7 @@ requirements:
     - r-rcolorbrewer
     - r-rcurl
     - r-rjsonio
-    - r-uchardet
+    - r-stringi
     - r-uuid
     - r-xml
     - 'cytoscape >=3.7.1'
diff --git a/recipes/bioconductor-rcyjs/meta.yaml b/recipes/bioconductor-rcyjs/meta.yaml
index f6398c9c572c1..d1b93b6a7c224 100644
--- a/recipes/bioconductor-rcyjs/meta.yaml
+++ b/recipes/bioconductor-rcyjs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.22.0" %}
+{% set version = "2.24.0" %}
 {% set name = "RCyjs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 17cff1b9dd82ea88c53dab0026483a8b
+  md5: b02526ea0ff36d61fdac395633bc4a4d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rcyjs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-browserviz >=2.22.0,<2.23.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-browserviz >=2.24.0,<2.25.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-base64enc
     - 'r-httpuv >=1.5.0'
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-browserviz >=2.22.0,<2.23.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-browserviz >=2.24.0,<2.25.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-base64enc
     - 'r-httpuv >=1.5.0'
diff --git a/recipes/bioconductor-rdgidb/meta.yaml b/recipes/bioconductor-rdgidb/meta.yaml
index 8a80f191c2fba..60e0aeffac71e 100644
--- a/recipes/bioconductor-rdgidb/meta.yaml
+++ b/recipes/bioconductor-rdgidb/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "rDGIdb" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2c908760f3b9a2722fc61aa3e3f02085
+  md5: 5f3f78a4035bbb5597811f38c68b8e4f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rdgidb", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle,knitr,testthat
 requirements:
diff --git a/recipes/bioconductor-rdisop/meta.yaml b/recipes/bioconductor-rdisop/meta.yaml
index b513069f63ddb..a2c7a9d73dcd3 100644
--- a/recipes/bioconductor-rdisop/meta.yaml
+++ b/recipes/bioconductor-rdisop/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.60.0" %}
+{% set version = "1.62.0" %}
 {% set name = "Rdisop" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 601cefd4030ddf03d7160eafbd882d58
+  md5: 508c96aaea70daa872ec75712570f6da
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rdisop", max_pin="x.x") }}'
 # Suggests: RUnit
 # SystemRequirements: None
 requirements:
diff --git a/recipes/bioconductor-rdrtoolbox/meta.yaml b/recipes/bioconductor-rdrtoolbox/meta.yaml
index 985fed010963b..8cf36b1c8d51c 100644
--- a/recipes/bioconductor-rdrtoolbox/meta.yaml
+++ b/recipes/bioconductor-rdrtoolbox/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.50.0" %}
+{% set version = "1.52.0" %}
 {% set name = "RDRToolbox" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fa5250922a670612beb7076f719c5eec
+  md5: 4b0e59a1ea48dd51e11d8d18666cf2d4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rdrtoolbox", max_pin="x.x") }}'
   noarch: generic
 # Suggests: golubEsets
 requirements:
diff --git a/recipes/bioconductor-reactome.db/meta.yaml b/recipes/bioconductor-reactome.db/meta.yaml
index 298a51b995f7e..242822e8bae25 100644
--- a/recipes/bioconductor-reactome.db/meta.yaml
+++ b/recipes/bioconductor-reactome.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.84.0" %}
+{% set version = "1.86.2" %}
 {% set name = "reactome.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: ce62dbac370a30e260d8e45891939693
+  md5: ff56f3908b347cb18e3e4ccedf7f584e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-reactome.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RSQLite
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
@@ -35,7 +36,7 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/html/{{ name }}.html'
   license: 'CC BY 4.0'
   summary: 'A set of annotation maps for reactome'
-  description: 'A set of annotation maps for reactome assembled using data from reactome'
+  description: 'A set of annotation maps for reactome assembled using data from reactome. This package has been created by a third-party developer, and is not affiliated with the Reactome team.'
 extra:
   parent_recipe:
     name: bioconductor-reactome.db
diff --git a/recipes/bioconductor-reactome.db/post-link.sh b/recipes/bioconductor-reactome.db/post-link.sh
index 876c20ee8f1c5..505cfbf3b984f 100644
--- a/recipes/bioconductor-reactome.db/post-link.sh
+++ b/recipes/bioconductor-reactome.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "reactome.db-1.84.0"
+installBiocDataPackage.sh "reactome.db-1.86.2"
diff --git a/recipes/bioconductor-reactomecontentservice4r/meta.yaml b/recipes/bioconductor-reactomecontentservice4r/meta.yaml
index 79c1cafcbf884..6e385b59f6091 100644
--- a/recipes/bioconductor-reactomecontentservice4r/meta.yaml
+++ b/recipes/bioconductor-reactomecontentservice4r/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "ReactomeContentService4R" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 50dd55d0d0765fb797dac403502775cf
+  md5: 3ec9de10a86259a6aae5308f6dfc0fa4
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-reactomecontentservice4r", max_pin="x.x") }}'
   noarch: generic
 # Suggests: pdftools, testthat, knitr, rmarkdown
 requirements:
diff --git a/recipes/bioconductor-reactomegraph4r/meta.yaml b/recipes/bioconductor-reactomegraph4r/meta.yaml
index 082f8e215f520..3ae2c6b087f58 100644
--- a/recipes/bioconductor-reactomegraph4r/meta.yaml
+++ b/recipes/bioconductor-reactomegraph4r/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "ReactomeGraph4R" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4501886646fb5b54869a77a3456db1a5
+  md5: 47a818d1c6d25db90a547d315d1189e8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-reactomegraph4r", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, stringr, networkD3, visNetwork, wesanderson
 requirements:
   host:
-    - 'bioconductor-reactomecontentservice4r >=1.8.0,<1.9.0'
+    - 'bioconductor-reactomecontentservice4r >=1.10.0,<1.11.0'
     - r-base
     - r-data.table
     - r-doparallel
@@ -33,7 +34,7 @@ requirements:
     - r-purrr
     - r-rlang
   run:
-    - 'bioconductor-reactomecontentservice4r >=1.8.0,<1.9.0'
+    - 'bioconductor-reactomecontentservice4r >=1.10.0,<1.11.0'
     - r-base
     - r-data.table
     - r-doparallel
diff --git a/recipes/bioconductor-reactomegsa.data/meta.yaml b/recipes/bioconductor-reactomegsa.data/meta.yaml
index 33d4444292b5a..bec7f216b21da 100644
--- a/recipes/bioconductor-reactomegsa.data/meta.yaml
+++ b/recipes/bioconductor-reactomegsa.data/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.1" %}
 {% set name = "ReactomeGSA.data" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1c6b8b4eeacfc2f316c8c0aa021938f1
+  md5: bd236d4d4078f99ea5d473fde1ff065f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-reactomegsa.data", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-reactomegsa >=1.14.0,<1.15.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-reactomegsa >=1.16.0,<1.17.0'
     - r-base
     - r-seurat
   run:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-reactomegsa >=1.14.0,<1.15.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-reactomegsa >=1.16.0,<1.17.0'
     - r-base
     - r-seurat
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-reactomegsa.data/post-link.sh b/recipes/bioconductor-reactomegsa.data/post-link.sh
index 8712bc92d4982..7105dd31e819c 100644
--- a/recipes/bioconductor-reactomegsa.data/post-link.sh
+++ b/recipes/bioconductor-reactomegsa.data/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "reactomegsa.data-1.14.0"
+installBiocDataPackage.sh "reactomegsa.data-1.16.1"
diff --git a/recipes/bioconductor-reactomegsa/meta.yaml b/recipes/bioconductor-reactomegsa/meta.yaml
index 3e7ec0c8fb08d..eca696e84304c 100644
--- a/recipes/bioconductor-reactomegsa/meta.yaml
+++ b/recipes/bioconductor-reactomegsa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.1" %}
 {% set name = "ReactomeGSA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ceb80478cd55d9675e6d0a6093023cab
+  md5: c4ef9b68baf6957b7a3abf38bd4ffb39
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-reactomegsa", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, ReactomeGSA.data, Biobase, devtools
 requirements:
diff --git a/recipes/bioconductor-reactomepa/meta.yaml b/recipes/bioconductor-reactomepa/meta.yaml
index 22181302d424b..7157cb19579aa 100644
--- a/recipes/bioconductor-reactomepa/meta.yaml
+++ b/recipes/bioconductor-reactomepa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.44.0" %}
+{% set version = "1.46.0" %}
 {% set name = "ReactomePA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,32 +11,33 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4f827baf24cebacfc6d5960d8639ada5
+  md5: c31f563d1848fd0bafdbedb6b7f9bb66
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-reactomepa", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, clusterProfiler, knitr, rmarkdown, org.Hs.eg.db, prettydoc, testthat
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-enrichplot >=1.20.0,<1.21.0'
-    - 'bioconductor-graphite >=1.46.0,<1.47.0'
-    - 'bioconductor-reactome.db >=1.84.0,<1.85.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-enrichplot >=1.22.0,<1.23.0'
+    - 'bioconductor-graphite >=1.48.0,<1.49.0'
+    - 'bioconductor-reactome.db >=1.86.0,<1.87.0'
     - r-base
     - 'r-ggplot2 >=3.3.5'
     - r-ggraph
     - r-gson
     - r-igraph
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-enrichplot >=1.20.0,<1.21.0'
-    - 'bioconductor-graphite >=1.46.0,<1.47.0'
-    - 'bioconductor-reactome.db >=1.84.0,<1.85.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-enrichplot >=1.22.0,<1.23.0'
+    - 'bioconductor-graphite >=1.48.0,<1.49.0'
+    - 'bioconductor-reactome.db >=1.86.0,<1.87.0'
     - r-base
     - 'r-ggplot2 >=3.3.5'
     - r-ggraph
diff --git a/recipes/bioconductor-readqpcr/meta.yaml b/recipes/bioconductor-readqpcr/meta.yaml
index 90b685245eff9..999355ab15670 100644
--- a/recipes/bioconductor-readqpcr/meta.yaml
+++ b/recipes/bioconductor-readqpcr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "ReadqPCR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c8b34a2498b00f76095ad92c8ccc11eb
+  md5: b92a0fe88b39abffbc0c46c36a76a8de
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-readqpcr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: qpcR
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-rebet/meta.yaml b/recipes/bioconductor-rebet/meta.yaml
index ab5de905c1863..8771d5bd544a0 100644
--- a/recipes/bioconductor-rebet/meta.yaml
+++ b/recipes/bioconductor-rebet/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "REBET" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d7dc401e0d069b5ab67336904d617402
+  md5: fc1e4bc02e112473630da74fce831189
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rebet", max_pin="x.x") }}'
 # Suggests: RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-asset >=2.18.0,<2.19.0'
+    - 'bioconductor-asset >=2.20.0,<2.21.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-asset >=2.18.0,<2.19.0'
+    - 'bioconductor-asset >=2.20.0,<2.21.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-rebook/meta.yaml b/recipes/bioconductor-rebook/meta.yaml
index 189c783a94af4..8ea103b7b63c5 100644
--- a/recipes/bioconductor-rebook/meta.yaml
+++ b/recipes/bioconductor-rebook/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.1" %}
+{% set version = "1.12.0" %}
 {% set name = "rebook" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: b71e3b95cce07920b7ce27a330f581ff
+  md5: 05a8502e7f25563382e9e277b3199339
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rebook", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, igraph, XML, BiocManager, RCurl, bookdown, rappdirs, yaml, BiocParallel, OSCA.intro, OSCA.workflows
 requirements:
   host:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-dir.expiry >=1.8.0,<1.9.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-dir.expiry >=1.10.0,<1.11.0'
     - r-base
     - r-codedepends
     - r-filelock
     - 'r-knitr >=1.32'
     - r-rmarkdown
   run:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-dir.expiry >=1.8.0,<1.9.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-dir.expiry >=1.10.0,<1.11.0'
     - r-base
     - r-codedepends
     - r-filelock
diff --git a/recipes/bioconductor-receptloss/meta.yaml b/recipes/bioconductor-receptloss/meta.yaml
index 55a5cd3f1fc37..1dd994f66fc91 100644
--- a/recipes/bioconductor-receptloss/meta.yaml
+++ b/recipes/bioconductor-receptloss/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "receptLoss" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 45eb200329852f199e2ccd81408799c5
+  md5: 3ccddd0181e8b78b843807d1378f86ef
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-receptloss", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat (>= 2.1.0), here
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
     - r-magrittr
     - r-tidyr
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-reconsi/meta.yaml b/recipes/bioconductor-reconsi/meta.yaml
index c85ae3b34f3a1..7157b2fd15860 100644
--- a/recipes/bioconductor-reconsi/meta.yaml
+++ b/recipes/bioconductor-reconsi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "reconsi" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: bf6ff0103385ff01c60c0a0267fc24c1
+  md5: 884019da85885289094a2aed95d18314
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-reconsi", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
     - r-base
     - r-ggplot2
     - r-ks
@@ -29,7 +30,7 @@ requirements:
     - r-matrixstats
     - r-reshape2
   run:
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
     - r-base
     - r-ggplot2
     - r-ks
diff --git a/recipes/bioconductor-recount/meta.yaml b/recipes/bioconductor-recount/meta.yaml
index 020e059f3a9ae..d016fb257b38b 100644
--- a/recipes/bioconductor-recount/meta.yaml
+++ b/recipes/bioconductor-recount/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "recount" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,39 +11,40 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 7dd19c0ea4ada1a5389c83cd7ad24641
+  md5: 80d2f08ec7c30f139b1967db7cd07f7c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-recount", max_pin="x.x") }}'
   noarch: generic
 # Suggests: AnnotationDbi, BiocManager, BiocStyle (>= 2.5.19), DESeq2, sessioninfo, EnsDb.Hsapiens.v79, GenomicFeatures, knitr (>= 1.6), org.Hs.eg.db, RefManageR, regionReport (>= 1.9.4), rmarkdown (>= 0.9.5), testthat (>= 2.1.0), covr, pheatmap, DT, edgeR, ggplot2, RColorBrewer
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-derfinder >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-derfinder >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-downloader
     - r-rcurl
     - r-rentrez
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-derfinder >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-derfinder >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-downloader
     - r-rcurl
diff --git a/recipes/bioconductor-recount3/meta.yaml b/recipes/bioconductor-recount3/meta.yaml
index f8614bbd6239a..4acc5addbf239 100644
--- a/recipes/bioconductor-recount3/meta.yaml
+++ b/recipes/bioconductor-recount3/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.2" %}
+{% set version = "1.12.0" %}
 {% set name = "recount3" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: e914f149ed1771b7e03d34b66d9379c7
+  md5: 0e3b0229faa614fbbc49547e44b342d7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-recount3", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, covr, knitcitations, knitr, RefManageR, rmarkdown, testthat, pryr, interactiveDisplayBase, recount
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-httr
@@ -33,11 +34,11 @@ requirements:
     - r-r.utils
     - r-sessioninfo
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-httr
diff --git a/recipes/bioconductor-recountmethylation/meta.yaml b/recipes/bioconductor-recountmethylation/meta.yaml
index 190a95ddd4d17..8270e20eb93ab 100644
--- a/recipes/bioconductor-recountmethylation/meta.yaml
+++ b/recipes/bioconductor-recountmethylation/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "recountmethylation" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 7d8ce3ec6caee2a883704ba14921a753
+  md5: 56d6b1dcb581c96c3ee93c4def178a1c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-recountmethylation", max_pin="x.x") }}'
   noarch: generic
-# Suggests: minfiData, knitr, testthat, ggplot2, gridExtra, rmarkdown, BiocStyle, GenomicRanges, limma, ExperimentHub, AnnotationHub
+# Suggests: minfiData, minfiDataEPIC, knitr, testthat, ggplot2, gridExtra, rmarkdown, BiocStyle, GenomicRanges, limma, ExperimentHub, AnnotationHub
 requirements:
   host:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-r.utils
     - r-rcurl
     - r-reticulate
   run:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-r.utils
     - r-rcurl
diff --git a/recipes/bioconductor-recoup/meta.yaml b/recipes/bioconductor-recoup/meta.yaml
index 7afbda57cf0b1..3d9060186612c 100644
--- a/recipes/bioconductor-recoup/meta.yaml
+++ b/recipes/bioconductor-recoup/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "recoup" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 43f3f62872c4b637d75c9ebeb37831b9
+  md5: 021e00a6ca090381be16bf88e12eef05
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-recoup", max_pin="x.x") }}'
   noarch: generic
 # Suggests: grid, BiocStyle, knitr, rmarkdown, zoo, RUnit, BiocManager, BSgenome, RMySQL
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-circlize
     - r-ggplot2
@@ -40,18 +41,18 @@ requirements:
     - r-rsqlite
     - r-stringr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-circlize
     - r-ggplot2
diff --git a/recipes/bioconductor-reder/meta.yaml b/recipes/bioconductor-reder/meta.yaml
index 6b1d9b412d1a2..f41f96e824ee1 100644
--- a/recipes/bioconductor-reder/meta.yaml
+++ b/recipes/bioconductor-reder/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.4.1" %}
+{% set version = "2.6.0" %}
 {% set name = "RedeR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 456d8535d228fd0767c9bcae10dea8c5
+  md5: 033b5763d95dc222256a4ef85b7e3a99
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-reder", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, markdown, TreeAndLeaf
 # SystemRequirements: Java Runtime Environment (Java>= 11)
diff --git a/recipes/bioconductor-redisparam/meta.yaml b/recipes/bioconductor-redisparam/meta.yaml
index e27ff9b17ddc6..1ae122c83be0f 100644
--- a/recipes/bioconductor-redisparam/meta.yaml
+++ b/recipes/bioconductor-redisparam/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "RedisParam" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5149581ff1eb737d62129ff61417385c
+  md5: cf24018f96bc9de6286d2806dfd7bfaa
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-redisparam", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, knitr, testthat, BiocStyle
 # SystemRequirements: hiredis
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-futile.logger
     - r-redux
     - r-withr
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-futile.logger
     - r-redux
diff --git a/recipes/bioconductor-redseq/meta.yaml b/recipes/bioconductor-redseq/meta.yaml
index aeb8f861a45bb..452649f180224 100644
--- a/recipes/bioconductor-redseq/meta.yaml
+++ b/recipes/bioconductor-redseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "REDseq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e9534df4cbe43b5e8681406ff2b3e163
+  md5: f20e437ad9c48683bdaeda1825f87f85
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-redseq", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.celegans.ucsc.ce2 >=1.4.0,<1.5.0'
-    - 'bioconductor-chippeakanno >=3.34.0,<3.35.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-chippeakanno >=3.36.0,<3.37.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.celegans.ucsc.ce2 >=1.4.0,<1.5.0'
-    - 'bioconductor-chippeakanno >=3.34.0,<3.35.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-chippeakanno >=3.36.0,<3.37.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-regionalpcs/build.sh b/recipes/bioconductor-regionalpcs/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-regionalpcs/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-regionalpcs/meta.yaml b/recipes/bioconductor-regionalpcs/meta.yaml
new file mode 100644
index 0000000000000..dfc7d8dcc70b5
--- /dev/null
+++ b/recipes/bioconductor-regionalpcs/meta.yaml
@@ -0,0 +1,45 @@
+{% set version = "1.0.0" %}
+{% set name = "regionalpcs" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
+  md5: 37f0fc1370efacc719f72b419455096a
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-regionalpcs", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: knitr, rmarkdown, RMTstat, testthat (>= 3.0.0), BiocStyle, tidyr, minfiData, TxDb.Hsapiens.UCSC.hg19.knownGene, IRanges
+requirements:
+  host:
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-pcatools >=2.14.0,<2.15.0'
+    - r-base
+    - r-dplyr
+    - r-tibble
+  run:
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-pcatools >=2.14.0,<2.15.0'
+    - r-base
+    - r-dplyr
+    - r-tibble
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'MIT + file LICENSE'
+  summary: 'Summarizing Regional Methylation with Regional Principal Components Analysis'
+  description: 'Functions to summarize DNA methylation data using regional principal components. Regional principal components are computed using principal components analysis within genomic regions to summarize the variability in methylation levels across CpGs. The number of principal components is chosen using either the Marcenko-Pasteur or Gavish-Donoho method to identify relevant signal in the data.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-regionalst/build.sh b/recipes/bioconductor-regionalst/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-regionalst/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-regionalst/meta.yaml b/recipes/bioconductor-regionalst/meta.yaml
new file mode 100644
index 0000000000000..014618ed68bf1
--- /dev/null
+++ b/recipes/bioconductor-regionalst/meta.yaml
@@ -0,0 +1,71 @@
+{% set version = "1.0.1" %}
+{% set name = "RegionalST" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: d9589bef7f1408c77dee510baa14b4ad
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-regionalst", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, knitr, rmarkdown, gplots, testthat (>= 3.0.0)
+requirements:
+  host:
+    - 'bioconductor-bayesspace >=1.12.0,<1.13.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-toast >=1.16.0,<1.17.0'
+    - r-assertthat
+    - r-base
+    - r-colorspace
+    - r-dplyr
+    - r-ggplot2
+    - r-gridextra
+    - r-magrittr
+    - r-rcolorbrewer
+    - r-seurat
+    - r-shiny
+    - r-tibble
+  run:
+    - 'bioconductor-bayesspace >=1.12.0,<1.13.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-toast >=1.16.0,<1.17.0'
+    - r-assertthat
+    - r-base
+    - r-colorspace
+    - r-dplyr
+    - r-ggplot2
+    - r-gridextra
+    - r-magrittr
+    - r-rcolorbrewer
+    - r-seurat
+    - r-shiny
+    - r-tibble
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'Investigating regions of interest and performing cross-regional analysis with spatial transcriptomics data'
+  description: 'This package analyze spatial transcriptomics data through cross-regional analysis. It selects regions of interest (ROIs) and identifys cross-regional cell type-specific differential signals. The ROIs can be selected using automatic algorithm or through manual selection. It facilitates manual selection of ROIs using a shiny application.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-regioner/meta.yaml b/recipes/bioconductor-regioner/meta.yaml
index 266bf8254d054..0b0d546a5ab73 100644
--- a/recipes/bioconductor-regioner/meta.yaml
+++ b/recipes/bioconductor-regioner/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "regioneR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1f7f3f5515755c14cc156c8c3b1e0789
+  md5: c2a9b6e46aa1aded948991c482cbf8a1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-regioner", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19.masked, testthat
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-memoise
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-memoise
 test:
diff --git a/recipes/bioconductor-regionereloaded/meta.yaml b/recipes/bioconductor-regionereloaded/meta.yaml
index c4e42ad969a11..c7131511ca7c5 100644
--- a/recipes/bioconductor-regionereloaded/meta.yaml
+++ b/recipes/bioconductor-regionereloaded/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "regioneReloaded" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a2357349974289f47a26a0d3c30dabb5
+  md5: 38175e4bcc9ccb951f79fca8238897b2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-regionereloaded", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, BiocStyle, GenomeInfoDb, knitr, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-regioner >=1.32.0,<1.33.0'
+    - 'bioconductor-regioner >=1.34.0,<1.35.0'
     - r-base
     - r-cluster
     - r-ggplot2
@@ -32,7 +33,7 @@ requirements:
     - r-scales
     - r-umap
   run:
-    - 'bioconductor-regioner >=1.32.0,<1.33.0'
+    - 'bioconductor-regioner >=1.34.0,<1.35.0'
     - r-base
     - r-cluster
     - r-ggplot2
diff --git a/recipes/bioconductor-regionreport/meta.yaml b/recipes/bioconductor-regionreport/meta.yaml
index 2a041519f0dd4..2b14e31961044 100644
--- a/recipes/bioconductor-regionreport/meta.yaml
+++ b/recipes/bioconductor-regionreport/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "regionReport" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,38 +11,39 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3bbf529af46b5340193184f866cb4721
+  md5: 8ec5fb1e7db2235d543b2a9a6660a3b3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-regionreport", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocManager, biovizBase, bumphunter (>= 1.7.6), derfinderPlot (>= 1.29.1), sessioninfo, DT, edgeR, ggbio (>= 1.35.2), ggplot2, grid, gridExtra, IRanges, mgcv, pasilla, pheatmap, RColorBrewer, TxDb.Hsapiens.UCSC.hg19.knownGene, whisker
 requirements:
   host:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-deformats >=1.28.0,<1.29.0'
-    - 'bioconductor-derfinder >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-deformats >=1.30.0,<1.31.0'
+    - 'bioconductor-derfinder >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-knitr >=1.6'
     - 'r-knitrbootstrap >=0.9.0'
     - r-refmanager
     - 'r-rmarkdown >=0.9.5'
   run:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-deformats >=1.28.0,<1.29.0'
-    - 'bioconductor-derfinder >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-deformats >=1.30.0,<1.31.0'
+    - 'bioconductor-derfinder >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-knitr >=1.6'
     - 'r-knitrbootstrap >=0.9.0'
diff --git a/recipes/bioconductor-regparallel/meta.yaml b/recipes/bioconductor-regparallel/meta.yaml
index 64ec9f3fe8745..c057ce329d0b4 100644
--- a/recipes/bioconductor-regparallel/meta.yaml
+++ b/recipes/bioconductor-regparallel/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "RegParallel" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ac6ed5e19a8dcfe359e97ccf89949dd1
+  md5: 68533561edc82ac22088ffdd6e988aad
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-regparallel", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, knitr, DESeq2, airway, magrittr, Biobase, GEOquery, biomaRt, survminer, survey, rmarkdown
 requirements:
@@ -39,7 +40,7 @@ requirements:
     - r-stringr
     - r-survival
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-regparallel/post-link.sh b/recipes/bioconductor-regparallel/post-link.sh
index 647e5431ffe5e..72bade8afac71 100644
--- a/recipes/bioconductor-regparallel/post-link.sh
+++ b/recipes/bioconductor-regparallel/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "regparallel-1.18.0"
+installBiocDataPackage.sh "regparallel-1.20.0"
diff --git a/recipes/bioconductor-regsplice/meta.yaml b/recipes/bioconductor-regsplice/meta.yaml
index 5b0e0e6806a81..4c0ad8ce56a86 100644
--- a/recipes/bioconductor-regsplice/meta.yaml
+++ b/recipes/bioconductor-regsplice/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "regsplice" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 710fabf735b71d3a00303d4e53d57ce0
+  md5: 3f63d2e93b02aec3ed044e2c56938d12
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-regsplice", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-glmnet
     - r-pbapply
   run:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-glmnet
     - r-pbapply
diff --git a/recipes/bioconductor-regutools/meta.yaml b/recipes/bioconductor-regutools/meta.yaml
index a341f9c3a2139..84af8fe9dc688 100644
--- a/recipes/bioconductor-regutools/meta.yaml
+++ b/recipes/bioconductor-regutools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "regutools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,38 +11,39 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 0f21e48a748b216be4eb31d3d6646185
+  md5: f8b22dfa98af4304de7be1654159626a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-regutools", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 2.1.0), covr
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rcy3 >=2.20.0,<2.21.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rcy3 >=2.22.0,<2.23.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dbi
     - r-rsqlite
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rcy3 >=2.20.0,<2.21.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rcy3 >=2.22.0,<2.23.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dbi
     - r-rsqlite
diff --git a/recipes/bioconductor-remp/meta.yaml b/recipes/bioconductor-remp/meta.yaml
index 527302ae3737b..d8706ceaf727c 100644
--- a/recipes/bioconductor-remp/meta.yaml
+++ b/recipes/bioconductor-remp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "REMP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f922355791b56e6db96c5fc289f60e76
+  md5: ee8e5abfbef5fc5798de790cacbe2cfe
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-remp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: IlluminaHumanMethylation450kanno.ilmn12.hg19, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg38, knitr, rmarkdown, minfiDataEPIC
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-caret
     - r-doparallel
@@ -45,20 +46,20 @@ requirements:
     - r-readr
     - r-settings
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-caret
     - r-doparallel
diff --git a/recipes/bioconductor-repitools/meta.yaml b/recipes/bioconductor-repitools/meta.yaml
index 90256ba30f818..c78c6b1bf1018 100644
--- a/recipes/bioconductor-repitools/meta.yaml
+++ b/recipes/bioconductor-repitools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "Repitools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 614a2e515290ab172e482b38aefcf07c
+  md5: 3388cac60efdea157e1975abc5dcccd2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-repitools", max_pin="x.x") }}'
 # Suggests: ShortRead, BSgenome.Hsapiens.UCSC.hg18
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-ringo >=1.64.0,<1.65.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-ringo >=1.66.0,<1.67.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cluster
     - r-gplots
@@ -42,19 +43,19 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-ringo >=1.64.0,<1.65.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-ringo >=1.66.0,<1.67.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cluster
     - r-gplots
diff --git a/recipes/bioconductor-reportingtools/meta.yaml b/recipes/bioconductor-reportingtools/meta.yaml
index cd3ada7e1ae4b..c00a0944d468c 100644
--- a/recipes/bioconductor-reportingtools/meta.yaml
+++ b/recipes/bioconductor-reportingtools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.39.0" %}
+{% set version = "2.42.2" %}
 {% set name = "ReportingTools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9d17684737cbd651051b60339872967f
+  md5: 5f5adbf6b8570e232b9f3e98f75eab59
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-reportingtools", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, ALL, hgu95av2.db, org.Mm.eg.db, shiny, pasilla, org.Sc.sgd.db, rmarkdown, markdown
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-category >=2.66.0,<2.67.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-pfam.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-category >=2.68.0,<2.69.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-pfam.db >=3.18.0,<3.19.0'
     - r-base
     - r-ggplot2
     - r-hwriter
@@ -42,19 +43,19 @@ requirements:
     - r-r.utils
     - r-xml
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-category >=2.66.0,<2.67.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-pfam.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-category >=2.68.0,<2.69.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-pfam.db >=3.18.0,<3.19.0'
     - r-base
     - r-ggplot2
     - r-hwriter
diff --git a/recipes/bioconductor-repviz/meta.yaml b/recipes/bioconductor-repviz/meta.yaml
index 284380aa6d46a..eb6ecad3257e6 100644
--- a/recipes/bioconductor-repviz/meta.yaml
+++ b/recipes/bioconductor-repviz/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "RepViz" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 299815c83d5eeba7e716951e52b4f767
+  md5: a740655d18448d4fb24e37ff1c60820d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-repviz", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, knitr, testthat
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-reqon/meta.yaml b/recipes/bioconductor-reqon/meta.yaml
index 0c703203847d4..b0abd687e3d96 100644
--- a/recipes/bioconductor-reqon/meta.yaml
+++ b/recipes/bioconductor-reqon/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "ReQON" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: aa89144c5794fee3c455972783956d63
+  md5: 3940db44a4b48a5b04d87c9466df72c3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-reqon", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle
 # SystemRequirements: Java version >= 1.6
 requirements:
   host:
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-seqbias >=1.48.0,<1.49.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-seqbias >=1.50.0,<1.51.0'
     - r-base
     - r-rjava
     - openjdk
   run:
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-seqbias >=1.48.0,<1.49.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-seqbias >=1.50.0,<1.51.0'
     - r-base
     - r-rjava
     - openjdk
diff --git a/recipes/bioconductor-residualmatrix/meta.yaml b/recipes/bioconductor-residualmatrix/meta.yaml
index 9dd8341117bf8..aa7ea294a226e 100644
--- a/recipes/bioconductor-residualmatrix/meta.yaml
+++ b/recipes/bioconductor-residualmatrix/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "ResidualMatrix" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7d4291731f44ec7111ac14306ce53f18
+  md5: 76eaee4311380f83265d9b5ecacd7e49
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-residualmatrix", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle, knitr, rmarkdown, BiocSingular
 requirements:
   host:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-matrix
   run:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-matrix
 test:
diff --git a/recipes/bioconductor-resolve/meta.yaml b/recipes/bioconductor-resolve/meta.yaml
index 353621ed4826b..3f516a9501e1f 100644
--- a/recipes/bioconductor-resolve/meta.yaml
+++ b/recipes/bioconductor-resolve/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "RESOLVE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 090d75906aa025a56311fe6092ad8356
+  md5: 3dd3a656ed19f5faa759f4b37c459f53
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-resolve", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, BiocStyle, testthat, knitr
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.1000genomes.hs37d5 >=0.99.0,<0.100.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-mutationalpatterns >=3.10.0,<3.11.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-mutationalpatterns >=3.12.0,<3.13.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-ggplot2
@@ -38,14 +39,14 @@ requirements:
     - r-nnls
     - r-reshape2
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.1000genomes.hs37d5 >=0.99.0,<0.100.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-mutationalpatterns >=3.10.0,<3.11.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-mutationalpatterns >=3.12.0,<3.13.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-ggplot2
diff --git a/recipes/bioconductor-restfulse/meta.yaml b/recipes/bioconductor-restfulse/meta.yaml
index 7ce223f2c7b79..952a18777ff3c 100644
--- a/recipes/bioconductor-restfulse/meta.yaml
+++ b/recipes/bioconductor-restfulse/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "restfulSE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b746d7b3033fbb1c539462dfb1a5981a
+  md5: 80c91d615f5ff4997fce69087d3ea106
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-restfulse", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, Rtsne, org.Mm.eg.db, org.Hs.eg.db, BiocStyle, restfulSEData, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rhdf5client >=1.22.0,<1.23.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rhdf5client >=1.24.0,<1.25.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bigrquery
     - r-dbi
@@ -38,15 +39,15 @@ requirements:
     - r-reshape2
     - r-rlang
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rhdf5client >=1.22.0,<1.23.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rhdf5client >=1.24.0,<1.25.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bigrquery
     - r-dbi
diff --git a/recipes/bioconductor-restfulsedata/meta.yaml b/recipes/bioconductor-restfulsedata/meta.yaml
index ea8b5003020a0..8e3b21dac9c8d 100644
--- a/recipes/bioconductor-restfulsedata/meta.yaml
+++ b/recipes/bioconductor-restfulsedata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.1" %}
+{% set version = "1.24.0" %}
 {% set name = "restfulSEData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e92deb8a55a329887e87c9d4520e4b9e
+  md5: c69fe04b8675edd0faa593fb5ffc72c8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-restfulsedata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, rhdf5client
 requirements:
   host:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-restfulsedata/post-link.sh b/recipes/bioconductor-restfulsedata/post-link.sh
index 4242d77395d84..08150a2be497b 100644
--- a/recipes/bioconductor-restfulsedata/post-link.sh
+++ b/recipes/bioconductor-restfulsedata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "restfulsedata-1.22.1"
+installBiocDataPackage.sh "restfulsedata-1.24.0"
diff --git a/recipes/bioconductor-retrofit/meta.yaml b/recipes/bioconductor-retrofit/meta.yaml
index ea56377150869..82688026bb8d0 100644
--- a/recipes/bioconductor-retrofit/meta.yaml
+++ b/recipes/bioconductor-retrofit/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "retrofit" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 5634b1f69b84d0477586d9cda2223903
+  md5: 2b804a752a293f14495e94adb39df466
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-retrofit", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, DescTools, ggplot2, corrplot, cowplot, grid, colorspace, png, reshape2, pals, RCurl
 requirements:
   host:
diff --git a/recipes/rmats2sashimiplot/build_failure.linux-64.yaml b/recipes/bioconductor-reusedata/build_failure.linux-64.yaml
similarity index 51%
rename from recipes/rmats2sashimiplot/build_failure.linux-64.yaml
rename to recipes/bioconductor-reusedata/build_failure.linux-64.yaml
index 0048cbb0afd57..ecc86f7cff23e 100644
--- a/recipes/rmats2sashimiplot/build_failure.linux-64.yaml
+++ b/recipes/bioconductor-reusedata/build_failure.linux-64.yaml
@@ -1,43 +1,32 @@
-recipe_sha: 818b19264e031ab0aafc69a65856602ab4de67b68aed3fe7e3117d898e0765f6  # The commit at which this recipe failed to build.
+recipe_sha: 1370555a597842bfc527b0664421636a289d7b039c85298dda7098e9b36ad0b9  # The commit at which this recipe failed to build.
 skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
-log: |2-
-      pip:              23.1.2-pyhd8ed1ab_0        conda-forge
-      python:           3.10.11-he550d4f_0_cpython conda-forge
-      readline:         8.2-h8228510_1             conda-forge
-      setuptools:       67.7.2-pyhd8ed1ab_0        conda-forge
-      tk:               8.6.12-h27826a3_0          conda-forge
-      tzdata:           2023c-h71feb2d_0           conda-forge
-      wheel:            0.40.0-pyhd8ed1ab_0        conda-forge
-      xz:               5.2.6-h166bdaf_0           conda-forge
-
-  Preparing transaction: ...working... done
-  Verifying transaction: ...working... done
-  Executing transaction: ...working... done
-  [34mReloading output folder: [0m[34m/opt/conda/[0m[34mconda-bld[0m
+log: |-
   [?25l[2K[0G[] 0.0s
-  [2K[1A[2K[0Gopt/conda/conda-bld/linux-64                         1.5kB @  11.4MB/s  0.0s
-  opt/conda/conda-bld/noarch                         127.0 B @   2.6MB/s  0.0s
+  [2K[1A[2K[0Gopt/conda/conda-bld/linux-64                        ??.?MB @  ??.?MB/s 0 failed  0.0s
+  opt/conda/conda-bld/noarch                         127.0 B @   2.0MB/s  0.0s
   [?25h[34mReloading output folder: [0m[34m/opt/conda/[0m[34mconda-bld[0m
-  [?25l[2K[0Gopt/conda/conda-bld/linux-64                         1.5kB @  19.5MB/s  0.0s
-  opt/conda/conda-bld/noarch                         127.0 B @   3.3MB/s  0.0s
+  [?25l[2K[0G[] 0.0s
+  [2K[1A[2K[0Gopt/conda/conda-bld/linux-64                        ??.?MB @  ??.?MB/s 0 failed  0.0s
+  opt/conda/conda-bld/noarch                         127.0 B @   2.0MB/s  0.0s
   [?25hMamba failed to solve:
-   - python_abi 3.10.* *_cp310
-   - numpy
-   - python >=3.10,<3.11.0a0
-   - scipy
-   - pysam
-   - bedtools
-   - matplotlib 3.3.*
-   - samtools
+   - bioconductor-basilisk >=1.14.0,<1.15.0
+   - bioconductor-biocfilecache >=2.10.0,<2.11.0
+   - bioconductor-rcwl >=1.18.0,<1.19.0
+   - r-yaml
+   - bioconductor-s4vectors >=0.40.0,<0.41.0
+   - r-base 4.3.*
+   - bioconductor-rcwlpipelines >=1.18.0,<1.19.0
+   - r-jsonlite
 
   with channels:
+   - file:///opt/host-conda-bld
    - conda-forge
    - bioconda
    - defaults
 
   The reported errors are:
   - Encountered problems while solving:
-  -   - package matplotlib-3.3.2-h06a4308_0 requires matplotlib-base >=3.3.2,<3.3.3.0a0, but none of the providers can be installed
+  -   - nothing provides requested bioconductor-rcwlpipelines >=1.18.0,<1.19.0
   -
 
   Leaving build/test directories:
@@ -55,28 +44,29 @@ log: |2-
   Traceback (most recent call last):
     File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 141, in mamba_get_install_actions
       solution = solver.solve_for_action(_specs, prefix)
-    File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 230, in solve_for_action
+    File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 244, in solve_for_action
       t = self.solve(specs)
-    File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 220, in solve
+    File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 234, in solve
       raise RuntimeError("Solver could not find solution."  error_string)
   RuntimeError: Solver could not find solution.Mamba failed to solve:
-   - python_abi 3.10.* *_cp310
-   - numpy
-   - python >=3.10,<3.11.0a0
-   - scipy
-   - pysam
-   - bedtools
-   - matplotlib 3.3.*
-   - samtools
+   - bioconductor-basilisk >=1.14.0,<1.15.0
+   - bioconductor-biocfilecache >=2.10.0,<2.11.0
+   - bioconductor-rcwl >=1.18.0,<1.19.0
+   - r-yaml
+   - bioconductor-s4vectors >=0.40.0,<0.41.0
+   - r-base 4.3.*
+   - bioconductor-rcwlpipelines >=1.18.0,<1.19.0
+   - r-jsonlite
 
   with channels:
+   - file:///opt/host-conda-bld
    - conda-forge
    - bioconda
    - defaults
 
   The reported errors are:
   - Encountered problems while solving:
-  -   - package matplotlib-3.3.2-h06a4308_0 requires matplotlib-base >=3.3.2,<3.3.3.0a0, but none of the providers can be installed
+  -   - nothing provides requested bioconductor-rcwlpipelines >=1.18.0,<1.19.0
   -
 
   During handling of the above exception, another exception occurred:
@@ -92,13 +82,23 @@ log: |2-
       return build_tree(
     File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
       packages_from_this = build(metadata, stats,
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2115, in build
-      create_build_envs(top_level_pkg, notest)
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 1993, in create_build_envs
-      raise e
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 1972, in create_build_envs
-      environ.get_install_actions(m.config.test_prefix,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2038, in build
+      output_metas = expand_outputs([(m, need_source_download, need_reparse_in_env)])
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 787, in expand_outputs
+      for (output_dict, m) in deepcopy(_m).get_output_metadata_set(permit_unsatisfiable_variants=False):
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/metadata.py", line 2524, in get_output_metadata_set
+      conda_packages = finalize_outputs_pass(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/metadata.py", line 884, in finalize_outputs_pass
+      fm = finalize_metadata(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 547, in finalize_metadata
+      build_unsat, host_unsat = add_upstream_pins(m,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 409, in add_upstream_pins
+      host_deps, host_unsat, extra_run_specs_from_host = _read_upstream_pin_files(m, 'host',
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 374, in _read_upstream_pin_files
+      deps, actions, unsat = get_env_dependencies(m, env, m.config.variant,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 131, in get_env_dependencies
+      actions = environ.get_install_actions(tmpdir, tuple(dependencies), env,
     File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 150, in mamba_get_install_actions
       raise err
-  conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("matplotlib==3.3.2=h06a4308_0"), MatchSpec("matplotlib-base[version='>=3.3.2,<3.3.3.0a0']")}
+  conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("bioconductor-rcwlpipelines[version='>=1.18.0,<1.19.0']")}
 # Last 100 lines of the build log.
diff --git a/recipes/bioconductor-reusedata/meta.yaml b/recipes/bioconductor-reusedata/meta.yaml
index f45c8f9250f15..3e52defa7ad81 100644
--- a/recipes/bioconductor-reusedata/meta.yaml
+++ b/recipes/bioconductor-reusedata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.2" %}
 {% set name = "ReUseData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 93524bd7dc0a684ac5e2413f414197bd
+  md5: c0041ec5d810d0d043c7375e04e78c06
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-reusedata", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
+# Suggests: knitr, rmarkdown, testthat (>= 3.0.0), BiocStyle
 requirements:
   host:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-rcwl >=1.16.0,<1.17.0'
-    - 'bioconductor-rcwlpipelines >=1.16.0,<1.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-rcwl >=1.18.0,<1.19.0'
+    - 'bioconductor-rcwlpipelines >=1.18.0,<1.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-jsonlite
     - r-yaml
   run:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-rcwl >=1.16.0,<1.17.0'
-    - 'bioconductor-rcwlpipelines >=1.16.0,<1.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-rcwl >=1.18.0,<1.19.0'
+    - 'bioconductor-rcwlpipelines >=1.18.0,<1.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-jsonlite
     - r-yaml
diff --git a/recipes/bioconductor-rexposome/meta.yaml b/recipes/bioconductor-rexposome/meta.yaml
index dbe866c47fb93..83b17e2db684f 100644
--- a/recipes/bioconductor-rexposome/meta.yaml
+++ b/recipes/bioconductor-rexposome/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.1" %}
 {% set name = "rexposome" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 46e7c4f67ccb5a1e7fc583d4eb36bb0f
+  md5: 5dec247e3db216fed87e97cbfbf254cc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rexposome", max_pin="x.x") }}'
   noarch: generic
-# Suggests: mclust, flexmix, testthat, BiocStyle, knitr, rmarkdown
+# Suggests: mclust, flexmix, testthat, BiocStyle, knitr, formatR, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-circlize
     - r-corrplot
     - r-factominer
     - r-ggplot2
     - r-ggrepel
+    - r-ggridges
     - r-glmnet
     - r-gplots
     - r-gridextra
@@ -44,14 +46,15 @@ requirements:
     - r-scatterplot3d
     - r-stringr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-circlize
     - r-corrplot
     - r-factominer
     - r-ggplot2
     - r-ggrepel
+    - r-ggridges
     - r-glmnet
     - r-gplots
     - r-gridextra
diff --git a/recipes/bioconductor-rfarm/meta.yaml b/recipes/bioconductor-rfarm/meta.yaml
index 988866dc15b2d..0251337690723 100644
--- a/recipes/bioconductor-rfarm/meta.yaml
+++ b/recipes/bioconductor-rfarm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.11.2" %}
+{% set version = "1.14.0" %}
 {% set name = "rfaRm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f9f5b86baf2759fb096e5236b4ecacbd
+  md5: c12fb6805f6eecba196474a4527f241a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rfarm", max_pin="x.x") }}'
   noarch: generic
-# Suggests: R4RNA, treeio, knitr, BiocStyle, rmarkdown, BiocGenerics
+# Suggests: R4RNA, treeio, knitr, BiocStyle, rmarkdown, BiocGenerics, RUnit
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-httr
+    - r-jsonlite
     - r-magick
     - r-rsvg
     - r-rvest
     - r-stringi
     - r-xml2
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-httr
+    - r-jsonlite
     - r-magick
     - r-rsvg
     - r-rvest
diff --git a/recipes/bioconductor-rfastp/meta.yaml b/recipes/bioconductor-rfastp/meta.yaml
index 6cd2d96a5df41..8acaaa9125710 100644
--- a/recipes/bioconductor-rfastp/meta.yaml
+++ b/recipes/bioconductor-rfastp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "Rfastp" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9dfcaf1b205d287c9af287d0b6e86f1b
+  md5: 9f6903cb485151c4d3c368abf5193309
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rfastp", max_pin="x.x") }}'
 # Suggests: BiocStyle, testthat, knitr, rmarkdown
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-ggplot2
     - r-rcpp
@@ -31,8 +32,8 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-ggplot2
     - r-rcpp
diff --git a/recipes/bioconductor-rforproteomics/meta.yaml b/recipes/bioconductor-rforproteomics/meta.yaml
index 258d0fdab9cb3..4a0c7b03f4d54 100644
--- a/recipes/bioconductor-rforproteomics/meta.yaml
+++ b/recipes/bioconductor-rforproteomics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.1" %}
+{% set version = "1.40.0" %}
 {% set name = "RforProteomics" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2dbad7c535bf6a39299cad51ede9aafd
+  md5: 6d75aedb5902ea26a18e39da6848db4c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rforproteomics", max_pin="x.x") }}'
   noarch: generic
 # Suggests: AnnotationDbi, rpx (>= 2.0.3), DT, knitr, rmarkdown, BiocStyle, mzR, xcms, msdata, MALDIquant (>= 1.12), MALDIquantForeign, readBrukerFlexData, Rdisop, OrgMassSpecR, SummarizedExperiment, BRAIN, rols, hpar, GO.db, org.Hs.eg.db, e1071, biomaRt, RColorBrewer, ggplot2, reshape2, xtable, lattice, mzID, pRoloc, pRolocdata, MSnID, msmsTests, msmsEDA, DEP, corrplot, beanplot, Heatplus, gplots, VennDiagram, protViz, genefilter, plotly, gridExtra, dplyr, lubridate, magick, cleaver
 requirements:
   host:
-    - 'bioconductor-biocviews >=1.68.0,<1.69.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
+    - 'bioconductor-biocviews >=1.70.0,<1.71.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
     - r-base
     - r-biocmanager
     - r-r.utils
   run:
-    - 'bioconductor-biocviews >=1.68.0,<1.69.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
+    - 'bioconductor-biocviews >=1.70.0,<1.71.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
     - r-base
     - r-biocmanager
     - r-r.utils
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rforproteomics/post-link.sh b/recipes/bioconductor-rforproteomics/post-link.sh
index a5c4558d939da..8efbae4b8ad53 100644
--- a/recipes/bioconductor-rforproteomics/post-link.sh
+++ b/recipes/bioconductor-rforproteomics/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rforproteomics-1.38.1"
+installBiocDataPackage.sh "rforproteomics-1.40.0"
diff --git a/recipes/bioconductor-rfpred/meta.yaml b/recipes/bioconductor-rfpred/meta.yaml
index 465baae9b458d..3c6bb3e73f786 100644
--- a/recipes/bioconductor-rfpred/meta.yaml
+++ b/recipes/bioconductor-rfpred/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "rfPred" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 579bec97ce1052f870abdf8255c098b8
+  md5: 125e88d593749d17979dfd08a67ea330
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rfpred", max_pin="x.x") }}'
 # Suggests: BiocStyle
 requirements:
   host:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-data.table
     - libblas
     - liblapack
   run:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-data.table
   build:
diff --git a/recipes/bioconductor-rgadem/meta.yaml b/recipes/bioconductor-rgadem/meta.yaml
index 0a01ce8e67e15..9ea5c84cd97c1 100644
--- a/recipes/bioconductor-rgadem/meta.yaml
+++ b/recipes/bioconductor-rgadem/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.48.0" %}
+{% set version = "2.50.0" %}
 {% set name = "rGADEM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2cdce4776f91cfd938ce4930774c4b8a
+  md5: 17a121fa91f30cba09ed9dbb6b318555
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rgadem", max_pin="x.x") }}'
 # Suggests: BSgenome.Hsapiens.UCSC.hg19, rtracklayer
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-seqlogo >=1.66.0,<1.67.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-seqlogo >=1.68.0,<1.69.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-seqlogo >=1.66.0,<1.67.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-seqlogo >=1.68.0,<1.69.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-rgenometracks/meta.yaml b/recipes/bioconductor-rgenometracks/meta.yaml
index bfd570946be6d..56ab97b269241 100644
--- a/recipes/bioconductor-rgenometracks/meta.yaml
+++ b/recipes/bioconductor-rgenometracks/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "rGenomeTracks" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cfd465d74676896a9198011488d2f167
+  md5: 860c81f62e3abf51de44d4dcdcdbfeef
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rgenometracks", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, knitr, testthat (>= 3.0.0)
 # SystemRequirements: pyGenomeTracks (prefered to use install_pyGenomeTracks())
diff --git a/recipes/bioconductor-rgenometracksdata/meta.yaml b/recipes/bioconductor-rgenometracksdata/meta.yaml
index a2e79700c4baa..f99c1c756acc0 100644
--- a/recipes/bioconductor-rgenometracksdata/meta.yaml
+++ b/recipes/bioconductor-rgenometracksdata/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.0" %}
 {% set name = "rGenomeTracksData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 713103a8b4b4e48fa762ef589a43ffb8
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rgenometracksdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocManager, devtools
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rgmql/meta.yaml b/recipes/bioconductor-rgmql/meta.yaml
index 94c7ab649c2b7..661ae8f96255e 100644
--- a/recipes/bioconductor-rgmql/meta.yaml
+++ b/recipes/bioconductor-rgmql/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "RGMQL" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b8c068a6ec053a10f5651e97f405dd41
+  md5: 78de1ecefadf0a7729bf7b62b50a2c1b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rgmql", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rgmqllib >=1.20.0,<1.21.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rgmqllib >=1.22.0,<1.23.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -35,11 +36,11 @@ requirements:
     - r-rjava
     - r-xml2
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rgmqllib >=1.20.0,<1.21.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rgmqllib >=1.22.0,<1.23.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-dplyr
diff --git a/recipes/bioconductor-rgmqllib/meta.yaml b/recipes/bioconductor-rgmqllib/meta.yaml
index d9b7f55fe7321..8807cc1353fdd 100644
--- a/recipes/bioconductor-rgmqllib/meta.yaml
+++ b/recipes/bioconductor-rgmqllib/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "RGMQLlib" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a9153c4ade0f2149a136bdaefb123f6d
+  md5: d8ad27b1fe0c5eff6135285db972cab2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rgmqllib", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rgmqllib/post-link.sh b/recipes/bioconductor-rgmqllib/post-link.sh
index d86d102653d10..1b73edc0605c1 100644
--- a/recipes/bioconductor-rgmqllib/post-link.sh
+++ b/recipes/bioconductor-rgmqllib/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rgmqllib-1.20.0"
+installBiocDataPackage.sh "rgmqllib-1.22.0"
diff --git a/recipes/bioconductor-rgntx/meta.yaml b/recipes/bioconductor-rgntx/meta.yaml
index db65eb48352f6..265575b96ae87 100644
--- a/recipes/bioconductor-rgntx/meta.yaml
+++ b/recipes/bioconductor-rgntx/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "RgnTX" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,32 +11,33 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8a49f7294a76c9678e892b9f575c9efd
+  md5: 4ce438a2822a6541467c9781a3c48b26
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rgntx", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, rmarkdown, knitr, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-regioner >=1.32.0,<1.33.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-regioner >=1.34.0,<1.35.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
     - r-base
     - r-ggplot2
   run:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-regioner >=1.32.0,<1.33.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-regioner >=1.34.0,<1.35.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
     - r-base
     - r-ggplot2
diff --git a/recipes/bioconductor-rgoslin/meta.yaml b/recipes/bioconductor-rgoslin/meta.yaml
index 861b06ce8fdb8..ed8b1ed6bb203 100644
--- a/recipes/bioconductor-rgoslin/meta.yaml
+++ b/recipes/bioconductor-rgoslin/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "rgoslin" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 5835d13bddd6f4b07f4f41da411bec20
+  md5: 211ef77e63cc8394ebc5eee33328cd08
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rgoslin", max_pin="x.x") }}'
 # Suggests: testthat (>= 2.1.0), BiocStyle, knitr, rmarkdown, kableExtra, BiocManager, stringr, stringi, ggplot2, tibble, lipidr
 requirements:
   host:
diff --git a/recipes/bioconductor-rgraph2js/meta.yaml b/recipes/bioconductor-rgraph2js/meta.yaml
index 6f0f850f1a585..0212b86e5dd86 100644
--- a/recipes/bioconductor-rgraph2js/meta.yaml
+++ b/recipes/bioconductor-rgraph2js/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "RGraph2js" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 54578f3d4a51613dbc158bd4fafc3377
+  md5: ccb2f26623270911ba855aa97e1269e1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rgraph2js", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocStyle, BiocGenerics, xtable, sna
 # SystemRequirements: jQuery, jQueryUI, qTip2, D3js and Raphael are required Javascript libraries made available via the online CDNJS service (http://cdnjs.cloudflare.com).
 requirements:
   host:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-digest
     - r-rjson
     - r-whisker
     - jquery
   run:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-digest
     - r-rjson
diff --git a/recipes/bioconductor-rgraphviz/meta.yaml b/recipes/bioconductor-rgraphviz/meta.yaml
index b9045b863c929..299076f3c8b84 100644
--- a/recipes/bioconductor-rgraphviz/meta.yaml
+++ b/recipes/bioconductor-rgraphviz/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.44.0" %}
+{% set version = "2.46.0" %}
 {% set name = "Rgraphviz" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1d75a9db059a381ad08e88bf396be9e0
+  md5: b93e5d1c383b1e5cd06e4dec89a43ce8
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rgraphviz", max_pin="x.x") }}'
 # Suggests: RUnit, BiocGenerics, XML
 # SystemRequirements: optionally Graphviz (>= 2.16)
 requirements:
   host:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
   build:
     - {{ compiler('c') }}
@@ -41,4 +42,10 @@ about:
   license: EPL
   summary: 'Provides plotting capabilities for R graph objects'
   description: 'Interfaces R with the AT and T graphviz library for plotting R graph objects from the graph package.'
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
+    - usegalaxy-eu:{{ name|lower }}
 
diff --git a/recipes/bioconductor-rgreat/meta.yaml b/recipes/bioconductor-rgreat/meta.yaml
index 97c18c4b4c2a8..607172e832e2e 100644
--- a/recipes/bioconductor-rgreat/meta.yaml
+++ b/recipes/bioconductor-rgreat/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.2.0" %}
+{% set version = "2.4.0" %}
 {% set name = "rGREAT" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c4dba74b97e8ebb8e34ba72ae35e48dc
+  md5: 89ee57f3429887678846bba965ce84dc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rgreat", max_pin="x.x") }}'
 # Suggests: testthat (>= 0.3), knitr, rmarkdown, BiocManager, org.Mm.eg.db, msigdbr, KEGGREST, reactome.db
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.17.0,<3.18.0'
+    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.18.0,<3.19.0'
     - r-base
     - r-circlize
     - r-digest
@@ -47,16 +48,16 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.17.0,<3.18.0'
+    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.18.0,<3.19.0'
     - r-base
     - r-circlize
     - r-digest
diff --git a/recipes/bioconductor-rgsea/meta.yaml b/recipes/bioconductor-rgsea/meta.yaml
index f31a86d27a77d..9042f59b32251 100644
--- a/recipes/bioconductor-rgsea/meta.yaml
+++ b/recipes/bioconductor-rgsea/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "RGSEA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a3038e7d2181e5ece758f5f98a877c15
+  md5: 426ab6d4dc463399d014c6e76c3f8c75
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rgsea", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, GEOquery, knitr, RUnit
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-rgsepd/meta.yaml b/recipes/bioconductor-rgsepd/meta.yaml
index 3ede6367c46d0..c3b4954bb93cf 100644
--- a/recipes/bioconductor-rgsepd/meta.yaml
+++ b/recipes/bioconductor-rgsepd/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "rgsepd" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 8ccc8627b86ca25b735319429fd56c2c
+  md5: 0ca30d2f68c98bcc24cc5c5fbc5951b3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rgsepd", max_pin="x.x") }}'
   noarch: generic
 # Suggests: boot, tools, BiocGenerics, knitr, xtable
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-goseq >=1.52.0,<1.53.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-goseq >=1.54.0,<1.55.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-gplots
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-goseq >=1.52.0,<1.53.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-goseq >=1.54.0,<1.55.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-gplots
 test:
diff --git a/recipes/bioconductor-rgu34a.db/meta.yaml b/recipes/bioconductor-rgu34a.db/meta.yaml
index eeb53355f2cb0..460be188747cf 100644
--- a/recipes/bioconductor-rgu34a.db/meta.yaml
+++ b/recipes/bioconductor-rgu34a.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "rgu34a.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: e99dc4c05360b49a2249cb5de0b1dd4e
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rgu34a.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rgu34acdf/meta.yaml b/recipes/bioconductor-rgu34acdf/meta.yaml
index 28cf17672e23e..195b7856cd031 100644
--- a/recipes/bioconductor-rgu34acdf/meta.yaml
+++ b/recipes/bioconductor-rgu34acdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "rgu34acdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: dcfa7ecce00e529f93809759ed837b8d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rgu34acdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rgu34aprobe/meta.yaml b/recipes/bioconductor-rgu34aprobe/meta.yaml
index 7e74747aa85c4..2e3ca3c13f057 100644
--- a/recipes/bioconductor-rgu34aprobe/meta.yaml
+++ b/recipes/bioconductor-rgu34aprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "rgu34aprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 902aee259a2894fa8713c4bf9266c0e2
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rgu34aprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rgu34b.db/meta.yaml b/recipes/bioconductor-rgu34b.db/meta.yaml
index dfa15c3c3da20..2be3c456f72de 100644
--- a/recipes/bioconductor-rgu34b.db/meta.yaml
+++ b/recipes/bioconductor-rgu34b.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "rgu34b.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 5aeb80d5190bf2dcffa6b9264d3db33f
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rgu34b.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rgu34bcdf/meta.yaml b/recipes/bioconductor-rgu34bcdf/meta.yaml
index 8b4984130ab18..c49a72cd0134b 100644
--- a/recipes/bioconductor-rgu34bcdf/meta.yaml
+++ b/recipes/bioconductor-rgu34bcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "rgu34bcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 428b3a39f0d8addd7d863539b8cda6ea
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rgu34bcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rgu34bprobe/meta.yaml b/recipes/bioconductor-rgu34bprobe/meta.yaml
index f4e8278899c40..01e2a8f025744 100644
--- a/recipes/bioconductor-rgu34bprobe/meta.yaml
+++ b/recipes/bioconductor-rgu34bprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "rgu34bprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 2d6488309c5e54231a18e2ecf5608bb1
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rgu34bprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rgu34c.db/meta.yaml b/recipes/bioconductor-rgu34c.db/meta.yaml
index e558c4807edf5..61199d1900ac5 100644
--- a/recipes/bioconductor-rgu34c.db/meta.yaml
+++ b/recipes/bioconductor-rgu34c.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "rgu34c.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: e19f250869a9894bc9d069a4baf39a3c
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rgu34c.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rgu34ccdf/meta.yaml b/recipes/bioconductor-rgu34ccdf/meta.yaml
index ba71a4c1c16f8..8360de7865875 100644
--- a/recipes/bioconductor-rgu34ccdf/meta.yaml
+++ b/recipes/bioconductor-rgu34ccdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "rgu34ccdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 556a7130086004d26095594da31c6410
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rgu34ccdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rgu34cprobe/meta.yaml b/recipes/bioconductor-rgu34cprobe/meta.yaml
index 32165588998fb..1d514934bc4ab 100644
--- a/recipes/bioconductor-rgu34cprobe/meta.yaml
+++ b/recipes/bioconductor-rgu34cprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "rgu34cprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: d1a6c433acd30b95fa7be89147105b74
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rgu34cprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rguatlas4k.db/meta.yaml b/recipes/bioconductor-rguatlas4k.db/meta.yaml
index 620f460bdb39c..e8a0ab33ef629 100644
--- a/recipes/bioconductor-rguatlas4k.db/meta.yaml
+++ b/recipes/bioconductor-rguatlas4k.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "rguatlas4k.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 6a360676e08319ec5465c47c758110bd
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rguatlas4k.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rgug4105a.db/meta.yaml b/recipes/bioconductor-rgug4105a.db/meta.yaml
index 3348d296af03d..856bf606c03aa 100644
--- a/recipes/bioconductor-rgug4105a.db/meta.yaml
+++ b/recipes/bioconductor-rgug4105a.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "rgug4105a.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 3ccf354083ae36a7ae687fb8209c4e5b
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rgug4105a.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rgug4130a.db/meta.yaml b/recipes/bioconductor-rgug4130a.db/meta.yaml
index 6440322352513..29321c986ab3a 100644
--- a/recipes/bioconductor-rgug4130a.db/meta.yaml
+++ b/recipes/bioconductor-rgug4130a.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "rgug4130a.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 13643ac109aaf12590a5b6e379609b79
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rgug4130a.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rgug4131a.db/meta.yaml b/recipes/bioconductor-rgug4131a.db/meta.yaml
index 22167eb35715e..1c64418da6bcc 100644
--- a/recipes/bioconductor-rgug4131a.db/meta.yaml
+++ b/recipes/bioconductor-rgug4131a.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "rgug4131a.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 1168d4906fb8ce60cbc0fa6cfa3b8ec6
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rgug4131a.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rhdf5/meta.yaml b/recipes/bioconductor-rhdf5/meta.yaml
index 77ff1c59b2fd9..a7b53b6eee845 100644
--- a/recipes/bioconductor-rhdf5/meta.yaml
+++ b/recipes/bioconductor-rhdf5/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.44.0" %}
+{% set version = "2.46.1" %}
 {% set name = "rhdf5" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 19c8340a70f1ce28043ba56bb9da1238
+  md5: 947e662fe5f427ed0cc839e8049b431e
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rhdf5", max_pin="x.x") }}'
 # Suggests: bit64, BiocStyle, knitr, rmarkdown, testthat, bench, dplyr, ggplot2, mockery, BiocParallel
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-rhdf5filters >=1.12.0,<1.13.0'
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
+    - 'bioconductor-rhdf5filters >=1.14.0,<1.15.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-rhdf5filters >=1.12.0,<1.13.0'
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
+    - 'bioconductor-rhdf5filters >=1.14.0,<1.15.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   build:
     - {{ compiler('c') }}
@@ -44,6 +47,8 @@ about:
   summary: 'R Interface to HDF5'
   description: 'This package provides an interface between HDF5 and R. HDF5''s main features are the ability to store and access very large and/or complex datasets and a wide variety of metadata on mass storage (disk) through a completely portable file format. The rhdf5 package is thus suited for the exchange of large and/or complex datasets between R and other software package, and for letting R applications work on datasets that are larger than the available RAM.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:rhdf5
   parent_recipe:
diff --git a/recipes/bioconductor-rhdf5client/meta.yaml b/recipes/bioconductor-rhdf5client/meta.yaml
index 986ec5a995fa4..e9c92f1d8f081 100644
--- a/recipes/bioconductor-rhdf5client/meta.yaml
+++ b/recipes/bioconductor-rhdf5client/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "rhdf5client" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,16 +11,17 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: fa6adb48f0ca8e63d458da7f96ae3a97
+  md5: 9205b30177d59d75b7e544f795a90de5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rhdf5client", max_pin="x.x") }}'
 # Suggests: knitr, testthat, BiocStyle, DT, rmarkdown
 requirements:
   host:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
     - r-base
     - r-data.table
     - r-httr
@@ -28,7 +29,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
     - r-base
     - r-data.table
     - r-httr
diff --git a/recipes/bioconductor-rhdf5filters/meta.yaml b/recipes/bioconductor-rhdf5filters/meta.yaml
index 35e8c317dedbf..b28d9aa1fb49b 100644
--- a/recipes/bioconductor-rhdf5filters/meta.yaml
+++ b/recipes/bioconductor-rhdf5filters/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.1" %}
+{% set version = "1.14.1" %}
 {% set name = "rhdf5filters" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 8cef74eea9c788b536c4561603f265b4
+  md5: 3ecb2d30759fee6bde37bbb1f90fbf79
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rhdf5filters", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, rmarkdown, tinytest, rhdf5 (>= 2.34.0)
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-rhdf5lib >=1.22.0,<1.23.0'
+    - 'bioconductor-rhdf5lib >=1.24.0,<1.25.0'
     - r-base
   build:
     - {{ compiler('c') }}
@@ -42,4 +43,9 @@ about:
   summary: 'HDF5 Compression Filters'
   description: 'Provides a collection of additional compression filters for HDF5 datasets. The package is intended to provide seemless integration with rhdf5, however the compiled filters can also be used with external applications.'
   license_file: LICENSE
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name }}
 
diff --git a/recipes/bioconductor-rhdf5lib/configure b/recipes/bioconductor-rhdf5lib/configure
deleted file mode 100644
index 7c33b91f02917..0000000000000
--- a/recipes/bioconductor-rhdf5lib/configure
+++ /dev/null
@@ -1,4070 +0,0 @@
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-# Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.69 for Rhdf5lib 0.99.13.
-#
-# Report bugs to <mike.smith@embl.de>.
-#
-#
-# Copyright (C) 1992-1996, 1998-2012 Free Software Foundation, Inc.
-#
-#
-# This configure script is free software; the Free Software Foundation
-# gives unlimited permission to copy, distribute and modify it.
-## -------------------- ##
-## M4sh Initialization. ##
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-# Be more Bourne compatible
-DUALCASE=1; export DUALCASE # for MKS sh
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-
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-as_nl='
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-as_echo='\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'
-as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo
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-{
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-{
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-  ac_cv_prog_cxx_g=yes
-fi
-rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-fi
-rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-fi
-rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-   ac_cxx_werror_flag=$ac_save_cxx_werror_flag
-fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_cxx_g" >&5
-$as_echo "$ac_cv_prog_cxx_g" >&6; }
-if test "$ac_test_CXXFLAGS" = set; then
-  CXXFLAGS=$ac_save_CXXFLAGS
-elif test $ac_cv_prog_cxx_g = yes; then
-  if test "$GXX" = yes; then
-    CXXFLAGS="-g -O2"
-  else
-    CXXFLAGS="-g"
-  fi
-else
-  if test "$GXX" = yes; then
-    CXXFLAGS="-O2"
-  else
-    CXXFLAGS=
-  fi
-fi
-ac_ext=cpp
-ac_cpp='$CXXCPP $CPPFLAGS'
-ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
-
-
-#untar the lib
-BASEPBNAME="hdf5"
-PBTGZNAME=hdf5small_cxx_1.10.3.tar.gz
-cd src
-if test -d ./${BASEPBNAME}; then
-	echo 'found ' $BASEPBNAME ' header sources and tar archive;using what is there.'
-else
-	echo "untarring $PBTGZNAME ...";
-	gunzip -dc ${PBTGZNAME} | tar xf -;
-fi;
-
-echo "building the szip library...";
-cd ${BASEPBNAME}/szip;
-./configure --with-pic --enable-shared=no \
-    CC="${CC}" CFLAGS="${CFLAGS} -w"
-$MAKE
-
-echo "building the hdf5 library...";
-cd ../;
-## we add the '-w' flag to suppress all the warnings hdf5 prints
-./configure --with-pic --enable-shared=no --enable-cxx \
-    --with-szlib \
-    CXX="${CXX}" CXXFLAGS="${CXXFLAGS} ${CXXPICFLAGS} -w" \
-    CC="${CC}" CFLAGS="${CFLAGS} ${CPICFLAGS} -w" \
-    LDFLAGS="-L`pwd -P`/szip/src/.libs" \
-    CPPFLAGS="-I`pwd -P`/szip/src/"
-$MAKE lib
-cd ../../
-
-#update variables in Makevars
-HDF5_INCLUDE="${BASEPBNAME}/src"
-HDF5_CXX_INCLUDE="${BASEPBNAME}/c++/src"
-
-
-{ $as_echo "$as_me:${as_lineno-$LINENO}:    HDF5_INCLUDE=${HDF5_INCLUDE}" >&5
-$as_echo "$as_me:    HDF5_INCLUDE=${HDF5_INCLUDE}" >&6;}
-{ $as_echo "$as_me:${as_lineno-$LINENO}:    HDF5_CXX_INCLUDE=${HDF5_CXX_INCLUDE}" >&5
-$as_echo "$as_me:    HDF5_CXX_INCLUDE=${HDF5_CXX_INCLUDE}" >&6;}
-
-HDF5_LIB="${BASEPBNAME}/src/.libs/libhdf5.a"
-HDF5_CXX_LIB="${BASEPBNAME}/c++/src/.libs/libhdf5_cpp.a"
-SZIP_LIB="${BASEPBNAME}/szip/src/.libs/libsz.a"
-
-
-
-{ $as_echo "$as_me:${as_lineno-$LINENO}:    HDF5_LIB=${HDF5_LIB}" >&5
-$as_echo "$as_me:    HDF5_LIB=${HDF5_LIB}" >&6;}
-{ $as_echo "$as_me:${as_lineno-$LINENO}:    HDF5_CXX_LIB=${HDF5_CXX_LIB}" >&5
-$as_echo "$as_me:    HDF5_CXX_LIB=${HDF5_CXX_LIB}" >&6;}
-{ $as_echo "$as_me:${as_lineno-$LINENO}:    SZIP_LIB=${SZIP_LIB}" >&5
-$as_echo "$as_me:    SZIP_LIB=${SZIP_LIB}" >&6;}
-ac_config_files="$ac_config_files src/Makevars"
-
-cat >confcache <<\_ACEOF
-# This file is a shell script that caches the results of configure
-# tests run on this system so they can be shared between configure
-# scripts and configure runs, see configure's option --config-cache.
-# It is not useful on other systems.  If it contains results you don't
-# want to keep, you may remove or edit it.
-#
-# config.status only pays attention to the cache file if you give it
-# the --recheck option to rerun configure.
-#
-# `ac_cv_env_foo' variables (set or unset) will be overridden when
-# loading this file, other *unset* `ac_cv_foo' will be assigned the
-# following values.
-
-_ACEOF
-
-# The following way of writing the cache mishandles newlines in values,
-# but we know of no workaround that is simple, portable, and efficient.
-# So, we kill variables containing newlines.
-# Ultrix sh set writes to stderr and can't be redirected directly,
-# and sets the high bit in the cache file unless we assign to the vars.
-(
-  for ac_var in `(set) 2>&1 | sed -n 's/^\([a-zA-Z_][a-zA-Z0-9_]*\)=.*/\1/p'`; do
-    eval ac_val=\$$ac_var
-    case $ac_val in #(
-    *${as_nl}*)
-      case $ac_var in #(
-      *_cv_*) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cache variable $ac_var contains a newline" >&5
-$as_echo "$as_me: WARNING: cache variable $ac_var contains a newline" >&2;} ;;
-      esac
-      case $ac_var in #(
-      _ | IFS | as_nl) ;; #(
-      BASH_ARGV | BASH_SOURCE) eval $ac_var= ;; #(
-      *) { eval $ac_var=; unset $ac_var;} ;;
-      esac ;;
-    esac
-  done
-
-  (set) 2>&1 |
-    case $as_nl`(ac_space=' '; set) 2>&1` in #(
-    *${as_nl}ac_space=\ *)
-      # `set' does not quote correctly, so add quotes: double-quote
-      # substitution turns \\\\ into \\, and sed turns \\ into \.
-      sed -n \
-	"s/'/'\\\\''/g;
-	  s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\\2'/p"
-      ;; #(
-    *)
-      # `set' quotes correctly as required by POSIX, so do not add quotes.
-      sed -n "/^[_$as_cr_alnum]*_cv_[_$as_cr_alnum]*=/p"
-      ;;
-    esac |
-    sort
-) |
-  sed '
-     /^ac_cv_env_/b end
-     t clear
-     :clear
-     s/^\([^=]*\)=\(.*[{}].*\)$/test "${\1+set}" = set || &/
-     t end
-     s/^\([^=]*\)=\(.*\)$/\1=${\1=\2}/
-     :end' >>confcache
-if diff "$cache_file" confcache >/dev/null 2>&1; then :; else
-  if test -w "$cache_file"; then
-    if test "x$cache_file" != "x/dev/null"; then
-      { $as_echo "$as_me:${as_lineno-$LINENO}: updating cache $cache_file" >&5
-$as_echo "$as_me: updating cache $cache_file" >&6;}
-      if test ! -f "$cache_file" || test -h "$cache_file"; then
-	cat confcache >"$cache_file"
-      else
-        case $cache_file in #(
-        */* | ?:*)
-	  mv -f confcache "$cache_file"$$ &&
-	  mv -f "$cache_file"$$ "$cache_file" ;; #(
-        *)
-	  mv -f confcache "$cache_file" ;;
-	esac
-      fi
-    fi
-  else
-    { $as_echo "$as_me:${as_lineno-$LINENO}: not updating unwritable cache $cache_file" >&5
-$as_echo "$as_me: not updating unwritable cache $cache_file" >&6;}
-  fi
-fi
-rm -f confcache
-
-test "x$prefix" = xNONE && prefix=$ac_default_prefix
-# Let make expand exec_prefix.
-test "x$exec_prefix" = xNONE && exec_prefix='${prefix}'
-
-# Transform confdefs.h into DEFS.
-# Protect against shell expansion while executing Makefile rules.
-# Protect against Makefile macro expansion.
-#
-# If the first sed substitution is executed (which looks for macros that
-# take arguments), then branch to the quote section.  Otherwise,
-# look for a macro that doesn't take arguments.
-ac_script='
-:mline
-/\\$/{
- N
- s,\\\n,,
- b mline
-}
-t clear
-:clear
-s/^[	 ]*#[	 ]*define[	 ][	 ]*\([^	 (][^	 (]*([^)]*)\)[	 ]*\(.*\)/-D\1=\2/g
-t quote
-s/^[	 ]*#[	 ]*define[	 ][	 ]*\([^	 ][^	 ]*\)[	 ]*\(.*\)/-D\1=\2/g
-t quote
-b any
-:quote
-s/[	 `~#$^&*(){}\\|;'\''"<>?]/\\&/g
-s/\[/\\&/g
-s/\]/\\&/g
-s/\$/$$/g
-H
-:any
-${
-	g
-	s/^\n//
-	s/\n/ /g
-	p
-}
-'
-DEFS=`sed -n "$ac_script" confdefs.h`
-
-
-ac_libobjs=
-ac_ltlibobjs=
-U=
-for ac_i in : $LIBOBJS; do test "x$ac_i" = x: && continue
-  # 1. Remove the extension, and $U if already installed.
-  ac_script='s/\$U\././;s/\.o$//;s/\.obj$//'
-  ac_i=`$as_echo "$ac_i" | sed "$ac_script"`
-  # 2. Prepend LIBOBJDIR.  When used with automake>=1.10 LIBOBJDIR
-  #    will be set to the directory where LIBOBJS objects are built.
-  as_fn_append ac_libobjs " \${LIBOBJDIR}$ac_i\$U.$ac_objext"
-  as_fn_append ac_ltlibobjs " \${LIBOBJDIR}$ac_i"'$U.lo'
-done
-LIBOBJS=$ac_libobjs
-
-LTLIBOBJS=$ac_ltlibobjs
-
-
-
-: "${CONFIG_STATUS=./config.status}"
-ac_write_fail=0
-ac_clean_files_save=$ac_clean_files
-ac_clean_files="$ac_clean_files $CONFIG_STATUS"
-{ $as_echo "$as_me:${as_lineno-$LINENO}: creating $CONFIG_STATUS" >&5
-$as_echo "$as_me: creating $CONFIG_STATUS" >&6;}
-as_write_fail=0
-cat >$CONFIG_STATUS <<_ASEOF || as_write_fail=1
-#! $SHELL
-# Generated by $as_me.
-# Run this file to recreate the current configuration.
-# Compiler output produced by configure, useful for debugging
-# configure, is in config.log if it exists.
-
-debug=false
-ac_cs_recheck=false
-ac_cs_silent=false
-
-SHELL=\${CONFIG_SHELL-$SHELL}
-export SHELL
-_ASEOF
-cat >>$CONFIG_STATUS <<\_ASEOF || as_write_fail=1
-## -------------------- ##
-## M4sh Initialization. ##
-## -------------------- ##
-
-# Be more Bourne compatible
-DUALCASE=1; export DUALCASE # for MKS sh
-if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then :
-  emulate sh
-  NULLCMD=:
-  # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
-  # is contrary to our usage.  Disable this feature.
-  alias -g '${1+"$@"}'='"$@"'
-  setopt NO_GLOB_SUBST
-else
-  case `(set -o) 2>/dev/null` in #(
-  *posix*) :
-    set -o posix ;; #(
-  *) :
-     ;;
-esac
-fi
-
-
-as_nl='
-'
-export as_nl
-# Printing a long string crashes Solaris 7 /usr/bin/printf.
-as_echo='\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'
-as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo
-as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo$as_echo
-# Prefer a ksh shell builtin over an external printf program on Solaris,
-# but without wasting forks for bash or zsh.
-if test -z "$BASH_VERSION$ZSH_VERSION" \
-    && (test "X`print -r -- $as_echo`" = "X$as_echo") 2>/dev/null; then
-  as_echo='print -r --'
-  as_echo_n='print -rn --'
-elif (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
-  as_echo='printf %s\n'
-  as_echo_n='printf %s'
-else
-  if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
-    as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
-    as_echo_n='/usr/ucb/echo -n'
-  else
-    as_echo_body='eval expr "X$1" : "X\\(.*\\)"'
-    as_echo_n_body='eval
-      arg=$1;
-      case $arg in #(
-      *"$as_nl"*)
-	expr "X$arg" : "X\\(.*\\)$as_nl";
-	arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
-      esac;
-      expr "X$arg" : "X\\(.*\\)" | tr -d "$as_nl"
-    '
-    export as_echo_n_body
-    as_echo_n='sh -c $as_echo_n_body as_echo'
-  fi
-  export as_echo_body
-  as_echo='sh -c $as_echo_body as_echo'
-fi
-
-# The user is always right.
-if test "${PATH_SEPARATOR+set}" != set; then
-  PATH_SEPARATOR=:
-  (PATH='/bin;/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 && {
-    (PATH='/bin:/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 ||
-      PATH_SEPARATOR=';'
-  }
-fi
-
-
-# IFS
-# We need space, tab and new line, in precisely that order.  Quoting is
-# there to prevent editors from complaining about space-tab.
-# (If _AS_PATH_WALK were called with IFS unset, it would disable word
-# splitting by setting IFS to empty value.)
-IFS=" ""	$as_nl"
-
-# Find who we are.  Look in the path if we contain no directory separator.
-as_myself=
-case $0 in #((
-  *[\\/]* ) as_myself=$0 ;;
-  *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-for as_dir in $PATH
-do
-  IFS=$as_save_IFS
-  test -z "$as_dir" && as_dir=.
-    test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
-  done
-IFS=$as_save_IFS
-
-     ;;
-esac
-# We did not find ourselves, most probably we were run as `sh COMMAND'
-# in which case we are not to be found in the path.
-if test "x$as_myself" = x; then
-  as_myself=$0
-fi
-if test ! -f "$as_myself"; then
-  $as_echo "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2
-  exit 1
-fi
-
-# Unset variables that we do not need and which cause bugs (e.g. in
-# pre-3.0 UWIN ksh).  But do not cause bugs in bash 2.01; the "|| exit 1"
-# suppresses any "Segmentation fault" message there.  '((' could
-# trigger a bug in pdksh 5.2.14.
-for as_var in BASH_ENV ENV MAIL MAILPATH
-do eval test x\${$as_var+set} = xset \
-  && ( (unset $as_var) || exit 1) >/dev/null 2>&1 && unset $as_var || :
-done
-PS1='$ '
-PS2='> '
-PS4='+ '
-
-# NLS nuisances.
-LC_ALL=C
-export LC_ALL
-LANGUAGE=C
-export LANGUAGE
-
-# CDPATH.
-(unset CDPATH) >/dev/null 2>&1 && unset CDPATH
-
-
-# as_fn_error STATUS ERROR [LINENO LOG_FD]
-# ----------------------------------------
-# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are
-# provided, also output the error to LOG_FD, referencing LINENO. Then exit the
-# script with STATUS, using 1 if that was 0.
-as_fn_error ()
-{
-  as_status=$1; test $as_status -eq 0 && as_status=1
-  if test "$4"; then
-    as_lineno=${as_lineno-"$3"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
-    $as_echo "$as_me:${as_lineno-$LINENO}: error: $2" >&$4
-  fi
-  $as_echo "$as_me: error: $2" >&2
-  as_fn_exit $as_status
-} # as_fn_error
-
-
-# as_fn_set_status STATUS
-# -----------------------
-# Set $? to STATUS, without forking.
-as_fn_set_status ()
-{
-  return $1
-} # as_fn_set_status
-
-# as_fn_exit STATUS
-# -----------------
-# Exit the shell with STATUS, even in a "trap 0" or "set -e" context.
-as_fn_exit ()
-{
-  set +e
-  as_fn_set_status $1
-  exit $1
-} # as_fn_exit
-
-# as_fn_unset VAR
-# ---------------
-# Portably unset VAR.
-as_fn_unset ()
-{
-  { eval $1=; unset $1;}
-}
-as_unset=as_fn_unset
-# as_fn_append VAR VALUE
-# ----------------------
-# Append the text in VALUE to the end of the definition contained in VAR. Take
-# advantage of any shell optimizations that allow amortized linear growth over
-# repeated appends, instead of the typical quadratic growth present in naive
-# implementations.
-if (eval "as_var=1; as_var+=2; test x\$as_var = x12") 2>/dev/null; then :
-  eval 'as_fn_append ()
-  {
-    eval $1+=\$2
-  }'
-else
-  as_fn_append ()
-  {
-    eval $1=\$$1\$2
-  }
-fi # as_fn_append
-
-# as_fn_arith ARG...
-# ------------------
-# Perform arithmetic evaluation on the ARGs, and store the result in the
-# global $as_val. Take advantage of shells that can avoid forks. The arguments
-# must be portable across $(()) and expr.
-if (eval "test \$(( 1 + 1 )) = 2") 2>/dev/null; then :
-  eval 'as_fn_arith ()
-  {
-    as_val=$(( $* ))
-  }'
-else
-  as_fn_arith ()
-  {
-    as_val=`expr "$@" || test $? -eq 1`
-  }
-fi # as_fn_arith
-
-
-if expr a : '\(a\)' >/dev/null 2>&1 &&
-   test "X`expr 00001 : '.*\(...\)'`" = X001; then
-  as_expr=expr
-else
-  as_expr=false
-fi
-
-if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then
-  as_basename=basename
-else
-  as_basename=false
-fi
-
-if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then
-  as_dirname=dirname
-else
-  as_dirname=false
-fi
-
-as_me=`$as_basename -- "$0" ||
-$as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
-	 X"$0" : 'X\(//\)$' \| \
-	 X"$0" : 'X\(/\)' \| . 2>/dev/null ||
-$as_echo X/"$0" |
-    sed '/^.*\/\([^/][^/]*\)\/*$/{
-	    s//\1/
-	    q
-	  }
-	  /^X\/\(\/\/\)$/{
-	    s//\1/
-	    q
-	  }
-	  /^X\/\(\/\).*/{
-	    s//\1/
-	    q
-	  }
-	  s/.*/./; q'`
-
-# Avoid depending upon Character Ranges.
-as_cr_letters='abcdefghijklmnopqrstuvwxyz'
-as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
-as_cr_Letters=$as_cr_letters$as_cr_LETTERS
-as_cr_digits='0123456789'
-as_cr_alnum=$as_cr_Letters$as_cr_digits
-
-ECHO_C= ECHO_N= ECHO_T=
-case `echo -n x` in #(((((
--n*)
-  case `echo 'xy\c'` in
-  *c*) ECHO_T='	';;	# ECHO_T is single tab character.
-  xy)  ECHO_C='\c';;
-  *)   echo `echo ksh88 bug on AIX 6.1` > /dev/null
-       ECHO_T='	';;
-  esac;;
-*)
-  ECHO_N='-n';;
-esac
-
-rm -f conf$$ conf$$.exe conf$$.file
-if test -d conf$$.dir; then
-  rm -f conf$$.dir/conf$$.file
-else
-  rm -f conf$$.dir
-  mkdir conf$$.dir 2>/dev/null
-fi
-if (echo >conf$$.file) 2>/dev/null; then
-  if ln -s conf$$.file conf$$ 2>/dev/null; then
-    as_ln_s='ln -s'
-    # ... but there are two gotchas:
-    # 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
-    # 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
-    # In both cases, we have to default to `cp -pR'.
-    ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
-      as_ln_s='cp -pR'
-  elif ln conf$$.file conf$$ 2>/dev/null; then
-    as_ln_s=ln
-  else
-    as_ln_s='cp -pR'
-  fi
-else
-  as_ln_s='cp -pR'
-fi
-rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
-rmdir conf$$.dir 2>/dev/null
-
-
-# as_fn_mkdir_p
-# -------------
-# Create "$as_dir" as a directory, including parents if necessary.
-as_fn_mkdir_p ()
-{
-
-  case $as_dir in #(
-  -*) as_dir=./$as_dir;;
-  esac
-  test -d "$as_dir" || eval $as_mkdir_p || {
-    as_dirs=
-    while :; do
-      case $as_dir in #(
-      *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
-      *) as_qdir=$as_dir;;
-      esac
-      as_dirs="'$as_qdir' $as_dirs"
-      as_dir=`$as_dirname -- "$as_dir" ||
-$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
-	 X"$as_dir" : 'X\(//\)[^/]' \| \
-	 X"$as_dir" : 'X\(//\)$' \| \
-	 X"$as_dir" : 'X\(/\)' \| . 2>/dev/null ||
-$as_echo X"$as_dir" |
-    sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
-	    s//\1/
-	    q
-	  }
-	  /^X\(\/\/\)[^/].*/{
-	    s//\1/
-	    q
-	  }
-	  /^X\(\/\/\)$/{
-	    s//\1/
-	    q
-	  }
-	  /^X\(\/\).*/{
-	    s//\1/
-	    q
-	  }
-	  s/.*/./; q'`
-      test -d "$as_dir" && break
-    done
-    test -z "$as_dirs" || eval "mkdir $as_dirs"
-  } || test -d "$as_dir" || as_fn_error $? "cannot create directory $as_dir"
-
-
-} # as_fn_mkdir_p
-if mkdir -p . 2>/dev/null; then
-  as_mkdir_p='mkdir -p "$as_dir"'
-else
-  test -d ./-p && rmdir ./-p
-  as_mkdir_p=false
-fi
-
-
-# as_fn_executable_p FILE
-# -----------------------
-# Test if FILE is an executable regular file.
-as_fn_executable_p ()
-{
-  test -f "$1" && test -x "$1"
-} # as_fn_executable_p
-as_test_x='test -x'
-as_executable_p=as_fn_executable_p
-
-# Sed expression to map a string onto a valid CPP name.
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diff --git a/recipes/bioconductor-rhdf5lib/configure.patch b/recipes/bioconductor-rhdf5lib/configure.patch
deleted file mode 100644
index f9a784c23dafb..0000000000000
--- a/recipes/bioconductor-rhdf5lib/configure.patch
+++ /dev/null
@@ -1,15 +0,0 @@
---- configure	2019-01-25 09:45:33.192414169 +0100
-+++ configure.patched	2019-01-26 14:47:04.555112587 +0100
-@@ -2881,10 +2881,10 @@
- cd ../;
- ## we add the '-w' flag to suppress all the warnings hdf5 prints
- ./configure --with-pic --enable-shared=no --enable-cxx \
--    --with-szlib \
-+    --with-szlib --with-zlib=${PREFIX} --prefix=${PREFIX} \
-     CXX="${CXX}" CXXFLAGS="${CXXFLAGS} ${CXXPICFLAGS} -w" \
-     CC="${CC}" CFLAGS="${CFLAGS} ${CPICFLAGS} -w" \
--    LDFLAGS="-L`pwd -P`/szip/src/.libs" \
-+    LDFLAGS="-L${PREFIX}/szip/src/.libs" \
-     CPPFLAGS="-I`pwd -P`/szip/src/"
- $MAKE lib
- cd ../../
diff --git a/recipes/bioconductor-rhdf5lib/configure.patched b/recipes/bioconductor-rhdf5lib/configure.patched
deleted file mode 100644
index a77cdaeaf4652..0000000000000
--- a/recipes/bioconductor-rhdf5lib/configure.patched
+++ /dev/null
@@ -1,4070 +0,0 @@
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-as_nl='
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-{
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-{
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-  ac_cv_prog_cxx_g=yes
-fi
-rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-fi
-rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-fi
-rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
-   ac_cxx_werror_flag=$ac_save_cxx_werror_flag
-fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_cxx_g" >&5
-$as_echo "$ac_cv_prog_cxx_g" >&6; }
-if test "$ac_test_CXXFLAGS" = set; then
-  CXXFLAGS=$ac_save_CXXFLAGS
-elif test $ac_cv_prog_cxx_g = yes; then
-  if test "$GXX" = yes; then
-    CXXFLAGS="-g -O2"
-  else
-    CXXFLAGS="-g"
-  fi
-else
-  if test "$GXX" = yes; then
-    CXXFLAGS="-O2"
-  else
-    CXXFLAGS=
-  fi
-fi
-ac_ext=cpp
-ac_cpp='$CXXCPP $CPPFLAGS'
-ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
-
-
-#untar the lib
-BASEPBNAME="hdf5"
-PBTGZNAME=hdf5small_cxx_1.10.3.tar.gz
-cd src
-if test -d ./${BASEPBNAME}; then
-	echo 'found ' $BASEPBNAME ' header sources and tar archive;using what is there.'
-else
-	echo "untarring $PBTGZNAME ...";
-	gunzip -dc ${PBTGZNAME} | tar xf -;
-fi;
-
-echo "building the szip library...";
-cd ${BASEPBNAME}/szip;
-./configure --with-pic --enable-shared=no \
-    CC="${CC}" CFLAGS="${CFLAGS} -w"
-$MAKE
-
-echo "building the hdf5 library...";
-cd ../;
-## we add the '-w' flag to suppress all the warnings hdf5 prints
-./configure --with-pic --enable-shared=no --enable-cxx \
-    --with-szlib --with-zlib=${PREFIX} --prefix=${PREFIX} \
-    CXX="${CXX}" CXXFLAGS="${CXXFLAGS} ${CXXPICFLAGS} -w" \
-    CC="${CC}" CFLAGS="${CFLAGS} ${CPICFLAGS} -w" \
-    LDFLAGS="-L${PREFIX}/szip/src/.libs" \
-    CPPFLAGS="-I`pwd -P`/szip/src/"
-$MAKE lib
-cd ../../
-
-#update variables in Makevars
-HDF5_INCLUDE="${BASEPBNAME}/src"
-HDF5_CXX_INCLUDE="${BASEPBNAME}/c++/src"
-
-
-{ $as_echo "$as_me:${as_lineno-$LINENO}:    HDF5_INCLUDE=${HDF5_INCLUDE}" >&5
-$as_echo "$as_me:    HDF5_INCLUDE=${HDF5_INCLUDE}" >&6;}
-{ $as_echo "$as_me:${as_lineno-$LINENO}:    HDF5_CXX_INCLUDE=${HDF5_CXX_INCLUDE}" >&5
-$as_echo "$as_me:    HDF5_CXX_INCLUDE=${HDF5_CXX_INCLUDE}" >&6;}
-
-HDF5_LIB="${BASEPBNAME}/src/.libs/libhdf5.a"
-HDF5_CXX_LIB="${BASEPBNAME}/c++/src/.libs/libhdf5_cpp.a"
-SZIP_LIB="${BASEPBNAME}/szip/src/.libs/libsz.a"
-
-
-
-{ $as_echo "$as_me:${as_lineno-$LINENO}:    HDF5_LIB=${HDF5_LIB}" >&5
-$as_echo "$as_me:    HDF5_LIB=${HDF5_LIB}" >&6;}
-{ $as_echo "$as_me:${as_lineno-$LINENO}:    HDF5_CXX_LIB=${HDF5_CXX_LIB}" >&5
-$as_echo "$as_me:    HDF5_CXX_LIB=${HDF5_CXX_LIB}" >&6;}
-{ $as_echo "$as_me:${as_lineno-$LINENO}:    SZIP_LIB=${SZIP_LIB}" >&5
-$as_echo "$as_me:    SZIP_LIB=${SZIP_LIB}" >&6;}
-ac_config_files="$ac_config_files src/Makevars"
-
-cat >confcache <<\_ACEOF
-# This file is a shell script that caches the results of configure
-# tests run on this system so they can be shared between configure
-# scripts and configure runs, see configure's option --config-cache.
-# It is not useful on other systems.  If it contains results you don't
-# want to keep, you may remove or edit it.
-#
-# config.status only pays attention to the cache file if you give it
-# the --recheck option to rerun configure.
-#
-# `ac_cv_env_foo' variables (set or unset) will be overridden when
-# loading this file, other *unset* `ac_cv_foo' will be assigned the
-# following values.
-
-_ACEOF
-
-# The following way of writing the cache mishandles newlines in values,
-# but we know of no workaround that is simple, portable, and efficient.
-# So, we kill variables containing newlines.
-# Ultrix sh set writes to stderr and can't be redirected directly,
-# and sets the high bit in the cache file unless we assign to the vars.
-(
-  for ac_var in `(set) 2>&1 | sed -n 's/^\([a-zA-Z_][a-zA-Z0-9_]*\)=.*/\1/p'`; do
-    eval ac_val=\$$ac_var
-    case $ac_val in #(
-    *${as_nl}*)
-      case $ac_var in #(
-      *_cv_*) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cache variable $ac_var contains a newline" >&5
-$as_echo "$as_me: WARNING: cache variable $ac_var contains a newline" >&2;} ;;
-      esac
-      case $ac_var in #(
-      _ | IFS | as_nl) ;; #(
-      BASH_ARGV | BASH_SOURCE) eval $ac_var= ;; #(
-      *) { eval $ac_var=; unset $ac_var;} ;;
-      esac ;;
-    esac
-  done
-
-  (set) 2>&1 |
-    case $as_nl`(ac_space=' '; set) 2>&1` in #(
-    *${as_nl}ac_space=\ *)
-      # `set' does not quote correctly, so add quotes: double-quote
-      # substitution turns \\\\ into \\, and sed turns \\ into \.
-      sed -n \
-	"s/'/'\\\\''/g;
-	  s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\\2'/p"
-      ;; #(
-    *)
-      # `set' quotes correctly as required by POSIX, so do not add quotes.
-      sed -n "/^[_$as_cr_alnum]*_cv_[_$as_cr_alnum]*=/p"
-      ;;
-    esac |
-    sort
-) |
-  sed '
-     /^ac_cv_env_/b end
-     t clear
-     :clear
-     s/^\([^=]*\)=\(.*[{}].*\)$/test "${\1+set}" = set || &/
-     t end
-     s/^\([^=]*\)=\(.*\)$/\1=${\1=\2}/
-     :end' >>confcache
-if diff "$cache_file" confcache >/dev/null 2>&1; then :; else
-  if test -w "$cache_file"; then
-    if test "x$cache_file" != "x/dev/null"; then
-      { $as_echo "$as_me:${as_lineno-$LINENO}: updating cache $cache_file" >&5
-$as_echo "$as_me: updating cache $cache_file" >&6;}
-      if test ! -f "$cache_file" || test -h "$cache_file"; then
-	cat confcache >"$cache_file"
-      else
-        case $cache_file in #(
-        */* | ?:*)
-	  mv -f confcache "$cache_file"$$ &&
-	  mv -f "$cache_file"$$ "$cache_file" ;; #(
-        *)
-	  mv -f confcache "$cache_file" ;;
-	esac
-      fi
-    fi
-  else
-    { $as_echo "$as_me:${as_lineno-$LINENO}: not updating unwritable cache $cache_file" >&5
-$as_echo "$as_me: not updating unwritable cache $cache_file" >&6;}
-  fi
-fi
-rm -f confcache
-
-test "x$prefix" = xNONE && prefix=$ac_default_prefix
-# Let make expand exec_prefix.
-test "x$exec_prefix" = xNONE && exec_prefix='${prefix}'
-
-# Transform confdefs.h into DEFS.
-# Protect against shell expansion while executing Makefile rules.
-# Protect against Makefile macro expansion.
-#
-# If the first sed substitution is executed (which looks for macros that
-# take arguments), then branch to the quote section.  Otherwise,
-# look for a macro that doesn't take arguments.
-ac_script='
-:mline
-/\\$/{
- N
- s,\\\n,,
- b mline
-}
-t clear
-:clear
-s/^[	 ]*#[	 ]*define[	 ][	 ]*\([^	 (][^	 (]*([^)]*)\)[	 ]*\(.*\)/-D\1=\2/g
-t quote
-s/^[	 ]*#[	 ]*define[	 ][	 ]*\([^	 ][^	 ]*\)[	 ]*\(.*\)/-D\1=\2/g
-t quote
-b any
-:quote
-s/[	 `~#$^&*(){}\\|;'\''"<>?]/\\&/g
-s/\[/\\&/g
-s/\]/\\&/g
-s/\$/$$/g
-H
-:any
-${
-	g
-	s/^\n//
-	s/\n/ /g
-	p
-}
-'
-DEFS=`sed -n "$ac_script" confdefs.h`
-
-
-ac_libobjs=
-ac_ltlibobjs=
-U=
-for ac_i in : $LIBOBJS; do test "x$ac_i" = x: && continue
-  # 1. Remove the extension, and $U if already installed.
-  ac_script='s/\$U\././;s/\.o$//;s/\.obj$//'
-  ac_i=`$as_echo "$ac_i" | sed "$ac_script"`
-  # 2. Prepend LIBOBJDIR.  When used with automake>=1.10 LIBOBJDIR
-  #    will be set to the directory where LIBOBJS objects are built.
-  as_fn_append ac_libobjs " \${LIBOBJDIR}$ac_i\$U.$ac_objext"
-  as_fn_append ac_ltlibobjs " \${LIBOBJDIR}$ac_i"'$U.lo'
-done
-LIBOBJS=$ac_libobjs
-
-LTLIBOBJS=$ac_ltlibobjs
-
-
-
-: "${CONFIG_STATUS=./config.status}"
-ac_write_fail=0
-ac_clean_files_save=$ac_clean_files
-ac_clean_files="$ac_clean_files $CONFIG_STATUS"
-{ $as_echo "$as_me:${as_lineno-$LINENO}: creating $CONFIG_STATUS" >&5
-$as_echo "$as_me: creating $CONFIG_STATUS" >&6;}
-as_write_fail=0
-cat >$CONFIG_STATUS <<_ASEOF || as_write_fail=1
-#! $SHELL
-# Generated by $as_me.
-# Run this file to recreate the current configuration.
-# Compiler output produced by configure, useful for debugging
-# configure, is in config.log if it exists.
-
-debug=false
-ac_cs_recheck=false
-ac_cs_silent=false
-
-SHELL=\${CONFIG_SHELL-$SHELL}
-export SHELL
-_ASEOF
-cat >>$CONFIG_STATUS <<\_ASEOF || as_write_fail=1
-## -------------------- ##
-## M4sh Initialization. ##
-## -------------------- ##
-
-# Be more Bourne compatible
-DUALCASE=1; export DUALCASE # for MKS sh
-if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then :
-  emulate sh
-  NULLCMD=:
-  # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
-  # is contrary to our usage.  Disable this feature.
-  alias -g '${1+"$@"}'='"$@"'
-  setopt NO_GLOB_SUBST
-else
-  case `(set -o) 2>/dev/null` in #(
-  *posix*) :
-    set -o posix ;; #(
-  *) :
-     ;;
-esac
-fi
-
-
-as_nl='
-'
-export as_nl
-# Printing a long string crashes Solaris 7 /usr/bin/printf.
-as_echo='\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'
-as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo
-as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo$as_echo
-# Prefer a ksh shell builtin over an external printf program on Solaris,
-# but without wasting forks for bash or zsh.
-if test -z "$BASH_VERSION$ZSH_VERSION" \
-    && (test "X`print -r -- $as_echo`" = "X$as_echo") 2>/dev/null; then
-  as_echo='print -r --'
-  as_echo_n='print -rn --'
-elif (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
-  as_echo='printf %s\n'
-  as_echo_n='printf %s'
-else
-  if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
-    as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
-    as_echo_n='/usr/ucb/echo -n'
-  else
-    as_echo_body='eval expr "X$1" : "X\\(.*\\)"'
-    as_echo_n_body='eval
-      arg=$1;
-      case $arg in #(
-      *"$as_nl"*)
-	expr "X$arg" : "X\\(.*\\)$as_nl";
-	arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
-      esac;
-      expr "X$arg" : "X\\(.*\\)" | tr -d "$as_nl"
-    '
-    export as_echo_n_body
-    as_echo_n='sh -c $as_echo_n_body as_echo'
-  fi
-  export as_echo_body
-  as_echo='sh -c $as_echo_body as_echo'
-fi
-
-# The user is always right.
-if test "${PATH_SEPARATOR+set}" != set; then
-  PATH_SEPARATOR=:
-  (PATH='/bin;/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 && {
-    (PATH='/bin:/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 ||
-      PATH_SEPARATOR=';'
-  }
-fi
-
-
-# IFS
-# We need space, tab and new line, in precisely that order.  Quoting is
-# there to prevent editors from complaining about space-tab.
-# (If _AS_PATH_WALK were called with IFS unset, it would disable word
-# splitting by setting IFS to empty value.)
-IFS=" ""	$as_nl"
-
-# Find who we are.  Look in the path if we contain no directory separator.
-as_myself=
-case $0 in #((
-  *[\\/]* ) as_myself=$0 ;;
-  *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-for as_dir in $PATH
-do
-  IFS=$as_save_IFS
-  test -z "$as_dir" && as_dir=.
-    test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
-  done
-IFS=$as_save_IFS
-
-     ;;
-esac
-# We did not find ourselves, most probably we were run as `sh COMMAND'
-# in which case we are not to be found in the path.
-if test "x$as_myself" = x; then
-  as_myself=$0
-fi
-if test ! -f "$as_myself"; then
-  $as_echo "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2
-  exit 1
-fi
-
-# Unset variables that we do not need and which cause bugs (e.g. in
-# pre-3.0 UWIN ksh).  But do not cause bugs in bash 2.01; the "|| exit 1"
-# suppresses any "Segmentation fault" message there.  '((' could
-# trigger a bug in pdksh 5.2.14.
-for as_var in BASH_ENV ENV MAIL MAILPATH
-do eval test x\${$as_var+set} = xset \
-  && ( (unset $as_var) || exit 1) >/dev/null 2>&1 && unset $as_var || :
-done
-PS1='$ '
-PS2='> '
-PS4='+ '
-
-# NLS nuisances.
-LC_ALL=C
-export LC_ALL
-LANGUAGE=C
-export LANGUAGE
-
-# CDPATH.
-(unset CDPATH) >/dev/null 2>&1 && unset CDPATH
-
-
-# as_fn_error STATUS ERROR [LINENO LOG_FD]
-# ----------------------------------------
-# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are
-# provided, also output the error to LOG_FD, referencing LINENO. Then exit the
-# script with STATUS, using 1 if that was 0.
-as_fn_error ()
-{
-  as_status=$1; test $as_status -eq 0 && as_status=1
-  if test "$4"; then
-    as_lineno=${as_lineno-"$3"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
-    $as_echo "$as_me:${as_lineno-$LINENO}: error: $2" >&$4
-  fi
-  $as_echo "$as_me: error: $2" >&2
-  as_fn_exit $as_status
-} # as_fn_error
-
-
-# as_fn_set_status STATUS
-# -----------------------
-# Set $? to STATUS, without forking.
-as_fn_set_status ()
-{
-  return $1
-} # as_fn_set_status
-
-# as_fn_exit STATUS
-# -----------------
-# Exit the shell with STATUS, even in a "trap 0" or "set -e" context.
-as_fn_exit ()
-{
-  set +e
-  as_fn_set_status $1
-  exit $1
-} # as_fn_exit
-
-# as_fn_unset VAR
-# ---------------
-# Portably unset VAR.
-as_fn_unset ()
-{
-  { eval $1=; unset $1;}
-}
-as_unset=as_fn_unset
-# as_fn_append VAR VALUE
-# ----------------------
-# Append the text in VALUE to the end of the definition contained in VAR. Take
-# advantage of any shell optimizations that allow amortized linear growth over
-# repeated appends, instead of the typical quadratic growth present in naive
-# implementations.
-if (eval "as_var=1; as_var+=2; test x\$as_var = x12") 2>/dev/null; then :
-  eval 'as_fn_append ()
-  {
-    eval $1+=\$2
-  }'
-else
-  as_fn_append ()
-  {
-    eval $1=\$$1\$2
-  }
-fi # as_fn_append
-
-# as_fn_arith ARG...
-# ------------------
-# Perform arithmetic evaluation on the ARGs, and store the result in the
-# global $as_val. Take advantage of shells that can avoid forks. The arguments
-# must be portable across $(()) and expr.
-if (eval "test \$(( 1 + 1 )) = 2") 2>/dev/null; then :
-  eval 'as_fn_arith ()
-  {
-    as_val=$(( $* ))
-  }'
-else
-  as_fn_arith ()
-  {
-    as_val=`expr "$@" || test $? -eq 1`
-  }
-fi # as_fn_arith
-
-
-if expr a : '\(a\)' >/dev/null 2>&1 &&
-   test "X`expr 00001 : '.*\(...\)'`" = X001; then
-  as_expr=expr
-else
-  as_expr=false
-fi
-
-if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then
-  as_basename=basename
-else
-  as_basename=false
-fi
-
-if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then
-  as_dirname=dirname
-else
-  as_dirname=false
-fi
-
-as_me=`$as_basename -- "$0" ||
-$as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
-	 X"$0" : 'X\(//\)$' \| \
-	 X"$0" : 'X\(/\)' \| . 2>/dev/null ||
-$as_echo X/"$0" |
-    sed '/^.*\/\([^/][^/]*\)\/*$/{
-	    s//\1/
-	    q
-	  }
-	  /^X\/\(\/\/\)$/{
-	    s//\1/
-	    q
-	  }
-	  /^X\/\(\/\).*/{
-	    s//\1/
-	    q
-	  }
-	  s/.*/./; q'`
-
-# Avoid depending upon Character Ranges.
-as_cr_letters='abcdefghijklmnopqrstuvwxyz'
-as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
-as_cr_Letters=$as_cr_letters$as_cr_LETTERS
-as_cr_digits='0123456789'
-as_cr_alnum=$as_cr_Letters$as_cr_digits
-
-ECHO_C= ECHO_N= ECHO_T=
-case `echo -n x` in #(((((
--n*)
-  case `echo 'xy\c'` in
-  *c*) ECHO_T='	';;	# ECHO_T is single tab character.
-  xy)  ECHO_C='\c';;
-  *)   echo `echo ksh88 bug on AIX 6.1` > /dev/null
-       ECHO_T='	';;
-  esac;;
-*)
-  ECHO_N='-n';;
-esac
-
-rm -f conf$$ conf$$.exe conf$$.file
-if test -d conf$$.dir; then
-  rm -f conf$$.dir/conf$$.file
-else
-  rm -f conf$$.dir
-  mkdir conf$$.dir 2>/dev/null
-fi
-if (echo >conf$$.file) 2>/dev/null; then
-  if ln -s conf$$.file conf$$ 2>/dev/null; then
-    as_ln_s='ln -s'
-    # ... but there are two gotchas:
-    # 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
-    # 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
-    # In both cases, we have to default to `cp -pR'.
-    ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
-      as_ln_s='cp -pR'
-  elif ln conf$$.file conf$$ 2>/dev/null; then
-    as_ln_s=ln
-  else
-    as_ln_s='cp -pR'
-  fi
-else
-  as_ln_s='cp -pR'
-fi
-rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
-rmdir conf$$.dir 2>/dev/null
-
-
-# as_fn_mkdir_p
-# -------------
-# Create "$as_dir" as a directory, including parents if necessary.
-as_fn_mkdir_p ()
-{
-
-  case $as_dir in #(
-  -*) as_dir=./$as_dir;;
-  esac
-  test -d "$as_dir" || eval $as_mkdir_p || {
-    as_dirs=
-    while :; do
-      case $as_dir in #(
-      *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
-      *) as_qdir=$as_dir;;
-      esac
-      as_dirs="'$as_qdir' $as_dirs"
-      as_dir=`$as_dirname -- "$as_dir" ||
-$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
-	 X"$as_dir" : 'X\(//\)[^/]' \| \
-	 X"$as_dir" : 'X\(//\)$' \| \
-	 X"$as_dir" : 'X\(/\)' \| . 2>/dev/null ||
-$as_echo X"$as_dir" |
-    sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
-	    s//\1/
-	    q
-	  }
-	  /^X\(\/\/\)[^/].*/{
-	    s//\1/
-	    q
-	  }
-	  /^X\(\/\/\)$/{
-	    s//\1/
-	    q
-	  }
-	  /^X\(\/\).*/{
-	    s//\1/
-	    q
-	  }
-	  s/.*/./; q'`
-      test -d "$as_dir" && break
-    done
-    test -z "$as_dirs" || eval "mkdir $as_dirs"
-  } || test -d "$as_dir" || as_fn_error $? "cannot create directory $as_dir"
-
-
-} # as_fn_mkdir_p
-if mkdir -p . 2>/dev/null; then
-  as_mkdir_p='mkdir -p "$as_dir"'
-else
-  test -d ./-p && rmdir ./-p
-  as_mkdir_p=false
-fi
-
-
-# as_fn_executable_p FILE
-# -----------------------
-# Test if FILE is an executable regular file.
-as_fn_executable_p ()
-{
-  test -f "$1" && test -x "$1"
-} # as_fn_executable_p
-as_test_x='test -x'
-as_executable_p=as_fn_executable_p
-
-# Sed expression to map a string onto a valid CPP name.
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-  $SHELL $CONFIG_STATUS $ac_config_status_args || ac_cs_success=false
-  exec 5>>config.log
-  # Use ||, not &&, to avoid exiting from the if with $? = 1, which
-  # would make configure fail if this is the last instruction.
-  $ac_cs_success || as_fn_exit 1
-fi
-if test -n "$ac_unrecognized_opts" && test "$enable_option_checking" != no; then
-  { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: unrecognized options: $ac_unrecognized_opts" >&5
-$as_echo "$as_me: WARNING: unrecognized options: $ac_unrecognized_opts" >&2;}
-fi
-
diff --git a/recipes/bioconductor-rhdf5lib/meta.yaml b/recipes/bioconductor-rhdf5lib/meta.yaml
index 067b1a04cf8e3..083cea6007bb4 100644
--- a/recipes/bioconductor-rhdf5lib/meta.yaml
+++ b/recipes/bioconductor-rhdf5lib/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "Rhdf5lib" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 27c19bd24858ba26ff4762d41f3b2a16
+  md5: 722160d55897324217ba8dc2cb60f3cd
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rhdf5lib", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, rmarkdown, tinytest, mockery
 # SystemRequirements: GNU make
 requirements:
@@ -39,6 +40,8 @@ about:
   summary: 'hdf5 library as an R package'
   description: 'Provides C and C++ hdf5 libraries.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   parent_recipe:
     name: bioconductor-rhdf5lib
     path: recipes/bioconductor-rhdf5lib
diff --git a/recipes/bioconductor-rhesus.db0/meta.yaml b/recipes/bioconductor-rhesus.db0/meta.yaml
index c44f1b4b386d8..72604a3cbf18b 100644
--- a/recipes/bioconductor-rhesus.db0/meta.yaml
+++ b/recipes/bioconductor-rhesus.db0/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "rhesus.db0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 16b4999171a6b36e72c19b3f15b46354
+  md5: 26d7aa426d23f0c64cb0918f90c32314
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rhesus.db0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rhesus.db0/post-link.sh b/recipes/bioconductor-rhesus.db0/post-link.sh
index 4d13d03af1f40..ff96f3afab411 100644
--- a/recipes/bioconductor-rhesus.db0/post-link.sh
+++ b/recipes/bioconductor-rhesus.db0/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rhesus.db0-3.17.0"
+installBiocDataPackage.sh "rhesus.db0-3.18.0"
diff --git a/recipes/bioconductor-rhesuscdf/meta.yaml b/recipes/bioconductor-rhesuscdf/meta.yaml
index cc7dff4a990b5..5551420081edf 100644
--- a/recipes/bioconductor-rhesuscdf/meta.yaml
+++ b/recipes/bioconductor-rhesuscdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "rhesuscdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 994e16da5dd31bc2796d0da40aa2634f
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rhesuscdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rhesusprobe/meta.yaml b/recipes/bioconductor-rhesusprobe/meta.yaml
index 4410c54c821e3..f06026d876a7c 100644
--- a/recipes/bioconductor-rhesusprobe/meta.yaml
+++ b/recipes/bioconductor-rhesusprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "rhesusprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 4169c1c997c4c08b027bc7489533e11e
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rhesusprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rheumaticconditionwollbold/meta.yaml b/recipes/bioconductor-rheumaticconditionwollbold/meta.yaml
index 27e070df145eb..52618980dd6d5 100644
--- a/recipes/bioconductor-rheumaticconditionwollbold/meta.yaml
+++ b/recipes/bioconductor-rheumaticconditionwollbold/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "rheumaticConditionWOLLBOLD" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 58d7b58e54ba5cbd75fafa85aa09f476
+  md5: 8c8a5f56b923fe79c4a4902028d6fc5c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rheumaticconditionwollbold", max_pin="x.x") }}'
   noarch: generic
 # Suggests: genefilter, Biobase, hgu133plus2.db
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rheumaticconditionwollbold/post-link.sh b/recipes/bioconductor-rheumaticconditionwollbold/post-link.sh
index 658d350311901..72f477eba6f72 100644
--- a/recipes/bioconductor-rheumaticconditionwollbold/post-link.sh
+++ b/recipes/bioconductor-rheumaticconditionwollbold/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rheumaticconditionwollbold-1.38.0"
+installBiocDataPackage.sh "rheumaticconditionwollbold-1.40.0"
diff --git a/recipes/bioconductor-rhisat2/meta.yaml b/recipes/bioconductor-rhisat2/meta.yaml
index eea04e8b05160..9bb4b0181af5c 100644
--- a/recipes/bioconductor-rhisat2/meta.yaml
+++ b/recipes/bioconductor-rhisat2/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "Rhisat2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7075cf678dc031a22f157fcf950a7e64
+  md5: bcfb03ad1e10fa471b46f2b214ddbb2a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rhisat2", max_pin="x.x") }}'
 # Suggests: testthat, knitr, rmarkdown, BiocStyle
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-sgseq >=1.34.0,<1.35.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-sgseq >=1.36.0,<1.37.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-sgseq >=1.34.0,<1.35.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-sgseq >=1.36.0,<1.37.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-rhtslib/meta.yaml b/recipes/bioconductor-rhtslib/meta.yaml
index 061b2f2176c4e..1965e9bb184d3 100644
--- a/recipes/bioconductor-rhtslib/meta.yaml
+++ b/recipes/bioconductor-rhtslib/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.2.0" %}
+{% set version = "2.4.0" %}
 {% set name = "Rhtslib" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 862d4cd4c10064f45fc69c63969a4881
+  md5: 8aa7fa3050a484702c3065c797948ba8
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rhtslib", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, BiocStyle
 # SystemRequirements: libbz2 & liblzma & libcurl (with header files), GNU make
 requirements:
   host:
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
   build:
     - {{ compiler('c') }}
@@ -42,6 +43,8 @@ about:
   description: 'This package provides version 1.15.1 of the ''HTSlib'' C library for high-throughput sequence analysis. The package is primarily useful to developers of other R packages who wish to make use of HTSlib. Motivation and instructions for use of this package are in the vignette, vignette(package="Rhtslib", "Rhtslib").'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/LGPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:rhtslib
     - doi:10.1038/nmeth.3252
diff --git a/recipes/bioconductor-ri16cod.db/meta.yaml b/recipes/bioconductor-ri16cod.db/meta.yaml
index 809b448fabd35..8bd8e75824883 100644
--- a/recipes/bioconductor-ri16cod.db/meta.yaml
+++ b/recipes/bioconductor-ri16cod.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.4.0" %}
 {% set name = "ri16cod.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: cd01b429295fdbba21dbe566effacbdd
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ri16cod.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ribocrypt/meta.yaml b/recipes/bioconductor-ribocrypt/meta.yaml
index 397596bcce7f1..88ff4d20e3b05 100644
--- a/recipes/bioconductor-ribocrypt/meta.yaml
+++ b/recipes/bioconductor-ribocrypt/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "RiboCrypt" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 77955ef06f1325b0e0b63971e7ae2aee
+  md5: b5551bc35ad9798b4b1b401f7a08b280
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ribocrypt", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, rmarkdown, BiocStyle, BSgenome, BSgenome.Hsapiens.UCSC.hg19
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-orfik >=1.20.0,<1.21.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-orfik >=1.22.0,<1.23.0'
     - r-base
     - r-bslib
     - r-data.table
@@ -49,14 +50,14 @@ requirements:
     - r-shinyjqui
     - r-stringr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-orfik >=1.20.0,<1.21.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-orfik >=1.22.0,<1.23.0'
     - r-base
     - r-bslib
     - r-data.table
diff --git a/recipes/bioconductor-ribodipa/meta.yaml b/recipes/bioconductor-ribodipa/meta.yaml
index bc9d90f73db21..e581d9847010c 100644
--- a/recipes/bioconductor-ribodipa/meta.yaml
+++ b/recipes/bioconductor-ribodipa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "RiboDiPA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 05d7eabe7434b8191f138d0bea0bef29
+  md5: 0aab649d27962694300a1e3b42b9417d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ribodipa", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-doparallel
@@ -42,16 +43,16 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-doparallel
diff --git a/recipes/bioconductor-riboprofiling/meta.yaml b/recipes/bioconductor-riboprofiling/meta.yaml
index a9d839aa7db0a..51945ec4291e6 100644
--- a/recipes/bioconductor-riboprofiling/meta.yaml
+++ b/recipes/bioconductor-riboprofiling/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "RiboProfiling" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cf30f41d5ac40e786a37ea0becb370d7
+  md5: ec32fb1993efa63a677422612e03ded7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-riboprofiling", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome.Hsapiens.UCSC.hg19, testthat, SummarizedExperiment
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-ggplot2
@@ -39,17 +40,17 @@ requirements:
     - r-reshape2
     - r-sqldf
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-ggplot2
diff --git a/recipes/bioconductor-ribor/meta.yaml b/recipes/bioconductor-ribor/meta.yaml
index fc43ff4e568ce..d88e8a7571a55 100644
--- a/recipes/bioconductor-ribor/meta.yaml
+++ b/recipes/bioconductor-ribor/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "ribor" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 62847bbc0483e71852fda8fd089729d0
+  md5: 6d86ac039324d8fa1b6c708f42da44e2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ribor", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -31,8 +32,8 @@ requirements:
     - r-tidyr
     - r-yaml
   run:
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-riboseqr/build.sh b/recipes/bioconductor-riboseqr/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-riboseqr/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-riboseqr/meta.yaml b/recipes/bioconductor-riboseqr/meta.yaml
new file mode 100644
index 0000000000000..548f9398d22d6
--- /dev/null
+++ b/recipes/bioconductor-riboseqr/meta.yaml
@@ -0,0 +1,51 @@
+{% set version = "1.36.0" %}
+{% set name = "riboSeqR" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: eb9c84e564128ad11960fac5955c4d2f
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-riboseqr", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, RUnit, BiocGenerics
+requirements:
+  host:
+    - 'bioconductor-bayseq >=2.36.0,<2.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-seqlogo >=1.68.0,<1.69.0'
+    - r-abind
+    - r-base
+  run:
+    - 'bioconductor-bayseq >=2.36.0,<2.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-seqlogo >=1.68.0,<1.69.0'
+    - r-abind
+    - r-base
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'Analysis of sequencing data from ribosome profiling experiments'
+  description: 'Plotting functions, frameshift detection and parsing of sequencing data from ribosome profiling experiments.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-ribosomeprofilingqc/meta.yaml b/recipes/bioconductor-ribosomeprofilingqc/meta.yaml
index df277d3caf594..a96b273f005a2 100644
--- a/recipes/bioconductor-ribosomeprofilingqc/meta.yaml
+++ b/recipes/bioconductor-ribosomeprofilingqc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "ribosomeProfilingQC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1c9cafb9bd9b9816cc073d7da37b1b4c
+  md5: f26a7222a62ed0c3462336d1c945cea6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ribosomeprofilingqc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocStyle, knitr, BSgenome.Drerio.UCSC.danRer10, edgeR, limma, testthat, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-edaseq >=2.34.0,<2.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-motifstack >=1.44.0,<1.45.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rsubread >=2.14.0,<2.15.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-ruvseq >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-edaseq >=2.36.0,<2.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-motifstack >=1.46.0,<1.47.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rsubread >=2.16.0,<2.17.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-ruvseq >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-cluster
     - r-ggfittext
@@ -45,23 +46,23 @@ requirements:
     - r-ggrepel
     - r-scales
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-edaseq >=2.34.0,<2.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-motifstack >=1.44.0,<1.45.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rsubread >=2.14.0,<2.15.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-ruvseq >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-edaseq >=2.36.0,<2.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-motifstack >=1.46.0,<1.47.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rsubread >=2.16.0,<2.17.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-ruvseq >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-cluster
     - r-ggfittext
diff --git a/recipes/bioconductor-ricecdf/meta.yaml b/recipes/bioconductor-ricecdf/meta.yaml
index a93eb09926db1..f47b3ea6adb91 100644
--- a/recipes/bioconductor-ricecdf/meta.yaml
+++ b/recipes/bioconductor-ricecdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "ricecdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 51db6f51f4adcfb7f4940d07668db8b8
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ricecdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-riceprobe/meta.yaml b/recipes/bioconductor-riceprobe/meta.yaml
index 63f1d8d7cf35c..297a6847aeceb 100644
--- a/recipes/bioconductor-riceprobe/meta.yaml
+++ b/recipes/bioconductor-riceprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "riceprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 2fac7746c343546cf30e6d54bc1e2019
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-riceprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rifi/meta.yaml b/recipes/bioconductor-rifi/meta.yaml
index 374b3a83ddb43..05ed25ea6941c 100644
--- a/recipes/bioconductor-rifi/meta.yaml
+++ b/recipes/bioconductor-rifi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.1" %}
+{% set version = "1.6.0" %}
 {% set name = "rifi" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 40bcaaa842e5f3d40b4da6e31ac73996
+  md5: 5d070b26ca40e04e4e3f9851853caa48
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rifi", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DescTools, devtools, knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-car
     - r-cowplot
@@ -40,9 +41,9 @@ requirements:
     - r-stringr
     - r-tibble
   run:
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-car
     - r-cowplot
diff --git a/recipes/bioconductor-rificomparative/meta.yaml b/recipes/bioconductor-rificomparative/meta.yaml
index f4846e577662c..fd8f33a8cb823 100644
--- a/recipes/bioconductor-rificomparative/meta.yaml
+++ b/recipes/bioconductor-rificomparative/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.1" %}
+{% set version = "1.2.0" %}
 {% set name = "rifiComparative" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e82d286dbce65abb273d2c7107d0ed87
+  md5: d371dc0f2b156f4565b09b7cfa5406e0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rificomparative", max_pin="x.x") }}'
   noarch: generic
-# Suggests: DescTools, devtools, knitr, rmarkdown, BiocStyle
+# Suggests: DescTools, knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-dta >=2.46.0,<2.47.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-dta >=2.48.0,<2.49.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cowplot
     - r-devtools
@@ -43,10 +44,10 @@ requirements:
     - r-tibble
     - r-writexl
   run:
-    - 'bioconductor-dta >=2.46.0,<2.47.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-dta >=2.48.0,<2.49.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cowplot
     - r-devtools
@@ -70,7 +71,7 @@ test:
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: 'GPL-3 + file LICENSE'
-  summary: '''rifiComparative'' compares the outputs of ''rifi'' under two different conditions.'
-  description: '''rifiComparative'' is an extension of the ''rifi'' package. It is designed to compare the outputs of ''rifi'' under two different conditions by utilizing the half-life and mRNA at time 0 segments. To perform the segmentation, it takes into account the difference in half-life between the two conditions and the log2FC (fold change) of the mRNA at time 0. This package offers various functionalities such as segmentation, statistical analysis, summary tables, visualization of fragments, and additional plots that can be helpful for further analysis.'
+  summary: '''rifiComparative'' compares the output of rifi from two different conditions.'
+  description: '''rifiComparative'' is a continuation of rifi package. It compares two conditions output of rifi using half-life and mRNA at time 0 segments. As an input for the segmentation, the difference between half-life of both condtions and log2FC of the mRNA at time 0 are used. The package provides segmentation, statistics, summary table, fragments visualization and some additional useful plots for further anaylsis.'
   license_file: LICENSE
 
diff --git a/recipes/bioconductor-rimmport/meta.yaml b/recipes/bioconductor-rimmport/meta.yaml
index 9c9a4be1b3071..b64ed9ed2061d 100644
--- a/recipes/bioconductor-rimmport/meta.yaml
+++ b/recipes/bioconductor-rimmport/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "RImmPort" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4586b7b4e16bfbfe7437943b0f33b892
+  md5: 9a35da0a38439eee55d04ff8321ff09d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rimmport", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
diff --git a/recipes/bioconductor-ringo/meta.yaml b/recipes/bioconductor-ringo/meta.yaml
index 8120d86801dc5..a2308eca149c4 100644
--- a/recipes/bioconductor-ringo/meta.yaml
+++ b/recipes/bioconductor-ringo/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.64.0" %}
+{% set version = "1.66.0" %}
 {% set name = "Ringo" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 091ac77889415d4c7f2a018c2aef8ffd
+  md5: 2aa9ffb65c3d24fed5141f139f8721ab
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ringo", max_pin="x.x") }}'
 # Suggests: rtracklayer (>= 1.3.1), mclust, topGO (>= 1.15.0)
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-base
     - r-lattice
     - r-matrix
@@ -32,11 +33,11 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-base
     - r-lattice
     - r-matrix
diff --git a/recipes/bioconductor-risa/meta.yaml b/recipes/bioconductor-risa/meta.yaml
index f7c42e97b03be..f7e20d8c31a4e 100644
--- a/recipes/bioconductor-risa/meta.yaml
+++ b/recipes/bioconductor-risa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "Risa" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ba3487e592132bda3e87cb245b057fb1
+  md5: 3d0fb12044023bc34defac509b8b4ab6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-risa", max_pin="x.x") }}'
 # Suggests: faahKO (>= 1.2.11)
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocviews >=1.68.0,<1.69.0'
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocviews >=1.70.0,<1.71.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-base
     - 'r-rcpp >=0.9.13'
     - libblas
     - liblapack
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocviews >=1.68.0,<1.69.0'
-    - 'bioconductor-xcms >=3.22.0,<3.23.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocviews >=1.70.0,<1.71.0'
+    - 'bioconductor-xcms >=4.0.0,<4.1.0'
     - r-base
     - 'r-rcpp >=0.9.13'
   build:
diff --git a/recipes/bioconductor-ritan/meta.yaml b/recipes/bioconductor-ritan/meta.yaml
index e4ce931394e66..3b41d1b6ab646 100644
--- a/recipes/bioconductor-ritan/meta.yaml
+++ b/recipes/bioconductor-ritan/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "RITAN" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3aada1fd1d9ff040f43ff6fd6e8be55d
+  md5: d9b8cf771e70cd374ba72e63aa439865
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ritan", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, BgeeDB
 requirements:
   host:
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-bgeedb >=2.26.0,<2.27.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-bgeedb >=2.28.0,<2.29.0'
     - 'bioconductor-ensdb.hsapiens.v86 >=2.99.0,<2.100.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-ritandata >=1.24.0,<1.25.0'
-    - 'bioconductor-stringdb >=2.12.0,<2.13.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-ritandata >=1.26.0,<1.27.0'
+    - 'bioconductor-stringdb >=2.14.0,<2.15.0'
     - r-base
     - r-dynamictreecut
     - r-ggplot2
@@ -45,13 +46,13 @@ requirements:
     - r-reshape2
     - r-sqldf
   run:
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-bgeedb >=2.26.0,<2.27.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-bgeedb >=2.28.0,<2.29.0'
     - 'bioconductor-ensdb.hsapiens.v86 >=2.99.0,<2.100.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-ritandata >=1.24.0,<1.25.0'
-    - 'bioconductor-stringdb >=2.12.0,<2.13.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-ritandata >=1.26.0,<1.27.0'
+    - 'bioconductor-stringdb >=2.14.0,<2.15.0'
     - r-base
     - r-dynamictreecut
     - r-ggplot2
diff --git a/recipes/bioconductor-ritandata/meta.yaml b/recipes/bioconductor-ritandata/meta.yaml
index 1204ac1b5ac42..5ca38c3c23f92 100644
--- a/recipes/bioconductor-ritandata/meta.yaml
+++ b/recipes/bioconductor-ritandata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "RITANdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ee9657a5c821eb892c79ef6a1ee4c5e5
+  md5: 12987879ef374ad399dd440a058b9a47
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ritandata", max_pin="x.x") }}'
   noarch: generic
+# Suggests: knitr
 requirements:
   host:
     - r-base
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/html/{{ name }}.html'
   license: 'file LICENSE'
-  summary: 'This package contains the annotation and network data sets'
-  description: 'Data such as is contained in these two R data files in this package are required for the RITAN package examples. Users may use their own or additional resources in conjunction with RITANdata. See the RITAN vignettes for more information, such as gathering more up-to-date annotation data.'
+  summary: 'This package contains reference annotation and network data sets'
+  description: 'Data such as is contained in the two R data files in this package are required for the RITAN package examples. Users are highly encouraged to use their own or additional resources in conjunction with RITANdata. See the RITAN vignettes and RITAN.md for more information, such as gathering more up-to-date annotation data.'
   license_file: LICENSE
 
diff --git a/recipes/bioconductor-ritandata/post-link.sh b/recipes/bioconductor-ritandata/post-link.sh
index 2f95569f41478..41e2751e05e13 100644
--- a/recipes/bioconductor-ritandata/post-link.sh
+++ b/recipes/bioconductor-ritandata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "ritandata-1.24.0"
+installBiocDataPackage.sh "ritandata-1.26.0"
diff --git a/recipes/bioconductor-river/meta.yaml b/recipes/bioconductor-river/meta.yaml
index 1f09b68b21b10..cf84189dac66b 100644
--- a/recipes/bioconductor-river/meta.yaml
+++ b/recipes/bioconductor-river/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "RIVER" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ea28b47a8fe878e4abf8e3cf1b673037
+  md5: 7b8f82011a163ae4f4a31f2172d49124
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-river", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, devtools
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-ggplot2
     - r-glmnet
     - r-proc
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-ggplot2
     - r-glmnet
diff --git a/recipes/bioconductor-rjmcmcnucleosomes/meta.yaml b/recipes/bioconductor-rjmcmcnucleosomes/meta.yaml
index 8300621962a83..4c214aee9eaf1 100644
--- a/recipes/bioconductor-rjmcmcnucleosomes/meta.yaml
+++ b/recipes/bioconductor-rjmcmcnucleosomes/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "RJMCMCNucleosomes" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,37 +11,40 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f88945884d72fdd6ee15d6008afc07a5
+  md5: cec0a46571d187963e019f18fff144f1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rjmcmcnucleosomes", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, rmarkdown, nucleoSim, RUnit
-# SystemRequirements: Rcpp
+# SystemRequirements: Rcpp, gsl
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-consensusseeker >=1.28.0,<1.29.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-consensusseeker >=1.30.0,<1.31.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-rcpp >=0.12.5'
     - libblas
     - liblapack
+    - gsl
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-consensusseeker >=1.28.0,<1.29.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-consensusseeker >=1.30.0,<1.31.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-rcpp >=0.12.5'
+    - gsl
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
@@ -54,4 +57,3 @@ about:
   license: Artistic-2.0
   summary: 'Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-read data (MNase-Seq)'
   description: 'This package does nucleosome positioning using informative Multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling.'
-
diff --git a/recipes/bioconductor-rlassocox/meta.yaml b/recipes/bioconductor-rlassocox/meta.yaml
index 7a9ab1a25b16f..18539199c38bb 100644
--- a/recipes/bioconductor-rlassocox/meta.yaml
+++ b/recipes/bioconductor-rlassocox/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "RLassoCox" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8cc79742a37f2121756c4ac8897025a4
+  md5: 3f92bc442df2edc28546415bc716123b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rlassocox", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
diff --git a/recipes/bioconductor-rlhub/meta.yaml b/recipes/bioconductor-rlhub/meta.yaml
index d176101ac3623..9001fbc96cb20 100644
--- a/recipes/bioconductor-rlhub/meta.yaml
+++ b/recipes/bioconductor-rlhub/meta.yaml
@@ -29,7 +29,7 @@ requirements:
     - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - bioconductor-data-packages >=20230706
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rlmm/meta.yaml b/recipes/bioconductor-rlmm/meta.yaml
index fc040d60e4170..f42b4445d98c7 100644
--- a/recipes/bioconductor-rlmm/meta.yaml
+++ b/recipes/bioconductor-rlmm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.62.0" %}
+{% set version = "1.64.0" %}
 {% set name = "RLMM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4f30cfdb4cb3043dc8dfd8018b7850ab
+  md5: 7c43c967fab2a5e90059b26e46de345b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rlmm", max_pin="x.x") }}'
   noarch: generic
 # SystemRequirements: Internal files Xba.CQV, Xba.regions (or other regions file)
 requirements:
diff --git a/recipes/bioconductor-rlseq/build_failure.linux-64.yaml b/recipes/bioconductor-rlseq/build_failure.linux-64.yaml
new file mode 100644
index 0000000000000..b874c0e162bfb
--- /dev/null
+++ b/recipes/bioconductor-rlseq/build_failure.linux-64.yaml
@@ -0,0 +1,108 @@
+recipe_sha: b7a51b994b018dcebdb6ac934d67a24cdfdf07103b98b0c4084cfbaab5d97155  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+reason: |-
+  bioconductor-rlhub is stuck at BioC 3.17 because of a build error on their side
+category: |-
+  dependency issue
+log: |2-
+   - bioconductor-regioner >=1.34.0,<1.35.0
+   - bioconductor-annotationhub >=3.10.0,<3.11.0
+   - bioconductor-genomeinfodb >=1.38.0,<1.39.0
+
+  with channels:
+   - file:///opt/host-conda-bld
+   - conda-forge
+   - bioconda
+   - defaults
+
+  The reported errors are:
+  - Encountered problems while solving:
+  -   - nothing provides requested bioconductor-rlhub >=1.8.0,<1.9.0
+  -
+
+  Leaving build/test directories:
+    Work:
+   /opt/conda/conda-bld/work
+    Test:
+   /opt/conda/conda-bld/test_tmp
+  Leaving build/test environments:
+    Test:
+  source activate  /opt/conda/conda-bld/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl
+    Build:
+  source activate  /opt/conda/conda-bld/_build_env
+
+
+  Traceback (most recent call last):
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 141, in mamba_get_install_actions
+      solution = solver.solve_for_action(_specs, prefix)
+    File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 244, in solve_for_action
+      t = self.solve(specs)
+    File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 234, in solve
+      raise RuntimeError("Solver could not find solution."  error_string)
+  RuntimeError: Solver could not find solution.Mamba failed to solve:
+   - r-callr
+   - bioconductor-complexheatmap >=2.18.0,<2.19.0
+   - bioconductor-genomicfeatures >=1.54.0,<1.55.0
+   - r-aws.s3
+   - r-ggplotify
+   - r-rcolorbrewer
+   - r-valr
+   - r-caretensemble
+   - bioconductor-rtracklayer >=1.62.0,<1.63.0
+   - r-venndiagram
+   - r-ggprism
+   - r-circlize
+   - bioconductor-rlhub >=1.8.0,<1.9.0
+   - r-base 4.3.*
+   - r-ggplot2
+   - r-dplyr
+   - bioconductor-genomicranges >=1.54.0,<1.55.0
+   - r-pheatmap
+   - bioconductor-regioner >=1.34.0,<1.35.0
+   - bioconductor-annotationhub >=3.10.0,<3.11.0
+   - bioconductor-genomeinfodb >=1.38.0,<1.39.0
+
+  with channels:
+   - file:///opt/host-conda-bld
+   - conda-forge
+   - bioconda
+   - defaults
+
+  The reported errors are:
+  - Encountered problems while solving:
+  -   - nothing provides requested bioconductor-rlhub >=1.8.0,<1.9.0
+  -
+
+  During handling of the above exception, another exception occurred:
+
+  Traceback (most recent call last):
+    File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
+      sys.exit(main())
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
+      call_conda_build(action, config)
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
+      result = api.build(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
+      return build_tree(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
+      packages_from_this = build(metadata, stats,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2038, in build
+      output_metas = expand_outputs([(m, need_source_download, need_reparse_in_env)])
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 787, in expand_outputs
+      for (output_dict, m) in deepcopy(_m).get_output_metadata_set(permit_unsatisfiable_variants=False):
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/metadata.py", line 2524, in get_output_metadata_set
+      conda_packages = finalize_outputs_pass(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/metadata.py", line 884, in finalize_outputs_pass
+      fm = finalize_metadata(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 547, in finalize_metadata
+      build_unsat, host_unsat = add_upstream_pins(m,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 409, in add_upstream_pins
+      host_deps, host_unsat, extra_run_specs_from_host = _read_upstream_pin_files(m, 'host',
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 374, in _read_upstream_pin_files
+      deps, actions, unsat = get_env_dependencies(m, env, m.config.variant,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 131, in get_env_dependencies
+      actions = environ.get_install_actions(tmpdir, tuple(dependencies), env,
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 150, in mamba_get_install_actions
+      raise err
+  conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("bioconductor-rlhub[version='>=1.8.0,<1.9.0']")}
+# Last 100 lines of the build log.
diff --git a/recipes/bioconductor-rlseq/meta.yaml b/recipes/bioconductor-rlseq/meta.yaml
index 539401a044180..3bdc73c481a19 100644
--- a/recipes/bioconductor-rlseq/meta.yaml
+++ b/recipes/bioconductor-rlseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.5.2" %}
 {% set name = "RLSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 11778a7b1e74c4332c8e5db472e3443d
+  md5: fefe852714378d866e0209fbe48fcf21
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rlseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: AnnotationDbi, BiocStyle, covr, lintr, rcmdcheck, DT, httr, jsonlite, kableExtra, kernlab, knitr, magick, MASS, org.Hs.eg.db, R.utils, randomForest, readr, rmarkdown, rpart, testthat (>= 3.0.0), tibble, tidyr, TxDb.Hsapiens.UCSC.hg19.knownGene, futile.logger
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-regioner >=1.32.0,<1.33.0'
-    - 'bioconductor-rlhub >=1.6.0,<1.7.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-regioner >=1.34.0,<1.35.0'
+    - 'bioconductor-rlhub >=1.8.0,<1.9.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-aws.s3
     - r-base
     - r-callr
@@ -43,14 +44,14 @@ requirements:
     - r-valr
     - r-venndiagram
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-regioner >=1.32.0,<1.33.0'
-    - 'bioconductor-rlhub >=1.6.0,<1.7.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-regioner >=1.34.0,<1.35.0'
+    - 'bioconductor-rlhub >=1.8.0,<1.9.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-aws.s3
     - r-base
     - r-callr
diff --git a/recipes/bioconductor-rmagpie/meta.yaml b/recipes/bioconductor-rmagpie/meta.yaml
index e9c9eae1d81c7..dbd9d4ffce38e 100644
--- a/recipes/bioconductor-rmagpie/meta.yaml
+++ b/recipes/bioconductor-rmagpie/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.56.0" %}
+{% set version = "1.58.0" %}
 {% set name = "Rmagpie" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 468886302bd604ea3fab549eebd6554a
+  md5: 939fbdcb38d890daf9880baea89c8685
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rmagpie", max_pin="x.x") }}'
   noarch: generic
 # Suggests: xtable
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-e1071
     - r-kernlab
     - r-pamr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-e1071
     - r-kernlab
diff --git a/recipes/bioconductor-rmassbank/meta.yaml b/recipes/bioconductor-rmassbank/meta.yaml
index b21127ce6a9f3..b45501cfdd4e3 100644
--- a/recipes/bioconductor-rmassbank/meta.yaml
+++ b/recipes/bioconductor-rmassbank/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.10.0" %}
+{% set version = "3.12.0" %}
 {% set name = "RMassBank" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6d1f67c8b225b67387d68ace4243102d
+  md5: 59330cd723448b79eb751c6864e3dfbf
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rmassbank", max_pin="x.x") }}'
 # Suggests: BiocStyle,gplots,RMassBankData (>= 1.33.1), xcms (>= 1.37.1), CAMERA, RUnit, knitr, rmarkdown
 # SystemRequirements: OpenBabel
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-chemmineob >=1.38.0,<1.39.0'
-    - 'bioconductor-chemminer >=3.52.0,<3.53.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-chemmineob >=1.40.0,<1.41.0'
+    - 'bioconductor-chemminer >=3.54.0,<3.55.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-assertthat
     - r-base
     - r-data.table
     - r-digest
     - r-envipat
+    - r-glue
     - r-httr
     - r-logger
     - r-r.utils
     - r-rcdk
     - r-rcpp
-    - r-rcurl
     - r-readjdx
     - r-rjson
     - r-webchem
@@ -47,23 +48,23 @@ requirements:
     - liblapack
     - openbabel
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-chemmineob >=1.38.0,<1.39.0'
-    - 'bioconductor-chemminer >=3.52.0,<3.53.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-chemmineob >=1.40.0,<1.41.0'
+    - 'bioconductor-chemminer >=3.54.0,<3.55.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-assertthat
     - r-base
     - r-data.table
     - r-digest
     - r-envipat
+    - r-glue
     - r-httr
     - r-logger
     - r-r.utils
     - r-rcdk
     - r-rcpp
-    - r-rcurl
     - r-readjdx
     - r-rjson
     - r-webchem
diff --git a/recipes/bioconductor-rmassbankdata/meta.yaml b/recipes/bioconductor-rmassbankdata/meta.yaml
index c0e415f6acd0f..add2a5313260a 100644
--- a/recipes/bioconductor-rmassbankdata/meta.yaml
+++ b/recipes/bioconductor-rmassbankdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "RMassBankData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ea11a54b5f2465431c43bb8edde6a112
+  md5: ac6f883e962890eebb03c2368be8bcdc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rmassbankdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RMassBank
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rmassbankdata/post-link.sh b/recipes/bioconductor-rmassbankdata/post-link.sh
index 3a9811ab26de7..fa1e79222fceb 100644
--- a/recipes/bioconductor-rmassbankdata/post-link.sh
+++ b/recipes/bioconductor-rmassbankdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rmassbankdata-1.38.0"
+installBiocDataPackage.sh "rmassbankdata-1.40.0"
diff --git a/recipes/bioconductor-rmelting/meta.yaml b/recipes/bioconductor-rmelting/meta.yaml
index 94265e7c9ff25..d3b27ada7ef61 100644
--- a/recipes/bioconductor-rmelting/meta.yaml
+++ b/recipes/bioconductor-rmelting/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "rmelting" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 42f9700727064207960dab9d71653652
+  md5: a73d7dd41b3d77dce067644b04412e9d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rmelting", max_pin="x.x") }}'
   noarch: generic
 # Suggests: readxl, knitr, rmarkdown, reshape2, pander, testthat
 # SystemRequirements: Java
diff --git a/recipes/bioconductor-rmir.hs.mirna/meta.yaml b/recipes/bioconductor-rmir.hs.mirna/meta.yaml
index 12100652f5496..f38de5714e0ba 100644
--- a/recipes/bioconductor-rmir.hs.mirna/meta.yaml
+++ b/recipes/bioconductor-rmir.hs.mirna/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.7" %}
 {% set name = "RmiR.Hs.miRNA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 4aedac188382447d9907d2617aa2e8e6
 build:
-  number: 14
+  number: 15
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rmir.hs.mirna", max_pin="x.x") }}'
   noarch: generic
 # Suggests: methods, hgug4112a.db
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rmir.hsa/meta.yaml b/recipes/bioconductor-rmir.hsa/meta.yaml
index 09617d6a7c380..0f5eb625023cc 100644
--- a/recipes/bioconductor-rmir.hsa/meta.yaml
+++ b/recipes/bioconductor-rmir.hsa/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.5" %}
 {% set name = "RmiR.hsa" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: f22a18d1a34d12f8fc4ba3daaf1379fd
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rmir.hsa", max_pin="x.x") }}'
   noarch: generic
 # Suggests: methods, hgug4112a.db
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rmmquant/meta.yaml b/recipes/bioconductor-rmmquant/meta.yaml
index 938579ddf4d18..5091be475916f 100644
--- a/recipes/bioconductor-rmmquant/meta.yaml
+++ b/recipes/bioconductor-rmmquant/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "Rmmquant" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e67a9d31d1acf84a37e1edc3c778d432
+  md5: 8f12574d12fdfbb3ef7407666fb22a7b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rmmquant", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, testthat
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-apeglm >=1.22.0,<1.23.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tbx20bamsubset >=1.36.0,<1.37.0'
+    - 'bioconductor-apeglm >=1.24.0,<1.25.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tbx20bamsubset >=1.38.0,<1.39.0'
     - 'bioconductor-txdb.mmusculus.ucsc.mm9.knowngene >=3.2.0,<3.3.0'
     - r-base
     - r-devtools
@@ -36,14 +37,14 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-apeglm >=1.22.0,<1.23.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tbx20bamsubset >=1.36.0,<1.37.0'
+    - 'bioconductor-apeglm >=1.24.0,<1.25.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tbx20bamsubset >=1.38.0,<1.39.0'
     - 'bioconductor-txdb.mmusculus.ucsc.mm9.knowngene >=3.2.0,<3.3.0'
     - r-base
     - r-devtools
diff --git a/recipes/bioconductor-rmspc/meta.yaml b/recipes/bioconductor-rmspc/meta.yaml
index 4709a931c1529..58eec5b7e1658 100644
--- a/recipes/bioconductor-rmspc/meta.yaml
+++ b/recipes/bioconductor-rmspc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "rmspc" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 7f21760a50ad227a597419cc10c26f10
+  md5: fd5ce900bcff0c0a4b4423a7cc261aec
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rmspc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0)
 # SystemRequirements: .NET 6.0
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-biocmanager
     - r-processx
     - r-stringr
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-biocmanager
     - r-processx
diff --git a/recipes/bioconductor-rnaagecalc/meta.yaml b/recipes/bioconductor-rnaagecalc/meta.yaml
index d0b26aa2751a5..dee8249e03b08 100644
--- a/recipes/bioconductor-rnaagecalc/meta.yaml
+++ b/recipes/bioconductor-rnaagecalc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "RNAAgeCalc" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 467f0ca987822c00d042b03c1c7fe382
+  md5: 8601edc9bd38ec2387cd9cd9a78b0da8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnaagecalc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-recount >=1.26.0,<1.27.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-recount >=1.28.0,<1.29.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-recount >=1.26.0,<1.27.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-recount >=1.28.0,<1.29.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
 test:
diff --git a/recipes/bioconductor-rnaeditr/meta.yaml b/recipes/bioconductor-rnaeditr/meta.yaml
index a9c58c91a11ba..cbbbde1bbbebf 100644
--- a/recipes/bioconductor-rnaeditr/meta.yaml
+++ b/recipes/bioconductor-rnaeditr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "rnaEditr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 47abbe2ca055d268e3c5a03635549268
+  md5: fb5365c7d12dcdc26838f4824e70a00d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnaeditr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bumphunter >=1.42.0,<1.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bumphunter >=1.44.0,<1.45.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-corrplot
     - r-logistf
     - r-plyr
     - r-survival
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bumphunter >=1.42.0,<1.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bumphunter >=1.44.0,<1.45.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-corrplot
     - r-logistf
diff --git a/recipes/bioconductor-rnagilentdesign028282.db/meta.yaml b/recipes/bioconductor-rnagilentdesign028282.db/meta.yaml
index 05f72360ba0f3..3fae561ac4294 100644
--- a/recipes/bioconductor-rnagilentdesign028282.db/meta.yaml
+++ b/recipes/bioconductor-rnagilentdesign028282.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "RnAgilentDesign028282.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 72cafb0f7514a81f462acb3248e21aa9
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnagilentdesign028282.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rnainteract/meta.yaml b/recipes/bioconductor-rnainteract/meta.yaml
index 6a6592e48526e..a1bd4cfd25c05 100644
--- a/recipes/bioconductor-rnainteract/meta.yaml
+++ b/recipes/bioconductor-rnainteract/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "RNAinteract" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b789fe4d04a6fba019a3aaf8ff61646b
+  md5: 571d13067f2afebde4247de5571e1086
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnainteract", max_pin="x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-cellhts2 >=2.64.0,<2.65.0'
-    - 'bioconductor-geneplotter >=1.78.0,<1.79.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-splots >=1.66.0,<1.67.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-cellhts2 >=2.66.0,<2.67.0'
+    - 'bioconductor-geneplotter >=1.80.0,<1.81.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-splots >=1.68.0,<1.69.0'
     - r-abind
     - r-base
     - r-gplots
@@ -36,11 +37,11 @@ requirements:
     - r-locfit
     - r-rcolorbrewer
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-cellhts2 >=2.64.0,<2.65.0'
-    - 'bioconductor-geneplotter >=1.78.0,<1.79.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-splots >=1.66.0,<1.67.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-cellhts2 >=2.66.0,<2.67.0'
+    - 'bioconductor-geneplotter >=1.80.0,<1.81.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-splots >=1.68.0,<1.69.0'
     - r-abind
     - r-base
     - r-gplots
diff --git a/recipes/bioconductor-rnainteractmapk/meta.yaml b/recipes/bioconductor-rnainteractmapk/meta.yaml
index e34bf3486e80c..47e1b53a2be90 100644
--- a/recipes/bioconductor-rnainteractmapk/meta.yaml
+++ b/recipes/bioconductor-rnainteractmapk/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "RNAinteractMAPK" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ed5fd6239416fbacc80a8995c6e13fb7
+  md5: c60bb748ed7dc37d409f5dde69354074
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnainteractmapk", max_pin="x.x") }}'
   noarch: generic
 # Suggests: qvalue
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-rnainteract >=1.48.0,<1.49.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-rnainteract >=1.50.0,<1.51.0'
     - r-base
     - r-fields
     - r-gdata
@@ -31,9 +32,9 @@ requirements:
     - r-mass
     - r-sparselda
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-rnainteract >=1.48.0,<1.49.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-rnainteract >=1.50.0,<1.51.0'
     - r-base
     - r-fields
     - r-gdata
@@ -41,7 +42,7 @@ requirements:
     - r-mass
     - r-sparselda
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rnainteractmapk/post-link.sh b/recipes/bioconductor-rnainteractmapk/post-link.sh
index 9e394a3288ff2..d87f516db77a0 100644
--- a/recipes/bioconductor-rnainteractmapk/post-link.sh
+++ b/recipes/bioconductor-rnainteractmapk/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rnainteractmapk-1.38.0"
+installBiocDataPackage.sh "rnainteractmapk-1.40.0"
diff --git a/recipes/bioconductor-rnamodr.alkanilineseq/meta.yaml b/recipes/bioconductor-rnamodr.alkanilineseq/meta.yaml
index ab88f1c02fb0c..93407ca9b47f1 100644
--- a/recipes/bioconductor-rnamodr.alkanilineseq/meta.yaml
+++ b/recipes/bioconductor-rnamodr.alkanilineseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "RNAmodR.AlkAnilineSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: de1fd6898807bda24c85bea3b82ba655
+  md5: a8d93c4a0a55346a6d47edb5f4c4438e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnamodr.alkanilineseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, rtracklayer, Biostrings, RNAmodR.Data
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rnamodr >=1.14.0,<1.15.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rnamodr >=1.16.0,<1.17.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rnamodr >=1.14.0,<1.15.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rnamodr >=1.16.0,<1.17.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-rnamodr.data/meta.yaml b/recipes/bioconductor-rnamodr.data/meta.yaml
index 772d4123cb9ef..beb72c08bfd72 100644
--- a/recipes/bioconductor-rnamodr.data/meta.yaml
+++ b/recipes/bioconductor-rnamodr.data/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "RNAmodR.Data" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1299a93be9ed1090e5890741cebde152
+  md5: cd4851e2f0c0a93c6d5a9163f542b07f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnamodr.data", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, GenomicRanges, sessioninfo, testthat
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-experimenthubdata >=1.26.0,<1.27.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-experimenthubdata >=1.28.0,<1.29.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-experimenthubdata >=1.26.0,<1.27.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-experimenthubdata >=1.28.0,<1.29.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rnamodr.data/post-link.sh b/recipes/bioconductor-rnamodr.data/post-link.sh
index 35a51256142a0..7991a62b289cf 100644
--- a/recipes/bioconductor-rnamodr.data/post-link.sh
+++ b/recipes/bioconductor-rnamodr.data/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rnamodr.data-1.14.0"
+installBiocDataPackage.sh "rnamodr.data-1.16.0"
diff --git a/recipes/bioconductor-rnamodr.ml/meta.yaml b/recipes/bioconductor-rnamodr.ml/meta.yaml
index 95059b708a6c3..1508ede453dec 100644
--- a/recipes/bioconductor-rnamodr.ml/meta.yaml
+++ b/recipes/bioconductor-rnamodr.ml/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "RNAmodR.ML" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ef2e4335b21c319d46453cc8dd1dd2f4
+  md5: b82e119e7d8c2387b22f4b38d0985970
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnamodr.ml", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, RNAmodR.Data, RNAmodR.AlkAnilineSeq, GenomicFeatures, Rsamtools, rtracklayer, keras
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rnamodr >=1.14.0,<1.15.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rnamodr >=1.16.0,<1.17.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ranger
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rnamodr >=1.14.0,<1.15.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rnamodr >=1.16.0,<1.17.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ranger
 test:
diff --git a/recipes/bioconductor-rnamodr.ribomethseq/meta.yaml b/recipes/bioconductor-rnamodr.ribomethseq/meta.yaml
index 1e051d06e76b0..a6f3883a418a5 100644
--- a/recipes/bioconductor-rnamodr.ribomethseq/meta.yaml
+++ b/recipes/bioconductor-rnamodr.ribomethseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "RNAmodR.RiboMethSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8c10bb4524dada400d7e9e6fdb6fcafd
+  md5: fc22b6332a4e89e33ff8921d9e54aac7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnamodr.ribomethseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, rtracklayer, RNAmodR.Data
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rnamodr >=1.14.0,<1.15.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rnamodr >=1.16.0,<1.17.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rnamodr >=1.14.0,<1.15.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rnamodr >=1.16.0,<1.17.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-rnamodr/meta.yaml b/recipes/bioconductor-rnamodr/meta.yaml
index 9c834d67d273b..78ce0c695332d 100644
--- a/recipes/bioconductor-rnamodr/meta.yaml
+++ b/recipes/bioconductor-rnamodr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "RNAmodR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: abd9121f4f35d864be10cac6bf1c0d9c
+  md5: ece4ec8fc16a95ec2ee8d9506283c57e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnamodr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, RNAmodR.Data
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-modstrings >=1.16.0,<1.17.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-modstrings >=1.18.0,<1.19.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-colorramps
     - r-ggplot2
@@ -43,20 +44,20 @@ requirements:
     - r-reshape2
     - r-rocr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-modstrings >=1.16.0,<1.17.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-modstrings >=1.18.0,<1.19.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-colorramps
     - r-ggplot2
diff --git a/recipes/bioconductor-rnasense/meta.yaml b/recipes/bioconductor-rnasense/meta.yaml
index fd03499b2d792..f75925da2198c 100644
--- a/recipes/bioconductor-rnasense/meta.yaml
+++ b/recipes/bioconductor-rnasense/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "RNAsense" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b29a1e11b8c90a33aa7ad1885a81b458
+  md5: 514e6c09019b7f9116ddbedbdf514a5a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnasense", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-nbpseq
   run:
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-nbpseq
diff --git a/recipes/bioconductor-rnaseqcomp/meta.yaml b/recipes/bioconductor-rnaseqcomp/meta.yaml
index 1ae3f6bd5d654..874a5325d2799 100644
--- a/recipes/bioconductor-rnaseqcomp/meta.yaml
+++ b/recipes/bioconductor-rnaseqcomp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "rnaseqcomp" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 093b21b510a3c3dbe2652b8c97b10391
+  md5: 2d0e9f4dd34f6746ff48994f8067f6f6
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnaseqcomp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
diff --git a/recipes/bioconductor-rnaseqcovarimpute/build.sh b/recipes/bioconductor-rnaseqcovarimpute/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-rnaseqcovarimpute/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-rnaseqcovarimpute/meta.yaml b/recipes/bioconductor-rnaseqcovarimpute/meta.yaml
new file mode 100644
index 0000000000000..21a2e0ab62a71
--- /dev/null
+++ b/recipes/bioconductor-rnaseqcovarimpute/meta.yaml
@@ -0,0 +1,55 @@
+{% set version = "1.0.2" %}
+{% set name = "RNAseqCovarImpute" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 17d14273ae359562d3f0cbf1c45b10a7
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnaseqcovarimpute", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, knitr, rmarkdown, tidyr, stringr, testthat (>= 3.0.0)
+requirements:
+  host:
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - r-base
+    - r-dplyr
+    - r-foreach
+    - r-magrittr
+    - r-mice
+    - r-rlang
+  run:
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - r-base
+    - r-dplyr
+    - r-foreach
+    - r-magrittr
+    - r-mice
+    - r-rlang
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'Impute Covariate Data in RNA Sequencing Studies'
+  description: 'The RNAseqCovarImpute package implements multiple imputation of missing covariates and differential gene expression analysis by: 1) Randomly binning genes into smaller groups, 2) Creating M imputed datasets separately within each bin, where the imputation predictor matrix includes all covariates and the log counts per million (CPM) for the genes within each bin, 3) Estimating gene expression changes using voom followed by lmFit functions, separately on each M imputed dataset within each gene bin, 4) Un-binning the gene sets and stacking the M sets of model results before applying the squeezeVar function to apply a variance shrinking Bayesian procedure to each M set of model results, 5) Pooling the results with Rubins’ rules to produce combined coefficients, standard errors, and P-values, and 6) Adjusting P-values for multiplicity to account for false discovery rate (FDR).'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-rnaseqdata.hnrnpc.bam.chr14/meta.yaml b/recipes/bioconductor-rnaseqdata.hnrnpc.bam.chr14/meta.yaml
index 8c3c00c1f2177..b3e826c19752f 100644
--- a/recipes/bioconductor-rnaseqdata.hnrnpc.bam.chr14/meta.yaml
+++ b/recipes/bioconductor-rnaseqdata.hnrnpc.bam.chr14/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.38.0" %}
+{% set version = "0.40.0" %}
 {% set name = "RNAseqData.HNRNPC.bam.chr14" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7c39f3f2306bb10cb47a97b1d2c893ad
+  md5: 9bfb7faf3c8770b15f3cf15bb670162d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnaseqdata.hnrnpc.bam.chr14", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicAlignments, BiocManager
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rnaseqdata.hnrnpc.bam.chr14/post-link.sh b/recipes/bioconductor-rnaseqdata.hnrnpc.bam.chr14/post-link.sh
index 0e253883cfc15..02be065d14f92 100644
--- a/recipes/bioconductor-rnaseqdata.hnrnpc.bam.chr14/post-link.sh
+++ b/recipes/bioconductor-rnaseqdata.hnrnpc.bam.chr14/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rnaseqdata.hnrnpc.bam.chr14-0.38.0"
+installBiocDataPackage.sh "rnaseqdata.hnrnpc.bam.chr14-0.40.0"
diff --git a/recipes/bioconductor-rnaseqpower/meta.yaml b/recipes/bioconductor-rnaseqpower/meta.yaml
index eb6b3310173ed..50beb5be190ca 100644
--- a/recipes/bioconductor-rnaseqpower/meta.yaml
+++ b/recipes/bioconductor-rnaseqpower/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "RNASeqPower" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8ed9fb060724ab44d75be435f10eceeb
+  md5: 38da142eb3ee64f2e7684ead27e4520f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnaseqpower", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-rnaseqsamplesize/meta.yaml b/recipes/bioconductor-rnaseqsamplesize/meta.yaml
index 4fc692cb5bd46..470e4efabe95e 100644
--- a/recipes/bioconductor-rnaseqsamplesize/meta.yaml
+++ b/recipes/bioconductor-rnaseqsamplesize/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.10.0" %}
+{% set version = "2.12.0" %}
 {% set name = "RnaSeqSampleSize" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 99e670bb27777288f4c42bdb45964a89
+  md5: faa40e62b53c345d9298c32310e6488c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnaseqsamplesize", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, testthat
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-recount >=1.26.0,<1.27.0'
-    - 'bioconductor-rnaseqsamplesizedata >=1.32.0,<1.33.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-recount >=1.28.0,<1.29.0'
+    - 'bioconductor-rnaseqsamplesizedata >=1.34.0,<1.35.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -38,12 +39,12 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-recount >=1.26.0,<1.27.0'
-    - 'bioconductor-rnaseqsamplesizedata >=1.32.0,<1.33.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-recount >=1.28.0,<1.29.0'
+    - 'bioconductor-rnaseqsamplesizedata >=1.34.0,<1.35.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-rnaseqsamplesizedata/meta.yaml b/recipes/bioconductor-rnaseqsamplesizedata/meta.yaml
index 8fd742f290e66..d6d8fc2ab7470 100644
--- a/recipes/bioconductor-rnaseqsamplesizedata/meta.yaml
+++ b/recipes/bioconductor-rnaseqsamplesizedata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "RnaSeqSampleSizeData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 415e0dc4f463089c632c9106f6df7d89
+  md5: a4edc47422b0be1d83521282c0599440
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnaseqsamplesizedata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr
 requirements:
   host:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
     - r-base
   run:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rnaseqsamplesizedata/post-link.sh b/recipes/bioconductor-rnaseqsamplesizedata/post-link.sh
index 538ec6640b572..0b665148a7ee6 100644
--- a/recipes/bioconductor-rnaseqsamplesizedata/post-link.sh
+++ b/recipes/bioconductor-rnaseqsamplesizedata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rnaseqsamplesizedata-1.32.0"
+installBiocDataPackage.sh "rnaseqsamplesizedata-1.34.0"
diff --git a/recipes/bioconductor-rnbeads.hg19/meta.yaml b/recipes/bioconductor-rnbeads.hg19/meta.yaml
index 0287d73aa353c..f712559b76362 100644
--- a/recipes/bioconductor-rnbeads.hg19/meta.yaml
+++ b/recipes/bioconductor-rnbeads.hg19/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "RnBeads.hg19" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 83a4f81f4c411d8139ba8673687a6a49
+  md5: 92612251679ba9c6d2b88b90838edf1c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnbeads.hg19", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RnBeads
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rnbeads.hg19/post-link.sh b/recipes/bioconductor-rnbeads.hg19/post-link.sh
index a2dd13d8a0453..b7529eae02133 100644
--- a/recipes/bioconductor-rnbeads.hg19/post-link.sh
+++ b/recipes/bioconductor-rnbeads.hg19/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rnbeads.hg19-1.32.0"
+installBiocDataPackage.sh "rnbeads.hg19-1.34.0"
diff --git a/recipes/bioconductor-rnbeads.hg38/meta.yaml b/recipes/bioconductor-rnbeads.hg38/meta.yaml
index 33af85fcb32ac..8baae260b3c7f 100644
--- a/recipes/bioconductor-rnbeads.hg38/meta.yaml
+++ b/recipes/bioconductor-rnbeads.hg38/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "RnBeads.hg38" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 87b5a33c515443e05b5ab7cfeb7afa7a
+  md5: 44dd2d3ae3703e045016a34060a14b0a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnbeads.hg38", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RnBeads
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rnbeads.hg38/post-link.sh b/recipes/bioconductor-rnbeads.hg38/post-link.sh
index 240286b0e5169..7752ddaad438f 100644
--- a/recipes/bioconductor-rnbeads.hg38/post-link.sh
+++ b/recipes/bioconductor-rnbeads.hg38/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rnbeads.hg38-1.32.0"
+installBiocDataPackage.sh "rnbeads.hg38-1.34.0"
diff --git a/recipes/bioconductor-rnbeads.mm10/meta.yaml b/recipes/bioconductor-rnbeads.mm10/meta.yaml
index 32cb33a408c62..6b68058cd1575 100644
--- a/recipes/bioconductor-rnbeads.mm10/meta.yaml
+++ b/recipes/bioconductor-rnbeads.mm10/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.8.0" %}
+{% set version = "2.10.0" %}
 {% set name = "RnBeads.mm10" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4b25dd4978d2d430192ae93b45945506
+  md5: 0c935572ce46183bc5a7aaea31ea2519
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnbeads.mm10", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RnBeads
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rnbeads.mm10/post-link.sh b/recipes/bioconductor-rnbeads.mm10/post-link.sh
index 8e68b5fa38fc2..f7a47eac3384f 100644
--- a/recipes/bioconductor-rnbeads.mm10/post-link.sh
+++ b/recipes/bioconductor-rnbeads.mm10/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rnbeads.mm10-2.8.0"
+installBiocDataPackage.sh "rnbeads.mm10-2.10.0"
diff --git a/recipes/bioconductor-rnbeads.mm9/meta.yaml b/recipes/bioconductor-rnbeads.mm9/meta.yaml
index c117153200f26..0788e300ed3ab 100644
--- a/recipes/bioconductor-rnbeads.mm9/meta.yaml
+++ b/recipes/bioconductor-rnbeads.mm9/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "RnBeads.mm9" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 83951bafa8f84863f5cdd3e0128c1e0d
+  md5: 76f271051b1c542e5ac0da492777f933
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnbeads.mm9", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RnBeads
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rnbeads.mm9/post-link.sh b/recipes/bioconductor-rnbeads.mm9/post-link.sh
index aea69f9cb33bb..6831e4e1b6ab5 100644
--- a/recipes/bioconductor-rnbeads.mm9/post-link.sh
+++ b/recipes/bioconductor-rnbeads.mm9/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rnbeads.mm9-1.32.0"
+installBiocDataPackage.sh "rnbeads.mm9-1.34.0"
diff --git a/recipes/bioconductor-rnbeads.rn5/meta.yaml b/recipes/bioconductor-rnbeads.rn5/meta.yaml
index 8dbb3257a3563..82d6777b5462e 100644
--- a/recipes/bioconductor-rnbeads.rn5/meta.yaml
+++ b/recipes/bioconductor-rnbeads.rn5/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "RnBeads.rn5" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 704db9c010242b63f68e02de58b77ee0
+  md5: ed075717da62b68e7a9b47a14ac09a35
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnbeads.rn5", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RnBeads
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rnbeads.rn5/post-link.sh b/recipes/bioconductor-rnbeads.rn5/post-link.sh
index e47bc2c56b22e..a47dfa0ed34b1 100644
--- a/recipes/bioconductor-rnbeads.rn5/post-link.sh
+++ b/recipes/bioconductor-rnbeads.rn5/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rnbeads.rn5-1.32.0"
+installBiocDataPackage.sh "rnbeads.rn5-1.34.0"
diff --git a/recipes/bioconductor-rnbeads/meta.yaml b/recipes/bioconductor-rnbeads/meta.yaml
index 2f00032bce087..23bf5205b7e61 100644
--- a/recipes/bioconductor-rnbeads/meta.yaml
+++ b/recipes/bioconductor-rnbeads/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.18.0" %}
+{% set version = "2.20.0" %}
 {% set name = "RnBeads" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 350ab4afb8a56dce1661f349388f7145
+  md5: 40a269bbbddeb407ca5c4545cb6852ff
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnbeads", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Category, GOstats, Gviz, IlluminaHumanMethylation450kmanifest, RPMM, RnBeads.hg19, RnBeads.mm9, XML, annotate, biomaRt, foreach, doParallel, ggbio, isva, mclust, mgcv, minfi, nlme, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, quadprog, rtracklayer, qvalue, sva, wateRmelon, wordcloud, qvalue, argparse, glmnet, IlluminaHumanMethylation450kanno.ilmn12.hg19, scales, missMethyl, impute, shiny, shinyjs, plotrix, hexbin, RUnit, MethylSeekR, sesame
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-illuminaio >=0.42.0,<0.43.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-methylumi >=2.46.0,<2.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-illuminaio >=0.44.0,<0.45.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-methylumi >=2.48.0,<2.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cluster
     - r-ff
@@ -39,13 +40,13 @@ requirements:
     - r-matrixstats
     - r-plyr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-illuminaio >=0.42.0,<0.43.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-methylumi >=2.46.0,<2.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-illuminaio >=0.44.0,<0.45.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-methylumi >=2.48.0,<2.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cluster
     - r-ff
diff --git a/recipes/bioconductor-rnits/meta.yaml b/recipes/bioconductor-rnits/meta.yaml
index 4dd15afc090c0..64032849b40f0 100644
--- a/recipes/bioconductor-rnits/meta.yaml
+++ b/recipes/bioconductor-rnits/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "Rnits" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9743b9d8fca7c4ae623a115779553815
+  md5: 4b767809cee3875eb2f7f991fba83771
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnits", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, GEOquery, stringr
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
     - r-boot
     - r-ggplot2
     - r-reshape2
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
     - r-boot
     - r-ggplot2
diff --git a/recipes/bioconductor-rnu34.db/meta.yaml b/recipes/bioconductor-rnu34.db/meta.yaml
index 326295a981604..bda66c2c787a1 100644
--- a/recipes/bioconductor-rnu34.db/meta.yaml
+++ b/recipes/bioconductor-rnu34.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "rnu34.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 7345817f2f26270779d2409b8a17a5bd
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnu34.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rnu34cdf/meta.yaml b/recipes/bioconductor-rnu34cdf/meta.yaml
index d0398e2fadfb0..2611cd113cc77 100644
--- a/recipes/bioconductor-rnu34cdf/meta.yaml
+++ b/recipes/bioconductor-rnu34cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "rnu34cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 0f2564fc6ac89de4d779faf253f23ce3
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnu34cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rnu34probe/meta.yaml b/recipes/bioconductor-rnu34probe/meta.yaml
index 6e71cfd8f8834..7c8368ad92536 100644
--- a/recipes/bioconductor-rnu34probe/meta.yaml
+++ b/recipes/bioconductor-rnu34probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "rnu34probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: c5ef9793a437f2bf990f6e84d31da0de
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rnu34probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-roar/meta.yaml b/recipes/bioconductor-roar/meta.yaml
index c1e9fe04b60a1..3e8eae075f595 100644
--- a/recipes/bioconductor-roar/meta.yaml
+++ b/recipes/bioconductor-roar/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "roar" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 1cbb5f5c6c86922f0f97a3c5318d9500
+  md5: 563dcc245ffbc288c2e6ec9a9c138faa
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-roar", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RNAseqData.HNRNPC.bam.chr14, testthat
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-roastgsa/build.sh b/recipes/bioconductor-roastgsa/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-roastgsa/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-roastgsa/meta.yaml b/recipes/bioconductor-roastgsa/meta.yaml
new file mode 100644
index 0000000000000..0f8d85c23ec25
--- /dev/null
+++ b/recipes/bioconductor-roastgsa/meta.yaml
@@ -0,0 +1,47 @@
+{% set version = "1.0.0" %}
+{% set name = "roastgsa" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
+  md5: 83d20d90ed18c719222042ae3d9f46d3
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-roastgsa", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, knitr, rmarkdown, GSEABenchmarkeR, EnrichmentBrowser, preprocessCore, DESeq2
+requirements:
+  host:
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - r-base
+    - r-ggplot2
+    - r-gplots
+    - r-rcolorbrewer
+  run:
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - r-base
+    - r-ggplot2
+    - r-gplots
+    - r-rcolorbrewer
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'Rotation based gene set analysis'
+  description: 'This package implements a variety of functions useful for gene set analysis using rotations to approximate the null distribution. It contributes with the implementation of seven test statistic scores that can be used with different goals and interpretations. Several functions are available to complement the statistical results with graphical representations.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-roberts2005annotation.db/meta.yaml b/recipes/bioconductor-roberts2005annotation.db/meta.yaml
index 590ff86933c63..54bd6307c474c 100644
--- a/recipes/bioconductor-roberts2005annotation.db/meta.yaml
+++ b/recipes/bioconductor-roberts2005annotation.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "Roberts2005Annotation.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: fb28aaf1a1e0c81cf936badc674b754a
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-roberts2005annotation.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-roc/meta.yaml b/recipes/bioconductor-roc/meta.yaml
index cfe53ee311603..61a1d7d633cdd 100644
--- a/recipes/bioconductor-roc/meta.yaml
+++ b/recipes/bioconductor-roc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.76.0" %}
+{% set version = "1.78.0" %}
 {% set name = "ROC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f5df627cc8040f624fb107b972e9dc12
+  md5: 2b84dc68639bbe6dbc5e4b9eeb429dbb
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-roc", max_pin="x.x") }}'
 # Suggests: rmarkdown, Biobase, BiocStyle
 requirements:
   host:
@@ -40,6 +41,8 @@ about:
   summary: 'utilities for ROC, with microarray focus'
   description: 'Provide utilities for ROC, with microarray focus.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:roc
     - doi:10.1038/nmeth.3252
diff --git a/recipes/bioconductor-rocpai/meta.yaml b/recipes/bioconductor-rocpai/meta.yaml
index 6519f055f9742..f3147e68cacfa 100644
--- a/recipes/bioconductor-rocpai/meta.yaml
+++ b/recipes/bioconductor-rocpai/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "ROCpAI" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3672b1cf97ce197f0f992c5b8fc0d27e
+  md5: 8d2702c4029efeb23248e107384ffd27
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rocpai", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-fission >=1.20.0,<1.21.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-fission >=1.22.0,<1.23.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-boot
     - r-knitr
   run:
-    - 'bioconductor-fission >=1.20.0,<1.21.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-fission >=1.22.0,<1.23.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-boot
     - r-knitr
diff --git a/recipes/bioconductor-rolde/meta.yaml b/recipes/bioconductor-rolde/meta.yaml
index 2144127e4bca7..839f45ba07b2e 100644
--- a/recipes/bioconductor-rolde/meta.yaml
+++ b/recipes/bioconductor-rolde/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "RolDE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c372addd6ebd25bd625bc7c490b3b38d
+  md5: 12c19e976fa6e9be2e9fa9a433690355
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rolde", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, printr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-rots >=1.28.0,<1.29.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-rots >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-doparallel
     - r-dorng
@@ -32,9 +33,9 @@ requirements:
     - r-nlme
     - r-rngtools
   run:
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-rots >=1.28.0,<1.29.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-rots >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-doparallel
     - r-dorng
diff --git a/recipes/bioconductor-rols/meta.yaml b/recipes/bioconductor-rols/meta.yaml
index 8ed0008c17f7d..caf228701c0ba 100644
--- a/recipes/bioconductor-rols/meta.yaml
+++ b/recipes/bioconductor-rols/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.28.0" %}
+{% set version = "2.30.0" %}
 {% set name = "rols" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 20398c9ed6df71963c3f186cbb5007d2
+  md5: ef7159fc8010e7a7a1c5ecf285b91fc8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rols", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GO.db, knitr (>= 1.1.0), BiocStyle (>= 2.5.19), testthat, lubridate, DT, rmarkdown,
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-httr
     - r-jsonlite
     - r-progress
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-httr
     - r-jsonlite
diff --git a/recipes/bioconductor-rontotools/meta.yaml b/recipes/bioconductor-rontotools/meta.yaml
index c9696b3f8fe86..af20e2f7fb71a 100644
--- a/recipes/bioconductor-rontotools/meta.yaml
+++ b/recipes/bioconductor-rontotools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.28.0" %}
+{% set version = "2.30.0" %}
 {% set name = "ROntoTools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c3c0b94ebd7487fcddaa27f914b3cd8c
+  md5: 11764a125b9411a5b2d2ba20f4c64024
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rontotools", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-kegggraph >=1.60.0,<1.61.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-kegggraph >=1.62.0,<1.63.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-boot
   run:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-kegggraph >=1.60.0,<1.61.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-kegggraph >=1.62.0,<1.63.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-boot
 test:
diff --git a/recipes/bioconductor-ropls/meta.yaml b/recipes/bioconductor-ropls/meta.yaml
index fed107c32ab86..eda59d7bb9280 100644
--- a/recipes/bioconductor-ropls/meta.yaml
+++ b/recipes/bioconductor-ropls/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "ropls" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 43cd3622aa3b6632a328590056d0b727
+  md5: a1c4a1710eb179bb29f3831a5fe80849
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ropls", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, BiocStyle, knitr, multtest, omicade4, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-multidataset >=1.28.0,<1.29.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-multidataset >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-plotly
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-multidataset >=1.28.0,<1.29.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-multidataset >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-plotly
diff --git a/recipes/bioconductor-roseq/meta.yaml b/recipes/bioconductor-roseq/meta.yaml
index b7c8fd1c0f45c..487093f51cc24 100644
--- a/recipes/bioconductor-roseq/meta.yaml
+++ b/recipes/bioconductor-roseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "ROSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 825b4add5728a53d474403048dbbb8c4
+  md5: 9af42531e92f5a535c6a139f0856e6e3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-roseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-pbmcapply
   run:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-pbmcapply
 test:
diff --git a/recipes/bioconductor-rots/meta.yaml b/recipes/bioconductor-rots/meta.yaml
index 94fa2835ce543..9ac10605af128 100644
--- a/recipes/bioconductor-rots/meta.yaml
+++ b/recipes/bioconductor-rots/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "ROTS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0fe2a766a69ca811fc88c2141b937e4f
+  md5: 02d51e24e501790ad3049c1bb5b3f90b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rots", max_pin="x.x") }}'
 # Suggests: testthat
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-rcpp
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-rcpp
   build:
diff --git a/recipes/bioconductor-rpa/meta.yaml b/recipes/bioconductor-rpa/meta.yaml
index 88699561f5d27..f6f0aaf7b94d8 100644
--- a/recipes/bioconductor-rpa/meta.yaml
+++ b/recipes/bioconductor-rpa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.56.0" %}
+{% set version = "1.58.0" %}
 {% set name = "RPA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b7337a8f9784ebb75d6e058c977717f2
+  md5: ea38f5a76b570c091b8f818c48c836cb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rpa", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, parallel
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
     - r-base
     - r-rmarkdown
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
     - r-base
     - r-rmarkdown
 test:
diff --git a/recipes/bioconductor-rprimer/meta.yaml b/recipes/bioconductor-rprimer/meta.yaml
index b40f74abaaf73..cf4019c640733 100644
--- a/recipes/bioconductor-rprimer/meta.yaml
+++ b/recipes/bioconductor-rprimer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "rprimer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 9e05e6e2bf6f84403840fa9654f99a7e
+  md5: f866266895669cd0e898d1ffb0df86fa
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rprimer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, covr, kableExtra, knitr, rmarkdown, styler, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-bslib
     - r-dt
@@ -35,9 +36,9 @@ requirements:
     - r-shinycssloaders
     - r-shinyfeedback
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-bslib
     - r-dt
diff --git a/recipes/bioconductor-rprotobuflib/meta.yaml b/recipes/bioconductor-rprotobuflib/meta.yaml
index 887fd41d8f8d0..4d6cc29a5135a 100644
--- a/recipes/bioconductor-rprotobuflib/meta.yaml
+++ b/recipes/bioconductor-rprotobuflib/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.12.0" %}
+{% set version = "2.14.0" %}
 {% set name = "RProtoBufLib" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 73ac1a9dd31c1bc83d88a24008beb92b
+  md5: e7351127e6b19daaae94fcecc970292b
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rprotobuflib", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown
 # SystemRequirements: GNU make
 requirements:
@@ -40,6 +41,8 @@ about:
   summary: 'C++ headers and static libraries of Protocol buffers'
   description: 'This package provides the headers and static library of Protocol buffers for other R packages to compile and link against.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   parent_recipe:
     name: bioconductor-rprotobuflib
     path: recipes/bioconductor-rprotobuflib
diff --git a/recipes/bioconductor-rpx/meta.yaml b/recipes/bioconductor-rpx/meta.yaml
index 99d8734560712..95d2c560c7b95 100644
--- a/recipes/bioconductor-rpx/meta.yaml
+++ b/recipes/bioconductor-rpx/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.8.0" %}
+{% set version = "2.10.0" %}
 {% set name = "rpx" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 39f8bb2ca64ca8cde2630fb139038ea1
+  md5: 7e3f2004892b6fb40746c0dcdd990a43
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rpx", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biostrings, BiocStyle, testthat, knitr, tibble, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
     - r-base
     - r-curl
     - r-jsonlite
     - r-rcurl
     - r-xml2
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
     - r-base
     - r-curl
     - r-jsonlite
diff --git a/recipes/bioconductor-rqc/meta.yaml b/recipes/bioconductor-rqc/meta.yaml
index fbb30894aa710..c7e563d22e776 100644
--- a/recipes/bioconductor-rqc/meta.yaml
+++ b/recipes/bioconductor-rqc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "Rqc" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 64ea2b574c7fb886f19aade0f205d697
+  md5: 425dbc839b22b6af4d19ca20174c24c1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rqc", max_pin="x.x") }}'
 # Suggests: rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-biovizbase >=1.48.0,<1.49.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfiles >=1.36.0,<1.37.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-biovizbase >=1.50.0,<1.51.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfiles >=1.38.0,<1.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - r-ggplot2
     - 'r-knitr >=1.7'
@@ -42,17 +43,17 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-biovizbase >=1.48.0,<1.49.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfiles >=1.36.0,<1.37.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-biovizbase >=1.50.0,<1.51.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfiles >=1.38.0,<1.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
     - r-ggplot2
     - 'r-knitr >=1.7'
diff --git a/recipes/bioconductor-rqt/meta.yaml b/recipes/bioconductor-rqt/meta.yaml
index 4269eb2172ed2..b028572a28d95 100644
--- a/recipes/bioconductor-rqt/meta.yaml
+++ b/recipes/bioconductor-rqt/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "rqt" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: b9f8ad7ad17223f2fb69df9879e33574
+  md5: b6120899c4586c9dcfd093db762af1c8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rqt", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-ropls >=1.32.0,<1.33.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-ropls >=1.34.0,<1.35.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-car
     - r-compquadform
@@ -32,8 +33,8 @@ requirements:
     - r-pls
     - r-runit
   run:
-    - 'bioconductor-ropls >=1.32.0,<1.33.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-ropls >=1.34.0,<1.35.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-car
     - r-compquadform
diff --git a/recipes/bioconductor-rqubic/meta.yaml b/recipes/bioconductor-rqubic/meta.yaml
index f7b64a6ae9e77..a7d84df176096 100644
--- a/recipes/bioconductor-rqubic/meta.yaml
+++ b/recipes/bioconductor-rqubic/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "rqubic" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 7cfb52fd500be860a103d30e22ede5e1
+  md5: 018144d5ccfbe2df88a79212dedc2066
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rqubic", max_pin="x.x") }}'
 # Suggests: RColorBrewer
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-biclust
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-biclust
   build:
diff --git a/recipes/bioconductor-rrbsdata/meta.yaml b/recipes/bioconductor-rrbsdata/meta.yaml
index 8659e51ec8464..eccd81fafefdc 100644
--- a/recipes/bioconductor-rrbsdata/meta.yaml
+++ b/recipes/bioconductor-rrbsdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "RRBSdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a418c0df3db7d2285a1629bd473129ce
+  md5: 04bcf0f0348dc54984ca9506773820ec
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rrbsdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biseq >=1.40.0,<1.41.0'
+    - 'bioconductor-biseq >=1.42.0,<1.43.0'
     - r-base
   run:
-    - 'bioconductor-biseq >=1.40.0,<1.41.0'
+    - 'bioconductor-biseq >=1.42.0,<1.43.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rrbsdata/post-link.sh b/recipes/bioconductor-rrbsdata/post-link.sh
index 92dd5a3f08424..9daeae9d07b91 100644
--- a/recipes/bioconductor-rrbsdata/post-link.sh
+++ b/recipes/bioconductor-rrbsdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rrbsdata-1.20.0"
+installBiocDataPackage.sh "rrbsdata-1.22.0"
diff --git a/recipes/bioconductor-rrdp/meta.yaml b/recipes/bioconductor-rrdp/meta.yaml
index 3652e635a4bac..d4af9718a1b5b 100644
--- a/recipes/bioconductor-rrdp/meta.yaml
+++ b/recipes/bioconductor-rrdp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "rRDP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 73f762d80ae94c8d655ac6c07ec4c3c0
+  md5: 1a6dbbc2c3e31aa382c312202e85ce62
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rrdp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rRDPData
-# SystemRequirements: Java
+# SystemRequirements: Java JDK 1.4 or higher
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
-    - openjdk
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
-    - openjdk
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rrdpdata/meta.yaml b/recipes/bioconductor-rrdpdata/meta.yaml
index 43018f4496c03..e76d77d70c8d6 100644
--- a/recipes/bioconductor-rrdpdata/meta.yaml
+++ b/recipes/bioconductor-rrdpdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "rRDPData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 81a8cf3a83812318bbacb9cc2503f8d1
+  md5: 9ca56f1bf00bfaefb27c351ccc7346ae
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rrdpdata", max_pin="x.x") }}'
   noarch: generic
 # SystemRequirements: Java
 requirements:
   host:
-    - 'bioconductor-rrdp >=1.34.0,<1.35.0'
+    - 'bioconductor-rrdp >=1.36.0,<1.37.0'
     - r-base
     - openjdk
   run:
-    - 'bioconductor-rrdp >=1.34.0,<1.35.0'
+    - 'bioconductor-rrdp >=1.36.0,<1.37.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
     - openjdk
 test:
   commands:
diff --git a/recipes/bioconductor-rrdpdata/post-link.sh b/recipes/bioconductor-rrdpdata/post-link.sh
index 257b850bd9bad..529c560bd8bc7 100644
--- a/recipes/bioconductor-rrdpdata/post-link.sh
+++ b/recipes/bioconductor-rrdpdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rrdpdata-1.20.0"
+installBiocDataPackage.sh "rrdpdata-1.22.0"
diff --git a/recipes/bioconductor-rrho/meta.yaml b/recipes/bioconductor-rrho/meta.yaml
index a588bc711b0b4..7873debb38070 100644
--- a/recipes/bioconductor-rrho/meta.yaml
+++ b/recipes/bioconductor-rrho/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "RRHO" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1715d1199550801cb72bb4d0077d6c7f
+  md5: 979e74a493ef06b25a98574facdd4c3f
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rrho", max_pin="x.x") }}'
   noarch: generic
 # Suggests: lattice
 requirements:
diff --git a/recipes/bioconductor-rrvgo/meta.yaml b/recipes/bioconductor-rrvgo/meta.yaml
index 64076753029de..f22c0df7d085d 100644
--- a/recipes/bioconductor-rrvgo/meta.yaml
+++ b/recipes/bioconductor-rrvgo/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "rrvgo" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: b877ead2232a39f8df718f2a217968ac
+  md5: d84378ff00f99dfe761c41763a56315b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rrvgo", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, testthat (>= 2.1.0), shinydashboard, DT, plotly, heatmaply, magrittr, utils, clusterProfiler, DOSE, slam, org.Ag.eg.db, org.At.tair.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db, org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db, org.Gg.eg.db, org.Hs.eg.db, org.Mm.eg.db, org.Mmu.eg.db, org.Pt.eg.db, org.Rn.eg.db, org.Sc.sgd.db, org.Ss.eg.db, org.Xl.eg.db
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-gosemsim >=2.26.0,<2.27.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-gosemsim >=2.28.0,<2.29.0'
     - r-base
     - r-ggplot2
     - r-ggrepel
@@ -34,9 +35,9 @@ requirements:
     - r-umap
     - r-wordcloud
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-gosemsim >=2.26.0,<2.27.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-gosemsim >=2.28.0,<2.29.0'
     - r-base
     - r-ggplot2
     - r-ggrepel
diff --git a/recipes/bioconductor-rsamtools/meta.yaml b/recipes/bioconductor-rsamtools/meta.yaml
index 74a81bf5f7acc..55489dfd108c5 100644
--- a/recipes/bioconductor-rsamtools/meta.yaml
+++ b/recipes/bioconductor-rsamtools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.16.0" %}
+{% set version = "2.18.0" %}
 {% set name = "Rsamtools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,47 +11,49 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 14fcdb18a7da2608dd3325bcd7cf1fc9
+  md5: 63af2a7dd2513e992fd78b26ca2b3775
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rsamtools", max_pin="x.x") }}'
 # Suggests: GenomicAlignments, ShortRead (>= 1.19.10), GenomicFeatures, TxDb.Dmelanogaster.UCSC.dm3.ensGene, TxDb.Hsapiens.UCSC.hg18.knownGene, RNAseqData.HNRNPC.bam.chr14, BSgenome.Hsapiens.UCSC.hg19, RUnit, BiocStyle, knitr
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-bitops
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-bitops
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
     - make
+    - libcxx <=17 #[osx]
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
@@ -62,6 +64,8 @@ about:
   description: 'This package provides an interface to the ''samtools'', ''bcftools'', and ''tabix'' utilities for manipulating SAM (Sequence Alignment / Map), FASTA, binary variant call (BCF) and compressed indexed tab-delimited (tabix) files.'
   license_file: LICENSE
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:rsamtools
     - doi:10.1038/nmeth.3252
diff --git a/recipes/bioconductor-rsbml/meta.yaml b/recipes/bioconductor-rsbml/meta.yaml
index 94a4308dbd31c..d79175c91dce7 100644
--- a/recipes/bioconductor-rsbml/meta.yaml
+++ b/recipes/bioconductor-rsbml/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.58.0" %}
+{% set version = "2.60.0" %}
 {% set name = "rsbml" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 5609d4db75e067a6ca2cead8e06e7d1d
+  md5: 9e3df3c47a3bbb5b92bf55b478078d1f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rsbml", max_pin="x.x") }}'
 # SystemRequirements: libsbml (==5.10.2)
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - libblas
     - liblapack
     - 'libsbml >=5.10.2'
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - 'libsbml >=5.10.2'
   build:
diff --git a/recipes/bioconductor-rscudo/meta.yaml b/recipes/bioconductor-rscudo/meta.yaml
index 1bfe843a4066a..0709bb86099e6 100644
--- a/recipes/bioconductor-rscudo/meta.yaml
+++ b/recipes/bioconductor-rscudo/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "rScudo" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a86ef401d20c50d959c82febca2329be
+  md5: 2ca44b84bbccb7ffdc9dc082d9a071ad
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rscudo", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle, knitr, rmarkdown, ALL, RCy3, caret, e1071, parallel, doParallel
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-igraph
     - r-stringr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-igraph
     - r-stringr
diff --git a/recipes/bioconductor-rsemmed/meta.yaml b/recipes/bioconductor-rsemmed/meta.yaml
index 580518cfebf91..1e8115b130485 100644
--- a/recipes/bioconductor-rsemmed/meta.yaml
+++ b/recipes/bioconductor-rsemmed/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "rsemmed" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: a7d28e150432339925902ebb48d4499e
+  md5: 379f918582942443c9823373180a9978
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rsemmed", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, BiocStyle, rmarkdown
 requirements:
diff --git a/recipes/bioconductor-rseqan/meta.yaml b/recipes/bioconductor-rseqan/meta.yaml
index 6271ff68554e7..47423acccd913 100644
--- a/recipes/bioconductor-rseqan/meta.yaml
+++ b/recipes/bioconductor-rseqan/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "RSeqAn" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a456731aa836d8d5d813db5861eb6d31
+  md5: 278ce2c8087516d02a4203bdcf9a6b9f
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rseqan", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, testthat
 requirements:
   host:
diff --git a/recipes/bioconductor-rsubread/meta.yaml b/recipes/bioconductor-rsubread/meta.yaml
index d59b0076ce4ba..486e6a8fe29c4 100644
--- a/recipes/bioconductor-rsubread/meta.yaml
+++ b/recipes/bioconductor-rsubread/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.14.2" %}
+{% set version = "2.16.1" %}
 {% set name = "Rsubread" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,10 +11,12 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 715e55a7c8de2ec0504449d70a9dfc6d
+  md5: ec5687eb02901ff3b62915cf37aa48b4
 build:
   skip: True  # [osx]
   number: 0
+  run_exports:
+    - {{ pin_subpackage("bioconductor-rsubread", max_pin="x") }}
   rpaths:
     - lib/R/lib/
     - lib/
@@ -43,8 +45,9 @@ about:
 extra:
   identifiers:
     - biotools:rsubread
+  additional-platforms:
+    - linux-aarch64
   parent_recipe:
     name: bioconductor-rsubread
     path: recipes/bioconductor-rsubread
     version: 1.30.9
-
diff --git a/recipes/bioconductor-rsvsim/meta.yaml b/recipes/bioconductor-rsvsim/meta.yaml
index 0626335630506..8a08b4435d024 100644
--- a/recipes/bioconductor-rsvsim/meta.yaml
+++ b/recipes/bioconductor-rsvsim/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "RSVSim" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 58aa1505639580f74acc64c3f641b614
+  md5: 0ce59bfd8791d8b1bf0b4fa48ea37e31
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rsvsim", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg19.masked, MASS, rtracklayer
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-rsweep/meta.yaml b/recipes/bioconductor-rsweep/meta.yaml
index 56cb2ae8fdb0d..62261663a3374 100644
--- a/recipes/bioconductor-rsweep/meta.yaml
+++ b/recipes/bioconductor-rsweep/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "rSWeeP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a3e60840b337a6d545b79f804ff0730c
+  md5: 42d80dcf3d267562e175115cdfd4c731
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rsweep", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biostrings, methods, knitr, rmarkdown, BiocStyle
 requirements:
diff --git a/recipes/bioconductor-rta10probeset.db/meta.yaml b/recipes/bioconductor-rta10probeset.db/meta.yaml
index c93a76873722d..02c8c7bd97fab 100644
--- a/recipes/bioconductor-rta10probeset.db/meta.yaml
+++ b/recipes/bioconductor-rta10probeset.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "rta10probeset.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: ce002623471eef89fb841f0bf3e7c9f8
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rta10probeset.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rta10transcriptcluster.db/meta.yaml b/recipes/bioconductor-rta10transcriptcluster.db/meta.yaml
index 40b33d0356e54..2794ecc9761ab 100644
--- a/recipes/bioconductor-rta10transcriptcluster.db/meta.yaml
+++ b/recipes/bioconductor-rta10transcriptcluster.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "8.8.0" %}
 {% set name = "rta10transcriptcluster.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 14ade3f4fca2d1091ccb28e7a777f3e5
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rta10transcriptcluster.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rtca/meta.yaml b/recipes/bioconductor-rtca/meta.yaml
index 976aa90b03b01..ab6f863af48a9 100644
--- a/recipes/bioconductor-rtca/meta.yaml
+++ b/recipes/bioconductor-rtca/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.52.0" %}
+{% set version = "1.54.0" %}
 {% set name = "RTCA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 03617e534844a5f3f0a7af4b9c810ca8
+  md5: 8e1039d013ef1d5e08b48003ecffc25a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rtca", max_pin="x.x") }}'
   noarch: generic
 # Suggests: xtable
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-gtools
     - r-rcolorbrewer
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-gtools
     - r-rcolorbrewer
diff --git a/recipes/bioconductor-rtcga.clinical/meta.yaml b/recipes/bioconductor-rtcga.clinical/meta.yaml
index fdaf2a4cc5641..0cbafa6e3191f 100644
--- a/recipes/bioconductor-rtcga.clinical/meta.yaml
+++ b/recipes/bioconductor-rtcga.clinical/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "20151101.30.0" %}
+{% set version = "20151101.32.0" %}
 {% set name = "RTCGA.clinical" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 772ed6b2aafe700536b01d9b4c55dfef
+  md5: 9c32b8aef86c9ad34ea8c3672575d724
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rtcga.clinical", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, knitr
 requirements:
   host:
-    - 'bioconductor-rtcga >=1.30.0,<1.31.0'
+    - 'bioconductor-rtcga >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-rtcga >=1.30.0,<1.31.0'
+    - 'bioconductor-rtcga >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rtcga.clinical/post-link.sh b/recipes/bioconductor-rtcga.clinical/post-link.sh
index 65dba96a8e66c..a682ce0470fa4 100644
--- a/recipes/bioconductor-rtcga.clinical/post-link.sh
+++ b/recipes/bioconductor-rtcga.clinical/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rtcga.clinical-20151101.30.0"
+installBiocDataPackage.sh "rtcga.clinical-20151101.32.0"
diff --git a/recipes/bioconductor-rtcga.cnv/meta.yaml b/recipes/bioconductor-rtcga.cnv/meta.yaml
index 4c5be8f8b8803..2b0f7466f8e32 100644
--- a/recipes/bioconductor-rtcga.cnv/meta.yaml
+++ b/recipes/bioconductor-rtcga.cnv/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "RTCGA.CNV" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4c2f73f6edefa0ca82b7c6f9add37156
+  md5: 15267c2322da59ccd344657a28d2ba6a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rtcga.cnv", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-rtcga >=1.30.0,<1.31.0'
+    - 'bioconductor-rtcga >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-rtcga >=1.30.0,<1.31.0'
+    - 'bioconductor-rtcga >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rtcga.cnv/post-link.sh b/recipes/bioconductor-rtcga.cnv/post-link.sh
index 09dfafdfe1a37..046dd8d84df82 100644
--- a/recipes/bioconductor-rtcga.cnv/post-link.sh
+++ b/recipes/bioconductor-rtcga.cnv/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rtcga.cnv-1.28.0"
+installBiocDataPackage.sh "rtcga.cnv-1.30.0"
diff --git a/recipes/bioconductor-rtcga.methylation/meta.yaml b/recipes/bioconductor-rtcga.methylation/meta.yaml
index 4b33e944578bd..60cb29db9aef4 100644
--- a/recipes/bioconductor-rtcga.methylation/meta.yaml
+++ b/recipes/bioconductor-rtcga.methylation/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "RTCGA.methylation" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1aff8900c676eb32d9655b0d4fbf834e
+  md5: 9d90704cb34a57878ef719348489c702
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rtcga.methylation", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-rtcga >=1.30.0,<1.31.0'
+    - 'bioconductor-rtcga >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-rtcga >=1.30.0,<1.31.0'
+    - 'bioconductor-rtcga >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rtcga.methylation/post-link.sh b/recipes/bioconductor-rtcga.methylation/post-link.sh
index 4e1d367fc2b38..0149be259586a 100644
--- a/recipes/bioconductor-rtcga.methylation/post-link.sh
+++ b/recipes/bioconductor-rtcga.methylation/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rtcga.methylation-1.28.0"
+installBiocDataPackage.sh "rtcga.methylation-1.30.0"
diff --git a/recipes/bioconductor-rtcga.mirnaseq/meta.yaml b/recipes/bioconductor-rtcga.mirnaseq/meta.yaml
index 5060dc87de4be..b3bc9acfe4918 100644
--- a/recipes/bioconductor-rtcga.mirnaseq/meta.yaml
+++ b/recipes/bioconductor-rtcga.mirnaseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "RTCGA.miRNASeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 61a11184082b390c05d74b660d06635d
+  md5: 744062c2f0db68a88e27db9d61929a79
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rtcga.mirnaseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-rtcga >=1.30.0,<1.31.0'
+    - 'bioconductor-rtcga >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-rtcga >=1.30.0,<1.31.0'
+    - 'bioconductor-rtcga >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rtcga.mirnaseq/post-link.sh b/recipes/bioconductor-rtcga.mirnaseq/post-link.sh
index eca1a892dd0ca..4553a7939d834 100644
--- a/recipes/bioconductor-rtcga.mirnaseq/post-link.sh
+++ b/recipes/bioconductor-rtcga.mirnaseq/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rtcga.mirnaseq-1.28.0"
+installBiocDataPackage.sh "rtcga.mirnaseq-1.30.0"
diff --git a/recipes/bioconductor-rtcga.mrna/meta.yaml b/recipes/bioconductor-rtcga.mrna/meta.yaml
index f9aa8092374df..0fd9e1c2bc703 100644
--- a/recipes/bioconductor-rtcga.mrna/meta.yaml
+++ b/recipes/bioconductor-rtcga.mrna/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "RTCGA.mRNA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 63adca06a76cfc761b88b853a34580d1
+  md5: c9774207df355ef5945677d36e915103
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rtcga.mrna", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-rtcga >=1.30.0,<1.31.0'
+    - 'bioconductor-rtcga >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-rtcga >=1.30.0,<1.31.0'
+    - 'bioconductor-rtcga >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rtcga.mrna/post-link.sh b/recipes/bioconductor-rtcga.mrna/post-link.sh
index f0495038ac542..75fe3ba6ceb43 100644
--- a/recipes/bioconductor-rtcga.mrna/post-link.sh
+++ b/recipes/bioconductor-rtcga.mrna/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rtcga.mrna-1.28.0"
+installBiocDataPackage.sh "rtcga.mrna-1.30.0"
diff --git a/recipes/bioconductor-rtcga.mutations/meta.yaml b/recipes/bioconductor-rtcga.mutations/meta.yaml
index bfa83041ff12b..dc0d506bc3755 100644
--- a/recipes/bioconductor-rtcga.mutations/meta.yaml
+++ b/recipes/bioconductor-rtcga.mutations/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "20151101.30.0" %}
+{% set version = "20151101.32.0" %}
 {% set name = "RTCGA.mutations" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d1f7686f0203ccdffd3c0d903947ffbb
+  md5: 0740acb5a6a47fd9d1281ccaf80bafed
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rtcga.mutations", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-rtcga >=1.30.0,<1.31.0'
+    - 'bioconductor-rtcga >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-rtcga >=1.30.0,<1.31.0'
+    - 'bioconductor-rtcga >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rtcga.mutations/post-link.sh b/recipes/bioconductor-rtcga.mutations/post-link.sh
index 7c0a1251f3c7f..82133986d47de 100644
--- a/recipes/bioconductor-rtcga.mutations/post-link.sh
+++ b/recipes/bioconductor-rtcga.mutations/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rtcga.mutations-20151101.30.0"
+installBiocDataPackage.sh "rtcga.mutations-20151101.32.0"
diff --git a/recipes/bioconductor-rtcga.pancan12/meta.yaml b/recipes/bioconductor-rtcga.pancan12/meta.yaml
index 196c2545fba7a..fed3714cbbb38 100644
--- a/recipes/bioconductor-rtcga.pancan12/meta.yaml
+++ b/recipes/bioconductor-rtcga.pancan12/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "RTCGA.PANCAN12" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3c4fcdde44501b93a022b8b1fe3abf96
+  md5: 8b0742d189afe05f47a2656556d85d0b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rtcga.pancan12", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-rtcga >=1.30.0,<1.31.0'
+    - 'bioconductor-rtcga >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-rtcga >=1.30.0,<1.31.0'
+    - 'bioconductor-rtcga >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rtcga.pancan12/post-link.sh b/recipes/bioconductor-rtcga.pancan12/post-link.sh
index 60c525c0a3a63..a5698c90619ab 100644
--- a/recipes/bioconductor-rtcga.pancan12/post-link.sh
+++ b/recipes/bioconductor-rtcga.pancan12/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rtcga.pancan12-1.28.0"
+installBiocDataPackage.sh "rtcga.pancan12-1.30.0"
diff --git a/recipes/bioconductor-rtcga.rnaseq/meta.yaml b/recipes/bioconductor-rtcga.rnaseq/meta.yaml
index 1fab0e5b25a53..8d5fa4f1313d2 100644
--- a/recipes/bioconductor-rtcga.rnaseq/meta.yaml
+++ b/recipes/bioconductor-rtcga.rnaseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "20151101.30.0" %}
+{% set version = "20151101.32.0" %}
 {% set name = "RTCGA.rnaseq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: df65c9add93e3fa3f2f321442057c807
+  md5: 47bee14c68ff4d1014677eca0ed969a9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rtcga.rnaseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-rtcga >=1.30.0,<1.31.0'
+    - 'bioconductor-rtcga >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-rtcga >=1.30.0,<1.31.0'
+    - 'bioconductor-rtcga >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rtcga.rnaseq/post-link.sh b/recipes/bioconductor-rtcga.rnaseq/post-link.sh
index 55c6465239030..50935322d590a 100644
--- a/recipes/bioconductor-rtcga.rnaseq/post-link.sh
+++ b/recipes/bioconductor-rtcga.rnaseq/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rtcga.rnaseq-20151101.30.0"
+installBiocDataPackage.sh "rtcga.rnaseq-20151101.32.0"
diff --git a/recipes/bioconductor-rtcga.rppa/meta.yaml b/recipes/bioconductor-rtcga.rppa/meta.yaml
index e84e52e6ee075..62d36b44246ca 100644
--- a/recipes/bioconductor-rtcga.rppa/meta.yaml
+++ b/recipes/bioconductor-rtcga.rppa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "RTCGA.RPPA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: caff1ad6b62dbd868be8cf6452cc4312
+  md5: 5eccece412039d43cdf74aec284fa0d9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rtcga.rppa", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-rtcga >=1.30.0,<1.31.0'
+    - 'bioconductor-rtcga >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-rtcga >=1.30.0,<1.31.0'
+    - 'bioconductor-rtcga >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rtcga.rppa/post-link.sh b/recipes/bioconductor-rtcga.rppa/post-link.sh
index 529c9967d90f1..382ca3c6abed1 100644
--- a/recipes/bioconductor-rtcga.rppa/post-link.sh
+++ b/recipes/bioconductor-rtcga.rppa/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "rtcga.rppa-1.28.0"
+installBiocDataPackage.sh "rtcga.rppa-1.30.0"
diff --git a/recipes/bioconductor-rtcga/meta.yaml b/recipes/bioconductor-rtcga/meta.yaml
index 988503b8e726c..84fabac1dc0ff 100644
--- a/recipes/bioconductor-rtcga/meta.yaml
+++ b/recipes/bioconductor-rtcga/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "RTCGA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b3e0d94c8945799da632011ed8db9c34
+  md5: 97f413704d77f40ecbe00a1e0d25602d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rtcga", max_pin="x.x") }}'
   noarch: generic
 # Suggests: devtools, testthat, pander, Biobase, GenomicRanges, IRanges, S4Vectors, RTCGA.rnaseq, RTCGA.clinical, RTCGA.mutations, RTCGA.RPPA, RTCGA.mRNA, RTCGA.miRNASeq, RTCGA.methylation, RTCGA.CNV, magrittr, tidyr
 requirements:
diff --git a/recipes/bioconductor-rtcgatoolbox/meta.yaml b/recipes/bioconductor-rtcgatoolbox/meta.yaml
index 6300eefa7e782..22e51db05ee47 100644
--- a/recipes/bioconductor-rtcgatoolbox/meta.yaml
+++ b/recipes/bioconductor-rtcgatoolbox/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.30.0" %}
+{% set version = "2.32.1" %}
 {% set name = "RTCGAToolbox" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,45 +11,44 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9a4dce01f2ceec3f3881c02b9bd0b5f7
+  md5: 002662ddf44b6ca3e771db3adcbda6d8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rtcgatoolbox", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, Homo.sapiens, knitr, readr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-raggedexperiment >=1.24.0,<1.25.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tcgautils >=1.20.0,<1.21.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-raggedexperiment >=1.26.0,<1.27.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tcgautils >=1.22.0,<1.23.0'
     - r-base
     - r-data.table
     - r-httr
-    - r-rcircos
     - r-rcurl
     - r-rjsonio
     - r-rvest
     - r-stringr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-raggedexperiment >=1.24.0,<1.25.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tcgautils >=1.20.0,<1.21.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-raggedexperiment >=1.26.0,<1.27.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tcgautils >=1.22.0,<1.23.0'
     - r-base
     - r-data.table
     - r-httr
-    - r-rcircos
     - r-rcurl
     - r-rjsonio
     - r-rvest
diff --git a/recipes/bioconductor-rtn/meta.yaml b/recipes/bioconductor-rtn/meta.yaml
index e222318b7961b..31510ebec49e0 100644
--- a/recipes/bioconductor-rtn/meta.yaml
+++ b/recipes/bioconductor-rtn/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.24.0" %}
+{% set version = "2.26.0" %}
 {% set name = "RTN" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 486eee6f562b159c0d54c65a4bd957d4
+  md5: 3e79f58bcc4f0ac95a48819a0027028e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rtn", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-minet >=3.58.0,<3.59.0'
-    - 'bioconductor-reder >=2.4.0,<2.5.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-viper >=1.34.0,<1.35.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-minet >=3.60.0,<3.61.0'
+    - 'bioconductor-reder >=2.6.0,<2.7.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-viper >=1.36.0,<1.37.0'
     - r-base
     - r-car
     - r-data.table
@@ -37,13 +38,13 @@ requirements:
     - r-pwr
     - r-snow
   run:
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-minet >=3.58.0,<3.59.0'
-    - 'bioconductor-reder >=2.4.0,<2.5.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-viper >=1.34.0,<1.35.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-minet >=3.60.0,<3.61.0'
+    - 'bioconductor-reder >=2.6.0,<2.7.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-viper >=1.36.0,<1.37.0'
     - r-base
     - r-car
     - r-data.table
diff --git a/recipes/bioconductor-rtnduals/meta.yaml b/recipes/bioconductor-rtnduals/meta.yaml
index 1596d9b351656..b9f3b2044cd8e 100644
--- a/recipes/bioconductor-rtnduals/meta.yaml
+++ b/recipes/bioconductor-rtnduals/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "RTNduals" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 95497f3821f66f3cd274745614587884
+  md5: 5a4f986eb1a34493a1a577ea3546fe92
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rtnduals", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-rtn >=2.24.0,<2.25.0'
+    - 'bioconductor-rtn >=2.26.0,<2.27.0'
     - r-base
   run:
-    - 'bioconductor-rtn >=2.24.0,<2.25.0'
+    - 'bioconductor-rtn >=2.26.0,<2.27.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-rtnsurvival/meta.yaml b/recipes/bioconductor-rtnsurvival/meta.yaml
index 71d2686f5b910..42c05a101eef4 100644
--- a/recipes/bioconductor-rtnsurvival/meta.yaml
+++ b/recipes/bioconductor-rtnsurvival/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "RTNsurvival" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7f61ac2a0851b96b39fef5a9b4299e20
+  md5: db9d03eee81fed17fae3acb66a07893f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rtnsurvival", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Fletcher2013b, knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-rtn >=2.24.0,<2.25.0'
-    - 'bioconductor-rtnduals >=1.24.0,<1.25.0'
+    - 'bioconductor-rtn >=2.26.0,<2.27.0'
+    - 'bioconductor-rtnduals >=1.26.0,<1.27.0'
     - r-base
     - r-data.table
     - r-dunn.test
@@ -33,8 +34,8 @@ requirements:
     - r-scales
     - r-survival
   run:
-    - 'bioconductor-rtn >=2.24.0,<2.25.0'
-    - 'bioconductor-rtnduals >=1.24.0,<1.25.0'
+    - 'bioconductor-rtn >=2.26.0,<2.27.0'
+    - 'bioconductor-rtnduals >=1.26.0,<1.27.0'
     - r-base
     - r-data.table
     - r-dunn.test
diff --git a/recipes/bioconductor-rtopper/meta.yaml b/recipes/bioconductor-rtopper/meta.yaml
index f3de0abc3850e..70748cb77078b 100644
--- a/recipes/bioconductor-rtopper/meta.yaml
+++ b/recipes/bioconductor-rtopper/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "RTopper" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 05f914a8fec4de3ad0769d298e50719e
+  md5: e551ec836b4c0743feabbd2deff66cb8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rtopper", max_pin="x.x") }}'
   noarch: generic
 # Suggests: org.Hs.eg.db, KEGGREST, GO.db
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-rtpca/meta.yaml b/recipes/bioconductor-rtpca/meta.yaml
index 6ca2b8c374d97..dc314446feed5 100644
--- a/recipes/bioconductor-rtpca/meta.yaml
+++ b/recipes/bioconductor-rtpca/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "Rtpca" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 92e3001dc980973d8a33bc0a8310d99c
+  md5: 671f34f1c510812fc37d66ed50378d75
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rtpca", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, TPP, testthat, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-dplyr
     - r-fdrtool
@@ -30,7 +31,7 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-dplyr
     - r-fdrtool
diff --git a/recipes/bioconductor-rtracklayer/meta.yaml b/recipes/bioconductor-rtracklayer/meta.yaml
index 967607fc68109..5e0eb2d16298a 100644
--- a/recipes/bioconductor-rtracklayer/meta.yaml
+++ b/recipes/bioconductor-rtracklayer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.60.0" %}
+{% set version = "1.62.0" %}
 {% set name = "rtracklayer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: ea85a15c469bbc3b7c909fee857b02bc
+  md5: a16a9ca02e49808b38823899860abdb6
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rtracklayer", max_pin="x.x") }}'
 # Suggests: BSgenome (>= 1.33.4), humanStemCell, microRNA (>= 1.1.1), genefilter, limma, org.Hs.eg.db, hgu133plus2.db, GenomicFeatures, BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocio >=1.10.0,<1.11.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocio >=1.12.0,<1.13.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - 'r-rcurl >=1.4-2'
     - 'r-restfulr >=0.0.13'
@@ -38,17 +39,17 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocio >=1.10.0,<1.11.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocio >=1.12.0,<1.13.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - 'r-rcurl >=1.4-2'
     - 'r-restfulr >=0.0.13'
@@ -67,6 +68,8 @@ about:
   description: 'Extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport.'
   license_file: LICENSE
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:rtracklayer
   parent_recipe:
diff --git a/recipes/bioconductor-rtreemix/meta.yaml b/recipes/bioconductor-rtreemix/meta.yaml
index c454a93b616db..3fcbf4f2015c1 100644
--- a/recipes/bioconductor-rtreemix/meta.yaml
+++ b/recipes/bioconductor-rtreemix/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.62.0" %}
+{% set version = "1.64.0" %}
 {% set name = "Rtreemix" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4d05f9b9b4dce2e4a90fd273abcee669
+  md5: 3a9bda84ad8cd784165f1b8ce1a43af7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rtreemix", max_pin="x.x") }}'
 # Suggests: Rgraphviz
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-hmisc
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-hmisc
   build:
diff --git a/recipes/bioconductor-rtrm/meta.yaml b/recipes/bioconductor-rtrm/meta.yaml
index a0eff930f80c6..e12f221409eeb 100644
--- a/recipes/bioconductor-rtrm/meta.yaml
+++ b/recipes/bioconductor-rtrm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "rTRM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6284b5e947d0c1b087ed858e85a80b11
+  md5: 2804488949a044166efe737d4e25d9ac
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rtrm", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, MotifDb, graph, PWMEnrich, biomaRt, Biostrings, BSgenome.Mmusculus.UCSC.mm8.masked, org.Hs.eg.db, org.Mm.eg.db, ggplot2, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - 'r-igraph >=1.0'
     - r-rsqlite
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - r-dbi
     - 'r-igraph >=1.0'
diff --git a/recipes/bioconductor-rtrmui/meta.yaml b/recipes/bioconductor-rtrmui/meta.yaml
index eb45f8922de4a..c92d5cb854754 100644
--- a/recipes/bioconductor-rtrmui/meta.yaml
+++ b/recipes/bioconductor-rtrmui/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "rTRMui" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9255a3ec1721743cb12a993094fe52bb
+  md5: 6e1589a0f3e51870f4eb71a0eb56d915
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rtrmui", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-motifdb >=1.42.0,<1.43.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rtrm >=1.38.0,<1.39.0'
+    - 'bioconductor-motifdb >=1.44.0,<1.45.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rtrm >=1.40.0,<1.41.0'
     - r-base
     - 'r-shiny >=0.9'
   run:
-    - 'bioconductor-motifdb >=1.42.0,<1.43.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rtrm >=1.38.0,<1.39.0'
+    - 'bioconductor-motifdb >=1.44.0,<1.45.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rtrm >=1.40.0,<1.41.0'
     - r-base
     - 'r-shiny >=0.9'
 test:
diff --git a/recipes/bioconductor-rtu34.db/meta.yaml b/recipes/bioconductor-rtu34.db/meta.yaml
index 3746466128099..fc5ff8cdaf925 100644
--- a/recipes/bioconductor-rtu34.db/meta.yaml
+++ b/recipes/bioconductor-rtu34.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "rtu34.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: f46c4763627f1a9e00cdc9d0af8c5f2e
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rtu34.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rtu34cdf/meta.yaml b/recipes/bioconductor-rtu34cdf/meta.yaml
index 687bfa4f11997..4c46f39a9d9c1 100644
--- a/recipes/bioconductor-rtu34cdf/meta.yaml
+++ b/recipes/bioconductor-rtu34cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "rtu34cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 317abfcca319d01eb14f16efa6d91da1
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rtu34cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rtu34probe/meta.yaml b/recipes/bioconductor-rtu34probe/meta.yaml
index 6e82cebf7cdfb..85fe1dcc09abf 100644
--- a/recipes/bioconductor-rtu34probe/meta.yaml
+++ b/recipes/bioconductor-rtu34probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "rtu34probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 1778d857a61bf181b80b9fcf46ebd2c3
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rtu34probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-runibic/meta.yaml b/recipes/bioconductor-runibic/meta.yaml
index 7cca70531af16..2880440cd9bb6 100644
--- a/recipes/bioconductor-runibic/meta.yaml
+++ b/recipes/bioconductor-runibic/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "runibic" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: a1dab58d1c0b9f7eab2bb787dcf09486
+  md5: e67e1067d80c06f72208fca94d7a2e52
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-runibic", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, GEOquery, affy, airway, QUBIC
 # SystemRequirements: C++11, GNU make
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-biclust
     - 'r-rcpp >=0.12.12'
@@ -29,7 +30,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-biclust
     - 'r-rcpp >=0.12.12'
diff --git a/recipes/bioconductor-ruvcorr/meta.yaml b/recipes/bioconductor-ruvcorr/meta.yaml
index ea463f3c08a89..2579d63c4c8d9 100644
--- a/recipes/bioconductor-ruvcorr/meta.yaml
+++ b/recipes/bioconductor-ruvcorr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "RUVcorr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: dcabc6f20ae34007170c74c3687438f0
+  md5: cfc2e185bc7d37f264843a6fa5ed7c6d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ruvcorr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, hgu133a2.db, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-bladderbatch >=1.38.0,<1.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-bladderbatch >=1.40.0,<1.41.0'
     - r-base
     - r-corrplot
     - r-gridextra
@@ -32,8 +33,8 @@ requirements:
     - r-reshape2
     - r-snowfall
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-bladderbatch >=1.38.0,<1.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-bladderbatch >=1.40.0,<1.41.0'
     - r-base
     - r-corrplot
     - r-gridextra
diff --git a/recipes/bioconductor-ruvnormalize/meta.yaml b/recipes/bioconductor-ruvnormalize/meta.yaml
index b4dec3a853f92..7c155c7112009 100644
--- a/recipes/bioconductor-ruvnormalize/meta.yaml
+++ b/recipes/bioconductor-ruvnormalize/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "RUVnormalize" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c1c1270e40710ca88df4cd06f7b83436
+  md5: 2d5d0d40d8720734dee3f8dc437c0756
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ruvnormalize", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-ruvnormalizedata >=1.20.0,<1.21.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-ruvnormalizedata >=1.22.0,<1.23.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-ruvnormalizedata >=1.20.0,<1.21.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-ruvnormalizedata >=1.22.0,<1.23.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-ruvnormalizedata/meta.yaml b/recipes/bioconductor-ruvnormalizedata/meta.yaml
index 84738d3293026..b4d2035842550 100644
--- a/recipes/bioconductor-ruvnormalizedata/meta.yaml
+++ b/recipes/bioconductor-ruvnormalizedata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "RUVnormalizeData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 138ed1f796a9967fce840e1f751769a2
+  md5: 5d7104746a5cac16500870312dd769a6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ruvnormalizedata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ruvnormalizedata/post-link.sh b/recipes/bioconductor-ruvnormalizedata/post-link.sh
index c3960ee3ad193..3d7a877bdd836 100644
--- a/recipes/bioconductor-ruvnormalizedata/post-link.sh
+++ b/recipes/bioconductor-ruvnormalizedata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "ruvnormalizedata-1.20.0"
+installBiocDataPackage.sh "ruvnormalizedata-1.22.0"
diff --git a/recipes/bioconductor-ruvseq/meta.yaml b/recipes/bioconductor-ruvseq/meta.yaml
index c8fc15fd77d19..2f25bffb6074b 100644
--- a/recipes/bioconductor-ruvseq/meta.yaml
+++ b/recipes/bioconductor-ruvseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "RUVSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: da6483e460647efa6a7f5754661e6254
+  md5: eebbc7e6520dc1fb18f5d8f66de7b739
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ruvseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, RColorBrewer, zebrafishRNASeq, DESeq2
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-edaseq >=2.34.0,<2.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-edaseq >=2.36.0,<2.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
     - r-base
     - r-mass
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-edaseq >=2.34.0,<2.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-edaseq >=2.36.0,<2.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
     - r-base
     - r-mass
 test:
diff --git a/recipes/bioconductor-rvisdiff/build.sh b/recipes/bioconductor-rvisdiff/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-rvisdiff/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-rvisdiff/meta.yaml b/recipes/bioconductor-rvisdiff/meta.yaml
new file mode 100644
index 0000000000000..5b328f86ae0db
--- /dev/null
+++ b/recipes/bioconductor-rvisdiff/meta.yaml
@@ -0,0 +1,39 @@
+{% set version = "1.0.0" %}
+{% set name = "Rvisdiff" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 3e3b8ccc9cb71388e2e7c17d60995cbe
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rvisdiff", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: knitr, rmarkdown, DESeq2, limma, SummarizedExperiment, airway, BiocStyle, matrixTests, BiocManager
+requirements:
+  host:
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - r-base
+  run:
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - r-base
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'GPL-2 | GPL-3'
+  summary: 'Interactive Graphs for Differential Expression'
+  description: 'Creates a muti-graph web page which allows the interactive exploration of differential expression results. The graphical web interface presents results as a table which is integrated with five interactive graphs: MA-plot, volcano plot, box plot, lines plot and cluster heatmap. Graphical aspect and information represented in the graphs can be customized by means of user controls. Final graphics can be exported as PNG format.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-rvs/meta.yaml b/recipes/bioconductor-rvs/meta.yaml
index d01234acfc8da..0439a11c2393c 100644
--- a/recipes/bioconductor-rvs/meta.yaml
+++ b/recipes/bioconductor-rvs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "RVS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0c73fd33ebe8620d49b052656faf3988
+  md5: 209870dca9bf6ebc9831014045ddbd42
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rvs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, rmarkdown, BiocStyle, VariantAnnotation
 requirements:
   host:
-    - 'bioconductor-snpstats >=1.50.0,<1.51.0'
+    - 'bioconductor-snpstats >=1.52.0,<1.53.0'
     - r-base
     - r-genlib
     - r-grain
     - r-kinship2
   run:
-    - 'bioconductor-snpstats >=1.50.0,<1.51.0'
+    - 'bioconductor-snpstats >=1.52.0,<1.53.0'
     - r-base
     - r-genlib
     - r-grain
diff --git a/recipes/bioconductor-rwgcod.db/meta.yaml b/recipes/bioconductor-rwgcod.db/meta.yaml
index 59dede08fe2de..0fc2b8cb3aa76 100644
--- a/recipes/bioconductor-rwgcod.db/meta.yaml
+++ b/recipes/bioconductor-rwgcod.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.4.0" %}
 {% set name = "rwgcod.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: c8d2fa81b6f03c4ee629a0883431e5fd
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rwgcod.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.rn.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.rn.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-rwikipathways/meta.yaml b/recipes/bioconductor-rwikipathways/meta.yaml
index 36c370f0c00b4..f038e83886397 100644
--- a/recipes/bioconductor-rwikipathways/meta.yaml
+++ b/recipes/bioconductor-rwikipathways/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.1" %}
 {% set name = "rWikiPathways" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,40 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: bdab499f36c3811aaf36347c445bab3e
+  md5: 4a836092dcb14297a316efeb45de307d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-rwikipathways", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle, knitr, rmarkdown
 requirements:
   host:
     - r-base
     - r-data.table
+    - r-dplyr
     - r-httr
+    - r-lubridate
+    - r-purrr
     - r-rcurl
+    - r-readr
     - r-rjson
+    - r-stringr
     - r-tidyr
     - r-xml
   run:
     - r-base
     - r-data.table
+    - r-dplyr
     - r-httr
+    - r-lubridate
+    - r-purrr
     - r-rcurl
+    - r-readr
     - r-rjson
+    - r-stringr
     - r-tidyr
     - r-xml
 test:
diff --git a/recipes/bioconductor-s4arrays/meta.yaml b/recipes/bioconductor-s4arrays/meta.yaml
index bd3614bd01d98..c70867b22c48d 100644
--- a/recipes/bioconductor-s4arrays/meta.yaml
+++ b/recipes/bioconductor-s4arrays/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.4" %}
+{% set version = "1.2.0" %}
 {% set name = "S4Arrays" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 60786b2573cb89bad3f57e4e9bb1e530
+  md5: c77474b839251d19d31708831de3c1bf
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-s4arrays", max_pin="x.x") }}'
 # Suggests: BiocParallel, SparseArray (>= 0.0.4), DelayedArray, testthat, knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - r-abind
     - r-base
     - r-crayon
     - r-matrix
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - r-abind
     - r-base
     - r-crayon
     - r-matrix
@@ -47,3 +50,6 @@ about:
   summary: 'Foundation of array-like containers in Bioconductor'
   description: 'The S4Arrays package defines the Array virtual class to be extended by other S4 classes that wish to implement a container with an array-like semantic. It also provides: (1) low-level functionality meant to help the developer of such container to implement basic operations like display, subsetting, or coercion of their array-like objects to an ordinary matrix or array, and (2) a framework that facilitates block processing of array-like objects (typically on-disk objects).'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/bioconductor-s4vectors/meta.yaml b/recipes/bioconductor-s4vectors/meta.yaml
index fd70918e733e3..dff5ef1152e05 100644
--- a/recipes/bioconductor-s4vectors/meta.yaml
+++ b/recipes/bioconductor-s4vectors/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.38.1" %}
+{% set version = "0.40.2" %}
 {% set name = "S4Vectors" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 683b1d01ccff0bb1c60087b4cb82f656
+  md5: ee94f4f6c25dcaf7a50f5814495310e3
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-s4vectors", max_pin="x.x") }}'
 # Suggests: IRanges, GenomicRanges, SummarizedExperiment, Matrix, DelayedArray, ShortRead, graph, data.table, RUnit, BiocStyle, knitr
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
   build:
     - {{ compiler('c') }}
@@ -39,6 +40,8 @@ about:
   summary: 'Foundation of vector-like and list-like containers in Bioconductor'
   description: 'The S4Vectors package defines the Vector and List virtual classes and a set of generic functions that extend the semantic of ordinary vectors and lists in R. Package developers can easily implement vector-like or list-like objects as concrete subclasses of Vector or List. In addition, a few low-level concrete subclasses of general interest (e.g. DataFrame, Rle, Factor, and Hits) are implemented in the S4Vectors package itself (many more are implemented in the IRanges package and in other Bioconductor infrastructure packages).'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:s4vectors
     - doi:10.1038/nmeth.3252
diff --git a/recipes/bioconductor-safe/meta.yaml b/recipes/bioconductor-safe/meta.yaml
index b7c5e1e2201ac..628005304fbab 100644
--- a/recipes/bioconductor-safe/meta.yaml
+++ b/recipes/bioconductor-safe/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.40.0" %}
+{% set version = "3.42.0" %}
 {% set name = "safe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 3207c6250626853ac244f56091f6b419
+  md5: 70cc344ddfe65a9d0f3a021c565a1e8e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-safe", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GO.db, PFAM.db, reactome.db, hgu133a.db, breastCancerUPP, survival, foreach, doRNG, Rgraphviz, GOstats
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-sparsem
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-sparsem
 test:
diff --git a/recipes/bioconductor-sagenhaft/meta.yaml b/recipes/bioconductor-sagenhaft/meta.yaml
index 561dd90c5992f..678694684b10b 100644
--- a/recipes/bioconductor-sagenhaft/meta.yaml
+++ b/recipes/bioconductor-sagenhaft/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.70.0" %}
+{% set version = "1.72.0" %}
 {% set name = "sagenhaft" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c383e7a39b428ad34cf8ed33a4ca599f
+  md5: 4f27450a0e98b4f0f7396a784eb0e4e3
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sagenhaft", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-saigegds/meta.yaml b/recipes/bioconductor-saigegds/meta.yaml
index 487a7c010422c..ff7383e3f09cc 100644
--- a/recipes/bioconductor-saigegds/meta.yaml
+++ b/recipes/bioconductor-saigegds/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.0.1" %}
+{% set version = "2.2.0" %}
 {% set name = "SAIGEgds" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0d1a7a33eacf51e2b792ffe48a95a9d8
+  md5: d5792543f5eba866f022723bad21b67e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-saigegds", max_pin="x.x") }}'
 # Suggests: parallel, crayon, CompQuadForm, survey, SNPRelate, RUnit, knitr, markdown, rmarkdown, ggmanh, BiocGenerics
 # SystemRequirements: C++11, GNU make
 requirements:
   host:
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-seqarray >=1.40.0,<1.41.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-seqarray >=1.42.0,<1.43.0'
     - r-base
     - r-matrix
     - r-rcpp
@@ -31,8 +32,8 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-seqarray >=1.40.0,<1.41.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-seqarray >=1.42.0,<1.43.0'
     - r-base
     - r-matrix
     - r-rcpp
diff --git a/recipes/bioconductor-sampleclassifier/meta.yaml b/recipes/bioconductor-sampleclassifier/meta.yaml
index 3ad85e51aa5cc..f2f2a849ce0a0 100644
--- a/recipes/bioconductor-sampleclassifier/meta.yaml
+++ b/recipes/bioconductor-sampleclassifier/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "sampleClassifier" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a2381e59b5ff80cd0f74a56ae644ca25
+  md5: 7f17cc7eb566dcd27148ee400491b6c7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sampleclassifier", max_pin="x.x") }}'
   noarch: generic
 # Suggests: sampleClassifierData, BiocStyle, hgu133a.db, hgu133plus2.db
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-mgfm >=1.34.0,<1.35.0'
-    - 'bioconductor-mgfr >=1.26.0,<1.27.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-mgfm >=1.36.0,<1.37.0'
+    - 'bioconductor-mgfr >=1.28.0,<1.29.0'
     - r-base
     - r-e1071
     - r-ggplot2
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-mgfm >=1.34.0,<1.35.0'
-    - 'bioconductor-mgfr >=1.26.0,<1.27.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-mgfm >=1.36.0,<1.37.0'
+    - 'bioconductor-mgfr >=1.28.0,<1.29.0'
     - r-base
     - r-e1071
     - r-ggplot2
diff --git a/recipes/bioconductor-sampleclassifierdata/meta.yaml b/recipes/bioconductor-sampleclassifierdata/meta.yaml
index 89ea031921117..a1b9746040b66 100644
--- a/recipes/bioconductor-sampleclassifierdata/meta.yaml
+++ b/recipes/bioconductor-sampleclassifierdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "sampleClassifierData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f4b0d64737358fad818a4a1cc71a27c8
+  md5: 941790a92cde9051601206ed162f4151
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sampleclassifierdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-sampleclassifierdata/post-link.sh b/recipes/bioconductor-sampleclassifierdata/post-link.sh
index c6a957c0a883c..9b49079caf80f 100644
--- a/recipes/bioconductor-sampleclassifierdata/post-link.sh
+++ b/recipes/bioconductor-sampleclassifierdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "sampleclassifierdata-1.24.0"
+installBiocDataPackage.sh "sampleclassifierdata-1.26.0"
diff --git a/recipes/bioconductor-samspectral/meta.yaml b/recipes/bioconductor-samspectral/meta.yaml
index 555bf904ed589..54499b23d8f09 100644
--- a/recipes/bioconductor-samspectral/meta.yaml
+++ b/recipes/bioconductor-samspectral/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.54.0" %}
+{% set version = "1.56.0" %}
 {% set name = "SamSPECTRAL" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5c1cee5d6e3e0c2a3792b274772d14eb
+  md5: 2724bc54054c093fac88a672a6b173d6
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-samspectral", max_pin="x.x") }}'
 requirements:
   host:
     - r-base
diff --git a/recipes/bioconductor-sangeranalyser/meta.yaml b/recipes/bioconductor-sangeranalyser/meta.yaml
index 3b1e01b66590c..3b746fd6bf70d 100644
--- a/recipes/bioconductor-sangeranalyser/meta.yaml
+++ b/recipes/bioconductor-sangeranalyser/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "sangeranalyseR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 320b2dd2f4c63054bebd0a4c48dfd488
+  md5: da4a748e4e8a1eaba322abafbd7aedad
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sangeranalyser", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 2.1.0)
 requirements:
   host:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-decipher >=2.28.0,<2.29.0'
-    - 'bioconductor-sangerseqr >=1.36.0,<1.37.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-decipher >=2.30.0,<2.31.0'
+    - 'bioconductor-sangerseqr >=1.38.0,<1.39.0'
     - r-ape
     - r-base
     - r-data.table
@@ -48,10 +49,10 @@ requirements:
     - r-stringr
     - r-zeallot
   run:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-decipher >=2.28.0,<2.29.0'
-    - 'bioconductor-sangerseqr >=1.36.0,<1.37.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-decipher >=2.30.0,<2.31.0'
+    - 'bioconductor-sangerseqr >=1.38.0,<1.39.0'
     - r-ape
     - r-base
     - r-data.table
diff --git a/recipes/bioconductor-sangerseqr/meta.yaml b/recipes/bioconductor-sangerseqr/meta.yaml
index ecac53a019305..adeddccc55773 100644
--- a/recipes/bioconductor-sangerseqr/meta.yaml
+++ b/recipes/bioconductor-sangerseqr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "sangerseqR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c1fd0d600e418cf0e841f7aeb0cc70e0
+  md5: efc55dbe39324b21b62910684962b86b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sangerseqr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - r-shiny
     - r-stringr
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - r-shiny
     - r-stringr
diff --git a/recipes/bioconductor-santa/meta.yaml b/recipes/bioconductor-santa/meta.yaml
index 4c98dae1098bd..5c73501ad8a78 100644
--- a/recipes/bioconductor-santa/meta.yaml
+++ b/recipes/bioconductor-santa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.36.0" %}
+{% set version = "2.38.0" %}
 {% set name = "SANTA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 30c6e9de6ec8283380f691f2f2037378
+  md5: 1b2b87312bb663905abbc444be13a056
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-santa", max_pin="x.x") }}'
 # Suggests: BiocGenerics, BioNet, DLBCL, formatR, knitr, msm, org.Sc.sgd.db, markdown, rmarkdown, RUnit
 requirements:
   host:
diff --git a/recipes/bioconductor-sarc/build.sh b/recipes/bioconductor-sarc/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-sarc/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-sarc/meta.yaml b/recipes/bioconductor-sarc/meta.yaml
new file mode 100644
index 0000000000000..168d1508d39d2
--- /dev/null
+++ b/recipes/bioconductor-sarc/meta.yaml
@@ -0,0 +1,71 @@
+{% set version = "1.0.0" %}
+{% set name = "SARC" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: b3ccd1bbc820bc93c4b13ec4e3ec9705
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sarc", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: knitr, kableExtra, testthat, TxDb.Hsapiens.UCSC.hg38.knownGene, Homo.sapiens, TxDb.Mmusculus.UCSC.mm10.knownGene, Mus.musculus, GenomicAlignments
+requirements:
+  host:
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
+    - 'bioconductor-raggedexperiment >=1.26.0,<1.27.0'
+    - r-base
+    - r-data.table
+    - r-desctools
+    - r-ggplot2
+    - r-gridextra
+    - r-gtable
+    - r-metap
+    - r-plotly
+    - r-rcolorbrewer
+    - r-reshape2
+    - r-scales
+    - r-tidyverse
+  run:
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-plyranges >=1.22.0,<1.23.0'
+    - 'bioconductor-raggedexperiment >=1.26.0,<1.27.0'
+    - r-base
+    - r-data.table
+    - r-desctools
+    - r-ggplot2
+    - r-gridextra
+    - r-gtable
+    - r-metap
+    - r-plotly
+    - r-rcolorbrewer
+    - r-reshape2
+    - r-scales
+    - r-tidyverse
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'Statistical Analysis of Regions with CNVs'
+  description: 'Imports a cov/coverage file (normalised read coverages from BAM files) and a cnv file (list of CNVs - similiar to a BED file) from WES/ WGS CNV (copy number variation) detection pipelines and utilises several metrics to weigh the likelihood of a sample containing a detected CNV being a true CNV or a false positive. Highly useful for diagnostic testing to filter out false positives to provide clinicians with fewer variants to interpret. SARC uniquely only used cov and csv (similiar to BED file) files which are the common CNV pipeline calling filetypes, and can be used as to supplement the Interactive Genome Browser (IGV) to generate many figures automatedly, which can be especially helpful in large cohorts with 100s-1000s of patients.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-sarks/meta.yaml b/recipes/bioconductor-sarks/meta.yaml
index c5a227bf63b65..632d42d45814e 100644
--- a/recipes/bioconductor-sarks/meta.yaml
+++ b/recipes/bioconductor-sarks/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "sarks" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 0c3c63006f7a3850821e4d2bbbcffe77
+  md5: b6fc7553269237bea782582b858aaee5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sarks", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, ggplot2
 # SystemRequirements: Java (>= 1.8)
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-binom
     - r-cluster
     - r-rjava
     - openjdk
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-binom
     - r-cluster
diff --git a/recipes/bioconductor-saturn/meta.yaml b/recipes/bioconductor-saturn/meta.yaml
index 115cb8599eb59..56ea686073d4f 100644
--- a/recipes/bioconductor-saturn/meta.yaml
+++ b/recipes/bioconductor-saturn/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "satuRn" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 89d8bb9ce1b8397fba9a9ded087cd0a6
+  md5: a0826944ab0aee6ff42127fa7eebf43c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-saturn", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, covr, BiocStyle, AnnotationHub, ensembldb, edgeR, DEXSeq, stageR, DelayedArray
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-boot
     - r-ggplot2
@@ -31,9 +32,9 @@ requirements:
     - r-matrix
     - r-pbapply
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-boot
     - r-ggplot2
diff --git a/recipes/bioconductor-saureuscdf/meta.yaml b/recipes/bioconductor-saureuscdf/meta.yaml
index 193995bd07b86..63b9008ca29cf 100644
--- a/recipes/bioconductor-saureuscdf/meta.yaml
+++ b/recipes/bioconductor-saureuscdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "saureuscdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: d01883e4c3dd99f32012e6dbab8cdb8b
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-saureuscdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-saureusprobe/meta.yaml b/recipes/bioconductor-saureusprobe/meta.yaml
index 207987f0e84d0..7346b9ecb2da6 100644
--- a/recipes/bioconductor-saureusprobe/meta.yaml
+++ b/recipes/bioconductor-saureusprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "saureusprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: eb4e91b10a536cbde4ecc08951ddf4d3
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-saureusprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-sbgnview.data/meta.yaml b/recipes/bioconductor-sbgnview.data/meta.yaml
index c96698e9c9057..aba842e7df3b8 100644
--- a/recipes/bioconductor-sbgnview.data/meta.yaml
+++ b/recipes/bioconductor-sbgnview.data/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "SBGNview.data" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ab6acd3a8b3411fcba1cf7ab1bbbd370
+  md5: 7e1bce0dfbc48b3cdc023d88e2ea7d9a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sbgnview.data", max_pin="x.x") }}'
   noarch: generic
 # Suggests: SummarizedExperiment
 requirements:
@@ -31,7 +32,7 @@ requirements:
     - r-knitr
     - r-rmarkdown
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-sbgnview.data/post-link.sh b/recipes/bioconductor-sbgnview.data/post-link.sh
index e1f08a4c01f3d..b736f2bdd3bfd 100644
--- a/recipes/bioconductor-sbgnview.data/post-link.sh
+++ b/recipes/bioconductor-sbgnview.data/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "sbgnview.data-1.14.0"
+installBiocDataPackage.sh "sbgnview.data-1.16.0"
diff --git a/recipes/bioconductor-sbgnview/meta.yaml b/recipes/bioconductor-sbgnview/meta.yaml
index 8f354e0856fdb..8c50f540bbd86 100644
--- a/recipes/bioconductor-sbgnview/meta.yaml
+++ b/recipes/bioconductor-sbgnview/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "SBGNview" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e069957bf05ad05540c11fc90360a2cb
+  md5: 785b51f08ce7b40f23b6e9168ce1d1af
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sbgnview", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, gage
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-pathview >=1.40.0,<1.41.0'
-    - 'bioconductor-sbgnview.data >=1.14.0,<1.15.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-pathview >=1.42.0,<1.43.0'
+    - 'bioconductor-sbgnview.data >=1.16.0,<1.17.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bookdown
     - r-httr
@@ -36,11 +37,11 @@ requirements:
     - r-rsvg
     - r-xml2
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-pathview >=1.40.0,<1.41.0'
-    - 'bioconductor-sbgnview.data >=1.14.0,<1.15.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-pathview >=1.42.0,<1.43.0'
+    - 'bioconductor-sbgnview.data >=1.16.0,<1.17.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bookdown
     - r-httr
diff --git a/recipes/bioconductor-sbmlr/meta.yaml b/recipes/bioconductor-sbmlr/meta.yaml
index 09aed6b74a822..2c7a8f8515985 100644
--- a/recipes/bioconductor-sbmlr/meta.yaml
+++ b/recipes/bioconductor-sbmlr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.96.0" %}
+{% set version = "1.98.0" %}
 {% set name = "SBMLR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4fe40b590e4bfdb241a89787f0475ce7
+  md5: 36433007d11730737942753523a9d91e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sbmlr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rsbml
 requirements:
diff --git a/recipes/bioconductor-sc3/meta.yaml b/recipes/bioconductor-sc3/meta.yaml
index bee00ba007ab8..87691107738fc 100644
--- a/recipes/bioconductor-sc3/meta.yaml
+++ b/recipes/bioconductor-sc3/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.3" %}
+{% set version = "1.30.0" %}
 {% set name = "SC3" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3621e7e5933a11aea8306f53389c85d4
+  md5: c61e14eaf22ab5535ff11763d97e8c96
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sc3", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, mclust, scater, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cluster
     - r-doparallel
@@ -42,10 +43,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cluster
     - r-doparallel
diff --git a/recipes/bioconductor-scale4c/meta.yaml b/recipes/bioconductor-scale4c/meta.yaml
index 46a8eca886c47..114860f5f9880 100644
--- a/recipes/bioconductor-scale4c/meta.yaml
+++ b/recipes/bioconductor-scale4c/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "Scale4C" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 762ef20a76782aaf8526f4e4575b8188
+  md5: 7897932085759a05ad185eaec2afcd13
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scale4c", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-smoothie
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-smoothie
 test:
diff --git a/recipes/bioconductor-scaledmatrix/meta.yaml b/recipes/bioconductor-scaledmatrix/meta.yaml
index 3055cb3574f0e..2c06205107872 100644
--- a/recipes/bioconductor-scaledmatrix/meta.yaml
+++ b/recipes/bioconductor-scaledmatrix/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.1" %}
+{% set version = "1.10.0" %}
 {% set name = "ScaledMatrix" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 259cee9d8c815fc9760fa68a997fd12c
+  md5: 337f2af494241ac5def9fcae4dc12313
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scaledmatrix", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle, knitr, rmarkdown, BiocSingular, DelayedMatrixStats
 requirements:
   host:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-matrix
   run:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-matrix
 test:
diff --git a/recipes/bioconductor-scan.upc/meta.yaml b/recipes/bioconductor-scan.upc/meta.yaml
index 66c8fd0a58c4a..bc6fddb7ec4c6 100644
--- a/recipes/bioconductor-scan.upc/meta.yaml
+++ b/recipes/bioconductor-scan.upc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.42.0" %}
+{% set version = "2.44.0" %}
 {% set name = "SCAN.UPC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ae3e59735107bb06928ac081fa52b308
+  md5: 9da1b69c833d18db111112370bfe15ae
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scan.upc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: pd.hg.u95a
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-affyio >=1.70.0,<1.71.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-affyio >=1.72.0,<1.73.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-foreach
     - r-mass
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-affyio >=1.70.0,<1.71.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-oligo >=1.64.0,<1.65.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-affyio >=1.72.0,<1.73.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-oligo >=1.66.0,<1.67.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-foreach
     - r-mass
diff --git a/recipes/bioconductor-scanmir/meta.yaml b/recipes/bioconductor-scanmir/meta.yaml
index e6d5d8f303248..97c1cf26883e9 100644
--- a/recipes/bioconductor-scanmir/meta.yaml
+++ b/recipes/bioconductor-scanmir/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "scanMiR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 043184d2269eeba5b620b4c97af9f33c
+  md5: a08199f29933bb3b0d1e9336b1b46a76
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scanmir", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cowplot
     - r-data.table
@@ -34,12 +35,12 @@ requirements:
     - r-ggseqlogo
     - r-stringi
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cowplot
     - r-data.table
diff --git a/recipes/bioconductor-scanmirapp/meta.yaml b/recipes/bioconductor-scanmirapp/meta.yaml
index 760d5e52a1240..247186ca2ad89 100644
--- a/recipes/bioconductor-scanmirapp/meta.yaml
+++ b/recipes/bioconductor-scanmirapp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "scanMiRApp" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 396fd2bf8dfcf6fc2a801c5ccaa0e3b0
+  md5: 637ec69edde646093548d190325738fe
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scanmirapp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0), shinytest, BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10, BSgenome.Rnorvegicus.UCSC.rn6
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scanmir >=1.6.0,<1.7.0'
-    - 'bioconductor-scanmirdata >=1.6.0,<1.7.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scanmir >=1.8.0,<1.9.0'
+    - 'bioconductor-scanmirdata >=1.8.0,<1.9.0'
     - r-base
     - r-data.table
     - r-digest
@@ -51,20 +52,20 @@ requirements:
     - r-shinyjqui
     - r-waiter
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scanmir >=1.6.0,<1.7.0'
-    - 'bioconductor-scanmirdata >=1.6.0,<1.7.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scanmir >=1.8.0,<1.9.0'
+    - 'bioconductor-scanmirdata >=1.8.0,<1.9.0'
     - r-base
     - r-data.table
     - r-digest
diff --git a/recipes/bioconductor-scanmirdata/meta.yaml b/recipes/bioconductor-scanmirdata/meta.yaml
index 85e026948f7e0..0deef63b6ab5b 100644
--- a/recipes/bioconductor-scanmirdata/meta.yaml
+++ b/recipes/bioconductor-scanmirdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "scanMiRData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 163f0250a82df0c4fb402b756a3010d7
+  md5: 4c717492a3c85bbcf199873e35190219
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scanmirdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-scanmir >=1.6.0,<1.7.0'
+    - 'bioconductor-scanmir >=1.8.0,<1.9.0'
     - r-base
   run:
-    - 'bioconductor-scanmir >=1.6.0,<1.7.0'
+    - 'bioconductor-scanmir >=1.8.0,<1.9.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-scanmirdata/post-link.sh b/recipes/bioconductor-scanmirdata/post-link.sh
index ef71048d18442..38be41e8fc92c 100644
--- a/recipes/bioconductor-scanmirdata/post-link.sh
+++ b/recipes/bioconductor-scanmirdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "scanmirdata-1.6.0"
+installBiocDataPackage.sh "scanmirdata-1.8.0"
diff --git a/recipes/bioconductor-scannotatr.models/meta.yaml b/recipes/bioconductor-scannotatr.models/meta.yaml
index 5fa07ac9d2496..6f96a2629007b 100644
--- a/recipes/bioconductor-scannotatr.models/meta.yaml
+++ b/recipes/bioconductor-scannotatr.models/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.10" %}
 {% set name = "scAnnotatR.models" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 77c6e16382645164d6413356c5ab52c5
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scannotatr.models", max_pin="x.x") }}'
   noarch: generic
 # Suggests: scAnnotatR, knitr
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-scannotatr/meta.yaml b/recipes/bioconductor-scannotatr/meta.yaml
index 939cb6786b62e..cf184bb7c972c 100644
--- a/recipes/bioconductor-scannotatr/meta.yaml
+++ b/recipes/bioconductor-scannotatr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "scAnnotatR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3f99427ba417fd087195f719f781d499
+  md5: 5474e416000bda50dc8273a09b41a54b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scannotatr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, scRNAseq, testthat
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-ape
     - r-base
     - r-caret
@@ -36,9 +37,9 @@ requirements:
     - r-rocr
     - r-seurat
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-ape
     - r-base
     - r-caret
diff --git a/recipes/bioconductor-scanvis/meta.yaml b/recipes/bioconductor-scanvis/meta.yaml
index 1a5a2a0f2c982..507c7fb6aedb7 100644
--- a/recipes/bioconductor-scanvis/meta.yaml
+++ b/recipes/bioconductor-scanvis/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "SCANVIS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ef9110c213faf5e20efba42cf2d7f3ae
+  md5: 36977f903eb019d8171d60519360cd9e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scanvis", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-plotrix
     - r-rcurl
   run:
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-plotrix
     - r-rcurl
diff --git a/recipes/bioconductor-scarray.sat/meta.yaml b/recipes/bioconductor-scarray.sat/meta.yaml
index d7f2b2408acbb..b1f611aef2382 100644
--- a/recipes/bioconductor-scarray.sat/meta.yaml
+++ b/recipes/bioconductor-scarray.sat/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.2" %}
+{% set version = "1.2.0" %}
 {% set name = "SCArray.sat" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b7e9d968f47394b45250bbfdd798e2a7
+  md5: da0366cd6f3cc83e7acc0a45bf2d2389
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scarray.sat", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, knitr, markdown, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scarray >=1.8.0,<1.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scarray >=1.10.0,<1.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-seurat >=4.0'
     - 'r-seuratobject >=4.0'
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scarray >=1.8.0,<1.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scarray >=1.10.0,<1.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-seurat >=4.0'
     - 'r-seuratobject >=4.0'
diff --git a/recipes/bioconductor-scarray/meta.yaml b/recipes/bioconductor-scarray/meta.yaml
index 141ecd2dc248e..2253c7eb3d251 100644
--- a/recipes/bioconductor-scarray/meta.yaml
+++ b/recipes/bioconductor-scarray/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.2" %}
+{% set version = "1.10.0" %}
 {% set name = "SCArray" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6c456b74aefd2269839c207b8207bb99
+  md5: c777bd1f1f52dd055b83830ed6da1f77
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scarray", max_pin="x.x") }}'
 # Suggests: BiocGenerics, scater, scuttle, uwot, RUnit, knitr, markdown, rmarkdown, rhdf5, HDF5Array
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
   build:
diff --git a/recipes/bioconductor-scatac.explorer/meta.yaml b/recipes/bioconductor-scatac.explorer/meta.yaml
index 988544a3cc48c..dc04d869c90f5 100644
--- a/recipes/bioconductor-scatac.explorer/meta.yaml
+++ b/recipes/bioconductor-scatac.explorer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "scATAC.Explorer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 74c840082c522937d200169fcb963f71
+  md5: 80927899a83bb06d19b0f9800c183b36
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scatac.explorer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - r-data.table
     - r-matrix
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - r-data.table
     - r-matrix
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-scatac.explorer/post-link.sh b/recipes/bioconductor-scatac.explorer/post-link.sh
index 9ae3e68b76fb3..e9ece7245fbbd 100644
--- a/recipes/bioconductor-scatac.explorer/post-link.sh
+++ b/recipes/bioconductor-scatac.explorer/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "scatac.explorer-1.6.0"
+installBiocDataPackage.sh "scatac.explorer-1.8.0"
diff --git a/recipes/bioconductor-scatedata/meta.yaml b/recipes/bioconductor-scatedata/meta.yaml
index 811edf8de2da5..4682d43f3bac4 100644
--- a/recipes/bioconductor-scatedata/meta.yaml
+++ b/recipes/bioconductor-scatedata/meta.yaml
@@ -31,7 +31,7 @@ requirements:
     - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - bioconductor-data-packages >=20230706
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-scater/meta.yaml b/recipes/bioconductor-scater/meta.yaml
index 876940f11b334..06196151e19c6 100644
--- a/recipes/bioconductor-scater/meta.yaml
+++ b/recipes/bioconductor-scater/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.1" %}
 {% set name = "scater" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f90f3937e49253c9abc23e88a0b65b8b
+  md5: c161043392323318c01792e2de828ad5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scater", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BiocStyle, snifter, cowplot, biomaRt, knitr, scRNAseq, robustbase, rmarkdown, testthat, Biobase, scattermore
+# Suggests: BiocStyle, snifter, densvis, cowplot, biomaRt, knitr, scRNAseq, robustbase, rmarkdown, testthat, Biobase, scattermore
 requirements:
   host:
-    - 'bioconductor-beachmat >=2.16.0,<2.17.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-densvis >=1.10.0,<1.11.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggbeeswarm
     - r-ggplot2
@@ -47,18 +47,17 @@ requirements:
     - r-uwot
     - r-viridis
   run:
-    - 'bioconductor-beachmat >=2.16.0,<2.17.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-densvis >=1.10.0,<1.11.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggbeeswarm
     - r-ggplot2
diff --git a/recipes/bioconductor-scatterhatch/meta.yaml b/recipes/bioconductor-scatterhatch/meta.yaml
index b2c98f3629e72..7d4048dd2cdaa 100644
--- a/recipes/bioconductor-scatterhatch/meta.yaml
+++ b/recipes/bioconductor-scatterhatch/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "scatterHatch" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d4e9a2d3f03e6a797fb2e5185083adfb
+  md5: d86cfd4fa0820f65efd6085edc997eed
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scatterhatch", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat
 requirements:
diff --git a/recipes/bioconductor-scbfa/meta.yaml b/recipes/bioconductor-scbfa/meta.yaml
index 18ef2f29a014d..9ab87c6d31b44 100644
--- a/recipes/bioconductor-scbfa/meta.yaml
+++ b/recipes/bioconductor-scbfa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "scBFA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0be803eb4149ba1c7b717bbcc44d5f5d
+  md5: 7729a460da97e96d4da3957b959149db
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scbfa", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, Rtsne
 requirements:
   host:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-zinbwave >=1.22.0,<1.23.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-zinbwave >=1.24.0,<1.25.0'
     - r-base
     - r-copula
     - r-ggplot2
@@ -32,10 +33,10 @@ requirements:
     - r-matrix
     - r-seurat
   run:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-zinbwave >=1.22.0,<1.23.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-zinbwave >=1.24.0,<1.25.0'
     - r-base
     - r-copula
     - r-ggplot2
diff --git a/recipes/bioconductor-scbn/meta.yaml b/recipes/bioconductor-scbn/meta.yaml
index 8fc71321208ce..7da3092848b1b 100644
--- a/recipes/bioconductor-scbn/meta.yaml
+++ b/recipes/bioconductor-scbn/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "SCBN" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9b458b6eb2e4734d08c20d943eb8d591
+  md5: c58ee707d9418bd3374773e2675efad7
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scbn", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr,rmarkdown,BiocStyle,BiocManager
 requirements:
diff --git a/recipes/bioconductor-scbubbletree/meta.yaml b/recipes/bioconductor-scbubbletree/meta.yaml
index 21887483a2ea6..785fc8a629766 100644
--- a/recipes/bioconductor-scbubbletree/meta.yaml
+++ b/recipes/bioconductor-scbubbletree/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "scBubbletree" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 38f21dcba3b6a83f95b6aa770117b5fa
+  md5: d64f38622d8aec6ebb23e81231710134
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scbubbletree", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, testthat, cluster, SingleCellExperiment
 # SystemRequirements: Python (>= 3.6), leidenalg (>= 0.8.2)
 requirements:
   host:
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
     - r-ape
     - r-base
     - r-future
@@ -34,7 +35,7 @@ requirements:
     - r-scales
     - r-seurat
   run:
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
     - r-ape
     - r-base
     - r-future
diff --git a/recipes/bioconductor-sccb2/meta.yaml b/recipes/bioconductor-sccb2/meta.yaml
index 3de70972b457e..50528ac515db8 100644
--- a/recipes/bioconductor-sccb2/meta.yaml
+++ b/recipes/bioconductor-sccb2/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "scCB2" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c89162a3736d26d21f71934c6cfe782e
+  md5: aaa88ac58fbc1b32bfc514cc72109ada
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sccb2", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 2.1.0), KernSmooth, beachmat, knitr, BiocStyle, rmarkdown
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-dropletutils >=1.20.0,<1.21.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-dropletutils >=1.22.0,<1.23.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-doparallel
     - r-foreach
@@ -34,11 +35,11 @@ requirements:
     - r-matrix
     - r-seurat
   run:
-    - 'bioconductor-dropletutils >=1.20.0,<1.21.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-dropletutils >=1.22.0,<1.23.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-doparallel
     - r-foreach
diff --git a/recipes/bioconductor-scclassify/build_failure.linux-64.yaml b/recipes/bioconductor-scclassify/build_failure.linux-64.yaml
new file mode 100644
index 0000000000000..0c17e3a10137a
--- /dev/null
+++ b/recipes/bioconductor-scclassify/build_failure.linux-64.yaml
@@ -0,0 +1,104 @@
+recipe_sha: 5d9ecd6df4ab307246d9923f365939c559cf85122664ccc27d4a9200bf32c6b7  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+log: |2-
+   - r-ggraph
+   - r-ggplot2
+   - bioconductor-biocparallel >=1.36.0,<1.37.0
+   - r-cluster
+   - r-base 4.3.*
+   - r-matrix
+
+  with channels:
+   - file:///opt/host-conda-bld
+   - conda-forge
+   - bioconda
+   - defaults
+
+  The reported errors are:
+  - Encountered problems while solving:
+  -   - nothing provides requested bioconductor-cepo >=1.8.0,<1.9.0
+  -
+
+  Leaving build/test directories:
+    Work:
+   /opt/conda/conda-bld/work
+    Test:
+   /opt/conda/conda-bld/test_tmp
+  Leaving build/test environments:
+    Test:
+  source activate  /opt/conda/conda-bld/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl
+    Build:
+  source activate  /opt/conda/conda-bld/_build_env
+
+
+  Traceback (most recent call last):
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 141, in mamba_get_install_actions
+      solution = solver.solve_for_action(_specs, prefix)
+    File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 244, in solve_for_action
+      t = self.solve(specs)
+    File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 234, in solve
+      raise RuntimeError("Solver could not find solution."  error_string)
+  RuntimeError: Solver could not find solution.Mamba failed to solve:
+   - bioconductor-cepo >=1.8.0,<1.9.0
+   - r-mixtools
+   - r-igraph
+   - r-proxyc
+   - bioconductor-limma >=3.58.0,<3.59.0
+   - r-minpack.lm
+   - r-diptest
+   - r-mgcv
+   - bioconductor-s4vectors >=0.40.0,<0.41.0
+   - r-statmod
+   - bioconductor-hopach >=2.62.0,<2.63.0
+   - r-proxy
+   - r-ggraph
+   - r-ggplot2
+   - bioconductor-biocparallel >=1.36.0,<1.37.0
+   - r-cluster
+   - r-base 4.3.*
+   - r-matrix
+
+  with channels:
+   - file:///opt/host-conda-bld
+   - conda-forge
+   - bioconda
+   - defaults
+
+  The reported errors are:
+  - Encountered problems while solving:
+  -   - nothing provides requested bioconductor-cepo >=1.8.0,<1.9.0
+  -
+
+  During handling of the above exception, another exception occurred:
+
+  Traceback (most recent call last):
+    File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
+      sys.exit(main())
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
+      call_conda_build(action, config)
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
+      result = api.build(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
+      return build_tree(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
+      packages_from_this = build(metadata, stats,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2038, in build
+      output_metas = expand_outputs([(m, need_source_download, need_reparse_in_env)])
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 787, in expand_outputs
+      for (output_dict, m) in deepcopy(_m).get_output_metadata_set(permit_unsatisfiable_variants=False):
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/metadata.py", line 2524, in get_output_metadata_set
+      conda_packages = finalize_outputs_pass(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/metadata.py", line 884, in finalize_outputs_pass
+      fm = finalize_metadata(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 547, in finalize_metadata
+      build_unsat, host_unsat = add_upstream_pins(m,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 409, in add_upstream_pins
+      host_deps, host_unsat, extra_run_specs_from_host = _read_upstream_pin_files(m, 'host',
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 374, in _read_upstream_pin_files
+      deps, actions, unsat = get_env_dependencies(m, env, m.config.variant,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 131, in get_env_dependencies
+      actions = environ.get_install_actions(tmpdir, tuple(dependencies), env,
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 150, in mamba_get_install_actions
+      raise err
+  conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("bioconductor-cepo[version='>=1.8.0,<1.9.0']")}
+# Last 100 lines of the build log.
diff --git a/recipes/bioconductor-scclassify/meta.yaml b/recipes/bioconductor-scclassify/meta.yaml
index b4a37a58ae136..c466f33922a97 100644
--- a/recipes/bioconductor-scclassify/meta.yaml
+++ b/recipes/bioconductor-scclassify/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "scClassify" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4885483f204e79d0dc8b226030c92ec2
+  md5: 6268da69185981088025702610fd424c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scclassify", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, pkgdown
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-cepo >=1.6.0,<1.7.0'
-    - 'bioconductor-hopach >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-cepo >=1.8.0,<1.9.0'
+    - 'bioconductor-hopach >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cluster
     - r-diptest
@@ -40,11 +41,11 @@ requirements:
     - r-proxyc
     - r-statmod
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-cepo >=1.6.0,<1.7.0'
-    - 'bioconductor-hopach >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-cepo >=1.8.0,<1.9.0'
+    - 'bioconductor-hopach >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cluster
     - r-diptest
diff --git a/recipes/bioconductor-sccomp/build_failure.linux-64.yaml b/recipes/bioconductor-sccomp/build_failure.linux-64.yaml
new file mode 100644
index 0000000000000..f18015f5e5ff0
--- /dev/null
+++ b/recipes/bioconductor-sccomp/build_failure.linux-64.yaml
@@ -0,0 +1,6 @@
+recipe_sha: c6c86a551617ab192acea3543c4da0aa9ddee063ff6e7204b82211c508530538  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+reason: |-
+  package r-rstan-2.32.3-r43h884c59f_0 is excluded by strict repo priority
+category: |-
+  dependency issue
diff --git a/recipes/bioconductor-sccomp/build_failure.osx-64.yaml b/recipes/bioconductor-sccomp/build_failure.osx-64.yaml
new file mode 100644
index 0000000000000..2b6541107a2bf
--- /dev/null
+++ b/recipes/bioconductor-sccomp/build_failure.osx-64.yaml
@@ -0,0 +1,7 @@
+recipe_sha: c6c86a551617ab192acea3543c4da0aa9ddee063ff6e7204b82211c508530538  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+reason: |-
+  nothing provides requested r-rstan >=2.26.0
+category: |-
+  dependency issue
+
diff --git a/recipes/bioconductor-sccomp/meta.yaml b/recipes/bioconductor-sccomp/meta.yaml
index c48f9559a8aa2..60929b0dd67fd 100644
--- a/recipes/bioconductor-sccomp/meta.yaml
+++ b/recipes/bioconductor-sccomp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "sccomp" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 583e84778aab5f72817a07565eab2b4c
+  md5: 8a24adb07d155b94645a5f684e1455f6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sccomp", max_pin="x.x") }}'
 # Suggests: BiocStyle, testthat (>= 3.0.0), markdown, knitr, tidyseurat, tidySingleCellExperiment, loo
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - 'r-bh >=1.66.0'
     - r-boot
@@ -39,11 +40,11 @@ requirements:
     - 'r-rcppparallel >=5.0.1'
     - r-readr
     - r-rlang
-    - 'r-rstan >=2.18.1'
+    - 'r-rstan >=2.26.0'
     - 'r-rstantools >=2.1.1'
     - r-scales
     - r-seuratobject
-    - 'r-stanheaders >=2.18.0'
+    - 'r-stanheaders >=2.26.0'
     - r-stringr
     - r-tibble
     - r-tidyr
@@ -51,7 +52,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - 'r-bh >=1.66.0'
     - r-boot
@@ -69,11 +70,11 @@ requirements:
     - 'r-rcppparallel >=5.0.1'
     - r-readr
     - r-rlang
-    - 'r-rstan >=2.18.1'
+    - 'r-rstan >=2.26.0'
     - 'r-rstantools >=2.1.1'
     - r-scales
     - r-seuratobject
-    - 'r-stanheaders >=2.18.0'
+    - 'r-stanheaders >=2.26.0'
     - r-stringr
     - r-tibble
     - r-tidyr
diff --git a/recipes/bioconductor-scdataviz/meta.yaml b/recipes/bioconductor-scdataviz/meta.yaml
index fd5e523561ea4..655232cf0f529 100644
--- a/recipes/bioconductor-scdataviz/meta.yaml
+++ b/recipes/bioconductor-scdataviz/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "scDataviz" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4970752cedf1f045d1c9e71ec15ae69f
+  md5: 71744390661cb39c6c12d920e7861d7f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scdataviz", max_pin="x.x") }}'
   noarch: generic
 # Suggests: PCAtools, cowplot, BiocGenerics, RUnit, knitr, kableExtra, rmarkdown
 requirements:
   host:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - r-corrplot
     - r-ggplot2
@@ -36,9 +37,9 @@ requirements:
     - r-seurat
     - r-umap
   run:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - r-corrplot
     - r-ggplot2
diff --git a/recipes/bioconductor-scdblfinder/meta.yaml b/recipes/bioconductor-scdblfinder/meta.yaml
index c45f71e9d8e46..42aaa31be2a5c 100644
--- a/recipes/bioconductor-scdblfinder/meta.yaml
+++ b/recipes/bioconductor-scdblfinder/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "scDblFinder" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,56 +11,57 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b69060db20baad2947be59b016056069
+  md5: b833caa7cf87c1fb4cf9bf599f750ffa
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scdblfinder", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, scRNAseq, circlize, ComplexHeatmap, ggplot2, dplyr, viridisLite, mbkmeans
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-bluster >=1.10.0,<1.11.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-bluster >=1.12.0,<1.13.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-igraph
     - r-mass
     - r-matrix
     - r-xgboost
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-bluster >=1.10.0,<1.11.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-bluster >=1.12.0,<1.13.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-igraph
     - r-mass
diff --git a/recipes/bioconductor-scdd/meta.yaml b/recipes/bioconductor-scdd/meta.yaml
index 68ccda52d32b3..417177257b74a 100644
--- a/recipes/bioconductor-scdd/meta.yaml
+++ b/recipes/bioconductor-scdd/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "scDD" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0020a2f90b2264d58527a49f0c467b02
+  md5: 3c95209683b09f0584ab315a6fc1e779
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scdd", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, gridExtra
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-ebseq >=1.40.0,<1.41.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-ebseq >=2.0.0,<2.1.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-arm
     - r-base
     - r-fields
@@ -34,12 +35,12 @@ requirements:
     - r-mclust
     - r-outliers
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-ebseq >=1.40.0,<1.41.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-ebseq >=2.0.0,<2.1.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-arm
     - r-base
     - r-fields
diff --git a/recipes/bioconductor-scddboost/meta.yaml b/recipes/bioconductor-scddboost/meta.yaml
index ba0f4ac4f8dfb..5268eed04fe71 100644
--- a/recipes/bioconductor-scddboost/meta.yaml
+++ b/recipes/bioconductor-scddboost/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "scDDboost" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 45a9eceba86f71915cb4f21a233a86f1
+  md5: ac0cac5975ebe4025ea07ad00e132847
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scddboost", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, BiocStyle, testthat
 # SystemRequirements: c++11
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-ebseq >=1.40.0,<1.41.0'
-    - 'bioconductor-oscope >=1.30.0,<1.31.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-ebseq >=2.0.0,<2.1.0'
+    - 'bioconductor-oscope >=1.32.0,<1.33.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bh
     - r-cluster
@@ -36,11 +37,11 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-ebseq >=1.40.0,<1.41.0'
-    - 'bioconductor-oscope >=1.30.0,<1.31.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-ebseq >=2.0.0,<2.1.0'
+    - 'bioconductor-oscope >=1.32.0,<1.33.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bh
     - r-cluster
diff --git a/recipes/bioconductor-scde/meta.yaml b/recipes/bioconductor-scde/meta.yaml
index 738ebdeee2379..f4b90ef2f8f2c 100644
--- a/recipes/bioconductor-scde/meta.yaml
+++ b/recipes/bioconductor-scde/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.28.2" %}
+{% set version = "2.30.0" %}
 {% set name = "scde" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 46139e017c4865f6976c4ffd576f5c33
+  md5: ee4cb04c3a1431fb088d8681ff950d49
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scde", max_pin="x.x") }}'
 # Suggests: knitr, cba, fastcluster, WGCNA, GO.db, org.Hs.eg.db, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
     - r-base
     - r-cairo
     - r-extremes
@@ -40,9 +41,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
     - r-base
     - r-cairo
     - r-extremes
diff --git a/recipes/bioconductor-scdesign3/build.sh b/recipes/bioconductor-scdesign3/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-scdesign3/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-scdesign3/meta.yaml b/recipes/bioconductor-scdesign3/meta.yaml
new file mode 100644
index 0000000000000..a5b20677348d3
--- /dev/null
+++ b/recipes/bioconductor-scdesign3/meta.yaml
@@ -0,0 +1,73 @@
+{% set version = "1.0.0" %}
+{% set name = "scDesign3" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 84c2f07635607b2167f24750f952745a
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scdesign3", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: mvnfast, igraph, knitr, rmarkdown, testthat (>= 3.0.0), RefManageR, sessioninfo, BiocStyle
+requirements:
+  host:
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-dplyr
+    - r-gamlss
+    - r-gamlss.dist
+    - r-ggplot2
+    - r-irlba
+    - r-matrix
+    - r-matrixstats
+    - r-mclust
+    - r-mgcv
+    - r-mvtnorm
+    - r-pbmcapply
+    - r-rvinecopulib
+    - r-tibble
+    - r-umap
+    - r-viridis
+  run:
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-dplyr
+    - r-gamlss
+    - r-gamlss.dist
+    - r-ggplot2
+    - r-irlba
+    - r-matrix
+    - r-matrixstats
+    - r-mclust
+    - r-mgcv
+    - r-mvtnorm
+    - r-pbmcapply
+    - r-rvinecopulib
+    - r-tibble
+    - r-umap
+    - r-viridis
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'MIT + file LICENSE'
+  summary: 'A unified framework of realistic in silico data generation and statistical model inference for single-cell and spatial omics'
+  description: 'We present a statistical simulator, scDesign3, to generate realistic single-cell and spatial omics data, including various cell states, experimental designs, and feature modalities, by learning interpretable parameters from real data. Using a unified probabilistic model for single-cell and spatial omics data, scDesign3 infers biologically meaningful parameters; assesses the goodness-of-fit of inferred cell clusters, trajectories, and spatial locations; and generates in silico negative and positive controls for benchmarking computational tools.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-scds/meta.yaml b/recipes/bioconductor-scds/meta.yaml
index 9eb5e24d3a2a2..58c835c7336f2 100644
--- a/recipes/bioconductor-scds/meta.yaml
+++ b/recipes/bioconductor-scds/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "scds" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 604b9f1136e4d2cfa79cc1ea1776e194
+  md5: df6bd91f4acdd6ea2e54d2f20f632cbf
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scds", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rsvd, Rtsne, scater, cowplot, rmarkdown
 requirements:
   host:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-matrix
     - r-proc
     - r-xgboost
   run:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-matrix
diff --git a/recipes/bioconductor-scfa/meta.yaml b/recipes/bioconductor-scfa/meta.yaml
index 2aa546f1a74e0..1980760f8cd2b 100644
--- a/recipes/bioconductor-scfa/meta.yaml
+++ b/recipes/bioconductor-scfa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "SCFA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c694613f0dc42e223334903db005fcae
+  md5: c4e7d00ff20faff6a8a14eddde8e7a84
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scfa", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-cluster
     - r-coro
@@ -34,7 +35,7 @@ requirements:
     - r-survival
     - 'r-torch >=0.3.0'
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-cluster
     - r-coro
diff --git a/recipes/bioconductor-scfeaturefilter/meta.yaml b/recipes/bioconductor-scfeaturefilter/meta.yaml
index 7dbd32013e28f..ce5324266d06b 100644
--- a/recipes/bioconductor-scfeaturefilter/meta.yaml
+++ b/recipes/bioconductor-scfeaturefilter/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "scFeatureFilter" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2bd744106dbac3e5ea1b17cdc17db357
+  md5: f642025d766eb2cd17f406126e6fe0ba
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scfeaturefilter", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, BiocStyle, SingleCellExperiment, SummarizedExperiment, scRNAseq, cowplot
 requirements:
diff --git a/recipes/bioconductor-scfeatures/meta.yaml b/recipes/bioconductor-scfeatures/meta.yaml
index 2bcef4fd2f796..1b4a39426bc3a 100644
--- a/recipes/bioconductor-scfeatures/meta.yaml
+++ b/recipes/bioconductor-scfeatures/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "scFeatures" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: eaf120744a2b4c979aaf8ef6a0b56179
+  md5: 00b3e1296507cdf60879fd6d112c1e53
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scfeatures", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, S4Vectors, survival, survminer, BiocStyle, ClassifyR, org.Hs.eg.db, clusterProfiler
 requirements:
   host:
-    - 'bioconductor-aucell >=1.22.0,<1.23.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
+    - 'bioconductor-aucell >=1.24.0,<1.25.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
     - 'bioconductor-ensdb.hsapiens.v79 >=2.99.0,<2.100.0'
     - 'bioconductor-ensdb.mmusculus.v79 >=2.99.0,<2.100.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-gsva >=1.48.0,<1.49.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-singlecellsignalr >=1.12.0,<1.13.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-gsva >=1.50.0,<1.51.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-singlecellsignalr >=1.14.0,<1.15.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-ape
     - r-base
     - r-cli
@@ -49,18 +50,18 @@ requirements:
     - r-spatstat.geom
     - r-tidyr
   run:
-    - 'bioconductor-aucell >=1.22.0,<1.23.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
+    - 'bioconductor-aucell >=1.24.0,<1.25.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
     - 'bioconductor-ensdb.hsapiens.v79 >=2.99.0,<2.100.0'
     - 'bioconductor-ensdb.mmusculus.v79 >=2.99.0,<2.100.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-gsva >=1.48.0,<1.49.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-singlecellsignalr >=1.12.0,<1.13.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-gsva >=1.50.0,<1.51.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-singlecellsignalr >=1.14.0,<1.15.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-ape
     - r-base
     - r-cli
diff --git a/recipes/bioconductor-scgps/meta.yaml b/recipes/bioconductor-scgps/meta.yaml
index 64fd1c2a66667..c5ced940c31bd 100644
--- a/recipes/bioconductor-scgps/meta.yaml
+++ b/recipes/bioconductor-scgps/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.1" %}
+{% set version = "1.16.0" %}
 {% set name = "scGPS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5470238c90cb59ccf891bd93de16774c
+  md5: 5d11fe3a4af0d56d3028d97c6090ccfb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scgps", max_pin="x.x") }}'
 # Suggests: Matrix (>= 1.2), testthat, knitr, parallel, rmarkdown, RColorBrewer, ReactomePA, clusterProfiler, cowplot, org.Hs.eg.db, reshape2, xlsx, dendextend, networkD3, Rtsne, BiocParallel, e1071, WGCNA, devtools, DOSE
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-caret >=6.0'
     - r-dplyr
@@ -38,9 +39,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-caret >=6.0'
     - r-dplyr
diff --git a/recipes/bioconductor-schex/meta.yaml b/recipes/bioconductor-schex/meta.yaml
index 540fadf7b9012..c1c3dd9dbf16f 100644
--- a/recipes/bioconductor-schex/meta.yaml
+++ b/recipes/bioconductor-schex/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "schex" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: ed1bc17ff4de0560d1d36821b72b7ca2
+  md5: 5be5dd9c76b2ee49cc894a728b08e2e0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-schex", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ggrepel, knitr, rmarkdown, testthat (>= 2.1.0), covr, TENxPBMCData, scater, shinydashboard, iSEE, igraph, scran
 requirements:
   host:
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - r-cluster
     - r-concaveman
@@ -34,7 +35,7 @@ requirements:
     - r-seurat
     - r-shiny
   run:
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - r-cluster
     - r-concaveman
diff --git a/recipes/bioconductor-schot/meta.yaml b/recipes/bioconductor-schot/meta.yaml
index 40e0dc7962bde..c35c587215b4b 100644
--- a/recipes/bioconductor-schot/meta.yaml
+++ b/recipes/bioconductor-schot/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "scHOT" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 22cc889e9d524a0744ac6477d9e7dac9
+  md5: 75f460d2a6c2d8bee223b64a05eb6224
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-schot", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, markdown, rmarkdown, scater, scattermore, scales, matrixStats, deldir
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggforce
     - r-ggplot2
@@ -33,11 +34,11 @@ requirements:
     - r-matrix
     - r-reshape
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggforce
     - r-ggplot2
diff --git a/recipes/bioconductor-scider/build.sh b/recipes/bioconductor-scider/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-scider/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-scider/meta.yaml b/recipes/bioconductor-scider/meta.yaml
new file mode 100644
index 0000000000000..2dae5324cfcfe
--- /dev/null
+++ b/recipes/bioconductor-scider/meta.yaml
@@ -0,0 +1,69 @@
+{% set version = "1.0.0" %}
+{% set name = "scider" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
+  md5: d20e0e846be7368da2613650b3834957
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scider", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: edgeR, testthat (>= 3.0.0)
+requirements:
+  host:
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-ggplot2
+    - r-igraph
+    - r-isoband
+    - r-janitor
+    - r-knitr
+    - r-lwgeom
+    - r-pheatmap
+    - r-plotly
+    - r-rlang
+    - r-sf
+    - r-shiny
+    - r-spatstat.explore
+    - r-spatstat.geom
+  run:
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-ggplot2
+    - r-igraph
+    - r-isoband
+    - r-janitor
+    - r-knitr
+    - r-lwgeom
+    - r-pheatmap
+    - r-plotly
+    - r-rlang
+    - r-sf
+    - r-shiny
+    - r-spatstat.explore
+    - r-spatstat.geom
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'GPL-3 + file LICENSE'
+  summary: 'Spatial cell-type inter-correlation by density in R'
+  description: 'scider is an user-friendly R package providing functions to model the global density of cells in a slide of spatial transcriptomics data. All functions in the package are built based on the SpatialExperiment object, allowing integration into various spatial transcriptomics-related packages from Bioconductor. After modelling density, the package allows for serveral downstream analysis, including colocalization analysis, boundary detection analysis and differential density analysis.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-scifer/meta.yaml b/recipes/bioconductor-scifer/meta.yaml
index 58e0dc58589ef..6f53163b0a43b 100644
--- a/recipes/bioconductor-scifer/meta.yaml
+++ b/recipes/bioconductor-scifer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "scifer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: e39ab9c9a71dd10992aedf09000f9848
+  md5: 82fb184bec0c09d5f7067baf81f8fee1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scifer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: fs, BiocStyle, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-decipher >=2.28.0,<2.29.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-sangerseqr >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-decipher >=2.30.0,<2.31.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-sangerseqr >=1.38.0,<1.39.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -39,10 +40,10 @@ requirements:
     - r-stringr
     - r-tibble
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-decipher >=2.28.0,<2.29.0'
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
-    - 'bioconductor-sangerseqr >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-decipher >=2.30.0,<2.31.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
+    - 'bioconductor-sangerseqr >=1.38.0,<1.39.0'
     - r-base
     - r-data.table
     - r-dplyr
diff --git a/recipes/bioconductor-sclcbam/meta.yaml b/recipes/bioconductor-sclcbam/meta.yaml
index 407bca15aae77..974fda737ce12 100644
--- a/recipes/bioconductor-sclcbam/meta.yaml
+++ b/recipes/bioconductor-sclcbam/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "SCLCBam" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ca48c42a5e16460f72eb8bfbc697258f
+  md5: 660f11c1751b54cc942e91045884bfe6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sclcbam", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-sclcbam/post-link.sh b/recipes/bioconductor-sclcbam/post-link.sh
index bb942bfa1cea4..ebe08391743a4 100644
--- a/recipes/bioconductor-sclcbam/post-link.sh
+++ b/recipes/bioconductor-sclcbam/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "sclcbam-1.32.0"
+installBiocDataPackage.sh "sclcbam-1.34.0"
diff --git a/recipes/bioconductor-scmap/meta.yaml b/recipes/bioconductor-scmap/meta.yaml
index 931d39e162095..747a349f39a63 100644
--- a/recipes/bioconductor-scmap/meta.yaml
+++ b/recipes/bioconductor-scmap/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.3" %}
+{% set version = "1.24.0" %}
 {% set name = "scmap" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: a58a3a176f62d952dcd685a9027459bf
+  md5: de159d16de109a02a1c7cb3c85418b58
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scmap", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-e1071
@@ -39,11 +40,11 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-e1071
diff --git a/recipes/bioconductor-scmerge/meta.yaml b/recipes/bioconductor-scmerge/meta.yaml
index 8387100c27930..e33892f3dba5d 100644
--- a/recipes/bioconductor-scmerge/meta.yaml
+++ b/recipes/bioconductor-scmerge/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "scMerge" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cee90634720dffc0c35a55bb3b6cb95b
+  md5: d5b285890500ad5c781d33ab45282aca
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scmerge", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, covr, HDF5Array, knitr, Matrix, rmarkdown, scales, proxy, testthat, badger
 requirements:
   host:
-    - 'bioconductor-batchelor >=1.16.0,<1.17.0'
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-m3drop >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-batchelor >=1.18.0,<1.19.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-m3drop >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cluster
     - r-cvtools
@@ -41,18 +42,18 @@ requirements:
     - r-proxyc
     - r-ruv
   run:
-    - 'bioconductor-batchelor >=1.16.0,<1.17.0'
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-m3drop >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-batchelor >=1.18.0,<1.19.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-m3drop >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cluster
     - r-cvtools
diff --git a/recipes/bioconductor-scmet/meta.yaml b/recipes/bioconductor-scmet/meta.yaml
index c8f7b35e4d3a1..9a2d2fce9889a 100644
--- a/recipes/bioconductor-scmet/meta.yaml
+++ b/recipes/bioconductor-scmet/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "scMET" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9ade04cb98f2b5a74bdab738295cfabb
+  md5: 6420a2af7464f67eb676f06d20f9d5a6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scmet", max_pin="x.x") }}'
 # Suggests: testthat, knitr, rmarkdown
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - 'r-bh >=1.66.0'
@@ -48,10 +49,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - 'r-bh >=1.66.0'
diff --git a/recipes/bioconductor-scmeth/meta.yaml b/recipes/bioconductor-scmeth/meta.yaml
index 4502f17020d8e..97b16204b19f5 100644
--- a/recipes/bioconductor-scmeth/meta.yaml
+++ b/recipes/bioconductor-scmeth/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "scmeth" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,42 +11,43 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f3e27676cdd8c4eda10fd5004329a574
+  md5: 52beac81d58da27e01cc5e1a0b6584b2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scmeth", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Mmusculus.UCSC.mm10, BSgenome.Hsapiens.NCBI.GRCh38, TxDb.Hsapiens.UCSC.hg38.knownGene, org.Hs.eg.db, Biobase, BiocGenerics, ggplot2, ggthemes
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-annotatr >=1.26.0,<1.27.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-bsseq >=1.36.0,<1.37.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-annotatr >=1.28.0,<1.29.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-bsseq >=1.38.0,<1.39.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dt
     - r-knitr
     - r-reshape2
     - r-rmarkdown
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-annotatr >=1.26.0,<1.27.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-bsseq >=1.36.0,<1.37.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-annotatr >=1.28.0,<1.29.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-bsseq >=1.38.0,<1.39.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dt
     - r-knitr
diff --git a/recipes/bioconductor-scmultiome/build_failure.linux-64.yaml b/recipes/bioconductor-scmultiome/build_failure.linux-64.yaml
new file mode 100644
index 0000000000000..3225ddc538d53
--- /dev/null
+++ b/recipes/bioconductor-scmultiome/build_failure.linux-64.yaml
@@ -0,0 +1,106 @@
+recipe_sha: 6724b9796e501ce375d77f605eb535671bf9bee68ee4a9d1873f64c6432b2905  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+category: |-
+  dependency issue
+log: |2-
+   - bioconductor-genomicranges >=1.52.0,<1.53.0
+   - r-base 4.3.*
+   - bioconductor-multiassayexperiment >=1.26.0,<1.27.0
+   - bioconductor-experimenthub >=2.8.0,<2.9.0
+   - bioconductor-s4vectors >=0.38.0,<0.39.0
+   - r-checkmate
+   - bioconductor-hdf5array >=1.28.0,<1.29.0
+   - bioconductor-singlecellexperiment >=1.22.0,<1.23.0
+   - bioconductor-delayedarray >=0.26.0,<0.27.0
+   - bioconductor-rhdf5 >=2.44.0,<2.45.0
+   - bioconductor-annotationhub >=3.8.0,<3.9.0
+   - bioconductor-summarizedexperiment >=1.30.0,<1.31.0
+   - r-azurestor
+
+  with channels:
+   - conda-forge
+   - bioconda
+   - defaults
+
+  The reported errors are:
+  - Encountered problems while solving:
+  -   - nothing provides requested r-azurestor
+  -
+
+  Leaving build/test directories:
+    Work:
+   /opt/conda/conda-bld/work
+    Test:
+   /opt/conda/conda-bld/test_tmp
+  Leaving build/test environments:
+    Test:
+  source activate  /opt/conda/conda-bld/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl
+    Build:
+  source activate  /opt/conda/conda-bld/_build_env
+
+
+  Traceback (most recent call last):
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 141, in mamba_get_install_actions
+      solution = solver.solve_for_action(_specs, prefix)
+    File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 244, in solve_for_action
+      t = self.solve(specs)
+    File "/opt/conda/lib/python3.8/site-packages/boa/core/solver.py", line 234, in solve
+      raise RuntimeError("Solver could not find solution."  error_string)
+  RuntimeError: Solver could not find solution.Mamba failed to solve:
+   - bioconductor-genomicranges >=1.52.0,<1.53.0
+   - r-base 4.3.*
+   - bioconductor-multiassayexperiment >=1.26.0,<1.27.0
+   - bioconductor-experimenthub >=2.8.0,<2.9.0
+   - bioconductor-s4vectors >=0.38.0,<0.39.0
+   - r-checkmate
+   - bioconductor-hdf5array >=1.28.0,<1.29.0
+   - bioconductor-singlecellexperiment >=1.22.0,<1.23.0
+   - bioconductor-delayedarray >=0.26.0,<0.27.0
+   - bioconductor-rhdf5 >=2.44.0,<2.45.0
+   - bioconductor-annotationhub >=3.8.0,<3.9.0
+   - bioconductor-summarizedexperiment >=1.30.0,<1.31.0
+   - r-azurestor
+
+  with channels:
+   - conda-forge
+   - bioconda
+   - defaults
+
+  The reported errors are:
+  - Encountered problems while solving:
+  -   - nothing provides requested r-azurestor
+  -
+
+  During handling of the above exception, another exception occurred:
+
+  Traceback (most recent call last):
+    File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
+      sys.exit(main())
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
+      call_conda_build(action, config)
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
+      result = api.build(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
+      return build_tree(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
+      packages_from_this = build(metadata, stats,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2038, in build
+      output_metas = expand_outputs([(m, need_source_download, need_reparse_in_env)])
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 787, in expand_outputs
+      for (output_dict, m) in deepcopy(_m).get_output_metadata_set(permit_unsatisfiable_variants=False):
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/metadata.py", line 2524, in get_output_metadata_set
+      conda_packages = finalize_outputs_pass(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/metadata.py", line 884, in finalize_outputs_pass
+      fm = finalize_metadata(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 547, in finalize_metadata
+      build_unsat, host_unsat = add_upstream_pins(m,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 409, in add_upstream_pins
+      host_deps, host_unsat, extra_run_specs_from_host = _read_upstream_pin_files(m, 'host',
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 374, in _read_upstream_pin_files
+      deps, actions, unsat = get_env_dependencies(m, env, m.config.variant,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/render.py", line 131, in get_env_dependencies
+      actions = environ.get_install_actions(tmpdir, tuple(dependencies), env,
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 150, in mamba_get_install_actions
+      raise err
+  conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("r-azurestor")}
+# Last 100 lines of the build log.
diff --git a/recipes/bioconductor-scmultiome/meta.yaml b/recipes/bioconductor-scmultiome/meta.yaml
index 4439589f6fb34..eaa4577ecd304 100644
--- a/recipes/bioconductor-scmultiome/meta.yaml
+++ b/recipes/bioconductor-scmultiome/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "scMultiome" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,45 +11,46 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 22aceaa129afbecd400b2d16b6333d43
+  md5: db13145ffc5eb5430eee8ac7212e1b7d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scmultiome", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, IRanges, Matrix, knitr, rmarkdown, rstudioapi, testthat (>= 3.0.0), devtools, BiocStyle, ExperimentHubData
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-azurestor
     - r-base
     - r-checkmate
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-azurestor
     - r-base
     - r-checkmate
     - curl
-    - bioconductor-data-packages >=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-scmultiome/post-link.sh b/recipes/bioconductor-scmultiome/post-link.sh
index 3ce950ad4ac67..1324e5cb2e2c7 100644
--- a/recipes/bioconductor-scmultiome/post-link.sh
+++ b/recipes/bioconductor-scmultiome/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "scmultiome-1.0.0"
+installBiocDataPackage.sh "scmultiome-1.2.0"
diff --git a/recipes/bioconductor-scnorm/meta.yaml b/recipes/bioconductor-scnorm/meta.yaml
index b9547849c0a78..c4058c473a397 100644
--- a/recipes/bioconductor-scnorm/meta.yaml
+++ b/recipes/bioconductor-scnorm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "SCnorm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5901d07a8f6feacfef451fc204de8eed
+  md5: cfac086eb57336e865c999c4c0b42a0c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scnorm", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, devtools
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cluster
     - r-data.table
@@ -34,11 +35,11 @@ requirements:
     - r-moments
     - r-quantreg
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cluster
     - r-data.table
diff --git a/recipes/bioconductor-scone/meta.yaml b/recipes/bioconductor-scone/meta.yaml
index 7dbfa2a2f2363..07e654e223342 100644
--- a/recipes/bioconductor-scone/meta.yaml
+++ b/recipes/bioconductor-scone/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "scone" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 03ca7a497be498bc8ba6ff313d121434
+  md5: 0e7dd77999fc8cbf842fee6452c82a1b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scone", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, DT, ggplot2, knitr, miniUI, NMF, plotly, reshape2, rmarkdown, scran, scRNAseq, shiny, testthat, visNetwork, doParallel, batchtools, splatter, scater, kableExtra, mclust, TENxPBMCData
 requirements:
   host:
-    - 'bioconductor-aroma.light >=3.30.0,<3.31.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-ruvseq >=1.34.0,<1.35.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-aroma.light >=3.32.0,<3.33.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-ruvseq >=1.36.0,<1.37.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-boot
     - r-class
@@ -44,15 +45,15 @@ requirements:
     - r-rarpack
     - r-rcolorbrewer
   run:
-    - 'bioconductor-aroma.light >=3.30.0,<3.31.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-ruvseq >=1.34.0,<1.35.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-aroma.light >=3.32.0,<3.33.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-ruvseq >=1.36.0,<1.37.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-boot
     - r-class
diff --git a/recipes/bioconductor-sconify/meta.yaml b/recipes/bioconductor-sconify/meta.yaml
index 26161eee8cbc4..c166731eb09ff 100644
--- a/recipes/bioconductor-sconify/meta.yaml
+++ b/recipes/bioconductor-sconify/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "Sconify" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 730ac89643009501cab5346657dfe4a8
+  md5: 61762bc5d7e8560ae818942a21da33a5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sconify", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-dplyr
     - r-fnn
@@ -31,7 +32,7 @@ requirements:
     - r-rtsne
     - r-tibble
   run:
-    - 'bioconductor-flowcore >=2.12.0,<2.13.0'
+    - 'bioconductor-flowcore >=2.14.0,<2.15.0'
     - r-base
     - r-dplyr
     - r-fnn
diff --git a/recipes/bioconductor-scope/meta.yaml b/recipes/bioconductor-scope/meta.yaml
index a631ec984b3ab..3943cc3b77751 100644
--- a/recipes/bioconductor-scope/meta.yaml
+++ b/recipes/bioconductor-scope/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "SCOPE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a727431edb54a52f5618b8273c73be24
+  md5: b8e4ce76717f217322282d378de1b3bd
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scope", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, WGSmapp, BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10, testthat (>= 2.1.0)
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-desctools
     - r-doparallel
@@ -38,16 +39,16 @@ requirements:
     - r-gplots
     - r-rcolorbrewer
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-desctools
     - r-doparallel
diff --git a/recipes/bioconductor-scoreinvhap/meta.yaml b/recipes/bioconductor-scoreinvhap/meta.yaml
index a0e7f0f0f7dc2..2ce9837a52775 100644
--- a/recipes/bioconductor-scoreinvhap/meta.yaml
+++ b/recipes/bioconductor-scoreinvhap/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "scoreInvHap" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3acda727fc5294ab60fa6badf682b337
+  md5: 7505f8161571dcc7b9b752fc62dedce5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scoreinvhap", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, BiocStyle, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-snpstats >=1.50.0,<1.51.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-snpstats >=1.52.0,<1.53.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-snpstats >=1.50.0,<1.51.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-snpstats >=1.52.0,<1.53.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-scp/meta.yaml b/recipes/bioconductor-scp/meta.yaml
index 914e612750fe1..c349acb3dacba 100644
--- a/recipes/bioconductor-scp/meta.yaml
+++ b/recipes/bioconductor-scp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.1" %}
+{% set version = "1.12.0" %}
 {% set name = "scp" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f16e9ca95ef9a6ff5df7dd223533d987
+  md5: c4f759cfb996e6150ecec65b7de3e343
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scp", max_pin="x.x") }}'
   noarch: generic
-# Suggests: testthat, knitr, BiocStyle, rmarkdown, patchwork, ggplot2, impute, scater, sva, preprocessCore, vsn, uwot
+# Suggests: scpdata, testthat, knitr, BiocStyle, rmarkdown, ggplot2, patchwork, impute, scater, sva, preprocessCore, vsn, uwot
 requirements:
   host:
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-qfeatures >=1.10.0,<1.11.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-qfeatures >=1.12.0,<1.13.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-magrittr
     - r-matrixstats
   run:
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-qfeatures >=1.10.0,<1.11.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-qfeatures >=1.12.0,<1.13.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-magrittr
diff --git a/recipes/bioconductor-scpca/meta.yaml b/recipes/bioconductor-scpca/meta.yaml
index 0d8b6478fc46d..61a413188a29a 100644
--- a/recipes/bioconductor-scpca/meta.yaml
+++ b/recipes/bioconductor-scpca/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "scPCA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 573b440af9c8058ea71852420c36c695
+  md5: e7058ad8f079f25d21ae55911652d01d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scpca", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DelayedMatrixStats, sparseMatrixStats, testthat (>= 2.1.0), covr, knitr, rmarkdown, BiocStyle, ggplot2, ggpubr, splatter, SingleCellExperiment, microbenchmark
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-scaledmatrix >=1.8.0,<1.9.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-scaledmatrix >=1.10.0,<1.11.0'
     - r-assertthat
     - r-base
     - r-cluster
@@ -42,10 +43,10 @@ requirements:
     - r-stringr
     - r-tibble
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-scaledmatrix >=1.8.0,<1.9.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-scaledmatrix >=1.10.0,<1.11.0'
     - r-assertthat
     - r-base
     - r-cluster
diff --git a/recipes/bioconductor-scpdata/meta.yaml b/recipes/bioconductor-scpdata/meta.yaml
index 8d5a56ba0bbb4..cf133817eeedf 100644
--- a/recipes/bioconductor-scpdata/meta.yaml
+++ b/recipes/bioconductor-scpdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "scpdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 0a00beb40a6ae72de0364698c7a0129b
+  md5: eac9eae58fe9297359188c45a3dabd1f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scpdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: scp, magrittr, dplyr, knitr, BiocStyle, BiocCheck, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-qfeatures >=1.10.0,<1.11.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-qfeatures >=1.12.0,<1.13.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-qfeatures >=1.10.0,<1.11.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-qfeatures >=1.12.0,<1.13.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-scpdata/post-link.sh b/recipes/bioconductor-scpdata/post-link.sh
index 25f2c1ee4adfb..6e55327fbf91f 100644
--- a/recipes/bioconductor-scpdata/post-link.sh
+++ b/recipes/bioconductor-scpdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "scpdata-1.8.0"
+installBiocDataPackage.sh "scpdata-1.10.0"
diff --git a/recipes/bioconductor-scpipe/meta.yaml b/recipes/bioconductor-scpipe/meta.yaml
index 0b0bb5c2db301..9efcbe7c1cace 100644
--- a/recipes/bioconductor-scpipe/meta.yaml
+++ b/recipes/bioconductor-scpipe/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.0.0" %}
+{% set version = "2.2.0" %}
 {% set name = "scPipe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,37 +11,38 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 460d566decff05a6ed6c304b1aa2a9ee
+  md5: 477ce2b2da9cc1ae5365c3140d6ed566
 build:
   skip: True  # [osx]
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scpipe", max_pin="x.x") }}'
 # Suggests: BiocStyle, DT, GenomicFeatures, grid, igraph, kableExtra, knitr, locStra, plotly, rmarkdown, RColorBrewer, readr, reshape2, RANN, shiny, scater (>= 1.11.0), testthat, xml2, umap
 # SystemRequirements: C++11, GNU make
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-dropletutils >=1.20.0,<1.21.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rsubread >=2.14.0,<2.15.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-dropletutils >=1.22.0,<1.23.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rsubread >=2.16.0,<2.17.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -65,29 +66,30 @@ requirements:
     - r-testthat
     - r-tibble
     - r-tidyr
+    - 'r-vctrs >=0.5.2'
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-dropletutils >=1.20.0,<1.21.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rsubread >=2.14.0,<2.15.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-dropletutils >=1.22.0,<1.23.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rsubread >=2.16.0,<2.17.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -111,6 +113,7 @@ requirements:
     - r-testthat
     - r-tibble
     - r-tidyr
+    - 'r-vctrs >=0.5.2'
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
diff --git a/recipes/bioconductor-scran/meta.yaml b/recipes/bioconductor-scran/meta.yaml
index 9bff44d2d9e10..e1341546092cc 100644
--- a/recipes/bioconductor-scran/meta.yaml
+++ b/recipes/bioconductor-scran/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.1" %}
+{% set version = "1.30.0" %}
 {% set name = "scran" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 46f41388ff6b8b0928f012dbf1e962fd
+  md5: f8cc4c59dde80171927b115dc09592af
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scran", max_pin="x.x") }}'
 # Suggests: testthat, BiocStyle, knitr, rmarkdown, HDF5Array, scRNAseq, dynamicTreeCut, ResidualMatrix, ScaledMatrix, DESeq2, monocle, Biobase, pheatmap, scater
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-beachmat >=2.16.0,<2.17.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-bluster >=1.10.0,<1.11.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-metapod >=1.8.0,<1.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-bluster >=1.12.0,<1.13.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-metapod >=1.10.0,<1.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bh
     - r-dqrng
@@ -45,20 +46,20 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-beachmat >=2.16.0,<2.17.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-bluster >=1.10.0,<1.11.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-metapod >=1.8.0,<1.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-bluster >=1.12.0,<1.13.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-metapod >=1.10.0,<1.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bh
     - r-dqrng
diff --git a/recipes/bioconductor-screclassify/meta.yaml b/recipes/bioconductor-screclassify/meta.yaml
index a8888b9ef13c0..6ab9c50202c44 100644
--- a/recipes/bioconductor-screclassify/meta.yaml
+++ b/recipes/bioconductor-screclassify/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "scReClassify" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0b0b6ffa809d9b206a9eecf23e3d4b23
+  md5: 722bce944db1f380df35d68a47c4bef7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-screclassify", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, BiocStyle, rmarkdown, DT, mclust, dplyr
 requirements:
   host:
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-e1071
     - r-randomforest
   run:
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-e1071
     - r-randomforest
diff --git a/recipes/bioconductor-screcover/meta.yaml b/recipes/bioconductor-screcover/meta.yaml
index bfb98c8972abd..f0024c38fdf5e 100644
--- a/recipes/bioconductor-screcover/meta.yaml
+++ b/recipes/bioconductor-screcover/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "scRecover" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b621333aa197e50352b5e297092ab2bb
+  md5: ebdc203b50818397a1856fdce417f10e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-screcover", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, SingleCellExperiment, testthat
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - 'r-bbmle >=1.0.18'
     - r-doparallel
@@ -36,7 +37,7 @@ requirements:
     - r-rsvd
     - 'r-saver >=1.1.1'
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - 'r-bbmle >=1.0.18'
     - r-doparallel
diff --git a/recipes/bioconductor-screencounter/meta.yaml b/recipes/bioconductor-screencounter/meta.yaml
index 05d9fc3635670..d706b51cee9f4 100644
--- a/recipes/bioconductor-screencounter/meta.yaml
+++ b/recipes/bioconductor-screencounter/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.1" %}
+{% set version = "1.2.0" %}
 {% set name = "screenCounter" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5865a3dafb6a822adc5831b3c1fad028
+  md5: 35bb89fb63853645e76facfc72e77522
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
-# Suggests: Biostrings, BiocStyle, knitr, rmarkdown, testthat
-# SystemRequirements: C++17
+  run_exports: '{{ pin_subpackage("bioconductor-screencounter", max_pin="x.x") }}'
+# Suggests: BiocGenerics, Biostrings, BiocStyle, knitr, rmarkdown, testthat
+# SystemRequirements: C++17, GNU make
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-rcpp
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-rcpp
   build:
diff --git a/recipes/bioconductor-screenr/meta.yaml b/recipes/bioconductor-screenr/meta.yaml
index 46671016ada11..34203b1646f65 100644
--- a/recipes/bioconductor-screenr/meta.yaml
+++ b/recipes/bioconductor-screenr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "ScreenR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 07fa63df60f427c8bacc15777075f113
+  md5: bb8bd3276b17f7e0d63de9c19e64473d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-screenr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown (>= 2.11), knitr (>= 1.37), testthat (>= 3.0.0), BiocStyle (>= 2.22.0), covr (>= 3.5)
 requirements:
   host:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - 'r-dplyr >=1.0'
     - 'r-ggplot2 >=3.3'
@@ -37,8 +38,8 @@ requirements:
     - 'r-tidyr >=1.2'
     - 'r-tidyselect >=1.1.2'
   run:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - 'r-dplyr >=1.0'
     - 'r-ggplot2 >=3.3'
diff --git a/recipes/bioconductor-screpertoire/meta.yaml b/recipes/bioconductor-screpertoire/meta.yaml
index 9b5a1b165f172..e423553bb5630 100644
--- a/recipes/bioconductor-screpertoire/meta.yaml
+++ b/recipes/bioconductor-screpertoire/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "scRepertoire" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1d64c8e5caff50abe3de5ddf47f49598
+  md5: 3debd173702ebe6c551ba6c572a76c25
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-screpertoire", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, circlize, scales, Seurat, scater
 requirements:
   host:
-    - 'bioconductor-powertcr >=1.20.0,<1.21.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-powertcr >=1.22.0,<1.23.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-doparallel
     - r-dplyr
@@ -40,9 +41,9 @@ requirements:
     - r-tidygraph
     - r-vegan
   run:
-    - 'bioconductor-powertcr >=1.20.0,<1.21.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-powertcr >=1.22.0,<1.23.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-doparallel
     - r-dplyr
diff --git a/recipes/bioconductor-scrnaseq/meta.yaml b/recipes/bioconductor-scrnaseq/meta.yaml
index 5fe75ed603bb6..8ac4a0edce522 100644
--- a/recipes/bioconductor-scrnaseq/meta.yaml
+++ b/recipes/bioconductor-scrnaseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.14.0" %}
+{% set version = "2.16.0" %}
 {% set name = "scRNAseq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,41 +11,42 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3adccc738839605191c0eda859e3d7c7
+  md5: 55196cb10876aa15733c6a29ffc38100
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scrnaseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, BiocFileCache, testthat, rappdirs, tools
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-scrnaseq/post-link.sh b/recipes/bioconductor-scrnaseq/post-link.sh
index 95c672ef7f73a..25b040d1f3d7a 100644
--- a/recipes/bioconductor-scrnaseq/post-link.sh
+++ b/recipes/bioconductor-scrnaseq/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "scrnaseq-2.14.0"
+installBiocDataPackage.sh "scrnaseq-2.16.0"
diff --git a/recipes/bioconductor-scrnaseqapp/meta.yaml b/recipes/bioconductor-scrnaseqapp/meta.yaml
index cb79acb7eff21..d31492b6be478 100644
--- a/recipes/bioconductor-scrnaseqapp/meta.yaml
+++ b/recipes/bioconductor-scrnaseqapp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.1" %}
+{% set version = "1.2.2" %}
 {% set name = "scRNAseqApp" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 831fc1f4ceb49cfe0182b5c22312521f
+  md5: a9b64e980a9e0acef5ab93a44a35e124
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scrnaseqapp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, knitr, testthat, BiocStyle
 requirements:
   host:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-slingshot >=2.8.0,<2.9.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-slingshot >=2.10.0,<2.11.0'
     - r-base
     - r-bibtex
     - r-bslib
@@ -57,18 +58,19 @@ requirements:
     - r-shiny
     - r-shinyhelper
     - r-shinymanager
+    - r-sortable
     - r-xfun
     - r-xml2
   run:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-slingshot >=2.8.0,<2.9.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-slingshot >=2.10.0,<2.11.0'
     - r-base
     - r-bibtex
     - r-bslib
@@ -96,6 +98,7 @@ requirements:
     - r-shiny
     - r-shinyhelper
     - r-shinymanager
+    - r-sortable
     - r-xfun
     - r-xml2
 test:
diff --git a/recipes/bioconductor-scruff/meta.yaml b/recipes/bioconductor-scruff/meta.yaml
index 0c226e6bef9eb..51177f8c27686 100644
--- a/recipes/bioconductor-scruff/meta.yaml
+++ b/recipes/bioconductor-scruff/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "scruff" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,60 +11,63 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: bad66b3a487c31db11e46744295fb017
+  md5: cd21598690887291d1540e0a827fb6cc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scruff", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rsubread >=2.14.0,<2.15.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rsubread >=2.16.0,<2.17.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-ggplot2
     - r-ggthemes
+    - r-parallelly
     - r-plyr
     - r-scales
     - r-stringdist
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rsubread >=2.14.0,<2.15.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rsubread >=2.16.0,<2.17.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-ggplot2
     - r-ggthemes
+    - r-parallelly
     - r-plyr
     - r-scales
     - r-stringdist
diff --git a/recipes/bioconductor-scry/meta.yaml b/recipes/bioconductor-scry/meta.yaml
index b979189a9b8a4..741c3bb267ea5 100644
--- a/recipes/bioconductor-scry/meta.yaml
+++ b/recipes/bioconductor-scry/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "scry" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 6887e89a51b1ea222901e82c6ae9c98b
+  md5: dbdcf37d35f52ba787d1d8d5f21e886e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scry", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, covr, DuoClustering2018, ggplot2, HDF5Array, knitr, markdown, rmarkdown, TENxPBMCData, testthat
 requirements:
   host:
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-glmpca >=0.2.0'
     - r-matrix
   run:
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-glmpca >=0.2.0'
     - r-matrix
diff --git a/recipes/bioconductor-scshapes/meta.yaml b/recipes/bioconductor-scshapes/meta.yaml
index 922a38b33bcd6..d12d4297ae966 100644
--- a/recipes/bioconductor-scshapes/meta.yaml
+++ b/recipes/bioconductor-scshapes/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "scShapes" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b5284952d27abe9951426b826927589d
+  md5: 5a4954c320f7b1f30f8fbff6e9f5ad91
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scshapes", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-dgof
     - r-emdbook
@@ -31,7 +32,7 @@ requirements:
     - r-pscl
     - r-vgam
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-dgof
     - r-emdbook
diff --git a/recipes/bioconductor-sctensor/meta.yaml b/recipes/bioconductor-sctensor/meta.yaml
index c4d7f96cb801e..a835706474c23 100644
--- a/recipes/bioconductor-sctensor/meta.yaml
+++ b/recipes/bioconductor-sctensor/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.10.0" %}
+{% set version = "2.12.0" %}
 {% set name = "scTensor" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a026dfae8b4238cae3ff79142fc22cdb
+  md5: cfbb59a88b526fe373aacf4b1b1a5a97
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sctensor", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, LRBaseDbi, Seurat, scTGIF, Homo.sapiens
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-category >=2.66.0,<2.67.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
-    - 'bioconductor-meshdbi >=1.36.0,<1.37.0'
-    - 'bioconductor-meshr >=2.6.0,<2.7.0'
-    - 'bioconductor-reactome.db >=1.84.0,<1.85.0'
-    - 'bioconductor-reactomepa >=1.44.0,<1.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-schex >=1.14.0,<1.15.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-category >=2.68.0,<2.69.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
+    - 'bioconductor-meshdbi >=1.38.0,<1.39.0'
+    - 'bioconductor-meshr >=2.8.0,<2.9.0'
+    - 'bioconductor-reactome.db >=1.86.0,<1.87.0'
+    - 'bioconductor-reactomepa >=1.46.0,<1.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-schex >=1.16.0,<1.17.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-abind
     - r-base
     - r-biocmanager
@@ -55,20 +56,20 @@ requirements:
     - r-tagcloud
     - r-visnetwork
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-category >=2.66.0,<2.67.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
-    - 'bioconductor-meshdbi >=1.36.0,<1.37.0'
-    - 'bioconductor-meshr >=2.6.0,<2.7.0'
-    - 'bioconductor-reactome.db >=1.84.0,<1.85.0'
-    - 'bioconductor-reactomepa >=1.44.0,<1.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-schex >=1.14.0,<1.15.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-category >=2.68.0,<2.69.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
+    - 'bioconductor-meshdbi >=1.38.0,<1.39.0'
+    - 'bioconductor-meshr >=2.8.0,<2.9.0'
+    - 'bioconductor-reactome.db >=1.86.0,<1.87.0'
+    - 'bioconductor-reactomepa >=1.46.0,<1.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-schex >=1.16.0,<1.17.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-abind
     - r-base
     - r-biocmanager
diff --git a/recipes/bioconductor-sctgif/meta.yaml b/recipes/bioconductor-sctgif/meta.yaml
index 42c82df750628..bc0285138b195 100644
--- a/recipes/bioconductor-sctgif/meta.yaml
+++ b/recipes/bioconductor-sctgif/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %} 
+{% set version = "1.16.0" %}
 {% set name = "scTGIF" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 374dde7d11795e274cfc50aed4fe792d
+  md5: 7fcf2fd9ff8c1d34aaa64399fa876f3a
 build:
-  number: 1
+  number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sctgif", max_pin="x.x") }}'
 # Suggests: testthat
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-schex >=1.14.0,<1.15.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-schex >=1.16.0,<1.17.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-igraph
@@ -43,13 +44,13 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocstyle >=2.28.0,<2.29.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-schex >=1.14.0,<1.15.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-schex >=1.16.0,<1.17.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-igraph
diff --git a/recipes/bioconductor-scthi.data/meta.yaml b/recipes/bioconductor-scthi.data/meta.yaml
index 05d45aa099e78..d2c6c62b7e0c1 100644
--- a/recipes/bioconductor-scthi.data/meta.yaml
+++ b/recipes/bioconductor-scthi.data/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "scTHI.data" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 28e55c6ba60cb8527c376ca87993c95c
+  md5: 1fd101f8dc30262c323bdfa79810f6f5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scthi.data", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-scthi.data/post-link.sh b/recipes/bioconductor-scthi.data/post-link.sh
index 16c433ce6a893..7763769e34368 100644
--- a/recipes/bioconductor-scthi.data/post-link.sh
+++ b/recipes/bioconductor-scthi.data/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "scthi.data-1.12.0"
+installBiocDataPackage.sh "scthi.data-1.14.0"
diff --git a/recipes/bioconductor-scthi/meta.yaml b/recipes/bioconductor-scthi/meta.yaml
index b4e4abeceb114..1e0797b2c9961 100644
--- a/recipes/bioconductor-scthi/meta.yaml
+++ b/recipes/bioconductor-scthi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "scTHI" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0ebb6421876980b77128b35e11b44e86
+  md5: c90e49b0aaed73dd76437e5236607e06
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scthi", max_pin="x.x") }}'
   noarch: generic
 # Suggests: scTHI.data, knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-rtsne
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-rtsne
 test:
diff --git a/recipes/bioconductor-sctreeviz/meta.yaml b/recipes/bioconductor-sctreeviz/meta.yaml
index 39baa864da5fb..b05fd3b6f86e7 100644
--- a/recipes/bioconductor-sctreeviz/meta.yaml
+++ b/recipes/bioconductor-sctreeviz/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "scTreeViz" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 927a1013984382aa44378cc9c728e2d4
+  md5: 9e1a317862ad079f52876f54d7160bde
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sctreeviz", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, testthat, SC3, scRNAseq, rmarkdown, msd16s, metagenomeSeq, epivizrStandalone, GenomeInfoDb
 requirements:
   host:
-    - 'bioconductor-epivizr >=2.30.0,<2.31.0'
-    - 'bioconductor-epivizrdata >=1.28.0,<1.29.0'
-    - 'bioconductor-epivizrserver >=1.28.0,<1.29.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-epivizr >=2.32.0,<2.33.0'
+    - 'bioconductor-epivizrdata >=1.30.0,<1.31.0'
+    - 'bioconductor-epivizrserver >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-clustree
     - r-data.table
@@ -42,14 +43,14 @@ requirements:
     - r-seurat
     - r-sys
   run:
-    - 'bioconductor-epivizr >=2.30.0,<2.31.0'
-    - 'bioconductor-epivizrdata >=1.28.0,<1.29.0'
-    - 'bioconductor-epivizrserver >=1.28.0,<1.29.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-epivizr >=2.32.0,<2.33.0'
+    - 'bioconductor-epivizrdata >=1.30.0,<1.31.0'
+    - 'bioconductor-epivizrserver >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-clustree
     - r-data.table
diff --git a/recipes/bioconductor-scuttle/meta.yaml b/recipes/bioconductor-scuttle/meta.yaml
index 9ce4f8ac5fa8f..a578d0cb4595c 100644
--- a/recipes/bioconductor-scuttle/meta.yaml
+++ b/recipes/bioconductor-scuttle/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.1" %}
+{% set version = "1.12.0" %}
 {% set name = "scuttle" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,40 +11,41 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 55127c8e30fa4c15da7ba31721165165
+  md5: b784ac30ef76b7c0cdac8b79be67b995
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scuttle", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, scRNAseq, rmarkdown, testthat, scran
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-beachmat >=2.16.0,<2.17.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - r-rcpp
     - libblas
     - liblapack
   run:
-    - 'bioconductor-beachmat >=2.16.0,<2.17.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - r-rcpp
@@ -57,8 +58,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-3
+  license: GPL-3.0-only
   summary: 'Single-Cell RNA-Seq Analysis Utilities'
   description: 'Provides basic utility functions for performing single-cell analyses, focusing on simple normalization, quality control and data transformations. Also provides some helper functions to assist development of other packages.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
diff --git a/recipes/bioconductor-scvir/meta.yaml b/recipes/bioconductor-scvir/meta.yaml
index 4608eb617c904..1c38e61212da1 100644
--- a/recipes/bioconductor-scvir/meta.yaml
+++ b/recipes/bioconductor-scvir/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "scviR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,38 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7a3c949daf08cae151d0ffc4fe6918fb
+  md5: 71d6c427fcc042ac8b011a31935641df
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-scvir", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, reshape2, ggplot2, rhdf5, BiocStyle
 requirements:
   host:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-pheatmap
     - r-reticulate
     - r-shiny
   run:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-pheatmap
     - r-reticulate
diff --git a/recipes/bioconductor-sdams/meta.yaml b/recipes/bioconductor-sdams/meta.yaml
index 10f1e293bd99c..8ad0a22e4f270 100644
--- a/recipes/bioconductor-sdams/meta.yaml
+++ b/recipes/bioconductor-sdams/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "SDAMS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 70ceba01b2d6ce773d03ed13e393ee87
+  md5: 27ac3a8046a94bf8473502ee2cd5afe1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sdams", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat
 requirements:
   host:
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-trust
   run:
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-trust
 test:
diff --git a/recipes/bioconductor-sechm/meta.yaml b/recipes/bioconductor-sechm/meta.yaml
index 14b5526db7524..5d3d35924430b 100644
--- a/recipes/bioconductor-sechm/meta.yaml
+++ b/recipes/bioconductor-sechm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "sechm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f1467f46edc1aa8f86c05aae81d2f368
+  md5: 6935a759779eaf70e1cbf3f22c7a1358
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sechm", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-matrixstats
     - r-randomcolor
     - r-seriation
   run:
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circlize
     - r-matrixstats
diff --git a/recipes/bioconductor-segmenter/meta.yaml b/recipes/bioconductor-segmenter/meta.yaml
index c03b8b20a8a21..76cfdd42e39c9 100644
--- a/recipes/bioconductor-segmenter/meta.yaml
+++ b/recipes/bioconductor-segmenter/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "segmenter" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 45997faeb651d2c6d5670b3713a8388d
+  md5: 8877dce2f35cc59e9c3d8b3fb38bf29e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-segmenter", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, TxDb.Hsapiens.UCSC.hg18.knownGene, Gviz
 requirements:
   host:
-    - 'bioconductor-bamsignals >=1.32.0,<1.33.0'
-    - 'bioconductor-chipseeker >=1.36.0,<1.37.0'
+    - 'bioconductor-bamsignals >=1.34.0,<1.35.0'
+    - 'bioconductor-chipseeker >=1.38.0,<1.39.0'
     - 'bioconductor-chromhmmdata >=0.99.0,<0.100.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-bamsignals >=1.32.0,<1.33.0'
-    - 'bioconductor-chipseeker >=1.36.0,<1.37.0'
+    - 'bioconductor-bamsignals >=1.34.0,<1.35.0'
+    - 'bioconductor-chipseeker >=1.38.0,<1.39.0'
     - 'bioconductor-chromhmmdata >=0.99.0,<0.100.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-segmentseq/build.sh b/recipes/bioconductor-segmentseq/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-segmentseq/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-segmentseq/meta.yaml b/recipes/bioconductor-segmentseq/meta.yaml
new file mode 100644
index 0000000000000..e43eace8f35f7
--- /dev/null
+++ b/recipes/bioconductor-segmentseq/meta.yaml
@@ -0,0 +1,53 @@
+{% set version = "2.36.0" %}
+{% set name = "segmentSeq" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: f86ecc00eba08e4f13412c624d98697c
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-segmentseq", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, BiocGenerics
+requirements:
+  host:
+    - 'bioconductor-bayseq >=2.36.0,<2.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - r-abind
+    - r-base
+  run:
+    - 'bioconductor-bayseq >=2.36.0,<2.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - r-abind
+    - r-base
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'Methods for identifying small RNA loci from high-throughput sequencing data'
+  description: 'High-throughput sequencing technologies allow the production of large volumes of short sequences, which can be aligned to the genome to create a set of matches to the genome. By looking for regions of the genome which to which there are high densities of matches, we can infer a segmentation of the genome into regions of biological significance. The methods in this package allow the simultaneous segmentation of data from multiple samples, taking into account replicate data, in order to create a consensus segmentation. This has obvious applications in a number of classes of sequencing experiments, particularly in the discovery of small RNA loci and novel mRNA transcriptome discovery.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-selectksigs/meta.yaml b/recipes/bioconductor-selectksigs/meta.yaml
index 3455fc77d0785..15de6e1d4eb79 100644
--- a/recipes/bioconductor-selectksigs/meta.yaml
+++ b/recipes/bioconductor-selectksigs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "selectKSigs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,16 +11,17 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 730b7e4439fcf388eb775a220e23213f
+  md5: 95d84e53b480a52695c40071dfa9be68
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-selectksigs", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, testthat, BiocStyle, ggplot2, dplyr, tidyr
 requirements:
   host:
-    - 'bioconductor-hilda >=1.14.0,<1.15.0'
+    - 'bioconductor-hilda >=1.16.0,<1.17.0'
     - r-base
     - r-gtools
     - r-magrittr
@@ -28,7 +29,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-hilda >=1.14.0,<1.15.0'
+    - 'bioconductor-hilda >=1.16.0,<1.17.0'
     - r-base
     - r-gtools
     - r-magrittr
diff --git a/recipes/bioconductor-selex/meta.yaml b/recipes/bioconductor-selex/meta.yaml
index 51229bf30d096..f722404705424 100644
--- a/recipes/bioconductor-selex/meta.yaml
+++ b/recipes/bioconductor-selex/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "SELEX" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 37f1efe42a0799212df721e13d53dfe9
+  md5: fdb39d601a2ce8c882e9a0e822ef014c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-selex", max_pin="x.x") }}'
   noarch: generic
 # SystemRequirements: Java (>= 1.5)
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - 'r-rjava >=0.5-0'
     - openjdk
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - 'r-rjava >=0.5-0'
     - openjdk
diff --git a/recipes/bioconductor-semdist/meta.yaml b/recipes/bioconductor-semdist/meta.yaml
index 221af1c2a8fe0..4d76de2af60bc 100644
--- a/recipes/bioconductor-semdist/meta.yaml
+++ b/recipes/bioconductor-semdist/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "SemDist" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2c69ea1b7da63b8c2dc2e99923dba8d3
+  md5: b95a04e7daaae24fb22f3b2a40b17f5f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-semdist", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GOSemSim
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-semisup/meta.yaml b/recipes/bioconductor-semisup/meta.yaml
index b857a81831940..e541f2fdda943 100644
--- a/recipes/bioconductor-semisup/meta.yaml
+++ b/recipes/bioconductor-semisup/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "semisup" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 2ff384fc0dbca3f33f519a4b8de74167
+  md5: fb3d32c07acbfadbbee01f9a6c8333fe
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-semisup", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, SummarizedExperiment
 requirements:
diff --git a/recipes/bioconductor-seq.hotspot/meta.yaml b/recipes/bioconductor-seq.hotspot/meta.yaml
index 2f14c697b4d91..a2ea709167002 100644
--- a/recipes/bioconductor-seq.hotspot/meta.yaml
+++ b/recipes/bioconductor-seq.hotspot/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "seq.hotSPOT" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 20614c1b700f6efb77257e9ec89a13fe
+  md5: 37e04dc7e1bb05af58c50cb7701388c7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-seq.hotspot", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
 requirements:
diff --git a/recipes/bioconductor-seq2pathway.data/meta.yaml b/recipes/bioconductor-seq2pathway.data/meta.yaml
index bb203b9c7cc5e..8410739a77c65 100644
--- a/recipes/bioconductor-seq2pathway.data/meta.yaml
+++ b/recipes/bioconductor-seq2pathway.data/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "seq2pathway.data" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f5b47c139925e607c100f2e3e0292db0
+  md5: b0035ff986391159c1329eac9fb96661
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-seq2pathway.data", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-seq2pathway.data/post-link.sh b/recipes/bioconductor-seq2pathway.data/post-link.sh
index 8d976f432fdf2..30b629ea74cff 100644
--- a/recipes/bioconductor-seq2pathway.data/post-link.sh
+++ b/recipes/bioconductor-seq2pathway.data/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "seq2pathway.data-1.32.0"
+installBiocDataPackage.sh "seq2pathway.data-1.34.0"
diff --git a/recipes/bioconductor-seq2pathway/meta.yaml b/recipes/bioconductor-seq2pathway/meta.yaml
index cd6d03f8af502..4dbc70fe6e390 100644
--- a/recipes/bioconductor-seq2pathway/meta.yaml
+++ b/recipes/bioconductor-seq2pathway/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "seq2pathway" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 76098141614149c9fcc18823aeb3e359
+  md5: 4aaa34232c40fdc31f493d67c72742c4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-seq2pathway", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-seq2pathway.data >=1.32.0,<1.33.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-seq2pathway.data >=1.34.0,<1.35.0'
     - r-base
     - r-gsa
     - r-nnet
     - r-wgcna
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-seq2pathway.data >=1.32.0,<1.33.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-seq2pathway.data >=1.34.0,<1.35.0'
     - r-base
     - r-gsa
     - r-nnet
diff --git a/recipes/bioconductor-seqarchr/meta.yaml b/recipes/bioconductor-seqarchr/meta.yaml
index b2d195646ee7e..228d43f42052d 100644
--- a/recipes/bioconductor-seqarchr/meta.yaml
+++ b/recipes/bioconductor-seqarchr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "seqArchR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fecd57059a333de35b3509909921541c
+  md5: b991ca99e52e357f8ef95a3a75a1decc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-seqarchr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: cowplot, hopach (>= 2.42.0), BiocStyle, knitr (>= 1.22), rmarkdown (>= 1.12), testthat (>= 3.0.2), covr, vdiffr (>= 0.3.0)
 # SystemRequirements: Python (>= 3.5), scikit-learn (>= 0.21.2), packaging
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - r-cli
     - r-cluster
@@ -38,8 +39,8 @@ requirements:
     - 'r-reshape2 >=1.4.3'
     - 'r-reticulate >=1.22'
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - r-cli
     - r-cluster
diff --git a/recipes/bioconductor-seqarchrplus/meta.yaml b/recipes/bioconductor-seqarchrplus/meta.yaml
index 73dd5f3d2a1b9..9c12d8beb187b 100644
--- a/recipes/bioconductor-seqarchrplus/meta.yaml
+++ b/recipes/bioconductor-seqarchrplus/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "seqArchRplus" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,57 +11,60 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 35db67395c9e71a8e40360d5266a8e1f
+  md5: 9f20e2eed3e5b5a498564ea201b251d9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-seqarchrplus", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BSgenome.Dmelanogaster.UCSC.dm6, BiocStyle, CAGEr (>= 2.0.2), covr, knitr (>= 1.22), org.Dm.eg.db, rmarkdown (>= 1.12), TxDb.Dmelanogaster.UCSC.dm6.ensGene, xfun
+# Suggests: BSgenome.Dmelanogaster.UCSC.dm6, BiocStyle, CAGEr (>= 2.0.2), covr, knitr (>= 1.22), org.Dm.eg.db, pdftools, rmarkdown (>= 1.12), slickR, TxDb.Dmelanogaster.UCSC.dm6.ensGene, xfun
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-chipseeker >=1.36.0,<1.37.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-heatmaps >=1.24.0,<1.25.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-seqarchr >=1.4.0,<1.5.0'
-    - 'bioconductor-seqpattern >=1.32.0,<1.33.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-chipseeker >=1.38.0,<1.39.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-heatmaps >=1.26.0,<1.27.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-seqarchr >=1.6.0,<1.7.0'
+    - 'bioconductor-seqpattern >=1.34.0,<1.35.0'
     - r-base
     - r-cli
     - r-cowplot
     - r-factoextra
-    - r-forcats
+    - r-ggimage
     - r-ggplot2
     - r-gridextra
+    - r-magick
     - r-rcolorbrewer
     - r-scales
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-chipseeker >=1.36.0,<1.37.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-heatmaps >=1.24.0,<1.25.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-seqarchr >=1.4.0,<1.5.0'
-    - 'bioconductor-seqpattern >=1.32.0,<1.33.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-chipseeker >=1.38.0,<1.39.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-heatmaps >=1.26.0,<1.27.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-seqarchr >=1.6.0,<1.7.0'
+    - 'bioconductor-seqpattern >=1.34.0,<1.35.0'
     - r-base
     - r-cli
     - r-cowplot
     - r-factoextra
-    - r-forcats
+    - r-ggimage
     - r-ggplot2
     - r-gridextra
+    - r-magick
     - r-rcolorbrewer
     - r-scales
 test:
@@ -71,6 +74,6 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: GPL-3
   summary: 'Downstream analyses of promoter sequence architectures and HTML report generation'
-  description: 'seqArchRplus facilitates downstream analyses of promoter sequence architectures/clusters identified by seqArchR (or any other tool/method). With additional available information such as the TPM values and interquantile widths (IQWs) of the CAGE tag clusters, seqArchRplus can order the input promoter clusters by their shape (IQWs), and write the cluster information as browser/IGV track files. Provided visualizations are of two kind: per sample/stage and per cluster visualizations. Those of the first kind include: plot panels for each sample showing per cluster shape, TPM and other score distributions, sequence logos, and peak annotations. The second include per cluster chromosome-wise and strand distributions, motif occurrence heatmaps and GO term enrichments. Additionally, seqArchRplus can also generate HTML reports for easy viewing and comparison of promoter architectures between samples/stages (future).'
+  description: 'seqArchRplus facilitates downstream analyses of promoter sequence architectures/clusters identified by seqArchR (or any other tool/method). With additional available information such as the TPM values and interquantile widths (IQWs) of the CAGE tag clusters, seqArchRplus can order the input promoter clusters by their shape (IQWs), and write the cluster information as browser/IGV track files. Provided visualizations are of two kind: per sample/stage and per cluster visualizations. Those of the first kind include: plot panels for each sample showing per cluster shape, TPM and other score distributions, sequence logos, and peak annotations. The second include per cluster chromosome-wise and strand distributions, motif occurrence heatmaps and GO term enrichments. Additionally, seqArchRplus can also generate HTML reports for easy viewing and comparison of promoter architectures between samples/stages.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
diff --git a/recipes/bioconductor-seqarray/meta.yaml b/recipes/bioconductor-seqarray/meta.yaml
index cfd8a66707fd9..c533d2b4768d9 100644
--- a/recipes/bioconductor-seqarray/meta.yaml
+++ b/recipes/bioconductor-seqarray/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.1" %}
+{% set version = "1.42.4" %}
 {% set name = "SeqArray" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7fe9f3e22cc01b8c418d18e382b7a1c7
+  md5: 607951cd78bea8ef1156be7aba41052f
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-seqarray", max_pin="x.x") }}'
 # Suggests: Biobase, BiocGenerics, BiocParallel, RUnit, Rcpp, SNPRelate, digest, crayon, knitr, markdown, rmarkdown, Rsamtools, VariantAnnotation
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   build:
     - {{ compiler('c') }}
@@ -46,8 +47,14 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-3
+  license: GPL-3.0-only
   summary: 'Data Management of Large-Scale Whole-Genome Sequence Variant Calls'
   description: 'Data management of large-scale whole-genome sequencing variant calls with thousands of individuals: genotypic data (e.g., SNVs, indels and structural variation calls) and annotations in SeqArray GDS files are stored in an array-oriented and compressed manner, with efficient data access using the R programming language.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
+
diff --git a/recipes/bioconductor-seqbias/meta.yaml b/recipes/bioconductor-seqbias/meta.yaml
index 7ccf27fe16e38..68fec85f215e5 100644
--- a/recipes/bioconductor-seqbias/meta.yaml
+++ b/recipes/bioconductor-seqbias/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "seqbias" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 0c5d17dfe8932ed8cd03a6b0428a74fd
+  md5: 0482c079ead497bdddd61be6bac445f7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-seqbias", max_pin="x.x") }}'
 # Suggests: Rsamtools, ggplot2
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-seqc/meta.yaml b/recipes/bioconductor-seqc/meta.yaml
index a24dc500afc1a..6da322827d369 100644
--- a/recipes/bioconductor-seqc/meta.yaml
+++ b/recipes/bioconductor-seqc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "seqc" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 834e2a378860f1f6aea76581e87c876f
+  md5: 105a278c97aca90968641aec403c1219
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-seqc", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-seqc/post-link.sh b/recipes/bioconductor-seqc/post-link.sh
index c4675267b71f1..9d67b6fc469d9 100644
--- a/recipes/bioconductor-seqc/post-link.sh
+++ b/recipes/bioconductor-seqc/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "seqc-1.34.0"
+installBiocDataPackage.sh "seqc-1.36.0"
diff --git a/recipes/bioconductor-seqcat/meta.yaml b/recipes/bioconductor-seqcat/meta.yaml
index a3fe883852757..4c3f9796fbf43 100644
--- a/recipes/bioconductor-seqcat/meta.yaml
+++ b/recipes/bioconductor-seqcat/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "seqCAT" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 28f42128bb177d143b80d274175364f0
+  md5: a7694d3599501816a63d4b6e831af35d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-seqcat", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, rmarkdown, testthat, BiocManager
 requirements:
   host:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - 'r-dplyr >=0.5.0'
     - 'r-ggplot2 >=2.2.1'
@@ -35,13 +36,13 @@ requirements:
     - 'r-scales >=0.4.1'
     - 'r-tidyr >=0.6.1'
   run:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - 'r-dplyr >=0.5.0'
     - 'r-ggplot2 >=2.2.1'
diff --git a/recipes/bioconductor-seqcna.annot/meta.yaml b/recipes/bioconductor-seqcna.annot/meta.yaml
index b6742c5e3f45a..586086b68b240 100644
--- a/recipes/bioconductor-seqcna.annot/meta.yaml
+++ b/recipes/bioconductor-seqcna.annot/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "seqCNA.annot" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: feee6a27f305149bdfec8a823e2134ec
+  md5: a61df6e0824d7c3c3f4c697b5bd73e30
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-seqcna.annot", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-seqcna.annot/post-link.sh b/recipes/bioconductor-seqcna.annot/post-link.sh
index d92e89050b20f..55de60d88d9ad 100644
--- a/recipes/bioconductor-seqcna.annot/post-link.sh
+++ b/recipes/bioconductor-seqcna.annot/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "seqcna.annot-1.36.0"
+installBiocDataPackage.sh "seqcna.annot-1.38.0"
diff --git a/recipes/bioconductor-seqcna/meta.yaml b/recipes/bioconductor-seqcna/meta.yaml
index 564887adce0e2..fbd5dc10071c8 100644
--- a/recipes/bioconductor-seqcna/meta.yaml
+++ b/recipes/bioconductor-seqcna/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "seqCNA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: dfe25506e95aa7a625d69e2e5420f168
+  md5: 06ae9363110630b77cd3e5b4ae70b188
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-seqcna", max_pin="x.x") }}'
 # SystemRequirements: samtools
 requirements:
   host:
-    - 'bioconductor-glad >=2.64.0,<2.65.0'
-    - 'bioconductor-seqcna.annot >=1.36.0,<1.37.0'
+    - 'bioconductor-glad >=2.66.0,<2.67.0'
+    - 'bioconductor-seqcna.annot >=1.38.0,<1.39.0'
     - 'r-adehabitatlt >=0.3.4'
     - r-base
     - 'r-dosnow >=1.0.5'
@@ -29,8 +30,8 @@ requirements:
     - liblapack
     - samtools
   run:
-    - 'bioconductor-glad >=2.64.0,<2.65.0'
-    - 'bioconductor-seqcna.annot >=1.36.0,<1.37.0'
+    - 'bioconductor-glad >=2.66.0,<2.67.0'
+    - 'bioconductor-seqcna.annot >=1.38.0,<1.39.0'
     - 'r-adehabitatlt >=0.3.4'
     - r-base
     - 'r-dosnow >=1.0.5'
diff --git a/recipes/bioconductor-seqcombo/meta.yaml b/recipes/bioconductor-seqcombo/meta.yaml
index 9f21f96fe79ad..4afa58a79f493 100644
--- a/recipes/bioconductor-seqcombo/meta.yaml
+++ b/recipes/bioconductor-seqcombo/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "seqcombo" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 0ce813d4dc3284696f90d33e05f11f56
+  md5: 76a401edd5e5583a94ab3a1b599b7a78
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-seqcombo", max_pin="x.x") }}'
   noarch: generic
 # Suggests: emojifont, knitr, rmarkdown, prettydoc, tibble
 requirements:
diff --git a/recipes/bioconductor-seqgate/meta.yaml b/recipes/bioconductor-seqgate/meta.yaml
index 0d2e5925bdbe2..5ca65b1d94bf3 100644
--- a/recipes/bioconductor-seqgate/meta.yaml
+++ b/recipes/bioconductor-seqgate/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "SeqGate" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: caca9e158a9bfe2b69e3423a86a81654
+  md5: 786d9cf0f14de2b0056b9207daedbf45
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-seqgate", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 3.0.0), edgeR, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-biocmanager
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-biocmanager
 test:
diff --git a/recipes/bioconductor-seqgsea/meta.yaml b/recipes/bioconductor-seqgsea/meta.yaml
index bd2c3d5d81d64..0d91107a888ec 100644
--- a/recipes/bioconductor-seqgsea/meta.yaml
+++ b/recipes/bioconductor-seqgsea/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "SeqGSEA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c106db6ce0aeec4190b5f7fd7495a99a
+  md5: 13213924066a18535220d42938e923fa
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-seqgsea", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicRanges
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
     - r-base
     - r-doparallel
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
     - r-base
     - r-doparallel
 test:
diff --git a/recipes/bioconductor-seqlogo/meta.yaml b/recipes/bioconductor-seqlogo/meta.yaml
index 6ecaf507c15ab..7f32797f34d61 100644
--- a/recipes/bioconductor-seqlogo/meta.yaml
+++ b/recipes/bioconductor-seqlogo/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.66.0" %}
+{% set version = "1.68.0" %}
 {% set name = "seqLogo" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ea278495fc179bf6ef9309b2479b0671
+  md5: 0771c35a7929a3e71aa5eebaf4a624ef
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-seqlogo", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, rmarkdown, testthat
 requirements:
diff --git a/recipes/bioconductor-seqpattern/meta.yaml b/recipes/bioconductor-seqpattern/meta.yaml
index e00aa28fe26ec..78b4fabd8eb99 100644
--- a/recipes/bioconductor-seqpattern/meta.yaml
+++ b/recipes/bioconductor-seqpattern/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "seqPattern" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3ae45cac8349ba8a6cf5114662c3dd7f
+  md5: 90ef37347887673ee80f12fa953e02f3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-seqpattern", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Drerio.UCSC.danRer7, CAGEr, RUnit, BiocGenerics, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-kernsmooth
     - r-plotrix
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-kernsmooth
     - r-plotrix
diff --git a/recipes/bioconductor-seqsetvis/meta.yaml b/recipes/bioconductor-seqsetvis/meta.yaml
index 3ae2dd43d0f62..fce6340743e95 100644
--- a/recipes/bioconductor-seqsetvis/meta.yaml
+++ b/recipes/bioconductor-seqsetvis/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "seqsetvis" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 0593e5b221ee0dcaa6edeabb195bb9ff
+  md5: 0119c8a5e2475e3a0d35059b3c35dfd6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-seqsetvis", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocFileCache, BiocManager, BiocStyle, ChIPpeakAnno, covr, knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cowplot
     - r-data.table
@@ -39,16 +40,17 @@ requirements:
     - r-pbmcapply
     - r-png
     - r-rcolorbrewer
+    - r-scales
     - r-upsetr
   run:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cowplot
     - r-data.table
@@ -59,6 +61,7 @@ requirements:
     - r-pbmcapply
     - r-png
     - r-rcolorbrewer
+    - r-scales
     - r-upsetr
 test:
   commands:
diff --git a/recipes/bioconductor-seqsqc/meta.yaml b/recipes/bioconductor-seqsqc/meta.yaml
index a47cc4ce41ef6..dfcf859b73495 100644
--- a/recipes/bioconductor-seqsqc/meta.yaml
+++ b/recipes/bioconductor-seqsqc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "SeqSQC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 195f7e2bff5ce9fbd8e350f1022a530e
+  md5: 10e877d23b5c1572319af0515baca2c1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-seqsqc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, testthat
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-snprelate >=1.34.0,<1.35.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-snprelate >=1.36.0,<1.37.0'
     - r-base
     - r-e1071
     - r-ggally
@@ -36,12 +37,12 @@ requirements:
     - r-reshape2
     - r-rmarkdown
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-snprelate >=1.34.0,<1.35.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-snprelate >=1.36.0,<1.37.0'
     - r-base
     - r-e1071
     - r-ggally
diff --git a/recipes/bioconductor-seqtools/meta.yaml b/recipes/bioconductor-seqtools/meta.yaml
index 583d647382fcf..93a07f90dca3c 100644
--- a/recipes/bioconductor-seqtools/meta.yaml
+++ b/recipes/bioconductor-seqtools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "seqTools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0fc462bf24881e9f121c7e8e734055ef
+  md5: be9be6eb0ee1ff4ab001720970d68da8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-seqtools", max_pin="x.x") }}'
 # Suggests: RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-seqvartools/meta.yaml b/recipes/bioconductor-seqvartools/meta.yaml
index b50ab43f0dadf..cd40a732cfeb5 100644
--- a/recipes/bioconductor-seqvartools/meta.yaml
+++ b/recipes/bioconductor-seqvartools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "SeqVarTools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f0de0a3c46d81cc184e94e9f9258a01d
+  md5: 160f56cd78339c2e4d4b5c0766a47846
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-seqvartools", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, RUnit, stringr
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-seqarray >=1.40.0,<1.41.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-seqarray >=1.42.0,<1.43.0'
     - r-base
     - r-data.table
     - r-gwasexacthw
     - r-logistf
     - r-matrix
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-seqarray >=1.40.0,<1.41.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-seqarray >=1.42.0,<1.43.0'
     - r-base
     - r-data.table
     - r-gwasexacthw
diff --git a/recipes/bioconductor-serumstimulation/meta.yaml b/recipes/bioconductor-serumstimulation/meta.yaml
index 08afdb968f69b..7304fb6ceb832 100644
--- a/recipes/bioconductor-serumstimulation/meta.yaml
+++ b/recipes/bioconductor-serumstimulation/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "serumStimulation" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 642cc4d3939f4a05e331ef5d1f965835
+  md5: 4d3f1a4e58f500d7e424eef0b22c05ad
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-serumstimulation", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-serumstimulation/post-link.sh b/recipes/bioconductor-serumstimulation/post-link.sh
index 36e810aea6f28..f74707b1a8b74 100644
--- a/recipes/bioconductor-serumstimulation/post-link.sh
+++ b/recipes/bioconductor-serumstimulation/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "serumstimulation-1.36.0"
+installBiocDataPackage.sh "serumstimulation-1.38.0"
diff --git a/recipes/bioconductor-sesame/meta.yaml b/recipes/bioconductor-sesame/meta.yaml
index 5234aea678109..bef67f6a17dd4 100644
--- a/recipes/bioconductor-sesame/meta.yaml
+++ b/recipes/bioconductor-sesame/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.4" %}
+{% set version = "1.20.0" %}
 {% set name = "sesame" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d1f0f5e0d15b5b3e01160d6028497a58
+  md5: 9bb9cc07a6c773f324fdee69d75a8427
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sesame", max_pin="x.x") }}'
   noarch: generic
-# Suggests: scales, knitr, DNAcopy, e1071, randomForest, RPMM, rmarkdown, testthat, tidyr, BiocStyle, ggrepel, grDevices, KernSmooth, pals
+# Suggests: scales, BiocManager, knitr, DNAcopy, e1071, randomForest, RPMM, rmarkdown, testthat, tidyr, BiocStyle, ggrepel, grDevices, KernSmooth, pals
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-illuminaio >=0.42.0,<0.43.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-sesamedata >=1.18.0,<1.19.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-illuminaio >=0.44.0,<0.45.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-sesamedata >=1.20.0,<1.21.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -41,16 +42,16 @@ requirements:
     - r-tibble
     - 'r-wheatmap >=0.2.0'
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-illuminaio >=0.42.0,<0.43.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-sesamedata >=1.18.0,<1.19.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-illuminaio >=0.44.0,<0.45.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-sesamedata >=1.20.0,<1.21.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-sesamedata/meta.yaml b/recipes/bioconductor-sesamedata/meta.yaml
index 60840cc790ad0..48d75153c0584 100644
--- a/recipes/bioconductor-sesamedata/meta.yaml
+++ b/recipes/bioconductor-sesamedata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "sesameData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,37 +11,38 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4af907a4ed795d2493573b88d55fd4de
+  md5: 4cd44c4f5307d2775d94f2051b9a7f46
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sesamedata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, sesame, testthat, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-readr
     - r-stringr
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-readr
     - r-stringr
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-sesamedata/post-link.sh b/recipes/bioconductor-sesamedata/post-link.sh
index 6efd3a74642d9..f5cc75f5ec748 100644
--- a/recipes/bioconductor-sesamedata/post-link.sh
+++ b/recipes/bioconductor-sesamedata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "sesamedata-1.18.0"
+installBiocDataPackage.sh "sesamedata-1.20.0"
diff --git a/recipes/bioconductor-setools/meta.yaml b/recipes/bioconductor-setools/meta.yaml
index c7e0e948dd6b9..364be9dc5ca55 100644
--- a/recipes/bioconductor-setools/meta.yaml
+++ b/recipes/bioconductor-setools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "SEtools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9e6a9df3ebf6eaacc2cce51d39040f13
+  md5: 4b6f28a6fdf032d51f29793f25729114
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-setools", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, ggplot2
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-sechm >=1.8.0,<1.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-sechm >=1.10.0,<1.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-circlize
     - r-data.table
@@ -35,13 +36,13 @@ requirements:
     - r-openxlsx
     - r-pheatmap
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-sechm >=1.8.0,<1.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-sechm >=1.10.0,<1.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-circlize
     - r-data.table
diff --git a/recipes/bioconductor-sevenbridges/meta.yaml b/recipes/bioconductor-sevenbridges/meta.yaml
index cd03d3e9b99cd..66cb3290bcdbe 100644
--- a/recipes/bioconductor-sevenbridges/meta.yaml
+++ b/recipes/bioconductor-sevenbridges/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "sevenbridges" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f09e6b0788100a89ac38eb13887d8993
+  md5: 1c204add9c56d7518a5362b99111ec18
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sevenbridges", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, readr
 requirements:
   host:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-curl
     - r-data.table
@@ -33,7 +34,7 @@ requirements:
     - r-uuid
     - r-yaml
   run:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-curl
     - r-data.table
diff --git a/recipes/bioconductor-sevenc/meta.yaml b/recipes/bioconductor-sevenc/meta.yaml
index 38be4b0ddbb31..e56d3a0da93e1 100644
--- a/recipes/bioconductor-sevenc/meta.yaml
+++ b/recipes/bioconductor-sevenc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "sevenC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e943999c0ef7fc1049dd87b19bd4520e
+  md5: 575914dcdfdff58d10d7e926182801b9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sevenc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle, knitr, rmarkdown, GenomicInteractions, covr
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-boot >=1.3-20'
     - 'r-data.table >=1.10.4'
     - 'r-purrr >=0.2.2'
     - 'r-readr >=1.1.0'
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-boot >=1.3-20'
     - 'r-data.table >=1.10.4'
diff --git a/recipes/bioconductor-seventygenedata/meta.yaml b/recipes/bioconductor-seventygenedata/meta.yaml
index f77017c68ad61..076afa9211ab5 100644
--- a/recipes/bioconductor-seventygenedata/meta.yaml
+++ b/recipes/bioconductor-seventygenedata/meta.yaml
@@ -25,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - bioconductor-data-packages >=20230706
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-sfedata/meta.yaml b/recipes/bioconductor-sfedata/meta.yaml
index e7fd005710ab3..7b97631753e5d 100644
--- a/recipes/bioconductor-sfedata/meta.yaml
+++ b/recipes/bioconductor-sfedata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "SFEData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 405e15fbe6e99736481e40164abf3b04
+  md5: 7f3376870c972cba309b26d52d24fcbb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sfedata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, SpatialFeatureExperiment, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-sfedata/post-link.sh b/recipes/bioconductor-sfedata/post-link.sh
index 05d7347ba3e7f..f690a3a41ff4f 100644
--- a/recipes/bioconductor-sfedata/post-link.sh
+++ b/recipes/bioconductor-sfedata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "sfedata-1.2.0"
+installBiocDataPackage.sh "sfedata-1.4.0"
diff --git a/recipes/bioconductor-sgcp/meta.yaml b/recipes/bioconductor-sgcp/meta.yaml
index 9af3e937efa45..eaaca7d8f94e0 100644
--- a/recipes/bioconductor-sgcp/meta.yaml
+++ b/recipes/bioconductor-sgcp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "SGCP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 34dc1d2d2ed37410c921ae70f7b10965
+  md5: 46986c7dd18ef80a29c389500ed5023b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sgcp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocManager
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-caret
     - r-desctools
@@ -43,14 +44,14 @@ requirements:
     - r-rspectra
     - r-xtable
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-gostats >=2.66.0,<2.67.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-gostats >=2.68.0,<2.69.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-caret
     - r-desctools
diff --git a/recipes/bioconductor-sgseq/meta.yaml b/recipes/bioconductor-sgseq/meta.yaml
index b4fc72a14d8b6..a88e1160be342 100644
--- a/recipes/bioconductor-sgseq/meta.yaml
+++ b/recipes/bioconductor-sgseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "SGSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,44 +11,45 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3ffeb95713ad100a5988daf418801096
+  md5: 874492401a4a17bf0836f9fa011f459a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sgseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-igraph
     - r-runit
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-igraph
     - r-runit
diff --git a/recipes/bioconductor-sharedobject/build.sh b/recipes/bioconductor-sharedobject/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-sharedobject/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-sharedobject/meta.yaml b/recipes/bioconductor-sharedobject/meta.yaml
new file mode 100644
index 0000000000000..849fb0abf9871
--- /dev/null
+++ b/recipes/bioconductor-sharedobject/meta.yaml
@@ -0,0 +1,50 @@
+{% set version = "1.16.0" %}
+{% set name = "SharedObject" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 7c47265b6a5f61385088d6146c7e4879
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sharedobject", max_pin="x.x") }}'
+# Suggests: testthat, parallel, knitr, rmarkdown, BiocStyle
+# SystemRequirements: GNU make, C++11
+requirements:
+  host:
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - r-base
+    - r-bh
+    - r-rcpp
+    - libblas
+    - liblapack
+  run:
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - r-base
+    - r-bh
+    - r-rcpp
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - automake
+    - make
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'Sharing R objects across multiple R processes without memory duplication'
+  description: 'This package is developed for facilitating parallel computing in R. It is capable to create an R object in the shared memory space and share the data across multiple R processes. It avoids the overhead of memory dulplication and data transfer, which make sharing big data object across many clusters possible.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-shdz.db/meta.yaml b/recipes/bioconductor-shdz.db/meta.yaml
index db050bfdcd0ac..b7927519c0bdf 100644
--- a/recipes/bioconductor-shdz.db/meta.yaml
+++ b/recipes/bioconductor-shdz.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "SHDZ.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 63c4439a272a5cd0c4746e9e53a7bdc7
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-shdz.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-shinyepico/meta.yaml b/recipes/bioconductor-shinyepico/meta.yaml
index d2a600fdca1a7..352d8232c1e6f 100644
--- a/recipes/bioconductor-shinyepico/meta.yaml
+++ b/recipes/bioconductor-shinyepico/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "shinyepico" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 4eb22bc9e04f69e4d52faf1dafc43809
+  md5: 044010b7c6b7570adb28be7374473f82
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-shinyepico", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr (>= 1.30.0), mCSEA (>= 1.10.0), IlluminaHumanMethylation450kanno.ilmn12.hg19, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylationEPICanno.ilm10b4.hg19, IlluminaHumanMethylationEPICmanifest, testthat, minfiData, BiocStyle
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - 'r-data.table >=1.13.0'
     - 'r-doparallel >=1.0.0'
@@ -47,10 +48,10 @@ requirements:
     - 'r-tidyr >=1.2.0'
     - 'r-zip >=2.1.0'
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - 'r-data.table >=1.13.0'
     - 'r-doparallel >=1.0.0'
diff --git a/recipes/bioconductor-shinymethyl/meta.yaml b/recipes/bioconductor-shinymethyl/meta.yaml
index 505a32b6f3332..09cdddcbcd8cc 100644
--- a/recipes/bioconductor-shinymethyl/meta.yaml
+++ b/recipes/bioconductor-shinymethyl/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "shinyMethyl" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5f8531aa5c428db361db5abf32e59111
+  md5: 21f2fe819a72a5c4db3694a22dcda934
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-shinymethyl", max_pin="x.x") }}'
   noarch: generic
 # Suggests: shinyMethylData, minfiData, BiocStyle, knitr, testthat
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
     - r-htmltools
     - r-rcolorbrewer
     - r-shiny
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
     - r-base
     - r-htmltools
     - r-rcolorbrewer
diff --git a/recipes/bioconductor-shinymethyldata/meta.yaml b/recipes/bioconductor-shinymethyldata/meta.yaml
index 11cedfd25f71c..e41c94e7ad9f3 100644
--- a/recipes/bioconductor-shinymethyldata/meta.yaml
+++ b/recipes/bioconductor-shinymethyldata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "shinyMethylData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f633d8b104a4f61c393b15f59671039b
+  md5: 46f32db849aaa1467d09b0a371769374
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-shinymethyldata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-shinymethyldata/post-link.sh b/recipes/bioconductor-shinymethyldata/post-link.sh
index 51a237e07d36e..3d514dc1f7ffc 100644
--- a/recipes/bioconductor-shinymethyldata/post-link.sh
+++ b/recipes/bioconductor-shinymethyldata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "shinymethyldata-1.20.0"
+installBiocDataPackage.sh "shinymethyldata-1.22.0"
diff --git a/recipes/bioconductor-shortread/meta.yaml b/recipes/bioconductor-shortread/meta.yaml
index 3aada6e844fcc..139aace635d19 100644
--- a/recipes/bioconductor-shortread/meta.yaml
+++ b/recipes/bioconductor-shortread/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.58.0" %}
+{% set version = "1.60.0" %}
 {% set name = "ShortRead" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a8547be10c12f7765d3e25a4a735af39
+  md5: 480786b1db8f8138a7a4e8c36f9bdfc4
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-shortread", max_pin="x.x") }}'
 # Suggests: BiocStyle, RUnit, biomaRt, GenomicFeatures, yeastNagalakshmi
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-hwriter
     - r-lattice
@@ -40,19 +41,19 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-hwriter
     - r-lattice
@@ -71,6 +72,8 @@ about:
   summary: 'FASTQ input and manipulation'
   description: 'This package implements sampling, iteration, and input of FASTQ files. The package includes functions for filtering and trimming reads, and for generating a quality assessment report. Data are represented as DNAStringSet-derived objects, and easily manipulated for a diversity of purposes.  The package also contains legacy support for early single-end, ungapped alignment formats.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:shortread
   parent_recipe:
diff --git a/recipes/bioconductor-siamcat/meta.yaml b/recipes/bioconductor-siamcat/meta.yaml
index 956cab8ec228e..d94c3be14962d 100644
--- a/recipes/bioconductor-siamcat/meta.yaml
+++ b/recipes/bioconductor-siamcat/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.4.0" %}
+{% set version = "2.6.0" %}
 {% set name = "SIAMCAT" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 38b6d1bc1d77495fe3faf0efc44cabb5
+  md5: 36938473e8b2bd9b269fae69ec312e8d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-siamcat", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BiocStyle, optparse, testthat, knitr, rmarkdown, tidyverse, ggpubr
+# Suggests: BiocStyle, testthat, knitr, rmarkdown, tidyverse, ggpubr
 requirements:
   host:
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
     - r-base
     - r-beanplot
     - r-corrplot
@@ -44,7 +45,7 @@ requirements:
     - r-scales
     - r-stringr
   run:
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
     - r-base
     - r-beanplot
     - r-corrplot
diff --git a/recipes/bioconductor-sictools/build.sh b/recipes/bioconductor-sictools/build.sh
index 8ed8c159a97a0..c1d13421f5f1e 100644
--- a/recipes/bioconductor-sictools/build.sh
+++ b/recipes/bioconductor-sictools/build.sh
@@ -2,10 +2,10 @@
 mv DESCRIPTION DESCRIPTION.old
 grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
 mkdir -p ~/.R
-echo -e "CC=$CC -I$PREFIX/include -L$PREFIX/lib
+echo -e "CC=$CC
 FC=$FC
-CXX=$CXX -I$PREFIX/include -L$PREFIX/lib
+CXX=$CXX
 CXX98=$CXX
 CXX11=$CXX
 CXX14=$CXX" > ~/.R/Makevars
-MAKE="make LIBCURSES=-lncurses" $R CMD INSTALL --build .
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-sictools/build_failure.linux-64.yaml b/recipes/bioconductor-sictools/build_failure.linux-64.yaml
new file mode 100644
index 0000000000000..c447c0a1d2387
--- /dev/null
+++ b/recipes/bioconductor-sictools/build_failure.linux-64.yaml
@@ -0,0 +1,37 @@
+recipe_sha: d0341aa6f0be4917a820c67382d360ac5f5e76815434d7cecb1769b617051f44  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+reason: |-
+  bgzf.h:33:10: fatal error: zlib.h: No such file or directory
+category: |-
+  compiler error
+log: |-
+  13:35:37 BIOCONDA INFO (OUT) In file included from bgzf.c:32:
+  13:35:37 BIOCONDA INFO (OUT) bgzf.h:33:10: fatal error: zlib.h: No such file or directory
+  13:35:37 BIOCONDA INFO (OUT)    33 | #include <zlib.h>
+  13:35:37 BIOCONDA INFO (OUT)       |          ^~~~~~~~
+  13:35:37 BIOCONDA INFO (OUT) compilation terminated.
+  13:35:37 BIOCONDA INFO (OUT) make[2]: *** [Makefile:56: bgzf.o] Error 1
+  13:35:37 BIOCONDA INFO (OUT) make[2]: Leaving directory '$SRC_DIR/src'
+  13:35:37 BIOCONDA INFO (OUT) make[1]: *** [Makefile:27: lib-recur] Error 1
+  13:35:37 BIOCONDA INFO (OUT) make[1]: Leaving directory '$SRC_DIR/src'
+  13:35:37 BIOCONDA INFO (OUT) make: *** [Makefile:27: all-recur] Error 1
+  13:35:37 BIOCONDA INFO (OUT) ERROR: compilation failed for package ‘SICtools’
+  13:35:37 BIOCONDA INFO (OUT) * removing ‘/opt/conda/conda-bld/bioconductor-sictools_1702301527486/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/R/library/SICtools’
+  13:35:38 BIOCONDA INFO (OUT) Traceback (most recent call last):
+  13:35:38 BIOCONDA INFO (OUT)   File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
+  13:35:38 BIOCONDA INFO (OUT)     sys.exit(main())
+  13:35:38 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
+  13:35:38 BIOCONDA INFO (OUT)     call_conda_build(action, config)
+  13:35:38 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
+  13:35:38 BIOCONDA INFO (OUT)     result = api.build(
+  13:35:38 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
+  13:35:38 BIOCONDA INFO (OUT)     return build_tree(
+  13:35:38 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
+  13:35:38 BIOCONDA INFO (OUT)     packages_from_this = build(metadata, stats,
+  13:35:38 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
+  13:35:38 BIOCONDA INFO (OUT)     utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
+  13:35:38 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
+  13:35:38 BIOCONDA INFO (OUT)     return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
+  13:35:38 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
+  13:35:38 BIOCONDA INFO (OUT)     raise subprocess.CalledProcessError(proc.returncode, _args)
+  13:35:38 BIOCONDA INFO (OUT) subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/bioconductor-sictools_1702301527486/work/conda_build.sh']' returned non-zero exit status 1.
diff --git a/recipes/bioconductor-sictools/meta.yaml b/recipes/bioconductor-sictools/meta.yaml
index ffcbe6f486b4f..12a5dc2cb5ca8 100644
--- a/recipes/bioconductor-sictools/meta.yaml
+++ b/recipes/bioconductor-sictools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "SICtools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8b83944eeafc064c998ad1c3acfa3b0e
+  md5: 1df54634cb8bc00e60963b0ca10886d2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sictools", max_pin="x.x") }}'
 # Suggests: knitr, RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - 'r-doparallel >=1.0.8'
     - 'r-matrixstats >=0.10.0'
@@ -31,20 +32,16 @@ requirements:
     - 'r-stringr >=0.6.2'
     - libblas
     - liblapack
-    - zlib
-    - ncurses
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - 'r-doparallel >=1.0.8'
     - 'r-matrixstats >=0.10.0'
     - 'r-plyr >=1.8.3'
     - 'r-stringr >=0.6.2'
-    - zlib
-    - ncurses
   build:
     - {{ compiler('c') }}
     - make
diff --git a/recipes/bioconductor-sift.hsapiens.dbsnp132/meta.yaml b/recipes/bioconductor-sift.hsapiens.dbsnp132/meta.yaml
index c7d63153dc4b1..63f65568f82da 100644
--- a/recipes/bioconductor-sift.hsapiens.dbsnp132/meta.yaml
+++ b/recipes/bioconductor-sift.hsapiens.dbsnp132/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.2" %}
 {% set name = "SIFT.Hsapiens.dbSNP132" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,24 +13,25 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: c374f0bf4c99357cfe99e0b192c00d75
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sift.hsapiens.dbsnp132", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - 'r-rsqlite >=0.11.0'
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - 'r-rsqlite >=0.11.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-sift.hsapiens.dbsnp137/meta.yaml b/recipes/bioconductor-sift.hsapiens.dbsnp137/meta.yaml
index c422913f4d133..f0f7108912e36 100644
--- a/recipes/bioconductor-sift.hsapiens.dbsnp137/meta.yaml
+++ b/recipes/bioconductor-sift.hsapiens.dbsnp137/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.0.0" %}
 {% set name = "SIFT.Hsapiens.dbSNP137" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,24 +13,25 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 3c3e73f826399af5ff368d1aab12cfd1
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sift.hsapiens.dbsnp137", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - 'r-rsqlite >=0.11.0'
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - 'r-rsqlite >=0.11.0'
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-sigcheck/meta.yaml b/recipes/bioconductor-sigcheck/meta.yaml
index c2a7a7a09e7c3..d0bf27e007237 100644
--- a/recipes/bioconductor-sigcheck/meta.yaml
+++ b/recipes/bioconductor-sigcheck/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.32.0" %}
+{% set version = "2.34.0" %}
 {% set name = "SigCheck" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a66d9ee5f9009f29346bdfca24346288
+  md5: 0c956bbf06058a0a494f887fbdf6549f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sigcheck", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, breastCancerNKI, qusage
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-mlinterfaces >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-mlinterfaces >=1.82.0,<1.83.0'
     - r-base
     - r-e1071
     - r-survival
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-mlinterfaces >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-mlinterfaces >=1.82.0,<1.83.0'
     - r-base
     - r-e1071
     - r-survival
diff --git a/recipes/bioconductor-sigfeature/meta.yaml b/recipes/bioconductor-sigfeature/meta.yaml
index 0f6d1c3a4c5b4..9c09d518d848e 100644
--- a/recipes/bioconductor-sigfeature/meta.yaml
+++ b/recipes/bioconductor-sigfeature/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "sigFeature" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 63592ed4b877d9961ce62abd53541a7c
+  md5: 96249637034c39dc1924cd78c1a0ba58
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sigfeature", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocviews >=1.68.0,<1.69.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocviews >=1.70.0,<1.71.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-e1071
     - r-matrix
@@ -33,9 +34,9 @@ requirements:
     - r-rcolorbrewer
     - r-sparsem
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocviews >=1.68.0,<1.69.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocviews >=1.70.0,<1.71.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-e1071
     - r-matrix
diff --git a/recipes/bioconductor-sigfuge/meta.yaml b/recipes/bioconductor-sigfuge/meta.yaml
index 2966d00f7cd0c..b5a313692d97c 100644
--- a/recipes/bioconductor-sigfuge/meta.yaml
+++ b/recipes/bioconductor-sigfuge/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "SigFuge" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 474286ce316b812744a7f7b2ed8a49d4
+  md5: cb03ecb39c2df4b4f5e1b49f8ba5d594
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sigfuge", max_pin="x.x") }}'
   noarch: generic
 # Suggests: org.Hs.eg.db, prebsdata, Rsamtools (>= 1.17.0), TxDb.Hsapiens.UCSC.hg19.knownGene, BiocStyle
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-ggplot2
     - r-matlab
     - r-reshape
     - r-sigclust
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - r-ggplot2
     - r-matlab
diff --git a/recipes/bioconductor-siggenes/meta.yaml b/recipes/bioconductor-siggenes/meta.yaml
index ab2e1e6eaead6..7b70075ae924b 100644
--- a/recipes/bioconductor-siggenes/meta.yaml
+++ b/recipes/bioconductor-siggenes/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.74.0" %}
+{% set version = "1.76.0" %}
 {% set name = "siggenes" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: a4eb4fbc80332b7d40a1c74e92243af6
+  md5: ae9899f2a3587a423169a27502868709
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-siggenes", max_pin="x.x") }}'
   noarch: generic
 # Suggests: affy, annotate, genefilter, KernSmooth
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
     - 'r-scrime >=1.2.5'
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
     - r-base
     - 'r-scrime >=1.2.5'
 test:
diff --git a/recipes/bioconductor-sights/meta.yaml b/recipes/bioconductor-sights/meta.yaml
index c98adcfb1b0ac..6e11b18225760 100644
--- a/recipes/bioconductor-sights/meta.yaml
+++ b/recipes/bioconductor-sights/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "sights" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 290c43f8616319bdca706779a2e7ad05
+  md5: 566e869c884c7b12f1a42a9dbaeec05a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sights", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, ggthemes, gridExtra, xlsx
 requirements:
   host:
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
     - 'r-ggplot2 >=2.0'
     - 'r-lattice >=0.2'
     - 'r-mass >=7.3'
     - 'r-reshape2 >=1.4'
   run:
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
     - 'r-ggplot2 >=2.0'
     - 'r-lattice >=0.2'
diff --git a/recipes/bioconductor-signaturesearch/meta.yaml b/recipes/bioconductor-signaturesearch/meta.yaml
index 561e436f8b679..f1ab00dc3f3f6 100644
--- a/recipes/bioconductor-signaturesearch/meta.yaml
+++ b/recipes/bioconductor-signaturesearch/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "signatureSearch" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6a35d0c11a34a2880ca935789599bd02
+  md5: 9585172c7764e755ee67aee1c5a1adba
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-signaturesearch", max_pin="x.x") }}'
 # Suggests: knitr, testthat, rmarkdown, BiocStyle, signatureSearchData, DT
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-reactome.db >=1.84.0,<1.85.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-reactome.db >=1.86.0,<1.87.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -53,21 +54,21 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-reactome.db >=1.84.0,<1.85.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-reactome.db >=1.86.0,<1.87.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-dplyr
diff --git a/recipes/bioconductor-signaturesearchdata/meta.yaml b/recipes/bioconductor-signaturesearchdata/meta.yaml
index 25ed2008fb3b8..c53b81dce19ae 100644
--- a/recipes/bioconductor-signaturesearchdata/meta.yaml
+++ b/recipes/bioconductor-signaturesearchdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "signatureSearchData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,37 +11,38 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5b3174e0e3af77fea49a107ef423adb3
+  md5: b30a7f1715a7525279c47db6df5ad995
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-signaturesearchdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
     - r-base
     - r-dplyr
     - r-magrittr
     - r-r.utils
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
     - r-base
     - r-dplyr
     - r-magrittr
     - r-r.utils
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-signaturesearchdata/post-link.sh b/recipes/bioconductor-signaturesearchdata/post-link.sh
index 3151921fff67c..505a2c08ce197 100644
--- a/recipes/bioconductor-signaturesearchdata/post-link.sh
+++ b/recipes/bioconductor-signaturesearchdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "signaturesearchdata-1.14.0"
+installBiocDataPackage.sh "signaturesearchdata-1.16.0"
diff --git a/recipes/bioconductor-signer/meta.yaml b/recipes/bioconductor-signer/meta.yaml
index 0619c6c177669..8c8f0364b486a 100644
--- a/recipes/bioconductor-signer/meta.yaml
+++ b/recipes/bioconductor-signer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.2.1" %}
+{% set version = "2.4.0" %}
 {% set name = "signeR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 90a383b5dfb52f507eec10ac958b1c53
+  md5: 36ca120021611cebddf20efa74c6bbf7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-signer", max_pin="x.x") }}'
 # Suggests: knitr, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg38, rmarkdown
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-ada
     - r-base
     - r-bsplus
@@ -77,15 +78,15 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-ada
     - r-base
     - r-bsplus
@@ -141,7 +142,7 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: GPL-3
   summary: 'Empirical Bayesian approach to mutational signature discovery'
-  description: 'The signeR package provides an empirical Bayesian approach to mutational signature discovery. It is designed to analyze single nucleotide variaton (SNV) counts in cancer genomes, but can also be applied to other features as well. Functionalities to characterize signatures or genome samples according to exposure patterns are also provided.'
+  description: 'The signeR package provides an empirical Bayesian approach to mutational signature discovery. It is designed to analyze single nucleotide variation (SNV) counts in cancer genomes, but can also be applied to other features as well. Functionalities to characterize signatures or genome samples according to exposure patterns are also provided.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
   identifiers:
diff --git a/recipes/bioconductor-signifinder/meta.yaml b/recipes/bioconductor-signifinder/meta.yaml
index 5699d1c83b780..13db755d08530 100644
--- a/recipes/bioconductor-signifinder/meta.yaml
+++ b/recipes/bioconductor-signifinder/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.1" %}
+{% set version = "1.4.0" %}
 {% set name = "signifinder" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: aa726b8d8e8127426f3eb6f883b36bed
+  md5: f24a46dbbbc9b688450e9f2a0e2e221e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-signifinder", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, kableExtra, testthat (>= 3.0.0), edgeR, limma
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-consensusov >=1.22.0,<1.23.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-gsva >=1.48.0,<1.49.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-consensusov >=1.24.0,<1.25.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-gsva >=1.50.0,<1.51.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.17.0,<3.18.0'
+    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.18.0,<3.19.0'
     - r-base
     - r-cowplot
     - r-dgeobj.utils
@@ -48,17 +50,18 @@ requirements:
     - r-survminer
     - r-viridis
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-consensusov >=1.22.0,<1.23.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-gsva >=1.48.0,<1.49.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-consensusov >=1.24.0,<1.25.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-gsva >=1.50.0,<1.51.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.17.0,<3.18.0'
+    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.18.0,<3.19.0'
     - r-base
     - r-cowplot
     - r-dgeobj.utils
diff --git a/recipes/bioconductor-sigspack/meta.yaml b/recipes/bioconductor-sigspack/meta.yaml
index 46326eaad55d4..4b9d64c027d97 100644
--- a/recipes/bioconductor-sigspack/meta.yaml
+++ b/recipes/bioconductor-sigspack/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "SigsPack" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cb7c27412e07f6a833b6a46af887b508
+  md5: 5fde29d53a470944ef9a4ba82bcca75d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sigspack", max_pin="x.x") }}'
   noarch: generic
 # Suggests: IRanges, BSgenome.Hsapiens.UCSC.hg19, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - 'r-quadprog >=1.5-5'
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - 'r-quadprog >=1.5-5'
 test:
diff --git a/recipes/bioconductor-sigsquared/meta.yaml b/recipes/bioconductor-sigsquared/meta.yaml
index 135799c1f6676..2970f841bef59 100644
--- a/recipes/bioconductor-sigsquared/meta.yaml
+++ b/recipes/bioconductor-sigsquared/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "sigsquared" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 9d98cbf7704581f4c430ba2b5e8a00ec
+  md5: f7dfbb4c066df8fe146b2b73f8180195
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sigsquared", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-survival
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-survival
 test:
diff --git a/recipes/bioconductor-sim/meta.yaml b/recipes/bioconductor-sim/meta.yaml
index a3b8f14087b87..b5f1d18e0e31c 100644
--- a/recipes/bioconductor-sim/meta.yaml
+++ b/recipes/bioconductor-sim/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.70.0" %}
+{% set version = "1.72.0" %}
 {% set name = "SIM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d3c5c65ce115197dca40594a4b16b539
+  md5: 72c2ca38244f4d53842bece2abdfadee
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sim", max_pin="x.x") }}'
 # Suggests: biomaRt, RColorBrewer
 requirements:
   host:
-    - 'bioconductor-globaltest >=5.54.0,<5.55.0'
-    - 'bioconductor-quantsmooth >=1.66.0,<1.67.0'
+    - 'bioconductor-globaltest >=5.56.0,<5.57.0'
+    - 'bioconductor-quantsmooth >=1.68.0,<1.69.0'
     - r-base
     - r-quantreg
     - libblas
     - liblapack
   run:
-    - 'bioconductor-globaltest >=5.54.0,<5.55.0'
-    - 'bioconductor-quantsmooth >=1.66.0,<1.67.0'
+    - 'bioconductor-globaltest >=5.56.0,<5.57.0'
+    - 'bioconductor-quantsmooth >=1.68.0,<1.69.0'
     - r-base
     - r-quantreg
   build:
diff --git a/recipes/bioconductor-simat/meta.yaml b/recipes/bioconductor-simat/meta.yaml
index 0eea27535c90e..c8c53947eb7d9 100644
--- a/recipes/bioconductor-simat/meta.yaml
+++ b/recipes/bioconductor-simat/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "SIMAT" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,16 +11,17 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a58d1eff9379ec914d5895269592ca8e
+  md5: 4482fbb67b81a5c0c2ed553f6b44faa2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-simat", max_pin="x.x") }}'
 # Suggests: RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
     - r-base
     - r-ggplot2
     - 'r-rcpp >=0.11.3'
@@ -28,7 +29,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
     - r-base
     - r-ggplot2
     - 'r-rcpp >=0.11.3'
diff --git a/recipes/bioconductor-simbenchdata/meta.yaml b/recipes/bioconductor-simbenchdata/meta.yaml
index 777409b6375f3..a21401c5931bd 100644
--- a/recipes/bioconductor-simbenchdata/meta.yaml
+++ b/recipes/bioconductor-simbenchdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "SimBenchData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5b2d78e96922a7935cbe5ba91a129b0f
+  md5: c801056ea68c668cd98230e8956d551b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-simbenchdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, Seurat
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-simbenchdata/post-link.sh b/recipes/bioconductor-simbenchdata/post-link.sh
index f1b9f38693847..29b22974ec81f 100644
--- a/recipes/bioconductor-simbenchdata/post-link.sh
+++ b/recipes/bioconductor-simbenchdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "simbenchdata-1.8.0"
+installBiocDataPackage.sh "simbenchdata-1.10.0"
diff --git a/recipes/bioconductor-simbindprofiles/meta.yaml b/recipes/bioconductor-simbindprofiles/meta.yaml
index 52de2f9221cf6..5ad27d6918d6d 100644
--- a/recipes/bioconductor-simbindprofiles/meta.yaml
+++ b/recipes/bioconductor-simbindprofiles/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "SimBindProfiles" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fa3f1e8271ff94bd2590512f9c80073d
+  md5: 9785a8acda5c3423edaefd09f14e6ca2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-simbindprofiles", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-ringo >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-ringo >=1.66.0,<1.67.0'
     - r-base
     - r-mclust
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-ringo >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-ringo >=1.66.0,<1.67.0'
     - r-base
     - r-mclust
 test:
diff --git a/recipes/bioconductor-simbu/meta.yaml b/recipes/bioconductor-simbu/meta.yaml
index cc46b06a2ea82..122d2cdc3c9af 100644
--- a/recipes/bioconductor-simbu/meta.yaml
+++ b/recipes/bioconductor-simbu/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "SimBu" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1fef87275d51f572073a477f69bfbb0f
+  md5: 50f7ac0bde39513f3ca816495b7ec9fc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-simbu", max_pin="x.x") }}'
   noarch: generic
 # Suggests: curl, knitr, matrixStats, rmarkdown, Seurat, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
-    - 'bioconductor-sparsematrixstats >=1.12.0,<1.13.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
+    - 'bioconductor-sparsematrixstats >=1.14.0,<1.15.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-dplyr
@@ -37,11 +38,11 @@ requirements:
     - r-reticulate
     - r-tidyr
   run:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
-    - 'bioconductor-sparsematrixstats >=1.12.0,<1.13.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
+    - 'bioconductor-sparsematrixstats >=1.14.0,<1.15.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-dplyr
diff --git a/recipes/bioconductor-simd/meta.yaml b/recipes/bioconductor-simd/meta.yaml
index f268f9b562fe7..a50dbbec80a87 100644
--- a/recipes/bioconductor-simd/meta.yaml
+++ b/recipes/bioconductor-simd/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "SIMD" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2931556d02416a254a308886a78297fe
+  md5: 3fa4a3f26b9c42aa5026f0a22956195b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-simd", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr,rmarkdown
 requirements:
   host:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-methylmnm >=1.38.0,<1.39.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-methylmnm >=1.40.0,<1.41.0'
     - r-base
     - r-statmod
     - libblas
     - liblapack
   run:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-methylmnm >=1.38.0,<1.39.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-methylmnm >=1.40.0,<1.41.0'
     - r-base
     - r-statmod
   build:
diff --git a/recipes/bioconductor-simffpe/meta.yaml b/recipes/bioconductor-simffpe/meta.yaml
index df7db42d051fd..8e72d0c1e17b1 100644
--- a/recipes/bioconductor-simffpe/meta.yaml
+++ b/recipes/bioconductor-simffpe/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "SimFFPE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6741039d6c2006d51a571456d16cf063
+  md5: 95d6710ea184127f659f0c6f7786234c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-simffpe", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-doparallel
     - r-dplyr
     - r-foreach
     - r-truncnorm
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-doparallel
     - r-dplyr
diff --git a/recipes/bioconductor-similarpeak/meta.yaml b/recipes/bioconductor-similarpeak/meta.yaml
index 6860b904508b4..9f2da87d43c8c 100644
--- a/recipes/bioconductor-similarpeak/meta.yaml
+++ b/recipes/bioconductor-similarpeak/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "similaRpeak" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 35dd8b1abb325af118f05e56c1ebdb8f
+  md5: 3d91ba41941b12c9f93e77872e444c4d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-similarpeak", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, knitr, Rsamtools, GenomicAlignments, rtracklayer, rmarkdown, BiocStyle
 requirements:
diff --git a/recipes/bioconductor-simlr/meta.yaml b/recipes/bioconductor-simlr/meta.yaml
index 4851267fb6058..ab2a37047dc77 100644
--- a/recipes/bioconductor-simlr/meta.yaml
+++ b/recipes/bioconductor-simlr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.1" %}
+{% set version = "1.28.0" %}
 {% set name = "SIMLR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7f02d88ffc083881d030ff8f24e2d790
+  md5: 9692308a74c8781b41b55409edf594ce
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-simlr", max_pin="x.x") }}'
 # Suggests: BiocGenerics, BiocStyle, testthat, knitr, igraph
 requirements:
   host:
diff --git a/recipes/bioconductor-simona/build.sh b/recipes/bioconductor-simona/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-simona/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-simona/meta.yaml b/recipes/bioconductor-simona/meta.yaml
new file mode 100644
index 0000000000000..7cbbb253de34d
--- /dev/null
+++ b/recipes/bioconductor-simona/meta.yaml
@@ -0,0 +1,65 @@
+{% set version = "1.0.2" %}
+{% set name = "simona" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
+  md5: be691f3b2b1908a5af3180d4c9e47232
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-simona", max_pin="x.x") }}'
+# Suggests: knitr, testthat, BiocManager, GO.db, org.Hs.eg.db, proxyC, AnnotationDbi, Matrix, DiagrammeR, ragg, png
+# SystemRequirements: Perl, Java
+requirements:
+  host:
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - r-base
+    - r-circlize
+    - r-getoptlong
+    - r-globaloptions
+    - r-igraph
+    - r-matrixstats
+    - r-polychrome
+    - r-rcpp
+    - 'r-xml2 >=1.3.3'
+    - libblas
+    - liblapack
+    - 'perl >=5.6.0'
+  run:
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - r-base
+    - r-circlize
+    - r-getoptlong
+    - r-globaloptions
+    - r-igraph
+    - r-matrixstats
+    - r-polychrome
+    - r-rcpp
+    - 'r-xml2 >=1.3.3'
+    - 'perl >=5.6.0'
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - make
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: 'MIT + file LICENSE'
+  summary: 'Semantic Similarity in Bio-Ontologies'
+  description: 'This package implements infrastructures for ontology analysis by offering efficient data structures, fast ontology traversal methods, and elegant visualizations. It provides a robust toolbox supporting over 70 methods for semantic similarity analysis.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-simpintlists/meta.yaml b/recipes/bioconductor-simpintlists/meta.yaml
index 12cae66ad17f9..a51d0edccc031 100644
--- a/recipes/bioconductor-simpintlists/meta.yaml
+++ b/recipes/bioconductor-simpintlists/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "simpIntLists" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: eb06f66a10c4e02738fdfaff769c2dfd
+  md5: 9dbe0a1f390843a49bb11d05ac5f2e28
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-simpintlists", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-simpintlists/post-link.sh b/recipes/bioconductor-simpintlists/post-link.sh
index 9a5168f1dc3f2..20fa4fcd46724 100644
--- a/recipes/bioconductor-simpintlists/post-link.sh
+++ b/recipes/bioconductor-simpintlists/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "simpintlists-1.36.0"
+installBiocDataPackage.sh "simpintlists-1.38.0"
diff --git a/recipes/bioconductor-simpleseg/meta.yaml b/recipes/bioconductor-simpleseg/meta.yaml
index 75e64bc6223f9..37f94dc135935 100644
--- a/recipes/bioconductor-simpleseg/meta.yaml
+++ b/recipes/bioconductor-simpleseg/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "simpleSeg" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 341edd78b0499ac89cb89fe2ed0882f4
+  md5: d0e40e9be3d3e9c8a16d0390040f3da8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-simpleseg", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, testthat (>= 3.0.0), knitr, ggplot2
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-cytomapper >=1.12.0,<1.13.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-cytomapper >=1.14.0,<1.15.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-spatstat.geom
     - r-terra
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-cytomapper >=1.12.0,<1.13.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-cytomapper >=1.14.0,<1.15.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-spatstat.geom
     - r-terra
diff --git a/recipes/bioconductor-simplifyenrichment/meta.yaml b/recipes/bioconductor-simplifyenrichment/meta.yaml
index 4bd40b28cab06..83eeed1cbd3c8 100644
--- a/recipes/bioconductor-simplifyenrichment/meta.yaml
+++ b/recipes/bioconductor-simplifyenrichment/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "simplifyEnrichment" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 00527c9634ea2aa7918e582ad61af42c
+  md5: d54c7188ca88dd43802296650e5b80e1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-simplifyenrichment", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, ggplot2, cowplot, mclust, apcluster, MCL, dbscan, igraph, gridExtra, dynamicTreeCut, testthat, gridGraphics, clusterProfiler, msigdbr, DOSE, DO.db, reactome.db, flexclust, BiocManager, InteractiveComplexHeatmap (>= 0.99.11), shiny, shinydashboard, cola, hu6800.db, rmarkdown, genefilter, gridtext, fpc
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-gosemsim >=2.26.0,<2.27.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-gosemsim >=2.28.0,<2.29.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - r-circlize
     - r-clue
@@ -40,12 +41,12 @@ requirements:
     - r-slam
     - r-tm
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-gosemsim >=2.26.0,<2.27.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-gosemsim >=2.28.0,<2.29.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - r-circlize
     - r-clue
diff --git a/recipes/bioconductor-sincell/meta.yaml b/recipes/bioconductor-sincell/meta.yaml
index 15a94a94e5060..f42dbd1131da1 100644
--- a/recipes/bioconductor-sincell/meta.yaml
+++ b/recipes/bioconductor-sincell/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "sincell" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: ba6ef4928190ede2dd94b4775f66387b
+  md5: 308aa15c851a99b7f345dbd0af122f07
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sincell", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, biomaRt, stringr, monocle
 requirements:
   host:
diff --git a/recipes/bioconductor-single.mtec.transcriptomes/meta.yaml b/recipes/bioconductor-single.mtec.transcriptomes/meta.yaml
index bcaef7e34a460..d9ce115024fa4 100644
--- a/recipes/bioconductor-single.mtec.transcriptomes/meta.yaml
+++ b/recipes/bioconductor-single.mtec.transcriptomes/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "Single.mTEC.Transcriptomes" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 11ebbf5ecaf89f0433719a71a8df67b2
+  md5: 574ee45ff1177688d68e6ae8295e67a2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-single.mtec.transcriptomes", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DESeq2, GenomicRanges, GenomicFeatures, genefilter, statmod, gdata, RColorBrewer, ggplot2, gplots, cluster, clue, grid, gridExtra, ggbio, Gviz, geneplotter, matrixStats, pheatmap, BiocStyle, knitr, BiocParallel
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-single.mtec.transcriptomes/post-link.sh b/recipes/bioconductor-single.mtec.transcriptomes/post-link.sh
index ccdcaffe7f29a..c09b613681aa7 100644
--- a/recipes/bioconductor-single.mtec.transcriptomes/post-link.sh
+++ b/recipes/bioconductor-single.mtec.transcriptomes/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "single.mtec.transcriptomes-1.28.0"
+installBiocDataPackage.sh "single.mtec.transcriptomes-1.30.0"
diff --git a/recipes/bioconductor-single/meta.yaml b/recipes/bioconductor-single/meta.yaml
index 0443a953bc07d..4bde20f315321 100644
--- a/recipes/bioconductor-single/meta.yaml
+++ b/recipes/bioconductor-single/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "single" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 60fe993d492e1e3354f4a4d066cbd78e
+  md5: 61242086622646ed92a4304d33bc1457
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-single", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-dplyr
     - r-reshape2
@@ -33,11 +34,11 @@ requirements:
     - r-stringr
     - r-tidyr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-dplyr
     - r-reshape2
diff --git a/recipes/bioconductor-singlecellexperiment/meta.yaml b/recipes/bioconductor-singlecellexperiment/meta.yaml
index e62fc8618dab0..3f8eefc75d7b5 100644
--- a/recipes/bioconductor-singlecellexperiment/meta.yaml
+++ b/recipes/bioconductor-singlecellexperiment/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "SingleCellExperiment" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0d2806a0547fdcea6688a4d96bdfa5a8
+  md5: ef057b77f40efba992f311486e83448b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-singlecellexperiment", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle, knitr, rmarkdown, Matrix, scRNAseq (>= 2.9.1), Rtsne
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-singlecellmultimodal/meta.yaml b/recipes/bioconductor-singlecellmultimodal/meta.yaml
index 52e2bf35b2f0f..7a3421ef82fa5 100644
--- a/recipes/bioconductor-singlecellmultimodal/meta.yaml
+++ b/recipes/bioconductor-singlecellmultimodal/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.2" %}
+{% set version = "1.14.0" %}
 {% set name = "SingleCellMultiModal" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,43 +11,44 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 599f48321756805173d2069623a0319d
+  md5: e397bc4fbd9ea63f6660758f01d01d38
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-singlecellmultimodal", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, ggplot2, knitr, RaggedExperiment, rmarkdown, scater, scran, UpSetR, uwot
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocbaseutils >=1.2.0,<1.3.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocbaseutils >=1.4.0,<1.5.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocbaseutils >=1.2.0,<1.3.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocbaseutils >=1.4.0,<1.5.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-singlecellmultimodal/post-link.sh b/recipes/bioconductor-singlecellmultimodal/post-link.sh
index a8c1076f77b7e..a9af6b4051d35 100644
--- a/recipes/bioconductor-singlecellmultimodal/post-link.sh
+++ b/recipes/bioconductor-singlecellmultimodal/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "singlecellmultimodal-1.12.2"
+installBiocDataPackage.sh "singlecellmultimodal-1.14.0"
diff --git a/recipes/bioconductor-singlecellsignalr/meta.yaml b/recipes/bioconductor-singlecellsignalr/meta.yaml
index 547b3ca6726fc..65343241fe4ed 100644
--- a/recipes/bioconductor-singlecellsignalr/meta.yaml
+++ b/recipes/bioconductor-singlecellsignalr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "SingleCellSignalR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: bbced887bff155cb16721818e1614e98
+  md5: d00060a859db9cd8c87ce9673cc9d886
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-singlecellsignalr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
     - r-base
     - r-biocmanager
     - r-circlize
@@ -36,10 +37,10 @@ requirements:
     - r-rtsne
     - r-stringr
   run:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
     - r-base
     - r-biocmanager
     - r-circlize
diff --git a/recipes/bioconductor-singlecelltk/meta.yaml b/recipes/bioconductor-singlecelltk/meta.yaml
index 1e6c259583316..9455db96d8260 100644
--- a/recipes/bioconductor-singlecelltk/meta.yaml
+++ b/recipes/bioconductor-singlecelltk/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.10.0" %}
+{% set version = "2.12.0" %}
 {% set name = "singleCellTK" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,55 +11,57 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cd24cbf92dd3998cb79b244fd070910a
+  md5: 5efaf76211a6a623f6657383677474bb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-singlecelltk", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, Rsubread, BiocStyle, knitr, lintr, spelling, org.Mm.eg.db, stringr, kableExtra, shinythemes, shinyBS, shinyjqui, shinyWidgets, shinyFiles, BiocGenerics, RColorBrewer, fastmap (>= 1.1.0), harmony
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-batchelor >=1.16.0,<1.17.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-celda >=1.16.0,<1.17.0'
-    - 'bioconductor-celldex >=1.10.0,<1.11.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-dropletutils >=1.20.0,<1.21.0'
-    - 'bioconductor-eds >=1.2.0,<1.3.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-gsva >=1.48.0,<1.49.0'
-    - 'bioconductor-gsvadata >=1.36.0,<1.37.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-mast >=1.26.0,<1.27.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scdblfinder >=1.14.0,<1.15.0'
-    - 'bioconductor-scds >=1.16.0,<1.17.0'
-    - 'bioconductor-scmerge >=1.16.0,<1.17.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-scrnaseq >=2.14.0,<2.15.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-singler >=2.2.0,<2.3.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
-    - 'bioconductor-tenxpbmcdata >=1.18.0,<1.19.0'
-    - 'bioconductor-trajectoryutils >=1.8.0,<1.9.0'
-    - 'bioconductor-tscan >=1.38.0,<1.39.0'
-    - 'bioconductor-tximport >=1.28.0,<1.29.0'
-    - 'bioconductor-zellkonverter >=1.10.0,<1.11.0'
-    - 'bioconductor-zinbwave >=1.22.0,<1.23.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-batchelor >=1.18.0,<1.19.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-celda >=1.18.0,<1.19.0'
+    - 'bioconductor-celldex >=1.12.0,<1.13.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-dropletutils >=1.22.0,<1.23.0'
+    - 'bioconductor-eds >=1.4.0,<1.5.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-gsva >=1.50.0,<1.51.0'
+    - 'bioconductor-gsvadata >=1.38.0,<1.39.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-mast >=1.28.0,<1.29.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scdblfinder >=1.16.0,<1.17.0'
+    - 'bioconductor-scds >=1.18.0,<1.19.0'
+    - 'bioconductor-scmerge >=1.18.0,<1.19.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-scrnaseq >=2.16.0,<2.17.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-singler >=2.4.0,<2.5.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
+    - 'bioconductor-tenxpbmcdata >=1.20.0,<1.21.0'
+    - 'bioconductor-trajectoryutils >=1.10.0,<1.11.0'
+    - 'bioconductor-tscan >=1.40.0,<1.41.0'
+    - 'bioconductor-tximport >=1.30.0,<1.31.0'
+    - 'bioconductor-zellkonverter >=1.12.0,<1.13.0'
+    - 'bioconductor-zinbwave >=1.24.0,<1.25.0'
+    - r-anndata
     - r-ape
     - r-base
     - r-circlize
@@ -70,7 +72,7 @@ requirements:
     - r-data.table
     - r-dplyr
     - r-dt
-    - r-enrichr
+    - 'r-enrichr >=3.2'
     - r-fields
     - r-ggplot2
     - r-ggplotify
@@ -103,45 +105,46 @@ requirements:
     - r-withr
     - r-yaml
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-batchelor >=1.16.0,<1.17.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-celda >=1.16.0,<1.17.0'
-    - 'bioconductor-celldex >=1.10.0,<1.11.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-dropletutils >=1.20.0,<1.21.0'
-    - 'bioconductor-eds >=1.2.0,<1.3.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-gsva >=1.48.0,<1.49.0'
-    - 'bioconductor-gsvadata >=1.36.0,<1.37.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-mast >=1.26.0,<1.27.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scdblfinder >=1.14.0,<1.15.0'
-    - 'bioconductor-scds >=1.16.0,<1.17.0'
-    - 'bioconductor-scmerge >=1.16.0,<1.17.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-scrnaseq >=2.14.0,<2.15.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-singler >=2.2.0,<2.3.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
-    - 'bioconductor-tenxpbmcdata >=1.18.0,<1.19.0'
-    - 'bioconductor-trajectoryutils >=1.8.0,<1.9.0'
-    - 'bioconductor-tscan >=1.38.0,<1.39.0'
-    - 'bioconductor-tximport >=1.28.0,<1.29.0'
-    - 'bioconductor-zellkonverter >=1.10.0,<1.11.0'
-    - 'bioconductor-zinbwave >=1.22.0,<1.23.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-batchelor >=1.18.0,<1.19.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-celda >=1.18.0,<1.19.0'
+    - 'bioconductor-celldex >=1.12.0,<1.13.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-dropletutils >=1.22.0,<1.23.0'
+    - 'bioconductor-eds >=1.4.0,<1.5.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-gsva >=1.50.0,<1.51.0'
+    - 'bioconductor-gsvadata >=1.38.0,<1.39.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-mast >=1.28.0,<1.29.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scdblfinder >=1.16.0,<1.17.0'
+    - 'bioconductor-scds >=1.18.0,<1.19.0'
+    - 'bioconductor-scmerge >=1.18.0,<1.19.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-scrnaseq >=2.16.0,<2.17.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-singler >=2.4.0,<2.5.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
+    - 'bioconductor-tenxpbmcdata >=1.20.0,<1.21.0'
+    - 'bioconductor-trajectoryutils >=1.10.0,<1.11.0'
+    - 'bioconductor-tscan >=1.40.0,<1.41.0'
+    - 'bioconductor-tximport >=1.30.0,<1.31.0'
+    - 'bioconductor-zellkonverter >=1.12.0,<1.13.0'
+    - 'bioconductor-zinbwave >=1.24.0,<1.25.0'
+    - r-anndata
     - r-ape
     - r-base
     - r-circlize
@@ -152,7 +155,7 @@ requirements:
     - r-data.table
     - r-dplyr
     - r-dt
-    - r-enrichr
+    - 'r-enrichr >=3.2'
     - r-fields
     - r-ggplot2
     - r-ggplotify
diff --git a/recipes/bioconductor-singlemoleculefootprinting/meta.yaml b/recipes/bioconductor-singlemoleculefootprinting/meta.yaml
index 7e1a72be15812..0a49754cd4e22 100644
--- a/recipes/bioconductor-singlemoleculefootprinting/meta.yaml
+++ b/recipes/bioconductor-singlemoleculefootprinting/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "SingleMoleculeFootprinting" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c6f36357ed42062a6d48b14986fb50aa
+  md5: dcdbbace0f6394ce22397640da1dd03f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-singlemoleculefootprinting", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Mmusculus.UCSC.mm10, devtools, ExperimentHub, knitr, parallel, rmarkdown, readr, SingleMoleculeFootprintingData, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-quasr >=1.40.0,<1.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-quasr >=1.42.0,<1.43.0'
     - r-base
     - r-data.table
     - r-plyr
     - r-rcolorbrewer
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-quasr >=1.40.0,<1.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-quasr >=1.42.0,<1.43.0'
     - r-base
     - r-data.table
     - r-plyr
diff --git a/recipes/bioconductor-singlemoleculefootprintingdata/meta.yaml b/recipes/bioconductor-singlemoleculefootprintingdata/meta.yaml
index 9f59a0011a77f..6a54bd67dd050 100644
--- a/recipes/bioconductor-singlemoleculefootprintingdata/meta.yaml
+++ b/recipes/bioconductor-singlemoleculefootprintingdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "SingleMoleculeFootprintingData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fc061d235ffc26615634a650aedd4ac0
+  md5: 451ecbdbb964607afbbe3b778b290246
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-singlemoleculefootprintingdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-singlemoleculefootprintingdata/post-link.sh b/recipes/bioconductor-singlemoleculefootprintingdata/post-link.sh
index 178987ba30e16..a016eff25036b 100644
--- a/recipes/bioconductor-singlemoleculefootprintingdata/post-link.sh
+++ b/recipes/bioconductor-singlemoleculefootprintingdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "singlemoleculefootprintingdata-1.8.0"
+installBiocDataPackage.sh "singlemoleculefootprintingdata-1.10.0"
diff --git a/recipes/bioconductor-singler/meta.yaml b/recipes/bioconductor-singler/meta.yaml
index b0b34a8280eff..8bf68ce82b2b1 100644
--- a/recipes/bioconductor-singler/meta.yaml
+++ b/recipes/bioconductor-singler/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.2.0" %}
+{% set version = "2.4.0" %}
 {% set name = "SingleR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,38 +11,39 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 58b4a0cd038cc175cd966a32f0195f30
+  md5: 83651106a9f823febc5859dff16b48a7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-singler", max_pin="x.x") }}'
 # Suggests: testthat, knitr, rmarkdown, BiocStyle, BiocGenerics, SingleCellExperiment, scuttle, scater, scran, scRNAseq, ggplot2, pheatmap, grDevices, gridExtra, viridis, celldex
 # SystemRequirements: C++17
 requirements:
   host:
-    - 'bioconductor-beachmat >=2.16.0,<2.17.0'
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - r-rcpp
     - libblas
     - liblapack
   run:
-    - 'bioconductor-beachmat >=2.16.0,<2.17.0'
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-beachmat >=2.18.0,<2.19.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - r-rcpp
diff --git a/recipes/bioconductor-singscore/meta.yaml b/recipes/bioconductor-singscore/meta.yaml
index 1266b324ae624..9fb6b973e6177 100644
--- a/recipes/bioconductor-singscore/meta.yaml
+++ b/recipes/bioconductor-singscore/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "singscore" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 79764544605a5b1de41856c897375ad2
+  md5: c3ab598fd61c5bb54a842f9738133d24
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-singscore", max_pin="x.x") }}'
   noarch: generic
 # Suggests: pkgdown, BiocStyle, hexbin, knitr, rmarkdown, testthat, covr
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-ggrepel
@@ -39,12 +40,12 @@ requirements:
     - r-reshape2
     - r-tidyr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-ggrepel
diff --git a/recipes/bioconductor-sipsic/meta.yaml b/recipes/bioconductor-sipsic/meta.yaml
index b89be2584da1b..b7be8ce59689b 100644
--- a/recipes/bioconductor-sipsic/meta.yaml
+++ b/recipes/bioconductor-sipsic/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "SiPSiC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7a749994a28fcd113adbf13ff1fdb9e6
+  md5: e85e0e9b34b9a1e0a93dd653868061ef
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sipsic", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - r-matrix
   run:
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - r-matrix
 test:
diff --git a/recipes/bioconductor-sitadela/meta.yaml b/recipes/bioconductor-sitadela/meta.yaml
index d18d8e6cb05de..81f00ad65a55e 100644
--- a/recipes/bioconductor-sitadela/meta.yaml
+++ b/recipes/bioconductor-sitadela/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "sitadela" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,41 +11,42 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 0a9e771d4e00d39c87e1731fcdaa3999
+  md5: 109b3096c37f30906c8c009097e45c59
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sitadela", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, BSgenome, knitr, rmarkdown, RMySQL, RUnit
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-rsqlite
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-rsqlite
 test:
diff --git a/recipes/bioconductor-sitepath/meta.yaml b/recipes/bioconductor-sitepath/meta.yaml
index 5485b4e65b010..9470f4a08a362 100644
--- a/recipes/bioconductor-sitepath/meta.yaml
+++ b/recipes/bioconductor-sitepath/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "sitePath" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,16 +11,17 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8f713347fa5b74763d60d1f91db80838
+  md5: f5742fbe513f4d3cec29d3d3ee714d13
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sitepath", max_pin="x.x") }}'
 # Suggests: BiocStyle, devtools, knitr, magick, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
     - r-ape
     - r-aplot
     - r-base
@@ -34,7 +35,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
     - r-ape
     - r-aplot
     - r-base
diff --git a/recipes/bioconductor-sizepower/meta.yaml b/recipes/bioconductor-sizepower/meta.yaml
index 49ff669f27e7b..bdcda1851859b 100644
--- a/recipes/bioconductor-sizepower/meta.yaml
+++ b/recipes/bioconductor-sizepower/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.70.0" %}
+{% set version = "1.72.0" %}
 {% set name = "sizepower" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f168cdc6e987a88dda51d11e9fabfa1a
+  md5: 4edf7f08a26ccaa8ae0d08e17b6ef0cd
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sizepower", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-skewr/meta.yaml b/recipes/bioconductor-skewr/meta.yaml
index 8d4c837add74c..4c0aea4605a0e 100644
--- a/recipes/bioconductor-skewr/meta.yaml
+++ b/recipes/bioconductor-skewr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "skewr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c00d797ae9ac8e4b1f40a352409df4cb
+  md5: 083671e386afa1b9ec5766e6a8c50bba
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-skewr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GEOquery, knitr, minfiData
 requirements:
   host:
     - 'bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0'
-    - 'bioconductor-methylumi >=2.46.0,<2.47.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-watermelon >=2.6.0,<2.7.0'
+    - 'bioconductor-methylumi >=2.48.0,<2.49.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-watermelon >=2.8.0,<2.9.0'
     - r-base
     - r-mixsmsn
     - r-rcolorbrewer
   run:
     - 'bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0'
-    - 'bioconductor-methylumi >=2.46.0,<2.47.0'
-    - 'bioconductor-minfi >=1.46.0,<1.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-watermelon >=2.6.0,<2.7.0'
+    - 'bioconductor-methylumi >=2.48.0,<2.49.0'
+    - 'bioconductor-minfi >=1.48.0,<1.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-watermelon >=2.8.0,<2.9.0'
     - r-base
     - r-mixsmsn
     - r-rcolorbrewer
diff --git a/recipes/bioconductor-slalom/meta.yaml b/recipes/bioconductor-slalom/meta.yaml
index cb544f8714472..9a66e56b5ce25 100644
--- a/recipes/bioconductor-slalom/meta.yaml
+++ b/recipes/bioconductor-slalom/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "slalom" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 398713b48231b0d9d9197f0a8af1e6f7
+  md5: cf8b2aec440cd0fd79260a1f0199db2f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-slalom", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, rhdf5, rmarkdown, scater, testthat
 requirements:
   host:
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bh
     - r-ggplot2
@@ -32,9 +33,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-bh
     - r-ggplot2
diff --git a/recipes/bioconductor-slingshot/meta.yaml b/recipes/bioconductor-slingshot/meta.yaml
index c9b05a6884e98..6031c6d4802c9 100644
--- a/recipes/bioconductor-slingshot/meta.yaml
+++ b/recipes/bioconductor-slingshot/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.8.0" %}
+{% set version = "2.10.0" %}
 {% set name = "slingshot" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 2f610f3a1f4538cff7e7f17240e2c3fb
+  md5: 556fe5835a602547c3475065eb5c11d0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-slingshot", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, BiocStyle, clusterExperiment, DelayedMatrixStats, knitr, mclust, mgcv, RColorBrewer, rgl, rmarkdown, testthat, uwot, covr
 requirements:
   host:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-trajectoryutils >=1.8.0,<1.9.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-trajectoryutils >=1.10.0,<1.11.0'
     - r-base
     - r-igraph
     - r-matrixstats
     - 'r-princurve >=2.0.4'
   run:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-trajectoryutils >=1.8.0,<1.9.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-trajectoryutils >=1.10.0,<1.11.0'
     - r-base
     - r-igraph
     - r-matrixstats
diff --git a/recipes/bioconductor-slqpcr/meta.yaml b/recipes/bioconductor-slqpcr/meta.yaml
index d802eb5b5b6be..51064b62afbb9 100644
--- a/recipes/bioconductor-slqpcr/meta.yaml
+++ b/recipes/bioconductor-slqpcr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.66.0" %}
+{% set version = "1.68.0" %}
 {% set name = "SLqPCR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b7929611dce4a5093abfd58b6df35039
+  md5: 72759fb6b62f3852f458e695318c0f6f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-slqpcr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RColorBrewer
 requirements:
diff --git a/recipes/bioconductor-smad/meta.yaml b/recipes/bioconductor-smad/meta.yaml
index 138e48d614390..1fe978fb29b01 100644
--- a/recipes/bioconductor-smad/meta.yaml
+++ b/recipes/bioconductor-smad/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "SMAD" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c224400a2f1d4715e3a4274544b34915
+  md5: 65f0eba6ed0bf086797b95b2c9da6dd6
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-smad", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, testthat, BiocStyle
 requirements:
   host:
diff --git a/recipes/bioconductor-smap/meta.yaml b/recipes/bioconductor-smap/meta.yaml
index fa97b77650cb6..85c8a5cbef687 100644
--- a/recipes/bioconductor-smap/meta.yaml
+++ b/recipes/bioconductor-smap/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.64.0" %}
+{% set version = "1.66.0" %}
 {% set name = "SMAP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9e90b812af45d9a171b490e282d28f91
+  md5: f29ffdead8f34c2f531dd7ea764febe0
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-smap", max_pin="x.x") }}'
 requirements:
   host:
     - r-base
diff --git a/recipes/bioconductor-smite/meta.yaml b/recipes/bioconductor-smite/meta.yaml
index 8084f012aca37..84c7ff35a230a 100644
--- a/recipes/bioconductor-smite/meta.yaml
+++ b/recipes/bioconductor-smite/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "SMITE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 611558066283955f055323c81446ec75
+  md5: 47c578785a426c3c7850880ed58033e8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-smite", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-bionet >=1.60.0,<1.61.0'
-    - 'bioconductor-genelendatabase >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-goseq >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-reactome.db >=1.84.0,<1.85.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-bionet >=1.62.0,<1.63.0'
+    - 'bioconductor-genelendatabase >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-goseq >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-reactome.db >=1.86.0,<1.87.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - r-hmisc
@@ -39,17 +40,17 @@ requirements:
     - r-plyr
     - r-scales
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-bionet >=1.60.0,<1.61.0'
-    - 'bioconductor-genelendatabase >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-goseq >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-reactome.db >=1.84.0,<1.85.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-bionet >=1.62.0,<1.63.0'
+    - 'bioconductor-genelendatabase >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-goseq >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-reactome.db >=1.86.0,<1.87.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - r-hmisc
diff --git a/recipes/bioconductor-smokingmouse/meta.yaml b/recipes/bioconductor-smokingmouse/meta.yaml
new file mode 100644
index 0000000000000..95d226795b7e7
--- /dev/null
+++ b/recipes/bioconductor-smokingmouse/meta.yaml
@@ -0,0 +1,38 @@
+{% set version = "1.0.0" %}
+{% set name = "smokingMouse" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 0c2fad6bf0e911ae8c140c02bc29150e
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-smokingmouse", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: ExperimentHub, AnnotationHubData, BiocStyle, covr, ExperimentHubData, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 3.0.0)
+requirements:
+  host:
+    - r-base
+  run:
+    - r-base
+    - curl
+    - 'bioconductor-data-packages >=20231203'
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'Provides access to smokingMouse project data'
+  description: 'This is an ExperimentHub package that provides access to the data at the gene, exon, transcript and junction level used in the analyses of the smokingMouse project. See https://github.com/LieberInstitute/smokingMouse_Indirects. This datasets contain the expression counts of genes, transcripts, exons and exon-exon junctions across 208 mice samples from pup and adult brains and adult blood. They also contain relevant information of these samples and features, such as conditions, QC metrics and if they were used after filtering steps and also if the features were differently expressed in the different experiments.'
+
diff --git a/recipes/bioconductor-smokingmouse/post-link.sh b/recipes/bioconductor-smokingmouse/post-link.sh
new file mode 100644
index 0000000000000..d023daf8a973e
--- /dev/null
+++ b/recipes/bioconductor-smokingmouse/post-link.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+installBiocDataPackage.sh "smokingmouse-1.0.0"
diff --git a/recipes/bioconductor-smokingmouse/pre-unlink.sh b/recipes/bioconductor-smokingmouse/pre-unlink.sh
new file mode 100644
index 0000000000000..aa46890e613d8
--- /dev/null
+++ b/recipes/bioconductor-smokingmouse/pre-unlink.sh
@@ -0,0 +1 @@
+R CMD REMOVE --library=$PREFIX/lib/R/library/ smokingMouse
diff --git a/recipes/bioconductor-snadata/meta.yaml b/recipes/bioconductor-snadata/meta.yaml
index e787901ae7435..326d0f4f2d6e1 100644
--- a/recipes/bioconductor-snadata/meta.yaml
+++ b/recipes/bioconductor-snadata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "SNAData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3d83f5e312b308aacb8c9c83d3226115
+  md5: bfbd447afa550db44aa1db55e227cc10
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-snadata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Rgraphviz
 requirements:
   host:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
   run:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-snadata/post-link.sh b/recipes/bioconductor-snadata/post-link.sh
index 2b6df30c5257c..15572eae53e04 100644
--- a/recipes/bioconductor-snadata/post-link.sh
+++ b/recipes/bioconductor-snadata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "snadata-1.46.0"
+installBiocDataPackage.sh "snadata-1.48.0"
diff --git a/recipes/bioconductor-snagee/meta.yaml b/recipes/bioconductor-snagee/meta.yaml
index 1834a5bc44880..88fa7034220c6 100644
--- a/recipes/bioconductor-snagee/meta.yaml
+++ b/recipes/bioconductor-snagee/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "SNAGEE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 352732bbf9406a70370117c7ac521fa5
+  md5: faadcab23b170f71a29ac7fd67b2a5d8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-snagee", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ALL, hgu95av2.db
 requirements:
   host:
-    - 'bioconductor-snageedata >=1.36.0,<1.37.0'
+    - 'bioconductor-snageedata >=1.38.0,<1.39.0'
     - r-base
   run:
-    - 'bioconductor-snageedata >=1.36.0,<1.37.0'
+    - 'bioconductor-snageedata >=1.38.0,<1.39.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-snageedata/meta.yaml b/recipes/bioconductor-snageedata/meta.yaml
index 45c4aa8bef0f0..06c4621e7b240 100644
--- a/recipes/bioconductor-snageedata/meta.yaml
+++ b/recipes/bioconductor-snageedata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "SNAGEEdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e7786160ad882aea9132d3fb2ba77789
+  md5: bfd0a2689cb9ac612cb2f8995c3a03d5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-snageedata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ALL, hgu95av2.db, SNAGEE
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-snageedata/post-link.sh b/recipes/bioconductor-snageedata/post-link.sh
index a2bcecbea365f..5e8bb8a522c3c 100644
--- a/recipes/bioconductor-snageedata/post-link.sh
+++ b/recipes/bioconductor-snageedata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "snageedata-1.36.0"
+installBiocDataPackage.sh "snageedata-1.38.0"
diff --git a/recipes/bioconductor-snapcgh/meta.yaml b/recipes/bioconductor-snapcgh/meta.yaml
index d34947ac5d13e..e534b5ccc7b74 100644
--- a/recipes/bioconductor-snapcgh/meta.yaml
+++ b/recipes/bioconductor-snapcgh/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.70.0" %}
+{% set version = "1.72.0" %}
 {% set name = "snapCGH" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7484b0baccb980c615fb9ecd6fb86ab9
+  md5: d21dbae207756cb76e04cadbcfa8b086
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-snapcgh", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-acgh >=1.78.0,<1.79.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-glad >=2.64.0,<2.65.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-tilingarray >=1.78.0,<1.79.0'
+    - 'bioconductor-acgh >=1.80.0,<1.81.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-glad >=2.66.0,<2.67.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-tilingarray >=1.80.0,<1.81.0'
     - r-base
     - r-cluster
     - libblas
     - liblapack
   run:
-    - 'bioconductor-acgh >=1.78.0,<1.79.0'
-    - 'bioconductor-dnacopy >=1.74.0,<1.75.0'
-    - 'bioconductor-glad >=2.64.0,<2.65.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-tilingarray >=1.78.0,<1.79.0'
+    - 'bioconductor-acgh >=1.80.0,<1.81.0'
+    - 'bioconductor-dnacopy >=1.76.0,<1.77.0'
+    - 'bioconductor-glad >=2.66.0,<2.67.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-tilingarray >=1.80.0,<1.81.0'
     - r-base
     - r-cluster
   build:
diff --git a/recipes/bioconductor-snapcount/meta.yaml b/recipes/bioconductor-snapcount/meta.yaml
index 8ec421e639259..e40c86fed787a 100644
--- a/recipes/bioconductor-snapcount/meta.yaml
+++ b/recipes/bioconductor-snapcount/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "snapcount" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 1a80d0c735e1b5059c4f0376f75fa61a
+  md5: 8efa036bfe73acf9c31a279b3c365ae7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-snapcount", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocManager, bit64, covr, knitcitations, knitr (>= 1.6), devtools, BiocStyle (>= 2.5.19), rmarkdown (>= 0.9.5), testthat (>= 2.1.0)
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - r-data.table
@@ -36,9 +37,9 @@ requirements:
     - r-rlang
     - r-stringr
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - r-data.table
diff --git a/recipes/bioconductor-snifter/meta.yaml b/recipes/bioconductor-snifter/meta.yaml
index 8de266ad1bedc..2da36a360a549 100644
--- a/recipes/bioconductor-snifter/meta.yaml
+++ b/recipes/bioconductor-snifter/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "snifter" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 105db4c0e2b10570d93fe359524beccc
+  md5: a6cfc8a05013cd2d050a1adba2b3fe4d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-snifter", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, ggplot2, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
     - r-assertthat
     - r-base
     - r-irlba
     - r-reticulate
   run:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
     - r-assertthat
     - r-base
     - r-irlba
diff --git a/recipes/bioconductor-snm/meta.yaml b/recipes/bioconductor-snm/meta.yaml
index 5ec09c740d1f3..16a1786338618 100644
--- a/recipes/bioconductor-snm/meta.yaml
+++ b/recipes/bioconductor-snm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "snm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 1585a1bef1fe800b8ce9fd1dab014e9b
+  md5: 103ab8eb4cca35d12c53c48615ebd5da
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-snm", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-snpediar/meta.yaml b/recipes/bioconductor-snpediar/meta.yaml
index 682d2d3ff2b7e..163a5977bdb6d 100644
--- a/recipes/bioconductor-snpediar/meta.yaml
+++ b/recipes/bioconductor-snpediar/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "SNPediaR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4335833edff43f6406eeed4294fa83ff
+  md5: 25d5eec5081ccfac687eba26102eb826
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-snpediar", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat
 requirements:
diff --git a/recipes/bioconductor-snphood/meta.yaml b/recipes/bioconductor-snphood/meta.yaml
index c3cddcd6c75bf..9b8303698581a 100644
--- a/recipes/bioconductor-snphood/meta.yaml
+++ b/recipes/bioconductor-snphood/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "SNPhood" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 95aecf97b2fc6fda26705f4c0b7f83b9
+  md5: f5a30ae405bebdb97e51cb2782debcbf
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-snphood", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, pryr, rmarkdown, SNPhoodData, corrplot
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-checkmate
     - r-cluster
@@ -43,17 +44,17 @@ requirements:
     - r-reshape2
     - r-scales
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-checkmate
     - r-cluster
diff --git a/recipes/bioconductor-snphooddata/meta.yaml b/recipes/bioconductor-snphooddata/meta.yaml
index 13452dc4c61f6..b7e1b79ba3652 100644
--- a/recipes/bioconductor-snphooddata/meta.yaml
+++ b/recipes/bioconductor-snphooddata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "SNPhoodData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fbc9419fda8d78b06f76e62df5639ae9
+  md5: 72ac86008c225c71df946cc8a7de1fa1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-snphooddata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle,knitr,rmarkdown
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-snphooddata/post-link.sh b/recipes/bioconductor-snphooddata/post-link.sh
index fdf543333018e..7fd81f93fc969 100644
--- a/recipes/bioconductor-snphooddata/post-link.sh
+++ b/recipes/bioconductor-snphooddata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "snphooddata-1.30.0"
+installBiocDataPackage.sh "snphooddata-1.32.0"
diff --git a/recipes/bioconductor-snplocs.hsapiens.dbsnp144.grch37/meta.yaml b/recipes/bioconductor-snplocs.hsapiens.dbsnp144.grch37/meta.yaml
index 327d00aae5fcf..9e6b83fb2ab62 100644
--- a/recipes/bioconductor-snplocs.hsapiens.dbsnp144.grch37/meta.yaml
+++ b/recipes/bioconductor-snplocs.hsapiens.dbsnp144.grch37/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.20" %}
 {% set name = "SNPlocs.Hsapiens.dbSNP144.GRCh37" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,31 +13,32 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: bd338bb583cacc18f210e871dac79ebf
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-snplocs.hsapiens.dbsnp144.grch37", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg19
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-snplocs.hsapiens.dbsnp144.grch38/meta.yaml b/recipes/bioconductor-snplocs.hsapiens.dbsnp144.grch38/meta.yaml
index d54fe98d34148..62e24e4082892 100644
--- a/recipes/bioconductor-snplocs.hsapiens.dbsnp144.grch38/meta.yaml
+++ b/recipes/bioconductor-snplocs.hsapiens.dbsnp144.grch38/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.20" %}
 {% set name = "SNPlocs.Hsapiens.dbSNP144.GRCh38" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,31 +13,32 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 128c95e327adf72ae137fb5ae58270fc
 build:
-  number: 15
+  number: 16
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-snplocs.hsapiens.dbsnp144.grch38", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg38
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-snplocs.hsapiens.dbsnp149.grch38/meta.yaml b/recipes/bioconductor-snplocs.hsapiens.dbsnp149.grch38/meta.yaml
index d70675ec90785..f6a6fc11e513c 100644
--- a/recipes/bioconductor-snplocs.hsapiens.dbsnp149.grch38/meta.yaml
+++ b/recipes/bioconductor-snplocs.hsapiens.dbsnp149.grch38/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.20" %}
 {% set name = "SNPlocs.Hsapiens.dbSNP149.GRCh38" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,31 +13,32 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 8cf749a8649a53449066b54160a3745c
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-snplocs.hsapiens.dbsnp149.grch38", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg38
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-snplocs.hsapiens.dbsnp150.grch38/meta.yaml b/recipes/bioconductor-snplocs.hsapiens.dbsnp150.grch38/meta.yaml
index 6d37b8ed2a26f..f066bc2eeae6b 100644
--- a/recipes/bioconductor-snplocs.hsapiens.dbsnp150.grch38/meta.yaml
+++ b/recipes/bioconductor-snplocs.hsapiens.dbsnp150.grch38/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.20" %}
 {% set name = "SNPlocs.Hsapiens.dbSNP150.GRCh38" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,31 +13,32 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 575a7aaa9125d52ca0634b3ac586c9a7
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-snplocs.hsapiens.dbsnp150.grch38", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg38
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-snplocs.hsapiens.dbsnp155.grch37/meta.yaml b/recipes/bioconductor-snplocs.hsapiens.dbsnp155.grch37/meta.yaml
index b62ab1e5462cc..64217e319f370 100644
--- a/recipes/bioconductor-snplocs.hsapiens.dbsnp155.grch37/meta.yaml
+++ b/recipes/bioconductor-snplocs.hsapiens.dbsnp155.grch37/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.24" %}
 {% set name = "SNPlocs.Hsapiens.dbSNP155.GRCh37" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -17,27 +17,28 @@ build:
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-snplocs.hsapiens.dbsnp155.grch37", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg19
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-snplocs.hsapiens.dbsnp155.grch38/meta.yaml b/recipes/bioconductor-snplocs.hsapiens.dbsnp155.grch38/meta.yaml
index 7c427bc75106a..cfda415a59962 100644
--- a/recipes/bioconductor-snplocs.hsapiens.dbsnp155.grch38/meta.yaml
+++ b/recipes/bioconductor-snplocs.hsapiens.dbsnp155.grch38/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.24" %}
 {% set name = "SNPlocs.Hsapiens.dbSNP155.GRCh38" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -17,27 +17,28 @@ build:
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-snplocs.hsapiens.dbsnp155.grch38", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg38
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-snprelate/meta.yaml b/recipes/bioconductor-snprelate/meta.yaml
index fb0f78bb75ad3..2fac4055b5d28 100644
--- a/recipes/bioconductor-snprelate/meta.yaml
+++ b/recipes/bioconductor-snprelate/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.1" %}
+{% set version = "1.36.0" %}
 {% set name = "SNPRelate" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c8392e87cb9c26212c12cebd76de12cf
+  md5: f4e5095c6b99014e02d770e7f4bd5617
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-snprelate", max_pin="x.x") }}'
 # Suggests: parallel, Matrix, RUnit, knitr, markdown, rmarkdown, MASS, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
     - r-base
   build:
     - {{ compiler('c') }}
@@ -36,11 +37,15 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-3
+  license: GPL-3-only
   summary: 'Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data'
   description: 'Genome-wide association studies (GWAS) are widely used to investigate the genetic basis of diseases and traits, but they pose many computational challenges. We developed an R package SNPRelate to provide a binary format for single-nucleotide polymorphism (SNP) data in GWAS utilizing CoreArray Genomic Data Structure (GDS) data files. The GDS format offers the efficient operations specifically designed for integers with two bits, since a SNP could occupy only two bits. SNPRelate is also designed to accelerate two key computations on SNP data using parallel computing for multi-core symmetric multiprocessing computer architectures: Principal Component Analysis (PCA) and relatedness analysis using Identity-By-Descent measures. The SNP GDS format is also used by the GWASTools package with the support of S4 classes and generic functions. The extended GDS format is implemented in the SeqArray package to support the storage of single nucleotide variations (SNVs), insertion/deletion polymorphism (indel) and structural variation calls in whole-genome and whole-exome variant data.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
   parent_recipe:
     name: bioconductor-snprelate
     path: recipes/bioconductor-snprelate
diff --git a/recipes/bioconductor-snpstats/meta.yaml b/recipes/bioconductor-snpstats/meta.yaml
index c5ed6fbea506f..8843ee6bc567e 100644
--- a/recipes/bioconductor-snpstats/meta.yaml
+++ b/recipes/bioconductor-snpstats/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.50.0" %}
+{% set version = "1.52.0" %}
 {% set name = "snpStats" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fba193a357b1be45597d537425b2c62f
+  md5: 0625c920470937a31fd278cf8bd8982a
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-snpstats", max_pin="x.x") }}'
 # Suggests: hexbin
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-matrix
     - r-survival
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-matrix
     - r-survival
@@ -41,11 +42,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: GPL-3
+  license: 'GPL-3-only'
   summary: 'SnpMatrix and XSnpMatrix classes and methods'
   description: 'Classes and statistical methods for large SNP association studies. This extends the earlier snpMatrix package, allowing for uncertainty in genotypes.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:snpstats
     - doi:10.1038/nmeth.3252
diff --git a/recipes/bioconductor-soggi/meta.yaml b/recipes/bioconductor-soggi/meta.yaml
index fddf936914ea7..b4b76b787681f 100644
--- a/recipes/bioconductor-soggi/meta.yaml
+++ b/recipes/bioconductor-soggi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "soGGi" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,46 +11,47 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c3e73483964e8c438966ac51a33187c0
+  md5: 6b8a823ad7812fdda198d38b28c00f6f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-soggi", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle, knitr
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-chipseq >=1.50.0,<1.51.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-chipseq >=1.52.0,<1.53.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-reshape2
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-chipseq >=1.50.0,<1.51.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-chipseq >=1.52.0,<1.53.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-reshape2
diff --git a/recipes/bioconductor-somascan.db/meta.yaml b/recipes/bioconductor-somascan.db/meta.yaml
new file mode 100644
index 0000000000000..06a3f52706efd
--- /dev/null
+++ b/recipes/bioconductor-somascan.db/meta.yaml
@@ -0,0 +1,45 @@
+{% set version = "0.99.7" %}
+{% set name = "SomaScan.db" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: aa52f4f12dfb2f0aa4c7fe3633de4646
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-somascan.db", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: annotate, BiocStyle, dplyr, GO.db, hgu95av2.db, KEGGREST, knitr, rmarkdown, SomaDataIO, testthat (>= 3.0.0), withr
+requirements:
+  host:
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - r-base
+    - r-dbi
+  run:
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - r-base
+    - r-dbi
+    - curl
+    - 'bioconductor-data-packages >=20231203'
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/data/annotation/html/{{ name }}.html'
+  license: 'MIT + file LICENSE'
+  summary: 'Somalogic SomaScan Annotation Data'
+  description: 'An R package providing extended biological annotations for the SomaScan Assay, a proteomics platform developed by SomaLogic Operating Co., Inc. The annotations in this package were assembled using data from public repositories. For more information about the SomaScan assay and its data, please reference the ''SomaLogic/SomaLogic-Data'' GitHub repository.'
+  license_file: LICENSE
+
diff --git a/recipes/bioconductor-somascan.db/post-link.sh b/recipes/bioconductor-somascan.db/post-link.sh
new file mode 100644
index 0000000000000..5a86e22124d74
--- /dev/null
+++ b/recipes/bioconductor-somascan.db/post-link.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+installBiocDataPackage.sh "somascan.db-0.99.7"
diff --git a/recipes/bioconductor-somascan.db/pre-unlink.sh b/recipes/bioconductor-somascan.db/pre-unlink.sh
new file mode 100644
index 0000000000000..2bd6437f78149
--- /dev/null
+++ b/recipes/bioconductor-somascan.db/pre-unlink.sh
@@ -0,0 +1 @@
+R CMD REMOVE --library=$PREFIX/lib/R/library/ SomaScan.db
diff --git a/recipes/bioconductor-somaticadata/meta.yaml b/recipes/bioconductor-somaticadata/meta.yaml
index 6f7e9ab2135e6..00bdf05078a09 100644
--- a/recipes/bioconductor-somaticadata/meta.yaml
+++ b/recipes/bioconductor-somaticadata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "SomatiCAData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1ec746e24a46ea58a782f2d7e18b9c29
+  md5: 31d9100d6b5fa5f95c59eda9995f2684
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-somaticadata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-somaticadata/post-link.sh b/recipes/bioconductor-somaticadata/post-link.sh
index e0381f4000f6d..ae240efdbcd9e 100644
--- a/recipes/bioconductor-somaticadata/post-link.sh
+++ b/recipes/bioconductor-somaticadata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "somaticadata-1.38.0"
+installBiocDataPackage.sh "somaticadata-1.40.0"
diff --git a/recipes/bioconductor-somaticcanceralterations/meta.yaml b/recipes/bioconductor-somaticcanceralterations/meta.yaml
index 6dfdcd891ec29..45d47329efb01 100644
--- a/recipes/bioconductor-somaticcanceralterations/meta.yaml
+++ b/recipes/bioconductor-somaticcanceralterations/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "SomaticCancerAlterations" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 09b8e014009801826dde224175c1f774
+  md5: 77b2b0312705c2a9581cdf7aab591db8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-somaticcanceralterations", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, ggbio, ggplot2, knitr
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-somaticcanceralterations/post-link.sh b/recipes/bioconductor-somaticcanceralterations/post-link.sh
index 6fe8d5d9a642b..d63db0e4c80a7 100644
--- a/recipes/bioconductor-somaticcanceralterations/post-link.sh
+++ b/recipes/bioconductor-somaticcanceralterations/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "somaticcanceralterations-1.36.0"
+installBiocDataPackage.sh "somaticcanceralterations-1.38.0"
diff --git a/recipes/bioconductor-somaticsignatures/meta.yaml b/recipes/bioconductor-somaticsignatures/meta.yaml
index c455794f053be..9db50d019bf36 100644
--- a/recipes/bioconductor-somaticsignatures/meta.yaml
+++ b/recipes/bioconductor-somaticsignatures/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.36.0" %}
+{% set version = "2.38.0" %}
 {% set name = "SomaticSignatures" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,40 +11,41 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c70a8ab04a25f675f456adae05f672a3
+  md5: 46d14334be0098323bc956bade5d5e9e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-somaticsignatures", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, parallel, BSgenome.Hsapiens.1000genomes.hs37d5, SomaticCancerAlterations, ggdendro, fastICA, sva
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-ggplot2
     - r-nmf
     - r-proxy
     - r-reshape2
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-ggbio >=1.48.0,<1.49.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-pcamethods >=1.92.0,<1.93.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-ggbio >=1.50.0,<1.51.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-pcamethods >=1.94.0,<1.95.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-ggplot2
     - r-nmf
diff --git a/recipes/bioconductor-somnibus/meta.yaml b/recipes/bioconductor-somnibus/meta.yaml
index 391796666a2c9..3d26442edc700 100644
--- a/recipes/bioconductor-somnibus/meta.yaml
+++ b/recipes/bioconductor-somnibus/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.7.0" %}
+{% set version = "1.10.0" %}
 {% set name = "SOMNiBUS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,52 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3686657266b274a93233dd24d23f1294
+  md5: 0865c015122f915127302bf751a10812
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-somnibus", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BiocStyle, covr, devtools, dplyr, knitr, magick, rmarkdown, testthat
+# Suggests: BiocStyle, covr, devtools, dplyr, knitr, magick, rmarkdown, testthat, TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db,
 requirements:
   host:
+    - 'bioconductor-annotatr >=1.28.0,<1.29.0'
+    - 'bioconductor-bsseq >=1.38.0,<1.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
+    - r-biocmanager
+    - r-data.table
+    - r-ggplot2
     - r-matrix
     - r-mgcv
+    - r-reshape2
+    - r-tidyr
     - r-vgam
+    - r-yaml
   run:
+    - 'bioconductor-annotatr >=1.28.0,<1.29.0'
+    - 'bioconductor-bsseq >=1.38.0,<1.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
+    - r-biocmanager
+    - r-data.table
+    - r-ggplot2
     - r-matrix
     - r-mgcv
+    - r-reshape2
+    - r-tidyr
     - r-vgam
+    - r-yaml
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-soybeancdf/meta.yaml b/recipes/bioconductor-soybeancdf/meta.yaml
index ebd6fea315882..fa809e0be223a 100644
--- a/recipes/bioconductor-soybeancdf/meta.yaml
+++ b/recipes/bioconductor-soybeancdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "soybeancdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: a18e0ba5dbcf2291bdec91091dc528e6
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-soybeancdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-soybeanprobe/meta.yaml b/recipes/bioconductor-soybeanprobe/meta.yaml
index 21b5bdee97dbd..37c26efb68ab5 100644
--- a/recipes/bioconductor-soybeanprobe/meta.yaml
+++ b/recipes/bioconductor-soybeanprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "soybeanprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 3057a5c387ff35b6c647c4db27041a13
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-soybeanprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-spacepac/meta.yaml b/recipes/bioconductor-spacepac/meta.yaml
index da89c68eb3064..af052e29be413 100644
--- a/recipes/bioconductor-spacepac/meta.yaml
+++ b/recipes/bioconductor-spacepac/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "SpacePAC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0ff52a3613f9c0d46581f626a41a29f9
+  md5: aa35450e9ef0b3cd7ca3d90262d36ddf
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spacepac", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, rgl
 requirements:
   host:
-    - 'bioconductor-ipac >=1.44.0,<1.45.0'
+    - 'bioconductor-ipac >=1.46.0,<1.47.0'
     - r-base
   run:
-    - 'bioconductor-ipac >=1.44.0,<1.45.0'
+    - 'bioconductor-ipac >=1.46.0,<1.47.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-spaniel/meta.yaml b/recipes/bioconductor-spaniel/meta.yaml
index cb7b2d8a46f9d..5dbb8445371d2 100644
--- a/recipes/bioconductor-spaniel/meta.yaml
+++ b/recipes/bioconductor-spaniel/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "Spaniel" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2a456611860cdb19712e117ca3bb5811
+  md5: fb29666756a1db567f16b5c72420de4c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spaniel", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, devtools
 requirements:
   host:
-    - 'bioconductor-dropletutils >=1.20.0,<1.21.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-dropletutils >=1.22.0,<1.23.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -38,12 +39,12 @@ requirements:
     - r-seurat
     - r-shiny
   run:
-    - 'bioconductor-dropletutils >=1.20.0,<1.21.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-dropletutils >=1.22.0,<1.23.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-sparrow/meta.yaml b/recipes/bioconductor-sparrow/meta.yaml
index cb8a9b9527ac9..5d45dc6ab1c96 100644
--- a/recipes/bioconductor-sparrow/meta.yaml
+++ b/recipes/bioconductor-sparrow/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "sparrow" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d48cb1cab6f2032d3e8101f5ff9b527a
+  md5: 072ccf02fa2cc42410000f238dce492b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sparrow", max_pin="x.x") }}'
   noarch: generic
 # Suggests: AnnotationDbi, BiasedUrn, Biobase (>= 2.24.0), BiocStyle, DESeq2, dplyr, dtplyr, fgsea, GSVA, GO.db, goseq, hexbin, magrittr, matrixStats, msigdbr (>= 7.4.1), KernSmooth, knitr, PANTHER.db (>= 1.0.3), R.utils, reactome.db, rmarkdown, SummarizedExperiment, statmod, stringr, testthat, webshot
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocset >=1.14.0,<1.15.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocset >=1.16.0,<1.17.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - 'r-babelgene >=21.4'
     - r-base
     - r-checkmate
@@ -40,14 +41,14 @@ requirements:
     - 'r-plotly >=4.9.0'
     - r-viridis
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocset >=1.14.0,<1.15.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocset >=1.16.0,<1.17.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - 'r-babelgene >=21.4'
     - r-base
     - r-checkmate
diff --git a/recipes/bioconductor-sparsearray/meta.yaml b/recipes/bioconductor-sparsearray/meta.yaml
index f5acf6cd63e10..1ce3dc389f1af 100644
--- a/recipes/bioconductor-sparsearray/meta.yaml
+++ b/recipes/bioconductor-sparsearray/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.10" %}
+{% set version = "1.2.2" %}
 {% set name = "SparseArray" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0e5ecc9eaa58af506cbf7340f9c890f1
+  md5: a73b2e316ce8135de81af01a9a9610ec
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sparsearray", max_pin="x.x") }}'
 # Suggests: DelayedArray, testthat, knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-s4arrays >=1.0.0,<1.1.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4arrays >=1.2.0,<1.3.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-matrix
     - r-matrixstats
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-s4arrays >=1.0.0,<1.1.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4arrays >=1.2.0,<1.3.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-matrix
     - r-matrixstats
@@ -53,3 +54,6 @@ about:
   summary: 'Efficient in-memory representation of multidimensional sparse arrays'
   description: 'The SparseArray package is an infrastructure package that provides an array-like container for efficient in-memory representation of multidimensional sparse data in R. The package defines the SparseArray virtual class and two concrete subclasses: COO_SparseArray and SVT_SparseArray. Each subclass uses its own internal representation of the nonzero multidimensional data, the "COO layout" and the "SVT layout", respectively. SVT_SparseArray objects mimic as much as possible the behavior of ordinary matrix and array objects in base R. In particular, they suppport most of the "standard matrix and array API" defined in base R and in the matrixStats package from CRAN.'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/bioconductor-sparsematrixstats/meta.yaml b/recipes/bioconductor-sparsematrixstats/meta.yaml
index 2f11958509062..b32bbcc2f9c2f 100644
--- a/recipes/bioconductor-sparsematrixstats/meta.yaml
+++ b/recipes/bioconductor-sparsematrixstats/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.2" %}
+{% set version = "1.14.0" %}
 {% set name = "sparseMatrixStats" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7669451759bb18ece433548b067ac73e
+  md5: 4319e6fb04b91467bd08cc4ce2ad609c
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sparsematrixstats", max_pin="x.x") }}'
 # Suggests: testthat (>= 2.1.0), knitr, bench, rmarkdown, BiocStyle
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
     - r-base
     - r-matrix
     - 'r-matrixstats >=0.60.0'
@@ -29,7 +30,7 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
     - r-base
     - r-matrix
     - 'r-matrixstats >=0.60.0'
@@ -47,4 +48,9 @@ about:
   summary: 'Summary Statistics for Rows and Columns of Sparse Matrices'
   description: 'High performance functions for row and column operations on sparse matrices. For example: col / rowMeans2, col / rowMedians, col / rowVars etc. Currently, the optimizations are limited to data in the column sparse format. This package is inspired by the matrixStats package by Henrik Bengtsson.'
   license_file: LICENSE
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name }}
 
diff --git a/recipes/bioconductor-sparsenetgls/meta.yaml b/recipes/bioconductor-sparsenetgls/meta.yaml
index 3492a6b81e9fd..9568b17a7c9b5 100644
--- a/recipes/bioconductor-sparsenetgls/meta.yaml
+++ b/recipes/bioconductor-sparsenetgls/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "sparsenetgls" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: e3b4604f61dbbc07c2acdad62b980e2f
+  md5: 32b8f3b9fe86b40386aee23ac4ea55fd
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sparsenetgls", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, lme4, BiocStyle, knitr, rmarkdown, roxygen2 (>= 5.0.0)
 # SystemRequirements: GNU make
diff --git a/recipes/bioconductor-sparsesignatures/meta.yaml b/recipes/bioconductor-sparsesignatures/meta.yaml
index 313e0c984a18a..5f81cb9307a38 100644
--- a/recipes/bioconductor-sparsesignatures/meta.yaml
+++ b/recipes/bioconductor-sparsesignatures/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.10.0" %}
+{% set version = "2.12.0" %}
 {% set name = "SparseSignatures" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: eaa4a346f4ce804bdd6e4f684a8889f5
+  md5: 832b206679a06252fa3b76f2700a70e9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sparsesignatures", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, BSgenome.Hsapiens.1000genomes.hs37d5, BiocStyle, testthat, knitr,
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-data.table
     - r-ggplot2
@@ -35,11 +36,11 @@ requirements:
     - r-nnls
     - r-reshape2
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-data.table
     - r-ggplot2
diff --git a/recipes/bioconductor-spasim/meta.yaml b/recipes/bioconductor-spasim/meta.yaml
index c899699a568f0..4189527c513c5 100644
--- a/recipes/bioconductor-spasim/meta.yaml
+++ b/recipes/bioconductor-spasim/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.1" %}
+{% set version = "1.4.0" %}
 {% set name = "spaSim" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a6294d1b8bfe4bacae22708e5043fa8f
+  md5: d69e70975aaaa9bffc5e52f95885e59c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spasim", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RefManageR, BiocStyle, knitr, testthat (>= 3.0.0), sessioninfo, rmarkdown, markdown
 requirements:
   host:
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -30,8 +31,8 @@ requirements:
     - r-spatstat.geom
     - r-spatstat.random
   run:
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-spatialcpie/meta.yaml b/recipes/bioconductor-spatialcpie/meta.yaml
index ccddfc1fa8f6c..2a26cea000a99 100644
--- a/recipes/bioconductor-spatialcpie/meta.yaml
+++ b/recipes/bioconductor-spatialcpie/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "SpatialCPie" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f5b9f134b000016e4ac3171cb99f9bfc
+  md5: f7f622f0a9e08b387870bddc9a52cfc2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spatialcpie", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle (>= 2.8.2), jpeg (>= 0.1-8), knitr (>= 1.20), rmarkdown (>= 1.10), testthat (>= 2.0.0)
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-colorspace >=1.3-2'
     - 'r-data.table >=1.12.2'
@@ -45,7 +46,7 @@ requirements:
     - 'r-tidyselect >=0.2.4'
     - 'r-zeallot >=0.1.0'
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-colorspace >=1.3-2'
     - 'r-data.table >=1.12.2'
diff --git a/recipes/bioconductor-spatialdatasets/meta.yaml b/recipes/bioconductor-spatialdatasets/meta.yaml
new file mode 100644
index 0000000000000..59eeabf7949e9
--- /dev/null
+++ b/recipes/bioconductor-spatialdatasets/meta.yaml
@@ -0,0 +1,43 @@
+{% set version = "1.0.0" %}
+{% set name = "SpatialDatasets" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 36fd913ef0d7109d0be40afbc1255548
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spatialdatasets", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, knitr, rmarkdown
+requirements:
+  host:
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - r-base
+  run:
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - r-base
+    - curl
+    - 'bioconductor-data-packages >=20231203'
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'Collection of spatial omics datasets'
+  description: 'This is a collection of publically available spatial omics datasets. Where possible we have curated these datasets as either SpatialExperiments, MoleculeExperiments or CytoImageLists and included annotations of the sample characteristics.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-spatialdatasets/post-link.sh b/recipes/bioconductor-spatialdatasets/post-link.sh
new file mode 100644
index 0000000000000..072e49b3171c7
--- /dev/null
+++ b/recipes/bioconductor-spatialdatasets/post-link.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+installBiocDataPackage.sh "spatialdatasets-1.0.0"
diff --git a/recipes/bioconductor-spatialdatasets/pre-unlink.sh b/recipes/bioconductor-spatialdatasets/pre-unlink.sh
new file mode 100644
index 0000000000000..b5bdda7982391
--- /dev/null
+++ b/recipes/bioconductor-spatialdatasets/pre-unlink.sh
@@ -0,0 +1 @@
+R CMD REMOVE --library=$PREFIX/lib/R/library/ SpatialDatasets
diff --git a/recipes/bioconductor-spatialde/meta.yaml b/recipes/bioconductor-spatialde/meta.yaml
index 9229b7cb57066..113377b6f586e 100644
--- a/recipes/bioconductor-spatialde/meta.yaml
+++ b/recipes/bioconductor-spatialde/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "spatialDE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 62f672c7a70d4a0d0b4895b103e73379
+  md5: 4227d5d446ef2399e1b325cfa7ef65b7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spatialde", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, rmarkdown, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-checkmate
     - r-ggplot2
@@ -33,9 +34,9 @@ requirements:
     - r-reticulate
     - r-scales
   run:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-checkmate
     - r-ggplot2
diff --git a/recipes/bioconductor-spatialdecon/meta.yaml b/recipes/bioconductor-spatialdecon/meta.yaml
index c6f443962be21..dd83c38cceac5 100644
--- a/recipes/bioconductor-spatialdecon/meta.yaml
+++ b/recipes/bioconductor-spatialdecon/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "SpatialDecon" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c6fb182168a8f4c35626e71f3f9ad301
+  md5: a3dd72587ea55dc018231523782d225f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spatialdecon", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, qpdf
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-geomxtools >=3.4.0,<3.5.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-geomxtools >=3.5.0,<3.6.0'
     - r-base
     - 'r-lognormreg >=0.4'
     - r-matrix
     - r-repmis
     - r-seuratobject
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-geomxtools >=3.4.0,<3.5.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-geomxtools >=3.5.0,<3.6.0'
     - r-base
     - 'r-lognormreg >=0.4'
     - r-matrix
diff --git a/recipes/bioconductor-spatialdmelxsim/meta.yaml b/recipes/bioconductor-spatialdmelxsim/meta.yaml
index 9141957e86303..2e4dbaa680488 100644
--- a/recipes/bioconductor-spatialdmelxsim/meta.yaml
+++ b/recipes/bioconductor-spatialdmelxsim/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.1" %}
+{% set version = "1.8.0" %}
 {% set name = "spatialDmelxsim" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8f999976552a56f39d49fd9ee186b017
+  md5: 2fec38c7672022e76f2b7a7ba7b9a677
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spatialdmelxsim", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230713
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-spatialdmelxsim/post-link.sh b/recipes/bioconductor-spatialdmelxsim/post-link.sh
index 73a1e9d948c9a..b6c6cfed4f1e5 100644
--- a/recipes/bioconductor-spatialdmelxsim/post-link.sh
+++ b/recipes/bioconductor-spatialdmelxsim/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "spatialdmelxsim-1.6.1"
+installBiocDataPackage.sh "spatialdmelxsim-1.8.0"
diff --git a/recipes/bioconductor-spatialexperiment/meta.yaml b/recipes/bioconductor-spatialexperiment/meta.yaml
index 470bebc56e1f2..61e7e4da5902d 100644
--- a/recipes/bioconductor-spatialexperiment/meta.yaml
+++ b/recipes/bioconductor-spatialexperiment/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "SpatialExperiment" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,32 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9541a84eef622297d0a26bc0de26da03
+  md5: 7dbd7938c005104df763ecf3d016154f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spatialexperiment", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr, rmarkdown, testthat, BiocStyle, BumpyMatrix
+# Suggests: knitr, rmarkdown, testthat, BiocStyle, BumpyMatrix, DropletUtils
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-dropletutils >=1.20.0,<1.21.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-magick
     - r-rjson
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-dropletutils >=1.20.0,<1.21.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-magick
     - r-rjson
diff --git a/recipes/bioconductor-spatialfeatureexperiment/meta.yaml b/recipes/bioconductor-spatialfeatureexperiment/meta.yaml
index 7ae7a555748f0..72a314a96d05f 100644
--- a/recipes/bioconductor-spatialfeatureexperiment/meta.yaml
+++ b/recipes/bioconductor-spatialfeatureexperiment/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.1" %}
+{% set version = "1.4.0" %}
 {% set name = "SpatialFeatureExperiment" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e6b58208d533b7d157f3f736da0c77bd
+  md5: 56d4ad5144861bea16c2f677e096ac75
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spatialfeatureexperiment", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, dplyr, DropletUtils, knitr, rhdf5, rmarkdown, sfarrow, SFEData, vroom, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - r-rjson
@@ -36,13 +37,13 @@ requirements:
     - 'r-spdep >=1.1-7'
     - r-terra
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - r-rjson
diff --git a/recipes/bioconductor-spatialheatmap/meta.yaml b/recipes/bioconductor-spatialheatmap/meta.yaml
index cb8a49efac777..d4edc6ad928bf 100644
--- a/recipes/bioconductor-spatialheatmap/meta.yaml
+++ b/recipes/bioconductor-spatialheatmap/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.6.0" %}
+{% set version = "2.8.0" %}
 {% set name = "spatialHeatmap" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,83 +11,68 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 99f9415e7f96f98c824aac703586776b
+  md5: 2fe3c68f9bbfb419d0afd3d329e65747
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spatialheatmap", max_pin="x.x") }}'
   noarch: generic
-# Suggests: AnnotationDbi, av, BiocParallel, BiocFileCache, BiocGenerics, BiocStyle, BiocSingular, Biobase, cachem, DESeq2, distinct, dendextend, DT, HDF5Array, htmltools, kableExtra, knitr, limma, magick, memoise, ExpressionAtlas, GEOquery, org.Hs.eg.db, org.Mm.eg.db, org.At.tair.db, org.Dr.eg.db, org.Dm.eg.db, pROC, rmarkdown, rols, rappdirs, RUnit, Rtsne, shinyWidgets, shinyjs, shinyBS, sortable, Seurat, uwot
+# Suggests: AnnotationDbi, av, BiocParallel, BiocFileCache, BiocGenerics, BiocStyle, BiocSingular, Biobase, cachem, DESeq2, distinct, dendextend, DT, dynamicTreeCut, flashClust, ggdendro, HDF5Array, htmltools, htmlwidgets, kableExtra, knitr, limma, magick, memoise, ExpressionAtlas, GEOquery, org.Hs.eg.db, org.Mm.eg.db, org.At.tair.db, org.Dr.eg.db, org.Dm.eg.db, pROC, plotly, rmarkdown, rols, rappdirs, RUnit, Rtsne, shinyWidgets, shinyjs, shinyBS, sortable, Seurat, sparkline, spsUtil, uwot, UpSetR, visNetwork, WGCNA, yaml
 requirements:
   host:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-dplyr
-    - r-dynamictreecut
-    - r-flashclust
-    - r-ggdendro
     - r-ggplot2
     - r-ggplotify
     - r-gplots
     - r-gridextra
     - r-grimport
-    - r-htmlwidgets
     - r-igraph
     - r-matrix
-    - r-plotly
     - r-reshape2
     - r-rsvg
     - r-shiny
     - r-shinydashboard
+    - 'r-spscomps >=0.3.3.0'
     - r-tibble
-    - r-upsetr
-    - r-visnetwork
-    - r-wgcna
     - r-xml2
-    - r-yaml
   run:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scran >=1.28.0,<1.29.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scran >=1.30.0,<1.31.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-dplyr
-    - r-dynamictreecut
-    - r-flashclust
-    - r-ggdendro
     - r-ggplot2
     - r-ggplotify
     - r-gplots
     - r-gridextra
     - r-grimport
-    - r-htmlwidgets
     - r-igraph
     - r-matrix
-    - r-plotly
     - r-reshape2
     - r-rsvg
     - r-shiny
     - r-shinydashboard
+    - 'r-spscomps >=0.3.3.0'
     - r-tibble
-    - r-upsetr
-    - r-visnetwork
-    - r-wgcna
     - r-xml2
-    - r-yaml
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
@@ -95,5 +80,5 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: Artistic-2.0
   summary: spatialHeatmap
-  description: 'The spatialHeatmap package provides functionalities for visualizing cell-, tissue- and organ-specific data of biological assays by coloring the corresponding spatial features defined in anatomical images according to a numeric color key.'
+  description: 'The spatialHeatmap package offers the primary functionality for visualizing cell-, tissue- and organ-specific assay data in spatial anatomical images. Additionally, it provides extended functionalities for large-scale data mining routines and co-visualizing bulk and single-cell data.'
 
diff --git a/recipes/bioconductor-spatiallibd/meta.yaml b/recipes/bioconductor-spatiallibd/meta.yaml
index 30f9d535b5b41..9c66105422f97 100644
--- a/recipes/bioconductor-spatiallibd/meta.yaml
+++ b/recipes/bioconductor-spatiallibd/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.1" %}
 {% set name = "spatialLIBD" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1c14166eb3d988b152448d770f491507
+  md5: cd8c85a03e555f2dfdeb1627f7087002
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spatiallibd", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr, RefManageR, rmarkdown, BiocStyle, testthat (>= 2.1.0), covr, here, BiocManager, lobstr
+# Suggests: knitr, RefManageR, rmarkdown, BiocStyle, testthat (>= 2.1.0), covr, here, BiocManager, lobstr, DropletUtils
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-benchmarkme
     - r-cowplot
@@ -57,21 +58,21 @@ requirements:
     - r-tibble
     - r-viridislite
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-benchmarkme
     - r-cowplot
@@ -93,7 +94,7 @@ requirements:
     - r-tibble
     - r-viridislite
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-spatiallibd/post-link.sh b/recipes/bioconductor-spatiallibd/post-link.sh
index ef2ee65ad274e..9ef1f36f1b430 100644
--- a/recipes/bioconductor-spatiallibd/post-link.sh
+++ b/recipes/bioconductor-spatiallibd/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "spatiallibd-1.12.0"
+installBiocDataPackage.sh "spatiallibd-1.14.1"
diff --git a/recipes/bioconductor-spatialomicsoverlay/meta.yaml b/recipes/bioconductor-spatialomicsoverlay/meta.yaml
index a65ec0d5984ba..8d46d91ef4271 100644
--- a/recipes/bioconductor-spatialomicsoverlay/meta.yaml
+++ b/recipes/bioconductor-spatialomicsoverlay/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.1" %}
 {% set name = "SpatialOmicsOverlay" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 596d07d8c2f6f59deafd7d6d3f24162e
+  md5: 149a968f19aa22b57caca243b3480378
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spatialomicsoverlay", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr, rmarkdown, testthat (>= 3.0.0), stringi, qpdf, pheatmap, viridis, cowplot, vdiffr
+# Suggests: knitr, rmarkdown, testthat (>= 3.0.0), stringi, qpdf, pheatmap, viridis, cowplot, vdiffr, sf
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-geomxtools >=3.4.0,<3.5.0'
-    - 'bioconductor-rbioformats >=1.0.0,<1.1.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-geomxtools >=3.5.0,<3.6.0'
+    - 'bioconductor-rbioformats >=1.2.0,<1.3.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-base64enc
     - r-data.table
@@ -41,12 +42,12 @@ requirements:
     - r-stringr
     - r-xml
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-geomxtools >=3.4.0,<3.5.0'
-    - 'bioconductor-rbioformats >=1.0.0,<1.1.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-geomxtools >=3.5.0,<3.6.0'
+    - 'bioconductor-rbioformats >=1.2.0,<1.3.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-base64enc
     - r-data.table
diff --git a/recipes/bioconductor-spatzie/meta.yaml b/recipes/bioconductor-spatzie/meta.yaml
index 30b812f536f85..98199da5b24e6 100644
--- a/recipes/bioconductor-spatzie/meta.yaml
+++ b/recipes/bioconductor-spatzie/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "spatzie" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,44 +11,45 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 001f0345a1039c53f6f585f2950ef7f7
+  md5: fa887a71329c75cde9ab0b1aaeb0d481
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spatzie", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocManager, Biostrings, knitr, pheatmap, rmarkdown, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Mmusculus.UCSC.mm10.knownGene, TxDb.Mmusculus.UCSC.mm9.knownGene
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicinteractions >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-motifmatchr >=1.22.0,<1.23.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tfbstools >=1.38.0,<1.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicinteractions >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-motifmatchr >=1.24.0,<1.25.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tfbstools >=1.40.0,<1.41.0'
     - r-base
     - r-ggplot2
     - r-matrixstats
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicinteractions >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-motifmatchr >=1.22.0,<1.23.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tfbstools >=1.38.0,<1.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicinteractions >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-motifmatchr >=1.24.0,<1.25.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tfbstools >=1.40.0,<1.41.0'
     - r-base
     - r-ggplot2
     - r-matrixstats
diff --git a/recipes/bioconductor-speckle/meta.yaml b/recipes/bioconductor-speckle/meta.yaml
index 5f7896bf030f5..76d5d70a76e25 100644
--- a/recipes/bioconductor-speckle/meta.yaml
+++ b/recipes/bioconductor-speckle/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "speckle" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f95c51e61cd908d7bdc1c09c0f818eea
+  md5: 4603cad300c83d6e6374e5989b5fe32a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-speckle", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, statmod, CellBench, scater, patchwork, jsonlite, vdiffr, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - r-ggplot2
     - r-seurat
   run:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - r-ggplot2
     - r-seurat
diff --git a/recipes/bioconductor-specl/meta.yaml b/recipes/bioconductor-specl/meta.yaml
index 64f32842e8a77..df05401abb956 100644
--- a/recipes/bioconductor-specl/meta.yaml
+++ b/recipes/bioconductor-specl/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "specL" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 94afc529140346a23f2b1b46026b482b
+  md5: a3a436585f26f8353106b030a26cbf98
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-specl", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, BiocStyle (>= 2.2), knitr (>= 1.15), rmarkdown, RUnit (>= 0.4)
 requirements:
diff --git a/recipes/bioconductor-specond/meta.yaml b/recipes/bioconductor-specond/meta.yaml
index 59647e5a09f72..dce56f3e7bbba 100644
--- a/recipes/bioconductor-specond/meta.yaml
+++ b/recipes/bioconductor-specond/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.54.0" %}
+{% set version = "1.56.0" %}
 {% set name = "SpeCond" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7b33052af7d4b397953ca36153d07a8d
+  md5: f189b2d0a72f0fb1b7a99bd0b2bb73ab
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-specond", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-fields
     - 'r-hwriter >=1.1'
     - 'r-mclust >=3.3.1'
     - r-rcolorbrewer
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-fields
     - 'r-hwriter >=1.1'
diff --git a/recipes/bioconductor-spectra/meta.yaml b/recipes/bioconductor-spectra/meta.yaml
index 436634bf9685e..dd269b5bb66be 100644
--- a/recipes/bioconductor-spectra/meta.yaml
+++ b/recipes/bioconductor-spectra/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.1" %}
+{% set version = "1.12.0" %}
 {% set name = "Spectra" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 617b4d14b39808599e781280c128fe1e
+  md5: 32589596593389b703c87d7a05479fe3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spectra", max_pin="x.x") }}'
   noarch: generic
-# Suggests: testthat, knitr (>= 1.1.0), msdata (>= 0.19.3), roxygen2, BiocStyle (>= 2.5.19), mzR (>= 2.19.6), rhdf5 (>= 2.32.0), rmarkdown, vdiffr (>= 1.0.0)
+# Suggests: testthat, knitr (>= 1.1.0), msdata (>= 0.19.3), roxygen2, BiocStyle (>= 2.5.19), mzR (>= 2.19.6), rhdf5 (>= 2.32.0), rmarkdown, vdiffr (>= 1.0.0), msentropy, patrick
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-metabocoreutils >=1.10.0,<1.11.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-fs
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-metabocoreutils >=1.10.0,<1.11.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-fs
 test:
diff --git a/recipes/bioconductor-spectraltad/meta.yaml b/recipes/bioconductor-spectraltad/meta.yaml
index 763c5722c6bf4..dc69aaf8e4fd8 100644
--- a/recipes/bioconductor-spectraltad/meta.yaml
+++ b/recipes/bioconductor-spectraltad/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "SpectralTAD" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 39074ac3986665a8f47831b0931adcca
+  md5: 359760e22303de30ab396fcc7d5938af
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spectraltad", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocCheck, BiocManager, BiocStyle, knitr, rmarkdown, microbenchmark, testthat, covr
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hiccompare >=1.22.0,<1.23.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hiccompare >=1.24.0,<1.25.0'
     - r-base
     - r-cluster
     - r-dplyr
@@ -31,9 +32,9 @@ requirements:
     - r-matrix
     - r-primme
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hiccompare >=1.22.0,<1.23.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hiccompare >=1.24.0,<1.25.0'
     - r-base
     - r-cluster
     - r-dplyr
diff --git a/recipes/bioconductor-spem/meta.yaml b/recipes/bioconductor-spem/meta.yaml
index 0e0876ae2f0af..a841243035900 100644
--- a/recipes/bioconductor-spem/meta.yaml
+++ b/recipes/bioconductor-spem/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "SPEM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 785ed40eb3c06926a7e4dc2d327d6d74
+  md5: 2b0ef40bd2428559cf559dfeb2a384f3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spem", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-rsolnp
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-rsolnp
 test:
diff --git a/recipes/bioconductor-spia/meta.yaml b/recipes/bioconductor-spia/meta.yaml
index 3fd1d648db072..dc1d20edf94e0 100644
--- a/recipes/bioconductor-spia/meta.yaml
+++ b/recipes/bioconductor-spia/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.52.0" %}
+{% set version = "2.54.0" %}
 {% set name = "SPIA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 108b8d0a425842f59317eb392085a48c
+  md5: 1a03ed18c41344eb23d6836cb337b9dc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spia", max_pin="x.x") }}'
   noarch: generic
 # Suggests: graph, Rgraphviz, hgu133plus2.db
 requirements:
   host:
-    - 'bioconductor-kegggraph >=1.60.0,<1.61.0'
+    - 'bioconductor-kegggraph >=1.62.0,<1.63.0'
     - r-base
   run:
-    - 'bioconductor-kegggraph >=1.60.0,<1.61.0'
+    - 'bioconductor-kegggraph >=1.62.0,<1.63.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-spiat/meta.yaml b/recipes/bioconductor-spiat/meta.yaml
index a6bb194d78112..584c9b01bc639 100644
--- a/recipes/bioconductor-spiat/meta.yaml
+++ b/recipes/bioconductor-spiat/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.2" %}
+{% set version = "1.4.1" %}
 {% set name = "SPIAT" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9cfee83cf9df8a5f738501c50a9deb30
+  md5: 45342ea9b5cbfbc01e38d6c7b7866852
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spiat", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BiocStyle, plotly (>= 4.9.0), knitr, rmarkdown, pkgdown, testthat, graphics, alphahull, Rtsne, umap, rlang, ComplexHeatmap, elsa
+# Suggests: BiocStyle, plotly (>= 4.9.0), knitr, rmarkdown, pkgdown, testthat, graphics, alphahull, Rtsne, umap, ComplexHeatmap, elsa
 requirements:
   host:
-    - 'bioconductor-dittoseq >=1.12.0,<1.13.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-dittoseq >=1.14.0,<1.15.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'r-apcluster >=1.4.7'
     - r-base
     - 'r-dbscan >=1.1-5'
@@ -36,15 +37,16 @@ requirements:
     - 'r-rann >=2.6.1'
     - r-raster
     - 'r-reshape2 >=1.4.3'
+    - r-rlang
     - r-sp
     - r-spatstat.explore
     - r-spatstat.geom
     - 'r-tibble >=2.1.3'
     - r-vroom
   run:
-    - 'bioconductor-dittoseq >=1.12.0,<1.13.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-dittoseq >=1.14.0,<1.15.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'r-apcluster >=1.4.7'
     - r-base
     - 'r-dbscan >=1.1-5'
@@ -57,6 +59,7 @@ requirements:
     - 'r-rann >=2.6.1'
     - r-raster
     - 'r-reshape2 >=1.4.3'
+    - r-rlang
     - r-sp
     - r-spatstat.explore
     - r-spatstat.geom
@@ -67,7 +70,8 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: Artistic-2.0
+  license: 'Artistic-2.0 + file LICENSE'
   summary: 'Spatial Image Analysis of Tissues'
   description: 'SPIAT (**Sp**atial **I**mage **A**nalysis of **T**issues) is an R package with a suite of data processing, quality control, visualization and data analysis tools. SPIAT is compatible with data generated from single-cell spatial proteomics platforms (e.g. OPAL, CODEX, MIBI, cellprofiler). SPIAT reads spatial data in the form of X and Y coordinates of cells, marker intensities and cell phenotypes. SPIAT includes six analysis modules that allow visualization, calculation of cell colocalization, categorization of the immune microenvironment relative to tumor areas, analysis of cellular neighborhoods, and the quantification of spatial heterogeneity, providing a comprehensive toolkit for spatial data analysis.'
+  license_file: LICENSE
 
diff --git a/recipes/bioconductor-spicyr/meta.yaml b/recipes/bioconductor-spicyr/meta.yaml
index 758db5f04d27a..cac91262c0ec4 100644
--- a/recipes/bioconductor-spicyr/meta.yaml
+++ b/recipes/bioconductor-spicyr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.2" %}
 {% set name = "spicyR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ce45c72613383f9d7f5502ac6856060b
+  md5: 36cba4820e1206ad3a7220e0430b245f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spicyr", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BiocStyle, knitr, rmarkdown, pkgdown
+# Suggests: BiocStyle, knitr, rmarkdown, pkgdown, imcRtools
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-classifyr >=3.6.0,<3.7.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-concaveman
     - r-data.table
     - r-dplyr
     - r-ggforce
     - r-ggplot2
-    - r-lme4
     - r-lmertest
     - r-mgcv
     - r-pheatmap
@@ -42,22 +43,23 @@ requirements:
     - r-scam
     - r-spatstat.explore
     - r-spatstat.geom
+    - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-classifyr >=3.6.0,<3.7.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-concaveman
     - r-data.table
     - r-dplyr
     - r-ggforce
     - r-ggplot2
-    - r-lme4
     - r-lmertest
     - r-mgcv
     - r-pheatmap
@@ -65,6 +67,7 @@ requirements:
     - r-scam
     - r-spatstat.explore
     - r-spatstat.geom
+    - r-tibble
     - r-tidyr
 test:
   commands:
@@ -73,6 +76,6 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: 'GPL (>=2)'
   summary: 'Spatial analysis of in situ cytometry data'
-  description: 'spicyR provides a series of functions to aid in the analysis of both immunofluorescence and mass cytometry imaging data as well as other assays that can deeply phenotype individual cells and their spatial location.'
+  description: 'The spicyR package provides a framework for performing inference on changes in spatial relationships between pairs of cell types for cell-resolution spatial omics technologies. spicyR consists of three primary steps: (i) summarizing the degree of spatial localization between pairs of cell types for each image; (ii) modelling the variability in localization summary statistics as a function of cell counts and (iii) testing for changes in spatial localizations associated with a response variable.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
diff --git a/recipes/bioconductor-spidermir/meta.yaml b/recipes/bioconductor-spidermir/meta.yaml
index bdf9c8b33201c..efa9330b4c45e 100644
--- a/recipes/bioconductor-spidermir/meta.yaml
+++ b/recipes/bioconductor-spidermir/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "SpidermiR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 611d3128b08997448bf2f5b68f7c646e
+  md5: 86d54ea72377eb5f3fc8f92ba3b55374
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spidermir", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, devtools, roxygen2
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-mirnatap >=1.34.0,<1.35.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-mirnatap >=1.36.0,<1.37.0'
     - 'bioconductor-mirnatap.db >=0.99.0,<0.100.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - r-gdata
     - r-httr
     - r-igraph
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-mirnatap >=1.34.0,<1.35.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-mirnatap >=1.36.0,<1.37.0'
     - 'bioconductor-mirnatap.db >=0.99.0,<0.100.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - r-gdata
     - r-httr
diff --git a/recipes/bioconductor-spikein/meta.yaml b/recipes/bioconductor-spikein/meta.yaml
index b44831908e204..f995b553eabe6 100644
--- a/recipes/bioconductor-spikein/meta.yaml
+++ b/recipes/bioconductor-spikein/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "SpikeIn" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e738872c55386dae6334ee399c4674a3
+  md5: 439f9d2eda54024edb7c1c81862d74c8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spikein", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-spikein/post-link.sh b/recipes/bioconductor-spikein/post-link.sh
index 57a7e13c948a6..2b5335dd03814 100644
--- a/recipes/bioconductor-spikein/post-link.sh
+++ b/recipes/bioconductor-spikein/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "spikein-1.42.0"
+installBiocDataPackage.sh "spikein-1.44.0"
diff --git a/recipes/bioconductor-spikeinsubset/meta.yaml b/recipes/bioconductor-spikeinsubset/meta.yaml
index 7737f7b5325e7..1cbb90bd6c7ae 100644
--- a/recipes/bioconductor-spikeinsubset/meta.yaml
+++ b/recipes/bioconductor-spikeinsubset/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "SpikeInSubset" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 25b553c357880acdabf962253d55d69b
+  md5: 0c9b5af679c89a1468c9a6f581202e2b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spikeinsubset", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-spikeinsubset/post-link.sh b/recipes/bioconductor-spikeinsubset/post-link.sh
index 7151258b59659..0c176d193c9ac 100644
--- a/recipes/bioconductor-spikeinsubset/post-link.sh
+++ b/recipes/bioconductor-spikeinsubset/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "spikeinsubset-1.40.0"
+installBiocDataPackage.sh "spikeinsubset-1.42.0"
diff --git a/recipes/bioconductor-spikeli/meta.yaml b/recipes/bioconductor-spikeli/meta.yaml
index fe565d7c8c501..eaaa49bf1b204 100644
--- a/recipes/bioconductor-spikeli/meta.yaml
+++ b/recipes/bioconductor-spikeli/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.60.0" %}
+{% set version = "2.62.0" %}
 {% set name = "spikeLI" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7922faf962c15610b2a0f116187e1b1a
+  md5: 15e5851707938b83c34b9d5667d62f79
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spikeli", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-spiky/meta.yaml b/recipes/bioconductor-spiky/meta.yaml
index bb24ac3af4889..e7f1720f0e287 100644
--- a/recipes/bioconductor-spiky/meta.yaml
+++ b/recipes/bioconductor-spiky/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "spiky" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,38 +11,39 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 55cbf8a3742386f0db93aadf07b4306f
+  md5: 8f710d2ecca4f24247ab38805d665b41
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spiky", max_pin="x.x") }}'
   noarch: generic
 # Suggests: covr, testthat, rmarkdown, markdown, knitr, devtools, BSgenome.Mmusculus.UCSC.mm10.masked, BSgenome.Hsapiens.UCSC.hg38.masked, BiocManager
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-bamlss
     - r-base
     - r-blandaltmanleh
     - r-ggplot2
     - r-scales
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-bamlss
     - r-base
     - r-blandaltmanleh
diff --git a/recipes/bioconductor-spktools/meta.yaml b/recipes/bioconductor-spktools/meta.yaml
index d604e37b7aa86..e82233da53f09 100644
--- a/recipes/bioconductor-spktools/meta.yaml
+++ b/recipes/bioconductor-spktools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.56.0" %}
+{% set version = "1.58.0" %}
 {% set name = "spkTools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a32ef23d5786b41a3428e9b84edda198
+  md5: 9cc7d56d0cf0eec1e65d47d262525ba1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spktools", max_pin="x.x") }}'
   noarch: generic
 # Suggests: xtable
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-gtools
     - r-rcolorbrewer
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-gtools
     - r-rcolorbrewer
diff --git a/recipes/bioconductor-splatter/meta.yaml b/recipes/bioconductor-splatter/meta.yaml
index c196f33726a43..15276553de261 100644
--- a/recipes/bioconductor-splatter/meta.yaml
+++ b/recipes/bioconductor-splatter/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "splatter" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: a5dfb529cb37945588d026098a760bea
+  md5: 1afec799cae913802068b5b20b32a598
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-splatter", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BASiCS (>= 1.7.10), BiocManager, BiocSingular, BiocStyle, Biostrings, covr, cowplot, GenomeInfoDb, GenomicRanges, ggplot2 (>= 3.4.0), IRanges, igraph, knitr, limSolve, lme4, magick, mfa, phenopath, progress, preprocessCore, pscl, rmarkdown, scales, scater (>= 1.15.16), scDD, scran, SparseDC, spelling, testthat, VariantAnnotation, zinbwave,
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-checkmate >=2.0.0'
     - r-crayon
@@ -37,13 +38,13 @@ requirements:
     - r-rlang
     - r-withr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-checkmate >=2.0.0'
     - r-crayon
diff --git a/recipes/bioconductor-splicewiz/meta.yaml b/recipes/bioconductor-splicewiz/meta.yaml
index c949a95ada69b..9a264cf06a4ec 100644
--- a/recipes/bioconductor-splicewiz/meta.yaml
+++ b/recipes/bioconductor-splicewiz/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.2" %}
+{% set version = "1.4.0" %}
 {% set name = "SpliceWiz" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 14454891d1a6d00f4b3935681f0619de
+  md5: 95ad1603bebc847d12b7dc715aef923a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-splicewiz", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, openssl, crayon, splines, testthat (>= 3.0.0), DESeq2, limma, DoubleExpSeq, edgeR, DBI, GO.db, fgsea, Rsubread
 # SystemRequirements: C++11, GNU make
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-nxtirfdata >=1.6.0,<1.7.0'
-    - 'bioconductor-ompbam >=1.4.0,<1.5.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-nxtirfdata >=1.8.0,<1.9.0'
+    - 'bioconductor-ompbam >=1.6.0,<1.7.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-data.table
     - r-dt
@@ -69,26 +70,26 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-nxtirfdata >=1.6.0,<1.7.0'
-    - 'bioconductor-ompbam >=1.4.0,<1.5.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-nxtirfdata >=1.8.0,<1.9.0'
+    - 'bioconductor-ompbam >=1.6.0,<1.7.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-data.table
     - r-dt
diff --git a/recipes/bioconductor-splicingfactory/meta.yaml b/recipes/bioconductor-splicingfactory/meta.yaml
index 2a3a973d23961..79a03bd119400 100644
--- a/recipes/bioconductor-splicingfactory/meta.yaml
+++ b/recipes/bioconductor-splicingfactory/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "SplicingFactory" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 597502530bf80359bb918678702bb2b7
+  md5: 354167193190b04ec94fac9c097b4503
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-splicingfactory", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, ggplot2, tidyr
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-splicinggraphs/meta.yaml b/recipes/bioconductor-splicinggraphs/meta.yaml
index 70cfb611423c8..dd2329883597e 100644
--- a/recipes/bioconductor-splicinggraphs/meta.yaml
+++ b/recipes/bioconductor-splicinggraphs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "SplicingGraphs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,41 +11,42 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9d15a3c6a52e0cf2e5821f90fd992053
+  md5: 04e2a057bc1c6935ee13333acdf5ba52
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-splicinggraphs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: igraph, Gviz, TxDb.Hsapiens.UCSC.hg19.knownGene, RNAseqData.HNRNPC.bam.chr14, RUnit
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-igraph
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-igraph
 test:
diff --git a/recipes/bioconductor-splinetimer/meta.yaml b/recipes/bioconductor-splinetimer/meta.yaml
index add5dbe8d4d52..19a7f65b4f424 100644
--- a/recipes/bioconductor-splinetimer/meta.yaml
+++ b/recipes/bioconductor-splinetimer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "splineTimeR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cad5d2654b4b510de7aba9fefd73e46b
+  md5: 09454e29df75ff3f9d9e3f2780fb5db6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-splinetimer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-fis >=1.28.0,<1.29.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-fis >=1.30.0,<1.31.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - 'r-genenet >=1.2.13'
     - r-gtools
     - r-igraph
     - 'r-longitudinal >=1.1.12'
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-fis >=1.28.0,<1.29.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-fis >=1.30.0,<1.31.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - 'r-genenet >=1.2.13'
     - r-gtools
diff --git a/recipes/bioconductor-splinter/meta.yaml b/recipes/bioconductor-splinter/meta.yaml
index 76c565ec2b60b..e96e229c81b4a 100644
--- a/recipes/bioconductor-splinter/meta.yaml
+++ b/recipes/bioconductor-splinter/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "SPLINTER" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,44 +11,45 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cfa5400f767658eb668ccf62c50f4914
+  md5: f328ebcc0e4d27dee8a98c2e230bd8dc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-splinter", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - 'bioconductor-bsgenome.mmusculus.ucsc.mm9 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-seqlogo >=1.66.0,<1.67.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-seqlogo >=1.68.0,<1.69.0'
     - r-base
     - r-ggplot2
     - r-googlevis
     - r-plyr
     - r-stringr
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - 'bioconductor-bsgenome.mmusculus.ucsc.mm9 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-seqlogo >=1.66.0,<1.67.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-seqlogo >=1.68.0,<1.69.0'
     - r-base
     - r-ggplot2
     - r-googlevis
diff --git a/recipes/bioconductor-splots/meta.yaml b/recipes/bioconductor-splots/meta.yaml
index bb84e57882648..adc7ad8e35825 100644
--- a/recipes/bioconductor-splots/meta.yaml
+++ b/recipes/bioconductor-splots/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.66.0" %}
+{% set version = "1.68.0" %}
 {% set name = "splots" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,14 +11,15 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 6b86fd185efeaeb6bb38515bf577b0e2
+  md5: 5f497af3c7a5fcdbba178a1ff3b411b9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-splots", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BiocStyle, knitr, rmarkdown, assertthat, HD2013SGI
+# Suggests: BiocStyle, knitr, rmarkdown, assertthat, HD2013SGI, dplyr, ggplot2
 requirements:
   host:
     - r-base
@@ -33,7 +34,7 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: LGPL
   summary: 'Visualization of high-throughput assays in microtitre plate or slide format'
-  description: 'This package is provided to support legacy code and reverse dependencies, but it should not be used as a dependency for new code development. It provides a single function, plotScreen, for visualising data in microtitre plate or slide format. As a better alternative for such functionality, please consider the platetools package on CRAN (https://cran.r-project.org/package=platetools and https://github.com/Swarchal/platetools), or generic ggplot2 graphics functionality.'
+  description: 'This package is here to support legacy usages of it, but it should not be used for new code development. It provides a single function, plotScreen, for visualising data in microtitre plate or slide format. As a better alternative for such functionality, please consider the platetools package on CRAN (https://cran.r-project.org/package=platetools and https://github.com/Swarchal/platetools), or ggplot2 (geom_raster, facet_wrap) as exemplified in the vignette of this package.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/LGPL-3'
 extra:
   identifiers:
diff --git a/recipes/bioconductor-spotclean/meta.yaml b/recipes/bioconductor-spotclean/meta.yaml
index e8d0b89ae307f..8832e69eae5ea 100644
--- a/recipes/bioconductor-spotclean/meta.yaml
+++ b/recipes/bioconductor-spotclean/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.1" %}
 {% set name = "SpotClean" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 649c0a781c17b134925269f6696e8bf0
+  md5: b6e7be89394d959837993f3fd385ad55
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spotclean", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 2.1.0), knitr, BiocStyle, rmarkdown, R.utils, spelling
 requirements:
   host:
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -37,10 +38,10 @@ requirements:
     - r-tibble
     - r-viridis
   run:
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-spotlight/meta.yaml b/recipes/bioconductor-spotlight/meta.yaml
index 898bf91b3f4fe..a29d88c4d27da 100644
--- a/recipes/bioconductor-spotlight/meta.yaml
+++ b/recipes/bioconductor-spotlight/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.1" %}
+{% set version = "1.6.3" %}
 {% set name = "SPOTlight" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e3cf368e27ab8dba4f20ca904271c4ea
+  md5: 00759051612f8f17697afd03507d6d8c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spotlight", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BiocStyle, colorBlindness, ExperimentHub, DelayedArray, ggcorrplot, grDevices, grid, igraph, jpeg, knitr, methods, png, rmarkdown, scater, scatterpie, scran, Seurat, SeuratObject, SpatialExperiment, SummarizedExperiment, S4Vectors, TabulaMurisSenisData, TENxVisiumData, testthat
+# Suggests: BiocStyle, colorBlindness, DelayedArray, DropletUtils, ExperimentHub, ggcorrplot, grDevices, grid, igraph, jpeg, knitr, methods, png, rmarkdown, scater, scatterpie, scran, Seurat, SeuratObject, SpatialExperiment, SummarizedExperiment, S4Vectors, TabulaMurisSenisData, TENxVisiumData, testthat
 requirements:
   host:
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - r-ggplot2
     - r-matrix
@@ -29,7 +30,7 @@ requirements:
     - r-nmf
     - r-nnls
   run:
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - r-ggplot2
     - r-matrix
diff --git a/recipes/bioconductor-spqn/meta.yaml b/recipes/bioconductor-spqn/meta.yaml
index 6dd80e885fe8d..c6aa1696bc6a1 100644
--- a/recipes/bioconductor-spqn/meta.yaml
+++ b/recipes/bioconductor-spqn/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "spqn" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d36cc99c0915e86aba64cafad9a690af
+  md5: 63599cd8ebe97287b176d98cb3d9de43
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spqn", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, tools, spqnData (>= 0.99.3), RUnit
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-ggridges
     - r-matrixstats
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-ggridges
diff --git a/recipes/bioconductor-spqndata/meta.yaml b/recipes/bioconductor-spqndata/meta.yaml
index e8d06d0ab7422..efac37f68f5cb 100644
--- a/recipes/bioconductor-spqndata/meta.yaml
+++ b/recipes/bioconductor-spqndata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "spqnData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1588ea6c755eb468f60af1a67712cac0
+  md5: 453bf944ea40956afef2bd868f92d747
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spqndata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-spqndata/post-link.sh b/recipes/bioconductor-spqndata/post-link.sh
index eb0052e45a644..4468f52ef6133 100644
--- a/recipes/bioconductor-spqndata/post-link.sh
+++ b/recipes/bioconductor-spqndata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "spqndata-1.12.0"
+installBiocDataPackage.sh "spqndata-1.14.0"
diff --git a/recipes/bioconductor-spsimseq/meta.yaml b/recipes/bioconductor-spsimseq/meta.yaml
index c327a1072ec78..e85f49127980d 100644
--- a/recipes/bioconductor-spsimseq/meta.yaml
+++ b/recipes/bioconductor-spsimseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "SPsimSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 433fef1a4f51ce4bbe425b88d9b7eec7
+  md5: 1ccc188618b92dcf94489a00d7faa5b4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-spsimseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, LSD, testthat, BiocStyle
 requirements:
   host:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - r-fitdistrplus
     - r-hmisc
     - r-mvtnorm
     - r-wgcna
   run:
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-phyloseq >=1.44.0,<1.45.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-phyloseq >=1.46.0,<1.47.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - r-fitdistrplus
     - r-hmisc
diff --git a/recipes/bioconductor-sqldataframe/meta.yaml b/recipes/bioconductor-sqldataframe/meta.yaml
index 911d736933457..4ab1d6af33f2c 100644
--- a/recipes/bioconductor-sqldataframe/meta.yaml
+++ b/recipes/bioconductor-sqldataframe/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "SQLDataFrame" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e85f08b5a38073be4f7ae655d57c139f
+  md5: 4153fe66ee281c087e77c6706a2b2faf
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sqldataframe", max_pin="x.x") }}'
   noarch: generic
-# Suggests: RMySQL, bigrquery, testthat, knitr, rmarkdown, DelayedArray
+# Suggests: RMySQL, bigrquery, testthat, knitr, rmarkdown, DelayedArray, GenomicRanges
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dbi
     - 'r-dbplyr >=1.4.0'
@@ -31,8 +32,8 @@ requirements:
     - r-rsqlite
     - r-tibble
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dbi
     - 'r-dbplyr >=1.4.0'
diff --git a/recipes/bioconductor-squadd/meta.yaml b/recipes/bioconductor-squadd/meta.yaml
index ad4a8ea5b03e9..0a8548a01dd6e 100644
--- a/recipes/bioconductor-squadd/meta.yaml
+++ b/recipes/bioconductor-squadd/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.50.0" %}
+{% set version = "1.52.0" %}
 {% set name = "SQUADD" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 07c942ac0b69c5a285a49341451afb5f
+  md5: 8837e27ab065ddae145da3cc5ca2ad32
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-squadd", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-sracipe/meta.yaml b/recipes/bioconductor-sracipe/meta.yaml
index 858cccbb7efec..3b7c215452e39 100644
--- a/recipes/bioconductor-sracipe/meta.yaml
+++ b/recipes/bioconductor-sracipe/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "sRACIPE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b032be2639312a58690b6190dca69d2f
+  md5: 84a1b79b944741fc6ecab26168020841
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sracipe", max_pin="x.x") }}'
 # Suggests: knitr, BiocStyle, rmarkdown, tinytest, doFuture
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-gplots
@@ -37,9 +38,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-gplots
diff --git a/recipes/bioconductor-sradb/meta.yaml b/recipes/bioconductor-sradb/meta.yaml
index d88957529f1e9..25db5e723e5ca 100644
--- a/recipes/bioconductor-sradb/meta.yaml
+++ b/recipes/bioconductor-sradb/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.62.0" %}
+{% set version = "1.64.0" %}
 {% set name = "SRAdb" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1a74df8413362db72d8e415e5bb2dcdf
+  md5: 6bc0aa8bd176c1b388f4da270b4f668b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sradb", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Rgraphviz
 requirements:
   host:
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-rcurl
     - r-rsqlite
   run:
-    - 'bioconductor-geoquery >=2.68.0,<2.69.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-geoquery >=2.70.0,<2.71.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-rcurl
     - r-rsqlite
diff --git a/recipes/bioconductor-srnadiff/build.sh b/recipes/bioconductor-srnadiff/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-srnadiff/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-srnadiff/meta.yaml b/recipes/bioconductor-srnadiff/meta.yaml
new file mode 100644
index 0000000000000..916fb53ca5359
--- /dev/null
+++ b/recipes/bioconductor-srnadiff/meta.yaml
@@ -0,0 +1,79 @@
+{% set version = "1.22.0" %}
+{% set name = "srnadiff" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
+  md5: 0125777227eab34f7839615139aacb91
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-srnadiff", max_pin="x.x") }}'
+# Suggests: knitr, rmarkdown, testthat, BiocManager, BiocStyle
+# SystemRequirements: C++11
+requirements:
+  host:
+    - 'bioconductor-bayseq >=2.36.0,<2.37.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-biocmanager
+    - r-devtools
+    - 'r-rcpp >=0.12.8'
+    - libblas
+    - liblapack
+  run:
+    - 'bioconductor-bayseq >=2.36.0,<2.37.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocstyle >=2.30.0,<2.31.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-biocmanager
+    - r-devtools
+    - 'r-rcpp >=0.12.8'
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - make
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'Finding differentially expressed unannotated genomic regions from RNA-seq data'
+  description: 'srnadiff is a package that finds differently expressed regions from RNA-seq data at base-resolution level without relying on existing annotation. To do so, the package implements the identify-then-annotate methodology that builds on the idea of combining two pipelines approachs differential expressed regions detection and differential expression quantification. It reads BAM files as input, and outputs a list differentially regions, together with the adjusted p-values.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-sscu/meta.yaml b/recipes/bioconductor-sscu/meta.yaml
index 674ac072e84b2..2d4fb8c20013f 100644
--- a/recipes/bioconductor-sscu/meta.yaml
+++ b/recipes/bioconductor-sscu/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.30.0" %}
+{% set version = "2.32.0" %}
 {% set name = "sscu" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 361e476bdd720a428c36c352bccb9802
+  md5: 3856e06321ac866e2664573b452c6a85
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sscu", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - 'r-seqinr >=3.1-3'
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - 'r-seqinr >=3.1-3'
 test:
diff --git a/recipes/bioconductor-sseq/meta.yaml b/recipes/bioconductor-sseq/meta.yaml
index 0e4be979404ea..2ecb6cdba2b18 100644
--- a/recipes/bioconductor-sseq/meta.yaml
+++ b/recipes/bioconductor-sseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "sSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 43ed8739950672325635df07770212a3
+  md5: 9276919acd944871a6e05a8dbeed6b9f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sseq", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-ssize/meta.yaml b/recipes/bioconductor-ssize/meta.yaml
index cb93b69f91109..e7e2942a52185 100644
--- a/recipes/bioconductor-ssize/meta.yaml
+++ b/recipes/bioconductor-ssize/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.74.0" %}
+{% set version = "1.76.0" %}
 {% set name = "ssize" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 4b0c875620b8d1a31e166b27a3538a6d
+  md5: b61fbe78b68fecd3090e1c658a284b83
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ssize", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-ssnappy/meta.yaml b/recipes/bioconductor-ssnappy/meta.yaml
index 7160a4a6be7a5..5b49df2a9511a 100644
--- a/recipes/bioconductor-ssnappy/meta.yaml
+++ b/recipes/bioconductor-ssnappy/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.1" %}
+{% set version = "1.6.1" %}
 {% set name = "sSNAPPY" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,61 +11,55 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 263387c3d870cf83e91c5da6a2cbac8c
+  md5: 15f7a550e110c069710c3f6572a06e83
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
-# Suggests: BiocManager, BiocStyle, cowplot, DT, htmltools, knitr, pander, rmarkdown, spelling, testthat (>= 3.0.0), tidyverse
+  run_exports: '{{ pin_subpackage("bioconductor-ssnappy", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocManager, BiocStyle, colorspace, cowplot, DT, htmltools, knitr, pander, patchwork, rmarkdown, spelling, testthat (>= 3.0.0), tidyverse
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-graphite >=1.46.0,<1.47.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-graphite >=1.48.0,<1.49.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-dplyr >=1.1'
     - r-ggforce
     - r-ggplot2
     - r-ggraph
+    - r-gtools
     - r-igraph
     - r-magrittr
     - r-pheatmap
-    - r-rcpp
-    - r-rcpparmadillo
     - r-reshape2
     - r-rlang
     - r-stringr
     - r-tibble
-    - libblas
-    - liblapack
+    - r-tidyr
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-graphite >=1.46.0,<1.47.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-graphite >=1.48.0,<1.49.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-dplyr >=1.1'
     - r-ggforce
     - r-ggplot2
     - r-ggraph
+    - r-gtools
     - r-igraph
     - r-magrittr
     - r-pheatmap
-    - r-rcpp
-    - r-rcpparmadillo
     - r-reshape2
     - r-rlang
     - r-stringr
     - r-tibble
-  build:
-    - {{ compiler('c') }}
-    - {{ compiler('cxx') }}
-    - make
+    - r-tidyr
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-sspaths/meta.yaml b/recipes/bioconductor-sspaths/meta.yaml
index c9f863931d308..e7f074e25161c 100644
--- a/recipes/bioconductor-sspaths/meta.yaml
+++ b/recipes/bioconductor-sspaths/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "ssPATHS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 31fd9abb3ebbad68e476099511cd0161
+  md5: 121909c57596e3cd0d817cac2deb22c9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sspaths", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ggplot2, testthat (>= 2.1.0)
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dml
     - r-mess
     - r-rocr
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dml
     - r-mess
diff --git a/recipes/bioconductor-ssrch/meta.yaml b/recipes/bioconductor-ssrch/meta.yaml
index 04d1b9d146627..b3495f2f86488 100644
--- a/recipes/bioconductor-ssrch/meta.yaml
+++ b/recipes/bioconductor-ssrch/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "ssrch" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 4cb99d0771a2949808a20c55c687044e
+  md5: 095c153ce56b89d040c929a8c1af6840
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ssrch", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, rmarkdown, BiocStyle
 requirements:
diff --git a/recipes/bioconductor-ssviz/meta.yaml b/recipes/bioconductor-ssviz/meta.yaml
index 717d098cdee5d..87ac9b79c48bf 100644
--- a/recipes/bioconductor-ssviz/meta.yaml
+++ b/recipes/bioconductor-ssviz/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "ssviz" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 3d62d00ec992873217d787aa0aee02e6
+  md5: 00bd4a7d6a57af51b74187993bdf84c4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ssviz", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-ggplot2
     - r-rcolorbrewer
     - r-reshape
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-ggplot2
     - r-rcolorbrewer
diff --git a/recipes/bioconductor-stager/meta.yaml b/recipes/bioconductor-stager/meta.yaml
index 170a3ed5a0ef3..afdbee6634400 100644
--- a/recipes/bioconductor-stager/meta.yaml
+++ b/recipes/bioconductor-stager/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "stageR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 53be8e8637660075a5dd3a5788bb887e
+  md5: cdbf6ab3c35c3e019b0ce786ad85eb38
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-stager", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, methods, Biobase, edgeR, limma, DEXSeq, testthat
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-standr/meta.yaml b/recipes/bioconductor-standr/meta.yaml
index 976227bf60283..c54e0c516383c 100644
--- a/recipes/bioconductor-standr/meta.yaml
+++ b/recipes/bioconductor-standr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.2" %}
+{% set version = "1.6.0" %}
 {% set name = "standR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a59d4f2ed1a9301c835e2c4bf83d74ea
+  md5: 94e29a2001fbb9d0bfa1488ae7039aa7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-standr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, ExperimentHub, rmarkdown, scater, uwot, ggpubr, ggrepel, cluster, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-ruvseq >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-ruvseq >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggalluvial
@@ -42,15 +43,15 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-ruvseq >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-ruvseq >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggalluvial
diff --git a/recipes/bioconductor-starank/meta.yaml b/recipes/bioconductor-starank/meta.yaml
index e820622caca23..684cceb9f69d6 100644
--- a/recipes/bioconductor-starank/meta.yaml
+++ b/recipes/bioconductor-starank/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "staRank" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0125b4deecba9bf4db3f9bcac2326be7
+  md5: 6284ebc665a24e39437e707b4fc1ad80
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-starank", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-cellhts2 >=2.64.0,<2.65.0'
+    - 'bioconductor-cellhts2 >=2.66.0,<2.67.0'
     - r-base
   run:
-    - 'bioconductor-cellhts2 >=2.64.0,<2.65.0'
+    - 'bioconductor-cellhts2 >=2.66.0,<2.67.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-starbiotrek/meta.yaml b/recipes/bioconductor-starbiotrek/meta.yaml
index 6e426df618368..1ca02bc22bc51 100644
--- a/recipes/bioconductor-starbiotrek/meta.yaml
+++ b/recipes/bioconductor-starbiotrek/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "StarBioTrek" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cba511d5a1ac1494e491455c893ed3d9
+  md5: a1a892a63f09a57e18eb825ab8a0ec7e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-starbiotrek", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, devtools, roxygen2, qgraph, png, grid
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-graphite >=1.46.0,<1.47.0'
-    - 'bioconductor-spidermir >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-graphite >=1.48.0,<1.49.0'
+    - 'bioconductor-spidermir >=1.32.0,<1.33.0'
     - r-base
     - r-e1071
     - r-ggplot2
@@ -32,9 +33,9 @@ requirements:
     - r-reshape2
     - r-rocr
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-graphite >=1.46.0,<1.47.0'
-    - 'bioconductor-spidermir >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-graphite >=1.48.0,<1.49.0'
+    - 'bioconductor-spidermir >=1.32.0,<1.33.0'
     - r-base
     - r-e1071
     - r-ggplot2
diff --git a/recipes/bioconductor-stategra/meta.yaml b/recipes/bioconductor-stategra/meta.yaml
index 8693cc153ae6b..21e069eaf1b45 100644
--- a/recipes/bioconductor-stategra/meta.yaml
+++ b/recipes/bioconductor-stategra/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "STATegRa" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c23bae33718cd7c94ef30beb97344cb0
+  md5: be42ca7786d4b038ad3f706492c74022
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-stategra", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics, knitr (>= 1.6), rmarkdown, BiocStyle (>= 1.3), roxygen2, doSNOW
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-calibrate
     - r-foreach
@@ -33,10 +34,10 @@ requirements:
     - r-gridextra
     - r-mass
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-calibrate
     - r-foreach
diff --git a/recipes/bioconductor-statial/meta.yaml b/recipes/bioconductor-statial/meta.yaml
index aeef3a2b9c3cd..d414780320fc2 100644
--- a/recipes/bioconductor-statial/meta.yaml
+++ b/recipes/bioconductor-statial/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.5" %}
 {% set name = "Statial" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,45 +11,60 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ef5801f844d0bc314ecf0e208e2a29f0
+  md5: e7151f23bb952401803e4d239390c210
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-statial", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BiocStyle, knitr, testthat (>= 3.0.0)
+# Suggests: BiocStyle, knitr, testthat (>= 3.0.0), ClassifyR, spicyR, ggsurvfit, lisaClust, survival
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-concaveman
     - r-data.table
     - r-dplyr
     - r-ggplot2
+    - r-magrittr
+    - r-plotly
+    - r-purrr
+    - r-ranger
     - r-spatstat.explore
     - r-spatstat.geom
     - r-stringr
     - r-tibble
     - r-tidyr
     - r-tidyselect
-    - r-tidyverse
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-concaveman
     - r-data.table
     - r-dplyr
     - r-ggplot2
+    - r-magrittr
+    - r-plotly
+    - r-purrr
+    - r-ranger
     - r-spatstat.explore
     - r-spatstat.geom
     - r-stringr
     - r-tibble
     - r-tidyr
     - r-tidyselect
-    - r-tidyverse
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-stattarget/meta.yaml b/recipes/bioconductor-stattarget/meta.yaml
index ae19bb6675d09..c3b72f32f6d1c 100644
--- a/recipes/bioconductor-stattarget/meta.yaml
+++ b/recipes/bioconductor-stattarget/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "statTarget" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: bebae7ea2293cdbc8e26baddba59605c
+  md5: 8a504e674b8756201ca93b590dd0b078
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-stattarget", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-roc >=1.76.0,<1.77.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-roc >=1.78.0,<1.79.0'
     - r-base
     - r-pdist
     - r-pls
@@ -30,8 +31,8 @@ requirements:
     - r-randomforest
     - r-rrcov
   run:
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
-    - 'bioconductor-roc >=1.76.0,<1.77.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
+    - 'bioconductor-roc >=1.78.0,<1.79.0'
     - r-base
     - r-pdist
     - r-pls
diff --git a/recipes/bioconductor-stdeconvolve/build_failure.linux-64.yaml b/recipes/bioconductor-stdeconvolve/build_failure.linux-64.yaml
index d06518ec443cf..46b164e797e06 100644
--- a/recipes/bioconductor-stdeconvolve/build_failure.linux-64.yaml
+++ b/recipes/bioconductor-stdeconvolve/build_failure.linux-64.yaml
@@ -1,4 +1,4 @@
-recipe_sha: 8b208f8587b5f20c9475a1a086aa90016f4f780fe772c97b3e6a7391f4848065  # The commit at which this recipe failed to build.
+recipe_sha: b11c54aa8b5803ac796aadaf1ab911295658038c435eea768cf62514aa5c4e79  # The hash of the recipe's meta.yaml at which this recipe failed to build.
 skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
 log: |2-
       r-vctrs:                   0.6.3-r43ha503ecb_0        conda-forge
@@ -102,3 +102,7 @@ log: |2-
       raise subprocess.CalledProcessError(proc.returncode, _args)
   subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/bioconductor-stdeconvolve_1689833080445/work/conda_build.sh']' returned non-zero exit status 1.
 # Last 100 lines of the build log.
+reason: |-
+  07:50:52 BIOCONDA INFO (OUT) ERROR: dependency ‘liger’ is not available for package ‘STdeconvolve’
+category: |-
+  dependency issue
diff --git a/recipes/bioconductor-stdeconvolve/meta.yaml b/recipes/bioconductor-stdeconvolve/meta.yaml
index 1834a810f856e..0e9d14b87e1da 100644
--- a/recipes/bioconductor-stdeconvolve/meta.yaml
+++ b/recipes/bioconductor-stdeconvolve/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "STdeconvolve" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5a5cf6d8c89d292cd28df0c245c25d51
+  md5: 2908e0d59713b2c3ef6c7bc549d0d123
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-stdeconvolve", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, rmarkdown, testthat, rcmdcheck, gplots, gridExtra, hash, dplyr, parallel
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-clue
     - r-ggplot2
@@ -34,7 +35,7 @@ requirements:
     - r-topicmodels
     - r-viridis
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-clue
     - r-ggplot2
diff --git a/recipes/bioconductor-stemhypoxia/meta.yaml b/recipes/bioconductor-stemhypoxia/meta.yaml
index c3a6d2e8b2cfc..1bf4c404eb5a3 100644
--- a/recipes/bioconductor-stemhypoxia/meta.yaml
+++ b/recipes/bioconductor-stemhypoxia/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "stemHypoxia" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 53b049bafffb969dea77f35479720221
+  md5: 22ec9d76cac05ac7118873f7815225ba
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-stemhypoxia", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-stemhypoxia/post-link.sh b/recipes/bioconductor-stemhypoxia/post-link.sh
index c47b0e4558bb3..519f3ce64e7b7 100644
--- a/recipes/bioconductor-stemhypoxia/post-link.sh
+++ b/recipes/bioconductor-stemhypoxia/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "stemhypoxia-1.36.0"
+installBiocDataPackage.sh "stemhypoxia-1.38.0"
diff --git a/recipes/bioconductor-stepnorm/meta.yaml b/recipes/bioconductor-stepnorm/meta.yaml
index 3b3f5a1ca9c77..a109683e28058 100644
--- a/recipes/bioconductor-stepnorm/meta.yaml
+++ b/recipes/bioconductor-stepnorm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "stepNorm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9a7edda3646c8d02d776e7e8b62ef64d
+  md5: a8f357efcff85a6d723734d6e0a91ba0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-stepnorm", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
     - r-mass
   run:
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
     - r-mass
 test:
diff --git a/recipes/bioconductor-stexampledata/meta.yaml b/recipes/bioconductor-stexampledata/meta.yaml
index 60acf470da223..422e84e76f070 100644
--- a/recipes/bioconductor-stexampledata/meta.yaml
+++ b/recipes/bioconductor-stexampledata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "STexampleData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 21ccea26e0677e8ff1ec5ddfe7da0a32
+  md5: 5fa4bfb2e58e7f6bbcd957aa1aa7e938
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-stexampledata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, BumpyMatrix
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-stexampledata/post-link.sh b/recipes/bioconductor-stexampledata/post-link.sh
index 20643afbd8feb..6dea914d714c1 100644
--- a/recipes/bioconductor-stexampledata/post-link.sh
+++ b/recipes/bioconductor-stexampledata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "stexampledata-1.8.0"
+installBiocDataPackage.sh "stexampledata-1.10.0"
diff --git a/recipes/bioconductor-stjoincount/meta.yaml b/recipes/bioconductor-stjoincount/meta.yaml
index 9de2419b16348..38b3392c1fcd2 100644
--- a/recipes/bioconductor-stjoincount/meta.yaml
+++ b/recipes/bioconductor-stjoincount/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "stJoincount" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6bf5da007b58f88706124d298422dde7
+  md5: 85dd3f81a773ede72a70185cb4132d2b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-stjoincount", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -33,8 +34,8 @@ requirements:
     - r-sp
     - r-spdep
   run:
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-stjudem/meta.yaml b/recipes/bioconductor-stjudem/meta.yaml
index e49fa8565cb43..f224b6a78e11d 100644
--- a/recipes/bioconductor-stjudem/meta.yaml
+++ b/recipes/bioconductor-stjudem/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "stjudem" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d793d5b3f5abf684f188723111097faf
+  md5: 4c6868a60726df51408834a227e551bf
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-stjudem", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-stjudem/post-link.sh b/recipes/bioconductor-stjudem/post-link.sh
index 98f05a794211c..bbadc4df501c3 100644
--- a/recipes/bioconductor-stjudem/post-link.sh
+++ b/recipes/bioconductor-stjudem/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "stjudem-1.40.0"
+installBiocDataPackage.sh "stjudem-1.42.0"
diff --git a/recipes/bioconductor-strandcheckr/meta.yaml b/recipes/bioconductor-strandcheckr/meta.yaml
index efba83d3688df..21ce40d74e7fd 100644
--- a/recipes/bioconductor-strandcheckr/meta.yaml
+++ b/recipes/bioconductor-strandcheckr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "strandCheckR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3212c9f0350eb46edfa4d2aed1741f3f
+  md5: d9544940bb53aa96ca4e14fda712581d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-strandcheckr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, testthat
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.17.0,<3.18.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.18.0,<3.19.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -38,14 +39,14 @@ requirements:
     - r-rmarkdown
     - r-stringr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.17.0,<3.18.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.18.0,<3.19.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-streamer/meta.yaml b/recipes/bioconductor-streamer/meta.yaml
index 683510919b546..b98467148e69a 100644
--- a/recipes/bioconductor-streamer/meta.yaml
+++ b/recipes/bioconductor-streamer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "Streamer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d23715dbf4aec29873e6c2bfd6257817
+  md5: d41ea52d04a44b0705846078ffe3b1e7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-streamer", max_pin="x.x") }}'
 # Suggests: RUnit, Rsamtools (>= 1.5.53), GenomicAlignments, Rgraphviz
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-stringdb/meta.yaml b/recipes/bioconductor-stringdb/meta.yaml
index b7c61cecb2c7e..64027a236667d 100644
--- a/recipes/bioconductor-stringdb/meta.yaml
+++ b/recipes/bioconductor-stringdb/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.12.0" %}
+{% set version = "2.14.0" %}
 {% set name = "STRINGdb" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 099f3db99ae7033c75db37df090e8d3e
+  md5: 6dc5819519574f0656e4b811e4618db7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-stringdb", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, BiocGenerics
 requirements:
diff --git a/recipes/bioconductor-struct/meta.yaml b/recipes/bioconductor-struct/meta.yaml
index 92e18d7183956..6436c5e2462f7 100644
--- a/recipes/bioconductor-struct/meta.yaml
+++ b/recipes/bioconductor-struct/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "struct" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 63b865919a93b7112c758393c9b9795b
+  md5: ef5fb8febc9f7bfed87fba9bc24cbebc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-struct", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, rstudioapi, rmarkdown, covr, BiocStyle, openxlsx, ggplot2, magick
 requirements:
   host:
-    - 'bioconductor-rols >=2.28.0,<2.29.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-rols >=2.30.0,<2.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-knitr
     - r-ontologyindex
   run:
-    - 'bioconductor-rols >=2.28.0,<2.29.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-rols >=2.30.0,<2.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-knitr
     - r-ontologyindex
diff --git a/recipes/bioconductor-structstrings/meta.yaml b/recipes/bioconductor-structstrings/meta.yaml
index 64c50442ec9f0..adcd3be37235e 100644
--- a/recipes/bioconductor-structstrings/meta.yaml
+++ b/recipes/bioconductor-structstrings/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "Structstrings" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 30a130dd232ccb09f2680746ae3c65f2
+  md5: 8d4afbd61a5546b52947869b7912eecb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-structstrings", max_pin="x.x") }}'
 # Suggests: testthat, knitr, rmarkdown, tRNAscanImport, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-crayon
     - r-stringi
@@ -32,11 +33,11 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-crayon
     - r-stringi
diff --git a/recipes/bioconductor-structtoolbox/meta.yaml b/recipes/bioconductor-structtoolbox/meta.yaml
index 47a1b7c1c2bfa..4a6d887b6e887 100644
--- a/recipes/bioconductor-structtoolbox/meta.yaml
+++ b/recipes/bioconductor-structtoolbox/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "structToolbox" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e9f40396d0d95ad92e27bee94c382493
+  md5: d6e4aa6631f797571a7ec07348cfbd30
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-structtoolbox", max_pin="x.x") }}'
   noarch: generic
 # Suggests: agricolae, BiocFileCache, BiocStyle, car, covr, cowplot, e1071, emmeans, ggdendro, knitr, magick, nlme, openxlsx, pls, pmp, reshape2, ropls, rmarkdown, Rtsne, testthat, rappdirs
 requirements:
   host:
-    - 'bioconductor-struct >=1.12.0,<1.13.0'
+    - 'bioconductor-struct >=1.14.0,<1.15.0'
     - r-base
     - r-ggplot2
     - r-ggthemes
@@ -29,7 +30,7 @@ requirements:
     - r-scales
     - r-sp
   run:
-    - 'bioconductor-struct >=1.12.0,<1.13.0'
+    - 'bioconductor-struct >=1.14.0,<1.15.0'
     - r-base
     - r-ggplot2
     - r-ggthemes
diff --git a/recipes/bioconductor-structuralvariantannotation/meta.yaml b/recipes/bioconductor-structuralvariantannotation/meta.yaml
index 56b5c9d69db2d..33f925708abe9 100644
--- a/recipes/bioconductor-structuralvariantannotation/meta.yaml
+++ b/recipes/bioconductor-structuralvariantannotation/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "StructuralVariantAnnotation" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,42 +11,43 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b202869069b95a7fc763f81e45a20f5d
+  md5: d72d8c88083ed0fc9319afa075360841
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-structuralvariantannotation", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ggplot2, devtools, testthat (>= 2.1.0), roxygen2, rmarkdown, tidyverse, knitr, ggbio, biovizBase, TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome.Hsapiens.UCSC.hg19,
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-assertthat
     - r-base
     - r-dplyr
     - r-rlang
     - r-stringr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-assertthat
     - r-base
     - r-dplyr
diff --git a/recipes/bioconductor-subcellbarcode/meta.yaml b/recipes/bioconductor-subcellbarcode/meta.yaml
index 2bc92431495c5..e6f6ea30837ae 100644
--- a/recipes/bioconductor-subcellbarcode/meta.yaml
+++ b/recipes/bioconductor-subcellbarcode/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "SubCellBarCode" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6d51692e771904243e46346f6db1229b
+  md5: 9b3f34495b8132c4cbdc426e27ffc740
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-subcellbarcode", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - r-caret
     - r-e1071
@@ -33,8 +34,8 @@ requirements:
     - r-rtsne
     - r-scatterplot3d
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - r-caret
     - r-e1071
diff --git a/recipes/bioconductor-subseq/meta.yaml b/recipes/bioconductor-subseq/meta.yaml
index 5296f6e59b98d..f482cf4d343f7 100644
--- a/recipes/bioconductor-subseq/meta.yaml
+++ b/recipes/bioconductor-subseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "subSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 01708051b6affd954eb9c2b625d6c0db
+  md5: 81acfd896fc4e8c52e50475dca2c1519
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-subseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: limma, edgeR, DESeq2, DEXSeq (>= 1.9.7), testthat, knitr
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
     - r-data.table
     - r-digest
@@ -31,8 +32,8 @@ requirements:
     - r-magrittr
     - r-tidyr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
     - r-data.table
     - r-digest
diff --git a/recipes/bioconductor-sugarcanecdf/meta.yaml b/recipes/bioconductor-sugarcanecdf/meta.yaml
index 98084152b6f97..f35923e94468a 100644
--- a/recipes/bioconductor-sugarcanecdf/meta.yaml
+++ b/recipes/bioconductor-sugarcanecdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "sugarcanecdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: f66d51868068f83d3693d3cb05be418a
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sugarcanecdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-sugarcaneprobe/meta.yaml b/recipes/bioconductor-sugarcaneprobe/meta.yaml
index 3c7b6e3a9c55b..206f4292a4db3 100644
--- a/recipes/bioconductor-sugarcaneprobe/meta.yaml
+++ b/recipes/bioconductor-sugarcaneprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "sugarcaneprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 66c101ac73e9235d258b9f996c42778e
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sugarcaneprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-suitor/meta.yaml b/recipes/bioconductor-suitor/meta.yaml
index 707ed676d00f7..2c3b4b7017d9d 100644
--- a/recipes/bioconductor-suitor/meta.yaml
+++ b/recipes/bioconductor-suitor/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "SUITOR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7e3df0f3c1651702438aecf49a67fb7f
+  md5: 5f4a5ea607ef7551025cf8b425d20bc7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-suitor", max_pin="x.x") }}'
 # Suggests: devtools, MutationalPatterns, RUnit, BiocManager, BiocGenerics, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-ggplot2
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-ggplot2
   build:
diff --git a/recipes/bioconductor-summarizedbenchmark/meta.yaml b/recipes/bioconductor-summarizedbenchmark/meta.yaml
index ff5f061ec8208..fc6634da01088 100644
--- a/recipes/bioconductor-summarizedbenchmark/meta.yaml
+++ b/recipes/bioconductor-summarizedbenchmark/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.18.0" %}
+{% set version = "2.20.0" %}
 {% set name = "SummarizedBenchmark" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e72a284cb81ab58625cbc15c12b891fb
+  md5: f967c7e3db84713c2db5a2b0f1999ce4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-summarizedbenchmark", max_pin="x.x") }}'
   noarch: generic
 # Suggests: iCOBRA, BiocStyle, rmarkdown, knitr, magrittr, IHW, qvalue, testthat, DESeq2, edgeR, limma, tximport, readr, scRNAseq, splatter, scater, rnaseqcomp, biomaRt
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-crayon
     - r-digest
@@ -38,10 +39,10 @@ requirements:
     - r-tidyr
     - r-upsetr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-crayon
     - r-digest
diff --git a/recipes/bioconductor-summarizedexperiment/meta.yaml b/recipes/bioconductor-summarizedexperiment/meta.yaml
index e2e9d98423b38..26284256593de 100644
--- a/recipes/bioconductor-summarizedexperiment/meta.yaml
+++ b/recipes/bioconductor-summarizedexperiment/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.2" %}
+{% set version = "1.32.0" %}
 {% set name = "SummarizedExperiment" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,37 +11,38 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3785779b5e61a51d2be4f71c46e3b67a
+  md5: cf4b430247b40acb2be8e6c9ecf3aac7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-summarizedexperiment", max_pin="x.x") }}'
   noarch: generic
 # Suggests: HDF5Array (>= 1.7.5), annotate, AnnotationDbi, hgu95av2.db, GenomicFeatures, TxDb.Hsapiens.UCSC.hg19.knownGene, jsonlite, rhdf5, airway (>= 1.15.1), BiocStyle, knitr, rmarkdown, RUnit, testthat, digest
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-s4arrays >=1.0.0,<1.1.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4arrays >=1.2.0,<1.3.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-matrix
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-s4arrays >=1.0.0,<1.1.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4arrays >=1.2.0,<1.3.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-matrix
 test:
diff --git a/recipes/bioconductor-summix/meta.yaml b/recipes/bioconductor-summix/meta.yaml
index 494356af38ef0..9426ca82a1bea 100644
--- a/recipes/bioconductor-summix/meta.yaml
+++ b/recipes/bioconductor-summix/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.6.0" %}
+{% set version = "2.8.0" %}
 {% set name = "Summix" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d845748231aaea3953d1bb4814764356
+  md5: 74d3140f7f5db9a648955b81abdfb769
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-summix", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, markdown, knitr
 requirements:
diff --git a/recipes/bioconductor-supersigs/meta.yaml b/recipes/bioconductor-supersigs/meta.yaml
index d75f2dbbc2cc4..7eb7f89d459f7 100644
--- a/recipes/bioconductor-supersigs/meta.yaml
+++ b/recipes/bioconductor-supersigs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "supersigs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 42a9e56f253261e8adece79a7db5eb2a
+  md5: 35df3e9fd0272854b23baf15d93d300f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-supersigs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg38, knitr, rmarkdown, ggplot2, testthat, VariantAnnotation
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - r-caret
@@ -31,8 +32,8 @@ requirements:
     - r-rsample
     - r-tidyr
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - r-caret
diff --git a/recipes/bioconductor-suprahex/meta.yaml b/recipes/bioconductor-suprahex/meta.yaml
index 04eb6c4e30369..e36b5c278da3e 100644
--- a/recipes/bioconductor-suprahex/meta.yaml
+++ b/recipes/bioconductor-suprahex/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "supraHex" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8e336ff1cb8560472beba7d8ccf5a09f
+  md5: 19685808f18718a58889c70e476888d6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-suprahex", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-surfaltr/meta.yaml b/recipes/bioconductor-surfaltr/meta.yaml
index 2ed649c1aa0a6..fec35c9c96474 100644
--- a/recipes/bioconductor-surfaltr/meta.yaml
+++ b/recipes/bioconductor-surfaltr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "surfaltr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 3a4fb02609853c9949dd59b780178915
+  md5: 69ea67dd32fffa5376607fa6fa5c7e9f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-surfaltr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, devtools, kableExtra
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-msa >=1.32.0,<1.33.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-msa >=1.34.0,<1.35.0'
     - r-base
     - 'r-dplyr >=1.0.6'
     - 'r-ggplot2 >=3.3.2'
@@ -35,9 +36,9 @@ requirements:
     - 'r-testthat >=3.0.0'
     - 'r-xml2 >=1.3.2'
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-msa >=1.32.0,<1.33.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-msa >=1.34.0,<1.35.0'
     - r-base
     - 'r-dplyr >=1.0.6'
     - 'r-ggplot2 >=3.3.2'
diff --git a/recipes/bioconductor-survcomp/meta.yaml b/recipes/bioconductor-survcomp/meta.yaml
index 2f2780ca4ccff..52adadac760d3 100644
--- a/recipes/bioconductor-survcomp/meta.yaml
+++ b/recipes/bioconductor-survcomp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.50.0" %}
+{% set version = "1.52.0" %}
 {% set name = "survcomp" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: bf071254fe286a0ece30502f89c7a76a
+  md5: 5026589c50042751474d3474dc24847d
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-survcomp", max_pin="x.x") }}'
 # Suggests: Hmisc, clinfun, xtable, Biobase, BiocManager
 requirements:
   host:
diff --git a/recipes/bioconductor-survtype/meta.yaml b/recipes/bioconductor-survtype/meta.yaml
index 12039d62d24df..1d4612397856c 100644
--- a/recipes/bioconductor-survtype/meta.yaml
+++ b/recipes/bioconductor-survtype/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "survtype" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 639c5a6fcc3ff8139f8c46a3cefd2e84
+  md5: e939bd3726a715cb0a817d0541ff86ab
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-survtype", max_pin="x.x") }}'
   noarch: generic
 # Suggests: maftools, scales, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-clustvarsel
     - r-pheatmap
     - r-survival
     - r-survminer
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-clustvarsel
     - r-pheatmap
diff --git a/recipes/bioconductor-sva/meta.yaml b/recipes/bioconductor-sva/meta.yaml
index 2e4dcb6704fdf..6f654ea41dd4b 100644
--- a/recipes/bioconductor-sva/meta.yaml
+++ b/recipes/bioconductor-sva/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.48.0" %}
+{% set version = "3.50.0" %}
 {% set name = "sva" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 6a2553ec4e50d85e75a764a83b8dc74b
+  md5: 8c42cd3e23be4d24f072d98394931552
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-sva", max_pin="x.x") }}'
 # Suggests: pamr, bladderbatch, BiocStyle, zebrafishRNASeq, testthat
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-matrixstats
     - r-mgcv
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-matrixstats
     - r-mgcv
@@ -49,6 +50,8 @@ about:
   summary: 'Surrogate Variable Analysis'
   description: 'The sva package contains functions for removing batch effects and other unwanted variation in high-throughput experiment. Specifically, the sva package contains functions for the identifying and building surrogate variables for high-dimensional data sets. Surrogate variables are covariates constructed directly from high-dimensional data (like gene expression/RNA sequencing/methylation/brain imaging data) that can be used in subsequent analyses to adjust for unknown, unmodeled, or latent sources of noise. The sva package can be used to remove artifacts in three ways: (1) identifying and estimating surrogate variables for unknown sources of variation in high-throughput experiments (Leek and Storey 2007 PLoS Genetics,2008 PNAS), (2) directly removing known batch effects using ComBat (Johnson et al. 2007 Biostatistics) and (3) removing batch effects with known control probes (Leek 2014 biorXiv). Removing batch effects and using surrogate variables in differential expression analysis have been shown to reduce dependence, stabilize error rate estimates, and improve reproducibility, see (Leek and Storey 2007 PLoS Genetics, 2008 PNAS or Leek et al. 2011 Nat. Reviews Genetics).'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:sva
     - doi:10.1371/journal.pgen.0030161
diff --git a/recipes/bioconductor-svanumt/meta.yaml b/recipes/bioconductor-svanumt/meta.yaml
index 3dba97073f8ec..03b3aa0e409af 100644
--- a/recipes/bioconductor-svanumt/meta.yaml
+++ b/recipes/bioconductor-svanumt/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "svaNUMT" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,40 +11,41 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b4ce1b0c7f1224d6703e8681aa643fa4
+  md5: 1f25f8632f0e52d0826ee0b1b8a1fe28
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-svanumt", max_pin="x.x") }}'
   noarch: generic
 # Suggests: TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome.Hsapiens.UCSC.hg19, ggplot2, devtools, testthat (>= 2.1.0), roxygen2, knitr, readr, plyranges, circlize, IRanges, SummarizedExperiment, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-structuralvariantannotation >=1.16.0,<1.17.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-structuralvariantannotation >=1.18.0,<1.19.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-assertthat
     - r-base
     - r-dplyr
     - r-rlang
     - r-stringr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-structuralvariantannotation >=1.16.0,<1.17.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-structuralvariantannotation >=1.18.0,<1.19.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-assertthat
     - r-base
     - r-dplyr
diff --git a/recipes/bioconductor-svaretro/meta.yaml b/recipes/bioconductor-svaretro/meta.yaml
index b4fa14e5bae17..176e5ea539cc2 100644
--- a/recipes/bioconductor-svaretro/meta.yaml
+++ b/recipes/bioconductor-svaretro/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "svaRetro" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,40 +11,41 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b746169da6f49e96d3f4f50a2826f577
+  md5: 56da2ed056a7078a5d9f2883885d5be5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-svaretro", max_pin="x.x") }}'
   noarch: generic
 # Suggests: TxDb.Hsapiens.UCSC.hg19.knownGene, ggplot2, devtools, testthat (>= 2.1.0), roxygen2, knitr, BiocStyle, plyranges, circlize, tictoc, IRanges, stats, SummarizedExperiment, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-structuralvariantannotation >=1.16.0,<1.17.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-structuralvariantannotation >=1.18.0,<1.19.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-assertthat
     - r-base
     - r-dplyr
     - r-rlang
     - r-stringr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-structuralvariantannotation >=1.16.0,<1.17.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-structuralvariantannotation >=1.18.0,<1.19.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-assertthat
     - r-base
     - r-dplyr
diff --git a/recipes/bioconductor-svm2crmdata/meta.yaml b/recipes/bioconductor-svm2crmdata/meta.yaml
index ea67ef2e8f814..7e8ea729d45d5 100644
--- a/recipes/bioconductor-svm2crmdata/meta.yaml
+++ b/recipes/bioconductor-svm2crmdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "SVM2CRMdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e1d44ea0446ba41c2f9264ab088461e2
+  md5: ce0c6615bfbb9a5a7cf4eeab0bd6199d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-svm2crmdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-svm2crmdata/post-link.sh b/recipes/bioconductor-svm2crmdata/post-link.sh
index eb5d1751d701d..b48dec842f852 100644
--- a/recipes/bioconductor-svm2crmdata/post-link.sh
+++ b/recipes/bioconductor-svm2crmdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "svm2crmdata-1.32.0"
+installBiocDataPackage.sh "svm2crmdata-1.34.0"
diff --git a/recipes/bioconductor-svmdo/meta.yaml b/recipes/bioconductor-svmdo/meta.yaml
index 37e37aa503896..81368ffa43b1b 100644
--- a/recipes/bioconductor-svmdo/meta.yaml
+++ b/recipes/bioconductor-svmdo/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "SVMDO" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1eb944647d9a94e7d36c9c9b94f03ab4
+  md5: 3edf50ad6544537845fe263bb490b9e5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-svmdo", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat (>= 3.1.6), BiocStyle
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-bsda >=1.2.1'
     - 'r-caret >=6.0-93'
@@ -41,10 +42,10 @@ requirements:
     - 'r-sjmisc >=2.8.9'
     - 'r-survival >=3.4-0'
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-bsda >=1.2.1'
     - 'r-caret >=6.0-93'
diff --git a/recipes/bioconductor-swath2stats/meta.yaml b/recipes/bioconductor-swath2stats/meta.yaml
index 4af9facf1e894..8a7eef17ac912 100644
--- a/recipes/bioconductor-swath2stats/meta.yaml
+++ b/recipes/bioconductor-swath2stats/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.1" %}
+{% set version = "1.32.0" %}
 {% set name = "SWATH2stats" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 78daf29b8044f381022c2ffe6090c9d1
+  md5: 3853f9f81af8bc0732ff0e2ceaf43441
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-swath2stats", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
     - r-base
     - r-data.table
     - r-ggplot2
     - r-reshape2
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
     - r-base
     - r-data.table
     - r-ggplot2
diff --git a/recipes/bioconductor-swathxtend/meta.yaml b/recipes/bioconductor-swathxtend/meta.yaml
index 60b0a2a5ede76..23a30c62141a5 100644
--- a/recipes/bioconductor-swathxtend/meta.yaml
+++ b/recipes/bioconductor-swathxtend/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.22.0" %}
+{% set version = "2.24.0" %}
 {% set name = "SwathXtend" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ff355cc022731be52c04ba7c3642fbff
+  md5: 64b04f78ca92078b9ad63cee65bf012f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-swathxtend", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
diff --git a/recipes/bioconductor-swfdr/meta.yaml b/recipes/bioconductor-swfdr/meta.yaml
index 18c52df32692d..5b1503ab08784 100644
--- a/recipes/bioconductor-swfdr/meta.yaml
+++ b/recipes/bioconductor-swfdr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "swfdr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 81f7760a0a60bf0b4316d3c4331254c9
+  md5: f873820993a9785dbca1c825b291abfb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-swfdr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: dplyr, ggplot2, BiocStyle, knitr, qvalue, reshape2, rmarkdown, testthat
 requirements:
diff --git a/recipes/bioconductor-switchbox/meta.yaml b/recipes/bioconductor-switchbox/meta.yaml
index d4d07d56b234b..a1db6b69845ce 100644
--- a/recipes/bioconductor-switchbox/meta.yaml
+++ b/recipes/bioconductor-switchbox/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "switchBox" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d7459e39ae728ff2ea86be9d8b7dabe7
+  md5: 29de2be8446a4f686acf75635f1539b9
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-switchbox", max_pin="x.x") }}'
 requirements:
   host:
     - r-base
diff --git a/recipes/bioconductor-switchde/meta.yaml b/recipes/bioconductor-switchde/meta.yaml
index 34886fcb98e1f..7bd82e5a01c55 100644
--- a/recipes/bioconductor-switchde/meta.yaml
+++ b/recipes/bioconductor-switchde/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "switchde" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d51bc2a4680829c8c892a5338e9f3357
+  md5: 9017dd3162508b4412c30ae21eef9328
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-switchde", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, testthat, numDeriv, tidyr
 requirements:
   host:
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
   run:
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-synapsis/meta.yaml b/recipes/bioconductor-synapsis/meta.yaml
index f0d3daec91acd..448748a38bafa 100644
--- a/recipes/bioconductor-synapsis/meta.yaml
+++ b/recipes/bioconductor-synapsis/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "synapsis" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: e13bb0dbe8bcba4ac4dffa389ec31ed8
+  md5: 592572937da010f5fbd70fb7fc8e80d6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-synapsis", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat (>= 3.0.0), ggplot2, tidyverse, BiocStyle
 requirements:
   host:
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
     - r-base
   run:
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-synapter/meta.yaml b/recipes/bioconductor-synapter/meta.yaml
index 6f7e59fa0a2d8..74524f15fc539 100644
--- a/recipes/bioconductor-synapter/meta.yaml
+++ b/recipes/bioconductor-synapter/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.24.0" %}
+{% set version = "2.26.0" %}
 {% set name = "synapter" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 0a1b7bdc0e115bb14644630fdbb324ef
+  md5: a6c9ade32fbe35d5cb85adc0e9a5322c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-synapter", max_pin="x.x") }}'
   noarch: generic
 # Suggests: synapterdata (>= 1.13.2), xtable, testthat (>= 0.8), BRAIN, BiocStyle, knitr
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-cleaver >=1.38.0,<1.39.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-cleaver >=1.40.0,<1.41.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
     - r-lattice
     - r-rcolorbrewer
     - 'r-readr >=0.2'
     - 'r-rmarkdown >=1.0'
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-cleaver >=1.38.0,<1.39.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-cleaver >=1.40.0,<1.41.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
     - r-lattice
     - r-rcolorbrewer
diff --git a/recipes/bioconductor-synapterdata/meta.yaml b/recipes/bioconductor-synapterdata/meta.yaml
index 032f55aa8709c..a49f7875e36cd 100644
--- a/recipes/bioconductor-synapterdata/meta.yaml
+++ b/recipes/bioconductor-synapterdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "synapterdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: cfc22e448bd4d28d06535acfc93cea7b
+  md5: 255aa756f0b6c0c1d95cdfbc889a67a2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-synapterdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-synapter >=2.24.0,<2.25.0'
+    - 'bioconductor-synapter >=2.26.0,<2.27.0'
     - r-base
   run:
-    - 'bioconductor-synapter >=2.24.0,<2.25.0'
+    - 'bioconductor-synapter >=2.26.0,<2.27.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-synapterdata/post-link.sh b/recipes/bioconductor-synapterdata/post-link.sh
index 2f003cfbef0d2..a426a8749af10 100644
--- a/recipes/bioconductor-synapterdata/post-link.sh
+++ b/recipes/bioconductor-synapterdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "synapterdata-1.38.0"
+installBiocDataPackage.sh "synapterdata-1.40.0"
diff --git a/recipes/bioconductor-synaptome.data/meta.yaml b/recipes/bioconductor-synaptome.data/meta.yaml
index 43d4767182ffc..d7106934d6d10 100644
--- a/recipes/bioconductor-synaptome.data/meta.yaml
+++ b/recipes/bioconductor-synaptome.data/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.6" %}
 {% set name = "synaptome.data" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,21 +13,22 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 4388c63219782a9aa3e384fcdb51ed47
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-synaptome.data", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, RefManageR, rmarkdown, sessioninfo
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-synaptome.db/meta.yaml b/recipes/bioconductor-synaptome.db/meta.yaml
index 95ca7d6cb55e6..1ee54ad6b3834 100644
--- a/recipes/bioconductor-synaptome.db/meta.yaml
+++ b/recipes/bioconductor-synaptome.db/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.99.12" %}
+{% set version = "0.99.15" %}
 {% set name = "synaptome.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 383e2a16688e13d40d1f8e2efd3168ef
+  md5: 7ed11d61ac8dca86372eeec59b5ab03b
 build:
-  number: 1
+  number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-synaptome.db", max_pin="x.x") }}'
   noarch: generic
-# Suggests: rmarkdown, knitr, pander, testthat, devtools, markdown
+# Suggests: rmarkdown, knitr, pander, testthat, devtools, markdown, ggplot2
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
     - 'bioconductor-synaptome.data >=0.99.0,<0.100.0'
     - r-base
     - r-dbi
@@ -31,7 +32,7 @@ requirements:
     - r-rdpack
     - r-rsqlite
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
     - 'bioconductor-synaptome.data >=0.99.0,<0.100.0'
     - r-base
     - r-dbi
@@ -41,7 +42,7 @@ requirements:
     - r-rdpack
     - r-rsqlite
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-synaptome.db/post-link.sh b/recipes/bioconductor-synaptome.db/post-link.sh
index b5043fedb70cd..f2b7062f649b3 100644
--- a/recipes/bioconductor-synaptome.db/post-link.sh
+++ b/recipes/bioconductor-synaptome.db/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "synaptome.db-0.99.12"
+installBiocDataPackage.sh "synaptome.db-0.99.15"
diff --git a/recipes/bioconductor-synergyfinder/meta.yaml b/recipes/bioconductor-synergyfinder/meta.yaml
index 14e3d5a448a85..9eb18914024ce 100644
--- a/recipes/bioconductor-synergyfinder/meta.yaml
+++ b/recipes/bioconductor-synergyfinder/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.8.2" %}
+{% set version = "3.10.0" %}
 {% set name = "synergyfinder" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 6323a009044409b49239020be9cb7431
+  md5: 8b511fc821bd8e8b344a439f5c641a72
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-synergyfinder", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
diff --git a/recipes/bioconductor-synextend/meta.yaml b/recipes/bioconductor-synextend/meta.yaml
index c2ef67d7cee4d..f46ea364894f7 100644
--- a/recipes/bioconductor-synextend/meta.yaml
+++ b/recipes/bioconductor-synextend/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "SynExtend" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3e01e05a7fad5a006ee4fa765002a728
+  md5: f7ee0b985a06dbd6040329dd264648f5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-synextend", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, igraph, markdown, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-decipher >=2.28.0,<2.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-decipher >=2.30.0,<2.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-decipher >=2.28.0,<2.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-decipher >=2.30.0,<2.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-synlet/meta.yaml b/recipes/bioconductor-synlet/meta.yaml
index 06b0e3a65a979..42f0e6cfbeb87 100644
--- a/recipes/bioconductor-synlet/meta.yaml
+++ b/recipes/bioconductor-synlet/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.0.0" %}
+{% set version = "2.2.0" %}
 {% set name = "synlet" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: ca162c2dc8ffc6452cd92f618e06c010
+  md5: f56c634faaae3a0de5e46d18e6617d11
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-synlet", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, testthat, rmarkdown
 requirements:
   host:
-    - 'bioconductor-rankprod >=3.26.0,<3.27.0'
+    - 'bioconductor-rankprod >=3.28.0,<3.29.0'
     - r-base
     - r-data.table
     - r-ggplot2
@@ -29,7 +30,7 @@ requirements:
     - r-patchwork
     - r-rcolorbrewer
   run:
-    - 'bioconductor-rankprod >=3.26.0,<3.27.0'
+    - 'bioconductor-rankprod >=3.28.0,<3.29.0'
     - r-base
     - r-data.table
     - r-ggplot2
diff --git a/recipes/bioconductor-synmut/meta.yaml b/recipes/bioconductor-synmut/meta.yaml
index 2f76cc1ccdc30..e2cd14510aeba 100644
--- a/recipes/bioconductor-synmut/meta.yaml
+++ b/recipes/bioconductor-synmut/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "SynMut" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3a3be12d75414cd7bcaf19df34e812cc
+  md5: 485dd0770e2c64ad7ace9a3edf957fe8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-synmut", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocManager, knitr, rmarkdown, testthat, devtools, prettydoc, glue
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - r-seqinr
     - r-stringr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - r-seqinr
     - r-stringr
diff --git a/recipes/bioconductor-syntenet/meta.yaml b/recipes/bioconductor-syntenet/meta.yaml
index d11bda0b6b26f..58a7b99d243ea 100644
--- a/recipes/bioconductor-syntenet/meta.yaml
+++ b/recipes/bioconductor-syntenet/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.4" %}
+{% set version = "1.4.0" %}
 {% set name = "syntenet" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 81bd02bbba83fcb7f62098b5fd2a1fc6
+  md5: ab56b637f74d79cfba3dd6aab80b7ac9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-syntenet", max_pin="x.x") }}'
 # Suggests: BiocStyle, ggtree, labdsv, covr, knitr, rmarkdown, testthat (>= 3.0.0), xml2
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-ggnetwork
     - r-ggplot2
@@ -38,10 +39,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
     - r-base
     - r-ggnetwork
     - r-ggplot2
diff --git a/recipes/bioconductor-systempiper/meta.yaml b/recipes/bioconductor-systempiper/meta.yaml
index dc1a2c0c6014b..2690b4fb73a2c 100644
--- a/recipes/bioconductor-systempiper/meta.yaml
+++ b/recipes/bioconductor-systempiper/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.6.3" %}
+{% set version = "2.8.0" %}
 {% set name = "systemPipeR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5abc2d7529b19cae2029a906ab790dde
+  md5: 67456347870d6c358e1209658cb930d2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-systempiper", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, systemPipeRdata, GenomicAlignments, grid, dplyr, testthat, rjson, annotate, AnnotationDbi, kableExtra, GO.db, GenomeInfoDb, DT, rtracklayer, limma, edgeR, DESeq2, IRanges, batchtools, GenomicFeatures (>= 1.31.3), VariantAnnotation (>= 1.25.11)
 # SystemRequirements: systemPipeR can be used to run external command-line software (e.g. short read aligners), but the corresponding tool needs to be installed on a system.
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-crayon
     - r-ggplot2
@@ -37,13 +38,13 @@ requirements:
     - r-stringr
     - r-yaml
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-crayon
     - r-ggplot2
@@ -58,7 +59,7 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: Artistic-2.0
   summary: 'systemPipeR: workflow management and report generation environment'
-  description: 'systemPipeR is a generic data analysis workflow environment that unifies R with command-line tools. It enables scientists to analyze many types of large- or small-scale data on local or distributed computer systems with a high level of reproducibility, scalability and portability. At its core is a command-line interface (CLI) that adopts the Common Workflow Language (CWL). This design allows users to choose for each analysis step the optimal R or command-line software. It supports both end-to-end and partial execution of workflows with built-in restart functionalities. Efficient management of complex analysis tasks is accomplished by a flexible workflow control container class. Handling of large numbers of input samples and experimental designs is facilitated by a consistently implemented sample annotation infrastructure. As a multi-purpose workflow toolkit, systemPipeR enables users to run existing workflows, customize them or design entirely new ones while taking advantage of widely adopted data structures within the Bioconductor ecosystem. Another important core functionality is the generation of reproducible scientific analysis and technical reports. For result interpretation, systemPipeR offers a wide range of plotting functionality, while an associated Shiny App offers many useful functionalities for interactive result exploration. The vignettes linked from this page include (1) a general introduction, (2) a description of technical details, and (3) a collection of workflow templates.'
+  description: 'systemPipeR is a multipurpose data analysis workflow environment that unifies R with command-line tools. It enables scientists to analyze many types of large- or small-scale data on local or distributed computer systems with a high level of reproducibility, scalability and portability. At its core is a command-line interface (CLI) that adopts the Common Workflow Language (CWL). This design allows users to choose for each analysis step the optimal R or command-line software. It supports both end-to-end and partial execution of workflows with built-in restart functionalities. Efficient management of complex analysis tasks is accomplished by a flexible workflow control container class. Handling of large numbers of input samples and experimental designs is facilitated by consistent sample annotation mechanisms. As a multi-purpose workflow toolkit, systemPipeR enables users to run existing workflows, customize them or design entirely new ones while taking advantage of widely adopted data structures within the Bioconductor ecosystem. Another important core functionality is the generation of reproducible scientific analysis and technical reports. For result interpretation, systemPipeR offers a wide range of plotting functionality, while an associated Shiny App offers many useful functionalities for interactive result exploration. The vignettes linked from this page include (1) a general introduction, (2) a description of technical details, and (3) a collection of workflow templates.'
 extra:
   identifiers:
     - biotools:systempiper
diff --git a/recipes/bioconductor-systempiperdata/meta.yaml b/recipes/bioconductor-systempiperdata/meta.yaml
index 54390564b9f98..40deed2560a71 100644
--- a/recipes/bioconductor-systempiperdata/meta.yaml
+++ b/recipes/bioconductor-systempiperdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.4.0" %}
+{% set version = "2.6.0" %}
 {% set name = "systemPipeRdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: afa259f7cd53e2252902a48dd32df1b9
+  md5: 1af59929fb95c3a017b88fce32a4c833
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-systempiperdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures, GenomicRanges, IRanges, Rsamtools, ShortRead, rtracklayer, RUnit, BiocStyle, knitr, rmarkdown, systemPipeR
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - r-jsonlite
     - r-remotes
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - r-base
     - r-jsonlite
     - r-remotes
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-systempiperdata/post-link.sh b/recipes/bioconductor-systempiperdata/post-link.sh
index f66ddefe81cd4..5e959d6d140be 100644
--- a/recipes/bioconductor-systempiperdata/post-link.sh
+++ b/recipes/bioconductor-systempiperdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "systempiperdata-2.4.0"
+installBiocDataPackage.sh "systempiperdata-2.6.0"
diff --git a/recipes/bioconductor-systempipeshiny/meta.yaml b/recipes/bioconductor-systempipeshiny/meta.yaml
index b2a420c776120..6a0d1fa4130e8 100644
--- a/recipes/bioconductor-systempipeshiny/meta.yaml
+++ b/recipes/bioconductor-systempipeshiny/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "systemPipeShiny" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0ac48a618b74b5c41efcec02c40c6690
+  md5: 8880796c4c2bf213ffa98df7f3f8d164
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-systempipeshiny", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle, knitr, rmarkdown, systemPipeR (>= 2.2.0), systemPipeRdata (>= 2.0.0), rhandsontable, zip, callr, pushbar, fs, readr, R.utils, DESeq2, SummarizedExperiment, glmpca, pheatmap, grid, ape, Rtsne, UpSetR, tidyr, esquisse (>= 1.1.0), cicerone
 requirements:
@@ -47,7 +48,7 @@ requirements:
     - r-shinyjs
     - r-shinytoastr
     - r-shinywidgets
-    - 'r-spscomps >=0.3.2'
+    - 'r-spscomps >=0.3.3'
     - 'r-spsutil >=0.2.2'
     - r-stringr
     - r-styler
@@ -81,7 +82,7 @@ requirements:
     - r-shinyjs
     - r-shinytoastr
     - r-shinywidgets
-    - 'r-spscomps >=0.3.2'
+    - 'r-spscomps >=0.3.3'
     - 'r-spsutil >=0.2.2'
     - r-stringr
     - r-styler
diff --git a/recipes/bioconductor-systempipetools/meta.yaml b/recipes/bioconductor-systempipetools/meta.yaml
index a2aee49bccd5b..f406794a6855d 100644
--- a/recipes/bioconductor-systempipetools/meta.yaml
+++ b/recipes/bioconductor-systempipetools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "systemPipeTools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c9a22e57ab20cf5f5412adaee75b50c2
+  md5: e0f74af8b351b49c68cbfed4e9e00adc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-systempipetools", max_pin="x.x") }}'
   noarch: generic
 # Suggests: systemPipeR, knitr, BiocStyle, rmarkdown, testthat (>= 3.0.0), BiocGenerics, Biostrings, methods
 requirements:
   host:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-ape
     - r-base
     - r-dplyr
@@ -38,9 +39,9 @@ requirements:
     - r-rtsne
     - r-tibble
   run:
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-ape
     - r-base
     - r-dplyr
diff --git a/recipes/bioconductor-tabulamurisdata/meta.yaml b/recipes/bioconductor-tabulamurisdata/meta.yaml
index e2cfdf8ef3cd9..c226941259d34 100644
--- a/recipes/bioconductor-tabulamurisdata/meta.yaml
+++ b/recipes/bioconductor-tabulamurisdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "TabulaMurisData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c198946ebcce0c1e6c79c65f52a11642
+  md5: 39c27cc6646ea3bcdb4637a226b219b8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tabulamurisdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, SingleCellExperiment, scran, scater, iSEE, testthat
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-tabulamurisdata/post-link.sh b/recipes/bioconductor-tabulamurisdata/post-link.sh
index 4f3b46aad6d18..fb80612c77662 100644
--- a/recipes/bioconductor-tabulamurisdata/post-link.sh
+++ b/recipes/bioconductor-tabulamurisdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "tabulamurisdata-1.18.0"
+installBiocDataPackage.sh "tabulamurisdata-1.20.0"
diff --git a/recipes/bioconductor-tabulamurissenisdata/meta.yaml b/recipes/bioconductor-tabulamurissenisdata/meta.yaml
index 092094204d602..0a4e957526051 100644
--- a/recipes/bioconductor-tabulamurissenisdata/meta.yaml
+++ b/recipes/bioconductor-tabulamurissenisdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "TabulaMurisSenisData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c6a42dc2dc0bbabe7cfd25c91e11f050
+  md5: 6d6120b18adce70e943a3da8e0e577b2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tabulamurissenisdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ggplot2, testthat, knitr, rmarkdown, iSEE, BiocStyle
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-gdata
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-gdata
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-tabulamurissenisdata/post-link.sh b/recipes/bioconductor-tabulamurissenisdata/post-link.sh
index 8c408f1ad763f..946a2b411a203 100644
--- a/recipes/bioconductor-tabulamurissenisdata/post-link.sh
+++ b/recipes/bioconductor-tabulamurissenisdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "tabulamurissenisdata-1.6.0"
+installBiocDataPackage.sh "tabulamurissenisdata-1.8.0"
diff --git a/recipes/bioconductor-tadar/build.sh b/recipes/bioconductor-tadar/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-tadar/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-tadar/meta.yaml b/recipes/bioconductor-tadar/meta.yaml
new file mode 100644
index 0000000000000..a4d1aea0a2232
--- /dev/null
+++ b/recipes/bioconductor-tadar/meta.yaml
@@ -0,0 +1,59 @@
+{% set version = "1.0.0" %}
+{% set name = "tadar" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
+  md5: 88c91583a351bef3f3d8ca38b51c0c04
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tadar", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: BiocStyle, covr, knitr, limma, rmarkdown, testthat (>= 3.0.0), tidyverse
+requirements:
+  host:
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
+    - r-base
+    - r-ggplot2
+    - r-rlang
+  run:
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
+    - r-base
+    - r-ggplot2
+    - r-rlang
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'Transcriptome Analysis of Differential Allelic Representation'
+  description: 'This package provides functions to standardise the analysis of Differential Allelic Representation (DAR). DAR compromises the integrity of Differential Expression analysis results as it can bias expression, influencing the classification of genes (or transcripts) as being differentially expressed. DAR analysis results in an easy-to-interpret value between 0 and 1 for each genetic feature of interest, where 0 represents identical allelic representation and 1 represents complete diversity. This metric can be used to identify features prone to false-positive calls in Differential Expression analysis, and can be leveraged with statistical methods to alleviate the impact of such artefacts on RNA-seq data.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+
diff --git a/recipes/bioconductor-tadcompare/meta.yaml b/recipes/bioconductor-tadcompare/meta.yaml
index 7bde3530ca42a..db49b519eb40d 100644
--- a/recipes/bioconductor-tadcompare/meta.yaml
+++ b/recipes/bioconductor-tadcompare/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "TADCompare" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4e72268cea3f87bc16d914b4907ebcf4
+  md5: 92966a38a0c202cfe7dbd09bb83b23b1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tadcompare", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, microbenchmark, testthat, covr, pheatmap, rGREAT, SpectralTAD
 requirements:
   host:
-    - 'bioconductor-hiccompare >=1.22.0,<1.23.0'
+    - 'bioconductor-hiccompare >=1.24.0,<1.25.0'
     - r-base
     - r-cluster
     - r-cowplot
@@ -35,7 +36,7 @@ requirements:
     - r-reshape2
     - r-tidyr
   run:
-    - 'bioconductor-hiccompare >=1.22.0,<1.23.0'
+    - 'bioconductor-hiccompare >=1.24.0,<1.25.0'
     - r-base
     - r-cluster
     - r-cowplot
diff --git a/recipes/bioconductor-tanggle/meta.yaml b/recipes/bioconductor-tanggle/meta.yaml
index 695da10676f27..f1e803a007b94 100644
--- a/recipes/bioconductor-tanggle/meta.yaml
+++ b/recipes/bioconductor-tanggle/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "tanggle" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 5582a23deea9db3af347e42b327e895f
+  md5: d23bc70f7c920e00bb14a3d05e8cfdea
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tanggle", max_pin="x.x") }}'
   noarch: generic
 # Suggests: tinytest, BiocStyle, ggimage, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
     - 'r-ape >=5.0'
     - r-base
     - 'r-ggplot2 >=2.2.0'
     - 'r-phangorn >=2.5'
   run:
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
     - 'r-ape >=5.0'
     - r-base
     - 'r-ggplot2 >=2.2.0'
diff --git a/recipes/bioconductor-tapseq/meta.yaml b/recipes/bioconductor-tapseq/meta.yaml
index 112e6d082f8aa..39c94bc15447d 100644
--- a/recipes/bioconductor-tapseq/meta.yaml
+++ b/recipes/bioconductor-tapseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.1" %}
 {% set name = "TAPseq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,41 +11,42 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0acc6577f95cf45253359a38029de75a
+  md5: 423853e9c2015594d616f9315d5c217d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tapseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BSgenome.Hsapiens.UCSC.hg38, knitr, rmarkdown, ggplot2, Seurat, glmnet, cowplot, Matrix, rtracklayer, BiocStyle
 # SystemRequirements: Primer3 (>= 2.5.0), BLAST+ (>=2.6.0)
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-tidyr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-dplyr
     - r-tidyr
diff --git a/recipes/bioconductor-target/meta.yaml b/recipes/bioconductor-target/meta.yaml
index 48f960fb213e3..9a6b3f33d033d 100644
--- a/recipes/bioconductor-target/meta.yaml
+++ b/recipes/bioconductor-target/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "target" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 5d1cce236aa72d723a2b0db48f97fb88
+  md5: 96ca9fa7bed738941cd930b5e7491bc2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-target", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 2.1.0), knitr, rmarkdown, shinytest, shinyBS, covr
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-matrixstats
     - r-shiny
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-matrixstats
     - r-shiny
diff --git a/recipes/bioconductor-targetdecoy/meta.yaml b/recipes/bioconductor-targetdecoy/meta.yaml
index 6a31ddf07787a..a48d89bad2795 100644
--- a/recipes/bioconductor-targetdecoy/meta.yaml
+++ b/recipes/bioconductor-targetdecoy/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "TargetDecoy" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b5b99cde4bb8d267e2f094778feac42c
+  md5: ff49065b40e049f06bbe1ad9c74200fc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-targetdecoy", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, msdata, sessioninfo, rmarkdown, gridExtra, testthat (>= 3.0.0), covr
 requirements:
   host:
-    - 'bioconductor-mzid >=1.38.0,<1.39.0'
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
+    - 'bioconductor-mzid >=1.40.0,<1.41.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
     - r-base
     - r-ggplot2
     - r-ggpubr
     - r-miniui
     - r-shiny
   run:
-    - 'bioconductor-mzid >=1.38.0,<1.39.0'
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
+    - 'bioconductor-mzid >=1.40.0,<1.41.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
     - r-base
     - r-ggplot2
     - r-ggpubr
diff --git a/recipes/bioconductor-targetscan.hs.eg.db/meta.yaml b/recipes/bioconductor-targetscan.hs.eg.db/meta.yaml
index 3ad409739d7ea..1a5256aad3781 100644
--- a/recipes/bioconductor-targetscan.hs.eg.db/meta.yaml
+++ b/recipes/bioconductor-targetscan.hs.eg.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.6.1" %}
 {% set name = "targetscan.Hs.eg.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: d10569315400f6c1b95ad2688632b6de
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-targetscan.hs.eg.db", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-targetscan.mm.eg.db/meta.yaml b/recipes/bioconductor-targetscan.mm.eg.db/meta.yaml
index 3a214e634c698..0a4db556725a7 100644
--- a/recipes/bioconductor-targetscan.mm.eg.db/meta.yaml
+++ b/recipes/bioconductor-targetscan.mm.eg.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.6.1" %}
 {% set name = "targetscan.Mm.eg.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 1830815c9d1383739f1ff152da0508c5
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-targetscan.mm.eg.db", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-targetscore/meta.yaml b/recipes/bioconductor-targetscore/meta.yaml
index c50e4e01c9a53..b57d457d83c63 100644
--- a/recipes/bioconductor-targetscore/meta.yaml
+++ b/recipes/bioconductor-targetscore/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "TargetScore" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 11b4e6f2896e28dac5a4b08485769f2a
+  md5: 92d3b6ca138c6c3081262a758ec63766
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-targetscore", max_pin="x.x") }}'
   noarch: generic
 # Suggests: TargetScoreData, gplots, Biobase, GEOquery
 requirements:
diff --git a/recipes/bioconductor-targetscoredata/meta.yaml b/recipes/bioconductor-targetscoredata/meta.yaml
index d519bd5b385f1..2da4addce3f26 100644
--- a/recipes/bioconductor-targetscoredata/meta.yaml
+++ b/recipes/bioconductor-targetscoredata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "TargetScoreData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 63ccf68833f45d1a853a719046cf9def
+  md5: 61084f230f2c3dedb27988867f07f50f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-targetscoredata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: TargetScore, gplots
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-targetscoredata/post-link.sh b/recipes/bioconductor-targetscoredata/post-link.sh
index ffe6ca3e5bfb0..80e2477b8de59 100644
--- a/recipes/bioconductor-targetscoredata/post-link.sh
+++ b/recipes/bioconductor-targetscoredata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "targetscoredata-1.36.0"
+installBiocDataPackage.sh "targetscoredata-1.38.0"
diff --git a/recipes/bioconductor-targetsearch/meta.yaml b/recipes/bioconductor-targetsearch/meta.yaml
index a118d4918a513..c554006c9e67c 100644
--- a/recipes/bioconductor-targetsearch/meta.yaml
+++ b/recipes/bioconductor-targetsearch/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.2.0" %}
+{% set version = "2.4.1" %}
 {% set name = "TargetSearch" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f2ecd6d2c39b8705b55009a4e383dcf5
+  md5: 652009cfa3df492780c9ea45715df0b9
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-targetsearch", max_pin="x.x") }}'
 # Suggests: TargetSearchData, BiocStyle, knitr, tinytest
 requirements:
   host:
diff --git a/recipes/bioconductor-targetsearchdata/meta.yaml b/recipes/bioconductor-targetsearchdata/meta.yaml
index 91fb3650656ea..df32deec7a9b3 100644
--- a/recipes/bioconductor-targetsearchdata/meta.yaml
+++ b/recipes/bioconductor-targetsearchdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "TargetSearchData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6dd9996121d44e6f753ce68434de7aad
+  md5: 96bbec70706d8adcf4ee321261620d79
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-targetsearchdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-targetsearchdata/post-link.sh b/recipes/bioconductor-targetsearchdata/post-link.sh
index d1539a16f580a..1f74c111549e7 100644
--- a/recipes/bioconductor-targetsearchdata/post-link.sh
+++ b/recipes/bioconductor-targetsearchdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "targetsearchdata-1.38.0"
+installBiocDataPackage.sh "targetsearchdata-1.40.0"
diff --git a/recipes/bioconductor-tartare/meta.yaml b/recipes/bioconductor-tartare/meta.yaml
index 0e552a41f409a..880886341b0d0 100644
--- a/recipes/bioconductor-tartare/meta.yaml
+++ b/recipes/bioconductor-tartare/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "tartare" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 10b4601e60890e48d47840d2a4f03a22
+  md5: 869743e16f05bc962de518ca925750d8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tartare", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, tools
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-tartare/post-link.sh b/recipes/bioconductor-tartare/post-link.sh
index 41396cdf35cae..0017d5f89c426 100644
--- a/recipes/bioconductor-tartare/post-link.sh
+++ b/recipes/bioconductor-tartare/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "tartare-1.14.0"
+installBiocDataPackage.sh "tartare-1.16.0"
diff --git a/recipes/bioconductor-tbsignatureprofiler/meta.yaml b/recipes/bioconductor-tbsignatureprofiler/meta.yaml
index 14eb668a3cdfd..4ef88100aca8b 100644
--- a/recipes/bioconductor-tbsignatureprofiler/meta.yaml
+++ b/recipes/bioconductor-tbsignatureprofiler/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "TBSignatureProfiler" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a00e9d71be544060c7eda4f08ba8322e
+  md5: 1cd38948c20b0f43904a8ff204f2940d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tbsignatureprofiler", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, caret, circlize, class, covr, dplyr, e1071, glmnet, HGNChelper, impute, knitr, lintr, MASS, plyr, pROC, randomForest, rmarkdown, shiny, spelling, sva, testthat
 requirements:
   host:
-    - 'bioconductor-assign >=1.36.0,<1.37.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-gsva >=1.48.0,<1.49.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singscore >=1.20.0,<1.21.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-assign >=1.38.0,<1.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-gsva >=1.50.0,<1.51.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singscore >=1.22.0,<1.23.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dt
     - r-gdata
@@ -40,15 +41,15 @@ requirements:
     - r-rlang
     - r-rocit
   run:
-    - 'bioconductor-assign >=1.36.0,<1.37.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-gsva >=1.48.0,<1.49.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singscore >=1.20.0,<1.21.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-assign >=1.38.0,<1.39.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-gsva >=1.50.0,<1.51.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singscore >=1.22.0,<1.23.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dt
     - r-gdata
diff --git a/recipes/bioconductor-tbx20bamsubset/meta.yaml b/recipes/bioconductor-tbx20bamsubset/meta.yaml
index cb3222da9f6b5..18a9421aaee7e 100644
--- a/recipes/bioconductor-tbx20bamsubset/meta.yaml
+++ b/recipes/bioconductor-tbx20bamsubset/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "TBX20BamSubset" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5b8761f75b20b32450d6cae46dc063a9
+  md5: c158901ec6203e85569c600efb335ccf
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tbx20bamsubset", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-xtable
   run:
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-xtable
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-tbx20bamsubset/post-link.sh b/recipes/bioconductor-tbx20bamsubset/post-link.sh
index fbddcded07bfd..7c52406af39b8 100644
--- a/recipes/bioconductor-tbx20bamsubset/post-link.sh
+++ b/recipes/bioconductor-tbx20bamsubset/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "tbx20bamsubset-1.36.0"
+installBiocDataPackage.sh "tbx20bamsubset-1.38.0"
diff --git a/recipes/bioconductor-tcc/build.sh b/recipes/bioconductor-tcc/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-tcc/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-tcc/meta.yaml b/recipes/bioconductor-tcc/meta.yaml
new file mode 100644
index 0000000000000..a070ac06036b2
--- /dev/null
+++ b/recipes/bioconductor-tcc/meta.yaml
@@ -0,0 +1,45 @@
+{% set version = "1.42.0" %}
+{% set name = "TCC" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: e36a17d628a68654296227603e0678da
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tcc", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: RUnit, BiocGenerics
+requirements:
+  host:
+    - 'bioconductor-bayseq >=2.36.0,<2.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-roc >=1.78.0,<1.79.0'
+    - r-base
+  run:
+    - 'bioconductor-bayseq >=2.36.0,<2.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-roc >=1.78.0,<1.79.0'
+    - r-base
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-2
+  summary: 'TCC: Differential expression analysis for tag count data with robust normalization strategies'
+  description: 'This package provides a series of functions for performing differential expression analysis from RNA-seq count data using robust normalization strategy (called DEGES). The basic idea of DEGES is that potential differentially expressed genes or transcripts (DEGs) among compared samples should be removed before data normalization to obtain a well-ranked gene list where true DEGs are top-ranked and non-DEGs are bottom ranked. This can be done by performing a multi-step normalization strategy (called DEGES for DEG elimination strategy). A major characteristic of TCC is to provide the robust normalization methods for several kinds of count data (two-group with or without replicates, multi-group/multi-factor, and so on) by virtue of the use of combinations of functions in depended packages.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2'
+
diff --git a/recipes/bioconductor-tcgabiolinks/meta.yaml b/recipes/bioconductor-tcgabiolinks/meta.yaml
index 97ec14cf72ff7..a5d528634ec4a 100644
--- a/recipes/bioconductor-tcgabiolinks/meta.yaml
+++ b/recipes/bioconductor-tcgabiolinks/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.28.3" %}
+{% set version = "2.30.0" %}
 {% set name = "TCGAbiolinks" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ef3da29fc90f15d770fef2ae20629127
+  md5: 91536d6234ebd992dac8102393c363d0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tcgabiolinks", max_pin="x.x") }}'
   noarch: generic
 # Suggests: jpeg, png, BiocStyle, rmarkdown, devtools, maftools, parmigene, c3net, minet, dnet, Biobase, affy, testthat, sesame, AnnotationHub, ExperimentHub, pathview, clusterProfiler, Seurat, ComplexHeatmap, circlize, ConsensusClusterPlus, igraph, supraHex, limma, edgeR, sva, EDASeq, survminer, genefilter, gridExtra, survival, doParallel, parallel, ggrepel (>= 0.6.3), scales, grid
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tcgabiolinksgui.data >=1.20.0,<1.21.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tcgabiolinksgui.data >=1.22.0,<1.23.0'
     - r-base
     - r-data.table
     - 'r-downloader >=0.4'
@@ -46,12 +47,12 @@ requirements:
     - 'r-xml >=3.98.0'
     - r-xml2
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tcgabiolinksgui.data >=1.20.0,<1.21.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tcgabiolinksgui.data >=1.22.0,<1.23.0'
     - r-base
     - r-data.table
     - 'r-downloader >=0.4'
diff --git a/recipes/bioconductor-tcgabiolinksgui.data/meta.yaml b/recipes/bioconductor-tcgabiolinksgui.data/meta.yaml
index cf31353641906..a599989612e1c 100644
--- a/recipes/bioconductor-tcgabiolinksgui.data/meta.yaml
+++ b/recipes/bioconductor-tcgabiolinksgui.data/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "TCGAbiolinksGUI.data" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d0764549e842b85e9ed17bb0e27b1c54
+  md5: bd2042c0064583d666364a52ce3be17e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tcgabiolinksgui.data", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, readr, DT
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-tcgabiolinksgui.data/post-link.sh b/recipes/bioconductor-tcgabiolinksgui.data/post-link.sh
index cd1bdb8413e09..3ce61f3013f98 100644
--- a/recipes/bioconductor-tcgabiolinksgui.data/post-link.sh
+++ b/recipes/bioconductor-tcgabiolinksgui.data/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "tcgabiolinksgui.data-1.20.0"
+installBiocDataPackage.sh "tcgabiolinksgui.data-1.22.0"
diff --git a/recipes/bioconductor-tcgacrcmirna/meta.yaml b/recipes/bioconductor-tcgacrcmirna/meta.yaml
index 77c92d198b9ee..d5aa585eae22e 100644
--- a/recipes/bioconductor-tcgacrcmirna/meta.yaml
+++ b/recipes/bioconductor-tcgacrcmirna/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "TCGAcrcmiRNA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a286cf4adf594bccf4910c3445e2901c
+  md5: 451d09b5ec341d7e92211a1d42c35947
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tcgacrcmirna", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-tcgacrcmirna/post-link.sh b/recipes/bioconductor-tcgacrcmirna/post-link.sh
index 5a4a98bea980a..8c432e9a0c322 100644
--- a/recipes/bioconductor-tcgacrcmirna/post-link.sh
+++ b/recipes/bioconductor-tcgacrcmirna/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "tcgacrcmirna-1.20.0"
+installBiocDataPackage.sh "tcgacrcmirna-1.22.0"
diff --git a/recipes/bioconductor-tcgacrcmrna/meta.yaml b/recipes/bioconductor-tcgacrcmrna/meta.yaml
index f8b1e5d7b7be0..e4c24ff6fed90 100644
--- a/recipes/bioconductor-tcgacrcmrna/meta.yaml
+++ b/recipes/bioconductor-tcgacrcmrna/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "TCGAcrcmRNA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d3f199714f9dba5ed0838af4e6646c7e
+  md5: bb9300e6ad6e4e5435a31487fdc22ed6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tcgacrcmrna", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-tcgacrcmrna/post-link.sh b/recipes/bioconductor-tcgacrcmrna/post-link.sh
index 5efda522e33cd..53b5ac1ad6709 100644
--- a/recipes/bioconductor-tcgacrcmrna/post-link.sh
+++ b/recipes/bioconductor-tcgacrcmrna/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "tcgacrcmrna-1.20.0"
+installBiocDataPackage.sh "tcgacrcmrna-1.22.0"
diff --git a/recipes/bioconductor-tcgamethylation450k/meta.yaml b/recipes/bioconductor-tcgamethylation450k/meta.yaml
index 3bb05d8e97048..521516a508d02 100644
--- a/recipes/bioconductor-tcgamethylation450k/meta.yaml
+++ b/recipes/bioconductor-tcgamethylation450k/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "TCGAMethylation450k" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5d230a3e839f3ac33e404453c46dfa4f
+  md5: e913aa3b85d5cd1d0b27a346daf8c9ee
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tcgamethylation450k", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-tcgamethylation450k/post-link.sh b/recipes/bioconductor-tcgamethylation450k/post-link.sh
index da7290bd32706..7b0a1b521a206 100644
--- a/recipes/bioconductor-tcgamethylation450k/post-link.sh
+++ b/recipes/bioconductor-tcgamethylation450k/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "tcgamethylation450k-1.36.0"
+installBiocDataPackage.sh "tcgamethylation450k-1.38.0"
diff --git a/recipes/bioconductor-tcgautils/meta.yaml b/recipes/bioconductor-tcgautils/meta.yaml
index 946c3853a6883..472458d809d70 100644
--- a/recipes/bioconductor-tcgautils/meta.yaml
+++ b/recipes/bioconductor-tcgautils/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.2" %}
+{% set version = "1.22.0" %}
 {% set name = "TCGAutils" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,43 +11,46 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 61dc029c8eecfc34d14907b19d396360
+  md5: 33d917253a210382a92537383bb4ee4f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tcgautils", max_pin="x.x") }}'
   noarch: generic
-# Suggests: AnnotationHub, BiocFileCache, BiocStyle, curatedTCGAData, ComplexHeatmap, devtools, dplyr, httr, IlluminaHumanMethylation450kanno.ilmn12.hg19, impute, knitr, magrittr, mirbase.db, org.Hs.eg.db, RColorBrewer, readr, rmarkdown, RTCGAToolbox (>= 2.17.4), rtracklayer, R.utils, testthat, TxDb.Hsapiens.UCSC.hg18.knownGene, TxDb.Hsapiens.UCSC.hg19.knownGene
+# Suggests: AnnotationHub, BiocStyle, curatedTCGAData, ComplexHeatmap, devtools, dplyr, httr, IlluminaHumanMethylation450kanno.ilmn12.hg19, impute, knitr, magrittr, mirbase.db, org.Hs.eg.db, RColorBrewer, readr, rmarkdown, RTCGAToolbox (>= 2.17.4), rtracklayer, R.utils, testthat, TxDb.Hsapiens.UCSC.hg18.knownGene, TxDb.Hsapiens.UCSC.hg19.knownGene
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicdatacommons >=1.24.0,<1.25.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-raggedexperiment >=1.24.0,<1.25.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocbaseutils >=1.4.0,<1.5.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicdatacommons >=1.26.0,<1.27.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-raggedexperiment >=1.26.0,<1.27.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-rvest
     - r-stringr
     - r-xml2
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicdatacommons >=1.24.0,<1.25.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-raggedexperiment >=1.24.0,<1.25.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocbaseutils >=1.4.0,<1.5.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicdatacommons >=1.26.0,<1.27.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-raggedexperiment >=1.26.0,<1.27.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-rvest
     - r-stringr
diff --git a/recipes/bioconductor-tcgaworkflowdata/meta.yaml b/recipes/bioconductor-tcgaworkflowdata/meta.yaml
index 4401e938f7cc9..8987d3058c1b2 100644
--- a/recipes/bioconductor-tcgaworkflowdata/meta.yaml
+++ b/recipes/bioconductor-tcgaworkflowdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "TCGAWorkflowData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 12be13d34d28928864db32c639257777
+  md5: cbba498f1922aeedadf96a1911a81751
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tcgaworkflowdata", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr, rmarkdown, pander, testthat
+# Suggests: knitr, rmarkdown, pander, testthat, BiocStyle
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-tcgaworkflowdata/post-link.sh b/recipes/bioconductor-tcgaworkflowdata/post-link.sh
index 66078bdc1c486..1f5635c08afec 100644
--- a/recipes/bioconductor-tcgaworkflowdata/post-link.sh
+++ b/recipes/bioconductor-tcgaworkflowdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "tcgaworkflowdata-1.24.0"
+installBiocDataPackage.sh "tcgaworkflowdata-1.26.0"
diff --git a/recipes/bioconductor-tcseq/meta.yaml b/recipes/bioconductor-tcseq/meta.yaml
index bd5393e7d4a55..59a57399ee0d5 100644
--- a/recipes/bioconductor-tcseq/meta.yaml
+++ b/recipes/bioconductor-tcseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.23.0" %}
+{% set version = "1.26.0" %}
 {% set name = "TCseq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0bd128ed62aa6f6d75ea1083747b9f60
+  md5: f5b63a6d1b40c82f8ddc86cc2abdb89b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tcseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cluster
     - r-e1071
@@ -35,13 +36,13 @@ requirements:
     - r-locfit
     - r-reshape2
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cluster
     - r-e1071
@@ -55,6 +56,6 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: 'GPL (>= 2)'
   summary: 'Time course sequencing data analysis'
-  description: 'Quantitative and differential analysis of epigenomic and transcriptomic time course sequencing data, clustering analysis and visualization of temporal patterns of time course data.'
+  description: 'Quantitative and differential analysis of epigenomic and transcriptomic time course sequencing data, clustering analysis and visualization of the temporal patterns of time course data.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
diff --git a/recipes/bioconductor-tdbasedufe/meta.yaml b/recipes/bioconductor-tdbasedufe/meta.yaml
index 0cc6b899026b0..52baeee1720db 100644
--- a/recipes/bioconductor-tdbasedufe/meta.yaml
+++ b/recipes/bioconductor-tdbasedufe/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "TDbasedUFE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b1e0064920f4edfe8d052c3db37c7b2f
+  md5: 5557e1128d1d6ffab09670bf90b8947c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tdbasedufe", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-mofadata >=1.16.0,<1.17.0'
-    - 'bioconductor-tximport >=1.28.0,<1.29.0'
-    - 'bioconductor-tximportdata >=1.28.0,<1.29.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-mofadata >=1.18.0,<1.19.0'
+    - 'bioconductor-tximport >=1.30.0,<1.31.0'
+    - 'bioconductor-tximportdata >=1.30.0,<1.31.0'
     - r-base
     - r-readr
     - r-rtensor
     - r-shiny
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-mofadata >=1.16.0,<1.17.0'
-    - 'bioconductor-tximport >=1.28.0,<1.29.0'
-    - 'bioconductor-tximportdata >=1.28.0,<1.29.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-mofadata >=1.18.0,<1.19.0'
+    - 'bioconductor-tximport >=1.30.0,<1.31.0'
+    - 'bioconductor-tximportdata >=1.30.0,<1.31.0'
     - r-base
     - r-readr
     - r-rtensor
diff --git a/recipes/bioconductor-tdbasedufeadv/meta.yaml b/recipes/bioconductor-tdbasedufeadv/meta.yaml
index 9cc8358eef686..3ec6ded747c03 100644
--- a/recipes/bioconductor-tdbasedufeadv/meta.yaml
+++ b/recipes/bioconductor-tdbasedufeadv/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "TDbasedUFEadv" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3f2dc73b489be0993668b18e618fbb3d
+  md5: 6f873403b62f756c6b8424cfeb2409c9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tdbasedufeadv", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat (>= 3.0.0), RTCGA.rnaseq, RTCGA.clinical, BiocStyle, MOFAdata
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-enrichplot >=1.20.0,<1.21.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtcga >=1.30.0,<1.31.0'
-    - 'bioconductor-stringdb >=2.12.0,<2.13.0'
-    - 'bioconductor-tdbasedufe >=1.0.0,<1.1.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-enrichplot >=1.22.0,<1.23.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtcga >=1.32.0,<1.33.0'
+    - 'bioconductor-stringdb >=2.14.0,<2.15.0'
+    - 'bioconductor-tdbasedufe >=1.2.0,<1.3.0'
     - r-base
     - r-enrichr
     - r-hash
     - r-rtensor
     - r-shiny
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-dose >=3.26.0,<3.27.0'
-    - 'bioconductor-enrichplot >=1.20.0,<1.21.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rtcga >=1.30.0,<1.31.0'
-    - 'bioconductor-stringdb >=2.12.0,<2.13.0'
-    - 'bioconductor-tdbasedufe >=1.0.0,<1.1.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-dose >=3.28.0,<3.29.0'
+    - 'bioconductor-enrichplot >=1.22.0,<1.23.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rtcga >=1.32.0,<1.33.0'
+    - 'bioconductor-stringdb >=2.14.0,<2.15.0'
+    - 'bioconductor-tdbasedufe >=1.2.0,<1.3.0'
     - r-base
     - r-enrichr
     - r-hash
diff --git a/recipes/bioconductor-tekrabber/meta.yaml b/recipes/bioconductor-tekrabber/meta.yaml
index 4e1051f1e4808..14842af5d7cd6 100644
--- a/recipes/bioconductor-tekrabber/meta.yaml
+++ b/recipes/bioconductor-tekrabber/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "TEKRABber" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 20b586d92efd367abd9c29d48d4fb9c7
+  md5: 145026d8a5e02ec94f8a2a1f5405851e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
-# Suggests: BiocStyle, ggpubr, rmarkdown, shiny, knitr, testthat (>= 3.0.0)
+  run_exports: '{{ pin_subpackage("bioconductor-tekrabber", max_pin="x.x") }}'
+# Suggests: BiocStyle, bslib, ggplot2, ggpubr, plotly, rmarkdown, shiny, knitr, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-apeglm >=1.22.0,<1.23.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-scbn >=1.18.0,<1.19.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-apeglm >=1.24.0,<1.25.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-scbn >=1.20.0,<1.21.0'
     - r-base
     - r-dplyr
     - r-magrittr
@@ -32,11 +32,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-apeglm >=1.22.0,<1.23.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-scbn >=1.18.0,<1.19.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-apeglm >=1.24.0,<1.25.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-scbn >=1.20.0,<1.21.0'
     - r-base
     - r-dplyr
     - r-magrittr
@@ -50,8 +49,8 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'GPL (>= 2)'
+  license: 'LGPL (>=3)'
   summary: 'An R package estimates the correlations of orthologs and transposable elements between two species'
   description: 'TEKRABber is made to provide a user-friendly pipeline for comparing orthologs and transposable elements (TEs) between two species. It considers the orthology confidence between two species from BioMart to normalize expression counts and detect differentially expressed orthologs/TEs. Then it provides one to one correlation analysis for desired orthologs and TEs. There is also an app function to have a first insight on the result. Users can prepare orthologs/TEs RNA-seq expression data by their own preference to run TEKRABber following the data structure mentioned in the vignettes.'
-  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/LGPL-3'
 
diff --git a/recipes/bioconductor-tenxbraindata/meta.yaml b/recipes/bioconductor-tenxbraindata/meta.yaml
index db75aa07a19f1..58bd199e51f1a 100644
--- a/recipes/bioconductor-tenxbraindata/meta.yaml
+++ b/recipes/bioconductor-tenxbraindata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "TENxBrainData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 74f64ec6654482787dcdc4d6edf085c0
+  md5: 1fa1b93ab8d144b860c83dc5741490a0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tenxbraindata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle, snow, BiocFileCache, BiocParallel, data.table, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-tenxbraindata/post-link.sh b/recipes/bioconductor-tenxbraindata/post-link.sh
index a8864917b11ce..5358e416f4cff 100644
--- a/recipes/bioconductor-tenxbraindata/post-link.sh
+++ b/recipes/bioconductor-tenxbraindata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "tenxbraindata-1.20.0"
+installBiocDataPackage.sh "tenxbraindata-1.22.0"
diff --git a/recipes/bioconductor-tenxbusdata/meta.yaml b/recipes/bioconductor-tenxbusdata/meta.yaml
index 6460871ebb1bd..6b7ec47703e37 100644
--- a/recipes/bioconductor-tenxbusdata/meta.yaml
+++ b/recipes/bioconductor-tenxbusdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "TENxBUSData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0ef9324a12e6e70e28a16def5f6e8f8f
+  md5: 35be2bd3c806b055fc9463e8f135dd32
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tenxbusdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-tenxbusdata/post-link.sh b/recipes/bioconductor-tenxbusdata/post-link.sh
index 097377fc14852..dc2ed75ffb6a5 100644
--- a/recipes/bioconductor-tenxbusdata/post-link.sh
+++ b/recipes/bioconductor-tenxbusdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "tenxbusdata-1.14.0"
+installBiocDataPackage.sh "tenxbusdata-1.16.0"
diff --git a/recipes/bioconductor-tenxio/meta.yaml b/recipes/bioconductor-tenxio/meta.yaml
index 3b6ee3533653c..d48c1bc5f0f43 100644
--- a/recipes/bioconductor-tenxio/meta.yaml
+++ b/recipes/bioconductor-tenxio/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "TENxIO" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,40 +11,41 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 156715deb84301cc0c1deaf2bea74a59
+  md5: 98a845f55877d89b82b9a153fe54a41f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tenxio", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, DropletTestFiles, ExperimentHub, HDF5Array, knitr, RaggedExperiment, rhdf5, rmarkdown, Rsamtools, tinytest
 requirements:
   host:
-    - 'bioconductor-biocbaseutils >=1.2.0,<1.3.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocio >=1.10.0,<1.11.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocbaseutils >=1.4.0,<1.5.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocio >=1.12.0,<1.13.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - r-r.utils
     - r-rcurl
     - r-readr
   run:
-    - 'bioconductor-biocbaseutils >=1.2.0,<1.3.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocio >=1.10.0,<1.11.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocbaseutils >=1.4.0,<1.5.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocio >=1.12.0,<1.13.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - r-r.utils
diff --git a/recipes/bioconductor-tenxpbmcdata/meta.yaml b/recipes/bioconductor-tenxpbmcdata/meta.yaml
index 0663453a17cb5..7b29159a6f5b5 100644
--- a/recipes/bioconductor-tenxpbmcdata/meta.yaml
+++ b/recipes/bioconductor-tenxpbmcdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "TENxPBMCData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6902ddadd45f76cce7e73228ed4bdcaf
+  md5: 3e6c961a01998667f37de542858dbc09
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tenxpbmcdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, knitr, BiocStyle, snow, BiocFileCache, BiocParallel
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-tenxpbmcdata/post-link.sh b/recipes/bioconductor-tenxpbmcdata/post-link.sh
index 21c88cd40324e..eb9fbb18d674f 100644
--- a/recipes/bioconductor-tenxpbmcdata/post-link.sh
+++ b/recipes/bioconductor-tenxpbmcdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "tenxpbmcdata-1.18.0"
+installBiocDataPackage.sh "tenxpbmcdata-1.20.0"
diff --git a/recipes/bioconductor-tenxplore/meta.yaml b/recipes/bioconductor-tenxplore/meta.yaml
index cc37d8d989d1f..f2c5019b0eebf 100644
--- a/recipes/bioconductor-tenxplore/meta.yaml
+++ b/recipes/bioconductor-tenxplore/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "tenXplore" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 96c18d808ccb0106111ce4bf1d00ec5c
+  md5: 13e1778f8b644661a521bb832af6e7d6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tenxplore", max_pin="x.x") }}'
   noarch: generic
 # Suggests: org.Hs.eg.db, testthat, knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-ontoproc >=1.22.0,<1.23.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-restfulse >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-ontoproc >=1.24.0,<1.25.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-restfulse >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrixstats
     - r-shiny
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-ontoproc >=1.22.0,<1.23.0'
-    - 'bioconductor-org.mm.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-restfulse >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-ontoproc >=1.24.0,<1.25.0'
+    - 'bioconductor-org.mm.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-restfulse >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrixstats
     - r-shiny
diff --git a/recipes/bioconductor-tenxvisiumdata/meta.yaml b/recipes/bioconductor-tenxvisiumdata/meta.yaml
index 449adeb44e95b..6c8051114d57a 100644
--- a/recipes/bioconductor-tenxvisiumdata/meta.yaml
+++ b/recipes/bioconductor-tenxvisiumdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "TENxVisiumData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cd391f3b1849f658578a44cfe2aec13b
+  md5: f578add429847efff027a61b1749b9b4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tenxvisiumdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-tenxvisiumdata/post-link.sh b/recipes/bioconductor-tenxvisiumdata/post-link.sh
index 2d628409ccf36..1921065bf2398 100644
--- a/recipes/bioconductor-tenxvisiumdata/post-link.sh
+++ b/recipes/bioconductor-tenxvisiumdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "tenxvisiumdata-1.8.0"
+installBiocDataPackage.sh "tenxvisiumdata-1.10.0"
diff --git a/recipes/bioconductor-teqc/meta.yaml b/recipes/bioconductor-teqc/meta.yaml
index a85b72af6bb87..062c2e16d092a 100644
--- a/recipes/bioconductor-teqc/meta.yaml
+++ b/recipes/bioconductor-teqc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "4.22.0" %}
+{% set version = "4.24.0" %}
 {% set name = "TEQC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1972bf594cded1f47f9fe7d9e6c9e2a0
+  md5: 02976837ccda44f13a0a43b9de17ea81
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-teqc", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-hwriter
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-hwriter
 test:
diff --git a/recipes/bioconductor-ternarynet/meta.yaml b/recipes/bioconductor-ternarynet/meta.yaml
index 629108221b0ee..bd39c481f7479 100644
--- a/recipes/bioconductor-ternarynet/meta.yaml
+++ b/recipes/bioconductor-ternarynet/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.44.0" %}
+{% set version = "1.46.0" %}
 {% set name = "ternarynet" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 1aa77c1b9619ead34f9b06e00d761028
+  md5: 1ee0ac867354eedf8cf756d94be52589
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ternarynet", max_pin="x.x") }}'
 # Suggests: testthat
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-igraph
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
     - r-base
     - r-igraph
   build:
diff --git a/recipes/bioconductor-terratcgadata/meta.yaml b/recipes/bioconductor-terratcgadata/meta.yaml
index 2cf2e42ef005b..d5498e1fc2f25 100644
--- a/recipes/bioconductor-terratcgadata/meta.yaml
+++ b/recipes/bioconductor-terratcgadata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "terraTCGAdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,36 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fceb4c4282a26c126a6b91f30c130904
+  md5: b5803a78627bbe874b8cd8ae0a147979
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-terratcgadata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, withr, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-anvil >=1.12.0,<1.13.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-raggedexperiment >=1.24.0,<1.25.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-tcgautils >=1.20.0,<1.21.0'
+    - 'bioconductor-anvil >=1.14.0,<1.15.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-raggedexperiment >=1.26.0,<1.27.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-tcgautils >=1.22.0,<1.23.0'
     - r-base
     - r-dplyr
     - r-readr
     - r-tidyr
   run:
-    - 'bioconductor-anvil >=1.12.0,<1.13.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-raggedexperiment >=1.24.0,<1.25.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-tcgautils >=1.20.0,<1.21.0'
+    - 'bioconductor-anvil >=1.14.0,<1.15.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-raggedexperiment >=1.26.0,<1.27.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-tcgautils >=1.22.0,<1.23.0'
     - r-base
     - r-dplyr
     - r-readr
diff --git a/recipes/bioconductor-test1cdf/meta.yaml b/recipes/bioconductor-test1cdf/meta.yaml
index a2679d123c71d..9cf00a9e907da 100644
--- a/recipes/bioconductor-test1cdf/meta.yaml
+++ b/recipes/bioconductor-test1cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "test1cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 8c94708b49ccc7bbf127485155970b9b
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-test1cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-test2cdf/meta.yaml b/recipes/bioconductor-test2cdf/meta.yaml
index 4ac7f876c924e..74ae9fa6eb04c 100644
--- a/recipes/bioconductor-test2cdf/meta.yaml
+++ b/recipes/bioconductor-test2cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "test2cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 0d1c20d6450dfc83d62214be9dc46b5f
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-test2cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-test3cdf/meta.yaml b/recipes/bioconductor-test3cdf/meta.yaml
index 9316b144dff78..4f62a9f138b91 100644
--- a/recipes/bioconductor-test3cdf/meta.yaml
+++ b/recipes/bioconductor-test3cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "test3cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 9904e7fa6599f68400a9b77d0caa159a
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-test3cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-test3probe/meta.yaml b/recipes/bioconductor-test3probe/meta.yaml
index 06620f2d8c54c..4cf7c7451737f 100644
--- a/recipes/bioconductor-test3probe/meta.yaml
+++ b/recipes/bioconductor-test3probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "test3probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: ffcbfee4e5c486fd03b2b9b64820340c
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-test3probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-tfarm/meta.yaml b/recipes/bioconductor-tfarm/meta.yaml
index 05573723829ec..f68855b990209 100644
--- a/recipes/bioconductor-tfarm/meta.yaml
+++ b/recipes/bioconductor-tfarm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "TFARM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c8cd4be3928a6737c36ae2a17d8d52d3
+  md5: bf2876d47da6baa42642dc5492ef7a94
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tfarm", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, plyr
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-arules
     - r-base
     - r-fields
     - r-gplots
     - r-stringr
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-arules
     - r-base
     - r-fields
diff --git a/recipes/bioconductor-tfbstools/meta.yaml b/recipes/bioconductor-tfbstools/meta.yaml
index 21998ea8662db..73200d3f9cb99 100644
--- a/recipes/bioconductor-tfbstools/meta.yaml
+++ b/recipes/bioconductor-tfbstools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "TFBSTools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d0973f29eb2d02f3bbcdf438e79b6414
+  md5: f2395c8153c4820e3cebb53a9eda94d6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tfbstools", max_pin="x.x") }}'
 # Suggests: BiocStyle(>= 1.7.7), JASPAR2014(>= 1.4.0), knitr(>= 1.11), testthat, JASPAR2016(>= 1.0.0), JASPAR2018(>= 1.0.0), rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-cner >=1.36.0,<1.37.0'
-    - 'bioconductor-dirichletmultinomial >=1.42.0,<1.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-seqlogo >=1.66.0,<1.67.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-cner >=1.38.0,<1.39.0'
+    - 'bioconductor-dirichletmultinomial >=1.44.0,<1.45.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-seqlogo >=1.68.0,<1.69.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - 'r-catools >=1.17.1'
     - 'r-dbi >=0.6'
@@ -44,20 +45,20 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-cner >=1.36.0,<1.37.0'
-    - 'bioconductor-dirichletmultinomial >=1.42.0,<1.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-seqlogo >=1.66.0,<1.67.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-cner >=1.38.0,<1.39.0'
+    - 'bioconductor-dirichletmultinomial >=1.44.0,<1.45.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-seqlogo >=1.68.0,<1.69.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - 'r-catools >=1.17.1'
     - 'r-dbi >=0.6'
diff --git a/recipes/bioconductor-tfea.chip/meta.yaml b/recipes/bioconductor-tfea.chip/meta.yaml
index b3dc30610b2c9..de5695cd80ca7 100644
--- a/recipes/bioconductor-tfea.chip/meta.yaml
+++ b/recipes/bioconductor-tfea.chip/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "TFEA.ChIP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9c3bebfd9a9424c0585ba6351e1ebfca
+  md5: 86f7ae5bb16ceaf9fbdc01d0cc606c42
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tfea.chip", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, S4Vectors, plotly, scales, tidyr, ggplot2, DESeq2, BiocGenerics, ggrepel, rcompanion, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - r-dplyr
     - r-r.utils
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - r-dplyr
     - r-r.utils
diff --git a/recipes/bioconductor-tfhaz/meta.yaml b/recipes/bioconductor-tfhaz/meta.yaml
index 95a094ff1d190..62729c28422f7 100644
--- a/recipes/bioconductor-tfhaz/meta.yaml
+++ b/recipes/bioconductor-tfhaz/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "TFHAZ" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c80ec5e4711cc07bf27ff180942cc78c
+  md5: 4befbb77bb7eb52b220a2472010cab25
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tfhaz", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-orfik >=1.20.0,<1.21.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-orfik >=1.22.0,<1.23.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-orfik >=1.20.0,<1.21.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-orfik >=1.22.0,<1.23.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-tfutils/meta.yaml b/recipes/bioconductor-tfutils/meta.yaml
index c5d9167c87b4c..e81f9833f5aea 100644
--- a/recipes/bioconductor-tfutils/meta.yaml
+++ b/recipes/bioconductor-tfutils/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "TFutils" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f91497509b64adadcb5babf7a2cc2f86
+  md5: a2e83bbaafa0e47d7dbbd17385bd15fb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tfutils", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, data.table, testthat, AnnotationFilter, Biobase, GenomicFeatures, GenomicRanges, Gviz, IRanges, S4Vectors, EnsDb.Hsapiens.v75, BiocParallel, BiocStyle, GO.db, GenomicFiles, GenomeInfoDb, SummarizedExperiment, UpSetR, ggplot2, png, gwascat, MotifDb, motifStack, RColorBrewer, rmarkdown
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-dplyr
     - r-dt
@@ -36,11 +37,11 @@ requirements:
     - r-rjson
     - r-shiny
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
     - r-base
     - r-dplyr
     - r-dt
diff --git a/recipes/bioconductor-tidybulk/meta.yaml b/recipes/bioconductor-tidybulk/meta.yaml
index 0840813a280b1..af300d3308e74 100644
--- a/recipes/bioconductor-tidybulk/meta.yaml
+++ b/recipes/bioconductor-tidybulk/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.2" %}
 {% set name = "tidybulk" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: bdaa13b16dbafba7b0bbcc13ff4d810f
+  md5: e1a43f9392049059ec6b67930277df16
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tidybulk", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BiocStyle, testthat, vctrs, AnnotationDbi, BiocManager, Rsubread, e1071, edgeR, limma, org.Hs.eg.db, org.Mm.eg.db, sva, GGally, knitr, qpdf, covr, Seurat, KernSmooth, Rtsne, ggplot2, widyr, clusterProfiler, msigdbr, DESeq2, broom, survival, boot, betareg, tidyHeatmap, pasilla, ggrepel, devtools, functional, survminer, tidySummarizedExperiment, markdown, uwot, matrixStats, igraph, EGSEA
+# Suggests: BiocStyle, testthat, vctrs, AnnotationDbi, BiocManager, Rsubread, e1071, edgeR, limma, org.Hs.eg.db, org.Mm.eg.db, sva, GGally, knitr, qpdf, covr, Seurat, KernSmooth, Rtsne, ggplot2, widyr, clusterProfiler, msigdbr, DESeq2, broom, survival, boot, betareg, tidyHeatmap, pasilla, ggrepel, devtools, functional, survminer, tidySummarizedExperiment, markdown, uwot, matrixStats, igraph, EGSEA, IRanges, here, glmmSeq, pbapply, pbmcapply, lme4, glmmTMB, MASS
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-crayon
-    - r-dplyr
+    - 'r-dplyr >=1.1.0'
     - r-lifecycle
     - r-magrittr
+    - r-matrix
     - r-purrr
     - r-readr
     - r-rlang
@@ -39,16 +41,18 @@ requirements:
     - r-tibble
     - r-tidyr
     - r-tidyselect
+    - 'r-ttservice >=0.3.6'
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-crayon
-    - r-dplyr
+    - 'r-dplyr >=1.1.0'
     - r-lifecycle
     - r-magrittr
+    - r-matrix
     - r-purrr
     - r-readr
     - r-rlang
@@ -58,6 +62,7 @@ requirements:
     - r-tibble
     - r-tidyr
     - r-tidyselect
+    - 'r-ttservice >=0.3.6'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-tidysinglecellexperiment/meta.yaml b/recipes/bioconductor-tidysinglecellexperiment/meta.yaml
index b73d09371bcbe..e37d659138088 100644
--- a/recipes/bioconductor-tidysinglecellexperiment/meta.yaml
+++ b/recipes/bioconductor-tidysinglecellexperiment/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "tidySingleCellExperiment" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6cf2a2b42418731f758bce9df31de473
+  md5: 4f0e61cb23c56df988e1a731a452eb2d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tidysinglecellexperiment", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BiocStyle, testthat, knitr, markdown, SingleCellSignalR, SingleR, scater, scran, tidyHeatmap, igraph, GGally, uwot, celldex, dittoSeq, EnsDb.Hsapiens.v86
+# Suggests: BiocStyle, testthat, knitr, rmarkdown, SingleCellSignalR, SingleR, scater, scran, tidyHeatmap, igraph, GGally, uwot, celldex, dittoSeq
 requirements:
   host:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cli
     - r-dplyr
@@ -34,6 +35,7 @@ requirements:
     - r-magrittr
     - r-matrix
     - r-pillar
+    - r-pkgconfig
     - r-plotly
     - r-purrr
     - r-rlang
@@ -41,12 +43,12 @@ requirements:
     - r-tibble
     - r-tidyr
     - r-tidyselect
-    - r-ttservice
+    - 'r-ttservice >=0.3.8'
     - r-vctrs
   run:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cli
     - r-dplyr
@@ -57,6 +59,7 @@ requirements:
     - r-magrittr
     - r-matrix
     - r-pillar
+    - r-pkgconfig
     - r-plotly
     - r-purrr
     - r-rlang
@@ -64,7 +67,7 @@ requirements:
     - r-tibble
     - r-tidyr
     - r-tidyselect
-    - r-ttservice
+    - 'r-ttservice >=0.3.8'
     - r-vctrs
 test:
   commands:
@@ -73,6 +76,6 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: GPL-3
   summary: 'Brings SingleCellExperiment to the Tidyverse'
-  description: 'tidySingleCellExperiment is an adapter that abstracts the ''SingleCellExperiment'' container in the form of a tibble and allows the data manipulation, plotting and nesting using ''tidyverse''.'
+  description: '''tidySingleCellExperiment'' is an adapter that abstracts the ''SingleCellExperiment'' container in the form of a ''tibble''. This allows *tidy* data manipulation, nesting, and plotting. For example, a ''tidySingleCellExperiment'' is directly compatible with functions from ''tidyverse'' packages `dplyr` and `tidyr`, as well as plotting with `ggplot2` and `plotly`. In addition, the package provides various utility functions specific to single-cell omics data analysis (e.g., aggregation of cell-level data to pseudobulks).'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
diff --git a/recipes/bioconductor-tidysummarizedexperiment/meta.yaml b/recipes/bioconductor-tidysummarizedexperiment/meta.yaml
index 9f720354b8f60..e1c10a2c75d43 100644
--- a/recipes/bioconductor-tidysummarizedexperiment/meta.yaml
+++ b/recipes/bioconductor-tidysummarizedexperiment/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "tidySummarizedExperiment" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4776d530e2487d78c6b502823d963c48
+  md5: a7962f90a1d5e582e22a5c6e1f5e46da
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tidysummarizedexperiment", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, testthat, knitr, markdown
 requirements:
   host:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cli
     - r-dplyr
@@ -32,6 +33,7 @@ requirements:
     - r-lifecycle
     - r-magrittr
     - r-pillar
+    - r-pkgconfig
     - r-plotly
     - r-purrr
     - r-rlang
@@ -39,10 +41,11 @@ requirements:
     - 'r-tibble >=3.0.4'
     - r-tidyr
     - r-tidyselect
+    - r-ttservice
     - r-vctrs
   run:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cli
     - r-dplyr
@@ -52,6 +55,7 @@ requirements:
     - r-lifecycle
     - r-magrittr
     - r-pillar
+    - r-pkgconfig
     - r-plotly
     - r-purrr
     - r-rlang
@@ -59,6 +63,7 @@ requirements:
     - 'r-tibble >=3.0.4'
     - r-tidyr
     - r-tidyselect
+    - r-ttservice
     - r-vctrs
 test:
   commands:
@@ -67,6 +72,6 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: GPL-3
   summary: 'Brings SummarizedExperiment to the Tidyverse'
-  description: 'tidySummarizedExperiment is an adapter that abstracts the ''SummarizedExperiment'' container in the form of tibble and allows the data manipulation, plotting and nesting using ''tidyverse'''
+  description: 'The tidySummarizedExperiment package provides a set of tools for creating and manipulating tidy data representations of SummarizedExperiment objects. SummarizedExperiment is a widely used data structure in bioinformatics for storing high-throughput genomic data, such as gene expression or DNA sequencing data. The tidySummarizedExperiment package introduces a tidy framework for working with SummarizedExperiment objects. It allows users to convert their data into a tidy format, where each observation is a row and each variable is a column. This tidy representation simplifies data manipulation, integration with other tidyverse packages, and enables seamless integration with the broader ecosystem of tidy tools for data analysis.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
diff --git a/recipes/bioconductor-tigre/meta.yaml b/recipes/bioconductor-tigre/meta.yaml
index eae63f5c1f1ff..3d755d26318d8 100644
--- a/recipes/bioconductor-tigre/meta.yaml
+++ b/recipes/bioconductor-tigre/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.54.0" %}
+{% set version = "1.56.0" %}
 {% set name = "tigre" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 0edc8e7589fc2380307610089d22178c
+  md5: d6bc46b9552c8c910c05c2ab705710d0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tigre", max_pin="x.x") }}'
 # Suggests: drosgenome1.db, puma, lumi, BiocStyle, BiocManager
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-dbi
     - r-gplots
@@ -31,10 +32,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-dbi
     - r-gplots
diff --git a/recipes/bioconductor-tiledbarray/meta.yaml b/recipes/bioconductor-tiledbarray/meta.yaml
index 2db05e47c4179..64c48ae9123a5 100644
--- a/recipes/bioconductor-tiledbarray/meta.yaml
+++ b/recipes/bioconductor-tiledbarray/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "TileDBArray" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a54b516115c12a5cec2574c0b383f1a0
+  md5: 7bb6ef67d882031ac2ebfcb3c1873dd2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tiledbarray", max_pin="x.x") }}'
 # Suggests: knitr, Matrix, rmarkdown, BiocStyle, BiocParallel, testthat
 requirements:
   host:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-rcpp
     - r-tiledb
     - libblas
     - liblapack
   run:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-rcpp
     - r-tiledb
diff --git a/recipes/bioconductor-tilingarray/meta.yaml b/recipes/bioconductor-tilingarray/meta.yaml
index f34d6ad123d96..1cc59e0adddee 100644
--- a/recipes/bioconductor-tilingarray/meta.yaml
+++ b/recipes/bioconductor-tilingarray/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.78.0" %}
+{% set version = "1.80.0" %}
 {% set name = "tilingArray" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3dad60f0e34a7b8edec674e76ef7373c
+  md5: ef9c26009f7990175b320386fcfeeb5c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tilingarray", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-base
     - r-pixmap
     - r-rcolorbrewer
@@ -30,10 +31,10 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-base
     - r-pixmap
     - r-rcolorbrewer
diff --git a/recipes/bioconductor-timecourse/meta.yaml b/recipes/bioconductor-timecourse/meta.yaml
index 58f5c9575973b..dac5e6130e637 100644
--- a/recipes/bioconductor-timecourse/meta.yaml
+++ b/recipes/bioconductor-timecourse/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "timecourse" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: feb399cff346d2361c9a1c47cc0df9e4
+  md5: 4a760d4bcf875bb5c0069cbef4a1af32
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-timecourse", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
     - r-mass
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
     - r-mass
 test:
diff --git a/recipes/bioconductor-timecoursedata/meta.yaml b/recipes/bioconductor-timecoursedata/meta.yaml
index c162f817abc10..96f0a9f45922b 100644
--- a/recipes/bioconductor-timecoursedata/meta.yaml
+++ b/recipes/bioconductor-timecoursedata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "timecoursedata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 7f2ad9b14757098a934109a0597a630b
+  md5: a5b9f962c12d69003eff9b6949d2b0af
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-timecoursedata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 1.0.0), knitr, rmarkdown, markdown, covr, BiocStyle
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-timecoursedata/post-link.sh b/recipes/bioconductor-timecoursedata/post-link.sh
index b36c8fe9fe8cd..4e773c67621b2 100644
--- a/recipes/bioconductor-timecoursedata/post-link.sh
+++ b/recipes/bioconductor-timecoursedata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "timecoursedata-1.10.0"
+installBiocDataPackage.sh "timecoursedata-1.12.0"
diff --git a/recipes/bioconductor-timeomics/meta.yaml b/recipes/bioconductor-timeomics/meta.yaml
index 79e6e5b19eaef..9c8c950e0f52f 100644
--- a/recipes/bioconductor-timeomics/meta.yaml
+++ b/recipes/bioconductor-timeomics/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "timeOmics" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: cd8990e7f9a92ec1208b598bc7091c37
+  md5: ddea6709cf6d8d977b998f458e7938fb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-timeomics", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, snow, tidyverse, igraph, gplots
 requirements:
   host:
-    - 'bioconductor-mixomics >=6.24.0,<6.25.0'
+    - 'bioconductor-mixomics >=6.26.0,<6.27.0'
     - r-base
     - r-dplyr
     - r-ggplot2
@@ -34,7 +35,7 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-mixomics >=6.24.0,<6.25.0'
+    - 'bioconductor-mixomics >=6.26.0,<6.27.0'
     - r-base
     - r-dplyr
     - r-ggplot2
diff --git a/recipes/bioconductor-timerquant/meta.yaml b/recipes/bioconductor-timerquant/meta.yaml
index 219c222b5396a..1a46726437cd3 100644
--- a/recipes/bioconductor-timerquant/meta.yaml
+++ b/recipes/bioconductor-timerquant/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "TimerQuant" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8cbdff0672ae0d06372f36e5de1dc86c
+  md5: 7033d0ae9a0731af8bafecbbfa5398c8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-timerquant", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, reshape2, knitr, shinyBS
 requirements:
@@ -37,7 +38,7 @@ requirements:
     - r-locfit
     - r-shiny
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-timerquant/post-link.sh b/recipes/bioconductor-timerquant/post-link.sh
index 89a811d4052cc..c834f2b1641a0 100644
--- a/recipes/bioconductor-timerquant/post-link.sh
+++ b/recipes/bioconductor-timerquant/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "timerquant-1.30.0"
+installBiocDataPackage.sh "timerquant-1.32.0"
diff --git a/recipes/bioconductor-timescape/meta.yaml b/recipes/bioconductor-timescape/meta.yaml
index 4efb191116023..2b92ef17d1383 100644
--- a/recipes/bioconductor-timescape/meta.yaml
+++ b/recipes/bioconductor-timescape/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "timescape" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 3ed14459b64d92e1cb55934105941db0
+  md5: 1a409bde946cb8ed4c7e8e6a334158de
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-timescape", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
diff --git a/recipes/bioconductor-timirgen/meta.yaml b/recipes/bioconductor-timirgen/meta.yaml
index 41a7f31ddd10d..4e6c7b1d5d457 100644
--- a/recipes/bioconductor-timirgen/meta.yaml
+++ b/recipes/bioconductor-timirgen/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.11.0" %}
 {% set name = "TimiRGeN" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a5b8016f4edda9b0a5b863ce86204b98
+  md5: 87bc148544059ef1b52ff839557d8a48
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-timirgen", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocManager, kableExtra, knitr (>= 1.27), org.Hs.eg.db, org.Mm.eg.db, testthat, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-mfuzz >=2.60.0,<2.61.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-rcy3 >=2.20.0,<2.21.0'
-    - 'bioconductor-rwikipathways >=1.20.0,<1.21.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-mfuzz >=2.62.0,<2.63.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-rcy3 >=2.22.0,<2.23.0'
+    - 'bioconductor-rwikipathways >=1.22.0,<1.23.0'
     - r-base
     - 'r-dplyr >=0.8.4'
     - r-freqprof
@@ -42,12 +43,12 @@ requirements:
     - 'r-stringr >=1.4.0'
     - 'r-tidyr >=1.0.2'
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-clusterprofiler >=4.8.0,<4.9.0'
-    - 'bioconductor-mfuzz >=2.60.0,<2.61.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-rcy3 >=2.20.0,<2.21.0'
-    - 'bioconductor-rwikipathways >=1.20.0,<1.21.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-clusterprofiler >=4.10.0,<4.11.0'
+    - 'bioconductor-mfuzz >=2.62.0,<2.63.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-rcy3 >=2.22.0,<2.23.0'
+    - 'bioconductor-rwikipathways >=1.22.0,<1.23.0'
     - r-base
     - 'r-dplyr >=0.8.4'
     - r-freqprof
diff --git a/recipes/bioconductor-tin/meta.yaml b/recipes/bioconductor-tin/meta.yaml
index 83630014fdd92..1acc38ee9a11d 100644
--- a/recipes/bioconductor-tin/meta.yaml
+++ b/recipes/bioconductor-tin/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "TIN" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5693eb6bc1804b53b77dc4a3d58b14fb
+  md5: 33dbf5f6f5fada307f20f5a9b8d6f8a8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tin", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, aroma.light, affxparser, RUnit, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
     - r-aroma.affymetrix
     - r-base
     - r-data.table
@@ -29,7 +30,7 @@ requirements:
     - r-stringr
     - r-wgcna
   run:
-    - 'bioconductor-impute >=1.74.0,<1.75.0'
+    - 'bioconductor-impute >=1.76.0,<1.77.0'
     - r-aroma.affymetrix
     - r-base
     - r-data.table
diff --git a/recipes/bioconductor-tinesath1cdf/meta.yaml b/recipes/bioconductor-tinesath1cdf/meta.yaml
index cf5445ee14152..73e31ef2a3a0c 100644
--- a/recipes/bioconductor-tinesath1cdf/meta.yaml
+++ b/recipes/bioconductor-tinesath1cdf/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "tinesath1cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 9e3235aa047fc3dc7d77437a0afa5b71
+  md5: a58177f0ed4976f52370b35e13818ce3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tinesath1cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-tinesath1cdf/post-link.sh b/recipes/bioconductor-tinesath1cdf/post-link.sh
index 5e3512aab7972..12e58ab694e6c 100644
--- a/recipes/bioconductor-tinesath1cdf/post-link.sh
+++ b/recipes/bioconductor-tinesath1cdf/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "tinesath1cdf-1.38.0"
+installBiocDataPackage.sh "tinesath1cdf-1.40.0"
diff --git a/recipes/bioconductor-tinesath1probe/meta.yaml b/recipes/bioconductor-tinesath1probe/meta.yaml
index 894c1271e9b65..6f2f2c78341f2 100644
--- a/recipes/bioconductor-tinesath1probe/meta.yaml
+++ b/recipes/bioconductor-tinesath1probe/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "tinesath1probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d3dc0686f2651dff52a201923e73a751
+  md5: abd9396a4f17a0044018702394b62933
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tinesath1probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-tinesath1probe/post-link.sh b/recipes/bioconductor-tinesath1probe/post-link.sh
index 116840a9029b2..1e35a8d90f622 100644
--- a/recipes/bioconductor-tinesath1probe/post-link.sh
+++ b/recipes/bioconductor-tinesath1probe/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "tinesath1probe-1.38.0"
+installBiocDataPackage.sh "tinesath1probe-1.40.0"
diff --git a/recipes/bioconductor-tissueenrich/meta.yaml b/recipes/bioconductor-tissueenrich/meta.yaml
index e5835cf899280..e98619fb7169a 100644
--- a/recipes/bioconductor-tissueenrich/meta.yaml
+++ b/recipes/bioconductor-tissueenrich/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "TissueEnrich" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 25b74b3d262fc3ccd8aded6ad6cc24c5
+  md5: 5cc00925f523a6d82b216343e7f4b81a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tissueenrich", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-dplyr >=0.7.3'
     - 'r-ensurer >=1.1.0'
     - 'r-ggplot2 >=2.2.1'
     - 'r-tidyr >=0.8.0'
   run:
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-dplyr >=0.7.3'
     - 'r-ensurer >=1.1.0'
diff --git a/recipes/bioconductor-tissuetreg/meta.yaml b/recipes/bioconductor-tissuetreg/meta.yaml
index c8c75229a235e..78f702a37065e 100644
--- a/recipes/bioconductor-tissuetreg/meta.yaml
+++ b/recipes/bioconductor-tissuetreg/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "tissueTreg" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9755c73b171a371afea8927b7d229a78
+  md5: 5d975c08b7a19af832c4468ecb04c58b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tissuetreg", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BiocStyle, knitr, rmarkdown, testthat, ExperimentHub, bsseq, SummarizedExperiment
+# Suggests: BiocStyle, knitr, rmarkdown, testthat, ExperimentHub, bsseq, SummarizedExperiment, ggplot2, reshape2
 requirements:
   host:
     - r-base
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-tissuetreg/post-link.sh b/recipes/bioconductor-tissuetreg/post-link.sh
index 332df6472065a..407a1fd8a9db4 100644
--- a/recipes/bioconductor-tissuetreg/post-link.sh
+++ b/recipes/bioconductor-tissuetreg/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "tissuetreg-1.20.0"
+installBiocDataPackage.sh "tissuetreg-1.22.0"
diff --git a/recipes/bioconductor-titancna/meta.yaml b/recipes/bioconductor-titancna/meta.yaml
index 3265c545f77b7..05bd29c21bf16 100644
--- a/recipes/bioconductor-titancna/meta.yaml
+++ b/recipes/bioconductor-titancna/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "TitanCNA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9048b13844f8aa903f158f087e6199d5
+  md5: ce40de587ae35a22c583019e6a85dbc6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-titancna", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - 'r-data.table >=1.10.4'
     - 'r-dplyr >=0.5.0'
@@ -31,11 +32,11 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - 'r-data.table >=1.10.4'
     - 'r-dplyr >=0.5.0'
diff --git a/recipes/bioconductor-tkwidgets/meta.yaml b/recipes/bioconductor-tkwidgets/meta.yaml
index ddd9322e0b027..81145b1f4f180 100644
--- a/recipes/bioconductor-tkwidgets/meta.yaml
+++ b/recipes/bioconductor-tkwidgets/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.78.0" %}
+{% set version = "1.80.0" %}
 {% set name = "tkWidgets" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6b031940a2ac5599748b67348cc0c693
+  md5: 044f7f3666426cbac3929eb9af1ce9d8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tkwidgets", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biobase, hgu95av2
 requirements:
   host:
-    - 'bioconductor-dyndoc >=1.78.0,<1.79.0'
-    - 'bioconductor-widgettools >=1.78.0,<1.79.0'
+    - 'bioconductor-dyndoc >=1.80.0,<1.81.0'
+    - 'bioconductor-widgettools >=1.80.0,<1.81.0'
     - r-base
   run:
-    - 'bioconductor-dyndoc >=1.78.0,<1.79.0'
-    - 'bioconductor-widgettools >=1.78.0,<1.79.0'
+    - 'bioconductor-dyndoc >=1.80.0,<1.81.0'
+    - 'bioconductor-widgettools >=1.80.0,<1.81.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-tloh/meta.yaml b/recipes/bioconductor-tloh/meta.yaml
index abd9163085ee3..72917842a802d 100644
--- a/recipes/bioconductor-tloh/meta.yaml
+++ b/recipes/bioconductor-tloh/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "tLOH" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e6bea4dcf39c695fb5bc82f9be70e166
+  md5: 1693fc28c2855f1af11159ec1051e2df
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tloh", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-bestnormalize
     - r-data.table
@@ -35,9 +36,9 @@ requirements:
     - r-scales
     - r-stringr
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-bestnormalize
     - r-data.table
diff --git a/recipes/bioconductor-tmexplorer/meta.yaml b/recipes/bioconductor-tmexplorer/meta.yaml
index b009d57e535b4..016c668957311 100644
--- a/recipes/bioconductor-tmexplorer/meta.yaml
+++ b/recipes/bioconductor-tmexplorer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "TMExplorer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 14411a5488789b44b63a2bc2b88cf33e
+  md5: 48b11be99739e61f54d9b442af739d49
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tmexplorer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - r-matrix
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-base
     - r-matrix
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-tmexplorer/post-link.sh b/recipes/bioconductor-tmexplorer/post-link.sh
index 5c6491ca754e0..7bb935ca65385 100644
--- a/recipes/bioconductor-tmexplorer/post-link.sh
+++ b/recipes/bioconductor-tmexplorer/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "tmexplorer-1.10.0"
+installBiocDataPackage.sh "tmexplorer-1.12.0"
diff --git a/recipes/bioconductor-tmixclust/meta.yaml b/recipes/bioconductor-tmixclust/meta.yaml
index 5ab363076bb68..4542db2ccca41 100644
--- a/recipes/bioconductor-tmixclust/meta.yaml
+++ b/recipes/bioconductor-tmixclust/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "TMixClust" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 94b58831f2ce8e936e4c048369ce0bd6
+  md5: 3e0e6852e806722f305ed45332c23179
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tmixclust", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, knitr, BiocStyle, testthat
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-spem >=1.40.0,<1.41.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-spem >=1.42.0,<1.43.0'
     - r-base
     - r-cluster
     - r-flexclust
@@ -31,9 +32,9 @@ requirements:
     - r-mvtnorm
     - r-zoo
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-spem >=1.40.0,<1.41.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-spem >=1.42.0,<1.43.0'
     - r-base
     - r-cluster
     - r-flexclust
diff --git a/recipes/bioconductor-tnbc.cms/meta.yaml b/recipes/bioconductor-tnbc.cms/meta.yaml
index 9a94c2592fff3..30db981ea98a1 100644
--- a/recipes/bioconductor-tnbc.cms/meta.yaml
+++ b/recipes/bioconductor-tnbc.cms/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "TNBC.CMS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 46d15e4ca09ee831aff446cf62da575e
+  md5: a0cf09eed274d5cd812076d4f000e1bb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tnbc.cms", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr
 requirements:
   host:
-    - 'bioconductor-gsva >=1.48.0,<1.49.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-gsva >=1.50.0,<1.51.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-e1071
     - r-forestplot
@@ -36,8 +37,8 @@ requirements:
     - r-rcolorbrewer
     - r-survival
   run:
-    - 'bioconductor-gsva >=1.48.0,<1.49.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-gsva >=1.50.0,<1.51.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-e1071
     - r-forestplot
diff --git a/recipes/bioconductor-tnt/meta.yaml b/recipes/bioconductor-tnt/meta.yaml
index 371856141ba03..eb73b9746ce6e 100644
--- a/recipes/bioconductor-tnt/meta.yaml
+++ b/recipes/bioconductor-tnt/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "TnT" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,32 +11,33 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e47b8605d300517fe691c3b8dc6c4124
+  md5: 1afe4c0018eb0c5026c72dcfe2120045
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tnt", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures, shiny, BiocManager, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-htmlwidgets
     - r-jsonlite
     - r-knitr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-htmlwidgets
diff --git a/recipes/bioconductor-toast/meta.yaml b/recipes/bioconductor-toast/meta.yaml
index 8b3d92d6d7d5b..45a9580d13cd1 100644
--- a/recipes/bioconductor-toast/meta.yaml
+++ b/recipes/bioconductor-toast/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "TOAST" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 43fb520992045f40b5a505dcc9f20468
+  md5: 7161d25bca2e95e8f83aea1f7d0bba6d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-toast", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, gplots, matrixStats, Matrix
 requirements:
   host:
-    - 'bioconductor-epidish >=2.16.0,<2.17.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-epidish >=2.18.0,<2.19.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-corpcor
     - r-doparallel
@@ -33,9 +34,9 @@ requirements:
     - r-quadprog
     - r-tidyr
   run:
-    - 'bioconductor-epidish >=2.16.0,<2.17.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-epidish >=2.18.0,<2.19.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-corpcor
     - r-doparallel
diff --git a/recipes/bioconductor-tofsimsdata/meta.yaml b/recipes/bioconductor-tofsimsdata/meta.yaml
index 9e04978e4694b..d77787901bee4 100644
--- a/recipes/bioconductor-tofsimsdata/meta.yaml
+++ b/recipes/bioconductor-tofsimsdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "tofsimsData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5eccad99f9e3cdfb3813eb1243926142
+  md5: 57fe35de7b03ee4f3ca07540949a6b5e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tofsimsdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, tools
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-tofsimsdata/post-link.sh b/recipes/bioconductor-tofsimsdata/post-link.sh
index 4d3ff1631bd37..2165ad029b1c3 100644
--- a/recipes/bioconductor-tofsimsdata/post-link.sh
+++ b/recipes/bioconductor-tofsimsdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "tofsimsdata-1.28.0"
+installBiocDataPackage.sh "tofsimsdata-1.30.0"
diff --git a/recipes/bioconductor-tomatocdf/meta.yaml b/recipes/bioconductor-tomatocdf/meta.yaml
index d6de1c8b55b55..18ad431e15afa 100644
--- a/recipes/bioconductor-tomatocdf/meta.yaml
+++ b/recipes/bioconductor-tomatocdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "tomatocdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 200efc0637788d4bd3263fc9183c1aa6
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tomatocdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-tomatoprobe/meta.yaml b/recipes/bioconductor-tomatoprobe/meta.yaml
index b8621403ff105..da018906e552d 100644
--- a/recipes/bioconductor-tomatoprobe/meta.yaml
+++ b/recipes/bioconductor-tomatoprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "tomatoprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 72020469f35c19399fd0be9eaffd8e77
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tomatoprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-tomoda/meta.yaml b/recipes/bioconductor-tomoda/meta.yaml
index 5dc661aa786e3..ef22967e0bd24 100644
--- a/recipes/bioconductor-tomoda/meta.yaml
+++ b/recipes/bioconductor-tomoda/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "tomoda" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 9f15c43bd46119d2474f1224994e00b5
+  md5: 49b8009bc1e0c7c7567b75be6fbde6c4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tomoda", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, testthat
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-ggrepel
@@ -30,7 +31,7 @@ requirements:
     - r-rtsne
     - r-umap
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-ggrepel
diff --git a/recipes/bioconductor-tomoseqr/meta.yaml b/recipes/bioconductor-tomoseqr/meta.yaml
index 6d4c07423adc0..10dee3d515805 100644
--- a/recipes/bioconductor-tomoseqr/meta.yaml
+++ b/recipes/bioconductor-tomoseqr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "tomoseqr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: abd0e85f5aaac89d5b86bd41a929b5df
+  md5: b881e4b272396cc4696d840658ec0ef5
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tomoseqr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, knitr, BiocStyle, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
     - r-animation
     - r-base
     - r-dplyr
@@ -33,7 +34,7 @@ requirements:
     - r-stringr
     - r-tibble
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
     - r-animation
     - r-base
     - r-dplyr
diff --git a/recipes/bioconductor-top/meta.yaml b/recipes/bioconductor-top/meta.yaml
index 2feec788acdb4..47810af59cec0 100644
--- a/recipes/bioconductor-top/meta.yaml
+++ b/recipes/bioconductor-top/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.0" %}
+{% set version = "1.2.0" %}
 {% set name = "TOP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 67cf959128704d96b21c8f04c0b94a2a
+  md5: af6712369d58630bdcc2b05d7dc06b52
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-top", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, Biobase, curatedOvarianData, ggbeeswarm, ggsci, survminer, tidyverse
 requirements:
   host:
-    - 'bioconductor-classifyr >=3.4.0,<3.5.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-classifyr >=3.6.0,<3.7.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-assertthat
     - r-base
     - r-caret
@@ -50,8 +51,8 @@ requirements:
     - r-tidygraph
     - r-tidyr
   run:
-    - 'bioconductor-classifyr >=3.4.0,<3.5.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-classifyr >=3.6.0,<3.7.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-assertthat
     - r-base
     - r-caret
diff --git a/recipes/bioconductor-topconfects/meta.yaml b/recipes/bioconductor-topconfects/meta.yaml
index 9d70091f33ace..eb8e8b3ac1e1d 100644
--- a/recipes/bioconductor-topconfects/meta.yaml
+++ b/recipes/bioconductor-topconfects/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "topconfects" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 30084c826e12d985bd00e1f4722ed54c
+  md5: 222a043b78c72f00d0dee0d6658d9284
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-topconfects", max_pin="x.x") }}'
   noarch: generic
 # Suggests: limma, edgeR, statmod, DESeq2, ashr, NBPSeq, dplyr, testthat, reshape2, tidyr, readr, org.At.tair.db, AnnotationDbi, knitr, rmarkdown, BiocStyle
 requirements:
diff --git a/recipes/bioconductor-topdownr/meta.yaml b/recipes/bioconductor-topdownr/meta.yaml
index b7c363a52e8f7..ae46358e6c952 100644
--- a/recipes/bioconductor-topdownr/meta.yaml
+++ b/recipes/bioconductor-topdownr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "topdownr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 51f610645fd9c00ef8b2719f9c16c476
+  md5: 9aa08f9983d77f0794cd1cce6c1b8085
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-topdownr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: topdownrdata (>= 0.2), knitr, rmarkdown, ranger, testthat, BiocStyle, xml2
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-ggplot2 >=2.2.1'
     - 'r-matrix >=1.4-2'
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-ggplot2 >=2.2.1'
     - 'r-matrix >=1.4-2'
diff --git a/recipes/bioconductor-topdownrdata/meta.yaml b/recipes/bioconductor-topdownrdata/meta.yaml
index 6a7ed7f87e303..fd7e915295c84 100644
--- a/recipes/bioconductor-topdownrdata/meta.yaml
+++ b/recipes/bioconductor-topdownrdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "topdownrdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c105c5a497f0270c574b757c55eea433
+  md5: 28e746b858956bea0967344bfe363e7d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-topdownrdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-topdownr >=1.22.0,<1.23.0'
+    - 'bioconductor-topdownr >=1.24.0,<1.25.0'
     - r-base
   run:
-    - 'bioconductor-topdownr >=1.22.0,<1.23.0'
+    - 'bioconductor-topdownr >=1.24.0,<1.25.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-topdownrdata/post-link.sh b/recipes/bioconductor-topdownrdata/post-link.sh
index 59251b5778340..b9614922d0e2b 100644
--- a/recipes/bioconductor-topdownrdata/post-link.sh
+++ b/recipes/bioconductor-topdownrdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "topdownrdata-1.22.0"
+installBiocDataPackage.sh "topdownrdata-1.24.0"
diff --git a/recipes/bioconductor-topgo/meta.yaml b/recipes/bioconductor-topgo/meta.yaml
index 1671a148aacec..1f934d3e45795 100644
--- a/recipes/bioconductor-topgo/meta.yaml
+++ b/recipes/bioconductor-topgo/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.52.0" %}
+{% set version = "2.54.0" %}
 {% set name = "topGO" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,32 +11,33 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ca3c35559129d3dac81b5bbea27f1334
+  md5: 62aeda25dfb89dfd466ddc749e52a422
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-topgo", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ALL, hgu95av2.db, hgu133a.db, genefilter, xtable, multtest, Rgraphviz, globaltest
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-dbi
     - r-lattice
     - r-matrixstats
     - 'r-sparsem >=0.73'
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - r-dbi
     - r-lattice
diff --git a/recipes/bioconductor-toxicogx/meta.yaml b/recipes/bioconductor-toxicogx/meta.yaml
index 0c75eea26690c..94042954f8fd5 100644
--- a/recipes/bioconductor-toxicogx/meta.yaml
+++ b/recipes/bioconductor-toxicogx/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.4.0" %}
+{% set version = "2.6.0" %}
 {% set name = "ToxicoGx" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6d6a576970e3646d89131996935da8c6
+  md5: 2be22f48c0e155c94f9af6e6157a0333
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-toxicogx", max_pin="x.x") }}'
   noarch: generic
 # Suggests: rmarkdown, testthat, BiocStyle, knitr, tinytex, devtools, PharmacoGx, xtable, markdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-coregx >=2.4.0,<2.5.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-coregx >=2.6.0,<2.7.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - r-catools
@@ -42,13 +43,13 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-coregx >=2.4.0,<2.5.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-coregx >=2.6.0,<2.7.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-assertthat
     - r-base
     - r-catools
diff --git a/recipes/bioconductor-tpp/meta.yaml b/recipes/bioconductor-tpp/meta.yaml
index 09ee0e38eb63d..573be703abd26 100644
--- a/recipes/bioconductor-tpp/meta.yaml
+++ b/recipes/bioconductor-tpp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.28.0" %}
+{% set version = "3.30.0" %}
 {% set name = "TPP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c1a08b79403e297acb280cf185a5855b
+  md5: 4a0ea50f7969045d710d3bfef371af62
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tpp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, testthat
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biobroom >=1.32.0,<1.33.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biobroom >=1.34.0,<1.35.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-broom
     - r-data.table
@@ -51,9 +52,9 @@ requirements:
     - r-venndiagram
     - r-vgam
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biobroom >=1.32.0,<1.33.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biobroom >=1.34.0,<1.35.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-broom
     - r-data.table
diff --git a/recipes/bioconductor-tpp2d/meta.yaml b/recipes/bioconductor-tpp2d/meta.yaml
index 906db98ec1583..c7c16fb5161cc 100644
--- a/recipes/bioconductor-tpp2d/meta.yaml
+++ b/recipes/bioconductor-tpp2d/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "TPP2D" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c0319843d11772fdf950a5da576a4396
+  md5: b10330822e1c629c04c568ab155b4ee1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tpp2d", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-doparallel
     - r-dplyr
@@ -34,8 +35,8 @@ requirements:
     - r-stringr
     - r-tidyr
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-doparallel
     - r-dplyr
diff --git a/recipes/bioconductor-tracktables/meta.yaml b/recipes/bioconductor-tracktables/meta.yaml
index b1b396afebb77..58b77cb8dd7a6 100644
--- a/recipes/bioconductor-tracktables/meta.yaml
+++ b/recipes/bioconductor-tracktables/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "tracktables" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: fddfa8e48265ccc4fa82c31e9a028457
+  md5: 0726840a7d7c0252dc163cfe065cefa0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tracktables", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, BiocStyle
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-rcolorbrewer
     - r-stringr
     - r-tractor.base
     - r-xml
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-rcolorbrewer
     - r-stringr
diff --git a/recipes/bioconductor-trackviewer/meta.yaml b/recipes/bioconductor-trackviewer/meta.yaml
index 9e959ab78163d..fa2657452ff77 100644
--- a/recipes/bioconductor-trackviewer/meta.yaml
+++ b/recipes/bioconductor-trackviewer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.2" %}
+{% set version = "1.38.1" %}
 {% set name = "trackViewer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a0be10d11abe74066bbfc8bd026c998a
+  md5: c0004e0bdb49b5d051e486f73a79a245
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-trackviewer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: biomaRt, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit, org.Hs.eg.db, BiocStyle, knitr, VariantAnnotation, httr, htmltools, rmarkdown, motifStack
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-grimport
     - r-htmlwidgets
@@ -43,21 +44,21 @@ requirements:
     - r-scales
     - r-strawr
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-interactionset >=1.28.0,<1.29.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
-    - 'bioconductor-rhdf5 >=2.44.0,<2.45.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-grimport
     - r-htmlwidgets
diff --git a/recipes/bioconductor-tradeseq/meta.yaml b/recipes/bioconductor-tradeseq/meta.yaml
index 1775b5406d426..cc3a8829e413c 100644
--- a/recipes/bioconductor-tradeseq/meta.yaml
+++ b/recipes/bioconductor-tradeseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "tradeSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0bc724474103ac1b4f2f70e1bc65cda7
+  md5: 5de25ecb5472b592837cd3937ff467c7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tradeseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, covr, clusterExperiment, DelayedMatrixStats
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-slingshot >=2.8.0,<2.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-trajectoryutils >=1.8.0,<1.9.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-slingshot >=2.10.0,<2.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-trajectoryutils >=1.10.0,<1.11.0'
     - r-base
     - r-ggplot2
     - r-igraph
@@ -43,14 +44,14 @@ requirements:
     - r-tibble
     - r-viridis
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-slingshot >=2.8.0,<2.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-trajectoryutils >=1.8.0,<1.9.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-slingshot >=2.10.0,<2.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-trajectoryutils >=1.10.0,<1.11.0'
     - r-base
     - r-ggplot2
     - r-igraph
diff --git a/recipes/bioconductor-trajectorygeometry/meta.yaml b/recipes/bioconductor-trajectorygeometry/meta.yaml
index abd4de676597e..b8e7e01e6f772 100644
--- a/recipes/bioconductor-trajectorygeometry/meta.yaml
+++ b/recipes/bioconductor-trajectorygeometry/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "TrajectoryGeometry" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 75158a6b92d1dc27580a4b7fd7ee6df1
+  md5: a955410c20ec9cbae97e2d60a8c9b46f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-trajectorygeometry", max_pin="x.x") }}'
   noarch: generic
 # Suggests: dplyr, knitr, RColorBrewer, rmarkdown
 requirements:
diff --git a/recipes/bioconductor-trajectoryutils/meta.yaml b/recipes/bioconductor-trajectoryutils/meta.yaml
index dbac9c6191216..b5d17afac2d84 100644
--- a/recipes/bioconductor-trajectoryutils/meta.yaml
+++ b/recipes/bioconductor-trajectoryutils/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "TrajectoryUtils" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 14277b55869f2bf8089e8608826b8f62
+  md5: 8d29813e2befc86d418f15a3e594f37b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-trajectoryutils", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocNeighbors, DelayedArray, DelayedMatrixStats, BiocParallel, testthat, knitr, BiocStyle, rmarkdown
 requirements:
   host:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-igraph
     - r-matrix
   run:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-igraph
     - r-matrix
diff --git a/recipes/bioconductor-transcriptogramer/meta.yaml b/recipes/bioconductor-transcriptogramer/meta.yaml
index 44fed3619f14a..987323d84bf10 100644
--- a/recipes/bioconductor-transcriptogramer/meta.yaml
+++ b/recipes/bioconductor-transcriptogramer/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "transcriptogramer" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 98ed3dbfd9f93632f97f126df7db63cb
+  md5: 6c6b8c13ec29ef0e6e5552cbbd49f14d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-transcriptogramer", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics
 # SystemRequirements: Java Runtime Environment (>= 6)
 requirements:
   host:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-reder >=2.4.0,<2.5.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-reder >=2.6.0,<2.7.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - r-data.table
     - r-dosnow
@@ -37,10 +38,10 @@ requirements:
     - r-tidyr
     - openjdk
   run:
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-reder >=2.4.0,<2.5.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-reder >=2.6.0,<2.7.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - r-data.table
     - r-dosnow
diff --git a/recipes/bioconductor-transcriptr/meta.yaml b/recipes/bioconductor-transcriptr/meta.yaml
index 61642c5bb8a20..9dbdcebc52b50 100644
--- a/recipes/bioconductor-transcriptr/meta.yaml
+++ b/recipes/bioconductor-transcriptr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "transcriptR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 85c8f7e9e4267dc2fa7710e4db391144
+  md5: a60b381f153539a74fa743f4f5edac43
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-transcriptr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, TxDb.Hsapiens.UCSC.hg19.knownGene, testthat
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-chipseq >=1.50.0,<1.51.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-chipseq >=1.52.0,<1.53.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-caret
     - r-e1071
@@ -38,16 +39,16 @@ requirements:
     - r-proc
     - r-reshape2
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-chipseq >=1.50.0,<1.51.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-chipseq >=1.52.0,<1.53.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-caret
     - r-e1071
diff --git a/recipes/bioconductor-transformgampoi/meta.yaml b/recipes/bioconductor-transformgampoi/meta.yaml
index 9e578d6873ee2..baecaa012883b 100644
--- a/recipes/bioconductor-transformgampoi/meta.yaml
+++ b/recipes/bioconductor-transformgampoi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "transformGamPoi" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 26f9f4a793ca9e8a3107831974857260
+  md5: ec9683fa0efb74c2fae2e8721f265f0b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-transformgampoi", max_pin="x.x") }}'
 # Suggests: testthat, TENxPBMCData, scran, knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-glmgampoi >=1.12.0,<1.13.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-glmgampoi >=1.14.0,<1.15.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - r-rcpp
     - libblas
     - liblapack
   run:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-glmgampoi >=1.12.0,<1.13.0'
-    - 'bioconductor-hdf5array >=1.28.0,<1.29.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-glmgampoi >=1.14.0,<1.15.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - r-rcpp
diff --git a/recipes/bioconductor-transite/meta.yaml b/recipes/bioconductor-transite/meta.yaml
index 382d05db034b8..a5da73a5f57c1 100644
--- a/recipes/bioconductor-transite/meta.yaml
+++ b/recipes/bioconductor-transite/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "transite" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: fca53e0a3e5747c2fc0950fd8103234c
+  md5: 14ac71ed8ae01023f28aaed2d93f83b4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-transite", max_pin="x.x") }}'
 # Suggests: knitr (>= 1.20), rmarkdown (>= 1.10), roxygen2 (>= 6.1.0), testthat (>= 2.1.0)
 # SystemRequirements: C++11
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - 'r-dplyr >=0.7.6'
     - 'r-ggplot2 >=3.0.0'
@@ -35,9 +36,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - 'r-dplyr >=0.7.6'
     - 'r-ggplot2 >=3.0.0'
diff --git a/recipes/bioconductor-translatome/meta.yaml b/recipes/bioconductor-translatome/meta.yaml
index 0087dc14cc434..500e767a03429 100644
--- a/recipes/bioconductor-translatome/meta.yaml
+++ b/recipes/bioconductor-translatome/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "tRanslatome" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,39 +11,40 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a126654549808e184a6fd2b915bf8726
+  md5: 6dabe57675cc4250a3b38f9d309a6816
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-translatome", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-anota >=1.48.0,<1.49.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-gosemsim >=2.26.0,<2.27.0'
-    - 'bioconductor-heatplus >=3.8.0,<3.9.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rankprod >=3.26.0,<3.27.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-anota >=1.50.0,<1.51.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-gosemsim >=2.28.0,<2.29.0'
+    - 'bioconductor-heatplus >=3.10.0,<3.11.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rankprod >=3.28.0,<3.29.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - r-gplots
     - r-plotrix
   run:
-    - 'bioconductor-anota >=1.48.0,<1.49.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-gosemsim >=2.26.0,<2.27.0'
-    - 'bioconductor-heatplus >=3.8.0,<3.9.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rankprod >=3.26.0,<3.27.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-anota >=1.50.0,<1.51.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-gosemsim >=2.28.0,<2.29.0'
+    - 'bioconductor-heatplus >=3.10.0,<3.11.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rankprod >=3.28.0,<3.29.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - r-gplots
     - r-plotrix
diff --git a/recipes/bioconductor-transomics2cytoscape/meta.yaml b/recipes/bioconductor-transomics2cytoscape/meta.yaml
index 82cdcca2598c5..656868a7687e9 100644
--- a/recipes/bioconductor-transomics2cytoscape/meta.yaml
+++ b/recipes/bioconductor-transomics2cytoscape/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "transomics2cytoscape" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 19293f16a9fd2d5f64e7da38a9871ea0
+  md5: 17325dd51ab6dfcc10dff97e98be6e91
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-transomics2cytoscape", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, roxygen2, knitr, BiocStyle, rmarkdown
-# SystemRequirements: Cytoscape >= 3.9.1
+# SystemRequirements: Cytoscape >= 3.10.0
 requirements:
   host:
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-rcy3 >=2.20.0,<2.21.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-rcy3 >=2.22.0,<2.23.0'
     - r-base
     - r-dplyr
+    - r-pbapply
     - r-purrr
     - r-tibble
   run:
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-rcy3 >=2.20.0,<2.21.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-rcy3 >=2.22.0,<2.23.0'
     - r-base
     - r-dplyr
+    - r-pbapply
     - r-purrr
     - r-tibble
 test:
diff --git a/recipes/bioconductor-transview/meta.yaml b/recipes/bioconductor-transview/meta.yaml
index 6dc1578b222ee..361542fb3d1c1 100644
--- a/recipes/bioconductor-transview/meta.yaml
+++ b/recipes/bioconductor-transview/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.44.0" %}
+{% set version = "1.46.0" %}
 {% set name = "TransView" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3a37e697eb98a5b1244563306577befb
+  md5: 39d2c9d2471bb732b294b68f3997eab2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-transview", max_pin="x.x") }}'
 # Suggests: RUnit, pasillaBamSubset, BiocManager
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-gplots
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-gplots
   build:
diff --git a/recipes/bioconductor-traser/meta.yaml b/recipes/bioconductor-traser/meta.yaml
index 3bba0ceecb4e6..cc53d2c42bb9d 100644
--- a/recipes/bioconductor-traser/meta.yaml
+++ b/recipes/bioconductor-traser/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.0" %}
+{% set version = "1.32.0" %}
 {% set name = "traseR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 472e1ac5ad2ccb5a07ea3b046a3727e8
+  md5: 2af018d9562b672f6701de644617856b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-traser", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle,RUnit, BiocGenerics
 requirements:
   host:
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
   run:
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-traviz/build_failure.linux-64.yaml b/recipes/bioconductor-traviz/build_failure.linux-64.yaml
new file mode 100644
index 0000000000000..f1ffa5ab49f58
--- /dev/null
+++ b/recipes/bioconductor-traviz/build_failure.linux-64.yaml
@@ -0,0 +1,104 @@
+recipe_sha: 68cc108a4ebdc4305e3060a475e85276df2f244592455f0f29263f603f48ba51  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+log: |2-
+      libxdamage-cos6-x86_64:        1.1.3-h9b0a68f_1105  conda-forge
+      libxxf86vm-cos6-x86_64:        1.1.3-h9b0a68f_1105  conda-forge
+      mesa-dri-drivers-cos6-x86_64:  11.0.7-h9b0a68f_1105 conda-forge
+      mesa-dri1-drivers-cos6-x86_64: 7.11-h9b0a68f_1105   conda-forge
+      mesa-libgl-cos6-x86_64:        11.0.7-h9b0a68f_1105 conda-forge
+      mesa-libgl-devel-cos6-x86_64:  11.0.7-h9b0a68f_1105 conda-forge
+      pthread-stubs:                 0.4-h36c2ea0_1001    conda-forge
+      sysroot_linux-64:              2.12-he073ed8_16     conda-forge
+      xorg-fixesproto:               5.0-h7f98852_1002    conda-forge
+      xorg-kbproto:                  1.0.7-h7f98852_1002  conda-forge
+      xorg-libx11:                   1.8.7-h8ee46fc_0     conda-forge
+      xorg-libxau:                   1.0.11-hd590300_0    conda-forge
+      xorg-libxdmcp:                 1.1.3-h7f98852_0     conda-forge
+      xorg-libxfixes:                5.0.3-h7f98852_1004  conda-forge
+      xorg-xextproto:                7.3.0-h0b41bf4_1003  conda-forge
+      xorg-xproto:                   7.0.31-h7f98852_1007 conda-forge
+
+  Preparing transaction: ...working... done
+  Verifying transaction: ...working... done
+  Executing transaction: ...working... done
+  Source cache directory is: /opt/conda/conda-bld/src_cache
+  INFO:conda_build.source:Source cache directory is: /opt/conda/conda-bld/src_cache
+  Downloading source to cache: traviz_1.8.0_65f0bdfccd.tar.gz
+  INFO:conda_build.source:Downloading source to cache: traviz_1.8.0_65f0bdfccd.tar.gz
+  Downloading https://bioconductor.org/packages/3.18/bioc/src/contrib/traviz_1.8.0.tar.gz
+  INFO:conda_build.source:Downloading https://bioconductor.org/packages/3.18/bioc/src/contrib/traviz_1.8.0.tar.gz
+  Success
+  INFO:conda_build.source:Success
+  Extracting download
+  source tree in: /opt/conda/conda-bld/bioconductor-traviz_1703280230725/work
+  export PREFIX=/opt/conda/conda-bld/bioconductor-traviz_1703280230725/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla
+  export BUILD_PREFIX=/opt/conda/conda-bld/bioconductor-traviz_1703280230725/_build_env
+  export SRC_DIR=/opt/conda/conda-bld/bioconductor-traviz_1703280230725/work
+  During startup - Warning message:
+  Setting LC_TIME failed, using "C"
+  * installing to library /opt/conda/conda-bld/bioconductor-traviz_1703280230725/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/R/library
+  * installing *source* package traviz ...
+  ** using staged installation
+  ** R
+  ** data
+  ** inst
+  ** byte-compile and prepare package for lazy loading
+  During startup - Warning message:
+  Setting LC_TIME failed, using "C"
+  Warning: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'.
+  ** help
+  *** installing help indices
+  ** building package indices
+  During startup - Warning message:
+  Setting LC_TIME failed, using "C"
+  ** installing vignettes
+  ** testing if installed package can be loaded from temporary location
+  During startup - Warning message:
+  Setting LC_TIME failed, using "C"
+  Warning: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'.
+  ** testing if installed package can be loaded from final location
+  During startup - Warning message:
+  Setting LC_TIME failed, using "C"
+  Warning: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'.
+  ** testing if installed package keeps a record of temporary installation path
+  * creating tarball
+  packaged installation of traviz as traviz_1.8.0_R_x86_64-conda-linux-gnu.tar.gz
+  * DONE (traviz)
+
+  Resource usage statistics from building bioconductor-traviz:
+     Process count: 6
+     CPU time: Sys=0:00:02.2, User=0:00:14.0
+     Memory: 729.5M
+     Disk usage: 7.8K
+     Time elapsed: 0:00:19.3
+
+
+  Packaging bioconductor-traviz
+  INFO:conda_build.build:Packaging bioconductor-traviz
+  Packaging bioconductor-traviz-1.8.0-r43hdfd78af_0
+  INFO:conda_build.build:Packaging bioconductor-traviz-1.8.0-r43hdfd78af_0
+  number of files: 32
+  Fixing permissions
+  Traceback (most recent call last):
+    File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
+      sys.exit(main())
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
+      call_conda_build(action, config)
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
+      result = api.build(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
+      return build_tree(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
+      packages_from_this = build(metadata, stats,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2358, in build
+      newly_built_packages = bundlers[pkg_type](output_d, m, env, stats)
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 1672, in bundle_conda
+      output['checksums'] = create_info_files(metadata, replacements, files, prefix=metadata.config.host_prefix)
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 1272, in create_info_files
+      copy_license(m)
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 762, in copy_license
+      generic_copy(m, "license", "license_file")
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 800, in generic_copy
+      raise ValueError(
+  ValueError: License file given in about/license_file (/opt/recipe/LICENSE) does not exist in source root dir or in recipe root dir (with meta.yaml)
+# Last 100 lines of the build log.
diff --git a/recipes/bioconductor-traviz/meta.yaml b/recipes/bioconductor-traviz/meta.yaml
index 893bd6a022e8c..dc8c8ce9fe896 100644
--- a/recipes/bioconductor-traviz/meta.yaml
+++ b/recipes/bioconductor-traviz/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "traviz" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 1958b9031af3abdc0e7018dc5a425cab
+  md5: 65f0bdfccd1faa4d9b61bef77e686155
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-traviz", max_pin="x.x") }}'
   noarch: generic
 # Suggests: scater, dplyr, testthat (>= 3.0.0), covr, S4Vectors, rmarkdown, knitr
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-slingshot >=2.8.0,<2.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-slingshot >=2.10.0,<2.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-mgcv
@@ -33,10 +34,10 @@ requirements:
     - r-rgl
     - r-viridis
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-slingshot >=2.8.0,<2.9.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-slingshot >=2.10.0,<2.11.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - r-mgcv
@@ -59,6 +60,7 @@ about:
   license: 'MIT + file LICENSE'
   summary: 'Trajectory functions for visualization and interpretation.'
   description: 'traviz provides a suite of functions to plot trajectory related objects from Bioconductor packages. It allows plotting trajectories in reduced dimension, as well as averge gene expression smoothers as a function of pseudotime. Asides from general utility functions, traviz also allows plotting trajectories estimated by Slingshot, as well as smoothers estimated by tradeSeq. Furthermore, it allows for visualization of Slingshot trajectories using ggplot2.'
+  license_file: LICENSE
 extra:
   container:
     extended-base: true
diff --git a/recipes/bioconductor-treeandleaf/meta.yaml b/recipes/bioconductor-treeandleaf/meta.yaml
index 1e11fc2fd2bad..f5ae24bf9b602 100644
--- a/recipes/bioconductor-treeandleaf/meta.yaml
+++ b/recipes/bioconductor-treeandleaf/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "TreeAndLeaf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1e4076b533cb176f32d5498aa923752a
+  md5: 066beb0c7f15d3b6a853bcb68c682f73
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-treeandleaf", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics, stringr, geneplast, ggtree, ggplot2, dplyr, dendextend, RColorBrewer
 requirements:
   host:
-    - 'bioconductor-reder >=2.4.0,<2.5.0'
+    - 'bioconductor-reder >=2.6.0,<2.7.0'
     - r-ape
     - r-base
     - r-igraph
   run:
-    - 'bioconductor-reder >=2.4.0,<2.5.0'
+    - 'bioconductor-reder >=2.6.0,<2.7.0'
     - r-ape
     - r-base
     - r-igraph
diff --git a/recipes/bioconductor-treeio/meta.yaml b/recipes/bioconductor-treeio/meta.yaml
index 423d81525fb03..f7107d562170d 100644
--- a/recipes/bioconductor-treeio/meta.yaml
+++ b/recipes/bioconductor-treeio/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.1" %}
+{% set version = "1.26.0" %}
 {% set name = "treeio" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,35 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: b7d57a69b1ed07beec128f756261ff95
+  md5: 583758f88bf0d8efa0749407f4183567
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-treeio", max_pin="x.x") }}'
   noarch: generic
-# Suggests: Biostrings, ggplot2, ggtree, igraph, knitr, rmarkdown, phangorn, prettydoc, testthat, tidyr, vroom, xml2, yaml, purrr
+# Suggests: Biostrings, ggplot2, ggtree, igraph, knitr, rmarkdown, phangorn, prettydoc, testthat, tidyr, vroom, xml2, yaml, purrr, cli
 requirements:
   host:
     - r-ape
     - r-base
-    - r-cli
     - r-dplyr
     - r-jsonlite
     - r-magrittr
     - r-rlang
     - r-tibble
-    - 'r-tidytree >=0.3.9'
+    - 'r-tidytree >=0.4.5'
   run:
     - r-ape
     - r-base
-    - r-cli
     - r-dplyr
     - r-jsonlite
     - r-magrittr
     - r-rlang
     - r-tibble
-    - 'r-tidytree >=0.3.9'
+    - 'r-tidytree >=0.4.5'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-treekor/meta.yaml b/recipes/bioconductor-treekor/meta.yaml
index 62937050696a4..4eb3c5f1947e7 100644
--- a/recipes/bioconductor-treekor/meta.yaml
+++ b/recipes/bioconductor-treekor/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "treekoR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fdd0132593952c3eed82ef2d3c425d38
+  md5: c1b9ce26aa6252f5cb1fe9cd07c3245f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-treekor", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, CATALYST, testthat (>= 3.0.0)
 requirements:
   host:
-    - 'bioconductor-diffcyt >=1.20.0,<1.21.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
-    - 'bioconductor-hopach >=2.60.0,<2.61.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-diffcyt >=1.22.0,<1.23.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
+    - 'bioconductor-hopach >=2.62.0,<2.63.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-ape
     - r-base
     - r-data.table
@@ -37,11 +38,11 @@ requirements:
     - r-patchwork
     - r-tidyr
   run:
-    - 'bioconductor-diffcyt >=1.20.0,<1.21.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-ggtree >=3.8.0,<3.9.0'
-    - 'bioconductor-hopach >=2.60.0,<2.61.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-diffcyt >=1.22.0,<1.23.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-ggtree >=3.10.0,<3.11.0'
+    - 'bioconductor-hopach >=2.62.0,<2.63.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - r-ape
     - r-base
     - r-data.table
diff --git a/recipes/bioconductor-treesummarizedexperiment/meta.yaml b/recipes/bioconductor-treesummarizedexperiment/meta.yaml
index a70dc907b0ff1..c507405f02a1b 100644
--- a/recipes/bioconductor-treesummarizedexperiment/meta.yaml
+++ b/recipes/bioconductor-treesummarizedexperiment/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.8.0" %}
+{% set version = "2.10.0" %}
 {% set name = "TreeSummarizedExperiment" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,37 +11,38 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a78e6a2d70a7fe7eaa12b1ca77bc832e
+  md5: 595842345af9cb4136aea17bdfdceb3f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-treesummarizedexperiment", max_pin="x.x") }}'
   noarch: generic
 # Suggests: ggtree, ggplot2, BiocStyle, knitr, rmarkdown, testthat
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-treeio >=1.24.0,<1.25.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-treeio >=1.26.0,<1.27.0'
     - r-ape
     - r-base
     - r-dplyr
     - r-rlang
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-treeio >=1.24.0,<1.25.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-treeio >=1.26.0,<1.27.0'
     - r-ape
     - r-base
     - r-dplyr
diff --git a/recipes/bioconductor-treg/meta.yaml b/recipes/bioconductor-treg/meta.yaml
index 29dffb113ff6f..dfeb2c614796a 100644
--- a/recipes/bioconductor-treg/meta.yaml
+++ b/recipes/bioconductor-treg/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "TREG" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 90ee1d8dc737b34549f2ed915c97f833
+  md5: d76ba3f3707e1810e6491d04013d6e7b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-treg", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocFileCache, BiocStyle, dplyr, ggplot2, knitr, pheatmap, sessioninfo, RefManageR, rmarkdown, testthat (>= 3.0.0), tibble, tidyr, SingleCellExperiment
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - r-purrr
     - r-rafalib
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - r-purrr
diff --git a/recipes/bioconductor-trena/meta.yaml b/recipes/bioconductor-trena/meta.yaml
index d1f74db74a027..182c693db2f4d 100644
--- a/recipes/bioconductor-trena/meta.yaml
+++ b/recipes/bioconductor-trena/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.21.0" %}
+{% set version = "1.21.0" %} 
 {% set name = "trena" %}
 {% set bioc = "3.17" %}
 
diff --git a/recipes/bioconductor-trendy/meta.yaml b/recipes/bioconductor-trendy/meta.yaml
index 61b8ce5881abe..aab3bd13ca6aa 100644
--- a/recipes/bioconductor-trendy/meta.yaml
+++ b/recipes/bioconductor-trendy/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.1" %}
 {% set name = "Trendy" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5ee8425a1de6db2081ac61e8252a6382
+  md5: 00e5de9c46c116f4adc3caf3708608df
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-trendy", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, devtools
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dt
     - r-gplots
@@ -32,9 +33,9 @@ requirements:
     - r-shiny
     - r-shinyfiles
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dt
     - r-gplots
diff --git a/recipes/bioconductor-tress/meta.yaml b/recipes/bioconductor-tress/meta.yaml
index 0af5bbd36984e..a3e9ebd429ed9 100644
--- a/recipes/bioconductor-tress/meta.yaml
+++ b/recipes/bioconductor-tress/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "TRESS" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b75e6e03b1b95b420e30bf9a7d8ed2d5
+  md5: f0a0a2bbb1b989970231d8ac23ecfaaa
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tress", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown,BiocStyle
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-matrix
     - r-matrixstats
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-matrix
     - r-matrixstats
diff --git a/recipes/bioconductor-tricycle/meta.yaml b/recipes/bioconductor-tricycle/meta.yaml
index c1b797eb2e8a2..e1fdcf85c0706 100644
--- a/recipes/bioconductor-tricycle/meta.yaml
+++ b/recipes/bioconductor-tricycle/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "tricycle" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 33bba6617090b97414304b1b8697b0af
+  md5: 6a6a35c0a2cd9f279395e046b98a79f6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tricycle", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown, CircStats, cowplot, htmltools, Seurat, org.Hs.eg.db, org.Mm.eg.db
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circular
     - r-dplyr
@@ -36,13 +37,13 @@ requirements:
     - r-rcolorbrewer
     - r-scattermore
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-circular
     - r-dplyr
diff --git a/recipes/bioconductor-trigger/meta.yaml b/recipes/bioconductor-trigger/meta.yaml
index c03ddcc99624f..e17c679057855 100644
--- a/recipes/bioconductor-trigger/meta.yaml
+++ b/recipes/bioconductor-trigger/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "trigger" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 7944a3dc498b593e76945f84bad02cfb
+  md5: d8cb2a76223f510ff08d9dcbf1d6210c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-trigger", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-corpcor
     - r-qtl
     - libblas
     - liblapack
   run:
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-sva >=3.48.0,<3.49.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-sva >=3.50.0,<3.51.0'
     - r-base
     - r-corpcor
     - r-qtl
diff --git a/recipes/bioconductor-trio/meta.yaml b/recipes/bioconductor-trio/meta.yaml
index 4170c29e5b51b..26c7056d86138 100644
--- a/recipes/bioconductor-trio/meta.yaml
+++ b/recipes/bioconductor-trio/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.38.0" %}
+{% set version = "3.40.0" %}
 {% set name = "trio" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 659fd698018b3f4f5a9e7c6c56112ec4
+  md5: cd87ad1a66fe181df937dd7a8edfda56
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-trio", max_pin="x.x") }}'
   noarch: generic
 # Suggests: haplo.stats, mcbiopi, splines, logicFS (>= 1.28.1), KernSmooth, VariantAnnotation
 requirements:
   host:
-    - 'bioconductor-siggenes >=1.74.0,<1.75.0'
+    - 'bioconductor-siggenes >=1.76.0,<1.77.0'
     - r-base
     - 'r-logicreg >=1.6.1'
     - r-survival
   run:
-    - 'bioconductor-siggenes >=1.74.0,<1.75.0'
+    - 'bioconductor-siggenes >=1.76.0,<1.77.0'
     - r-base
     - 'r-logicreg >=1.6.1'
     - r-survival
diff --git a/recipes/bioconductor-triplex/meta.yaml b/recipes/bioconductor-triplex/meta.yaml
index 4954147c5afdf..008158d2d995b 100644
--- a/recipes/bioconductor-triplex/meta.yaml
+++ b/recipes/bioconductor-triplex/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "triplex" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 94c2754156770fdcc42d7ade7fe9b04c
+  md5: c66a6990486e7a4873b256d08eff9933
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-triplex", max_pin="x.x") }}'
 # Suggests: rgl (>= 0.93.932), BSgenome.Celegans.UCSC.ce10, rtracklayer
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-tripr/meta.yaml b/recipes/bioconductor-tripr/meta.yaml
index d6d784902f055..727c7544b3cdb 100644
--- a/recipes/bioconductor-tripr/meta.yaml
+++ b/recipes/bioconductor-tripr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "tripr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 115f039f182a6543c5bb99714e64401e
+  md5: 6682fcae99b44178612cdf8ebc48d045
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tripr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, shinycssloaders, tidyverse, BiocManager, Biostrings, xtable, rlist, motifStack, knitr, rmarkdown, testthat (>= 3.0.0), fs, BiocStyle, RefManageR, biocthis, pryr
 requirements:
diff --git a/recipes/bioconductor-trna/meta.yaml b/recipes/bioconductor-trna/meta.yaml
index 9c111ee141651..1c6f912b7393d 100644
--- a/recipes/bioconductor-trna/meta.yaml
+++ b/recipes/bioconductor-trna/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "tRNA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,37 +11,38 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0870ee6c0b51fc8533a2128c939e9ec4
+  md5: 52f5648075d6e9b6cb9ca2db65b5509f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-trna", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, BiocStyle, tRNAscanImport
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-modstrings >=1.16.0,<1.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-structstrings >=1.16.0,<1.17.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-modstrings >=1.18.0,<1.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-structstrings >=1.18.0,<1.19.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-ggplot2
     - r-scales
     - r-stringr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-modstrings >=1.16.0,<1.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-structstrings >=1.16.0,<1.17.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-modstrings >=1.18.0,<1.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-structstrings >=1.18.0,<1.19.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-ggplot2
     - r-scales
diff --git a/recipes/bioconductor-trnadbimport/meta.yaml b/recipes/bioconductor-trnadbimport/meta.yaml
index f878de839dcbb..4306e7ec1e88a 100644
--- a/recipes/bioconductor-trnadbimport/meta.yaml
+++ b/recipes/bioconductor-trnadbimport/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "tRNAdbImport" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,37 +11,38 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a7fe475fbdfc05e6a9d1593d6289f3da
+  md5: 4610dcee69d8555572652b0193cc5cd3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-trnadbimport", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, httptest, BiocStyle, rtracklayer
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-modstrings >=1.16.0,<1.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-structstrings >=1.16.0,<1.17.0'
-    - 'bioconductor-trna >=1.18.0,<1.19.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-modstrings >=1.18.0,<1.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-structstrings >=1.18.0,<1.19.0'
+    - 'bioconductor-trna >=1.20.0,<1.21.0'
     - r-base
     - r-httr
     - r-stringr
     - r-xml2
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-modstrings >=1.16.0,<1.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-structstrings >=1.16.0,<1.17.0'
-    - 'bioconductor-trna >=1.18.0,<1.19.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-modstrings >=1.18.0,<1.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-structstrings >=1.18.0,<1.19.0'
+    - 'bioconductor-trna >=1.20.0,<1.21.0'
     - r-base
     - r-httr
     - r-stringr
diff --git a/recipes/bioconductor-trnascanimport/meta.yaml b/recipes/bioconductor-trnascanimport/meta.yaml
index ce72bfc877041..87b8afa53958f 100644
--- a/recipes/bioconductor-trnascanimport/meta.yaml
+++ b/recipes/bioconductor-trnascanimport/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "tRNAscanImport" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,43 +11,44 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: fc67c78b9d8ec78f964b095933f36a30
+  md5: 49f872c7de9b6cba139c7758330efa8c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-trnascanimport", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, testthat, ggplot2, BSgenome.Scerevisiae.UCSC.sacCer3
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-structstrings >=1.16.0,<1.17.0'
-    - 'bioconductor-trna >=1.18.0,<1.19.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-structstrings >=1.18.0,<1.19.0'
+    - 'bioconductor-trna >=1.20.0,<1.21.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-stringr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-structstrings >=1.16.0,<1.17.0'
-    - 'bioconductor-trna >=1.18.0,<1.19.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-structstrings >=1.18.0,<1.19.0'
+    - 'bioconductor-trna >=1.20.0,<1.21.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-stringr
 test:
diff --git a/recipes/bioconductor-tronco/meta.yaml b/recipes/bioconductor-tronco/meta.yaml
index 36d229b2a642e..58d3d0dadd395 100644
--- a/recipes/bioconductor-tronco/meta.yaml
+++ b/recipes/bioconductor-tronco/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.32.0" %}
+{% set version = "2.34.0" %}
 {% set name = "TRONCO" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 80ed49d7d0ed5d5078c3029fdefed2e4
+  md5: 0e137e734d0e5552bdcaa25ccdd4df08
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tronco", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, BiocStyle, testthat, knitr, rWikiPathways, magick
 requirements:
   host:
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-bnlearn
     - r-circlize
@@ -37,7 +38,7 @@ requirements:
     - r-scales
     - r-xtable
   run:
-    - 'bioconductor-rgraphviz >=2.44.0,<2.45.0'
+    - 'bioconductor-rgraphviz >=2.46.0,<2.47.0'
     - r-base
     - r-bnlearn
     - r-circlize
diff --git a/recipes/bioconductor-tsar/build.sh b/recipes/bioconductor-tsar/build.sh
new file mode 100644
index 0000000000000..c1d13421f5f1e
--- /dev/null
+++ b/recipes/bioconductor-tsar/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+mkdir -p ~/.R
+echo -e "CC=$CC
+FC=$FC
+CXX=$CXX
+CXX98=$CXX
+CXX11=$CXX
+CXX14=$CXX" > ~/.R/Makevars
+$R CMD INSTALL --build .
\ No newline at end of file
diff --git a/recipes/bioconductor-tsar/meta.yaml b/recipes/bioconductor-tsar/meta.yaml
new file mode 100644
index 0000000000000..b6aae8910eb01
--- /dev/null
+++ b/recipes/bioconductor-tsar/meta.yaml
@@ -0,0 +1,69 @@
+{% set version = "1.0.0" %}
+{% set name = "TSAR" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 7cc8589151c5b03e247590bbd7dc04dd
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tsar", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
+requirements:
+  host:
+    - r-base
+    - 'r-dplyr >=1.0.7'
+    - 'r-ggplot2 >=3.3.5'
+    - 'r-ggpubr >=0.4.0'
+    - 'r-jsonlite >=1.8.7'
+    - 'r-magrittr >=2.0.3'
+    - 'r-mgcv >=1.8.38'
+    - 'r-minpack.lm >=1.2.3'
+    - 'r-openxlsx >=4.2.5.2'
+    - 'r-plotly >=4.10.2'
+    - 'r-readxl >=1.4.0'
+    - 'r-rhandsontable >=0.3.8'
+    - 'r-shiny >=1.7.4.1'
+    - 'r-shinyjs >=2.1.0'
+    - 'r-shinywidgets >=0.7.6'
+    - 'r-stringr >=1.4.0'
+    - 'r-tidyr >=1.1.4'
+  run:
+    - r-base
+    - 'r-dplyr >=1.0.7'
+    - 'r-ggplot2 >=3.3.5'
+    - 'r-ggpubr >=0.4.0'
+    - 'r-jsonlite >=1.8.7'
+    - 'r-magrittr >=2.0.3'
+    - 'r-mgcv >=1.8.38'
+    - 'r-minpack.lm >=1.2.3'
+    - 'r-openxlsx >=4.2.5.2'
+    - 'r-plotly >=4.10.2'
+    - 'r-readxl >=1.4.0'
+    - 'r-rhandsontable >=0.3.8'
+    - 'r-shiny >=1.7.4.1'
+    - 'r-shinyjs >=2.1.0'
+    - 'r-shinywidgets >=0.7.6'
+    - 'r-stringr >=1.4.0'
+    - 'r-tidyr >=1.1.4'
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: AGPL-3
+  summary: 'Thermal Shift Analysis in R'
+  description: 'This package automates analysis workflow for Thermal Shift Analysis (TSAS) data. Processing, analyzing, and visualizing data through both shiny applications and command lines. Package aims to simplify data analysis and offer front to end workflow, from raw data to multiple trial analysis.'
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/AGPL-3'
+
diff --git a/recipes/bioconductor-tscan/meta.yaml b/recipes/bioconductor-tscan/meta.yaml
index 4cf037f190b49..2ea54e7791685 100644
--- a/recipes/bioconductor-tscan/meta.yaml
+++ b/recipes/bioconductor-tscan/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "TSCAN" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9ac450a8f8e95d90e0da330379af5bb0
+  md5: 018be0d6197c80dbf2ce7832a3f9c49d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tscan", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, scuttle, scran, metapod, BiocParallel, BiocNeighbors, batchelor
 requirements:
   host:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-trajectoryutils >=1.8.0,<1.9.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-trajectoryutils >=1.10.0,<1.11.0'
     - r-base
     - r-combinat
     - r-fastica
@@ -38,11 +39,11 @@ requirements:
     - r-plyr
     - r-shiny
   run:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-trajectoryutils >=1.8.0,<1.9.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-trajectoryutils >=1.10.0,<1.11.0'
     - r-base
     - r-combinat
     - r-fastica
diff --git a/recipes/bioconductor-ttgsea/meta.yaml b/recipes/bioconductor-ttgsea/meta.yaml
index f9a1edcf172c9..9266a10fd6ed4 100644
--- a/recipes/bioconductor-ttgsea/meta.yaml
+++ b/recipes/bioconductor-ttgsea/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "ttgsea" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 666f5cb46746a27a71312a8bedee2a49
+  md5: 0b38c9baea88905217b9ed667c80c26f
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ttgsea", max_pin="x.x") }}'
   noarch: generic
 # Suggests: fgsea, knitr, testthat, reticulate, rmarkdown
 requirements:
diff --git a/recipes/bioconductor-ttmap/meta.yaml b/recipes/bioconductor-ttmap/meta.yaml
index af509427b8eb8..bcb28bc41745f 100644
--- a/recipes/bioconductor-ttmap/meta.yaml
+++ b/recipes/bioconductor-ttmap/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "TTMap" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 053ab5b1d1b45af48c5338ebffb4eaf8
+  md5: 9fb52b78486eff55cc91ef0f8116633b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ttmap", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, airway
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-colorramps
     - r-rgl
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-colorramps
     - r-rgl
diff --git a/recipes/bioconductor-tuberculosis/meta.yaml b/recipes/bioconductor-tuberculosis/meta.yaml
index b9e7d08b36705..019d16095c2ba 100644
--- a/recipes/bioconductor-tuberculosis/meta.yaml
+++ b/recipes/bioconductor-tuberculosis/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "tuberculosis" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 9f3fd16d5debb8705f56bf714fc3e860
+  md5: 154cd343b8fba727ecf80a671a6a112d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tuberculosis", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, ggplot2, hrbrthemes, knitr, readr, rmarkdown, scater, usethis, utils
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-magrittr
@@ -34,10 +35,10 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-dplyr
     - r-magrittr
@@ -47,7 +48,7 @@ requirements:
     - r-tibble
     - r-tidyr
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-tuberculosis/post-link.sh b/recipes/bioconductor-tuberculosis/post-link.sh
index 5d70a601472ac..387c3ba762b5d 100644
--- a/recipes/bioconductor-tuberculosis/post-link.sh
+++ b/recipes/bioconductor-tuberculosis/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "tuberculosis-1.6.0"
+installBiocDataPackage.sh "tuberculosis-1.8.0"
diff --git a/recipes/bioconductor-tumourmethdata/meta.yaml b/recipes/bioconductor-tumourmethdata/meta.yaml
new file mode 100644
index 0000000000000..0258769ad47df
--- /dev/null
+++ b/recipes/bioconductor-tumourmethdata/meta.yaml
@@ -0,0 +1,50 @@
+{% set version = "1.0.0" %}
+{% set name = "TumourMethData" %}
+{% set bioc = "3.18" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  url:
+    - 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
+    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
+  md5: 7b4ba6a8a59379a3b7f368e6c26fa0a6
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tumourmethdata", max_pin="x.x") }}'
+  noarch: generic
+# Suggests: ggplot2, knitr, rmarkdown
+requirements:
+  host:
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-r.utils
+  run:
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-hdf5array >=1.30.0,<1.31.0'
+    - 'bioconductor-rhdf5 >=2.46.0,<2.47.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - r-base
+    - r-r.utils
+    - curl
+    - 'bioconductor-data-packages >=20231203'
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/html/{{ name }}.html'
+  license: Artistic-2.0
+  summary: 'A Collection of DNA Methylation Datasets for Human Tumour Samples and Matching Normal Samples'
+  description: 'TumourMethData collects tumour methylation data from a variety of different tumour types (and also matching normal samples where available) and produced with different technologies (e.g. WGBS, RRBS and methylation arrays) and provides them as RangedSummarizedExperiments. This facilitates easy extraction of methylation data for regions of interest across different tumour types and studies.'
+
diff --git a/recipes/bioconductor-tumourmethdata/post-link.sh b/recipes/bioconductor-tumourmethdata/post-link.sh
new file mode 100644
index 0000000000000..8e6c2a8a145a1
--- /dev/null
+++ b/recipes/bioconductor-tumourmethdata/post-link.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+installBiocDataPackage.sh "tumourmethdata-1.0.0"
diff --git a/recipes/bioconductor-tumourmethdata/pre-unlink.sh b/recipes/bioconductor-tumourmethdata/pre-unlink.sh
new file mode 100644
index 0000000000000..6eb78cbb96c43
--- /dev/null
+++ b/recipes/bioconductor-tumourmethdata/pre-unlink.sh
@@ -0,0 +1 @@
+R CMD REMOVE --library=$PREFIX/lib/R/library/ TumourMethData
diff --git a/recipes/bioconductor-turbonorm/meta.yaml b/recipes/bioconductor-turbonorm/meta.yaml
index e5b09163eae71..0818a2addd0ac 100644
--- a/recipes/bioconductor-turbonorm/meta.yaml
+++ b/recipes/bioconductor-turbonorm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.48.0" %}
+{% set version = "1.50.0" %}
 {% set name = "TurboNorm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 82bdd2f9cb32c4366ba0c8983e31acc8
+  md5: 6df6da83bc36e4ce202d91888feaafa7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
-# Suggests: BiocStyle, affydata
+  run_exports: '{{ pin_subpackage("bioconductor-turbonorm", max_pin="x.x") }}'
+# Suggests: BiocStyle, affydata, hgu95av2cdf
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-convert >=1.76.0,<1.77.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-convert >=1.78.0,<1.79.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
     - r-lattice
     - libblas
     - liblapack
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-convert >=1.76.0,<1.77.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-marray >=1.78.0,<1.79.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-convert >=1.78.0,<1.79.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-marray >=1.80.0,<1.81.0'
     - r-base
     - r-lattice
   build:
diff --git a/recipes/bioconductor-tvtb/meta.yaml b/recipes/bioconductor-tvtb/meta.yaml
index d7bcadb51de52..6955abe0f5030 100644
--- a/recipes/bioconductor-tvtb/meta.yaml
+++ b/recipes/bioconductor-tvtb/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "TVTB" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,51 +11,52 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 3e1e1dc3b593cb5f838eb3a40ffb59d0
+  md5: 64da00f3c21bf3f9a82dc32e451395a1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tvtb", max_pin="x.x") }}'
   noarch: generic
 # Suggests: EnsDb.Hsapiens.v75 (>= 0.99.7), shiny (>= 0.13.2.9005), DT (>= 0.1.67), rtracklayer, BiocStyle (>= 2.5.19), knitr (>= 1.12), rmarkdown, testthat, covr, pander
 requirements:
   host:
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-ensemblvep >=1.42.0,<1.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-ensemblvep >=1.44.0,<1.45.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-ggally
     - r-ggplot2
     - r-reshape2
   run:
-    - 'bioconductor-annotationfilter >=1.24.0,<1.25.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-ensemblvep >=1.42.0,<1.43.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationfilter >=1.26.0,<1.27.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-ensemblvep >=1.44.0,<1.45.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-ggally
     - r-ggplot2
diff --git a/recipes/bioconductor-tweedeseq/meta.yaml b/recipes/bioconductor-tweedeseq/meta.yaml
index 646f74165d5b7..2005ab0221e0d 100644
--- a/recipes/bioconductor-tweedeseq/meta.yaml
+++ b/recipes/bioconductor-tweedeseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.45.0" %}
+{% set version = "1.48.0" %}
 {% set name = "tweeDEseq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d9cc6b9ec2db1052d2ed270dbb1f6ec1
+  md5: 1a919ba1b3c5709068bc126336b77826
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tweedeseq", max_pin="x.x") }}'
 # Suggests: tweeDEseqCountData, xtable
 requirements:
   host:
-    - 'bioconductor-cqn >=1.46.0,<1.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-cqn >=1.48.0,<1.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-mass
+    - 'r-rcpp >=1.0.10'
     - libblas
     - liblapack
   run:
-    - 'bioconductor-cqn >=1.46.0,<1.47.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-cqn >=1.48.0,<1.49.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-mass
+    - 'r-rcpp >=1.0.10'
   build:
     - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
     - make
 test:
   commands:
@@ -43,7 +47,7 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: 'GPL (>= 2)'
   summary: 'RNA-seq data analysis using the Poisson-Tweedie family of distributions'
-  description: 'Differential expression analysis of RNA-seq using the Poisson-Tweedie family of distributions.'
+  description: 'Differential expression analysis of RNA-seq using the Poisson-Tweedie (PT) family of distributions. PT distributions are described by a mean, a dispersion and a shape parameter and include Poisson and NB distributions, among others, as particular cases. An important feature of this family is that, while the Negative Binomial (NB) distribution only allows a quadratic mean-variance relationship, the PT distributions generalizes this relationship to any orde.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 extra:
   identifiers:
diff --git a/recipes/bioconductor-tweedeseqcountdata/build_failure.linux-64.yaml b/recipes/bioconductor-tweedeseqcountdata/build_failure.linux-64.yaml
new file mode 100644
index 0000000000000..3e36ab5993f41
--- /dev/null
+++ b/recipes/bioconductor-tweedeseqcountdata/build_failure.linux-64.yaml
@@ -0,0 +1,44 @@
+recipe_sha: e9ea10dec9b205dbce587c85515bdb5db1c152a2def749ed83d0b124ea0cec27  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+reason: |-
+  WARNING:conda_build.build:No files or script found for output bioconductor-tweedeseqcountdata
+category: |-
+  source download error
+log: |-
+  08:56:10 BIOCONDA INFO (OUT) Downloading https://bioconductor.org/packages/3.18/data/experiment/src/contrib/tweeDEseqCountData_1.40.0.tar.gz
+  08:56:10 BIOCONDA INFO (OUT) INFO:conda_build.source:Downloading https://bioconductor.org/packages/3.18/data/experiment/src/contrib/tweeDEseqCountData_1.40.0.tar.gz
+  08:56:11 BIOCONDA INFO (OUT) Success
+  08:56:11 BIOCONDA INFO (OUT) INFO:conda_build.source:Success
+  08:56:11 BIOCONDA INFO (OUT) Extracting download
+  08:56:11 BIOCONDA INFO (OUT) source tree in: /opt/conda/conda-bld/bioconductor-tweedeseqcountdata_1702025598887/work
+  08:56:11 BIOCONDA INFO (OUT) Packaging bioconductor-tweedeseqcountdata
+  08:56:11 BIOCONDA INFO (OUT) INFO:conda_build.build:Packaging bioconductor-tweedeseqcountdata
+  08:56:11 BIOCONDA INFO (OUT) Packaging bioconductor-tweedeseqcountdata-1.40.0-r43hdfd78af_0
+  08:56:11 BIOCONDA INFO (OUT) INFO:conda_build.build:Packaging bioconductor-tweedeseqcountdata-1.40.0-r43hdfd78af_0
+  08:56:11 BIOCONDA INFO (OUT) No files or script found for output bioconductor-tweedeseqcountdata
+  08:56:11 BIOCONDA INFO (OUT) WARNING:conda_build.build:No files or script found for output bioconductor-tweedeseqcountdata
+  08:56:12 BIOCONDA INFO (OUT) number of files: 2
+  08:56:12 BIOCONDA INFO (OUT) Fixing permissions
+  08:56:12 BIOCONDA INFO (OUT) Traceback (most recent call last):
+  08:56:12 BIOCONDA INFO (OUT)   File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
+  08:56:12 BIOCONDA INFO (OUT)     sys.exit(main())
+  08:56:12 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
+  08:56:12 BIOCONDA INFO (OUT)     call_conda_build(action, config)
+  08:56:12 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
+  08:56:12 BIOCONDA INFO (OUT)     result = api.build(
+  08:56:12 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
+  08:56:12 BIOCONDA INFO (OUT)     return build_tree(
+  08:56:12 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
+  08:56:12 BIOCONDA INFO (OUT)     packages_from_this = build(metadata, stats,
+  08:56:12 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2358, in build
+  08:56:12 BIOCONDA INFO (OUT)     newly_built_packages = bundlers[pkg_type](output_d, m, env, stats)
+  08:56:12 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 1672, in bundle_conda
+  08:56:12 BIOCONDA INFO (OUT)     output['checksums'] = create_info_files(metadata, replacements, files, prefix=metadata.config.host_prefix)
+  08:56:12 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 1272, in create_info_files
+  08:56:12 BIOCONDA INFO (OUT)     copy_license(m)
+  08:56:12 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 762, in copy_license
+  08:56:12 BIOCONDA INFO (OUT)     generic_copy(m, "license", "license_file")
+  08:56:12 BIOCONDA INFO (OUT)   File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 800, in generic_copy
+  08:56:12 BIOCONDA INFO (OUT)     raise ValueError(
+  08:56:12 BIOCONDA INFO (OUT) ValueError: License file given in about/license_file (/opt/recipe/LICENSE) does not exist in source root dir or in recipe root dir (with meta.yaml)
+  .08:56:20 BIOCONDA ERROR COMMAND FAILED (exited with 1): docker run -t --net host --rm -v /tmp/tmpbp4seh01/build_script.bash:/opt/build_script.bash -v /opt/mambaforge/envs/bioconda/conda-bld/:/opt/host-conda-bld -v /home/runner/work/bioconda-recipes/bioconda-recipes/recipes/bioconductor-tweedeseqcountdata:/opt/recipe -e LANG=C.UTF-8 -e HOST_USER_ID=1001 quay.io/bioconda/bioconda-utils-build-env-cos7:2.11.0 /bin/bash /opt/build_script.bash
diff --git a/recipes/bioconductor-tweedeseqcountdata/meta.yaml b/recipes/bioconductor-tweedeseqcountdata/meta.yaml
index e98b6cb1fc0f6..4cec84b4097ed 100644
--- a/recipes/bioconductor-tweedeseqcountdata/meta.yaml
+++ b/recipes/bioconductor-tweedeseqcountdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "tweeDEseqCountData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b48baebaa2abe35419bad4110d7523ec
+  md5: d63e819cedf93ffbe115ed518bc9feaf
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tweedeseqcountdata", max_pin="x.x") }}'
   noarch: generic
+# Suggests: knitr, BiocStyle, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/data/experiment/html/{{ name }}.html'
-  license: 'GPL (>=2)'
+  license: 'MIT + file LICENSE'
   summary: 'RNA-seq count data employed in the vignette of the tweeDEseq package'
   description: 'RNA-seq count data from Pickrell et al. (2010) employed to illustrate the use of the Poisson-Tweedie family of distributions with the tweeDEseq package.'
-  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+  license_file: LICENSE
 
diff --git a/recipes/bioconductor-tweedeseqcountdata/post-link.sh b/recipes/bioconductor-tweedeseqcountdata/post-link.sh
index ee220691d0a70..5418d98cd3da2 100644
--- a/recipes/bioconductor-tweedeseqcountdata/post-link.sh
+++ b/recipes/bioconductor-tweedeseqcountdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "tweedeseqcountdata-1.38.0"
+installBiocDataPackage.sh "tweedeseqcountdata-1.40.0"
diff --git a/recipes/bioconductor-twilight/meta.yaml b/recipes/bioconductor-twilight/meta.yaml
index 4c5e88db6a0e8..42a74a2994831 100644
--- a/recipes/bioconductor-twilight/meta.yaml
+++ b/recipes/bioconductor-twilight/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.76.0" %}
+{% set version = "1.78.0" %}
 {% set name = "twilight" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 9b97614549c3048f37ee8db280fe7602
+  md5: fa6b01126ace9423edfc04757f6392b1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-twilight", max_pin="x.x") }}'
 # Suggests: golubEsets (>= 1.4.2), vsn (>= 1.7.2)
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-twoddpcr/meta.yaml b/recipes/bioconductor-twoddpcr/meta.yaml
index 4a2997ce8842d..1de09201d6a1c 100644
--- a/recipes/bioconductor-twoddpcr/meta.yaml
+++ b/recipes/bioconductor-twoddpcr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "twoddpcr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 598cbdea40a78c70568965c4a87019c4
+  md5: bbdb2cd12a3bd6f756b700d1216043ee
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-twoddpcr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: devtools, knitr, reshape2, rmarkdown, testthat, BiocStyle
 requirements:
   host:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-class
     - r-ggplot2
@@ -30,7 +31,7 @@ requirements:
     - r-scales
     - r-shiny
   run:
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-class
     - r-ggplot2
diff --git a/recipes/bioconductor-txcutr/meta.yaml b/recipes/bioconductor-txcutr/meta.yaml
index 708de4be2a766..0e45c92ea1d02 100644
--- a/recipes/bioconductor-txcutr/meta.yaml
+++ b/recipes/bioconductor-txcutr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "txcutr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,36 +11,37 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: da702f8e8c123e0745674ba4610a1a05
+  md5: 10d81d02156a45cebc08845455180010
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txcutr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RefManageR, BiocStyle, knitr, sessioninfo, rmarkdown, testthat (>= 3.0.0), TxDb.Scerevisiae.UCSC.sacCer3.sgdGene, BSgenome.Scerevisiae.UCSC.sacCer3
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-txdb.athaliana.biomart.plantsmart22/meta.yaml b/recipes/bioconductor-txdb.athaliana.biomart.plantsmart22/meta.yaml
index 8011c9090a8ad..a6886a0920dd4 100644
--- a/recipes/bioconductor-txdb.athaliana.biomart.plantsmart22/meta.yaml
+++ b/recipes/bioconductor-txdb.athaliana.biomart.plantsmart22/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.0.1" %}
 {% set name = "TxDb.Athaliana.BioMart.plantsmart22" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 3bab54295e300fedba99eef521220e50
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.athaliana.biomart.plantsmart22", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.athaliana.biomart.plantsmart25/meta.yaml b/recipes/bioconductor-txdb.athaliana.biomart.plantsmart25/meta.yaml
index 2ff8cad569c54..eda07b96d60d3 100644
--- a/recipes/bioconductor-txdb.athaliana.biomart.plantsmart25/meta.yaml
+++ b/recipes/bioconductor-txdb.athaliana.biomart.plantsmart25/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.1.3" %}
 {% set name = "TxDb.Athaliana.BioMart.plantsmart25" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: eb007c07317b9717c76949e5ed999978
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.athaliana.biomart.plantsmart25", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.athaliana.biomart.plantsmart28/meta.yaml b/recipes/bioconductor-txdb.athaliana.biomart.plantsmart28/meta.yaml
index 9aba3d36ac6ed..63dab73960eb5 100644
--- a/recipes/bioconductor-txdb.athaliana.biomart.plantsmart28/meta.yaml
+++ b/recipes/bioconductor-txdb.athaliana.biomart.plantsmart28/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.2" %}
 {% set name = "TxDb.Athaliana.BioMart.plantsmart28" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 9ed52284f01e08fc382db179b544bb17
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.athaliana.biomart.plantsmart28", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.athaliana.biomart.plantsmart51/meta.yaml b/recipes/bioconductor-txdb.athaliana.biomart.plantsmart51/meta.yaml
index 2e048e1293d01..d69be5548db43 100644
--- a/recipes/bioconductor-txdb.athaliana.biomart.plantsmart51/meta.yaml
+++ b/recipes/bioconductor-txdb.athaliana.biomart.plantsmart51/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.0" %}
 {% set name = "TxDb.Athaliana.BioMart.plantsmart51" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: c623af555537bfd9958f8f9573308103
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.athaliana.biomart.plantsmart51", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.btaurus.ucsc.bostau8.refgene/meta.yaml b/recipes/bioconductor-txdb.btaurus.ucsc.bostau8.refgene/meta.yaml
index 46d445c651fb0..4a642c4756fcb 100644
--- a/recipes/bioconductor-txdb.btaurus.ucsc.bostau8.refgene/meta.yaml
+++ b/recipes/bioconductor-txdb.btaurus.ucsc.bostau8.refgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "TxDb.Btaurus.UCSC.bosTau8.refGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 2112b91fbecabf9c89d1b0a48d88ce03
 build:
-  number: 6
+  number: 7
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.btaurus.ucsc.bostau8.refgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.btaurus.ucsc.bostau9.refgene/meta.yaml b/recipes/bioconductor-txdb.btaurus.ucsc.bostau9.refgene/meta.yaml
index 7f89af6557ccc..a6ba08db8eca3 100644
--- a/recipes/bioconductor-txdb.btaurus.ucsc.bostau9.refgene/meta.yaml
+++ b/recipes/bioconductor-txdb.btaurus.ucsc.bostau9.refgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.10.0" %}
 {% set name = "TxDb.Btaurus.UCSC.bosTau9.refGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: fe443d123b0b788e1e450f4e60036788
 build:
-  number: 8
+  number: 9
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.btaurus.ucsc.bostau9.refgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.celegans.ucsc.ce11.ensgene/meta.yaml b/recipes/bioconductor-txdb.celegans.ucsc.ce11.ensgene/meta.yaml
index 1db5d62f78fb1..b4921754ff83d 100644
--- a/recipes/bioconductor-txdb.celegans.ucsc.ce11.ensgene/meta.yaml
+++ b/recipes/bioconductor-txdb.celegans.ucsc.ce11.ensgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.15.0" %}
 {% set name = "TxDb.Celegans.UCSC.ce11.ensGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 1b4d61d06ac8acb27e57d1fafc5b79ce
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.celegans.ucsc.ce11.ensgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.celegans.ucsc.ce11.refgene/meta.yaml b/recipes/bioconductor-txdb.celegans.ucsc.ce11.refgene/meta.yaml
index 28e829fb1aca1..25dfa74d6898a 100644
--- a/recipes/bioconductor-txdb.celegans.ucsc.ce11.refgene/meta.yaml
+++ b/recipes/bioconductor-txdb.celegans.ucsc.ce11.refgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.4.6" %}
 {% set name = "TxDb.Celegans.UCSC.ce11.refGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 3765169432e745aff5e85afd239066ca
 build:
-  number: 10
+  number: 11
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.celegans.ucsc.ce11.refgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.celegans.ucsc.ce6.ensgene/meta.yaml b/recipes/bioconductor-txdb.celegans.ucsc.ce6.ensgene/meta.yaml
index 957e6b067aaf1..039511fff6c9e 100644
--- a/recipes/bioconductor-txdb.celegans.ucsc.ce6.ensgene/meta.yaml
+++ b/recipes/bioconductor-txdb.celegans.ucsc.ce6.ensgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.2" %}
 {% set name = "TxDb.Celegans.UCSC.ce6.ensGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 215c2edd440a3df8229fe6a75b431aa8
 build:
-  number: 15
+  number: 16
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.celegans.ucsc.ce6.ensgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.cfamiliaris.ucsc.canfam3.refgene/meta.yaml b/recipes/bioconductor-txdb.cfamiliaris.ucsc.canfam3.refgene/meta.yaml
index c647963377fb5..18ad135c029fc 100644
--- a/recipes/bioconductor-txdb.cfamiliaris.ucsc.canfam3.refgene/meta.yaml
+++ b/recipes/bioconductor-txdb.cfamiliaris.ucsc.canfam3.refgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.11.0" %}
 {% set name = "TxDb.Cfamiliaris.UCSC.canFam3.refGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: bf6af84c14a30ad5d01f3678246b1180
 build:
-  number: 7
+  number: 8
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.cfamiliaris.ucsc.canfam3.refgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.cfamiliaris.ucsc.canfam4.refgene/meta.yaml b/recipes/bioconductor-txdb.cfamiliaris.ucsc.canfam4.refgene/meta.yaml
index c45c3264a26d4..b46d02cb2c06d 100644
--- a/recipes/bioconductor-txdb.cfamiliaris.ucsc.canfam4.refgene/meta.yaml
+++ b/recipes/bioconductor-txdb.cfamiliaris.ucsc.canfam4.refgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.0" %}
 {% set name = "TxDb.Cfamiliaris.UCSC.canFam4.refGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 0b47072fa79cf8e99f8563002a0998cb
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.cfamiliaris.ucsc.canfam4.refgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.cfamiliaris.ucsc.canfam5.refgene/meta.yaml b/recipes/bioconductor-txdb.cfamiliaris.ucsc.canfam5.refgene/meta.yaml
index 65c1b1d17f91e..ddec9ac42b39b 100644
--- a/recipes/bioconductor-txdb.cfamiliaris.ucsc.canfam5.refgene/meta.yaml
+++ b/recipes/bioconductor-txdb.cfamiliaris.ucsc.canfam5.refgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.0" %}
 {% set name = "TxDb.Cfamiliaris.UCSC.canFam5.refGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: fc3d84569c092b74e5e0bccb785db8b6
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.cfamiliaris.ucsc.canfam5.refgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.cfamiliaris.ucsc.canfam6.refgene/meta.yaml b/recipes/bioconductor-txdb.cfamiliaris.ucsc.canfam6.refgene/meta.yaml
index 1a6043e0ea30e..59b9744aeb5b0 100644
--- a/recipes/bioconductor-txdb.cfamiliaris.ucsc.canfam6.refgene/meta.yaml
+++ b/recipes/bioconductor-txdb.cfamiliaris.ucsc.canfam6.refgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.17.0" %}
 {% set name = "TxDb.Cfamiliaris.UCSC.canFam6.refGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 9279204329323191fbb72717a57b13aa
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.cfamiliaris.ucsc.canfam6.refgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene/meta.yaml b/recipes/bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene/meta.yaml
index c42688c4f3d01..d1f4e9fba8f5e 100644
--- a/recipes/bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene/meta.yaml
+++ b/recipes/bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.2" %}
 {% set name = "TxDb.Dmelanogaster.UCSC.dm3.ensGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 46b7ffe0c516edf8a2a3b5d78e0d8b67
 build:
-  number: 16
+  number: 17
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.dmelanogaster.ucsc.dm6.ensgene/meta.yaml b/recipes/bioconductor-txdb.dmelanogaster.ucsc.dm6.ensgene/meta.yaml
index 4d1aafa9dbaa7..e336c647d474a 100644
--- a/recipes/bioconductor-txdb.dmelanogaster.ucsc.dm6.ensgene/meta.yaml
+++ b/recipes/bioconductor-txdb.dmelanogaster.ucsc.dm6.ensgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "TxDb.Dmelanogaster.UCSC.dm6.ensGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: bec18a1fb2768347e907e3171d5332ca
 build:
-  number: 6
+  number: 7
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.dmelanogaster.ucsc.dm6.ensgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.drerio.ucsc.danrer10.refgene/meta.yaml b/recipes/bioconductor-txdb.drerio.ucsc.danrer10.refgene/meta.yaml
index 6068ea11a32d2..fca8354c5912c 100644
--- a/recipes/bioconductor-txdb.drerio.ucsc.danrer10.refgene/meta.yaml
+++ b/recipes/bioconductor-txdb.drerio.ucsc.danrer10.refgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.4.6" %}
 {% set name = "TxDb.Drerio.UCSC.danRer10.refGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: fef9bbec3809e1b69991516988f146fb
 build:
-  number: 10
+  number: 11
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.drerio.ucsc.danrer10.refgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.drerio.ucsc.danrer11.refgene/meta.yaml b/recipes/bioconductor-txdb.drerio.ucsc.danrer11.refgene/meta.yaml
index 24e329bb6164b..f95557448c480 100644
--- a/recipes/bioconductor-txdb.drerio.ucsc.danrer11.refgene/meta.yaml
+++ b/recipes/bioconductor-txdb.drerio.ucsc.danrer11.refgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.4.6" %}
 {% set name = "TxDb.Drerio.UCSC.danRer11.refGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 3d4ded4cec068a807b8b86b31389b677
 build:
-  number: 10
+  number: 11
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.drerio.ucsc.danrer11.refgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.ggallus.ucsc.galgal4.refgene/meta.yaml b/recipes/bioconductor-txdb.ggallus.ucsc.galgal4.refgene/meta.yaml
index 0bcae1e37f595..a4d1e1a9d9a08 100644
--- a/recipes/bioconductor-txdb.ggallus.ucsc.galgal4.refgene/meta.yaml
+++ b/recipes/bioconductor-txdb.ggallus.ucsc.galgal4.refgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "TxDb.Ggallus.UCSC.galGal4.refGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: d50eb467227cd9077a7a690ae6934d11
 build:
-  number: 6
+  number: 7
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.ggallus.ucsc.galgal4.refgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.ggallus.ucsc.galgal5.refgene/meta.yaml b/recipes/bioconductor-txdb.ggallus.ucsc.galgal5.refgene/meta.yaml
index a5619d77db894..c539c071a4343 100644
--- a/recipes/bioconductor-txdb.ggallus.ucsc.galgal5.refgene/meta.yaml
+++ b/recipes/bioconductor-txdb.ggallus.ucsc.galgal5.refgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "TxDb.Ggallus.UCSC.galGal5.refGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 0df53cd4f8e29705df75867a427de56e
 build:
-  number: 6
+  number: 7
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.ggallus.ucsc.galgal5.refgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.ggallus.ucsc.galgal6.refgene/meta.yaml b/recipes/bioconductor-txdb.ggallus.ucsc.galgal6.refgene/meta.yaml
index 22dded94e5395..9a465cc414e93 100644
--- a/recipes/bioconductor-txdb.ggallus.ucsc.galgal6.refgene/meta.yaml
+++ b/recipes/bioconductor-txdb.ggallus.ucsc.galgal6.refgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.10.0" %}
 {% set name = "TxDb.Ggallus.UCSC.galGal6.refGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 4d81026ecb786abf1fe0cb548238214c
 build:
-  number: 8
+  number: 9
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.ggallus.ucsc.galgal6.refgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.hsapiens.biomart.igis/meta.yaml b/recipes/bioconductor-txdb.hsapiens.biomart.igis/meta.yaml
index 68ed5a6e6c194..3dbd6d642a0c9 100644
--- a/recipes/bioconductor-txdb.hsapiens.biomart.igis/meta.yaml
+++ b/recipes/bioconductor-txdb.hsapiens.biomart.igis/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.3.2" %}
 {% set name = "TxDb.Hsapiens.BioMart.igis" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 75b793928d29bcd3f069b5986bc2cfae
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.hsapiens.biomart.igis", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.hsapiens.ucsc.hg18.knowngene/meta.yaml b/recipes/bioconductor-txdb.hsapiens.ucsc.hg18.knowngene/meta.yaml
index 766497a9f5d34..1e389329cbe79 100644
--- a/recipes/bioconductor-txdb.hsapiens.ucsc.hg18.knowngene/meta.yaml
+++ b/recipes/bioconductor-txdb.hsapiens.ucsc.hg18.knowngene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.2" %}
 {% set name = "TxDb.Hsapiens.UCSC.hg18.knownGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: e8b32a672e87345c72bb30be73d1e2d6
 build:
-  number: 15
+  number: 16
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.hsapiens.ucsc.hg18.knowngene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.hsapiens.ucsc.hg19.knowngene/meta.yaml b/recipes/bioconductor-txdb.hsapiens.ucsc.hg19.knowngene/meta.yaml
index 664361974a4c3..09de8f7c38a1f 100644
--- a/recipes/bioconductor-txdb.hsapiens.ucsc.hg19.knowngene/meta.yaml
+++ b/recipes/bioconductor-txdb.hsapiens.ucsc.hg19.knowngene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.2" %}
 {% set name = "TxDb.Hsapiens.UCSC.hg19.knownGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 61be88a81433958571b57d0952be48a0
 build:
-  number: 15
+  number: 16
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.hsapiens.ucsc.hg19.knowngene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.hsapiens.ucsc.hg19.lincrnastranscripts/meta.yaml b/recipes/bioconductor-txdb.hsapiens.ucsc.hg19.lincrnastranscripts/meta.yaml
index 40debb03a2b43..4559792f7c905 100644
--- a/recipes/bioconductor-txdb.hsapiens.ucsc.hg19.lincrnastranscripts/meta.yaml
+++ b/recipes/bioconductor-txdb.hsapiens.ucsc.hg19.lincrnastranscripts/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.2" %}
 {% set name = "TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: a0d61cd90639c40b3d0bb6bdb043cf12
 build:
-  number: 17
+  number: 18
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.hsapiens.ucsc.hg19.lincrnastranscripts", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.hsapiens.ucsc.hg38.knowngene/meta.yaml b/recipes/bioconductor-txdb.hsapiens.ucsc.hg38.knowngene/meta.yaml
index 4d52500d1e3c9..618385aa5a855 100644
--- a/recipes/bioconductor-txdb.hsapiens.ucsc.hg38.knowngene/meta.yaml
+++ b/recipes/bioconductor-txdb.hsapiens.ucsc.hg38.knowngene/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "TxDb.Hsapiens.UCSC.hg38.knownGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a9b7cfbf5ed7d9ef129c84abdd7858dc
+  md5: 2344dbd2878c82c6c860ed6529a700b2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.hsapiens.ucsc.hg38.knowngene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.hsapiens.ucsc.hg38.knowngene/post-link.sh b/recipes/bioconductor-txdb.hsapiens.ucsc.hg38.knowngene/post-link.sh
index 989c79064a838..7e845c2497808 100644
--- a/recipes/bioconductor-txdb.hsapiens.ucsc.hg38.knowngene/post-link.sh
+++ b/recipes/bioconductor-txdb.hsapiens.ucsc.hg38.knowngene/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "txdb.hsapiens.ucsc.hg38.knowngene-3.17.0"
+installBiocDataPackage.sh "txdb.hsapiens.ucsc.hg38.knowngene-3.18.0"
diff --git a/recipes/bioconductor-txdb.hsapiens.ucsc.hg38.refgene/meta.yaml b/recipes/bioconductor-txdb.hsapiens.ucsc.hg38.refgene/meta.yaml
index 62180f04d9b91..fbea99b3dbea6 100644
--- a/recipes/bioconductor-txdb.hsapiens.ucsc.hg38.refgene/meta.yaml
+++ b/recipes/bioconductor-txdb.hsapiens.ucsc.hg38.refgene/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.15.0" %}
+{% set version = "3.18.0" %}
 {% set name = "TxDb.Hsapiens.UCSC.hg38.refGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 50e7c4ce068c4ca2d77a3c0b46a3ab45
+  md5: 7ec982095ea795b99d53b6549d7ba4d4
 build:
-  number: 1
+  number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.hsapiens.ucsc.hg38.refgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.hsapiens.ucsc.hg38.refgene/post-link.sh b/recipes/bioconductor-txdb.hsapiens.ucsc.hg38.refgene/post-link.sh
index 0b664dac3262c..165899b5e92d6 100644
--- a/recipes/bioconductor-txdb.hsapiens.ucsc.hg38.refgene/post-link.sh
+++ b/recipes/bioconductor-txdb.hsapiens.ucsc.hg38.refgene/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "txdb.hsapiens.ucsc.hg38.refgene-3.15.0"
+installBiocDataPackage.sh "txdb.hsapiens.ucsc.hg38.refgene-3.18.0"
diff --git a/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac10.refgene/meta.yaml b/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac10.refgene/meta.yaml
index 22bf3eb855a3e..71ee0e7b1156c 100644
--- a/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac10.refgene/meta.yaml
+++ b/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac10.refgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.14.0" %}
 {% set name = "TxDb.Mmulatta.UCSC.rheMac10.refGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 81b01b07d87ae91b4d9a269a2baf616e
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.mmulatta.ucsc.rhemac10.refgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac3.refgene/meta.yaml b/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac3.refgene/meta.yaml
index 4e21a38d6ccda..0534539bc09fe 100644
--- a/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac3.refgene/meta.yaml
+++ b/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac3.refgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "TxDb.Mmulatta.UCSC.rheMac3.refGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: db84a9e85d613635d74002f11df41e1f
 build:
-  number: 6
+  number: 7
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.mmulatta.ucsc.rhemac3.refgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac8.refgene/meta.yaml b/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac8.refgene/meta.yaml
index 584c9a333cb06..bc41e0d7a744b 100644
--- a/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac8.refgene/meta.yaml
+++ b/recipes/bioconductor-txdb.mmulatta.ucsc.rhemac8.refgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "TxDb.Mmulatta.UCSC.rheMac8.refGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 8437e0a05ffd28b667c7b740e0db68a7
 build:
-  number: 6
+  number: 7
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.mmulatta.ucsc.rhemac8.refgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.mmusculus.ucsc.mm10.ensgene/meta.yaml b/recipes/bioconductor-txdb.mmusculus.ucsc.mm10.ensgene/meta.yaml
index 459b32c3a98bb..d32fc6e7daded 100644
--- a/recipes/bioconductor-txdb.mmusculus.ucsc.mm10.ensgene/meta.yaml
+++ b/recipes/bioconductor-txdb.mmusculus.ucsc.mm10.ensgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.4.0" %}
 {% set name = "TxDb.Mmusculus.UCSC.mm10.ensGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 88d65b714d1f86b456aee2b8524e9d84
 build:
-  number: 16
+  number: 17
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.mmusculus.ucsc.mm10.ensgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.mmusculus.ucsc.mm10.knowngene/meta.yaml b/recipes/bioconductor-txdb.mmusculus.ucsc.mm10.knowngene/meta.yaml
index fa8fefd0a88e2..1466d7f497572 100644
--- a/recipes/bioconductor-txdb.mmusculus.ucsc.mm10.knowngene/meta.yaml
+++ b/recipes/bioconductor-txdb.mmusculus.ucsc.mm10.knowngene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.10.0" %}
 {% set name = "TxDb.Mmusculus.UCSC.mm10.knownGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 129b610bf05ec77451731196baa55bcc
 build:
-  number: 8
+  number: 9
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.mmusculus.ucsc.mm10.knowngene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.mmusculus.ucsc.mm39.knowngene/meta.yaml b/recipes/bioconductor-txdb.mmusculus.ucsc.mm39.knowngene/meta.yaml
index d06a04e2188f3..7d5fc68376690 100644
--- a/recipes/bioconductor-txdb.mmusculus.ucsc.mm39.knowngene/meta.yaml
+++ b/recipes/bioconductor-txdb.mmusculus.ucsc.mm39.knowngene/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "TxDb.Mmusculus.UCSC.mm39.knownGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ca2e9ed7dc7fe96ef98b18e3c7e3245a
+  md5: 5ceb110ce3327d44f45bf5118ec7f3af
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.mmusculus.ucsc.mm39.knowngene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.mmusculus.ucsc.mm39.knowngene/post-link.sh b/recipes/bioconductor-txdb.mmusculus.ucsc.mm39.knowngene/post-link.sh
index b53c424d92c0a..40c86bb8d84f5 100644
--- a/recipes/bioconductor-txdb.mmusculus.ucsc.mm39.knowngene/post-link.sh
+++ b/recipes/bioconductor-txdb.mmusculus.ucsc.mm39.knowngene/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "txdb.mmusculus.ucsc.mm39.knowngene-3.17.0"
+installBiocDataPackage.sh "txdb.mmusculus.ucsc.mm39.knowngene-3.18.0"
diff --git a/recipes/bioconductor-txdb.mmusculus.ucsc.mm39.refgene/meta.yaml b/recipes/bioconductor-txdb.mmusculus.ucsc.mm39.refgene/meta.yaml
index 04ef013177696..9734f2b6f61c1 100644
--- a/recipes/bioconductor-txdb.mmusculus.ucsc.mm39.refgene/meta.yaml
+++ b/recipes/bioconductor-txdb.mmusculus.ucsc.mm39.refgene/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.12.0" %}
+{% set version = "3.18.0" %}
 {% set name = "TxDb.Mmusculus.UCSC.mm39.refGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2525799b85e0a52bf274ab5eed51cd84
+  md5: 2fd64557d5f1bade11432b666c63f33a
 build:
-  number: 6
+  number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.mmusculus.ucsc.mm39.refgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.mmusculus.ucsc.mm39.refgene/post-link.sh b/recipes/bioconductor-txdb.mmusculus.ucsc.mm39.refgene/post-link.sh
index 2fc5b5d65dd07..039d2293e91ed 100644
--- a/recipes/bioconductor-txdb.mmusculus.ucsc.mm39.refgene/post-link.sh
+++ b/recipes/bioconductor-txdb.mmusculus.ucsc.mm39.refgene/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "txdb.mmusculus.ucsc.mm39.refgene-3.12.0"
+installBiocDataPackage.sh "txdb.mmusculus.ucsc.mm39.refgene-3.18.0"
diff --git a/recipes/bioconductor-txdb.mmusculus.ucsc.mm9.knowngene/meta.yaml b/recipes/bioconductor-txdb.mmusculus.ucsc.mm9.knowngene/meta.yaml
index a1ef79d8b7a66..4b3641897a188 100644
--- a/recipes/bioconductor-txdb.mmusculus.ucsc.mm9.knowngene/meta.yaml
+++ b/recipes/bioconductor-txdb.mmusculus.ucsc.mm9.knowngene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.2" %}
 {% set name = "TxDb.Mmusculus.UCSC.mm9.knownGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: cb72af039b011033477363bda8ed9104
 build:
-  number: 15
+  number: 16
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.mmusculus.ucsc.mm9.knowngene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro4.refgene/meta.yaml b/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro4.refgene/meta.yaml
index 93301e0d981e2..45f0301d0133b 100644
--- a/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro4.refgene/meta.yaml
+++ b/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro4.refgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "TxDb.Ptroglodytes.UCSC.panTro4.refGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 9bdd3ba81561550f50250368d7d52eaa
 build:
-  number: 6
+  number: 7
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.ptroglodytes.ucsc.pantro4.refgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro5.refgene/meta.yaml b/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro5.refgene/meta.yaml
index 351b5edc41946..e46a4701dd0a3 100644
--- a/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro5.refgene/meta.yaml
+++ b/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro5.refgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "TxDb.Ptroglodytes.UCSC.panTro5.refGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 76ee1d253d1c8e54c12e8d5b9db93303
 build:
-  number: 6
+  number: 7
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.ptroglodytes.ucsc.pantro5.refgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro6.refgene/meta.yaml b/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro6.refgene/meta.yaml
index f25065559cccb..7e50c87b44421 100644
--- a/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro6.refgene/meta.yaml
+++ b/recipes/bioconductor-txdb.ptroglodytes.ucsc.pantro6.refgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.10.0" %}
 {% set name = "TxDb.Ptroglodytes.UCSC.panTro6.refGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 48a88973fe0e5117cadd5c816a46e6e9
 build:
-  number: 8
+  number: 9
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.ptroglodytes.ucsc.pantro6.refgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.rnorvegicus.biomart.igis/meta.yaml b/recipes/bioconductor-txdb.rnorvegicus.biomart.igis/meta.yaml
index d1310743d20d7..072131a10520b 100644
--- a/recipes/bioconductor-txdb.rnorvegicus.biomart.igis/meta.yaml
+++ b/recipes/bioconductor-txdb.rnorvegicus.biomart.igis/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.3.2" %}
 {% set name = "TxDb.Rnorvegicus.BioMart.igis" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: eaf695f63cd021074d68c76d148cdfb7
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.rnorvegicus.biomart.igis", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene/meta.yaml b/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene/meta.yaml
index 8e1e7c08903b2..87c5843fcb54e 100644
--- a/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene/meta.yaml
+++ b/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.2" %}
 {% set name = "TxDb.Rnorvegicus.UCSC.rn4.ensGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 6bf2ebc522c2828c036e52b2028792c1
 build:
-  number: 15
+  number: 16
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene/meta.yaml b/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene/meta.yaml
index f9c1a81bab905..7a4c200fb093a 100644
--- a/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene/meta.yaml
+++ b/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "TxDb.Rnorvegicus.UCSC.rn5.refGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 8a93a15b37bf73e5c529c976c4561537
 build:
-  number: 6
+  number: 7
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn6.ncbirefseq/meta.yaml b/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn6.ncbirefseq/meta.yaml
index ac1b3853eb920..a891c74d515a3 100644
--- a/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn6.ncbirefseq/meta.yaml
+++ b/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn6.ncbirefseq/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "TxDb.Rnorvegicus.UCSC.rn6.ncbiRefSeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 6660ee000fbc956541728c6dadf1fca7
 build:
-  number: 6
+  number: 7
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.rnorvegicus.ucsc.rn6.ncbirefseq", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene/meta.yaml b/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene/meta.yaml
index 4cc98f3db3ee6..18c8a1da4b97b 100644
--- a/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene/meta.yaml
+++ b/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.4.6" %}
 {% set name = "TxDb.Rnorvegicus.UCSC.rn6.refGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: ea525daa75bcf165eb24f6e93f4dbf6c
 build:
-  number: 10
+  number: 11
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn7.refgene/meta.yaml b/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn7.refgene/meta.yaml
index d383b75fe0cbd..50c4b8f2e2f3f 100644
--- a/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn7.refgene/meta.yaml
+++ b/recipes/bioconductor-txdb.rnorvegicus.ucsc.rn7.refgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.15.0" %}
 {% set name = "TxDb.Rnorvegicus.UCSC.rn7.refGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 589dc0f8f4c6ee8f5ed11aeb95a74a7d
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.rnorvegicus.ucsc.rn7.refgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.scerevisiae.ucsc.saccer2.sgdgene/meta.yaml b/recipes/bioconductor-txdb.scerevisiae.ucsc.saccer2.sgdgene/meta.yaml
index 4a09a8c215b8e..15d753d9f15d2 100644
--- a/recipes/bioconductor-txdb.scerevisiae.ucsc.saccer2.sgdgene/meta.yaml
+++ b/recipes/bioconductor-txdb.scerevisiae.ucsc.saccer2.sgdgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.2" %}
 {% set name = "TxDb.Scerevisiae.UCSC.sacCer2.sgdGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 8ce83ef2ba6cfc69f9b4435a0a047819
 build:
-  number: 18
+  number: 19
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.scerevisiae.ucsc.saccer2.sgdgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.scerevisiae.ucsc.saccer3.sgdgene/meta.yaml b/recipes/bioconductor-txdb.scerevisiae.ucsc.saccer3.sgdgene/meta.yaml
index e84ce9f6c0dd3..c404797fc5a6d 100644
--- a/recipes/bioconductor-txdb.scerevisiae.ucsc.saccer3.sgdgene/meta.yaml
+++ b/recipes/bioconductor-txdb.scerevisiae.ucsc.saccer3.sgdgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.2" %}
 {% set name = "TxDb.Scerevisiae.UCSC.sacCer3.sgdGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: afb23b3265730b9e59c2f07ab37cc3a0
 build:
-  number: 21
+  number: 22
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.scerevisiae.ucsc.saccer3.sgdgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.sscrofa.ucsc.susscr11.refgene/meta.yaml b/recipes/bioconductor-txdb.sscrofa.ucsc.susscr11.refgene/meta.yaml
index 58510c515e0d2..0aac7bae47394 100644
--- a/recipes/bioconductor-txdb.sscrofa.ucsc.susscr11.refgene/meta.yaml
+++ b/recipes/bioconductor-txdb.sscrofa.ucsc.susscr11.refgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "TxDb.Sscrofa.UCSC.susScr11.refGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: a6c5a2c402ad904a2f55099e391d18de
 build:
-  number: 6
+  number: 7
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.sscrofa.ucsc.susscr11.refgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-txdb.sscrofa.ucsc.susscr3.refgene/meta.yaml b/recipes/bioconductor-txdb.sscrofa.ucsc.susscr3.refgene/meta.yaml
index 522da876b179d..dafdf280b2985 100644
--- a/recipes/bioconductor-txdb.sscrofa.ucsc.susscr3.refgene/meta.yaml
+++ b/recipes/bioconductor-txdb.sscrofa.ucsc.susscr3.refgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.12.0" %}
 {% set name = "TxDb.Sscrofa.UCSC.susScr3.refGene" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,22 +13,23 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 981602dc706e545d5acdf7590e222ca7
 build:
-  number: 6
+  number: 7
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-txdb.sscrofa.ucsc.susscr3.refgene", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-tximeta/meta.yaml b/recipes/bioconductor-tximeta/meta.yaml
index d1564f35f1dbd..1195350a6e9cc 100644
--- a/recipes/bioconductor-tximeta/meta.yaml
+++ b/recipes/bioconductor-tximeta/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.1" %}
 {% set name = "tximeta" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,45 +11,48 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 0c1de1419dbe0b129421a1a7ada21fe8
+  md5: 20a7fe1f7efc9be9ab420325932b8c0b
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tximeta", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, tximportData, org.Dm.eg.db, DESeq2, fishpond, edgeR, limma, devtools
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tximport >=1.28.0,<1.29.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhdf5 >=2.0.0,<2.46.1'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tximport >=1.30.0,<1.31.0'
     - r-base
     - r-jsonlite
     - r-matrix
     - r-tibble
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-ensembldb >=2.24.0,<2.25.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-tximport >=1.28.0,<1.29.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-ensembldb >=2.26.0,<2.27.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rhdf5 >=2.0.0,<2.46.1'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-tximport >=1.30.0,<1.31.0'
     - r-base
     - r-jsonlite
     - r-matrix
@@ -61,7 +64,7 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: GPL-2
   summary: 'Transcript Quantification Import with Automatic Metadata'
-  description: 'Transcript quantification import from Salmon and alevin with automatic attachment of transcript ranges and release information, and other associated metadata. De novo transcriptomes can be linked to the appropriate sources with linkedTxomes and shared for computational reproducibility.'
+  description: 'Transcript quantification import from Salmon and other quantifiers with automatic attachment of transcript ranges and release information, and other associated metadata. De novo transcriptomes can be linked to the appropriate sources with linkedTxomes and shared for computational reproducibility.'
   license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2'
 extra:
   parent_recipe:
diff --git a/recipes/bioconductor-tximport/meta.yaml b/recipes/bioconductor-tximport/meta.yaml
index cdda57ad44ec5..0cac1468cec2d 100644
--- a/recipes/bioconductor-tximport/meta.yaml
+++ b/recipes/bioconductor-tximport/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "tximport" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,14 +11,15 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 6b52b54d5477b1612e7be93cfd08d796
+  md5: 8bbe549dafbf5b0dfe626f327910a893
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tximport", max_pin="x.x") }}'
   noarch: generic
-# Suggests: knitr, rmarkdown, testthat, tximportData, TxDb.Hsapiens.UCSC.hg19.knownGene, readr (>= 0.2.2), limma, edgeR, DESeq2 (>= 1.11.6), rhdf5, jsonlite, matrixStats, Matrix, eds
+# Suggests: knitr, rmarkdown, testthat, tximportData, TxDb.Hsapiens.UCSC.hg19.knownGene, readr (>= 0.2.2), arrow, limma, edgeR, DESeq2 (>= 1.11.6), rhdf5, jsonlite, matrixStats, Matrix, eds
 requirements:
   host:
     - r-base
diff --git a/recipes/bioconductor-tximportdata/meta.yaml b/recipes/bioconductor-tximportdata/meta.yaml
index c468adfd7aa19..67efaa786b0ac 100644
--- a/recipes/bioconductor-tximportdata/meta.yaml
+++ b/recipes/bioconductor-tximportdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.28.0" %}
+{% set version = "1.30.0" %}
 {% set name = "tximportData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 8b5ef0f4b63bcd11c21a8389af32fa1f
+  md5: 4494d764fc087333e5c04ee7977c85c8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-tximportdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, markdown
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-tximportdata/post-link.sh b/recipes/bioconductor-tximportdata/post-link.sh
index 5ec2e04af174c..d17909a301ad8 100644
--- a/recipes/bioconductor-tximportdata/post-link.sh
+++ b/recipes/bioconductor-tximportdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "tximportdata-1.28.0"
+installBiocDataPackage.sh "tximportdata-1.30.0"
diff --git a/recipes/bioconductor-typeinfo/meta.yaml b/recipes/bioconductor-typeinfo/meta.yaml
index 5b60c14bd9cf1..11ddbcbf2414b 100644
--- a/recipes/bioconductor-typeinfo/meta.yaml
+++ b/recipes/bioconductor-typeinfo/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.66.0" %}
+{% set version = "1.68.0" %}
 {% set name = "TypeInfo" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 13936395f272715de70454397c80d7eb
+  md5: a2c4ab8a27a1d9c5a463a18cd0e37356
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-typeinfo", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biobase
 requirements:
diff --git a/recipes/bioconductor-u133aaofav2cdf/meta.yaml b/recipes/bioconductor-u133aaofav2cdf/meta.yaml
index 7f158e92ca7e6..68e66f5114324 100644
--- a/recipes/bioconductor-u133aaofav2cdf/meta.yaml
+++ b/recipes/bioconductor-u133aaofav2cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "u133aaofav2cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 716483ddb6664b8b7f0c58cd21136e8b
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-u133aaofav2cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-u133x3p.db/meta.yaml b/recipes/bioconductor-u133x3p.db/meta.yaml
index a315d9457b0e8..141cf64856d0d 100644
--- a/recipes/bioconductor-u133x3p.db/meta.yaml
+++ b/recipes/bioconductor-u133x3p.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "u133x3p.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 1a36a09dc64b94728bf6ac75600b40c6
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-u133x3p.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-u133x3pcdf/meta.yaml b/recipes/bioconductor-u133x3pcdf/meta.yaml
index 52b3580ddceb0..c14b372731fdb 100644
--- a/recipes/bioconductor-u133x3pcdf/meta.yaml
+++ b/recipes/bioconductor-u133x3pcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "u133x3pcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: ee4e62041bc8c63813e8cf8400ece2f3
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-u133x3pcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-u133x3pprobe/meta.yaml b/recipes/bioconductor-u133x3pprobe/meta.yaml
index 000ab40decaa2..2d940a22ec63b 100644
--- a/recipes/bioconductor-u133x3pprobe/meta.yaml
+++ b/recipes/bioconductor-u133x3pprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "u133x3pprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 81e2b00985688160805147bef0c638be
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-u133x3pprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ucell/meta.yaml b/recipes/bioconductor-ucell/meta.yaml
index e858d65a0d465..584900adb879c 100644
--- a/recipes/bioconductor-ucell/meta.yaml
+++ b/recipes/bioconductor-ucell/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.4.0" %}
+{% set version = "2.6.2" %}
 {% set name = "UCell" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b3b3b2f541a098357e0d324a468cc5fa
+  md5: c02318fc6a9ac12b0d902460be5204d4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ucell", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Seurat, scater, scRNAseq, reshape2, patchwork, ggplot2, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-data.table >=1.13.6'
     - r-matrix
   run:
-    - 'bioconductor-biocneighbors >=1.18.0,<1.19.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocneighbors >=1.20.0,<1.21.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - 'r-data.table >=1.13.6'
     - r-matrix
diff --git a/recipes/bioconductor-ucscrepeatmasker/meta.yaml b/recipes/bioconductor-ucscrepeatmasker/meta.yaml
index 2cec4f1d771cf..732e819f62c2b 100644
--- a/recipes/bioconductor-ucscrepeatmasker/meta.yaml
+++ b/recipes/bioconductor-ucscrepeatmasker/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.15.2" %}
 {% set name = "UCSCRepeatMasker" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,27 +13,28 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: ad19a6fbd936e478af88fa21bc918a29
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ucscrepeatmasker", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
     - r-base
     - r-rcurl
     - r-xml
   run:
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
     - r-base
     - r-rcurl
     - r-xml
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ularcirc/meta.yaml b/recipes/bioconductor-ularcirc/meta.yaml
index 8ca10d19bda19..1007d484742c7 100644
--- a/recipes/bioconductor-ularcirc/meta.yaml
+++ b/recipes/bioconductor-ularcirc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "Ularcirc" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b82a3d2b16ce13cc2c3c354aec4f1e77
+  md5: dee64401e02d9e5884a6399d7ab122b2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ularcirc", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BSgenome.Hsapiens.UCSC.hg38, BiocStyle, httpuv, knitr, org.Hs.eg.db, rmarkdown, TxDb.Hsapiens.UCSC.hg38.knownGene
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
     - 'bioconductor-genomeinfodbdata >=1.2.0,<1.3.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - 'bioconductor-mirbase.db >=1.2.0,<1.3.0'
-    - 'bioconductor-organism.dplyr >=1.28.0,<1.29.0'
-    - 'bioconductor-plotgardener >=1.6.0,<1.7.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-organism.dplyr >=1.30.0,<1.31.0'
+    - 'bioconductor-plotgardener >=1.8.0,<1.9.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-data.table >=1.9.4'
     - r-dt
@@ -49,20 +50,20 @@ requirements:
     - r-shinyjs
     - r-yaml
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationhub >=3.8.0,<3.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationhub >=3.10.0,<3.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
     - 'bioconductor-genomeinfodbdata >=1.2.0,<1.3.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - 'bioconductor-mirbase.db >=1.2.0,<1.3.0'
-    - 'bioconductor-organism.dplyr >=1.28.0,<1.29.0'
-    - 'bioconductor-plotgardener >=1.6.0,<1.7.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-organism.dplyr >=1.30.0,<1.31.0'
+    - 'bioconductor-plotgardener >=1.8.0,<1.9.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-data.table >=1.9.4'
     - r-dt
diff --git a/recipes/bioconductor-umi4cats/meta.yaml b/recipes/bioconductor-umi4cats/meta.yaml
index 3e76de3805dc8..caa73d85038c4 100644
--- a/recipes/bioconductor-umi4cats/meta.yaml
+++ b/recipes/bioconductor-umi4cats/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "UMI4Cats" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 84b4b4be278891d3503c78e20d3dfa6c
+  md5: bfadc67d7452919fe1e4a63684692442
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-umi4cats", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, BSgenome.Hsapiens.UCSC.hg19, tidyr, testthat
 requirements:
   host:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rbowtie2 >=2.6.0,<2.7.0'
-    - 'bioconductor-regioner >=1.32.0,<1.33.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rbowtie2 >=2.8.0,<2.9.0'
+    - 'bioconductor-regioner >=1.34.0,<1.35.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
     - r-base
     - r-cowplot
@@ -56,24 +57,24 @@ requirements:
     - r-stringr
     - r-zoo
   run:
-    - 'bioconductor-annotate >=1.78.0,<1.79.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-rbowtie2 >=2.6.0,<2.7.0'
-    - 'bioconductor-regioner >=1.32.0,<1.33.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-shortread >=1.58.0,<1.59.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-annotate >=1.80.0,<1.81.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-rbowtie2 >=2.8.0,<2.9.0'
+    - 'bioconductor-regioner >=1.34.0,<1.35.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-shortread >=1.60.0,<1.61.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
     - r-base
     - r-cowplot
diff --git a/recipes/bioconductor-uncoverapplib/meta.yaml b/recipes/bioconductor-uncoverapplib/meta.yaml
index 85e9b6269cd56..1a28223113b02 100644
--- a/recipes/bioconductor-uncoverapplib/meta.yaml
+++ b/recipes/bioconductor-uncoverapplib/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "uncoverappLib" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ec3e240519cd29c9a91154e0c38bf211
+  md5: 2aa395f92e95d5ff7e67612c6a2c0021
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-uncoverapplib", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, testthat, rmarkdown, dplyr
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
     - 'bioconductor-ensdb.hsapiens.v75 >=2.99.0,<2.100.0'
     - 'bioconductor-ensdb.hsapiens.v86 >=2.99.0,<2.100.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
     - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-organismdbi >=1.42.0,<1.43.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-organismdbi >=1.44.0,<1.45.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.17.0,<3.18.0'
+    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.18.0,<3.19.0'
     - r-base
     - r-condformat
     - r-dt
@@ -48,18 +49,18 @@ requirements:
     - r-shinywidgets
     - r-stringr
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
     - 'bioconductor-ensdb.hsapiens.v75 >=2.99.0,<2.100.0'
     - 'bioconductor-ensdb.hsapiens.v86 >=2.99.0,<2.100.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
     - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0'
-    - 'bioconductor-org.hs.eg.db >=3.17.0,<3.18.0'
-    - 'bioconductor-organismdbi >=1.42.0,<1.43.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-org.hs.eg.db >=3.18.0,<3.19.0'
+    - 'bioconductor-organismdbi >=1.44.0,<1.45.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.17.0,<3.18.0'
+    - 'bioconductor-txdb.hsapiens.ucsc.hg38.knowngene >=3.18.0,<3.19.0'
     - r-base
     - r-condformat
     - r-dt
diff --git a/recipes/bioconductor-undo/meta.yaml b/recipes/bioconductor-undo/meta.yaml
index 30cd162fb9e37..f214965e0b298 100644
--- a/recipes/bioconductor-undo/meta.yaml
+++ b/recipes/bioconductor-undo/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "UNDO" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6a8de0b0595afb75551a7186b00b45bf
+  md5: a94665c036a09fbf3728f0a1ad220dfa
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-undo", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-boot
     - r-mass
     - r-nnls
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-boot
     - r-mass
diff --git a/recipes/bioconductor-unifiedwmwqpcr/meta.yaml b/recipes/bioconductor-unifiedwmwqpcr/meta.yaml
index 92fae1b55a09a..9c7b8e08be53a 100644
--- a/recipes/bioconductor-unifiedwmwqpcr/meta.yaml
+++ b/recipes/bioconductor-unifiedwmwqpcr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "unifiedWMWqPCR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5014bd5d35c03623b142b02ac2599eaa
+  md5: d9a09d196f72dc2246328247851dd24a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-unifiedwmwqpcr", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-htqpcr >=1.54.0,<1.55.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-htqpcr >=1.56.0,<1.57.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-htqpcr >=1.54.0,<1.55.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-htqpcr >=1.56.0,<1.57.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-uniprot.ws/meta.yaml b/recipes/bioconductor-uniprot.ws/meta.yaml
index 095637e68a890..07e01957f1b4c 100644
--- a/recipes/bioconductor-uniprot.ws/meta.yaml
+++ b/recipes/bioconductor-uniprot.ws/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.40.1" %}
+{% set version = "2.42.0" %}
 {% set name = "UniProt.ws" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 19942d736d5f87dcb885720b524ce954
+  md5: 47d9ee4038c5dcaf66229e4e1e07c052
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-uniprot.ws", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocbaseutils >=1.2.0,<1.3.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocbaseutils >=1.4.0,<1.5.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-httpcache
     - r-httr
@@ -33,10 +34,10 @@ requirements:
     - r-rjsoncons
     - r-rsqlite
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biocbaseutils >=1.2.0,<1.3.0'
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biocbaseutils >=1.4.0,<1.5.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - r-base
     - r-httpcache
     - r-httr
diff --git a/recipes/bioconductor-uniprotkeywords/meta.yaml b/recipes/bioconductor-uniprotkeywords/meta.yaml
index d14358fb3dfa3..e997cfd605a01 100644
--- a/recipes/bioconductor-uniprotkeywords/meta.yaml
+++ b/recipes/bioconductor-uniprotkeywords/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.99.4" %}
+{% set version = "0.99.7" %}
 {% set name = "UniProtKeywords" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f3f91ac1b8eca20fabcf46cae4348ea5
+  md5: b2cda32dda256fb0d110192e194af838
 build:
-  number: 1
+  number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-uniprotkeywords", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, markdown, testthat
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-uniprotkeywords/post-link.sh b/recipes/bioconductor-uniprotkeywords/post-link.sh
index 5a72202c55dd6..2f90ff95a700c 100644
--- a/recipes/bioconductor-uniprotkeywords/post-link.sh
+++ b/recipes/bioconductor-uniprotkeywords/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "uniprotkeywords-0.99.4"
+installBiocDataPackage.sh "uniprotkeywords-0.99.7"
diff --git a/recipes/bioconductor-uniquorn/meta.yaml b/recipes/bioconductor-uniquorn/meta.yaml
index 74ffa08b92ef2..3bcbea9f536d0 100644
--- a/recipes/bioconductor-uniquorn/meta.yaml
+++ b/recipes/bioconductor-uniquorn/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.20.0" %}
+{% set version = "2.22.0" %}
 {% set name = "Uniquorn" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ca181ab420669fd785a9984d9c3a03e1
+  md5: 63658e23af6991784cdd4b038f2d1268
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-uniquorn", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, BiocGenerics
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-data.table
     - r-doparallel
@@ -32,9 +33,9 @@ requirements:
     - r-stringr
     - r-writexls
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-data.table
     - r-doparallel
diff --git a/recipes/bioconductor-universalmotif/meta.yaml b/recipes/bioconductor-universalmotif/meta.yaml
index d828d62f4b536..3e87affe747df 100644
--- a/recipes/bioconductor-universalmotif/meta.yaml
+++ b/recipes/bioconductor-universalmotif/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.1" %}
+{% set version = "1.20.0" %}
 {% set name = "universalmotif" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 53ef747289e457e4097ced1d46199854
+  md5: fe680a8d988fce6bfde0af9fdce148de
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-universalmotif", max_pin="x.x") }}'
 # Suggests: spelling, knitr, bookdown, TFBSTools, rmarkdown, MotifDb, testthat, BiocParallel, seqLogo, motifStack, dplyr, ape, ggtree, processx, ggseqlogo, cowplot, GenomicRanges, ggbio
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - r-mass
@@ -35,11 +36,11 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-ggplot2
     - r-mass
diff --git a/recipes/bioconductor-updateobject/meta.yaml b/recipes/bioconductor-updateobject/meta.yaml
index e6901ad19b093..0ac250a75a4ef 100644
--- a/recipes/bioconductor-updateobject/meta.yaml
+++ b/recipes/bioconductor-updateobject/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "updateObject" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d7a6ae09fcd22300d35d2ff503ce9f08
+  md5: 0d69cbbcd4bd9c5f31d905a47f6af212
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-updateobject", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicRanges, SummarizedExperiment, InteractionSet, SingleCellExperiment, MultiAssayExperiment, TimiRGeN, testthat, knitr, rmarkdown, BiocStyle
 # SystemRequirements: git
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-digest
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-digest
 test:
diff --git a/recipes/bioconductor-usort/meta.yaml b/recipes/bioconductor-usort/meta.yaml
index c3367d77d2e81..5783b25934ca6 100644
--- a/recipes/bioconductor-usort/meta.yaml
+++ b/recipes/bioconductor-usort/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "uSORT" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 0fb4c6b3706ad7e264a9f106c5519169
+  md5: 0c89e7d86bb2f37b99ce32989b121110
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-usort", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, RUnit, testthat, ggplot2
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-monocle >=2.28.0,<2.29.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-monocle >=2.30.0,<2.31.0'
     - r-base
     - r-cluster
     - r-fpc
@@ -35,9 +36,9 @@ requirements:
     - r-rspectra
     - r-vgam
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-monocle >=2.28.0,<2.29.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-monocle >=2.30.0,<2.31.0'
     - r-base
     - r-cluster
     - r-fpc
diff --git a/recipes/bioconductor-vaexprs/meta.yaml b/recipes/bioconductor-vaexprs/meta.yaml
index 12718521e4783..41a54d8a833b0 100644
--- a/recipes/bioconductor-vaexprs/meta.yaml
+++ b/recipes/bioconductor-vaexprs/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "VAExprs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7f66a09bd4ecba61a3bb6a4931f9a2ff
+  md5: 6f9ed6eba476abd7908d6849381b545c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-vaexprs", max_pin="x.x") }}'
   noarch: generic
 # Suggests: SC3, knitr, testthat, reticulate, rmarkdown
 requirements:
   host:
-    - 'bioconductor-deeppincs >=1.8.0,<1.9.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-deeppincs >=1.10.0,<1.11.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-catencoders
     - r-diagrammer
@@ -33,10 +34,10 @@ requirements:
     - r-purrr
     - r-tensorflow
   run:
-    - 'bioconductor-deeppincs >=1.8.0,<1.9.0'
-    - 'bioconductor-scater >=1.28.0,<1.29.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-deeppincs >=1.10.0,<1.11.0'
+    - 'bioconductor-scater >=1.30.0,<1.31.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-catencoders
     - r-diagrammer
diff --git a/recipes/bioconductor-vanillaice/meta.yaml b/recipes/bioconductor-vanillaice/meta.yaml
index 0b037492191c2..ef2b66554d491 100644
--- a/recipes/bioconductor-vanillaice/meta.yaml
+++ b/recipes/bioconductor-vanillaice/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.62.0" %}
+{% set version = "1.64.0" %}
 {% set name = "VanillaICE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e1544c4961ab0be39a24130c53fce392
+  md5: 557131c410cc7474d15a4cc9a7d940de
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-vanillaice", max_pin="x.x") }}'
 # Suggests: RUnit, human610quadv1bCrlmm
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg18 >=1.3.0,<1.4.0'
-    - 'bioconductor-crlmm >=1.58.0,<1.59.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-crlmm >=1.60.0,<1.61.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-foreach
@@ -39,17 +40,17 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg18 >=1.3.0,<1.4.0'
-    - 'bioconductor-crlmm >=1.58.0,<1.59.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-oligoclasses >=1.62.0,<1.63.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-crlmm >=1.60.0,<1.61.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-oligoclasses >=1.64.0,<1.65.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-foreach
diff --git a/recipes/bioconductor-varcon/meta.yaml b/recipes/bioconductor-varcon/meta.yaml
index dd6f12bfb8cbe..409d0dc24a003 100644
--- a/recipes/bioconductor-varcon/meta.yaml
+++ b/recipes/bioconductor-varcon/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "VarCon" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b0ded1a90369093a4576e0d86660ca32
+  md5: 843e95d7843d7611c222d8cbca8814b1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-varcon", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-ggplot2
     - r-shiny
     - r-shinycssloaders
     - r-shinyfiles
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
     - r-base
     - r-ggplot2
     - r-shiny
diff --git a/recipes/bioconductor-variancepartition/meta.yaml b/recipes/bioconductor-variancepartition/meta.yaml
index 9e8cf690075ff..ff40c729611e6 100644
--- a/recipes/bioconductor-variancepartition/meta.yaml
+++ b/recipes/bioconductor-variancepartition/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.30.2" %}
+{% set version = "1.32.2" %}
 {% set name = "variancePartition" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,57 +11,58 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: ea2b29627ac9a4e7c039319af82a2caf
+  md5: 75a8e840769ba62b9f175c73aba9c99a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-variancepartition", max_pin="x.x") }}'
   noarch: generic
-# Suggests: BiocStyle, knitr, pander, rmarkdown, edgeR, dendextend, tximport, tximportData, ballgown, DESeq2, Rfast, zenith, RUnit, statmod, BiocGenerics, r2glmm, readr
+# Suggests: BiocStyle, knitr, pander, rmarkdown, edgeR, dendextend, tximport, tximportData, ballgown, DESeq2, RUnit, cowplot, Rfast, zenith, statmod, BiocGenerics, r2glmm, readr
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-aod
     - r-base
-    - r-doparallel
-    - r-foreach
+    - r-corpcor
+    - r-fancova
     - r-ggplot2
     - r-gplots
     - r-iterators
-    - 'r-lme4 >=1.1-10'
+    - 'r-lme4 >=1.1.33'
     - r-lmertest
     - r-mass
     - 'r-matrix >=1.4.0'
+    - r-matrixstats
     - 'r-pbkrtest >=0.4-4'
-    - r-progress
     - r-rdpack
-    - 'r-remacor >=0.0.11'
+    - 'r-remacor >=0.0.15'
     - r-reshape2
     - r-rhpcblasctl
     - r-rlang
     - r-scales
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-aod
     - r-base
-    - r-doparallel
-    - r-foreach
+    - r-corpcor
+    - r-fancova
     - r-ggplot2
     - r-gplots
     - r-iterators
-    - 'r-lme4 >=1.1-10'
+    - 'r-lme4 >=1.1.33'
     - r-lmertest
     - r-mass
     - 'r-matrix >=1.4.0'
+    - r-matrixstats
     - 'r-pbkrtest >=0.4-4'
-    - r-progress
     - r-rdpack
-    - 'r-remacor >=0.0.11'
+    - 'r-remacor >=0.0.15'
     - r-reshape2
     - r-rhpcblasctl
     - r-rlang
diff --git a/recipes/bioconductor-variantannotation/meta.yaml b/recipes/bioconductor-variantannotation/meta.yaml
index 9751715d5559b..009efb72b17ce 100644
--- a/recipes/bioconductor-variantannotation/meta.yaml
+++ b/recipes/bioconductor-variantannotation/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.1" %}
 {% set name = "VariantAnnotation" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,55 +11,56 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d297f17e9369a4e04d41b1fa86535f4c
+  md5: 39b6f4907fe37495a903c338e6d4cc73
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
-# Suggests: RUnit, AnnotationHub, BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, SNPlocs.Hsapiens.dbSNP144.GRCh37, SIFT.Hsapiens.dbSNP132, SIFT.Hsapiens.dbSNP137, PolyPhen.Hsapiens.dbSNP131, snpStats, ggplot2, BiocStyle
+  run_exports: '{{ pin_subpackage("bioconductor-variantannotation", max_pin="x.x") }}'
+# Suggests: RUnit, AnnotationHub, BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, SNPlocs.Hsapiens.dbSNP144.GRCh37, SIFT.Hsapiens.dbSNP132, SIFT.Hsapiens.dbSNP137, PolyPhen.Hsapiens.dbSNP131, snpStats, ggplot2, BiocStyle, knitr
 # SystemRequirements: GNU make
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-dbi
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-matrixgenerics >=1.12.0,<1.13.0'
-    - 'bioconductor-rhtslib >=2.2.0,<2.3.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-matrixgenerics >=1.14.0,<1.15.0'
+    - 'bioconductor-rhtslib >=2.4.0,<2.5.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - r-dbi
   build:
@@ -74,6 +75,8 @@ about:
   summary: 'Annotation of Genetic Variants'
   description: 'Annotate variants, compute amino acid coding changes, predict coding outcomes.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:variantannotation
   parent_recipe:
diff --git a/recipes/bioconductor-variantexperiment/meta.yaml b/recipes/bioconductor-variantexperiment/meta.yaml
index e0b33f5de1b02..d996d1d7f6948 100644
--- a/recipes/bioconductor-variantexperiment/meta.yaml
+++ b/recipes/bioconductor-variantexperiment/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "VariantExperiment" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,40 +11,41 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 307ba761619ec2eedb365f83b1e5950f
+  md5: cfa81c58331066ea4f23ce2ba29fa114
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-variantexperiment", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, knitr, rmarkdown, markdown, BiocStyle
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayeddataframe >=1.16.0,<1.17.0'
-    - 'bioconductor-gdsarray >=1.20.0,<1.21.0'
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-seqarray >=1.40.0,<1.41.0'
-    - 'bioconductor-snprelate >=1.34.0,<1.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayeddataframe >=1.18.0,<1.19.0'
+    - 'bioconductor-gdsarray >=1.22.0,<1.23.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-seqarray >=1.42.0,<1.43.0'
+    - 'bioconductor-snprelate >=1.36.0,<1.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayeddataframe >=1.16.0,<1.17.0'
-    - 'bioconductor-gdsarray >=1.20.0,<1.21.0'
-    - 'bioconductor-gdsfmt >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-seqarray >=1.40.0,<1.41.0'
-    - 'bioconductor-snprelate >=1.34.0,<1.35.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayeddataframe >=1.18.0,<1.19.0'
+    - 'bioconductor-gdsarray >=1.22.0,<1.23.0'
+    - 'bioconductor-gdsfmt >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-seqarray >=1.42.0,<1.43.0'
+    - 'bioconductor-snprelate >=1.36.0,<1.37.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-variantfiltering/meta.yaml b/recipes/bioconductor-variantfiltering/meta.yaml
index 7d7cc657acfcc..339238b836f34 100644
--- a/recipes/bioconductor-variantfiltering/meta.yaml
+++ b/recipes/bioconductor-variantfiltering/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.1" %}
+{% set version = "1.38.0" %}
 {% set name = "VariantFiltering" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a5b2f20003b47121950dfbb60c9e95a8
+  md5: af4ddac4cfb857eea4db9309da6de07d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-variantfiltering", max_pin="x.x") }}'
 # Suggests: RUnit, BiocStyle, org.Hs.eg.db, BSgenome.Hsapiens.1000genomes.hs37d5, TxDb.Hsapiens.UCSC.hg19.knownGene, SNPlocs.Hsapiens.dbSNP144.GRCh37, MafDb.1Kgenomes.phase1.hs37d5, phastCons100way.UCSC.hg19, PolyPhen.Hsapiens.dbSNP131, SIFT.Hsapiens.dbSNP137
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-dt
     - r-shiny
@@ -48,25 +49,25 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicscores >=2.12.0,<2.13.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-gviz >=1.44.0,<1.45.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rbgl >=1.76.0,<1.77.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
-    - 'bioconductor-xvector >=0.40.0,<0.41.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicscores >=2.14.0,<2.15.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-gviz >=1.46.0,<1.47.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rbgl >=1.78.0,<1.79.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
+    - 'bioconductor-xvector >=0.42.0,<0.43.0'
     - r-base
     - r-dt
     - r-shiny
diff --git a/recipes/bioconductor-varianttools/meta.yaml b/recipes/bioconductor-varianttools/meta.yaml
index 42cd6b757219b..6a504d7d03da0 100644
--- a/recipes/bioconductor-varianttools/meta.yaml
+++ b/recipes/bioconductor-varianttools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.42.0" %}
+{% set version = "1.44.0" %}
 {% set name = "VariantTools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,45 +11,46 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2f6efd941310bd834bc9071454c65d5e
+  md5: 34afccb56ff143a33019bdd8f2e356ca
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-varianttools", max_pin="x.x") }}'
   noarch: generic
-# Suggests: RUnit, LungCancerLines (>= 0.0.6), RBGL, graph, gmapR (>= 1.21.3)
+# Suggests: RUnit, LungCancerLines (>= 0.0.6), RBGL, graph, gmapR (>= 1.21.3), TxDb.Hsapiens.UCSC.hg19.knownGene
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-matrix
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-matrix
 test:
diff --git a/recipes/bioconductor-varianttoolsdata/meta.yaml b/recipes/bioconductor-varianttoolsdata/meta.yaml
index 26e84b603fd3e..a8a952360d6fc 100644
--- a/recipes/bioconductor-varianttoolsdata/meta.yaml
+++ b/recipes/bioconductor-varianttoolsdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "VariantToolsData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: abaad839d98a3c855cac80bd443fa9b6
+  md5: a85757ce237b03b0480f01488a78879b
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-varianttoolsdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: VariantTools (>= 1.3.4), gmapR (>= 1.3.3), BiocStyle
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-varianttoolsdata/post-link.sh b/recipes/bioconductor-varianttoolsdata/post-link.sh
index 9ff9ab2726d17..7c1ae1c238049 100644
--- a/recipes/bioconductor-varianttoolsdata/post-link.sh
+++ b/recipes/bioconductor-varianttoolsdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "varianttoolsdata-1.24.0"
+installBiocDataPackage.sh "varianttoolsdata-1.26.0"
diff --git a/recipes/bioconductor-vasp/meta.yaml b/recipes/bioconductor-vasp/meta.yaml
index 0d8a475a7222e..b3e673476385f 100644
--- a/recipes/bioconductor-vasp/meta.yaml
+++ b/recipes/bioconductor-vasp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "VaSP" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 1c9272543d5387f9619fee22096af873
+  md5: 5fddc833bc7dd84dfb16e030fe966cd3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-vasp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-ballgown >=2.32.0,<2.33.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-ballgown >=2.34.0,<2.35.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cluster
     - r-matrixstats
   run:
-    - 'bioconductor-ballgown >=2.32.0,<2.33.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-ballgown >=2.34.0,<2.35.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cluster
     - r-matrixstats
diff --git a/recipes/bioconductor-vbmp/meta.yaml b/recipes/bioconductor-vbmp/meta.yaml
index d0ae8c93023a7..ce99b5aa8630f 100644
--- a/recipes/bioconductor-vbmp/meta.yaml
+++ b/recipes/bioconductor-vbmp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.68.0" %}
+{% set version = "1.70.0" %}
 {% set name = "vbmp" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: bbe85861887e0d02f6ab57203dfac89e
+  md5: b7d2a0a9950dd7ecdbcea5ffdfbd853c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-vbmp", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biobase (>= 2.5.5), statmod
 requirements:
diff --git a/recipes/bioconductor-vcfarray/meta.yaml b/recipes/bioconductor-vcfarray/meta.yaml
index 5b3b0986decad..b97fe14953639 100644
--- a/recipes/bioconductor-vcfarray/meta.yaml
+++ b/recipes/bioconductor-vcfarray/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "VCFArray" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,32 +11,33 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6ed57985f5b6fcd3e8221e75ae29ca65
+  md5: 0e101fbb3c6c6b57d792527a6c720654
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-vcfarray", max_pin="x.x") }}'
   noarch: generic
 # Suggests: SeqArray, BiocStyle, BiocManager, testthat, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomicfiles >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomicfiles >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomicfiles >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomicfiles >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
 test:
   commands:
diff --git a/recipes/bioconductor-vdjdive/meta.yaml b/recipes/bioconductor-vdjdive/meta.yaml
index b0ff3da36ebdf..9f4d20bf8610f 100644
--- a/recipes/bioconductor-vdjdive/meta.yaml
+++ b/recipes/bioconductor-vdjdive/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "VDJdive" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,43 +11,47 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4900fdc58bbcb9fd6d36bf12379f671a
+  md5: 938051376344953e02e510f65d156939
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
-  noarch: generic
+  run_exports: '{{ pin_subpackage("bioconductor-vdjdive", max_pin="x.x") }}'
 # Suggests: breakaway, covr, knitr, rmarkdown, testthat, BiocStyle
 requirements:
   host:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cowplot
     - r-ggplot2
     - r-gridextra
     - r-matrix
     - r-rcolorbrewer
-    - r-reticulate
+    - r-rcpp
+    - libblas
+    - liblapack
   run:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cowplot
     - r-ggplot2
     - r-gridextra
     - r-matrix
     - r-rcolorbrewer
-    - r-reticulate
+    - r-rcpp
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - make
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-vectrapolarisdata/meta.yaml b/recipes/bioconductor-vectrapolarisdata/meta.yaml
index 1a584263921ac..5c6b9f5915e33 100644
--- a/recipes/bioconductor-vectrapolarisdata/meta.yaml
+++ b/recipes/bioconductor-vectrapolarisdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "VectraPolarisData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f427b5860f7e3498064deabff0328263
+  md5: ea2006b85e374e76fbd70ca8b0819072
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-vectrapolarisdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, dplyr
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-vectrapolarisdata/post-link.sh b/recipes/bioconductor-vectrapolarisdata/post-link.sh
index 16113665d8f15..2f937fb860681 100644
--- a/recipes/bioconductor-vectrapolarisdata/post-link.sh
+++ b/recipes/bioconductor-vectrapolarisdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "vectrapolarisdata-1.4.0"
+installBiocDataPackage.sh "vectrapolarisdata-1.6.0"
diff --git a/recipes/bioconductor-vegamc/meta.yaml b/recipes/bioconductor-vegamc/meta.yaml
index 7c66f7ec08948..d21a2211e6724 100644
--- a/recipes/bioconductor-vegamc/meta.yaml
+++ b/recipes/bioconductor-vegamc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.38.0" %}
+{% set version = "3.40.0" %}
 {% set name = "VegaMC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 27fb05dee200093e81b0ad296ef9ce50
+  md5: 0e02ae3375b7bed5ca1ed7011b60f180
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-vegamc", max_pin="x.x") }}'
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
     - r-base
   build:
     - {{ compiler('c') }}
diff --git a/recipes/bioconductor-velociraptor/meta.yaml b/recipes/bioconductor-velociraptor/meta.yaml
index 9cff79fb403b4..85b401a821df5 100644
--- a/recipes/bioconductor-velociraptor/meta.yaml
+++ b/recipes/bioconductor-velociraptor/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "velociraptor" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,40 +11,41 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 725af79edbf1758273558a988c346605
+  md5: d2c16e280b1957ef3989e5d02f4f0b5d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-velociraptor", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, testthat, knitr, rmarkdown, pkgdown, scran, scater, scRNAseq, Rtsne, graphics, grDevices, ggplot2, cowplot, GGally, patchwork, metR
 requirements:
   host:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-zellkonverter >=1.10.0,<1.11.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-zellkonverter >=1.12.0,<1.13.0'
     - r-base
     - r-matrix
     - r-reticulate
   run:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-biocsingular >=1.16.0,<1.17.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-scuttle >=1.10.0,<1.11.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-zellkonverter >=1.10.0,<1.11.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-biocsingular >=1.18.0,<1.19.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-scuttle >=1.12.0,<1.13.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-zellkonverter >=1.12.0,<1.13.0'
     - r-base
     - r-matrix
     - r-reticulate
diff --git a/recipes/bioconductor-veloviz/meta.yaml b/recipes/bioconductor-veloviz/meta.yaml
index dc09829f4b3ff..8fa3402c305e9 100644
--- a/recipes/bioconductor-veloviz/meta.yaml
+++ b/recipes/bioconductor-veloviz/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.6.0" %}
+{% set version = "1.8.0" %}
 {% set name = "veloviz" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 7c3af954c6be66f853f9aaf1a2f03d97
+  md5: 54c6f9e5fd6275be8b999a2c949cf6bb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-veloviz", max_pin="x.x") }}'
 # Suggests: knitr, rmarkdown, testthat
 requirements:
   host:
diff --git a/recipes/bioconductor-venndetail/meta.yaml b/recipes/bioconductor-venndetail/meta.yaml
index 2b46196c5960f..42c138436e3dd 100644
--- a/recipes/bioconductor-venndetail/meta.yaml
+++ b/recipes/bioconductor-venndetail/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "VennDetail" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2da7c3ccb316ab6914812bedd8f351a5
+  md5: be9c3506e9707fe42642ea413c0873a6
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-venndetail", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, markdown
 requirements:
diff --git a/recipes/bioconductor-verso/meta.yaml b/recipes/bioconductor-verso/meta.yaml
index 359162175c5a3..f142090d335ed 100644
--- a/recipes/bioconductor-verso/meta.yaml
+++ b/recipes/bioconductor-verso/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "VERSO" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: b7cc88c9858954443ebd083f066aac93
+  md5: dcc0220c3f10bb1efaaa360448547771
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-verso", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics, BiocStyle, testthat, knitr
 requirements:
diff --git a/recipes/bioconductor-vidger/meta.yaml b/recipes/bioconductor-vidger/meta.yaml
index 00d83b649aa7e..6104b533f8e4e 100644
--- a/recipes/bioconductor-vidger/meta.yaml
+++ b/recipes/bioconductor-vidger/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "vidger" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: d2674cb15af21919dfd378d5fa4ad4aa
+  md5: 01029a545153064095a804a7e9093231
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-vidger", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, testthat
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggally
     - r-ggplot2
@@ -35,10 +36,10 @@ requirements:
     - r-scales
     - r-tidyr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggally
     - r-ggplot2
diff --git a/recipes/bioconductor-viper/meta.yaml b/recipes/bioconductor-viper/meta.yaml
index 1d91ca6cb6844..d7cc28cd92f69 100644
--- a/recipes/bioconductor-viper/meta.yaml
+++ b/recipes/bioconductor-viper/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.34.0" %}
+{% set version = "1.36.0" %}
 {% set name = "viper" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 68e8e97c7b733610c09e2938f9c1ac42
+  md5: 0d7f13a212bc6fc5d7cf2213a1bfbdb0
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-viper", max_pin="x.x") }}'
   noarch: generic
 # Suggests: bcellViper
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-e1071
     - r-kernsmooth
     - r-mixtools
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - r-e1071
     - r-kernsmooth
diff --git a/recipes/bioconductor-viseago/meta.yaml b/recipes/bioconductor-viseago/meta.yaml
index af9d0935c9c09..0ce17ff2718bd 100644
--- a/recipes/bioconductor-viseago/meta.yaml
+++ b/recipes/bioconductor-viseago/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "ViSEAGO" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4ef6ab35f2558111c341ddabf7d69b3d
+  md5: 90f43624392275cbfbcd026e323769b9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-viseago", max_pin="x.x") }}'
   noarch: generic
 # Suggests: htmltools, org.Mm.eg.db, limma, Rgraphviz, BiocStyle, knitr, rmarkdown, corrplot, remotes, BiocManager
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationforge >=1.42.0,<1.43.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-gosemsim >=2.26.0,<2.27.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationforge >=1.44.0,<1.45.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-gosemsim >=2.28.0,<2.29.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - r-data.table
     - r-dendextend
@@ -45,13 +46,13 @@ requirements:
     - r-scales
     - r-upsetr
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-annotationforge >=1.42.0,<1.43.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-fgsea >=1.26.0,<1.27.0'
-    - 'bioconductor-go.db >=3.17.0,<3.18.0'
-    - 'bioconductor-gosemsim >=2.26.0,<2.27.0'
-    - 'bioconductor-topgo >=2.52.0,<2.53.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-annotationforge >=1.44.0,<1.45.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-fgsea >=1.28.0,<1.29.0'
+    - 'bioconductor-go.db >=3.18.0,<3.19.0'
+    - 'bioconductor-gosemsim >=2.28.0,<2.29.0'
+    - 'bioconductor-topgo >=2.54.0,<2.55.0'
     - r-base
     - r-data.table
     - r-dendextend
diff --git a/recipes/bioconductor-visse/meta.yaml b/recipes/bioconductor-visse/meta.yaml
index 4d72ac521d56d..f9e749668920d 100644
--- a/recipes/bioconductor-visse/meta.yaml
+++ b/recipes/bioconductor-visse/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "vissE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c3b75cc7ccad5e8341533a72d2c5449a
+  md5: 1c5018fd43f416ebc2d035a143877154
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-visse", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, org.Hs.eg.db, org.Mm.eg.db, patchwork, singscore, knitr, rmarkdown, prettydoc, BiocStyle, pkgdown, covr
 requirements:
   host:
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-msigdb >=1.8.0,<1.9.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-msigdb >=1.10.0,<1.11.0'
     - r-base
     - r-ggforce
     - r-ggplot2
@@ -39,8 +40,8 @@ requirements:
     - r-tidygraph
     - r-tm
   run:
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-msigdb >=1.8.0,<1.9.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-msigdb >=1.10.0,<1.11.0'
     - r-base
     - r-ggforce
     - r-ggplot2
diff --git a/recipes/bioconductor-vitisviniferacdf/meta.yaml b/recipes/bioconductor-vitisviniferacdf/meta.yaml
index 618b415f6dceb..700763f7b9e4a 100644
--- a/recipes/bioconductor-vitisviniferacdf/meta.yaml
+++ b/recipes/bioconductor-vitisviniferacdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "vitisviniferacdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 8eb491f3ffa3ff0814f5c155787ae160
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-vitisviniferacdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-vitisviniferaprobe/meta.yaml b/recipes/bioconductor-vitisviniferaprobe/meta.yaml
index 78c017c3278e5..6c147fb71d4de 100644
--- a/recipes/bioconductor-vitisviniferaprobe/meta.yaml
+++ b/recipes/bioconductor-vitisviniferaprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "vitisviniferaprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 386c0d5e37896d073ac20970e88b3160
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-vitisviniferaprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-voyager/meta.yaml b/recipes/bioconductor-voyager/meta.yaml
index f18eed13d0105..805d9605955ad 100644
--- a/recipes/bioconductor-voyager/meta.yaml
+++ b/recipes/bioconductor-voyager/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.3" %}
+{% set version = "1.4.0" %}
 {% set name = "Voyager" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,29 +11,30 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: af8b62438ee17b2a3898ef9ee429a619
+  md5: 1cc32e63cf1c410d82c2cd1a26f9f929
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-voyager", max_pin="x.x") }}'
   noarch: generic
-# Suggests: adespatial, automap, BiocSingular, BiocStyle, cowplot, ExperimentHub, ggh4x, gstat, hexbin, knitr, pheatmap, rhdf5, rmarkdown, scater, scattermore, scran, sfarrow, SFEData, testthat (>= 3.0.0), vdiffr, vroom
+# Suggests: automap, BiocSingular, BiocStyle, cowplot, ExperimentHub, ggh4x, gstat, hexbin, knitr, pheatmap, rhdf5, rmarkdown, scater, scattermore, scran, sfarrow, SFEData, testthat (>= 3.0.0), vdiffr, vroom
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-bluster >=1.10.0,<1.11.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-sparsematrixstats >=1.12.0,<1.13.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-spatialfeatureexperiment >=1.2.0,<1.3.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-bluster >=1.12.0,<1.13.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-spatialfeatureexperiment >=1.4.0,<1.5.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggnewscale
     - 'r-ggplot2 >=3.4.0'
     - r-lifecycle
     - r-matrix
+    - r-matrixstats
     - r-patchwork
     - r-rlang
     - r-rspectra
@@ -43,19 +44,19 @@ requirements:
     - r-spdep
     - r-terra
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-bluster >=1.10.0,<1.11.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-sparsematrixstats >=1.12.0,<1.13.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
-    - 'bioconductor-spatialfeatureexperiment >=1.2.0,<1.3.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-bluster >=1.12.0,<1.13.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
+    - 'bioconductor-spatialfeatureexperiment >=1.4.0,<1.5.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-ggnewscale
     - 'r-ggplot2 >=3.4.0'
     - r-lifecycle
     - r-matrix
+    - r-matrixstats
     - r-patchwork
     - r-rlang
     - r-rspectra
diff --git a/recipes/bioconductor-vplotr/meta.yaml b/recipes/bioconductor-vplotr/meta.yaml
index c326702e06edc..60b10ff4e2b2e 100644
--- a/recipes/bioconductor-vplotr/meta.yaml
+++ b/recipes/bioconductor-vplotr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.1" %}
 {% set name = "VplotR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a35b84246031a8a91934c6b0144d1c0d
+  md5: 91af0fd39cd72be94b7f5d674d9e494f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-vplotr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: GenomicFeatures, TxDb.Scerevisiae.UCSC.sacCer3.sgdGene, testthat, covr, knitr, rmarkdown, pkgdown
 requirements:
   host:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cowplot
     - r-ggplot2
@@ -35,12 +36,12 @@ requirements:
     - r-reshape2
     - r-zoo
   run:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-cowplot
     - r-ggplot2
diff --git a/recipes/bioconductor-vsclust/meta.yaml b/recipes/bioconductor-vsclust/meta.yaml
index f256165c67c44..7ba0555dd39b9 100644
--- a/recipes/bioconductor-vsclust/meta.yaml
+++ b/recipes/bioconductor-vsclust/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "vsclust" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: aa4f4df8fd8e0a96d3bce256e041f479
+  md5: 0c492a6d65d0b230211a0f95706b51a4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-vsclust", max_pin="x.x") }}'
 # Suggests: knitr, yaml, testthat (>= 3.0.0), rmarkdown, BiocStyle, clusterProfiler
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
     - r-matrixstats
     - r-rcpp
@@ -30,9 +31,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
     - r-base
     - r-matrixstats
     - r-rcpp
diff --git a/recipes/bioconductor-vsn/meta.yaml b/recipes/bioconductor-vsn/meta.yaml
index 289e82fa4ce0a..073be9e2252d4 100644
--- a/recipes/bioconductor-vsn/meta.yaml
+++ b/recipes/bioconductor-vsn/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.68.0" %}
+{% set version = "3.70.0" %}
 {% set name = "vsn" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: cc5c43447e41dc37b1132a6407ba298b
+  md5: 1c9484f361b22f76135af5567306f0c6
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-vsn", max_pin="x.x") }}'
 # Suggests: affydata, hgu95av2cdf, BiocStyle, knitr, rmarkdown, dplyr, testthat
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-ggplot2
     - r-lattice
     - libblas
     - liblapack
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-ggplot2
     - r-lattice
@@ -47,6 +48,8 @@ about:
   summary: 'Variance stabilization and calibration for microarray data'
   description: 'The package implements a method for normalising microarray intensities from single- and multiple-color arrays. It can also be used for data from other technologies, as long as they have similar format. The method uses a robust variant of the maximum-likelihood estimator for an additive-multiplicative error model and affine calibration. The model incorporates data calibration step (a.k.a. normalization), a model for the dependence of the variance on the mean intensity and a variance stabilizing data transformation. Differences between transformed intensities are analogous to "normalized log-ratios". However, in contrast to the latter, their variance is independent of the mean, and they are usually more sensitive and specific in detecting differential transcription.'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:vsn
   parent_recipe:
diff --git a/recipes/bioconductor-vtpnet/meta.yaml b/recipes/bioconductor-vtpnet/meta.yaml
index 68ff7ed733dfe..5c0307387b96c 100644
--- a/recipes/bioconductor-vtpnet/meta.yaml
+++ b/recipes/bioconductor-vtpnet/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.40.0" %}
+{% set version = "0.42.0" %}
 {% set name = "vtpnet" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,26 +11,27 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: cf95c0b39cbcd4f227c8b3e03c7d2906
+  md5: a3a08b447e9ce26fafeed6fe2c515e10
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-vtpnet", max_pin="x.x") }}'
   noarch: generic
 # Suggests: MotifDb, VariantAnnotation, Rgraphviz
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-gwascat >=2.32.0,<2.33.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-gwascat >=2.34.0,<2.35.0'
     - r-base
     - r-doparallel
     - r-foreach
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
-    - 'bioconductor-gwascat >=2.32.0,<2.33.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
+    - 'bioconductor-gwascat >=2.34.0,<2.35.0'
     - r-base
     - r-doparallel
     - r-foreach
diff --git a/recipes/bioconductor-vulcan/meta.yaml b/recipes/bioconductor-vulcan/meta.yaml
index e0d4a0fa3f9f5..37d48d05d6a20 100644
--- a/recipes/bioconductor-vulcan/meta.yaml
+++ b/recipes/bioconductor-vulcan/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "vulcan" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: f526cacf3cf264b40ddb4f476a863e2c
+  md5: 0e0bf7a1e9b866d535489e7c37f2e19d
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-vulcan", max_pin="x.x") }}'
   noarch: generic
 # Suggests: vulcandata
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-chippeakanno >=3.34.0,<3.35.0'
-    - 'bioconductor-csaw >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-diffbind >=3.10.0,<3.11.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-chippeakanno >=3.36.0,<3.37.0'
+    - 'bioconductor-csaw >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-diffbind >=3.12.0,<3.13.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-viper >=1.34.0,<1.35.0'
+    - 'bioconductor-viper >=1.36.0,<1.37.0'
     - r-base
     - r-catools
     - r-gplots
@@ -37,15 +38,15 @@ requirements:
     - r-wordcloud
     - r-zoo
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-chippeakanno >=3.34.0,<3.35.0'
-    - 'bioconductor-csaw >=1.34.0,<1.35.0'
-    - 'bioconductor-deseq2 >=1.40.0,<1.41.0'
-    - 'bioconductor-diffbind >=3.10.0,<3.11.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-chippeakanno >=3.36.0,<3.37.0'
+    - 'bioconductor-csaw >=1.36.0,<1.37.0'
+    - 'bioconductor-deseq2 >=1.42.0,<1.43.0'
+    - 'bioconductor-diffbind >=3.12.0,<3.13.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
-    - 'bioconductor-viper >=1.34.0,<1.35.0'
+    - 'bioconductor-viper >=1.36.0,<1.37.0'
     - r-base
     - r-catools
     - r-gplots
diff --git a/recipes/bioconductor-vulcandata/meta.yaml b/recipes/bioconductor-vulcandata/meta.yaml
index c83ee258ad24a..c63ea516eec1c 100644
--- a/recipes/bioconductor-vulcandata/meta.yaml
+++ b/recipes/bioconductor-vulcandata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "vulcandata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: e51d04a9825be5fdb9591377095a0da9
+  md5: cd95ea7ac7f2b9edfd46c1ffccb7c3c1
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-vulcandata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-vulcandata/post-link.sh b/recipes/bioconductor-vulcandata/post-link.sh
index 9bf717d9b7e82..29950d9bb1d51 100644
--- a/recipes/bioconductor-vulcandata/post-link.sh
+++ b/recipes/bioconductor-vulcandata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "vulcandata-1.22.0"
+installBiocDataPackage.sh "vulcandata-1.24.0"
diff --git a/recipes/bioconductor-waddr/meta.yaml b/recipes/bioconductor-waddr/meta.yaml
index 9d0151af7f721..c7bc5ff14d5ed 100644
--- a/recipes/bioconductor-waddr/meta.yaml
+++ b/recipes/bioconductor-waddr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.14.0" %}
+{% set version = "1.16.0" %}
 {% set name = "waddR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7a4dd18e19d305d25e578016a82391c7
+  md5: 97a692c918d531e3d872dc17141cd112
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-waddr", max_pin="x.x") }}'
 # Suggests: knitr, devtools, testthat, roxygen2, rprojroot, rmarkdown, scater
 requirements:
   host:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - 'r-arm >=1.10-1'
     - r-base
     - r-eva
@@ -31,9 +32,9 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocfilecache >=2.8.0,<2.9.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
+    - 'bioconductor-biocfilecache >=2.10.0,<2.11.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
     - 'r-arm >=1.10-1'
     - r-base
     - r-eva
diff --git a/recipes/bioconductor-watermelon/meta.yaml b/recipes/bioconductor-watermelon/meta.yaml
index c52d665c14f60..b6fb1b65082bf 100644
--- a/recipes/bioconductor-watermelon/meta.yaml
+++ b/recipes/bioconductor-watermelon/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.6.0" %}
+{% set version = "2.8.0" %}
 {% set name = "wateRmelon" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f4828a18835a1a56fde8a155a51452e7
+  md5: dd08402958a5cc50170669a5f17e44f6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-watermelon", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RPMM, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, BiocStyle, knitr, rmarkdown, IlluminaHumanMethylationEPICmanifest, irlba, FlowSorted.Blood.EPIC, FlowSorted.Blood.450k, preprocessCore
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0'
-    - 'bioconductor-illuminaio >=0.42.0,<0.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
-    - 'bioconductor-methylumi >=2.46.0,<2.47.0'
-    - 'bioconductor-roc >=1.76.0,<1.77.0'
+    - 'bioconductor-illuminaio >=0.44.0,<0.45.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
+    - 'bioconductor-methylumi >=2.48.0,<2.49.0'
+    - 'bioconductor-roc >=1.78.0,<1.79.0'
     - r-base
     - r-matrixstats
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - 'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0'
-    - 'bioconductor-illuminaio >=0.42.0,<0.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-lumi >=2.52.0,<2.53.0'
-    - 'bioconductor-methylumi >=2.46.0,<2.47.0'
-    - 'bioconductor-roc >=1.76.0,<1.77.0'
+    - 'bioconductor-illuminaio >=0.44.0,<0.45.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-lumi >=2.54.0,<2.55.0'
+    - 'bioconductor-methylumi >=2.48.0,<2.49.0'
+    - 'bioconductor-roc >=1.78.0,<1.79.0'
     - r-base
     - r-matrixstats
 test:
diff --git a/recipes/bioconductor-wavcluster/meta.yaml b/recipes/bioconductor-wavcluster/meta.yaml
index 9b019e5241b76..db62a8f56c5cf 100644
--- a/recipes/bioconductor-wavcluster/meta.yaml
+++ b/recipes/bioconductor-wavcluster/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.34.0" %}
+{% set version = "2.36.0" %}
 {% set name = "wavClusteR" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 2894c6e0dbc3d6d968cf63dad83ab8e8
+  md5: 9177c657b31b1abaac94079e658a9c18
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-wavcluster", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-foreach
     - r-ggplot2
@@ -37,14 +38,14 @@ requirements:
     - r-seqinr
     - r-stringr
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-genomicfeatures >=1.52.0,<1.53.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-genomicfeatures >=1.54.0,<1.55.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-foreach
     - r-ggplot2
diff --git a/recipes/bioconductor-weaver/meta.yaml b/recipes/bioconductor-weaver/meta.yaml
index 735940fb2a99c..4eac9e85fb718 100644
--- a/recipes/bioconductor-weaver/meta.yaml
+++ b/recipes/bioconductor-weaver/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.66.0" %}
+{% set version = "1.68.0" %}
 {% set name = "weaver" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 88b2dbb130fe48487b9f642f97475a3f
+  md5: 629d19681872923f14b50543d833c1ba
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-weaver", max_pin="x.x") }}'
   noarch: generic
 # Suggests: codetools
 requirements:
diff --git a/recipes/bioconductor-webbioc/meta.yaml b/recipes/bioconductor-webbioc/meta.yaml
index 652c70188c9c3..2186052bfbd19 100644
--- a/recipes/bioconductor-webbioc/meta.yaml
+++ b/recipes/bioconductor-webbioc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.72.0" %}
+{% set version = "1.74.0" %}
 {% set name = "webbioc" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,33 +11,34 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: b1f539ec35de93f12f90c5432c7d30ea
+  md5: 59774accefb60098cdf15cfcd1cda508
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-webbioc", max_pin="x.x") }}'
   noarch: generic
 # SystemRequirements: Unix, Perl (>= 5.6.0), Netpbm
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-annaffy >=1.72.0,<1.73.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-gcrma >=2.72.0,<2.73.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-annaffy >=1.74.0,<1.75.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-gcrma >=2.74.0,<2.75.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-base
     - r-biocmanager
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
-    - 'bioconductor-annaffy >=1.72.0,<1.73.0'
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-gcrma >=2.72.0,<2.73.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
-    - 'bioconductor-qvalue >=2.32.0,<2.33.0'
-    - 'bioconductor-vsn >=3.68.0,<3.69.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
+    - 'bioconductor-annaffy >=1.74.0,<1.75.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-gcrma >=2.74.0,<2.75.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-qvalue >=2.34.0,<2.35.0'
+    - 'bioconductor-vsn >=3.70.0,<3.71.0'
     - r-base
     - r-biocmanager
 test:
diff --git a/recipes/bioconductor-weberdivechalcdata/meta.yaml b/recipes/bioconductor-weberdivechalcdata/meta.yaml
index 44c9361352f19..c4b66627150c2 100644
--- a/recipes/bioconductor-weberdivechalcdata/meta.yaml
+++ b/recipes/bioconductor-weberdivechalcdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %}
+{% set version = "1.4.0" %}
 {% set name = "WeberDivechaLCdata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f7b4867dc3ce8463050bd897209d00c4
+  md5: 3b75c693f86ed228e2b7816872cfe4b7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-weberdivechalcdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-spatialexperiment >=1.10.0,<1.11.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-spatialexperiment >=1.12.0,<1.13.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-weberdivechalcdata/post-link.sh b/recipes/bioconductor-weberdivechalcdata/post-link.sh
index cad6159f43b41..7776be0617620 100644
--- a/recipes/bioconductor-weberdivechalcdata/post-link.sh
+++ b/recipes/bioconductor-weberdivechalcdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "weberdivechalcdata-1.2.0"
+installBiocDataPackage.sh "weberdivechalcdata-1.4.0"
diff --git a/recipes/bioconductor-weitrix/meta.yaml b/recipes/bioconductor-weitrix/meta.yaml
index 9d4a0c43c50ef..eb99b763485c2 100644
--- a/recipes/bioconductor-weitrix/meta.yaml
+++ b/recipes/bioconductor-weitrix/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "weitrix" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c32dce4e0730d66dd8757c78aadc44ad
+  md5: 101d61858d3d388a1396212f7ef5332e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-weitrix", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, BiocStyle, tidyverse, airway, edgeR, EnsDb.Hsapiens.v86, org.Sc.sgd.db, AnnotationDbi, ComplexHeatmap, patchwork, testthat (>= 2.1.0)
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-topconfects >=1.16.0,<1.17.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-topconfects >=1.18.0,<1.19.0'
     - r-assertthat
     - r-base
     - r-ckmeans.1d.dp
@@ -41,14 +42,14 @@ requirements:
     - r-rlang
     - r-scales
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-delayedmatrixstats >=1.22.0,<1.23.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
-    - 'bioconductor-topconfects >=1.16.0,<1.17.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-delayedmatrixstats >=1.24.0,<1.25.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
+    - 'bioconductor-topconfects >=1.18.0,<1.19.0'
     - r-assertthat
     - r-base
     - r-ckmeans.1d.dp
diff --git a/recipes/bioconductor-wes.1kg.wugsc/meta.yaml b/recipes/bioconductor-wes.1kg.wugsc/meta.yaml
index 5f537e13c5d7b..755106b9959f2 100644
--- a/recipes/bioconductor-wes.1kg.wugsc/meta.yaml
+++ b/recipes/bioconductor-wes.1kg.wugsc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.32.0" %}
+{% set version = "1.34.0" %}
 {% set name = "WES.1KG.WUGSC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 4037de5e802a16f5aae76eca264b0be7
+  md5: a0a3d230e27342090638ec4868756e5a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-wes.1kg.wugsc", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-wes.1kg.wugsc/post-link.sh b/recipes/bioconductor-wes.1kg.wugsc/post-link.sh
index ac9b442ef44fe..379916e93aea6 100644
--- a/recipes/bioconductor-wes.1kg.wugsc/post-link.sh
+++ b/recipes/bioconductor-wes.1kg.wugsc/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "wes.1kg.wugsc-1.32.0"
+installBiocDataPackage.sh "wes.1kg.wugsc-1.34.0"
diff --git a/recipes/bioconductor-wgsmapp/meta.yaml b/recipes/bioconductor-wgsmapp/meta.yaml
index 5761c6cc97e9d..004433757f803 100644
--- a/recipes/bioconductor-wgsmapp/meta.yaml
+++ b/recipes/bioconductor-wgsmapp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.12.0" %}
+{% set version = "1.14.0" %}
 {% set name = "WGSmapp" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 7e4b497bab5e73445e19a84f86e40888
+  md5: dfc3f5a82d532551e2d6c21b11c99566
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-wgsmapp", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
   run:
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-wgsmapp/post-link.sh b/recipes/bioconductor-wgsmapp/post-link.sh
index fa5f5b4d3d4ff..72a7d5958caa4 100644
--- a/recipes/bioconductor-wgsmapp/post-link.sh
+++ b/recipes/bioconductor-wgsmapp/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "wgsmapp-1.12.0"
+installBiocDataPackage.sh "wgsmapp-1.14.0"
diff --git a/recipes/bioconductor-wheatcdf/meta.yaml b/recipes/bioconductor-wheatcdf/meta.yaml
index ce66b53e4ba95..e48303b1fdecd 100644
--- a/recipes/bioconductor-wheatcdf/meta.yaml
+++ b/recipes/bioconductor-wheatcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "wheatcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 0abeeeb9700b8d93a1a83769bdd8480f
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-wheatcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-wheatprobe/meta.yaml b/recipes/bioconductor-wheatprobe/meta.yaml
index f662ba5fe5d20..a8a7d02b42958 100644
--- a/recipes/bioconductor-wheatprobe/meta.yaml
+++ b/recipes/bioconductor-wheatprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "wheatprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: b602d5050239850515be9dce12286360
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-wheatprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-widgettools/meta.yaml b/recipes/bioconductor-widgettools/meta.yaml
index a649ad5806073..9bd762908f52b 100644
--- a/recipes/bioconductor-widgettools/meta.yaml
+++ b/recipes/bioconductor-widgettools/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.78.0" %}
+{% set version = "1.80.0" %}
 {% set name = "widgetTools" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: d5d6e9f2d028392979502b0b07d13cb7
+  md5: bb5358a7e064436aa744ffb098a9c0ec
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-widgettools", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biobase
 requirements:
diff --git a/recipes/bioconductor-wiggleplotr/meta.yaml b/recipes/bioconductor-wiggleplotr/meta.yaml
index 21ba541310356..b8dcd748549bb 100644
--- a/recipes/bioconductor-wiggleplotr/meta.yaml
+++ b/recipes/bioconductor-wiggleplotr/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.24.0" %}
+{% set version = "1.26.0" %}
 {% set name = "wiggleplotr" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,21 +11,22 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 15aa40f6d6b29b4f43f76f818daac0ec
+  md5: 9e05d485ba51bf035918d23e686e60ba
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-wiggleplotr", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, biomaRt, GenomicFeatures, testthat, ensembldb, EnsDb.Hsapiens.v86, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene, AnnotationDbi, AnnotationFilter
 requirements:
   host:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-assertthat
     - r-base
     - r-cowplot
@@ -33,11 +34,11 @@ requirements:
     - 'r-ggplot2 >=2.2.0'
     - r-purrr
   run:
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rtracklayer >=1.60.0,<1.61.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-assertthat
     - r-base
     - r-cowplot
diff --git a/recipes/bioconductor-worm.db0/meta.yaml b/recipes/bioconductor-worm.db0/meta.yaml
index 98bdfb084ad56..18bb7a5e84082 100644
--- a/recipes/bioconductor-worm.db0/meta.yaml
+++ b/recipes/bioconductor-worm.db0/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "worm.db0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 5ab9b7c14dafa60945e528fe7b940d42
+  md5: 67be1277b5ae184558259ac720a5741e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-worm.db0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-worm.db0/post-link.sh b/recipes/bioconductor-worm.db0/post-link.sh
index bbbb7b1411a33..58e6b26a5f6a0 100644
--- a/recipes/bioconductor-worm.db0/post-link.sh
+++ b/recipes/bioconductor-worm.db0/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "worm.db0-3.17.0"
+installBiocDataPackage.sh "worm.db0-3.18.0"
diff --git a/recipes/bioconductor-wpm/meta.yaml b/recipes/bioconductor-wpm/meta.yaml
index 9da297b9934f8..38ed8c9815556 100644
--- a/recipes/bioconductor-wpm/meta.yaml
+++ b/recipes/bioconductor-wpm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.0" %}
+{% set version = "1.12.0" %}
 {% set name = "wpm" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,18 +11,19 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 1c516e008e79b67ff826cf796f4eeced
+  md5: 44df6efb278049a19cefea84cb8a8b64
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-wpm", max_pin="x.x") }}'
   noarch: generic
 # Suggests: MSnbase, testthat, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cli
     - r-config
@@ -39,8 +40,8 @@ requirements:
     - r-shinywidgets
     - r-stringr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cli
     - r-config
diff --git a/recipes/bioconductor-wppi/meta.yaml b/recipes/bioconductor-wppi/meta.yaml
index 7116847631e52..b3d8b9e3382a3 100644
--- a/recipes/bioconductor-wppi/meta.yaml
+++ b/recipes/bioconductor-wppi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "wppi" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 6263659decef0f59841200d8558ec8a8
+  md5: 1de428cfbb93be33d9e71b0415937cd9
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-wppi", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, testthat, rmarkdown
 requirements:
   host:
-    - 'bioconductor-omnipathr >=3.8.0,<3.9.0'
+    - 'bioconductor-omnipathr >=3.10.0,<3.11.0'
     - r-base
     - r-dplyr
     - r-igraph
@@ -35,7 +36,7 @@ requirements:
     - r-tibble
     - r-tidyr
   run:
-    - 'bioconductor-omnipathr >=3.8.0,<3.9.0'
+    - 'bioconductor-omnipathr >=3.10.0,<3.11.0'
     - r-base
     - r-dplyr
     - r-igraph
@@ -57,4 +58,3 @@ about:
   summary: 'Weighting protein-protein interactions'
   description: 'Protein-protein interaction data is essential for omics data analysis and modeling. Database knowledge is general, not specific for cell type, physiological condition or any other context determining which connections are functional and contribute to the signaling. Functional annotations such as Gene Ontology and Human Phenotype Ontology might help to evaluate the relevance of interactions. This package predicts functional relevance of protein-protein interactions based on functional annotations such as Human Protein Ontology and Gene Ontology, and prioritizes genes based on network topology, functional scores and a path search algorithm.'
   license_file: LICENSE
-
diff --git a/recipes/bioconductor-wrench/meta.yaml b/recipes/bioconductor-wrench/meta.yaml
index 6c7b3c52ded7b..8117dd068c109 100644
--- a/recipes/bioconductor-wrench/meta.yaml
+++ b/recipes/bioconductor-wrench/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "Wrench" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c7e30debeed00e428d39c2b65fe51f8b
+  md5: 18e9fb2840f0002f41be3799688e2b1f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-wrench", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, metagenomeSeq, DESeq2, edgeR
 requirements:
   host:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-locfit
     - r-matrixstats
   run:
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
     - r-base
     - r-locfit
     - r-matrixstats
diff --git a/recipes/bioconductor-xcms/meta.yaml b/recipes/bioconductor-xcms/meta.yaml
index 8c2915782fe49..b007033ba5110 100644
--- a/recipes/bioconductor-xcms/meta.yaml
+++ b/recipes/bioconductor-xcms/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.22.0" %}
+{% set version = "4.0.0" %}
 {% set name = "xcms" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,53 +11,60 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 044ad9c66603d6d269746262f72ba146
+  md5: 194314f3a5b94121a4007b58b17182b1
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
-# Suggests: BiocStyle, caTools, knitr (>= 1.1.0), faahKO, msdata (>= 0.25.1), ncdf4, testthat, pander, magrittr, rmarkdown, MALDIquant, pheatmap, Spectra (>= 1.1.17), MsBackendMgf, progress, signal
+  run_exports: '{{ pin_subpackage("bioconductor-xcms", max_pin="x.x") }}'
+# Suggests: BiocStyle, caTools, knitr (>= 1.1.0), faahKO, msdata (>= 0.25.1), ncdf4, testthat, pander, rmarkdown, MALDIquant, pheatmap, MsBackendMgf, MetaboCoreUtils, signal
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-massspecwavelet >=1.66.0,<1.67.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-msfeatures >=1.8.0,<1.9.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-massspecwavelet >=1.68.0,<1.69.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-msexperiment >=1.4.0,<1.5.0'
+    - 'bioconductor-msfeatures >=1.10.0,<1.11.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spectra >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-lattice
     - r-plyr
+    - r-progress
     - r-rann
     - r-rcolorbrewer
     - r-robustbase
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-massspecwavelet >=1.66.0,<1.67.0'
-    - 'bioconductor-mscoreutils >=1.12.0,<1.13.0'
-    - 'bioconductor-msfeatures >=1.8.0,<1.9.0'
-    - 'bioconductor-msnbase >=2.26.0,<2.27.0'
-    - 'bioconductor-multtest >=2.56.0,<2.57.0'
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
-    - 'bioconductor-protgenerics >=1.32.0,<1.33.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-massspecwavelet >=1.68.0,<1.69.0'
+    - 'bioconductor-mscoreutils >=1.14.0,<1.15.0'
+    - 'bioconductor-msexperiment >=1.4.0,<1.5.0'
+    - 'bioconductor-msfeatures >=1.10.0,<1.11.0'
+    - 'bioconductor-msnbase >=2.28.0,<2.29.0'
+    - 'bioconductor-multtest >=2.58.0,<2.59.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
+    - 'bioconductor-protgenerics >=1.34.0,<1.35.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-spectra >=1.12.0,<1.13.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-lattice
     - r-plyr
+    - r-progress
     - r-rann
     - r-rcolorbrewer
     - r-robustbase
@@ -70,8 +77,13 @@ test:
     - '$R -e "library(''{{ name }}'')"'
 about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
-  license: 'GPL (>= 2) + file LICENSE'
+  license: 'GPL-2.0-or-later + file LICENSE'
   summary: 'LC-MS and GC-MS Data Analysis'
   description: 'Framework for processing and visualization of chromatographically separated and single-spectra mass spectral data. Imports from AIA/ANDI NetCDF, mzXML, mzData and mzML files. Preprocesses data for high-throughput, untargeted analyte profiling.'
   license_file: LICENSE
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name|lower }}
diff --git a/recipes/bioconductor-xcore/meta.yaml b/recipes/bioconductor-xcore/meta.yaml
index e84954b6e601d..f83edf02082ee 100644
--- a/recipes/bioconductor-xcore/meta.yaml
+++ b/recipes/bioconductor-xcore/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "xcore" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 5171f950290cc292a4878d982f241fa5
+  md5: 4dd79b63bd7ff46aaa1b84dade889db2
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-xcore", max_pin="x.x") }}'
   noarch: generic
 # Suggests: AnnotationHub (>= 3.0.2), BiocGenerics (>= 0.38.0), BiocParallel (>= 1.28), BiocStyle (>= 2.20.2), data.table (>= 1.14.0), devtools (>= 2.4.2), doParallel (>= 1.0.16), ExperimentHub (>= 2.2.0), knitr (>= 1.37), pheatmap (>= 1.0.12), proxy (>= 0.4.26), ridge (>= 3.0), rmarkdown (>= 2.11), rtracklayer (>= 1.52.0), testthat (>= 3.0.0), usethis (>= 2.0.1), xcoredata
 requirements:
   host:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-foreach >=1.5.1'
     - 'r-glmnet >=4.1.2'
@@ -34,12 +35,12 @@ requirements:
     - 'r-magrittr >=2.0.1'
     - 'r-matrix >=1.3.4'
   run:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-multiassayexperiment >=1.26.0,<1.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-multiassayexperiment >=1.28.0,<1.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - 'r-foreach >=1.5.1'
     - 'r-glmnet >=4.1.2'
diff --git a/recipes/bioconductor-xcoredata/meta.yaml b/recipes/bioconductor-xcoredata/meta.yaml
index 121fd68bbdb97..d095f18812f83 100644
--- a/recipes/bioconductor-xcoredata/meta.yaml
+++ b/recipes/bioconductor-xcoredata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.4.0" %}
+{% set version = "1.6.0" %}
 {% set name = "xcoredata" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 172e8208ccf23b03ead836908e84522a
+  md5: 214626bfcbb5d66445324f6e367142c7
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-xcoredata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocGenerics (>= 0.40.0), data.table (>= 1.14.2), GenomeInfoDb (>= 1.30.0), GenomicRanges (>= 1.46.1), IRanges (>= 2.28.0), knitr (>= 1.37), rmarkdown (>= 2.11), Matrix (>= 1.3.4), stringr (>= 1.4.0), S4Vectors (>= 0.32.3), TxDb.Hsapiens.UCSC.hg38.knownGene (>= 3.14.0), xcore
 requirements:
   host:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
   run:
-    - 'bioconductor-experimenthub >=2.8.0,<2.9.0'
+    - 'bioconductor-experimenthub >=2.10.0,<2.11.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-xcoredata/post-link.sh b/recipes/bioconductor-xcoredata/post-link.sh
index e6dff1b4de2c8..fc698f3463f09 100644
--- a/recipes/bioconductor-xcoredata/post-link.sh
+++ b/recipes/bioconductor-xcoredata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "xcoredata-1.4.0"
+installBiocDataPackage.sh "xcoredata-1.6.0"
diff --git a/recipes/bioconductor-xde/meta.yaml b/recipes/bioconductor-xde/meta.yaml
index 12e69037dc1f4..925ec6e74d9ad 100644
--- a/recipes/bioconductor-xde/meta.yaml
+++ b/recipes/bioconductor-xde/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "2.46.0" %}
+{% set version = "2.48.0" %}
 {% set name = "XDE" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 84d6c574373e0965f6bf5915f9771c11
+  md5: aaf179de92edd3a7105c0fe20254f3d6
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-xde", max_pin="x.x") }}'
 # Suggests: MASS, RUnit
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-genemeta >=1.72.0,<1.73.0'
-    - 'bioconductor-siggenes >=1.74.0,<1.75.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-genemeta >=1.74.0,<1.75.0'
+    - 'bioconductor-siggenes >=1.76.0,<1.77.0'
     - r-base
     - r-gtools
     - r-mvtnorm
@@ -32,11 +33,11 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-genemeta >=1.72.0,<1.73.0'
-    - 'bioconductor-siggenes >=1.74.0,<1.75.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-genemeta >=1.74.0,<1.75.0'
+    - 'bioconductor-siggenes >=1.76.0,<1.77.0'
     - r-base
     - r-gtools
     - r-mvtnorm
diff --git a/recipes/bioconductor-xenopus.db0/meta.yaml b/recipes/bioconductor-xenopus.db0/meta.yaml
index 9d6ae3a8ab3d1..43ceb31511611 100644
--- a/recipes/bioconductor-xenopus.db0/meta.yaml
+++ b/recipes/bioconductor-xenopus.db0/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "xenopus.db0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: cbdcc91045acef0ea9998f965b24dc2e
+  md5: 67b245b456f21672e70fa0690d7e8410
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-xenopus.db0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-xenopus.db0/post-link.sh b/recipes/bioconductor-xenopus.db0/post-link.sh
index bb5200ffd15a8..f0f7cb9144929 100644
--- a/recipes/bioconductor-xenopus.db0/post-link.sh
+++ b/recipes/bioconductor-xenopus.db0/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "xenopus.db0-3.17.0"
+installBiocDataPackage.sh "xenopus.db0-3.18.0"
diff --git a/recipes/bioconductor-xenopuslaeviscdf/meta.yaml b/recipes/bioconductor-xenopuslaeviscdf/meta.yaml
index 7b4c9e53adb36..567de4b026944 100644
--- a/recipes/bioconductor-xenopuslaeviscdf/meta.yaml
+++ b/recipes/bioconductor-xenopuslaeviscdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "xenopuslaeviscdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 9d09ff76471ae60faf71090e0638f240
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-xenopuslaeviscdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-xenopuslaevisprobe/meta.yaml b/recipes/bioconductor-xenopuslaevisprobe/meta.yaml
index 0853aa6c416f5..25b78155e0d34 100644
--- a/recipes/bioconductor-xenopuslaevisprobe/meta.yaml
+++ b/recipes/bioconductor-xenopuslaevisprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "xenopuslaevisprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 06a25268a5ab57bddf28bbb364ea977b
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-xenopuslaevisprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-xeva/meta.yaml b/recipes/bioconductor-xeva/meta.yaml
index 6c08622a0c2a1..26be5b11abecf 100644
--- a/recipes/bioconductor-xeva/meta.yaml
+++ b/recipes/bioconductor-xeva/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.16.0" %}
+{% set version = "1.18.0" %}
 {% set name = "Xeva" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,19 +11,20 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 5b765aa8d8e7a153fb73707c5f95c805
+  md5: 94733e069395be524fa2d7254f9c2c5c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-xeva", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-pharmacogx >=3.4.0,<3.5.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-pharmacogx >=3.6.0,<3.7.0'
     - r-base
     - r-bbmisc
     - r-doparallel
@@ -33,9 +34,9 @@ requirements:
     - r-rmisc
     - r-scales
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-pharmacogx >=3.4.0,<3.5.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-pharmacogx >=3.6.0,<3.7.0'
     - r-base
     - r-bbmisc
     - r-doparallel
diff --git a/recipes/bioconductor-xhybcasneuf/meta.yaml b/recipes/bioconductor-xhybcasneuf/meta.yaml
index 487726e7771cb..82aa53006c4fa 100644
--- a/recipes/bioconductor-xhybcasneuf/meta.yaml
+++ b/recipes/bioconductor-xhybcasneuf/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.38.0" %}
+{% set version = "1.40.0" %}
 {% set name = "XhybCasneuf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,28 +11,29 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 9522270bba562cca4c2e5e2438294eca
+  md5: f3e6306b5c05fb026e36e4c60656e25a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-xhybcasneuf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
     - 'bioconductor-ath1121501cdf >=2.18.0,<2.19.0'
-    - 'bioconductor-tinesath1cdf >=1.38.0,<1.39.0'
+    - 'bioconductor-tinesath1cdf >=1.40.0,<1.41.0'
     - r-base
     - r-rcolorbrewer
   run:
-    - 'bioconductor-affy >=1.78.0,<1.79.0'
+    - 'bioconductor-affy >=1.80.0,<1.81.0'
     - 'bioconductor-ath1121501cdf >=2.18.0,<2.19.0'
-    - 'bioconductor-tinesath1cdf >=1.38.0,<1.39.0'
+    - 'bioconductor-tinesath1cdf >=1.40.0,<1.41.0'
     - r-base
     - r-rcolorbrewer
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-xhybcasneuf/post-link.sh b/recipes/bioconductor-xhybcasneuf/post-link.sh
index 67bc5c34fecf6..40faf39513b0d 100644
--- a/recipes/bioconductor-xhybcasneuf/post-link.sh
+++ b/recipes/bioconductor-xhybcasneuf/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "xhybcasneuf-1.38.0"
+installBiocDataPackage.sh "xhybcasneuf-1.40.0"
diff --git a/recipes/bioconductor-xina/meta.yaml b/recipes/bioconductor-xina/meta.yaml
index c33500c40dac5..727ba242c837e 100644
--- a/recipes/bioconductor-xina/meta.yaml
+++ b/recipes/bioconductor-xina/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.18.0" %}
+{% set version = "1.20.0" %}
 {% set name = "XINA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,17 +11,18 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 82af22019aa44d3dc2afb08123721e80
+  md5: f6a090d9e94032485c8c42a6c985b223
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-xina", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-stringdb >=2.12.0,<2.13.0'
+    - 'bioconductor-stringdb >=2.14.0,<2.15.0'
     - r-alluvial
     - r-base
     - r-ggplot2
@@ -30,7 +31,7 @@ requirements:
     - r-mclust
     - r-plyr
   run:
-    - 'bioconductor-stringdb >=2.12.0,<2.13.0'
+    - 'bioconductor-stringdb >=2.14.0,<2.15.0'
     - r-alluvial
     - r-base
     - r-ggplot2
diff --git a/recipes/bioconductor-xlaevis.db/meta.yaml b/recipes/bioconductor-xlaevis.db/meta.yaml
index 0cc840f89a298..cc34275d94283 100644
--- a/recipes/bioconductor-xlaevis.db/meta.yaml
+++ b/recipes/bioconductor-xlaevis.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.2.3" %}
 {% set name = "xlaevis.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: deaffe47b4ee48a7edb159d8104dc241
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-xlaevis.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.xl.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.xl.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.xl.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.xl.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-xlaevis2cdf/meta.yaml b/recipes/bioconductor-xlaevis2cdf/meta.yaml
index 8d60fc7d6bd5b..80adc6f158546 100644
--- a/recipes/bioconductor-xlaevis2cdf/meta.yaml
+++ b/recipes/bioconductor-xlaevis2cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "xlaevis2cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 9e4a80d66397299b4e66a8d6715ca4aa
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-xlaevis2cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-xlaevis2probe/meta.yaml b/recipes/bioconductor-xlaevis2probe/meta.yaml
index 8f8442f4e7479..1cba9aafeeb01 100644
--- a/recipes/bioconductor-xlaevis2probe/meta.yaml
+++ b/recipes/bioconductor-xlaevis2probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "xlaevis2probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: d86f8a05e106eb3123435da233ff851d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-xlaevis2probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-xmapbridge/meta.yaml b/recipes/bioconductor-xmapbridge/meta.yaml
index 880ef4a9d3fe4..8a8a6245590fd 100644
--- a/recipes/bioconductor-xmapbridge/meta.yaml
+++ b/recipes/bioconductor-xmapbridge/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.58.0" %}
+{% set version = "1.60.0" %}
 {% set name = "xmapbridge" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 69bd426f8a70da8f291689f424ba0ed5
+  md5: 8b07bc6daa0d9dad8943ef442076eb5e
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-xmapbridge", max_pin="x.x") }}'
   noarch: generic
 # Suggests: RUnit, RColorBrewer
 requirements:
diff --git a/recipes/bioconductor-xnastring/meta.yaml b/recipes/bioconductor-xnastring/meta.yaml
index e0246413138d7..b489f8d737902 100644
--- a/recipes/bioconductor-xnastring/meta.yaml
+++ b/recipes/bioconductor-xnastring/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.8.0" %}
+{% set version = "1.10.0" %}
 {% set name = "XNAString" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6a510ae3de3d9ac6d5a9bcb22c06a954
+  md5: d09bf1b8eba2843f2b6285d353fb51bc
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-xnastring", max_pin="x.x") }}'
 # Suggests: BiocStyle, knitr, rmarkdown, markdown, testthat, BSgenome.Hsapiens.UCSC.hg38, pander
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-formattable
@@ -35,11 +36,11 @@ requirements:
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - r-data.table
     - r-formattable
diff --git a/recipes/bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch37/meta.yaml b/recipes/bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch37/meta.yaml
index d66daca16a817..ebe23beba3511 100644
--- a/recipes/bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch37/meta.yaml
+++ b/recipes/bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch37/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.12" %}
 {% set name = "XtraSNPlocs.Hsapiens.dbSNP144.GRCh37" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,31 +13,32 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 758d024c50d2349036dc27cc689b4e5a
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch37", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg19, SNPlocs.Hsapiens.dbSNP144.GRCh37
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch38/meta.yaml b/recipes/bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch38/meta.yaml
index 1067bc0744ccc..ac390b39412d5 100644
--- a/recipes/bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch38/meta.yaml
+++ b/recipes/bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch38/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "0.99.12" %}
 {% set name = "XtraSNPlocs.Hsapiens.dbSNP144.GRCh38" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,31 +13,32 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: c617aa805c7ecf60ee9283eb3c51b1c7
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch38", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg38, SNPlocs.Hsapiens.dbSNP144.GRCh38
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-bsgenome >=1.68.0,<1.69.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-bsgenome >=1.70.0,<1.71.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-xtropicaliscdf/meta.yaml b/recipes/bioconductor-xtropicaliscdf/meta.yaml
index 2d5f6db6782db..117cb678fcdff 100644
--- a/recipes/bioconductor-xtropicaliscdf/meta.yaml
+++ b/recipes/bioconductor-xtropicaliscdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "xtropicaliscdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 253e3cde76a393789e124f395820e947
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-xtropicaliscdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-xtropicalisprobe/meta.yaml b/recipes/bioconductor-xtropicalisprobe/meta.yaml
index d9e3ecbaf8a26..d9ebdd7601d4a 100644
--- a/recipes/bioconductor-xtropicalisprobe/meta.yaml
+++ b/recipes/bioconductor-xtropicalisprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "xtropicalisprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 43d15a7e12edaec1bb5f24b87498b599
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-xtropicalisprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-xvector/meta.yaml b/recipes/bioconductor-xvector/meta.yaml
index f9ccd9271755f..8d926876d14e2 100644
--- a/recipes/bioconductor-xvector/meta.yaml
+++ b/recipes/bioconductor-xvector/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.40.0" %}
+{% set version = "0.42.0" %}
 {% set name = "XVector" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,27 +11,28 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: c5b392028689bd387623344c3edc457d
+  md5: f126998c6b563132e51ea31c3995c6b9
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-xvector", max_pin="x.x") }}'
 # Suggests: Biostrings, drosophila2probe, RUnit
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
     - libblas
     - liblapack
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-zlibbioc >=1.46.0,<1.47.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-zlibbioc >=1.48.0,<1.49.0'
     - r-base
   build:
     - {{ compiler('c') }}
@@ -45,6 +46,8 @@ about:
   summary: 'Foundation of external vector representation and manipulation in Bioconductor'
   description: 'Provides memory efficient S4 classes for storing sequences "externally" (e.g. behind an R external pointer, or on disk).'
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:xvector
     - doi:10.1038/nmeth.3252
diff --git a/recipes/bioconductor-yamss/meta.yaml b/recipes/bioconductor-yamss/meta.yaml
index be366a95b73cb..7c64564193b38 100644
--- a/recipes/bioconductor-yamss/meta.yaml
+++ b/recipes/bioconductor-yamss/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "yamss" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,34 +11,35 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: b3a62f39c6f009aac9c61d866e163eca
+  md5: a60cfddcf6749fc165badbe9a0f8a311
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-yamss", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr, rmarkdown, digest, mtbls2, testthat
 requirements:
   host:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-matrix
   run:
-    - 'bioconductor-biocgenerics >=0.46.0,<0.47.0'
-    - 'bioconductor-ebimage >=4.42.0,<4.43.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-mzr >=2.34.0,<2.35.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocgenerics >=0.48.0,<0.49.0'
+    - 'bioconductor-ebimage >=4.44.0,<4.45.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-mzr >=2.36.0,<2.37.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-data.table
     - r-matrix
diff --git a/recipes/bioconductor-yapsa/meta.yaml b/recipes/bioconductor-yapsa/meta.yaml
index 09e3ec2d5a308..ddef2c91d0bb8 100644
--- a/recipes/bioconductor-yapsa/meta.yaml
+++ b/recipes/bioconductor-yapsa/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.25.0" %}
+{% set version = "1.28.0" %}
 {% set name = "YAPSA" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,25 +11,26 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 46e58d6b25038c9f501d67e67e49eac4
+  md5: 7da75a0c0eabc79012aeb87c9a6e9582
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-yapsa", max_pin="x.x") }}'
   noarch: generic
 # Suggests: testthat, BiocStyle, knitr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gtrellis >=1.32.0,<1.33.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-somaticsignatures >=2.36.0,<2.37.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gtrellis >=1.34.0,<1.35.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-somaticsignatures >=2.38.0,<2.39.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-circlize
     - r-corrplot
@@ -46,15 +47,15 @@ requirements:
     - r-pracma
     - r-reshape2
   run:
-    - 'bioconductor-biostrings >=2.68.0,<2.69.0'
+    - 'bioconductor-biostrings >=2.70.0,<2.71.0'
     - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
-    - 'bioconductor-complexheatmap >=2.16.0,<2.17.0'
-    - 'bioconductor-genomeinfodb >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-gtrellis >=1.32.0,<1.33.0'
-    - 'bioconductor-keggrest >=1.40.0,<1.41.0'
-    - 'bioconductor-somaticsignatures >=2.36.0,<2.37.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-complexheatmap >=2.18.0,<2.19.0'
+    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-gtrellis >=1.34.0,<1.35.0'
+    - 'bioconductor-keggrest >=1.42.0,<1.43.0'
+    - 'bioconductor-somaticsignatures >=2.38.0,<2.39.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-circlize
     - r-corrplot
diff --git a/recipes/bioconductor-yarn/meta.yaml b/recipes/bioconductor-yarn/meta.yaml
index 8253a3774aab2..2ac85ac689142 100644
--- a/recipes/bioconductor-yarn/meta.yaml
+++ b/recipes/bioconductor-yarn/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.26.0" %}
+{% set version = "1.28.0" %}
 {% set name = "yarn" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 187cdd1c00ed2bad7d7378e1a14e10ca
+  md5: 90baa3de55a308d7deef0f913c6fdef8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-yarn", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat (>= 0.8)
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-quantro >=1.34.0,<1.35.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-quantro >=1.36.0,<1.37.0'
     - r-base
     - r-downloader
     - r-gplots
@@ -34,12 +35,12 @@ requirements:
     - r-rcolorbrewer
     - r-readr
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
-    - 'bioconductor-biomart >=2.56.0,<2.57.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-preprocesscore >=1.62.0,<1.63.0'
-    - 'bioconductor-quantro >=1.34.0,<1.35.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
+    - 'bioconductor-biomart >=2.58.0,<2.59.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-preprocesscore >=1.64.0,<1.65.0'
+    - 'bioconductor-quantro >=1.36.0,<1.37.0'
     - r-base
     - r-downloader
     - r-gplots
diff --git a/recipes/bioconductor-ye6100subacdf/meta.yaml b/recipes/bioconductor-ye6100subacdf/meta.yaml
index 3f2f1f1ecdd16..987121a33ff2b 100644
--- a/recipes/bioconductor-ye6100subacdf/meta.yaml
+++ b/recipes/bioconductor-ye6100subacdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "ye6100subacdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 27bd71410956bfe8bffc8de14b85bdb0
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ye6100subacdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ye6100subbcdf/meta.yaml b/recipes/bioconductor-ye6100subbcdf/meta.yaml
index f854bb2a6c47e..e0bfba3fe6699 100644
--- a/recipes/bioconductor-ye6100subbcdf/meta.yaml
+++ b/recipes/bioconductor-ye6100subbcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "ye6100subbcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: ee9ec4bd941940745bad538d79bfeab4
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ye6100subbcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ye6100subccdf/meta.yaml b/recipes/bioconductor-ye6100subccdf/meta.yaml
index 782299ff2634b..ff6863fba3546 100644
--- a/recipes/bioconductor-ye6100subccdf/meta.yaml
+++ b/recipes/bioconductor-ye6100subccdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "ye6100subccdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: fcdfed29a695fe53b62bacfe13dfe0c1
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ye6100subccdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ye6100subdcdf/meta.yaml b/recipes/bioconductor-ye6100subdcdf/meta.yaml
index b9ffb737415e4..03e5320b76673 100644
--- a/recipes/bioconductor-ye6100subdcdf/meta.yaml
+++ b/recipes/bioconductor-ye6100subdcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "ye6100subdcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 521b501ddbcdc680c3d27b5b201029b1
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ye6100subdcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-yeast.db0/meta.yaml b/recipes/bioconductor-yeast.db0/meta.yaml
index 5f538d60bb615..b98f59b289457 100644
--- a/recipes/bioconductor-yeast.db0/meta.yaml
+++ b/recipes/bioconductor-yeast.db0/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "yeast.db0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: ce5a6e6febb6565c3a382d188d7652c0
+  md5: 483043596daee94866843e6a43dcf538
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-yeast.db0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-yeast.db0/post-link.sh b/recipes/bioconductor-yeast.db0/post-link.sh
index 3c67745d538b4..84300e3c77c28 100644
--- a/recipes/bioconductor-yeast.db0/post-link.sh
+++ b/recipes/bioconductor-yeast.db0/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "yeast.db0-3.17.0"
+installBiocDataPackage.sh "yeast.db0-3.18.0"
diff --git a/recipes/bioconductor-yeast2.db/meta.yaml b/recipes/bioconductor-yeast2.db/meta.yaml
index ad899e25c4fd4..8a430b81ad727 100644
--- a/recipes/bioconductor-yeast2.db/meta.yaml
+++ b/recipes/bioconductor-yeast2.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "yeast2.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: add5784349cde4d01b75ea4472d25597
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-yeast2.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.sc.sgd.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.sc.sgd.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.sc.sgd.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.sc.sgd.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-yeast2cdf/meta.yaml b/recipes/bioconductor-yeast2cdf/meta.yaml
index f7dfe00e0c340..af701c9f658c7 100644
--- a/recipes/bioconductor-yeast2cdf/meta.yaml
+++ b/recipes/bioconductor-yeast2cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "yeast2cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 0a718d78ae56bef9bad8168123038ac8
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-yeast2cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-yeast2probe/meta.yaml b/recipes/bioconductor-yeast2probe/meta.yaml
index 69700e2c68925..9e744a4c6cd0b 100644
--- a/recipes/bioconductor-yeast2probe/meta.yaml
+++ b/recipes/bioconductor-yeast2probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "yeast2probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 3f52a2b7bd379624bc2966ca28c9ddf9
 build:
-  number: 12
+  number: 13
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-yeast2probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-yeastcc/meta.yaml b/recipes/bioconductor-yeastcc/meta.yaml
index 20948f279f447..51737465e21ea 100644
--- a/recipes/bioconductor-yeastcc/meta.yaml
+++ b/recipes/bioconductor-yeastcc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.40.0" %}
+{% set version = "1.42.0" %}
 {% set name = "yeastCC" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: bf769fb99f3c5b763cc44fb25947231a
+  md5: 847d9bba73cb25f458f608c2cd6bf0e8
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-yeastcc", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
   run:
-    - 'bioconductor-biobase >=2.60.0,<2.61.0'
+    - 'bioconductor-biobase >=2.62.0,<2.63.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-yeastcc/post-link.sh b/recipes/bioconductor-yeastcc/post-link.sh
index de0088d2ddb2c..5cfa549de6683 100644
--- a/recipes/bioconductor-yeastcc/post-link.sh
+++ b/recipes/bioconductor-yeastcc/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "yeastcc-1.40.0"
+installBiocDataPackage.sh "yeastcc-1.42.0"
diff --git a/recipes/bioconductor-yeastexpdata/meta.yaml b/recipes/bioconductor-yeastexpdata/meta.yaml
index 41a56318dc5d8..e659778f8d1c3 100644
--- a/recipes/bioconductor-yeastexpdata/meta.yaml
+++ b/recipes/bioconductor-yeastexpdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.46.0" %}
+{% set version = "0.48.0" %}
 {% set name = "yeastExpData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,23 +11,24 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 57c3359351ed64d39e2d8d82abe2d852
+  md5: 7cd63808a957defe831bf3e9d3ef4789
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-yeastexpdata", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biobase, GO.db, RBGL, org.Sc.sgd.db
 requirements:
   host:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
   run:
-    - 'bioconductor-graph >=1.78.0,<1.79.0'
+    - 'bioconductor-graph >=1.80.0,<1.81.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-yeastexpdata/post-link.sh b/recipes/bioconductor-yeastexpdata/post-link.sh
index 315ba75beea94..60ca33cf64171 100644
--- a/recipes/bioconductor-yeastexpdata/post-link.sh
+++ b/recipes/bioconductor-yeastexpdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "yeastexpdata-0.46.0"
+installBiocDataPackage.sh "yeastexpdata-0.48.0"
diff --git a/recipes/bioconductor-yeastgsdata/meta.yaml b/recipes/bioconductor-yeastgsdata/meta.yaml
index 0d48dd94a2999..ae9c7079330f7 100644
--- a/recipes/bioconductor-yeastgsdata/meta.yaml
+++ b/recipes/bioconductor-yeastgsdata/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.38.0" %}
+{% set version = "0.40.0" %}
 {% set name = "yeastGSData" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 09f1e0c194efae4d807ab0b3b14629a5
+  md5: bc455a9ecd3eb2652f887026841b3c69
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-yeastgsdata", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-yeastgsdata/post-link.sh b/recipes/bioconductor-yeastgsdata/post-link.sh
index 412c2a9f44881..20a72ee7a6dc7 100644
--- a/recipes/bioconductor-yeastgsdata/post-link.sh
+++ b/recipes/bioconductor-yeastgsdata/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "yeastgsdata-0.38.0"
+installBiocDataPackage.sh "yeastgsdata-0.40.0"
diff --git a/recipes/bioconductor-yeastnagalakshmi/meta.yaml b/recipes/bioconductor-yeastnagalakshmi/meta.yaml
index 585074839b144..1fdc69c9ba943 100644
--- a/recipes/bioconductor-yeastnagalakshmi/meta.yaml
+++ b/recipes/bioconductor-yeastnagalakshmi/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.36.0" %}
+{% set version = "1.38.0" %}
 {% set name = "yeastNagalakshmi" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: e9c196bfda6e0909a324d88a616dc992
+  md5: ea5068bf2b4053452f416c56ab32736a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-yeastnagalakshmi", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-yeastnagalakshmi/post-link.sh b/recipes/bioconductor-yeastnagalakshmi/post-link.sh
index 21bc5072c30a3..38aeeac70d388 100644
--- a/recipes/bioconductor-yeastnagalakshmi/post-link.sh
+++ b/recipes/bioconductor-yeastnagalakshmi/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "yeastnagalakshmi-1.36.0"
+installBiocDataPackage.sh "yeastnagalakshmi-1.38.0"
diff --git a/recipes/bioconductor-yeastrnaseq/meta.yaml b/recipes/bioconductor-yeastrnaseq/meta.yaml
index 7136e8f15b98f..267ad94c02c79 100644
--- a/recipes/bioconductor-yeastrnaseq/meta.yaml
+++ b/recipes/bioconductor-yeastrnaseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.38.0" %}
+{% set version = "0.40.0" %}
 {% set name = "yeastRNASeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: f8a8b1a80312aeac4d1676bc8adcb0ee
+  md5: 2344deacf993b96e1709ad96b710471f
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-yeastrnaseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: Biobase, ShortRead, IRanges
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-yeastrnaseq/post-link.sh b/recipes/bioconductor-yeastrnaseq/post-link.sh
index a897a1a63c2fb..5e55679c515cb 100644
--- a/recipes/bioconductor-yeastrnaseq/post-link.sh
+++ b/recipes/bioconductor-yeastrnaseq/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "yeastrnaseq-0.38.0"
+installBiocDataPackage.sh "yeastrnaseq-0.40.0"
diff --git a/recipes/bioconductor-ygs98.db/meta.yaml b/recipes/bioconductor-ygs98.db/meta.yaml
index d4ae7caec47a2..a2127800e3fe5 100644
--- a/recipes/bioconductor-ygs98.db/meta.yaml
+++ b/recipes/bioconductor-ygs98.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "ygs98.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: d21c0dc1ee0f7512ae921a501b425fd3
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ygs98.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.sc.sgd.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.sc.sgd.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.sc.sgd.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.sc.sgd.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ygs98cdf/meta.yaml b/recipes/bioconductor-ygs98cdf/meta.yaml
index e4d5474142f4d..3fe615142da63 100644
--- a/recipes/bioconductor-ygs98cdf/meta.yaml
+++ b/recipes/bioconductor-ygs98cdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "ygs98cdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: ec7df7564cf28e093646325ec55baf1e
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ygs98cdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ygs98frmavecs/meta.yaml b/recipes/bioconductor-ygs98frmavecs/meta.yaml
index 52208c458cde6..aa59611da9db5 100644
--- a/recipes/bioconductor-ygs98frmavecs/meta.yaml
+++ b/recipes/bioconductor-ygs98frmavecs/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "1.3.0" %}
 {% set name = "ygs98frmavecs" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,10 +13,11 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: e78c8447eb381b91dafb2f9688da39dc
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ygs98frmavecs", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
@@ -24,7 +25,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-ygs98probe/meta.yaml b/recipes/bioconductor-ygs98probe/meta.yaml
index 9c19a6f150513..727f6b9cb5c26 100644
--- a/recipes/bioconductor-ygs98probe/meta.yaml
+++ b/recipes/bioconductor-ygs98probe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "ygs98probe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: f40f21d7074818a4ee74a45b5533e89d
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-ygs98probe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-zebrafish.db/meta.yaml b/recipes/bioconductor-zebrafish.db/meta.yaml
index 41da05b397de1..a67f14aba8f67 100644
--- a/recipes/bioconductor-zebrafish.db/meta.yaml
+++ b/recipes/bioconductor-zebrafish.db/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "3.13.0" %}
 {% set name = "zebrafish.db" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,23 +13,24 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 64e40a61e81ac9397affb09880846559
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-zebrafish.db", max_pin="x.x") }}'
   noarch: generic
 # Suggests: DBI, annotate, RUnit
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.dr.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.dr.eg.db >=3.18.0,<3.19.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
-    - 'bioconductor-org.dr.eg.db >=3.17.0,<3.18.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
+    - 'bioconductor-org.dr.eg.db >=3.18.0,<3.19.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-zebrafish.db0/meta.yaml b/recipes/bioconductor-zebrafish.db0/meta.yaml
index e61006f4c9cc7..47615e4211032 100644
--- a/recipes/bioconductor-zebrafish.db0/meta.yaml
+++ b/recipes/bioconductor-zebrafish.db0/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.17.0" %}
+{% set version = "3.18.0" %}
 {% set name = "zebrafish.db0" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: bf2c5c9a8aaee76228e865cab2901cd2
+  md5: 5da71e369e2b538fe276cd58b511ebab
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-zebrafish.db0", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-zebrafish.db0/post-link.sh b/recipes/bioconductor-zebrafish.db0/post-link.sh
index df3ed7576fba4..9c2fee9d13f61 100644
--- a/recipes/bioconductor-zebrafish.db0/post-link.sh
+++ b/recipes/bioconductor-zebrafish.db0/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "zebrafish.db0-3.17.0"
+installBiocDataPackage.sh "zebrafish.db0-3.18.0"
diff --git a/recipes/bioconductor-zebrafishcdf/meta.yaml b/recipes/bioconductor-zebrafishcdf/meta.yaml
index 228a47b0be6e1..fe5266cf6ca7e 100644
--- a/recipes/bioconductor-zebrafishcdf/meta.yaml
+++ b/recipes/bioconductor-zebrafishcdf/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "zebrafishcdf" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 04edbb632600c97610b86423c2d850e7
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-zebrafishcdf", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-zebrafishprobe/meta.yaml b/recipes/bioconductor-zebrafishprobe/meta.yaml
index 07f967fbcbef9..a1f043e4c626b 100644
--- a/recipes/bioconductor-zebrafishprobe/meta.yaml
+++ b/recipes/bioconductor-zebrafishprobe/meta.yaml
@@ -1,6 +1,6 @@
 {% set version = "2.18.0" %}
 {% set name = "zebrafishprobe" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -13,20 +13,21 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: eea2747859afa763addc7313ab0a2452
 build:
-  number: 11
+  number: 12
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-zebrafishprobe", max_pin="x.x") }}'
   noarch: generic
 requirements:
   host:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
   run:
-    - 'bioconductor-annotationdbi >=1.62.0,<1.63.0'
+    - 'bioconductor-annotationdbi >=1.64.0,<1.65.0'
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-zebrafishrnaseq/meta.yaml b/recipes/bioconductor-zebrafishrnaseq/meta.yaml
index d3c760874b7b2..64a3e534df264 100644
--- a/recipes/bioconductor-zebrafishrnaseq/meta.yaml
+++ b/recipes/bioconductor-zebrafishrnaseq/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.20.0" %}
+{% set version = "1.22.0" %}
 {% set name = "zebrafishRNASeq" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 06390452c93fde30918ee5c5a3f6e5f2
+  md5: c1fcbadec1b25e4b28483c015f7ab35c
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-zebrafishrnaseq", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, knitr
 requirements:
@@ -25,7 +26,7 @@ requirements:
   run:
     - r-base
     - curl
-    - bioconductor-data-packages>=20230706
+    - 'bioconductor-data-packages >=20231203'
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'
diff --git a/recipes/bioconductor-zebrafishrnaseq/post-link.sh b/recipes/bioconductor-zebrafishrnaseq/post-link.sh
index f93e198eb9261..48e9432717478 100644
--- a/recipes/bioconductor-zebrafishrnaseq/post-link.sh
+++ b/recipes/bioconductor-zebrafishrnaseq/post-link.sh
@@ -1,2 +1,2 @@
 #!/bin/bash
-installBiocDataPackage.sh "zebrafishrnaseq-1.20.0"
+installBiocDataPackage.sh "zebrafishrnaseq-1.22.0"
diff --git a/recipes/bioconductor-zellkonverter/meta.yaml b/recipes/bioconductor-zellkonverter/meta.yaml
index 20a3cc49e9795..779bd0a947f9a 100644
--- a/recipes/bioconductor-zellkonverter/meta.yaml
+++ b/recipes/bioconductor-zellkonverter/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.10.1" %}
+{% set version = "1.12.1" %}
 {% set name = "zellkonverter" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,31 +11,32 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 1163d42795ee3d22169a0d6212a95c17
+  md5: 5ba05cd62d95057a39c194a5084c551a
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-zellkonverter", max_pin="x.x") }}'
   noarch: generic
-# Suggests: anndata, BiocFileCache, BiocStyle, covr, HDF5Array, knitr, pkgload, rmarkdown, rhdf5, scRNAseq, spelling, testthat, withr
+# Suggests: anndata, BiocFileCache, BiocStyle, covr, HDF5Array, knitr, pkgload, rmarkdown, rhdf5 (>= 2.45.1), scRNAseq, spelling, testthat, withr
 requirements:
   host:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cli
     - r-matrix
     - r-reticulate
   run:
-    - 'bioconductor-basilisk >=1.12.0,<1.13.0'
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-s4vectors >=0.38.0,<0.39.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-basilisk >=1.14.0,<1.15.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-cli
     - r-matrix
diff --git a/recipes/bioconductor-zenith/meta.yaml b/recipes/bioconductor-zenith/meta.yaml
index 5df9b466a762e..20b3c23ba110d 100644
--- a/recipes/bioconductor-zenith/meta.yaml
+++ b/recipes/bioconductor-zenith/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.2.0" %} 
+{% set version = "1.4.2" %}
 {% set name = "zenith" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,20 +11,21 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 92aec1931e3466b18edd951d9f2f1866
+  md5: 60c9729fb2407d62a1ea15b1aa5ee0eb
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-zenith", max_pin="x.x") }}'
   noarch: generic
 # Suggests: BiocStyle, BiocGenerics, knitr, pander, rmarkdown, tweeDEseqCountData, edgeR, kableExtra, RUnit
 requirements:
   host:
-    - 'bioconductor-enrichmentbrowser >=2.30.0,<2.31.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-variancepartition >=1.30.0,<1.31.0'
+    - 'bioconductor-enrichmentbrowser >=2.32.0,<2.33.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-variancepartition >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - 'r-msigdbr >=7.5.1'
@@ -34,10 +35,10 @@ requirements:
     - r-rfast
     - r-tidyr
   run:
-    - 'bioconductor-enrichmentbrowser >=2.30.0,<2.31.0'
-    - 'bioconductor-gseabase >=1.62.0,<1.63.0'
-    - 'bioconductor-limma >=3.56.0,<3.57.0'
-    - 'bioconductor-variancepartition >=1.30.0,<1.31.0'
+    - 'bioconductor-enrichmentbrowser >=2.32.0,<2.33.0'
+    - 'bioconductor-gseabase >=1.64.0,<1.65.0'
+    - 'bioconductor-limma >=3.58.0,<3.59.0'
+    - 'bioconductor-variancepartition >=1.32.0,<1.33.0'
     - r-base
     - r-ggplot2
     - 'r-msigdbr >=7.5.1'
diff --git a/recipes/bioconductor-zfpkm/meta.yaml b/recipes/bioconductor-zfpkm/meta.yaml
index e3d521f2c1214..0624f38a002d1 100644
--- a/recipes/bioconductor-zfpkm/meta.yaml
+++ b/recipes/bioconductor-zfpkm/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "zFPKM" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,24 +11,25 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 6819aae4b24e1a3ff09b47137e6e9a8f
+  md5: a167e99447d7fd6b5081152a7d4472a4
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-zfpkm", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, limma, edgeR, GEOquery, stringr, printr, rmarkdown
 requirements:
   host:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-checkmate
     - r-dplyr
     - r-ggplot2
     - r-tidyr
   run:
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-checkmate
     - r-dplyr
diff --git a/recipes/bioconductor-zinbwave/meta.yaml b/recipes/bioconductor-zinbwave/meta.yaml
index 48a73518b7173..2dec8b8225d7f 100644
--- a/recipes/bioconductor-zinbwave/meta.yaml
+++ b/recipes/bioconductor-zinbwave/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.22.0" %}
+{% set version = "1.24.0" %}
 {% set name = "zinbwave" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,30 +11,31 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: eb568f3b13f70194dfbd6438d917b0d0
+  md5: e909f5d76f0ce0b7d65358ee0f80b1f3
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-zinbwave", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, matrixStats, magrittr, scRNAseq, ggplot2, biomaRt, BiocStyle, Rtsne, DESeq2
 requirements:
   host:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - r-softimpute
   run:
-    - 'bioconductor-biocparallel >=1.34.0,<1.35.0'
-    - 'bioconductor-edger >=3.42.0,<3.43.0'
-    - 'bioconductor-genefilter >=1.82.0,<1.83.0'
-    - 'bioconductor-singlecellexperiment >=1.22.0,<1.23.0'
-    - 'bioconductor-summarizedexperiment >=1.30.0,<1.31.0'
+    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
+    - 'bioconductor-edger >=4.0.0,<4.1.0'
+    - 'bioconductor-genefilter >=1.84.0,<1.85.0'
+    - 'bioconductor-singlecellexperiment >=1.24.0,<1.25.0'
+    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
     - r-base
     - r-matrix
     - r-softimpute
diff --git a/recipes/bioconductor-zlibbioc/meta.yaml b/recipes/bioconductor-zlibbioc/meta.yaml
index bf2395a8350b9..dfd70cebb4ab0 100644
--- a/recipes/bioconductor-zlibbioc/meta.yaml
+++ b/recipes/bioconductor-zlibbioc/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.46.0" %}
+{% set version = "1.48.0" %}
 {% set name = "zlibbioc" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,12 +11,13 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: 1036b343d28d7fe87cd23543d6702425
+  md5: babdaf77bc9e9e8218fa07d643f31730
 build:
-  number: 0
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-zlibbioc", max_pin="x.x") }}'
 # Suggests: BiocStyle
 requirements:
   host:
@@ -39,6 +40,8 @@ about:
   description: 'This package uses the source code of zlib-1.2.5 to create libraries for systems that do not have these available via other means (most Linux and Mac users should have system-level access to zlib, and no direct need for this package). See the vignette for instructions on use.'
   license_file: LICENSE
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:zlibbioc
     - doi:10.1038/nmeth.3252
diff --git a/recipes/bioconductor-zygositypredictor/meta.yaml b/recipes/bioconductor-zygositypredictor/meta.yaml
index f304148a7bc32..6ed4225df0b9b 100644
--- a/recipes/bioconductor-zygositypredictor/meta.yaml
+++ b/recipes/bioconductor-zygositypredictor/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.0.3" %}
+{% set version = "1.2.0" %}
 {% set name = "ZygosityPredictor" %}
-{% set bioc = "3.17" %}
+{% set bioc = "3.18" %}
 
 package:
   name: 'bioconductor-{{ name|lower }}'
@@ -11,22 +11,23 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 08898751473ecbad4c0b07367b5b8cfc
+  md5: c201664f307a2cf422119e2fa87759cf
 build:
   number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports: '{{ pin_subpackage("bioconductor-zygositypredictor", max_pin="x.x") }}'
   noarch: generic
 # Suggests: knitr, rmarkdown, testthat, BiocStyle
 requirements:
   host:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-dplyr
     - r-igraph
@@ -34,12 +35,12 @@ requirements:
     - r-stringr
     - r-tibble
   run:
-    - 'bioconductor-delayedarray >=0.26.0,<0.27.0'
-    - 'bioconductor-genomicalignments >=1.36.0,<1.37.0'
-    - 'bioconductor-genomicranges >=1.52.0,<1.53.0'
-    - 'bioconductor-iranges >=2.34.0,<2.35.0'
-    - 'bioconductor-rsamtools >=2.16.0,<2.17.0'
-    - 'bioconductor-variantannotation >=1.46.0,<1.47.0'
+    - 'bioconductor-delayedarray >=0.28.0,<0.29.0'
+    - 'bioconductor-genomicalignments >=1.38.0,<1.39.0'
+    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
+    - 'bioconductor-iranges >=2.36.0,<2.37.0'
+    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
+    - 'bioconductor-variantannotation >=1.48.0,<1.49.0'
     - r-base
     - r-dplyr
     - r-igraph
diff --git a/recipes/biodigest/meta.yaml b/recipes/biodigest/meta.yaml
new file mode 100644
index 0000000000000..8bb365dda3fca
--- /dev/null
+++ b/recipes/biodigest/meta.yaml
@@ -0,0 +1,49 @@
+{% set name = "biodigest" %}
+{% set version = "0.2.16" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: 7618cedf40fedd6dd60aa2fbf8635fb4af0a2c0ae16c01ef9741d30729b6e8bc
+
+build:
+  number: 2
+  script: "{{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation"
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage('biodigest', max_pin="x.x") }}
+
+
+requirements:
+  host:
+    - pip
+    - python >=3.7
+  run:
+    - biothings_client ==0.2.6
+    - gseapy ==0.10.5
+    - graph-tool >=2.58
+    - numpy ==1.24.3
+    - pandas ==1.5.2
+    - psutil ==5.9.0
+    - pycairo >=1.21.0
+    - python >=3.7
+    - requests >=2.28.2
+    - scipy ==1.8.0
+    - seaborn >=0.12.2
+
+test:
+  imports:
+    - biodigest
+    - biodigest.evaluation
+    - biodigest.evaluation.d_utils
+    - biodigest.evaluation.mappers
+
+about:
+  home: "http://pypi.python.org/pypi/biodigest/"
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE
+  summary: "In silico Validation of Disease and Gene sets, Clusterings or Subnetworks (DIGEST)"
diff --git a/recipes/biodigest/post-link.sh b/recipes/biodigest/post-link.sh
new file mode 100644
index 0000000000000..75d67231bbb28
--- /dev/null
+++ b/recipes/biodigest/post-link.sh
@@ -0,0 +1,5 @@
+#!/bin/bash
+
+echo "Running setup script..." >> "$PREFIX/.messages.txt"
+python -c "from biodigest import setup; setup.main(setup_type='api')" >> "$PREFIX/.messages.txt"
+echo "Setup script finished." >> "$PREFIX/.messages.txt"
\ No newline at end of file
diff --git a/recipes/bioframe/meta.yaml b/recipes/bioframe/meta.yaml
index 48de9a1b12ad2..3ffa68380d383 100644
--- a/recipes/bioframe/meta.yaml
+++ b/recipes/bioframe/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "bioframe" %}
-{% set version = "0.4.1" %}
+{% set version = "0.7.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,25 +7,30 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 9ec45f8dad590e92d873d7a8fb3ca38de4b7a9382459128cacb497fcec8257b6
+  sha256: c843c41e5657c16a580a041d1dff7964a6ee2bf0e732e396fbc0ebbd05329c58
 
 build:
   noarch: python
   number: 0
-  script: "touch requirements.txt && {{ PYTHON }} -m pip install . -vv"
+  script: "touch requirements.txt && {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('bioframe', max_pin="x") }}
 
 requirements:
   host:
     - pip
     - python >=3.7
+    - hatchling
+    - hatch-vcs
   run:
-    - numpy >=1.9
-    - pandas >=0.17
+    - numpy >=1.10
+    - pandas >=1.3
     - matplotlib-base
     - pyfaidx
     - pairix
     - pysam
     - python >=3.7
+    - pyyaml
     - requests
     - six
     - cytoolz
diff --git a/recipes/bioinfokit/meta.yaml b/recipes/bioinfokit/meta.yaml
index 1ca48aad8ce28..abbd6740db00c 100644
--- a/recipes/bioinfokit/meta.yaml
+++ b/recipes/bioinfokit/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "2.1.1" %}
+{% set version = "2.1.3" %}
 
 package:
   name: bioinfokit
@@ -6,12 +6,14 @@ package:
 
 source:
   url: https://github.com/reneshbedre/bioinfokit/archive/{{ version }}.tar.gz
-  sha256: c7402971a11503bf91b74e0c64123da2ec0ad9093dff0ee09cfd722cfea0955a
+  sha256: 68f6e851ad8db6d69b45548761be3a6af9ecb819be21b12ca4bdc4d53297aa84
 
 build:
   noarch: python
   number: 0
   script: python -m pip install --no-deps --ignore-installed .
+  run_exports:
+    - {{ pin_subpackage('bioinfokit', max_pin='x') }}
 
 requirements:
   host:
diff --git a/recipes/bionumpy/meta.yaml b/recipes/bionumpy/meta.yaml
index d88a923f79ee4..bab3c008cfa26 100644
--- a/recipes/bionumpy/meta.yaml
+++ b/recipes/bionumpy/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.2.26" %}
+{% set version = "1.0.9" %}
 
 package:
   name: bionumpy
@@ -6,13 +6,14 @@ package:
 
 source:
   url: https://github.com/bionumpy/bionumpy/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 8b3e332b86d301a0bc0d5228fab234147ff06c4709fcfb28d125bf010eb8d4ea
+  sha256: 91410620e3ed38ce349fd77ec528e49c2c0a60535cd70d704c5291a87f59c255
   
 build:
   noarch: python
   number: 0
   script: {{ PYTHON }} -m pip install . --no-deps -vv
-
+  run_exports:
+    - {{ pin_subpackage("bionumpy", max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/biophi/meta.yaml b/recipes/biophi/meta.yaml
index 8fea66bd29ef7..c207209df1acb 100644
--- a/recipes/biophi/meta.yaml
+++ b/recipes/biophi/meta.yaml
@@ -10,10 +10,12 @@ source:
 
 build:
   noarch: python
-  number: 1
+  number: 2
   entry_points:
     - biophi = biophi.common.cli.main:main
   script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
+  run_exports:
+    - {{ pin_subpackage("biophi", max_pin="x.x") }}
 
 requirements:
   host:
@@ -28,7 +30,8 @@ requirements:
     - hmmer >=3.1
     - click >=7
     - sqlalchemy <2  # BioPhi is currently incompatible with SQLAlchemy 2.0 Engine
-    - flask >=2.1
+    - flask <3
+    - werkzeug <3
     - redis-py
     - celery
     - requests
diff --git a/recipes/biscuit/build.sh b/recipes/biscuit/build.sh
index b69c7a1e293f1..f19d32dd1e12f 100644
--- a/recipes/biscuit/build.sh
+++ b/recipes/biscuit/build.sh
@@ -1,9 +1,16 @@
 #!/bin/bash
 
-BIN=$PREFIX/bin
-mkdir -p $BIN
-make CC="$CC $LDFLAGS" CFLAGS="$CFLAGS"
-cp biscuit $BIN
-cp QC.sh $BIN
-cp build_biscuit_QC_assets.pl $BIN
-sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' $BIN/build_biscuit_QC_assets.pl
+# Needed for building utils dependency
+export INCLUDE_PATH="${PREFIX}/include"
+export LIBRARY_PATH="${PREFIX}/lib"
+export LDFLAGS="${LDFLAGS} -pthread -L${PREFIX}/lib"
+
+mkdir -p "${PREFIX}/bin"
+mkdir -p build
+cd build || exit 1
+cmake -DCMAKE_INSTALL_PREFIX:PATH="${PREFIX}" ..
+make CC="${CC} ${LDFLAGS}" CFLAGS="${CFLAGS} -O3"
+make install
+
+# Needed to run asset builder
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' ${PREFIX}/bin/build_biscuit_QC_assets.pl
diff --git a/recipes/biscuit/meta.yaml b/recipes/biscuit/meta.yaml
index ebf3a5127fee1..410873d5654c5 100644
--- a/recipes/biscuit/meta.yaml
+++ b/recipes/biscuit/meta.yaml
@@ -1,44 +1,46 @@
-{% set version = "1.2.1.20230601" %}
+{% set version = "1.5.0.20240506" %}
 
 package:
   name: biscuit
   version: {{ version }}
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('biscuit', max_pin='x.x') }}
 
 source:
   - url: https://github.com/huishenlab/biscuit/releases/download/v{{ version }}/release-source.zip
-    sha256: 8462887bd0fd6bc1fdc04a390414710423d77d35cbd7f6800612735c63bd16a5
-    patches:
-      - patch
-  - url: https://github.com/huishenlab/biscuit/releases/download/v{{ version }}/QC.sh
-    sha256: 8b3fe494c59691184b7584d5b7abee9506ce507518fe564f9a2be8a417f706bd
-  - url: https://github.com/huishenlab/biscuit/releases/download/v{{ version }}/build_biscuit_QC_assets.pl
-    sha256: 7967240b63c8f816e7da79c3c0eb890933ec47df1114f6893b9e9736c8e564a8
+    sha256: fc235dfcc79429d6cb941bda0430b7fbe20db3e0b23b41b3d29040ec67608e27
 
 requirements:
   build:
     - make
+    - cmake
     - {{ compiler('c') }}
   host:
     - zlib
     - ncurses
+    - pthread-stubs
     - libcurl
   run:
     - zlib
     - ncurses
+    - pthread-stubs
     - libcurl
     - perl
 
 test:
   commands:
-    - biscuit 2>&1 || true
-    - QC.sh -h 2>&1 | grep Usage 
-    - build_biscuit_QC_assets.pl -h 2>&1 | grep Usage 
+    - biscuit 2>&1 | grep "Usage"
+    - QC.sh -h 2>&1 | grep "Usage"
+    - build_biscuit_QC_assets.pl -h 2>&1 | grep "Usage"
 
 about:
   home: https://github.com/huishenlab/biscuit
   license: MIT
+  license_family: MIT
+  license_file: LICENSE
   summary: A utility for analyzing sodium bisulfite conversion-based DNA methylation/modification data
-
+  dev_url: https://github.com/huishenlab/biscuit
+  doc_url: https://huishenlab.github.io/biscuit/
diff --git a/recipes/biscuit/patch b/recipes/biscuit/patch
deleted file mode 100644
index 2ef00a4400ab0..0000000000000
--- a/recipes/biscuit/patch
+++ /dev/null
@@ -1,64 +0,0 @@
-diff --git a/Makefile b/Makefile
-index d54b6c2..8ee48a2 100644
---- a/Makefile
-+++ b/Makefile
-@@ -1,5 +1,5 @@
--CC = gcc
--CFLAGS = -W -Wall -finline-functions -fPIC -std=gnu99 -Wno-unused-result -O3
-+CC ?= gcc
-+CFLAGS ?= -W -Wall -finline-functions -fPIC -std=gnu99 -Wno-unused-result -O3
- CLIB = -lncurses -lpthread -lz -lm
- CF_OPTIMIZE = 1
- 
-diff --git a/lib/htslib/Makefile b/lib/htslib/Makefile
-index 9c4ce60..c6722fd 100644
---- a/lib/htslib/Makefile
-+++ b/lib/htslib/Makefile
-@@ -22,7 +22,7 @@
- # FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
- # DEALINGS IN THE SOFTWARE.
- 
--CC     = gcc
-+CC     ?= gcc
- AR     = ar
- RANLIB = ranlib
-
-diff --git a/lib/klib/Makefile b/lib/klib/Makefile
-index 15ad2fc..aebbf64 100644
---- a/lib/klib/Makefile
-+++ b/lib/klib/Makefile
-@@ -1,4 +1,4 @@
--CC     = gcc
-+CC     ?= gcc
- AR     = ar
- CFLAGS = -g -Wall
- 
-diff --git a/lib/sgsl/Makefile b/lib/sgsl/Makefile
-index c939453..bc5fd6e 100644
---- a/lib/sgsl/Makefile
-+++ b/lib/sgsl/Makefile
-@@ -1,4 +1,4 @@
--CC     = gcc
-+CC     ?= gcc
- AR     = ar
- CFLAGS = -g -Wall
- # -std=gnu11 travis complains about this
-@@ -25,7 +25,7 @@ libgsl.a: $(OBJECTS)
- 	$(AR) -csr $@ $^
- 
- test: libgsl.a
--	gcc -I. test/test.c libgsl.a -std=c99 -lm -o test-main
-+	$(CC) -I. test/test.c libgsl.a -std=c99 -lm -o test-main
- 
- clean:
- 	rm -f $(OBJECTS)
-diff --git a/lib/utils/Makefile b/lib/utils/Makefile
-index 9c7f457..3b0cfef 100644
---- a/lib/utils/Makefile
-+++ b/lib/utils/Makefile
-@@ -1,4 +1,4 @@
--CC     = gcc
-+CC     ?= gcc
- AR     = ar
- CFLAGS = -g -Wall
- 
diff --git a/recipes/biscuit/script.sh b/recipes/biscuit/script.sh
deleted file mode 100644
index 80e0ff397a83b..0000000000000
--- a/recipes/biscuit/script.sh
+++ /dev/null
@@ -1 +0,0 @@
-echo efrat
diff --git a/recipes/bismark/meta.yaml b/recipes/bismark/meta.yaml
index 2a3a64310a32a..12da593691bcc 100644
--- a/recipes/bismark/meta.yaml
+++ b/recipes/bismark/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.24.1" %}
-{% set sha256 = "c5409f5fa470ea5ac07327ced28c60b793f5ef88c5a7bc75b71dde0f52f39894" %}
+{% set version = "0.24.2" %}
+{% set sha256 = "e86a5228f9bb63457e2aa713f67b462c63230517bed56df511fd372032acbe86" %}
 
 package:
   name: bismark
@@ -8,13 +8,14 @@ package:
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage("bismark", max_pin="x.x") }}
 
 source:
-  url: https://github.com/FelixKrueger/Bismark/archive/{{ version }}.tar.gz
+  url: https://github.com/FelixKrueger/Bismark/archive/refs/tags/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
 
 requirements:
-  build:
   run:
     - coreutils
     - perl
diff --git a/recipes/blast/build.sh b/recipes/blast/build.sh
index 6042e111ee762..e15801465e2e3 100644
--- a/recipes/blast/build.sh
+++ b/recipes/blast/build.sh
@@ -33,26 +33,57 @@ LIB_INSTALL_DIR=$PREFIX/lib/ncbi-blast+
 mkdir -p src/app/RpsbProc
 cp -rf "${SRC_DIR}/RpsbProc/src/"* src/app/RpsbProc/
 
-# with/without options:
+# Configuration synopsis:
+# https://ncbi.github.io/cxx-toolkit/pages/ch_config.html#ch_config.ch_configget_synopsi
 #
-# dll: enable dynamic linking
-# mt: enable multi-threading
-# -autodep: no automatic dependency build (one time build)
-# -makefile-auto-update: no rebuild of makefile (one time build)
-# flat-makefile: use single makefile
-# -caution: disable configure script warnings
-# -dbapi: don't build database connectivity libs <= configure: WARNING: --with(out)-dbapi is deprecated
-# -lzo: don't add lzo support
-# runpath: set runpath for installed $PREFIX location
-# hard-runpath: disable new dtags (disallow LD_LIBRARY_PATH override on Linux)
-# -debug: disable debug
-# strip: remove debugging symbols (size!)
-# -vdb: disable VDB/SRA toolkit
-# z: set zlib
-# bz2: set libbz2
-# -openssl: disable openssl
-# -gcrypt: disable gcrypt (needed on OSX)
-# -krb5: disable kerberos (needed on OSX)
+# Description of used options (from ./configure --help):
+# bin-release:
+#   Build executables suitable for public release
+# 64:
+#   Compile in 64-bit mode instead of 32-bit.
+# mt:
+#   Compile in a multi-threading safe manner.
+# dll:
+#   Use dynamic instead of static linking.
+# openmp:
+#   Enable OpenMP extensions for all projects.
+# autodep:
+#   No automatic dependency build (one time build).
+# makefile-auto-update:
+#   No rebuild of makefile (one time build).
+# flat-makefile:
+#   Use single makefile.
+# caution:
+#   Proceed configuration without asking when in doubt.
+# lzo:
+#   Don't add lzo support (compression lib, req. lzo >2.x).
+# runpath:
+#   Set runpath for installed $PREFIX location.
+# hard-runpath:
+#   Hard-code runtime path, ignoring LD_LIBRARY_PATH (disallow LD_LIBRARY_PATH override on Linux).
+# debug:
+#   Strip -D_DEBUG and -g, engage -DNDEBUG and -O.
+# with-experimental=Int8GI:
+#   Enable named experimental feature: Int8GI (Use a simple 64-bit type for GI numbers).
+#   See c++/src/build-system/configure.ac lines 1020:1068 for the named options.
+# strip:
+#   Strip binaries at build time (remove debugging symbols)
+# vdb:
+#   Disable VDB/SRA toolkit.
+# z:
+#   Set zlib path (compression lib).
+# bz2:
+#   Set bzlib path (compression lib).
+# krb5:
+#   Disable kerberos (needed on OSX).
+# gnutls:
+#   Disable gnutls.
+# gcrypt:
+#   Disable gcrypt (needed on OSX).
+# sse42
+#   Don't enable SSE 4.2 when optimizing.
+# pcre:
+#   Disable pcre (Perl regex).
 
 # Fixes building on unix (linux and osx)
 export AR="${AR} rcs"
@@ -60,12 +91,15 @@ export AR="${AR} rcs"
 if [[ $(uname) = Linux ]] ; then
     ./configure \
         --with-bin-release \
+        --with-64 \
         --with-mt \
         --with-dll \
         --with-openmp \
+        --without-autodep \
+        --without-makefile-auto-update \
         --with-flat-makefile \
+        --without-caution \
         --without-lzo \
-        --without-zstd \
         --with-hard-runpath \
         --with-runpath=$LIB_INSTALL_DIR \
         --without-debug \
@@ -76,9 +110,7 @@ if [[ $(uname) = Linux ]] ; then
         --with-bz2=$PREFIX \
         --without-krb5 \
         --without-gnutls \
-        --without-sse42 \
-        --without-gcrypt \
-        --without-pcre
+        --without-sse42
 else
     ./configure \
         --with-bin-release \
diff --git a/recipes/blast/build_failure.osx-64.yaml b/recipes/blast/build_failure.osx-64.yaml
deleted file mode 100644
index de9e3cf438772..0000000000000
--- a/recipes/blast/build_failure.osx-64.yaml
+++ /dev/null
@@ -1,104 +0,0 @@
-recipe_sha: d58ac0e00618c06e1088a1a93035e4adcb36ef78f5f709b2dbb0e437fbc7ec1d  # The commit at which this recipe failed to build.
-skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
-log: |2-
-      /opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/lib/libregexp.a(pcreposix.o)
-  duplicate symbol '_islower' in:
-      pcretest.o
-      /opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/lib/libregexp.a(pcreposix.o)
-  duplicate symbol '_tolower' in:
-      pcretest.o
-      /opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/lib/libregexp.a(pcreposix.o)
-  duplicate symbol '_isupper' in:
-      pcretest.o
-      /opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/lib/libregexp.a(pcreposix.o)
-  duplicate symbol '_toupper' in:
-      pcretest.o
-      /opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/lib/libregexp.a(pcreposix.o)
-  duplicate symbol '_ishexnumber' in:
-      pcretest.o
-      /opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/lib/libregexp.a(pcreposix.o)
-  duplicate symbol '_isnumber' in:
-      pcretest.o
-      /opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/lib/libregexp.a(pcreposix.o)
-  duplicate symbol '_isalnum' in:
-      pcretest.o
-      /opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/lib/libregexp.a(pcreposix.o)
-  duplicate symbol '_isphonogram' in:
-      pcretest.o
-      /opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/lib/libregexp.a(pcreposix.o)
-  duplicate symbol '_isideogram' in:
-      pcretest.o
-      /opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/lib/libregexp.a(pcreposix.o)
-  duplicate symbol '_iscntrl' in:
-      pcretest.o
-      /opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/lib/libregexp.a(pcreposix.o)
-  duplicate symbol '_isspecial' in:
-      pcretest.o
-      /opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/lib/libregexp.a(pcreposix.o)
-  duplicate symbol '_isblank' in:
-      pcretest.o
-      /opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/lib/libregexp.a(pcreposix.o)
-  duplicate symbol '_isascii' in:
-      pcretest.o
-      /opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/lib/libregexp.a(pcreposix.o)
-  duplicate symbol '_toascii' in:
-      pcretest.o
-      /opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/lib/libregexp.a(pcreposix.o)
-  duplicate symbol '___wcwidth' in:
-      pcretest.o
-      /opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/lib/libregexp.a(pcreposix.o)
-  duplicate symbol '_isgraph' in:
-      pcretest.o
-      /opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/lib/libregexp.a(pcreposix.o)
-  duplicate symbol '___istype' in:
-      pcretest.o
-      /opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/lib/libregexp.a(pcreposix.o)
-  duplicate symbol '___isctype' in:
-      pcretest.o
-      /opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/lib/libregexp.a(pcreposix.o)
-  duplicate symbol '_isrune' in:
-      pcretest.o
-      /opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/lib/libregexp.a(pcreposix.o)
-  duplicate symbol '_isspace' in:
-      pcretest.o
-      /opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/lib/libregexp.a(pcreposix.o)
-  duplicate symbol '___sputc' in:
-      pcretest.o
-      /opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/lib/libregexp.a(pcreposix.o)
-  duplicate symbol '_isalpha' in:
-      pcretest.o
-      /opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/lib/libregexp.a(pcreposix.o)
-  ld: 567 duplicate symbols for architecture x86_64
-  clang-14: error: linker command failed with exit code 1 (use -v to see invocation)
-  make[2]: *** [/opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/build/Makefile.app:159: test_pcre] Error 1
-  /usr/bin/awk: can't open file make_test_pcre.log.new
-   source line number 4
-  make[1]: *** [/opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/src/build-system/Makefile.meta_l:333: all.nonusr] Error 2
-  make: *** [all_l.real] Error 2
-
-  ------------------------------------------------------
-  Current dir:  /opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/build/util/regexp
-
-  [create_flat_makefile.sh] FAILED (status 2):
-     make
-  grep: /opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/blast/c/ReleaseMT/build/Flat.configuration_log: No such file or directory
-  config.status: error: flat makefile generation failed.
-  Traceback (most recent call last):
-    File "/opt/mambaforge/envs/bioconda/bin/conda-mambabuild", line 10, in <module>
-      sys.exit(main())
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
-      call_conda_build(action, config)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
-      result = api.build(
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
-      return build_tree(
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
-      packages_from_this = build(metadata, stats,
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
-      utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
-      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
-      raise subprocess.CalledProcessError(proc.returncode, _args)
-  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/mambaforge/envs/bioconda/conda-bld/blast_1685482928598/work/conda_build.sh']' returned non-zero exit status 1.
-# Last 100 lines of the build log.
diff --git a/recipes/blast/meta.yaml b/recipes/blast/meta.yaml
index 56cab302b9316..ac83310298c71 100644
--- a/recipes/blast/meta.yaml
+++ b/recipes/blast/meta.yaml
@@ -1,8 +1,9 @@
-{% set version = "2.14.0" %}
-{% set sha256 = "bf477f1b0c3b82f0b7a7094bf003a9a83e37e3b0716c1df799060c4feab17500" %}
+{% set name = "blast" %}
+{% set version = "2.15.0" %}
+{% set sha256 = "6918c370524c8d44e028bf491e8f245a895e07c66c77b261ce3b38d6058216e0" %}
 
 package:
-  name: blast
+  name: {{ name }}
   version: {{ version }}
 
 source:
@@ -24,7 +25,11 @@ source:
       - normbase.patch
 
 build:
-  number: 2
+  number: 1
+  run_exports:
+    # Now, the point releases seem to be only bugfixes at least (but this definitely was not the
+    # case up to v2.2.31)
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   build:
@@ -38,6 +43,7 @@ requirements:
     - entrez-direct
     - ncbi-vdb
     - curl
+    - sqlite =3
   run:
     - zlib
     - bzip2
diff --git a/recipes/blast/run_test.sh b/recipes/blast/run_test.sh
index 87432da8d0e85..e6f7a883f83e2 100755
--- a/recipes/blast/run_test.sh
+++ b/recipes/blast/run_test.sh
@@ -15,6 +15,11 @@ makeblastdb \
    grep -q "added 3 sequences"
 echo PASS
 
+echo -n 'Checking Database integrity... '
+blastdbcheck -full  -dbtype nucl -db testdb | \
+   grep -q "Result=SUCCESS"
+echo PASS
+
 echo -n 'Checking database version... '
 blastdbcmd -info -db testdb -dbtype nucl | \
     awk '/^BLASTDB Version/ {print $NF}' | \
diff --git a/recipes/blastbesties/meta.yaml b/recipes/blastbesties/meta.yaml
index d887737be5278..ea69200a2fbcb 100644
--- a/recipes/blastbesties/meta.yaml
+++ b/recipes/blastbesties/meta.yaml
@@ -1,34 +1,40 @@
+{% set name = "blastbesties" %}
+{% set version = "1.1.2" %}
+
 package:
-  name: blastbesties
-  version: "1.1.1"
+  name: {{ name|lower }}
+  version: {{ version }}
 
 source:
-  url: https://pypi.python.org/packages/86/61/b71bc19d93ac15bf69f2d883ec50ac36b351366d26b81761880ca2775587/blastbesties-1.1.1.tar.gz
-  md5: 42f74b3b5ba2c11ec3a2a39b1dee79ef
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/blastbesties-{{ version }}.tar.gz
+  sha256: 6dce21a9f92d8e47875a020c279e420ed5077d00ced3534844993a26e779e57d
 
 build:
-  number: 2
+  number: 0
   noarch: python
   entry_points:
-    - blastbesties=blastbesties.cmd_rbb:main
+    - blastbesties = blastbesties.app:main
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  run_exports:
+    - {{ pin_subpackage('blastbesties', max_pin="x") }}
 
 requirements:
   host:
-    - python
-    - setuptools
-
+    - python >=3.7
+    - pip
+    - setuptools-scm
   run:
-    - python
+    - python >=3.7
 
 test:
   imports:
     - blastbesties
-
   commands:
     - blastbesties --help
 
 about:
   home: https://github.com/Adamtaranto/blast-besties
-  license: MIT License
+  license: MIT
   summary: 'Rapid discovery of reciprocal best blast pairs from BLAST output files.'
   license_family: MIT
+  license_file: LICENSE
diff --git a/recipes/blockclust/meta.yaml b/recipes/blockclust/meta.yaml
index 57083469dcca1..14c611f30d91b 100644
--- a/recipes/blockclust/meta.yaml
+++ b/recipes/blockclust/meta.yaml
@@ -1,14 +1,19 @@
+{% set name = "blockclust" %}
+{% set version = "1.1.1" %}
+
 package:
-  name: blockclust
-  version: 1.1.0
+  name: {{ name|lower }}
+  version: {{ version }}
 
 source:
-  url: https://github.com/pavanvidem/blockclust/archive/v1.1.0.tar.gz
-  sha256: 2376c567f17537da4ac6eba1f75dd1f56079ea406e7e801c5de1ac9e82c08219
+  url: https://github.com/pavanvidem/blockclust/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 80ee2b32085b93966254083574b2bf3988771ffe28d73775be96a16cfda5579b
 
 build:
-  number: 9
+  number: 0
   skip: True  # [osx or py2k]
+  run_exports:
+    - {{ pin_subpackage('blockclust', max_pin="x") }}
 
 requirements:
   build:
@@ -34,7 +39,8 @@ test:
 
 about:
   home: https://github.com/pavanvidem/blockclust
-  license: GPL
+  license: GPL-2.0-or-later
+  license_family: GPL2
   license_file: LICENSE
   summary: Efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles.
 
diff --git a/recipes/blosum/meta.yaml b/recipes/blosum/meta.yaml
index 88e1045f87f16..c20c944256cbd 100644
--- a/recipes/blosum/meta.yaml
+++ b/recipes/blosum/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "blosum" %}
-{% set version = "2.0.2" %}
+{% set version = "2.0.3" %}
 
 package:
   name: {{ name }}
@@ -7,12 +7,14 @@ package:
 
 source:
   url: https://github.com/not-a-feature/blosum/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: a0e4a44471d6f70b19ec6b936cdf57cf9849bc5f21ef7d3a698b9e9c2e20a00f
+  sha256: 7e061dd6934333068b87d0d900eb437574f3c4acda26de7179c2422dcff74033
 
 build:
   noarch: python
   number: 0
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('blosum', max_pin="x") }}
 
 requirements:
   host:
@@ -24,15 +26,11 @@ requirements:
 test:
   imports:
     - blosum
-  commands:
-    - pip check
-  requires:
-    - pip
 
 about:
   home: https://github.com/not-a-feature/blosum
   license: GPL-3.0-or-later
-  license_family: GPL
+  license_family: GPL3
   license_file: LICENSE
   summary: 'A small module for easy access to BLOSUM matrices without dependencies.'
   description: |
@@ -43,4 +41,3 @@ about:
 extra:
   recipe-maintainers:
     - not-a-feature
-
diff --git a/recipes/bohra/meta.yaml b/recipes/bohra/meta.yaml
index d1f8c10003049..1ba1ae27f4825 100644
--- a/recipes/bohra/meta.yaml
+++ b/recipes/bohra/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "bohra" %}
-{% set version = "2.3.2" %}
-{% set sha256 = "fcdcf59186493bf6f1272d717c7f0ed65fcf453b6461621d555eb5ad19558969" %}
+{% set version = "2.3.6" %}
+{% set sha256 = "3d51bfe235ae95dbe2c020a7f538375b49694b35480263e7c9b07972fdce221c" %}
 
 package:
   name: "{{ name }}"
@@ -15,7 +15,9 @@ build:
   number: 0
   entry_points:
     - bohra=bohra.bohra:main
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('bohra', max_pin="x") }}
 
 requirements:
   host:
@@ -23,6 +25,7 @@ requirements:
     - pip
   run:
     - python >=3.8
+    - altair
     - biopython 1.81
     - nextflow 22.10.6
     - pandas 1.0.5
@@ -38,7 +41,7 @@ requirements:
     - perl-list-moreutils
     - perl-text-csv
     - perl-svg
-    
+
 test:
   imports:
     - bohra
@@ -48,10 +51,11 @@ test:
 
 about:
   home: "https://github.com/MDU-PHL/bohra"
-  license: "GNU General Public v3 (GPLv3)"
+  license: "GPL-3.0-or-later"
   license_family: "GPL3"
   license_file: "LICENSE.txt"
   summary: "Pipeline for analysing Illumina data for microbiological public health."
+  doc_url: "https://github.com/MDU-PHL/bohra/wiki"
 
 extra:
   recipe-maintainers:
diff --git a/recipes/boms/meta.yaml b/recipes/boms/meta.yaml
new file mode 100644
index 0000000000000..4368691e40f3d
--- /dev/null
+++ b/recipes/boms/meta.yaml
@@ -0,0 +1,54 @@
+{% set name = "boms" %}
+{% set version = "1.1.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: c64a867233148dab9d32257e86b127793022f893321a43210ceaafa02870cd7c
+
+build:
+  run_exports:
+    - {{ pin_subpackage('boms', max_pin="x.x") }}
+  skip: true  # [osx or py<39]
+  script: {{ PYTHON }} -m pip install . -vv --no-build-isolation
+  number: 0
+
+requirements:
+  build:
+    - {{ compiler('cxx') }}
+    - {{ compiler('c') }}
+  host:
+    - python
+    - setuptools >=61.0
+    - wheel
+    - pybind11 >=2.11.0
+    - requests
+    - pip
+    - mkl-service
+  run:
+    - python
+    - numpy
+    - mkl
+    - mkl-service
+    - scipy
+    - matplotlib-base
+    - scikit-learn
+
+test:
+  imports:
+    - boms
+  requires:
+    - pip
+
+about:
+  summary: Cell Segmentation for Spatial Transcriptomics Data using BOMS
+  home: https://github.com/ocimakamboj/boms
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - FloWuenne
diff --git a/recipes/bowtie/meta.yaml b/recipes/bowtie/meta.yaml
index 0ac76f61b7f94..b515beadf19d5 100644
--- a/recipes/bowtie/meta.yaml
+++ b/recipes/bowtie/meta.yaml
@@ -13,7 +13,9 @@ source:
 
 build:
   skip: True  # [py<30]
-  number: 6
+  number: 7
+  run_exports:
+    - {{ pin_subpackage("bowtie", max_pin="x.x") }}
 
 requirements:
   build:
@@ -50,6 +52,8 @@ about:
   summary: An ultrafast memory-efficient short read aligner
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:bowtie
     - doi:10.1186/gb-2009-10-3-r25
diff --git a/recipes/bowtie2/build.sh b/recipes/bowtie2/build.sh
index 90c802dd1d54d..9321722a55561 100644
--- a/recipes/bowtie2/build.sh
+++ b/recipes/bowtie2/build.sh
@@ -1,7 +1,14 @@
-#!/bin/bash
+#!/bin/bash -euo
+
+# Fetch third party dependencies 
+# (Git submodules - https://github.com/BenLangmead/bowtie2/blob/a43fa6f43f54989468a294967898f85b9fe4cefa/.gitmodules)
+git clone --branch master https://github.com/simd-everywhere/simde-no-tests.git third_party/simde
+git clone https://github.com/ch4rr0/libsais third_party/libsais
 
 LDFLAGS=""
-make CXX=$CXX CPP=$CXX CC=$CC LDLIBS="-L$PREFIX/lib -lz -lzstd -ltbb -ltbbmalloc -lpthread" WITH_ZSTD=1
+make CXX="${CXX}" CXXFLAGS="${CXXFLAGS} -O3" CPP="${CXX} -I${PREFIX}/include" CC="${CC} -L${PREFIX}/lib" \
+	CFLAGS="${CFLAGS} -O3" LDLIBS="-L$PREFIX/lib -lz -lzstd -ltbb -ltbbmalloc -lpthread" \
+	WITH_ZSTD=1 USE_SAIS=1
 
 binaries="\
 bowtie2 \
@@ -18,9 +25,9 @@ directories="scripts"
 pythonfiles="bowtie2-build bowtie2-inspect"
 
 for i in $binaries; do
-    cp $i $PREFIX/bin && chmod +x $PREFIX/bin/$i
+    cp -rf $i ${PREFIX}/bin && chmod 755 $PREFIX/bin/${i}
 done
 
 for d in $directories; do
-    cp -r $d $PREFIX/bin
+    cp -rf $d ${PREFIX}/bin
 done
diff --git a/recipes/bowtie2/meta.yaml b/recipes/bowtie2/meta.yaml
index 41f8c61665cb0..9c2726762f391 100644
--- a/recipes/bowtie2/meta.yaml
+++ b/recipes/bowtie2/meta.yaml
@@ -1,23 +1,28 @@
-{% set version = "2.5.1" %}
+{% set name = "bowtie2" %}
+{% set version = "2.5.4" %}
 
 package:
-  name: bowtie2
+  name: {{ name }}
   version: {{ version }}
 
 source:
   url: https://github.com/BenLangmead/bowtie2/archive/v{{ version }}.tar.gz
-  sha256: 3fe00f4f89b5dd85fd9317e2168ec93f30dbb75d7950a08516c767d21eca7c27
+  sha256: 841a6a60111b690c11d1e123cb5c11560b4cd1502b5cee7e394fd50f83e74e13
 
 build:
-  number: 2
-  skip: True  # [py2k]
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('bowtie2', max_pin="x") }}
 
 requirements:
   build:
     - {{ compiler('cxx') }}
+    - cmake
     - make
+    - git
   host:
-    - python
+    - llvm-openmp  # [osx]
+    - libgomp  # [linux]
     - zlib
     - zstd
     - tbb-devel
@@ -25,8 +30,6 @@ requirements:
   run:
     - python
     - perl
-    - zlib
-    - zstd
     - tbb
 
 test:
@@ -45,12 +48,17 @@ test:
     - bowtie2-inspect-s --help
 
 about:
-  home: 'http://bowtie-bio.sourceforge.net/bowtie2/index.shtml'
-  license: GPL-3.0-only
+  home: "https://bowtie-bio.sourceforge.net/bowtie2/index.shtml"
+  license: "GPL-3.0-only"
+  license_family: GPL3
   license_file: LICENSE
-  summary: Fast and sensitive gapped read alignment
+  summary: "A fast and sensitive gapped read aligner."
+  dev_url: "https://github.com/BenLangmead/bowtie2"
+  doc_url: "https://github.com/BenLangmead/bowtie2/blob/master/README.md"
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:bowtie2
     - doi:10.1038/nmeth.1923
diff --git a/recipes/bracken/meta.yaml b/recipes/bracken/meta.yaml
index 2187bb25755d4..0e4c62f47a304 100644
--- a/recipes/bracken/meta.yaml
+++ b/recipes/bracken/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "2.8" %}
-{% set sha256 = "b0c8a803cc020b7d1cbca47b53e71e874d9688b836911e4a4b71b0e4b826b61a" %}
+{% set version = "2.9" %}
+{% set sha256 = "b8fd43fc396a2184d9351fb4a459f95ae9bb5865b195a18e22436f643044c788" %}
 
 package:
   name: bracken
@@ -14,7 +14,9 @@ source:
 
 build:
   skip: True  # [osx]
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('bracken', max_pin="x") }}
 
 requirements:
   build:
diff --git a/recipes/bracken/py3.patch b/recipes/bracken/py3.patch
index b1704f2dab284..1116a0b043d3a 100644
--- a/recipes/bracken/py3.patch
+++ b/recipes/bracken/py3.patch
@@ -1,9 +1,5 @@
----
- analysis_scripts/combine_bracken_outputs.py | 4 ++--
- 1 file changed, 2 insertions(+), 2 deletions(-)
-
-diff --git a/analysis_scripts/combine_bracken_outputs.py b/analysis_scripts/combine_bracken_outputs.py
-index 0d1e0a1..e00137a 100644
+diff --git a/combine_bracken_outputs.py b/combine_bracken_outputs.py
+index 19d4068..09c6530 100644
 --- a/analysis_scripts/combine_bracken_outputs.py
 +++ b/analysis_scripts/combine_bracken_outputs.py
 @@ -110,7 +110,7 @@ def main():
@@ -15,13 +11,3 @@ index 0d1e0a1..e00137a 100644
              if len(level) == 0:
                  level = taxlvl 
              elif level != taxlvl:
-@@ -130,7 +130,7 @@ def main():
-     #Print each sample 
-     for name in sample_counts:
-         #Print information for classification
--        taxid = sample_counts[name].keys()[0]
-+        taxid = list(sample_counts[name].keys())[0]
-         o_file.write("%s\t%s\t%s" % (name, taxid, level)) 
-         #Calculate and print information per sample 
-         for sample in all_samples:
--- 
diff --git a/recipes/braker3/build.sh b/recipes/braker3/build.sh
index d84e45e0d2e7f..36cee98375ec7 100644
--- a/recipes/braker3/build.sh
+++ b/recipes/braker3/build.sh
@@ -1,4 +1,5 @@
 #!/bin/bash
+
 # Copy scripts
 mkdir -p ${PREFIX}/bin
 chmod +x scripts/*.pl
@@ -6,10 +7,3 @@ cp scripts/*.pl ${PREFIX}/bin/
 cp scripts/*.pm ${PREFIX}/bin/
 cp scripts/*.py ${PREFIX}/bin/
 cp -r scripts/cfg/ ${PREFIX}/bin/
-
-# install TSEBRA
-cp tsebra/bin/* ${PREFIX}/bin
-mkdir -p ${SP_DIR}/tsebra_mod
-mv tsebra/bin/* ${SP_DIR}/tsebra_mod
-mkdir ${PREFIX}/config
-mv tsebra/config/* ${PREFIX}/config
diff --git a/recipes/braker3/meta.yaml b/recipes/braker3/meta.yaml
index dec3752a3c767..174a5deb011ec 100644
--- a/recipes/braker3/meta.yaml
+++ b/recipes/braker3/meta.yaml
@@ -1,21 +1,19 @@
 {% set name = "BRAKER3" %}
-{% set version = "3.0.3" %}
-{% set sha256 = "3cb65c3bc51abc2a5217927c04a65739062e59c54e938504520993a193a671b4" %}
+{% set version = "3.0.8" %}
+{% set sha256 = "f2623290c3007a3e42719a0bb2713bec7226db222bfef742895a9d5d0b4ee526" %}
 
 package:
   name: "{{ name|lower }}"
   version: "{{ version }}"
-
 source:
 - url: https://github.com/Gaius-Augustus/BRAKER/archive/refs/tags/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
-- url: https://github.com/Gaius-Augustus/TSEBRA/archive/refs/tags/v.1.1.1.tar.gz
-  sha256: 0426c243888135ee3fd6ea0ca9f37eb4af03dd117498165257fa756f59d49ce9
-  folder: tsebra
 
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('braker3', max_pin='x') }}
 
 requirements:
   run:
@@ -51,6 +49,8 @@ requirements:
     - cdbtools >=0.99
     - genomethreader >=1.7.0
     - diamond >=2.1.6
+    - tsebra
+    - compleasm
       #    - GeneMark-ES/ET/EP+ >=4.64
       #    - prothint >=2.6.0
 
diff --git a/recipes/breseq/meta.yaml b/recipes/breseq/meta.yaml
index ee573da392da4..8696fa41b547e 100644
--- a/recipes/breseq/meta.yaml
+++ b/recipes/breseq/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.38.1" %}
+{% set version = "0.38.3" %}
 
 package:
   name: breseq
@@ -6,10 +6,12 @@ package:
 
 source:
   url: https://github.com/barricklab/breseq/releases/download/v{{ version }}/breseq-{{ version }}-Source.tar.gz
-  sha256: "92af34f7248f7c8cf65951e1b86ffc0d6f7446dbe9d3323aa43c577ea1ff48b3"
+  sha256: "4d0c772fb87947e028094839f090ee130c87d0d5951adf5b845b79ac87449900"
 
 build:
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('breseq', max_pin="x.x") }}
 
 requirements:
   build:
@@ -31,8 +33,9 @@ test:
 
 about:
   home: https://github.com/barricklab/breseq
-  license: GPL-3.0
+  license: GPL-2.0-or-later
   license_family: GPL
   license_file: COPYING
   summary: A computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing
     data.
+  doc_url: "https://barricklab.org/twiki/pub/Lab/ToolsBacterialGenomeResequencing/documentation/"
diff --git a/recipes/brooklyn_plot/meta.yaml b/recipes/brooklyn_plot/meta.yaml
index 2ea875c760e46..1e8515815024b 100644
--- a/recipes/brooklyn_plot/meta.yaml
+++ b/recipes/brooklyn_plot/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "brooklyn_plot" %}
-{% set version = "0.0.3" %}
+{% set version = "0.0.4" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,23 +7,25 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: a3b4c7174515d61e7a1386e0ac0ae49087f1a9c9b12eb952196b6b0b0b6f1bee
+  sha256: 6e9821999aa52b10710e59c1cd4777d6b364fef806da949e61058e6d311b97fa
 
 build:
   number: 0
   entry_points:
     - brooklyn_plot = brooklyn_plot.__main__:main
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('brooklyn_plot', max_pin="x.x") }}
 
 requirements:
   host:
     - pip
-    - python >=3.6
+    - python >=3.7
   run:
     - numpy <1.24
     - pandas
-    - python >=3.6
+    - python >=3.7
     - scanpy
     - scipy
 
diff --git a/recipes/btllib/build.sh b/recipes/btllib/build.sh
index d87279c0cadac..aac83086b89e5 100644
--- a/recipes/btllib/build.sh
+++ b/recipes/btllib/build.sh
@@ -1,16 +1,15 @@
 #!/bin/bash
 
-export CXXFLAGS="${CXXFLAGS} -D_LIBCPP_DISABLE_AVAILABILITY"
+export INCLUDES="-I{PREFIX}/include"
+export LIBPATH="-L${PREFIX}/lib"
+export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
+export CXXFLAGS="${CXXFLAGS} -O3 -I${PREFIX}/include -D_LIBCPP_DISABLE_AVAILABILITY"
 
-./compile
+CXX="${CXX}" CXXFLAGS="${CXXFLAGS}" meson setup --buildtype release --prefix "${PREFIX}" --strip build/ -Db_coverage=false
 
-mkdir -p ${PREFIX}/bin/
-mkdir -p ${PREFIX}/include/
-mkdir -p ${PREFIX}/lib/
+cd build
 
-cp -r install/bin/* ${PREFIX}/bin/
-cp -r install/include/* ${PREFIX}/include/
-cp -r install/lib/* ${PREFIX}/lib/
+ninja -v install
 
 # python wrappers:
-$PYTHON -m pip install install/lib/btllib/python
+$PYTHON -m pip install "${PREFIX}/lib/btllib/python" --no-deps --no-build-isolation -vvv
diff --git a/recipes/btllib/build_failure.osx-64.yaml b/recipes/btllib/build_failure.osx-64.yaml
deleted file mode 100644
index b1b23121063ba..0000000000000
--- a/recipes/btllib/build_failure.osx-64.yaml
+++ /dev/null
@@ -1,104 +0,0 @@
-recipe_sha: b5330eaa8f450048b15b4e0a4ac3067bf62e46a1e378b96516730df6c583866d  # The commit at which this recipe failed to build.
-skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
-log: |-
-  [58/59] Installing files.
-  Installing libbtllib.a to $SRC_DIR/install/lib
-  Skipping RPATH fixing
-  Installing wrappers/python/_btllib.so to $SRC_DIR/install/lib/btllib/python/btllib
-  Skipping RPATH fixing
-  Installing recipes/indexlr to $SRC_DIR/install/bin
-  Skipping RPATH fixing
-  Installing recipes/randseq to $SRC_DIR/install/bin
-  Skipping RPATH fixing
-  Installing recipes/mi_bf_generate to $SRC_DIR/install/bin
-  Skipping RPATH fixing
-  Installing $SRC_DIR/include/btllib/seq_reader_multiline_fastq_module.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/include/btllib/process_pipeline.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/include/btllib/mi_bloom_filter.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/include/btllib/nthash_lowlevel.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/include/btllib/seq_reader_gfa2_module.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/include/btllib/data_stream.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/include/btllib/seq_reader_fastq_module.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/include/btllib/nthash_consts.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/include/btllib/order_queue.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/include/btllib/aahash.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/include/btllib/indexlr.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/include/btllib/status.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/include/btllib/counting_bloom_filter.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/include/btllib/aahash_consts.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/include/btllib/graph.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/include/btllib/bloom_filter.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/include/btllib/randseq.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/include/btllib/seq.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/include/btllib/seq_reader.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/include/btllib/seq_reader_fasta_module.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/include/btllib/nthash.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/include/btllib/seq_reader_multiline_fasta_module.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/include/btllib/util.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/include/btllib/cstring.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/include/btllib/seq_writer.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/include/btllib/seq_reader_sam_module.hpp to $SRC_DIR/install/include/btllib
-  Installing $SRC_DIR/wrappers/python/btllib.py to $SRC_DIR/install/lib/btllib/python/btllib
-  Installing /private/tmp/btllib-build-dzadL9GTQASFPuHRFG4M0A/wrappers/python/setup.py to $SRC_DIR/install/lib/btllib/python
-  Running custom install script '$SRC_DIR/scripts/install-cpptoml'
-  Running custom install script '$SRC_DIR/scripts/install-sdsl-lite'
-
-  Build finished successfully!
-  btllib installation can be found at: $SRC_DIR/install
-  Processing ./install/lib/btllib/python
-    Preparing metadata (setup.py): started
-    Preparing metadata (setup.py): finished with status 'done'
-  Building wheels for collected packages: btllib
-    Building wheel for btllib (setup.py): started
-    Building wheel for btllib (setup.py): finished with status 'done'
-    Created wheel for btllib: filename=btllib-1.6.0-py3-none-any.whl size=673941 sha256=1df681e706445a63e978f5ae5d950166dacf8546ecbedfd7b3a11f89ee9d5142
-    Stored in directory: /private/tmp/pip-ephem-wheel-cache-byvyhow3/wheels/fd/de/91/c0ac23923f09e9244ae72dd27c8d91edf6e02332772e8fb05f
-  Successfully built btllib
-  Installing collected packages: btllib
-  Successfully installed btllib-1.6.0
-
-  Resource usage statistics from building btllib:
-     Process count: 12
-     CPU time: Sys=0:00:14.7, User=0:03:19.7
-     Memory: 590.5M
-     Disk usage: 60.2K
-     Time elapsed: 0:02:40.9
-
-
-  Packaging btllib
-  INFO:conda_build.build:Packaging btllib
-  Packaging btllib-1.6.0-py310hd3d38e4_1
-  INFO:conda_build.build:Packaging btllib-1.6.0-py310hd3d38e4_1
-  compiling .pyc files...
-  number of files: 157
-  Traceback (most recent call last):
-    File "/opt/mambaforge/envs/bioconda/bin/conda-mambabuild", line 10, in <module>
-      sys.exit(main())
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
-      call_conda_build(action, config)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
-      result = api.build(
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
-      return build_tree(
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
-      packages_from_this = build(metadata, stats,
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 2358, in build
-      newly_built_packages = bundlers[pkg_type](output_d, m, env, stats)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 1659, in bundle_conda
-      files = post_process_files(metadata, initial_files)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 1505, in post_process_files
-      post_build(m, new_files, build_python=python)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/post.py", line 1318, in post_build
-      post_process_shared_lib(m, f, prefix_files, host_prefix)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/post.py", line 1266, in post_process_shared_lib
-      mk_relative_osx(path, host_prefix, m, files=files, rpaths=rpaths)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/post.py", line 397, in mk_relative_osx
-      names = macho.otool(path, prefix)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/os_utils/macho.py", line 194, in otool
-      lines = check_output([otool, '-l', path],
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/subprocess.py", line 415, in check_output
-      return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/subprocess.py", line 516, in run
-      raise CalledProcessError(retcode, process.args,
-  subprocess.CalledProcessError: Command '['/opt/mambaforge/envs/bioconda/conda-bld/btllib_1686051065758/_build_env/bin/llvm-otool', '-l', '/opt/mambaforge/envs/bioconda/conda-bld/btllib_1686051065758/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/btllib/python/btllib/_btllib.so']' died with <Signals.SIGABRT: 6>.
-# Last 100 lines of the build log.
diff --git a/recipes/btllib/meta.yaml b/recipes/btllib/meta.yaml
index 7e5179de80cf8..e981478394a87 100644
--- a/recipes/btllib/meta.yaml
+++ b/recipes/btllib/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "btllib" %}
-{% set version = "1.6.2" %}
+{% set version = "1.7.2" %}
 
 package:
   name: {{ name|lower }}
@@ -7,37 +7,41 @@ package:
 
 source:
   url: https://github.com/bcgsc/btllib/releases/download/v{{ version }}/{{ name|lower }}-{{ version }}.tar.gz
-  sha256: 06af0bccd68443bc6351d1d6d46599ae2a6e94752ae5fdf973067a77740d751c
+  sha256: 4c1bb29fdbd7d9a39f960360a5d4b224d22189862b948027a8e3ecd67c635926
 
 build:
-  skip: true  # [py < 38 or win]
-  number: 0
+  skip: True  # [py < 38 or win]
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('btllib', max_pin="x") }}
 
 requirements:
   build:
     - {{ compiler('cxx') }}
+    - cmake
+    - meson
+    - ninja
   host:
     - python
     - pip
-    - wheel
-    - meson
-    - ninja
-    - cmake
     - llvm-openmp  # [osx]
     - libgomp      # [linux]
+    - samtools
+    - swig
+    - doxygen
   run:
     - python
     - samtools
+    - llvm-openmp  # [osx]
+    - libgomp      # [linux]
     - pigz
-    - gzip # alternative to pigz
+    - gzip  # alternative to pigz
     - tar
     - bzip2
     - xz
     - lrzip
     - zip
     - wget
-    - llvm-openmp  # [osx]
-    - libgomp      # [linux]
 
 test:
   commands:
@@ -47,6 +51,14 @@ test:
 
 about:
   home: https://github.com/bcgsc/btllib
-  license: GPL-3.0
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
   summary: 'Bioinformatics common code library in C++ with Python wrappers, from Bioinformatics Technology Lab'
+  doc_url: https://bcgsc.github.io/btllib/
+  dev_url: https://github.com/bcgsc/btllib
+
+extra:
+  identifiers:
+    - doi:10.21105/joss.04720
+    - doi:10.1093/bioadv/vbad162
diff --git a/recipes/busco/0001-Add-default-config-path-within-prefix-updated.patch b/recipes/busco/0001-Add-default-config-path-within-prefix-updated.patch
index 46f2d39e219fc..3d375e51e4c16 100644
--- a/recipes/busco/0001-Add-default-config-path-within-prefix-updated.patch
+++ b/recipes/busco/0001-Add-default-config-path-within-prefix-updated.patch
@@ -1,6 +1,6 @@
 --- a/src/busco/ConfigManager.py
 +++ b/src/busco/ConfigManager.py
-@@ -42,10 +42,12 @@ class BuscoConfigManager:
+@@ -44,11 +44,13 @@ class BuscoConfigManager:
                  return
          except KeyError:
              pass
@@ -8,13 +8,14 @@
 -            os.environ.get("BUSCO_CONFIG_FILE"), os.R_OK
 -        ):
 -            self.config_file = os.environ.get("BUSCO_CONFIG_FILE")
+-            self.run_stats["config_file"] = "BUSCO_CONFIG_FILE environment variable"
 +        config_file = (
 +            os.environ.get("BUSCO_CONFIG_FILE")
 +            or "/opt/anaconda1anaconda2anaconda3/share/busco/config.ini"
 +        )
 +        if config_file and os.access(config_file, os.R_OK):
-+            self.config_file = config_file
++             self.config_file = config_file
++             self.run_stats["config_file"] = "BUSCO_CONFIG_FILE environment variable"
          else:
              self.config_file = "local environment"
-         return self.config_file
-
+             self.run_stats["config_file"] = "local environment"
diff --git a/recipes/busco/0001-Add-default-config-path-within-prefix.patch b/recipes/busco/0001-Add-default-config-path-within-prefix.patch
deleted file mode 100644
index 32b151b252be4..0000000000000
--- a/recipes/busco/0001-Add-default-config-path-within-prefix.patch
+++ /dev/null
@@ -1,14 +0,0 @@
---- src/busco/ConfigManager.py
-+++ src/busco/ConfigManager.py
-@@ -32,8 +32,9 @@
-                 return
-         except KeyError:
-             pass
--        if os.environ.get("BUSCO_CONFIG_FILE") and os.access(os.environ.get("BUSCO_CONFIG_FILE"), os.R_OK):
--            self.config_file = os.environ.get("BUSCO_CONFIG_FILE")
-+        config_file = os.environ.get("BUSCO_CONFIG_FILE") or "/opt/anaconda1anaconda2anaconda3/share/busco/config.ini"
-+        if config_file and os.access(config_file, os.R_OK):
-+            self.config_file = config_file
-         else:
-             raise SystemExit("Please specify a BUSCO config file using either "
-                              "(i) an environment variable by entering 'export BUSCO_CONFIG_FILE=/path/to/config.ini' "
diff --git a/recipes/busco/0001-Set-conda-distribution.patch b/recipes/busco/0001-Set-conda-distribution.patch
new file mode 100644
index 0000000000000..68091d67a5b1f
--- /dev/null
+++ b/recipes/busco/0001-Set-conda-distribution.patch
@@ -0,0 +1,11 @@
+--- a/src/busco/run_BUSCO.py
++++ b/src/busco/run_BUSCO.py
+@@ -126,7 +126,7 @@ class BuscoMaster:
+         elif os.path.exists("/.singularity.d"):
+             self.run_data["distribution"] = "singularity"
+         else:
+-            self.run_data["distribution"] = "manual"
++            self.run_data["distribution"] = "conda"
+ 
+     def get_download_url(self):
+         if self.config.getboolean("busco_run", "offline"):
diff --git a/recipes/busco/meta.yaml b/recipes/busco/meta.yaml
index db7d4c798bed7..528eb257d49c9 100644
--- a/recipes/busco/meta.yaml
+++ b/recipes/busco/meta.yaml
@@ -1,5 +1,6 @@
-{% set version = "5.4.7" %}
-{% set sha256 = "5d549cc69cefa08bd1e312af50895384ae494a580e40eaf2d4989ce9845ef5e4" %}
+{% set name = "busco" %}
+{% set version = "5.7.1" %}
+{% set sha256 = "d57066b68d533f0b86518653430ba47b748ef14db56d2a992601d3e26096cad6" %}
 
 package:
   name: busco
@@ -8,12 +9,15 @@ package:
 build:
   number: 0
   noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 source:
   url: https://gitlab.com/ezlab/busco/-/archive/{{ version }}/busco-{{ version }}.tar.gz
   sha256: {{ sha256 }}
   patches:
     - 0001-Add-default-config-path-within-prefix-updated.patch
+    - 0001-Set-conda-distribution.patch
 
 requirements:
   host:
@@ -23,20 +27,22 @@ requirements:
     - blast >=2.10.1 # There is a multithreading problem for all BLAST versions between 2.4 and 2.10.0
     - hmmer >=3.1b2 # sepp needs this version
     - augustus >=3.3
-    - biopython
+    - biopython >=1.79
     - prodigal
     - sepp >=4.3.10
     - dendropy <4.6.0  # necessary temporarily until SEPP updates their codebase or recipe
     - metaeuk >=6.a5d39d9 # needed for gff bug fix
     - pandas
     - bbmap
+    - miniprot
+    - requests
   run:
     - python >=3.3
     - wget
     - blast >=2.10.1 # There is a multithreading problem for all BLAST versions between 2.4 and 2.10.0
     - hmmer >=3.1b2 # sepp needs this version
     - augustus >=3.3
-    - biopython
+    - biopython >=1.79
     - r-base
     - r-ggplot2 >=2.2.1
     - prodigal
@@ -45,6 +51,8 @@ requirements:
     - metaeuk >=6.a5d39d9 # needed for gff bug fix
     - pandas
     - bbmap
+    - miniprot
+    - requests
     - fonts-conda-ecosystem
 
 test:
@@ -56,14 +64,16 @@ test:
     - test_data
 
 about:
-  home: http://busco.ezlab.org/
+  home: https://busco.ezlab.org/
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary: Assessment of assembly completeness using Universal Single Copy Orthologs
   description: BUSCO provides measures for quantitative assessment of genome
            assembly, gene set, and transcriptome completeness based on
            evolutionarily informed expectations of gene content from
            near-universal single-copy orthologs selected from OrthoDB.
+  dev_url: https://gitlab.com/ezlab/busco
 
 extra:
   container:
diff --git a/recipes/busco/run_test.sh b/recipes/busco/run_test.sh
index 386e4ac6b6a81..a6278750791d7 100644
--- a/recipes/busco/run_test.sh
+++ b/recipes/busco/run_test.sh
@@ -14,3 +14,4 @@ optimize_augustus.pl
 hmmsearch -h
 run_sepp.py -h
 metaeuk -h
+miniprot --version
diff --git a/recipes/buscolite/meta.yaml b/recipes/buscolite/meta.yaml
new file mode 100644
index 0000000000000..7f4e086d17901
--- /dev/null
+++ b/recipes/buscolite/meta.yaml
@@ -0,0 +1,48 @@
+{% set name = "buscolite" %}
+{% set version = "23.10.26" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/buscolite-{{ version }}.tar.gz
+  sha256: c641dc6c702fa198fd6fa661b756aedde4468ea591c8c64f8b8bd9c8a865b72d
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - buscolite = buscolite.__main__:main
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  run_exports:
+    - {{ pin_subpackage('buscolite', max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.6
+    - pip
+  run:
+    - python >=3.6
+    - augustus >=3.5.0
+    - miniprot
+    - natsort
+    - pyhmmer
+    - pyfastx
+
+test:
+  imports:
+    - buscolite
+  commands:
+    - buscolite --help
+
+about:
+  home: https://github.com/nextgenusfs/buscolite
+  summary: 'buscolite: busco analysis for gene predictions'
+  license: BSD-2-Clause
+  license_family: BSD
+  license_file: LICENSE.md
+
+extra:
+  recipe-maintainers:
+    - nextgenusfs
diff --git a/recipes/bustools/meta.yaml b/recipes/bustools/meta.yaml
index 9842c2c986e53..1e1cf6991bd0f 100644
--- a/recipes/bustools/meta.yaml
+++ b/recipes/bustools/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.43.0" %}
+{% set version = "0.43.2" %}
 
 package:
   name: bustools
@@ -6,10 +6,12 @@ package:
 
 source:
   url: https://github.com/BUStools/bustools/archive/v{{ version }}.tar.gz
-  sha256: a881fd273e4242a422a60e69b2d47210880fba855346a13efbc5480e7a2f9721
+  sha256: ad5816152644ee615316daecf5883183994bd7cc96e6c008439123f4cd750b1f
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage('bustools', max_pin="x.x") }}
 
 requirements:
   build:
@@ -22,11 +24,12 @@ requirements:
 
 test:
   commands:
-    - bustools sort 
+    - bustools sort
 
 about:
   home: https://github.com/BUStools/bustools
-  license: BSD 2-Clause "Simplified" License
+  license: BSD-2-Clause "Simplified" License
+  license_family: BSD
   license_file: LICENSE
   summary: |
-    bustools is a program for manipulating BUS files for single cell RNA-Seq datasets.       
+    bustools is a program for manipulating BUS files for single cell RNA-Seq datasets.
diff --git a/recipes/bwa/Makefile.patch b/recipes/bwa/Makefile.patch
deleted file mode 100644
index 5a26928815dc6..0000000000000
--- a/recipes/bwa/Makefile.patch
+++ /dev/null
@@ -1,16 +0,0 @@
-diff --git a/Makefile b/Makefile
-index 7151435..2f0a4fe 100644
---- a/Makefile
-+++ b/Makefile
-@@ -1,9 +1,9 @@
--CC=			gcc
-+#CC=			gcc
- #CC=			clang --analyze
- CFLAGS=		-g -Wall -Wno-unused-function -O2
- WRAP_MALLOC=-DUSE_MALLOC_WRAPPERS
- AR=			ar
--DFLAGS=		-DHAVE_PTHREAD $(WRAP_MALLOC)
-+DFLAGS=		-DHAVE_PTHREAD $(WRAP_MALLOC) $(LDFLAGS)
- LOBJS=		utils.o kthread.o kstring.o ksw.o bwt.o bntseq.o bwa.o bwamem.o bwamem_pair.o bwamem_extra.o malloc_wrap.o \
- 			QSufSort.o bwt_gen.o rope.o rle.o is.o bwtindex.o
- AOBJS=		bwashm.o bwase.o bwaseqio.o bwtgap.o bwtaln.o bamlite.o \
diff --git a/recipes/bwa/build.sh b/recipes/bwa/build.sh
index a8ff3c2d2b692..6bdafb538cade 100644
--- a/recipes/bwa/build.sh
+++ b/recipes/bwa/build.sh
@@ -1,9 +1,6 @@
 #!/bin/bash
 
-export C_INCLUDE_PATH=${PREFIX}/include
-export LIBRARY_PATH=${PREFIX}/lib
-
-make CFLAGS="${CFLAGS} -fcommon"
+make CC="$CC" CFLAGS="$CFLAGS" CPPFLAGS="$CPPFLAGS" LDFLAGS="$LDFLAGS"
 mkdir -p $PREFIX/bin
 mkdir -p $PREFIX/share/man/man1
 cp bwa $PREFIX/bin
diff --git a/recipes/bwa/meta.yaml b/recipes/bwa/meta.yaml
index b781e21c89e93..c4b7f382317b3 100644
--- a/recipes/bwa/meta.yaml
+++ b/recipes/bwa/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.7.17" %}
-{% set sha256 = "980b9591b61c60042c4a39b9e31ccaad8d17ff179d44d347997825da3fdf47fd" %}
+{% set version = "0.7.18" %}
+{% set sha256 = "194788087f7b9a77c0114aa481b2ef21439f6abab72488c83917302e8d0e7870" %}
 
 package:
   name: bwa
@@ -8,11 +8,11 @@ package:
 source:
   url: https://github.com/lh3/bwa/archive/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
-  patches:
-    - Makefile.patch
 
 build:
-  number: 11
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("bwa", max_pin="x.x") }}
 
 requirements:
   build:
@@ -21,7 +21,6 @@ requirements:
   host:
     - zlib
   run:
-    - zlib
     - perl
 
 test:
@@ -37,6 +36,8 @@ about:
   summary: The BWA read mapper.
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:bwa
     - usegalaxy-eu:bwa_mem
diff --git a/recipes/bx-python/meta.yaml b/recipes/bx-python/meta.yaml
index bbf510cd6ac66..61d42af5848fa 100644
--- a/recipes/bx-python/meta.yaml
+++ b/recipes/bx-python/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "bx-python" %}
-{% set version = "0.10.0" %}
-{% set sha256 = "bfe9541d7b18a98e907b085e31f58d3989fbca4dc667c4ae48c33b753e0e2da8" %}
+{% set version = "0.11.0" %}
+{% set sha256 = "2cf8872572817e0d36145cc2711889df5729987ffed4e51280da1e3c2ccb9429" %}
 
 package:
   name: {{ name|lower }}
@@ -11,9 +11,11 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 0
-  skip: True  # [py < 37]
-  script: {{ PYTHON }} -m pip install . --use-pep517 --no-deps -vvv
+  number: 1
+  skip: True  # [py < 38]
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin='x.x') }}
 
 requirements:
   build:
@@ -22,9 +24,6 @@ requirements:
     - python
     - cython
     - pip
-    - setuptools
-    - wheel
-    - python-lzo
     - numpy
     - zlib
   run:
@@ -60,8 +59,10 @@ about:
   license_family: MIT
   license_file: LICENSE
   doc_url: 'https://buildmedia.readthedocs.org/media/pdf/bx-python/latest/bx-python.pdf'
-  dev_url: 'https://pypi.org/project/bx-python/'
+  dev_url: 'https://github.com/bxlab/bx-python'
 
 extra:
   identifiers:
     - biotools:bx-python
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/cadd-scripts/meta.yaml b/recipes/cadd-scripts/meta.yaml
index 06120015ec56c..57183b15af886 100644
--- a/recipes/cadd-scripts/meta.yaml
+++ b/recipes/cadd-scripts/meta.yaml
@@ -1,17 +1,19 @@
-{% set version = "1.6" %}
-{% set sha256 = "c02ebb88beebe1a4433e4f70da03ee4af062212189c30ef99a07cbedf5f44eb6" %}
+{% set version = "1.7" %}
+{% set sha256 = "46f06c31adc7bdde612c60120f892f2a622494b02812fc047e0d3cee6bd25a0f" %}
 
 package:
   name: cadd-scripts
   version: {{ version }}
 
 source:
-  url: https://github.com/kircherlab/CADD-scripts/archive/CADD{{ version }}.tar.gz
+  url: https://github.com/kircherlab/CADD-scripts/archive/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
 
 build:
-  number: 1
+  number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('cadd-scripts', max_pin="x") }}
 
 requirements:
   run:
diff --git a/recipes/cafe/meta.yaml b/recipes/cafe/meta.yaml
index b3e946cc15d5d..09aead5b1a062 100644
--- a/recipes/cafe/meta.yaml
+++ b/recipes/cafe/meta.yaml
@@ -1,17 +1,19 @@
-{% set version = "5.0.0" %}
-{% set sha256 = "9e6dfd27fb915ba927f007e1f851630ff0547589b8196bd5f4606f3b23a78118" %}
+{% set version = "5.1.0" %}
+{% set sha256 = "71871bdc74c2ffc7c1c0f4500f4742f2ff46a15cfaba78dc179d21bb1ba67ba8" %}
 
 package:
   name: cafe
   version: {{ version }}
 
 source:
-  url: https://github.com/hahnlab/CAFE5/releases/download/v5.0/CAFE5-{{ version }}.tar.gz
+  url: https://github.com/hahnlab/CAFE5/releases/download/v5.1/CAFE5-{{ version }}.tar.gz
   sha256: {{ sha256 }}
 
 build:
-  number: 3
+  number: 0
   skip: True # [osx]
+  run_exports:
+    - {{ pin_subpackage('cafe', max_pin="x.x") }}
 
 requirements:
   build:
diff --git a/recipes/calisp/meta.yaml b/recipes/calisp/meta.yaml
index 3e78fb33fdce3..b120fabd72efd 100644
--- a/recipes/calisp/meta.yaml
+++ b/recipes/calisp/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "3.0.12" %}
+{% set version = "3.0.13" %}
 {% set name = "calisp" %}
-{% set sha256 = "0f855ab0642b353195025062b174951040c4f47aea33496b2e4d7021e88a903a" %}
+{% set sha256 = "ebd848548c6bfd00da234f9f9ffcadc6e8a83adfc68f47897f1a13aab51368ec" %}
 
 package:
   name: {{ name }}
@@ -10,6 +10,8 @@ build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vvv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
diff --git a/recipes/callingcardstools/meta.yaml b/recipes/callingcardstools/meta.yaml
index 5efa9d40f727b..71fe9244deaa1 100644
--- a/recipes/callingcardstools/meta.yaml
+++ b/recipes/callingcardstools/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "callingcardstools" %}
-{% set version = "1.0.0" %}
+{% set version = "1.5.2" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,33 +7,31 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 74a20d1eb22f7bdf3373e70e57737caefe4ea63f115e975dba6c04be814288fd
+  sha256: 7ee834c5e7855d1613f6eb9759f7ea0496e70ffbf0b132ab9b76f03685cf652e
 
 build:
   noarch: python
-  number: 1
+  number: 0
   entry_points:
     - callingcardstools = callingcardstools:__main__.main
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('callingcardstools', max_pin="x") }}
 
 requirements:
   host:
-    - biopython
-    - edlib >=1.3.9
-    - numpy
-    - pandas
     - pip
-    - pysam
-    - poetry
-    - python >=3.9
+    - poetry-core
+    - python >=3.8
   run:
     - biopython
-    - edlib >=1.3.9
+    - python-edlib >=1.3.9
     - numpy
     - pandas
     - pysam
-    - poetry
-    - python >=3.9
+    - python >=3.8
+    - scipy >=1.11.4
+    - pyranges >=0.0.129
 
 test:
   imports:
diff --git a/recipes/cami-amber/meta.yaml b/recipes/cami-amber/meta.yaml
index daa51ee4638e5..0c4f04ed2f084 100644
--- a/recipes/cami-amber/meta.yaml
+++ b/recipes/cami-amber/meta.yaml
@@ -10,8 +10,14 @@ source:
 
 build:
   noarch: python
-  number: 0
-  script: python -m pip install --no-deps --ignore-installed .
+  number: 1
+  run_exports:
+    - {{ pin_subpackage("cami-amber", max_pin="x.x") }}
+  script:
+    - python -m pip install --no-deps --ignore-installed .
+    - cp ./src/utils/add_length_column.py $PREFIX/bin
+    - cp ./src/utils/convert_fasta_bins_to_biobox_format.py $PREFIX/bin
+    - cp ./src/utils/argparse_parents.py $PREFIX/bin
 
 requirements:
   host:
@@ -31,6 +37,8 @@ requirements:
 test:
   commands:
     - amber.py --help
+    - add_length_column.py -h
+    - convert_fasta_bins_to_biobox_format.py -h
 
 about:
   home: https://github.com/CAMI-challenge/AMBER
diff --git a/recipes/cami-opal/meta.yaml b/recipes/cami-opal/meta.yaml
index 84400f300d9bf..20647dc9c847e 100644
--- a/recipes/cami-opal/meta.yaml
+++ b/recipes/cami-opal/meta.yaml
@@ -1,43 +1,50 @@
-{% set version = "1.0.11" %}
+{% set name = "cami-opal" %}
+{% set version = "1.0.12" %}
+{% set sha256 = "f8ed286472106332d309ced2504b8fa729c03f6b9d72d8db4faabe726f033f87" %}
 
 package:
-  name: cami-opal
+  name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url:  https://pypi.io/packages/source/c/cami-opal/cami-opal-{{ version }}.tar.gz
-  sha256: 3a3eaa3243d9fd8be55b6b67bbc149efc4174cac6303ab53f4126a029c215ff3
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/cami-opal-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
 
 build:
-  noarch: python
   number: 0
-  script: python -m pip install --no-deps --ignore-installed .
+  noarch: python
+  script: {{ PYTHON }} -m pip install . --no-deps -vvv
+  run_exports:
+    - {{ pin_subpackage('cami-opal', max_pin="x") }}
 
 requirements:
   host:
     - python >=3.6
     - pip
-
   run:
-    - python ==3.7
-    - numpy >=1.16.4
-    - pandas >=0.24.2
-    - matplotlib-base >=3.1.1
+    - python >=3.6
+    - numpy >=1.24.2
+    - matplotlib-base >=3.7.1
+    - pandas >=1.5.3
+    - jinja2 <3.0.1
+    - bokeh ==3.1.0
+    - seaborn >=0.12.2
+    - docker-py >=6.1.2
+    - scipy >=1.10.1
     - dendropy >=4.4.0
     - h5py >=2.9.0
-    - bokeh ==0.13.0
-    - seaborn >=0.9.0
     - scikit-bio >=0.5.5
-    - docker-py >=4.0.2
-    - jinja2 <3.0.1
     - markupsafe <2.1
 
 test:
+  imports:
+    - cami_opal
   commands:
     - opal.py --help
 
 about:
-  home: https://github.com/CAMI-challenge/OPAL
+  home: http://cami-challenge.org
+  summary: 'OPAL assesses and compares the performance of taxonomic metagenome profilers.'
   license: Apache-2.0
   license_file: LICENSE
-  summary: 'OPAL assesses and compares the performance of taxonomic metagenome profilers.'
+  dev_url: https://github.com/CAMI-challenge/OPAL
diff --git a/recipes/camlhmp/meta.yaml b/recipes/camlhmp/meta.yaml
new file mode 100644
index 0000000000000..d7284e52d4dac
--- /dev/null
+++ b/recipes/camlhmp/meta.yaml
@@ -0,0 +1,50 @@
+{% set name = "camlhmp" %}
+{% set version = "0.1.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/camlhmp/camlhmp-{{ version }}.tar.gz
+  sha256: c2b19d85be14c5764f3ef4c977f958d11e6612d2c4b6c790c1c4e38f1c8b9f79
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install --no-deps --ignore-installed -vv .
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin='x.x.x') }}
+
+requirements:
+  host:
+    - python >=3.8
+    - poetry
+    - pip
+  run:
+    - biopython
+    - blast
+    - executor
+    - pigz
+    - python >=3.8
+    - pyyaml
+    - rich-click >=1.6.0
+
+test:
+  imports:
+    - camlhmp
+  commands:
+    - pip check
+    - camlhmp --help
+  requires:
+    - pip
+
+about:
+  home: https://github.com/rpetit3/camlhmp
+  summary: Classification through yAML Heuristic Mapping Protocol
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - rpetit3
diff --git a/recipes/campyagainst/meta.yaml b/recipes/campyagainst/meta.yaml
new file mode 100644
index 0000000000000..d239e6bbe61fa
--- /dev/null
+++ b/recipes/campyagainst/meta.yaml
@@ -0,0 +1,35 @@
+{% set version = "0.1.0" %}
+{% set name = "campyagainst" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/LanLab/{{ name }}/archive/v{{ version }}.tar.gz
+  sha256: aaa8434bc5cc06b7d8c567a8b1c7dc2ea926ffbfdebb0196a89559c4bdd92b74
+
+build:
+  noarch: python
+  number: 0
+  script: {{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv
+  run_exports:
+    - {{ pin_subpackage('campyagainst', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.8
+    - pip
+  run:
+    - python >=3.8
+    - fastani >=1.3
+
+about:
+  home: https://github.com/LanLab/campyagainst
+  license: GPL-3.0-or-later
+  license_file: LICENSE
+  summary: Accurate assignment of ANI genomic species to Campylobacter genomes.
+
+test:
+  commands:
+    - campyagainst --help
diff --git a/recipes/campygstyper/meta.yaml b/recipes/campygstyper/meta.yaml
new file mode 100644
index 0000000000000..0d869745829a8
--- /dev/null
+++ b/recipes/campygstyper/meta.yaml
@@ -0,0 +1,35 @@
+{% set version = "0.1.1" %}
+{% set name = "campygstyper" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/LanLab/{{ name }}/archive/v{{ version }}.tar.gz
+  sha256: 125787f7db92b8d787e47eeac710b66c6bc9e71a043dbc68de2427af09546e37
+
+build:
+  noarch: python
+  number: 0
+  script: {{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv
+  run_exports:
+    - {{ pin_subpackage('campygstyper', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.8
+    - pip
+  run:
+    - python >=3.8
+    - fastani >=1.3
+
+about:
+  home: https://github.com/LanLab/campygstyper
+  license: GPL-3.0-or-later
+  license_file: LICENSE
+  summary: Accurate assignment of ANI genomic species to Campylobacter genomes.
+
+test:
+  commands:
+    - campygstyper --help
diff --git a/recipes/cannoli/meta.yaml b/recipes/cannoli/meta.yaml
index 37e73896b7434..e4b3a7739a686 100644
--- a/recipes/cannoli/meta.yaml
+++ b/recipes/cannoli/meta.yaml
@@ -1,4 +1,4 @@
-{% set version="1.0" %}
+{% set version="1.0.1" %}
 
 package:
   name: cannoli
@@ -6,11 +6,13 @@ package:
 
 source:
   url: https://search.maven.org/remotecontent?filepath=org/bdgenomics/cannoli/cannoli-distribution-spark3_2.12/{{ version }}/cannoli-distribution-spark3_2.12-{{ version }}-bin.tar.gz
-  sha256: 28c076ebd64278c07e9169e5b5de13ea5fd30a1f68daffbe551518092089ef6a
+  sha256: 4cfbbe1d2085298e62d4143116f8776ef2c91854f36a0803c27164c51b541e12
 
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('cannoli', max_pin="1") }}
 
 requirements:
   run:
diff --git a/recipes/canopy/build.sh b/recipes/canopy/build.sh
new file mode 100644
index 0000000000000..0754372e7255c
--- /dev/null
+++ b/recipes/canopy/build.sh
@@ -0,0 +1,6 @@
+#!/bin/bash
+
+echo "Compiling Canopy"
+mkdir -p ${PREFIX}/bin
+make
+mv cc.bin ${PREFIX}/bin/
diff --git a/recipes/canopy/meta.yaml b/recipes/canopy/meta.yaml
new file mode 100644
index 0000000000000..8906c6773dc28
--- /dev/null
+++ b/recipes/canopy/meta.yaml
@@ -0,0 +1,36 @@
+{% set version="0.25" %}
+{% set name="canopy" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/hildebra/canopy2/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 6ea391021dc81ff1981bb69b0ec27a56a17bd23e01c25a27b86808366d62061f
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+    
+requirements:
+  build:
+    - {{ compiler('cxx') }}
+    - make
+    - llvm-openmp
+  host:
+    - zlib
+  run:
+    - zlib
+    - llvm-openmp
+
+test:
+  commands:
+    - cc.bin  --version | grep {{ version }}
+
+about:
+  home: https://github.com/hildebra/canopy2/
+  license: GPL-2.0-or-later
+  license_file: LICENSE
+  summary: 'Canopy - Metagenomics Canopy Clustering Implementation'
diff --git a/recipes/capcruncher/meta.yaml b/recipes/capcruncher/meta.yaml
index 6de8119ab0dce..f65c123600dbe 100644
--- a/recipes/capcruncher/meta.yaml
+++ b/recipes/capcruncher/meta.yaml
@@ -1,6 +1,5 @@
 {% set name = "capcruncher" %}
-{% set version = "0.2.3" %}
-
+{% set version = "0.3.12" %}
 
 package:
   name: {{ name|lower }}
@@ -8,66 +7,69 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/capcruncher-{{ version }}.tar.gz
-  sha256: 5168d168d45bae6421da2c4a5b226c2dae4c1703f66dd3ef1689d55ec4d6a9ed
+  sha256: 43b1e634dac4eee5f801b69b2adafb07b61c72556cc32b1cd5e03518ed2e407b
 
 build:
   number: 0
   noarch: python
+  script_env:
+    - SETUPTOOLS_SCM_PRETEND_VERSION={{ version }}
   entry_points:
     - capcruncher = capcruncher.cli:cli
-  script: {{ PYTHON }} -m pip install . -vv
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
+  script: {{ PYTHON }} -m pip install . --no-deps -vvv
 
 requirements:
   host:
     - pip
-    - python>=3.9
-    - setuptools
+    - python >=3.10
+    - setuptools-scm
+    - wheel
   run:
-    - bedtools
-    - bowtie2>=2.4.4
-    - cgatcore
-    - click
+    - python >=3.10
+    - click <=8.2.0
     - cooler
-    - cytoolz<0.11
-    - dask
-    - fastqc
-    - flash
-    - iced
-    - joblib
+    - duckdb
+    - h5py
+    - loguru
     - more-itertools
-    - multiqc
     - natsort
-    - pandas
-    - plotly
-    - pyarrow
+    - numpy
+    - pandas <=2.0.1
+    - plotly >5.0.0,<=5.10.0
+    - pyarrow >8.0.0,<=9.0.0
     - pybedtools
-    - pysam
-    - python-xxhash
-    - python>=3.9
-    - samtools
+    - pyranges
+    - pysam >0.15.0,<=0.19.1
+    - pyyaml >=6.0
+    - quarto
+    - ray
     - seaborn
+    - sh
+    - snakemake <=7.30.2
     - tqdm
     - trackhub
-    - trim-galore
-    - ucsc-bedgraphtobigwig
-    - ucsc-bedtobigbed
-    - ucsc-fetchchromsizes
+    - tracknado
     - ujson
+    - xopen
+    - python-xxhash
+
 test:
   imports:
     - capcruncher
     - capcruncher.cli
   commands:
-    - pip check
     - capcruncher --help
-  requires:
-    - pip
 
 about:
   home: https://github.com/sims-lab/CapCruncher.git
   summary: An end-to-end solution for processing Capture-C, Tri-C and Tiled-C data
-  license: GPL-3.0
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
+  doc_url: https://sims-lab.github.io/CapCruncher/
+  dev_url: https://github.com/sims-lab/CapCruncher
 
 extra:
   recipe-maintainers:
diff --git a/recipes/captus/build.sh b/recipes/captus/build.sh
new file mode 100644
index 0000000000000..374c3b8aca8dd
--- /dev/null
+++ b/recipes/captus/build.sh
@@ -0,0 +1,8 @@
+#!/bin/bash
+
+if [ `uname -s` == "Linux" ];
+then
+    ln -s "${PREFIX}/lib/libbz2.so.1.0" "${PREFIX}/lib/libbz2.so.1"
+fi
+
+$PYTHON -m pip install . --ignore-installed -vv
diff --git a/recipes/captus/meta.yaml b/recipes/captus/meta.yaml
index 28923b0000703..8a22b833b4489 100644
--- a/recipes/captus/meta.yaml
+++ b/recipes/captus/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.9.93" %}
-{% set sha256 = "bc6ad281ef2d27c3fe558f1319b5d9e8c73db180db44d3c857be03a9427552b5" %}
+{% set version = "1.0.1" %}
+{% set sha256 = "a9331d4a3d8d967e4b679c14e5af6fd98539659de3b740da876b1fa5c8dd0ba3" %}
 
 package:
   name: captus
@@ -10,9 +10,10 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 0
+  number: 2
   noarch: python
-  script: "{{ PYTHON }} -m pip install . --ignore-installed -vv"
+  run_exports:
+    - {{ pin_subpackage("captus", max_pin="x.x") }}
 
 requirements:
   build:
@@ -20,7 +21,6 @@ requirements:
     - python >=3.6
     - pip
     - setuptools
-
   run:
     - python >=3.6
     - pip
@@ -29,11 +29,13 @@ requirements:
     - falco >=0.3.0
     - fastqc
     - mafft
-    - megahit
+    - megahit # [linux]
+    - megahit =1.2.9=hfbae3c0_0 # [osx]
     - mmseqs2
     - muscle >=5
-    - pandas
-    - perl-bioperl-core =1.007002
+    - pandas >=2.1.0
+    - perl-bioperl-core
+    - perl-yaml
     - pigz
     - plotly
     - tqdm
diff --git a/recipes/carveme/LICENSE.txt b/recipes/carveme/LICENSE.txt
new file mode 100644
index 0000000000000..e9b0f54ede839
--- /dev/null
+++ b/recipes/carveme/LICENSE.txt
@@ -0,0 +1,16 @@
+
+Apache Software License 2.0
+
+Copyright (c) 2017, Daniel Machado
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
diff --git a/recipes/carveme/meta.yaml b/recipes/carveme/meta.yaml
new file mode 100644
index 0000000000000..3a9692325ff17
--- /dev/null
+++ b/recipes/carveme/meta.yaml
@@ -0,0 +1,65 @@
+{% set name = "carveme" %}
+{% set version = "1.6.1" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: 3f58e2519af378b15b7e0d175aefa94566793503e32856d690720213a1a9d478
+
+build:
+  number: 0
+  entry_points:
+    - build_universe=carveme.cli.build_universe:main
+    - curate_universe=carveme.cli.curate_universe:main
+    - carve=carveme.cli.carve:main
+    - gapfill=carveme.cli.gapfill:main
+    - merge_community=carveme.cli.merge_community:main
+    - benchmark=carveme.cli.benchmark:main
+  script: "{{ PYTHON }} -m pip install --use-pep517 . -vv"
+  noarch: python
+  build:
+  run_exports:
+    - {{ pin_subpackage('carveme', max_pin="x.x.x") }} 
+
+requirements:
+  host:
+    - python >=3.8
+    - pip
+  run:
+    - pandas 
+    - python >=3.8
+    - reframed >=1.5.1 
+    - diamond
+    - pyscipopt
+    - scip
+    - numpy
+    - requests 
+test:
+  imports:
+    - carveme
+    - carveme.cli
+    - carveme.reconstruction
+    - carveme.universe
+    - tests
+  commands:
+    - build_universe --help
+    - curate_universe --help
+    - carve --help
+    - gapfill --help
+    - merge_community --help
+    - benchmark --help
+
+about:
+  home: "https://github.com/cdanielmachado/carveme"
+  license: Apache-2.0
+  license_family: APACHE
+  license_file: LICENSE.txt
+  summary: "CarveMe: automated genome-scale metabolic model reconstruction"
+
+extra:
+  recipe-maintainers:
+    - lhtxa
+    - cdanielmachado
diff --git a/recipes/cascade-config/meta.yaml b/recipes/cascade-config/meta.yaml
new file mode 100644
index 0000000000000..b361491f3c62d
--- /dev/null
+++ b/recipes/cascade-config/meta.yaml
@@ -0,0 +1,45 @@
+{% set name = "cascade-config" %}
+{% set version = "0.4.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/cascade_config-{{ version }}.tar.gz
+  sha256: cb3cffd3e9899b6aa46f29e5462b413cfdd94e74e36748e977d1949c46478715
+
+build:
+  number: 0
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+  script: "{{ PYTHON }} -m pip install . --no-deps -vvv"
+
+requirements:
+  host:
+    - python >=3.6
+    - flit-core
+    - pip
+  run:
+    - python >=3.6
+    - jsonschema
+
+test:
+  imports:
+    - cascade_config
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/RalfG/cascade-config
+  summary: Cascading configuration from the CLI and config files.
+  license: Apache-2.0
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - compomics
+    - RalfG
diff --git a/recipes/cat/meta.yaml b/recipes/cat/meta.yaml
index f5fddea1afd14..81e3fc1cbdc4b 100644
--- a/recipes/cat/meta.yaml
+++ b/recipes/cat/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "5.2.3" %}
-{% set sha256 = "19a8eb28c0ebd3fc5a04b006d305a916dd1af00a32b70d2f30df35f32ca2929b" %}
+{% set version = "5.3" %}
+{% set sha256 = "2893ee18b0d5b24a291edd7d8ca1738d40ea189d18ba0fb7aad3e38973a787e7" %}
 
 package:
   name: cat
@@ -10,9 +10,10 @@ source:
   sha256: {{ sha256 }} 
 
 build:
-  number: 1
+  number: 0
   noarch: generic
-
+  run_exports:
+    - {{ pin_subpackage("cat", max_pin="x") }}
 requirements:
   run:
     - python 3
diff --git a/recipes/catch/meta.yaml b/recipes/catch/meta.yaml
index ad6f7f7ad1756..2b2f3d2315b08 100644
--- a/recipes/catch/meta.yaml
+++ b/recipes/catch/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "1.5.1" %}
-{% set sha256 = "9b3f266e5ac77749f35a98bf37aed859836c9e7b1955e1af31df1f9c66266df0" %}
+{% set version = "1.5.2" %}
+{% set sha256 = "7b2312d55f8a13f5c459a3b3f0f192affff7cb796ab296dd3a5e18992f40cd5e" %}
 
 package:
   name: catch
@@ -12,7 +12,9 @@ source:
 build:
   noarch: python
   number: 0
-  script: '{{ PYTHON }} -m pip install --no-deps --ignore-installed --no-cache-dir -vvv .'
+  script: '{{ PYTHON }} -m pip install --no-deps --no-build-isolation --no-cache-dir -vvv .'
+  run_exports:
+    - {{ pin_subpackage('catch', max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/cazy_webscraper/meta.yaml b/recipes/cazy_webscraper/meta.yaml
index f5c23370c9ad7..e46ee87c652f9 100644
--- a/recipes/cazy_webscraper/meta.yaml
+++ b/recipes/cazy_webscraper/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "cazy_webscraper" %}
-{% set version = "2.3.0" %}
-{% set sha256 = "08a12134f124622069d4259c55d0bafc618e4f1d4872992529cd495d782fd21e" %}
+{% set version = "2.3.0.3" %}
+{% set sha256 = "82af3a5c13c1f3254bcbc9967c85d38f085c88f18834fb5a84155d5f13e669d9" %}
 
 package:
   name: {{ name|lower }}
@@ -13,7 +13,7 @@ source:
 build:
   number: 0
   noarch: python
-  script: {{ PYTHON }} -m pip install . -vv
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
   entry_points:
     - cazy_webscraper = cazy_webscraper.cazy_scraper:main
     - cw_get_genbank_seqs = cazy_webscraper.expand.genbank.sequences.get_genbank_sequences:main
@@ -25,6 +25,8 @@ build:
     - cw_get_pdb_structures = cazy_webscraper.expand.pdb.get_pdb_structures:main
     - cw_query_database = cazy_webscraper.api.cw_query_database:main
     - cw_get_db_schema = cazy_webscraper.sql.get_schema:main
+  run_exports:
+    - {{ pin_subpackage('cazy_webscraper', max_pin="x") }}
 
 requirements:
   host:
@@ -57,6 +59,7 @@ about:
   dev_url: "https://github.com/HobnobMancer/cazy_webscraper"
   summary: "A tool to automate retrieving data from CAZy, build a local CAZyme SQL database, and throughly interrogating the data. Also, automate retrieving protein data, sequences, EC numbers and structure files for specific datasets in the CAZyme database from UniProt, GenBank and PDB."
   license: MIT
+  license_family: MIT
   license_file: LICENSE
 
 extra:
diff --git a/recipes/ccmetagen/meta.yaml b/recipes/ccmetagen/meta.yaml
index 5661e6a3706f7..2041475df1daa 100644
--- a/recipes/ccmetagen/meta.yaml
+++ b/recipes/ccmetagen/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "ccmetagen" %}
-{% set version = "1.4.1" %}
+{% set version = "1.5.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,19 +7,21 @@ package:
 
 source:
   url: "https://github.com/vrmarcelino/CCMetagen/archive/v{{ version }}.tar.gz"
-  sha256: "38f6535296a8c9ce173cbc859368f8ddcec2d7612bc52bd8ea38d21f67e4d67f"
+  sha256: "44a0591e6a5d0a5317cf2307c8da6851dde039679b32bd0cc743b210b4add81d"
 
 build:
   noarch: python
   number: 0
   script: "python -m pip install --no-deps --ignore-installed . "
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   host:
     - pip
     - python
   run:
-    - python
+    - python >=3.9,<3.12
     - ete3
     - pandas
     - kma >=1.3
@@ -36,3 +38,8 @@ about:
   license_family: "GPL3"
   license_file: "LICENSE"
   summary: "CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data."
+
+extra:
+  recipe-maintainers:
+    - vrmarcelino
+    - vinisalazar
diff --git a/recipes/ccsmeth/meta.yaml b/recipes/ccsmeth/meta.yaml
index 2d8d97c2f3349..b31d55381a2a0 100644
--- a/recipes/ccsmeth/meta.yaml
+++ b/recipes/ccsmeth/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "ccsmeth" %}
-{% set version = "0.4.1" %}
-{% set hash = "783382fc3f3a108d7b1f4de8f60c06a45c049d8de797251d14cadb1ae69b6aa7" %}
+{% set version = "0.5.0" %}
+{% set hash = "9f6bd61ebf1e7e7a4b6d0690658ccf0a70936faf3229db7998ef3ad6ef3e3a54" %}
 
 package:
   name: "{{ name|lower }}"
@@ -16,6 +16,8 @@ build:
   entry_points:
     - ccsmeth=ccsmeth.ccsmeth:main
   script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage("ccsmeth", max_pin="x.x") }}
 
 requirements:
   host:
@@ -28,7 +30,7 @@ requirements:
     - numpy >=1.20.0
     - scikit-learn >=1.0.2
     - statsmodels >=0.13.2
-    - pytorch >=1.2.0,<=1.12.1
+    - pytorch >=1.2.0,<=2.1.0
     - pysam >=0.19.0
     - tqdm >=4.64.0
     - bedtools =2.30.0
diff --git a/recipes/cd-hit/meta.yaml b/recipes/cd-hit/meta.yaml
index 87534475d3ab5..8163e48de1d69 100644
--- a/recipes/cd-hit/meta.yaml
+++ b/recipes/cd-hit/meta.yaml
@@ -10,7 +10,9 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 9
+  number: 10
+  run_exports:
+    - {{ pin_subpackage('cd-hit', max_pin="x") }}
 
 requirements:
   build:
@@ -32,3 +34,7 @@ about:
   home: https://github.com/weizhongli/cdhit
   license: GPLv2
   summary: Clusters and compares protein or nucleotide sequences
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/cdbtools/build.sh b/recipes/cdbtools/build.sh
index 3298b9ab314d0..facdc9734cb9e 100644
--- a/recipes/cdbtools/build.sh
+++ b/recipes/cdbtools/build.sh
@@ -1,4 +1,4 @@
 mkdir -pv $PREFIX/bin
-make CC="${CXX}" LINKER="${CXX}"
+make CC="${CXX}" LINKER="${CXX}" -j ${CPU_COUNT}
 cp cdbfasta $PREFIX/bin
 cp cdbyank $PREFIX/bin
diff --git a/recipes/cdbtools/meta.yaml b/recipes/cdbtools/meta.yaml
index a95d6334963bb..fd3037deed543 100644
--- a/recipes/cdbtools/meta.yaml
+++ b/recipes/cdbtools/meta.yaml
@@ -10,7 +10,9 @@ source:
     - zlib.patch
 
 build:
-  number: 9
+  number: 10
+  run_exports:
+    - {{ pin_subpackage('cdbtools', max_pin='x.x') }}
 
 requirements:
   build:
@@ -31,4 +33,8 @@ about:
   license: Public Domain
   summary: CDB (Constant DataBase) indexing and retrieval tools for FASTA files
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+
 # vim:set ts=8 sw=2
diff --git a/recipes/cellbender/meta.yaml b/recipes/cellbender/meta.yaml
new file mode 100644
index 0000000000000..68183da020015
--- /dev/null
+++ b/recipes/cellbender/meta.yaml
@@ -0,0 +1,64 @@
+{% set name = "cellbender" %}
+{% set version = "0.3.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/cellbender-{{ version }}.tar.gz
+  sha256: 94a46fb2b5921414ea86213cfdebca267b9ba6ba02df854cbd353980ab3aff42
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - cellbender = cellbender.base_cli:main
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  run_exports:
+    - {{ pin_subpackage('cellbender', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python 3.7
+    - setuptools >=61.2
+    - pip
+  run:
+    - python 3.7
+    - numpy
+    - scipy
+    - pytables
+    - pandas
+    - pyro-ppl >=1.8.4
+    - pytorch
+    - matplotlib-base
+    - anndata >=0.7
+    - loompy
+    - ipython
+    - jupyter
+    - jupyter_contrib_nbextensions
+    - notebook <7.0.0
+    - nbconvert <7.0.0
+    - psutil
+
+test:
+  imports:
+    - cellbender
+  commands:
+    - cellbender --help
+
+about:
+  home: https://github.com/broadinstitute/CellBender
+  summary: "A software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data"
+  license: BSD-3-Clause
+  license_family: BSD
+  license_file: LICENSE
+  doc_url: https://cellbender.readthedocs.io/en/latest/
+  dev_url: https://github.com/broadinstitute/CellBender
+
+extra:
+  recipe-maintainers:
+    - mencian
+  identifiers:
+    - biotools:CellBender
+    - doi:10.1038/s41592-023-01943-7
diff --git a/recipes/cellprofiler-core/meta.yaml b/recipes/cellprofiler-core/meta.yaml
index 09c3990c149f3..eb03ea8eddc69 100644
--- a/recipes/cellprofiler-core/meta.yaml
+++ b/recipes/cellprofiler-core/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "cellprofiler-core" %}
-{% set version = "4.2.4" %}
+{% set version = "4.2.6" %}
 
 package:
   name: {{ name|lower }}
@@ -7,12 +7,14 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/cellprofiler-core-{{ version }}.tar.gz
-  sha256: 8990ddab4beab5d65adf0e55ea2c44579921de494f79d863778a4e709af6900c
+  sha256: 91993485783bbab87d89a728260f10e57fda3f7335e6057393702cea774db2d7
 
 build:
   number: 0
   noarch: python
   script: {{ PYTHON }} -m pip install . -vv
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   host:
@@ -22,7 +24,7 @@ requirements:
     - boto3 >=1.12.28
     - centrosome ==1.2.1
     - docutils ==0.15.2
-    - h5py ~=3.6.0
+    - h5py 3.6.0
     - matplotlib-base >=3.1.3
     - numpy >=1.18.2
     - prokaryote ==2.4.4
@@ -30,7 +32,7 @@ requirements:
     - python >=3.6
     - python-bioformats ==4.0.6
     - python-javabridge ==4.0.3
-    - pyzmq ~=22.3
+    - pyzmq 22.3
     - scikit-image >=0.16.2
     - scipy >=1.4.1
 
diff --git a/recipes/cellprofiler/meta.yaml b/recipes/cellprofiler/meta.yaml
index ddfe4d3a6aa22..ee514fd59176f 100644
--- a/recipes/cellprofiler/meta.yaml
+++ b/recipes/cellprofiler/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "CellProfiler" %}
-{% set version = "4.2.1" %}
+{% set version = "4.2.6" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,25 +7,26 @@ package:
 
 source:
   url: https://github.com/CellProfiler/{{ name  }}/archive/v{{ version }}.tar.gz
-  sha256: "4b315864ac492a8042a626b130c89d86d1fe891902f4316f1f7a91a468e29d2a"
+  sha256: "fae14f97efc69f09d9074e53fcebbf50e1eafbf4ebaeb3a3de8699f44c9bccd9"
 
 build:
-  number: 3
+  number: 0
+  skip:  True  # [ py < 39 ]
   script: "{{ PYTHON }} -m pip install --no-deps --ignore-installed . -vv"
-  #skip: True  # this is using for some reason up to 3GB of memory and crashes CCI, build and push locally
-  #skip: True  # [win or osx or py3k]
+  run_exports:
+    - {{ pin_subpackage('cellprofiler', max_pin='x') }}
 
 requirements:
   build:
     - {{ compiler('c') }}
   host:
-    - python  3.8  ## pymzq 18 not available for any later python version
+    - python
     - pip
     - cython
     - python-javabridge
     - pytest
   run:
-    - python  3.8
+    - python
     - centrosome
     - docutils
     - cellprofiler-core {{ version }}
@@ -38,7 +39,7 @@ requirements:
     - sentry-sdk
     - matplotlib-base
     - mysqlclient
-    - numpy  >=1.18.2,<=1.20.0
+    - numpy
     - prokaryote
     - python-bioformats
     - requests
diff --git a/recipes/cellqc/meta.yaml b/recipes/cellqc/meta.yaml
index 3bbc85f71b525..0582defd01a18 100644
--- a/recipes/cellqc/meta.yaml
+++ b/recipes/cellqc/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "cellqc" %}
-{% set version = "0.0.4" %}
+{% set version = "0.0.7" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 35fda6a1901e07d86303303f9364db81c664a8e069932ac551db54668e47cc72
+  sha256: d637e51cf5bbe5dae7b3fd8dc85f32af1e8b9c379882351878673bdd3ff6bf6d
 
 build:
-  number: 1
+  number: 0
   entry_points:
     - cellqc=cellqc.cellqc:main
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
   script: "{{ PYTHON }} -m pip install . -vv"
   noarch: python
 
diff --git a/recipes/cellsnake/meta.yaml b/recipes/cellsnake/meta.yaml
index 8596a506d2368..012b4037e3037 100644
--- a/recipes/cellsnake/meta.yaml
+++ b/recipes/cellsnake/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "cellsnake" %}
-{% set version = "0.2.0.1" %}
+{% set version = "0.2.0.12" %}
 
 
 package:
@@ -8,20 +8,22 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/cellsnake-{{ version }}.tar.gz
-  sha256: b3d07350227ac78d49632e015bf61566f84c54c825c6e56478f34957435514a4
+  sha256: d8b812c5063a34cf07da900881517b1946c66f2ad2a89092168edaff5693cb7d
 
 build:
   noarch: python
   number: 0
   entry_points:
     - cellsnake=cellsnake.command_line:main
-  script: python -m pip install . -vv
-
+  script: python -m pip install . --ignore-installed -vv
+  run_exports:
+    - {{  pin_compatible(name, max_pin="x.x") }}
 
 requirements:
   host:
     - pip
     - python
+    - r-base ==4.3
 
   run:
     - python
@@ -34,16 +36,19 @@ requirements:
     - pysam >=0.16.0.1
     - regex >=2021.4.4
     - scipy 
-    - snakemake >=7.22.0
+    - snakemake-minimal ==7.22.0
     - umap-learn
     - plotly
-    - python-kaleido
-    - r-base ==4.2.2
+    - r-ggraph ==2.1.0
     - r-seurat ==4.3.0
-    - r-igraph ==1.3.4
+    - r-seuratobject ==4.1.3
+    - r-matrix <=1.5_4.1
+    - r-igraph
     - r-ggraph ==2.1.0
     - r-clustree ==0.5.0
+    - r-dbplyr <=2.3.2 
     - r-ggthemes
+    - r-gplots
     - r-viridis
     - r-librarian
     - r-patchwork
@@ -65,22 +70,9 @@ requirements:
     - r-r.utils
     - r-spdep
     - r-hdf5r
-    - r-monocle3
     - r-rsvd
     - r-cowplot
     - r-randomcolor
-    - bioconductor-rhdf5lib
-    - bioconductor-clusterprofiler ==4.6.0
-    - bioconductor-scater ==1.26.0
-    - bioconductor-limma
-    - bioconductor-complexheatmap
-    - bioconductor-topgo
-    - bioconductor-org.hs.eg.db
-    - bioconductor-miqc 
-    - bioconductor-rhdf5lib
-    - bioconductor-singler
-    - bioconductor-celldex
-    - bioconductor-enhancedvolcano
     - geos ==3.11.1
     - cmake
     - hdf5
@@ -88,11 +80,12 @@ requirements:
     - r-xml
     - bedtools
     - samtools
-    - pandoc
     - kraken2
-    - scanpy >=1.9.1
+    - scanpy ==1.9.1
     - openblas ==0.3.21
+    - fastp
 
+  
 test:
   imports:
     - cellsnake
diff --git a/recipes/celltypist/meta.yaml b/recipes/celltypist/meta.yaml
index 87e4195cd3e46..71d9216a1a3c3 100644
--- a/recipes/celltypist/meta.yaml
+++ b/recipes/celltypist/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "celltypist" %}
-{% set version = "1.5.3" %}
+{% set version = "1.6.2" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,14 +7,16 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: a25ad8810d34241b41cb5ec8d6021ad0afff8b909668837ac5b71c0c191d9944
+  sha256: a22309230c578c3738f72643492387167053f35a610625c75d66b056cf520361
 
 build:
-  number: 1
+  number: 0
   noarch: python
   entry_points:
     - celltypist=celltypist.command_line:main
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('celltypist', max_pin="x") }}
 
 requirements:
   host:
@@ -51,3 +53,5 @@ extra:
   recipe-maintainers:
     - cx1
     - mp33
+  identifiers:
+    - doi:10.1126/science.abl5197
diff --git a/recipes/cellxgene/meta.yaml b/recipes/cellxgene/meta.yaml
index e9707286a7efb..c0c0b3cf36172 100644
--- a/recipes/cellxgene/meta.yaml
+++ b/recipes/cellxgene/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "cellxgene" %}
-{% set version = "1.1.2" %}
-{% set sha256 = "9cdf6e626b2d884d4efa4e8cf2dd42deb4a3f9d793134d53c1c70938e8dc0a9a" %}
+{% set version = "1.2.0" %}
+{% set sha256 = "1a4c5e93106283ecd1d6bd38170942d298ce8087ace533c2a6e294b67fb13c53" %}
 
 package:
   name: "{{ name|lower }}"
@@ -15,7 +15,9 @@ build:
   noarch: python
   entry_points:
     - cellxgene = server.cli.cli:cli
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('cellxgene', max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/cenote-taker3/meta.yaml b/recipes/cenote-taker3/meta.yaml
new file mode 100644
index 0000000000000..63206767586a6
--- /dev/null
+++ b/recipes/cenote-taker3/meta.yaml
@@ -0,0 +1,64 @@
+{% set name = "cenote-taker3" %}
+{% set version = "3.3.1" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://github.com/mtisza1/{{ name }}/archive/v{{ version }}.tar.gz"
+  sha256: ce595208f3d925f7798e579b2d72b995b192eac802e24bb3d9d0a2ca856b5a99
+
+build:
+  number: 0
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage("cenote-taker3", max_pin="x") }}
+  entry_points:
+    - cenotetaker3 = cenote.cenotetaker3:cenotetaker3
+    - get_ct3_dbs = cenote.get_ct3_databases:get_ct3_dbs
+  script:
+    - {{ PYTHON }} -m pip install . --no-deps -vv
+
+requirements:
+  host:
+    - pip
+    - python >=3.10
+  run:
+    - python >=3.10
+    - seqkit
+    - prodigal
+    - pyrodigal-gv >=0.3.1
+    - hhsuite
+    - mmseqs2
+    - trnascan-se
+    - minimap2
+    - tbl2asn-forever
+    - biopython
+    - bedtools
+    - phanotate
+    - pyhmmer
+    - findutils
+    - coreutils
+    - sed
+    - grep
+    - samtools
+    - pandas
+    - pyarrow
+
+
+test:
+  commands:
+    - cenotetaker3 --version
+    - get_ct3_dbs -h
+
+about:
+  home: "https://github.com/mtisza1/Cenote-Taker3"
+  license: MIT
+  license_file: LICENSE
+  summary: "Cenote-Taker 3: Discover and annotate the virome"
+  dev_url: "https://github.com/mtisza1/Cenote-Taker3"
+
+extra:
+  recipe-maintainers:
+    - mtisza1
\ No newline at end of file
diff --git a/recipes/centrifuge-core/meta.yaml b/recipes/centrifuge-core/meta.yaml
index dfb689b988214..5381ccdd5d741 100644
--- a/recipes/centrifuge-core/meta.yaml
+++ b/recipes/centrifuge-core/meta.yaml
@@ -1,16 +1,19 @@
 {% set name = "centrifuge-core" %}
-{% set version = "1.0.4" %}
+{% set version = "1.0.4.1" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 build:
-  number: 2
+  number: 0
+  skip: true # [osx]
+  run_exports:
+    - {{ pin_subpackage("centrifuge-core", max_pin="x.x") }}
 
 source:
   url: https://github.com/DaehwanKimLab/centrifuge/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 929daed0f84739f7636cc1ea2757527e83373f107107ffeb5937a403ba5201bc
+  sha256: 638cc6701688bfdf81173d65fa95332139e11b215b2d25c030f8ae873c34e5cc
 
 requirements:
   build:
diff --git a/recipes/centrifuge/meta.yaml b/recipes/centrifuge/meta.yaml
index 2156e793478fb..e3d21ca909841 100644
--- a/recipes/centrifuge/meta.yaml
+++ b/recipes/centrifuge/meta.yaml
@@ -1,16 +1,19 @@
 {% set name = "centrifuge" %}
-{% set version = "1.0.4" %}
+{% set version = "1.0.4.1" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 build:
-  number: 0
+  number: 1
+  skip: true # [osx]
+  run_exports:
+    - {{ pin_subpackage("centrifuge", max_pin="x.x") }}
 
 source:
   url: https://github.com/DaehwanKimLab/centrifuge/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 929daed0f84739f7636cc1ea2757527e83373f107107ffeb5937a403ba5201bc
+  sha256: 638cc6701688bfdf81173d65fa95332139e11b215b2d25c030f8ae873c34e5cc
 
 requirements:
   build:
@@ -32,7 +35,8 @@ test:
 about:
   home: https://github.com/DaehwanKimLab/centrifuge
   license: GPL3
-  summary: 'Classifier for metagenomic sequences.'
+  license_file: LICENSE
+  summary: 'Classifier for metagenomic sequences. Supports classifier scripts'
 
 extra:
   identifiers:
diff --git a/recipes/centrifuge/patch b/recipes/centrifuge/patch
new file mode 100644
index 0000000000000..5a968e69311d7
--- /dev/null
+++ b/recipes/centrifuge/patch
@@ -0,0 +1,13 @@
+diff --git a/processor_support.h b/processor_support.h
+index f68ee65..135a768 100644
+--- a/processor_support.h
++++ b/processor_support.h
+@@ -49,7 +49,7 @@ public:
+ #elif defined(USING_GCC_COMPILER)
+         __get_cpuid(0x1, &regs.EAX, &regs.EBX, &regs.ECX, &regs.EDX);
+ #else
+-        std::cerr << “ERROR: please define __cpuid() for this build.\n”; 
++        std::cerr << "ERROR: please define __cpuid() for this build.\n"; 
+         assert(0);
+ #endif
+         if( !( (regs.ECX & BIT(20)) && (regs.ECX & BIT(23)) ) ) return false;
\ No newline at end of file
diff --git a/recipes/centrifuger/build.sh b/recipes/centrifuger/build.sh
new file mode 100644
index 0000000000000..5198e76cc7426
--- /dev/null
+++ b/recipes/centrifuger/build.sh
@@ -0,0 +1,12 @@
+#!/bin/bash
+export LDFLAGS="-L$PREFIX/lib"
+export CPATH=${PREFIX}/include
+
+mkdir -p $PREFIX/bin
+
+make CXX=$CXX RELEASE_FLAGS="$CXXFLAGS"
+chmod +x centrifuger-download
+chmod +x centrifuger-kreport
+chmod +x centrifuger-inspect
+
+cp {centrifuger,centrifuger-build,centrifuger-download,centrifuger-kreport,centrifuger-inspect} $PREFIX/bin
diff --git a/recipes/centrifuger/meta.yaml b/recipes/centrifuger/meta.yaml
new file mode 100644
index 0000000000000..722829e13b066
--- /dev/null
+++ b/recipes/centrifuger/meta.yaml
@@ -0,0 +1,44 @@
+{% set name = "centrifuger" %}
+{% set version = "1.0.3" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+source:
+  url: https://github.com/mourisl/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 04c08bb17aa9ab00bc1d5c0f8547cf6a6335003e315766ff1f07d5dedbbe2904
+
+requirements:
+  build:
+    - zlib
+    - make
+    - {{ compiler('cxx') }}
+  host:
+    - zlib
+  run:
+    - zlib
+    - perl
+    - wget
+    - tar
+    - python
+
+test:
+  commands:
+    - centrifuger -v | grep 'Centrifuger v'
+    - centrifuger-inspect 2>&1 | grep 'Required'
+
+
+about:
+  home: https://github.com/mourisl/centrifuger
+  license: MIT
+  summary: 'Lossless compression of microbial genomes for efficient and accurate metagenomic sequence classification.'
+
+extra:
+  identifiers:
+    - doi:10.1101/2023.11.15.567129
diff --git a/recipes/centrosome/meta.yaml b/recipes/centrosome/meta.yaml
index f09cddf8cedd3..903b2211dab07 100644
--- a/recipes/centrosome/meta.yaml
+++ b/recipes/centrosome/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "centrosome" %}
-{% set version = "1.2.1" %}
+{% set version = "1.2.2" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: https://github.com/CellProfiler/centrosome/archive/v{{version}}.zip
-  sha256: 2bfd4c269eba2414e6f93afc97b59d48e382ea10679a321277ccda5ed92d12a0
+  sha256: bb69cd2d0f9df7976710be72c2269368588da36724537657f7d88b6d827456bf
 
 build:
-  number: 2
+  number: 0
   skip: True  # [py<30]
-  script: "python -m pip install --no-deps --ignore-installed ."
+  script: CFLAGS="$CFLAGS -Wno-error=int-conversion" python -m pip install --no-deps --ignore-installed . -vv
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
 
 requirements:
   build:
diff --git a/recipes/cgat-apps/meta.yaml b/recipes/cgat-apps/meta.yaml
index a31ea03d5e61f..fa2fc24eb1ff5 100644
--- a/recipes/cgat-apps/meta.yaml
+++ b/recipes/cgat-apps/meta.yaml
@@ -1,17 +1,19 @@
-{% set version = "0.6.5" %}
+{% set name = "cgat-apps" %}
+{% set version = "0.7.2" %}
 
 package:
-  name: cgat-apps
+  name: {{ name|lower }}
   version: {{ version }}
 
 source:
   url: https://pypi.io/packages/source/c/cgat/cgat-{{ version }}.tar.gz
-  sha256: c2350e2e1e6897839537b0ed17b4a03140141d0f0c15cb804e6e7aa12e2d2b70
+  sha256: 746701d1a6677e8200092894c35c942383123fd8e22ab172f3ef6b2222b8eaef
 
   
 build:
-  skip: True # [py2k or py == 39 or py == 36]
-  number: 3
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('cgat-apps', max_pin="x.x") }}
   entry_points:
     - cgat = cgat.cgat:main
 
@@ -23,34 +25,29 @@ requirements:
     - python
     - cython
     - numpy
-    - pysam>=0.17.0
+    - pysam
     - htslib
     - setuptools
-    - ucsc-wigtobigwig
   run:
     - python
-    - cgatcore>=0.6.5
+    - cgatcore
     - alignlib-lite
     - biopython
-    - future
     - matplotlib-base
     - numpy
     - pandas
     - pybedtools
     - pybigwig
-    - pysam>=0.17.0
+    - pysam
     - htslib
     - pyyaml
     - quicksect
     - scipy
-    - six
-    - jinja2
     - scikit-learn
     - sortedcontainers
     # Misc dependencies
     - bedtools
     - ucsc-bedgraphtobigwig
-    - ucsc-bedtobigbed
     - ucsc-wigtobigwig
     - coreutils
     - grep
diff --git a/recipes/cgatcore/meta.yaml b/recipes/cgatcore/meta.yaml
index c654b1ae42507..2dfaeabb0c6ac 100644
--- a/recipes/cgatcore/meta.yaml
+++ b/recipes/cgatcore/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "cgatcore" %}
-{% set version = "0.6.15" %}
+{% set version = "0.6.16" %}
 
 package:
   name: {{ name|lower }}
@@ -7,11 +7,13 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: a8a4e5867ae327307cbd49118d52add5ec7429d9ac1ac70f5189eff997f40360
+  sha256: ae32907ff806829fa2389c6e27e658097c0a8dab1e4bed4123d9f85f4ba04be0
 
 build:
   number: 0
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('cgatcore', max_pin="x.x") }}
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
 
 requirements:
diff --git a/recipes/cgelib/meta.yaml b/recipes/cgelib/meta.yaml
new file mode 100644
index 0000000000000..e36cc291d1629
--- /dev/null
+++ b/recipes/cgelib/meta.yaml
@@ -0,0 +1,39 @@
+{% set name = "cgelib" %}
+{% set version = "0.7.5" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/cgelib-{{ version }}.tar.gz
+  sha256: f125106027dd4998dca8b73e2a558fc2fa2bbc968632162203fb3d93beb04452
+
+build:
+  number: 0
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  run_exports:
+    - {{ pin_subpackage('cgelib', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.6
+    - pip
+    - wheel
+  run:
+    - python >=3.6
+    - python-dateutil
+    - gitpython
+
+test:
+  imports:
+    - cgelib
+
+about:
+  home: https://genomicepidemiology.org/
+  summary: "This package will in time replace the cgecore package. The package contains classes and functions intended to be utilized across the CGE tools."
+  license: Apache-2.0
+  license_family: APACHE
+  license_file: LICENSE.txt
+  dev_url: https://bitbucket.org/genomicepidemiology/cgelib
diff --git a/recipes/cgranges/meta.yaml b/recipes/cgranges/meta.yaml
index 238aa0a1d9c9f..6ee6024d92d26 100644
--- a/recipes/cgranges/meta.yaml
+++ b/recipes/cgranges/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "cgranges" %}
-{% set version = "0.1" %}
-{% set sha256 = "40bd89f946ea96f5a8d6b207b0d54d8ee1aba6184b6d8ad8201c1ca3e7241379" %}
+{% set version = "0.1.1" %}
+{% set sha256 = "9445ec0cab97e736981db440cb306069d6fe33f638fbd142c106a0408ba10d6c" %}
 
 package:
   name: "{{ name|lower }}"
@@ -11,9 +11,11 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 2
-  skip: True # [py27]
-  script: {{ PYTHON }} -m pip install --no-deps --ignore-installed -vv .
+  number: 0
+  skip: True  # [py27]
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation -vvv .
+  run_exports:
+    - {{ pin_subpackage('cgranges', max_pin="x") }}
 
 requirements:
   build:
@@ -22,7 +24,6 @@ requirements:
     - python
     - pip
     - cython
-    - setuptools
   run:
     - python
 
diff --git a/recipes/cgt/meta.yaml b/recipes/cgt/meta.yaml
new file mode 100644
index 0000000000000..9afec628b546a
--- /dev/null
+++ b/recipes/cgt/meta.yaml
@@ -0,0 +1,31 @@
+{% set name = "cgt" %}
+{% set version = "1.0.0" %}
+
+package:
+  name: {{ name|lower}}
+  version: {{ version }}
+
+source:
+  url: https://github.com/bacpop/{{ name }}/archive/v{{ version }}.tar.gz
+  sha256: d79750878e45853e46a3e991e8f7274a2de248bca58476b2be7e527caac3ab2b
+
+build:
+  number: 0
+  script: "cargo install --no-track --locked --verbose --root \"${PREFIX}\" --path ."
+  run_exports:
+    - {{ pin_subpackage("cgt", max_pin="x") }}
+
+requirements:
+  build:
+    - {{ compiler('rust') }}
+
+test:
+  commands:
+    - cgt_bacpop -V
+
+about:
+   home: https://github.com/bacpop/cgt
+   license: Apache-2.0
+   license_family: APACHE
+   license_file: LICENSE.txt
+   summary: Calculate a core genome threshold (cgt) from metagenome data
diff --git a/recipes/checkatlas/meta.yaml b/recipes/checkatlas/meta.yaml
new file mode 100644
index 0000000000000..3baabf8a06abf
--- /dev/null
+++ b/recipes/checkatlas/meta.yaml
@@ -0,0 +1,61 @@
+{% set name = "checkatlas" %}
+{% set version = "0.4.17" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: 3b831f58142cfd3a51fbf0df6a88e588d04f3df40a2a33a69cab7e8d6785b179
+
+build:
+  number: 0
+  entry_points:
+    - checkatlas = checkatlas.__main__:main
+    - checkatlas-workflow = checkatlas.checkatlas_workflow:main
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage('checkatlas', max_pin="x.x") }}
+
+requirements:
+  host:
+    - pip
+    - poetry-core >=1.5.1,<2.0.0
+    - python >=3.10
+  run:
+    - python >=3.10
+    - llvmlite >=0.39.1,<0.40.0
+    - numba >=0.56.4,<0.57.0
+    - numpy >=1.23.5,<2.0.0
+    - rpy2 ==3.5.10
+    - scanpy >=1.9.1,<2.0.0
+    - scikit-learn >=1.2.1,<2.0.0
+    - types-pyyaml >=6.0.12.6,<7.0.0.0
+
+test:
+  imports:
+    - checkatlas
+    - checkatlas.metrics
+    - checkatlas.metrics.annot
+    - checkatlas.metrics.cluster
+    - checkatlas.metrics.dimred
+    - checkatlas.metrics.specificity
+    - checkatlas.utils
+  commands:
+    - checkatlas --help
+    - checkatlas-workflow --help
+
+about:
+  home: "https://checkatlas.readthedocs.io/"
+  license: BSD 3-Clause
+  license_family: BSD
+  license_file: LICENSE
+  summary: "One liner tool to check the quality of your single-cell atlases."
+  doc_url: "https://checkatlas.readthedocs.io/"
+  dev_url: "https://github.com/becavin-lab/checkatlas"
+
+extra:
+  recipe-maintainers:
+    - drbecavin
diff --git a/recipes/checkqc/meta.yaml b/recipes/checkqc/meta.yaml
index 437ec826db435..1def5f9605dfb 100644
--- a/recipes/checkqc/meta.yaml
+++ b/recipes/checkqc/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "checkQC" %}
-{% set version = "3.8.1" %}
+{% set version = "4.0.1" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 05581afe99b37d3c1ee5a383b92fd9381e7a20caa54fe43f7e9f6b5a325a9058
+  sha256: 03bc01d96d45c4c1a0e07d410a6f3ec74c0fab0f7125434ca3d983e70d4d568a
 
 build:
   number: 0
@@ -15,20 +15,22 @@ build:
   entry_points:
     - checkqc = checkQC.app:start
     - checkqc-ws = checkQC.web_app:start
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('checkqc', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - python >=3.6
+    - python >=3.6,<3.11
   run:
-    - click
-    - illumina-interop >=1.2.3
-    - python >=3.6
-    - pyyaml >=3.12
+    - python >=3.6,<3.11
+    - click >=8.1.1
+    - PyYAML >=6.0
+    - illumina-interop >=1.2.4
+    - xmltodict >=0.13.0
+    - tornado >=6.3.2
     - sample-sheet >=0.13.0
-    - tornado
-    - xmltodict
 
 test:
   imports:
@@ -41,10 +43,12 @@ test:
 
 about:
   home: "https://www.github.com/Molmed/checkQC"
-  license: GPLv3
+  license: GPL-3.0-or-later
   license_family: GPL3
   license_file: LICENSE
   summary: "A simple program to parse Illumina NGS data and check it for quality criteria."
+  doc_url: "https://checkqc.readthedocs.io/en/latest/"
+  dev_url: "https://www.github.com/Molmed/checkQC"
 
 extra:
   recipe-maintainers:
diff --git a/recipes/checkv/meta.yaml b/recipes/checkv/meta.yaml
index 50aa0beb676aa..544e4afbcee9f 100644
--- a/recipes/checkv/meta.yaml
+++ b/recipes/checkv/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "checkv" %}
-{% set version = "1.0.1" %}
+{% set version = "1.0.3" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,27 +7,31 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: c32b93e67ba92cd64e9214754d96c527152bda4cd06cc8214afe68130c33ea6e
+  sha256: 2438516f270191267a9860dfe31bf596d64a4fbc16be922b46fb6a4fd98d762a
 
 build:
   number: 0
   noarch: python
+  script: "{{ PYTHON }} -m pip install . -vv"
   entry_points:
     - checkv=checkv.cli:cli
-  script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage("checkv", max_pin="x") }}
 
 requirements:
   host:
     - python >=3.6
     - pip
+    - flit-core >=3.2,<4
   run:
     - python >=3.6
     - biopython
     - importlib-metadata >=0.12
     - numpy
     - psutil
+    - requests
     - kcounter
-    - diamond
+    - diamond <=2.1.8
     - hmmer
     - prodigal-gv
 
diff --git a/recipes/cherri/meta.yaml b/recipes/cherri/meta.yaml
index fee7f7b048cd0..f991f164d6d98 100644
--- a/recipes/cherri/meta.yaml
+++ b/recipes/cherri/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "Cherri" %}
-{% set version = "0.7" %}
-{% set sha256 = "f0110aad563b0737f220cdfa327038adbb33602df25e42efd83eada17c4283fe" %}
+{% set version = "0.8" %}
+{% set sha256 = "4f4a2d813dc803285042d5ae55ca12ffc9c16483796accfe60cd6f9c6cd70ca2" %}
 
 package:
   name: {{ name|lower }}
@@ -11,9 +11,11 @@ source:
   sha256: "{{ sha256 }}"
 
 build:
-  number: 1
+  number: 0
   noarch: python
-  script: $PYTHON -m pip install . --ignore-installed --no-deps -vv
+  script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vvv
+  run_exports:
+    - {{ pin_subpackage('cherri', max_pin="x") }}
 
 requirements:
   host:
@@ -21,17 +23,16 @@ requirements:
     - pip
   run:
     - python
-    - pip
-    - scikit-learn 
-    - networkx 
-    - interlap 
-    - numpy 
+    - scikit-learn
+    - networkx
+    - interlap
+    - numpy
     - pandas
-    - eden-kernel 
+    - eden-kernel
     - biofilm >=0.0.102
-    - intarna 
-    - python-wget 
-    - ubergauss 
+    - intarna
+    - python-wget
+    - ubergauss
     - bedtools
     - biopython
 test:
@@ -40,6 +41,7 @@ test:
 
 about:
   home: https://github.com/BackofenLab/Cherri
-  license: GPL-3.0 license
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
   summary: Accurate detection of functional RNA-RNA Interactions sites
diff --git a/recipes/chewbbaca/meta.yaml b/recipes/chewbbaca/meta.yaml
index 3472ae0917946..8d41f613a5ce0 100644
--- a/recipes/chewbbaca/meta.yaml
+++ b/recipes/chewbbaca/meta.yaml
@@ -1,13 +1,15 @@
-{% set name='chewBBACA' %}
-{% set version='3.2.0' %}
+{% set name = 'chewBBACA' %}
+{% set version = '3.3.5' %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: b6bc4dc5570b7bb710832f14299bcbd5fc0b356a37363e7fe35cfe60fb7e2937
+  url: https://github.com/B-UMMI/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  # url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: 6cf063286b55f55e33f75789eb5beaa59a1b7ca454f1a8bd89bb84a67aef1cde
+  # sha256: b54c5f4fb2f3c943f9ec51e5b81f4fb9a312fcc87fdea6e0a9f3edbebdf62308
 
 build:
   number: 0
@@ -15,7 +17,9 @@ build:
   entry_points:
     - chewBBACA.py = CHEWBBACA.chewBBACA:main
     - chewie = CHEWBBACA.chewBBACA:main
-  script: python -m pip install --no-deps --ignore-installed .
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation . -vvv
+  run_exports:
+    - {{ pin_subpackage('chewbbaca', max_pin="x") }}
 
 requirements:
   host:
@@ -23,40 +27,42 @@ requirements:
     - pip
   run:
     - python >=3.7
-    - numpy >=1.23.4
-    - scipy >=1.9.3
-    - biopython >=1.78
-    - pandas >=1.5.1
+    - numpy >=1.24.3
+    - scipy >=1.10.1
+    - biopython >=1.79
+    - pandas >=1.5.1,<2.1
     - plotly >=5.8.0
     - requests >=2.27.1
     - sparqlwrapper >=2.0.0
+    - pyrodigal >=3.0.0
     - blast >=2.9.0
-    - prodigal >=2.6.3
-    - clustalw >=2.1
     - mafft >=7.505
+    - fasttree >=2.1.11
 
 test:
-  requires:
-    - pip
   imports:
     - CHEWBBACA
-    - CHEWBBACA.CHEWBBACA_NS
-    - CHEWBBACA.PrepExternalSchema
-    - CHEWBBACA.SchemaEvaluator
-    - CHEWBBACA.AlleleCall
     - CHEWBBACA.CreateSchema
+    - CHEWBBACA.AlleleCall
+    - CHEWBBACA.SchemaEvaluator
+    - CHEWBBACA.AlleleCallEvaluator
+    - CHEWBBACA.ExtractCgMLST
+    - CHEWBBACA.PrepExternalSchema
+    - CHEWBBACA.UniprotFinder
+    - CHEWBBACA.CHEWBBACA_NS
     - CHEWBBACA.utils
   commands:
-    - pip check
     - chewBBACA.py --help
     - chewie --version
 
 about:
   home: https://github.com/B-UMMI/chewBBACA
-  license: GPL-3.0-only
+  license: GPL-3.0-or-later
   license_family: GPL3
+  license_file: LICENSE
   summary: 'A complete suite for gene-by-gene schema creation and strain identification.'
   description: 'chewBBACA is a comprehensive pipeline including a set of functions for the creation and validation of whole genome and core genome MultiLocus Sequence Typing (wg/cgMLST) schemas, providing an allele calling algorithm based on Blast Score Ratio that can be run in multiprocessor settings and a set of functions to visualize and validate allele variation in the loci.'
+  doc_url: https://chewbbaca.readthedocs.io/en/latest/index.html
 
 extra:
   identifiers:
diff --git a/recipes/chopper/meta.yaml b/recipes/chopper/meta.yaml
index 7d844b197a716..d3d1d006ac7f4 100644
--- a/recipes/chopper/meta.yaml
+++ b/recipes/chopper/meta.yaml
@@ -1,15 +1,17 @@
-{% set version = "0.5.0" %}
+{% set version = "0.8.0" %}
 
 package:
   name: chopper
   version: {{ version }}
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('chopper', max_pin="x.x") }}
 
 source:
   url: https://github.com/wdecoster/chopper/archive/v{{ version }}.tar.gz
-  sha256: 282f1609045dd2e2e3146fa638eb578a3eb32d67f74380dd793f69c18aa9394c
+  sha256: d79c3a3af8daf9e81f4a209061629e823a3cb0275ff13f9f7e800b9f62c19bab
 
 requirements:
   build:
diff --git a/recipes/chromap/meta.yaml b/recipes/chromap/meta.yaml
index 1805040802a97..05010a6f787c2 100644
--- a/recipes/chromap/meta.yaml
+++ b/recipes/chromap/meta.yaml
@@ -1,15 +1,17 @@
-{% set version = "0.2.5" %} 
+{% set version = "0.2.6" %}
 
 package:
   name: chromap
   version: {{ version }}
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('chromap', max_pin="x.x") }}
 
 source:
   url: https://github.com/haowenz/chromap/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 9cc77d7412304d41a0a419ba1da11e6794c1dab73cee2e2d71957376b1ddbc7a
+  sha256: bea2fc76bd7d8931f69db0b63aef19e50070b24c0ab1415569b59d490fff42e8
 
 requirements:
   build:
@@ -28,6 +30,8 @@ test:
 
 about:
   home: https://github.com/haowenz/chromap
-  license: GPL-3.0
+  license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary: Fast alignment and preprocessing of chromatin profiles
+  doc_url: https://zhanghaowen.com/chromap/
diff --git a/recipes/chromhmm/meta.yaml b/recipes/chromhmm/meta.yaml
index 76da70b8016ab..22303f5fee131 100644
--- a/recipes/chromhmm/meta.yaml
+++ b/recipes/chromhmm/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "ChromHMM" %}
-{% set version = "1.24" %}
+{% set version = "1.25" %}
 
 package:
   name: {{ name|lower }}
@@ -8,10 +8,12 @@ package:
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('chromhmm', max_pin=None) }}
 
 source:
   url: https://github.com/jernst98/{{ name }}/archive/v{{ version }}.tar.gz
-  sha256: 84e14ebb78c197abe946007e72965296980339d4e3155604bf6c6734319af30c
+  sha256: 96b5773f7400835f16cc1d86d4e42e6dcc038e74569311cd73da2d5c5002a5d2
 
 requirements:
   run:
@@ -27,6 +29,7 @@ about:
   home: https://github.com/jernst98/ChromHMM
   license: GPLv3
   summary: 'ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks.'
+  license_file: LICENSE
 
 extra:
   notes: 'ChromHMM comes with about 36MB of example data which is not included in the recipe. This recipe installs a script, "download_chromhmm_data.sh", which downloads the data in the proper location, and which can be run after ChromHMM has been installed.'
diff --git a/recipes/chromograph/meta.yaml b/recipes/chromograph/meta.yaml
index 17ef1fb5263cb..559bb6398e177 100644
--- a/recipes/chromograph/meta.yaml
+++ b/recipes/chromograph/meta.yaml
@@ -7,8 +7,10 @@ package:
 
 build:
   noarch: python
-  number: 1
+  number: 2
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage('chromograph', max_pin="x.x") }}
 
 source:
   url: https://github.com/Clinical-Genomics/chromograph/archive/refs/tags/v{{version}}.tar.gz
@@ -16,11 +18,11 @@ source:
 
 requirements:
   host:
-    - python >=3.7,<3.10
+    - python ==3.9
     - pip
   run:
-    - python >=3.7,<3.10
-    - matplotlib-base
+    - python ==3.9
+    - matplotlib-base ==3.5.3
     - numpy >=1.15
     - pyaml
     - pandas
diff --git a/recipes/chronumental/meta.yaml b/recipes/chronumental/meta.yaml
index 0e484de106a75..72c19011e38a4 100644
--- a/recipes/chronumental/meta.yaml
+++ b/recipes/chronumental/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "chronumental" %}
-{% set version = "0.0.50" %}
+{% set version = "0.0.63" %}
 
 package:
   name: {{ name|lower }}
@@ -7,11 +7,13 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/chronumental-{{ version }}.tar.gz
-  sha256: bd6733bd2227372404419771932e44c3833ec72bc3d918723c6c50688573ea67
+  sha256: f008bae186592447609cdd51ad940e0474b61a6c0ce9db1b44ed317d3b02f35f
 
 build:
   noarch: python
   script: {{ PYTHON }} -m pip install . -vv
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
   number: 0
 
 requirements:
@@ -19,7 +21,7 @@ requirements:
     - pip
     - python >=3.6
   run:
-    - numpyro ==0.9.0
+    - numpyro
     - pandas
     - python >=3.6
     - scipy
diff --git a/recipes/cialign/meta.yaml b/recipes/cialign/meta.yaml
index 8dd4c679a911a..a77d41ba8606b 100644
--- a/recipes/cialign/meta.yaml
+++ b/recipes/cialign/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "cialign" %}
-{% set version = "1.0.18" %}
+{% set version = "1.1.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: bb0b0645ac7d94b7101b712ce0913b8096c1ebee72a4d7fd1209cbdaabf4adb1
+  sha256: 8244cd7402ce7a9eea2bec2ca7954ef58b01408537c962611e60d7eb97a43966
 
 build:
-  number: 0
+  number: 2
   script: "{{ PYTHON }} -m pip install . -vv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   host:
@@ -20,14 +22,18 @@ requirements:
     - matplotlib-base
     - numpy
     - pillow
+    - pandas
+    - scipy
     - pip
-    - python>=3.6
+    - python >=3.6
   run:
     - configargparse
     - matplotlib-base
     - numpy
+    - scipy
     - pillow
-    - python>=3.6
+    - pandas
+    - python >=3.6
 
 test:
   imports:
diff --git a/recipes/circtools/meta.yaml b/recipes/circtools/meta.yaml
index 08e5d15ccee66..17d62103e9dfa 100644
--- a/recipes/circtools/meta.yaml
+++ b/recipes/circtools/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "circtools" %}
-{% set version = "1.3.0" %}
-{% set sha256 = "896af69efa3d1733f1d7a126940c87611a3e8d0ba9011e9d5c924641a21f30e5" %}
+{% set version = "1.3.1" %}
+{% set sha256 = "597544ac8f614b3c48000aee28e1de326f8d0582f57f35d808dbcbf24fdbf863" %}
 
 package:
   name: {{ name }}
diff --git a/recipes/circulocov/meta.yaml b/recipes/circulocov/meta.yaml
new file mode 100644
index 0000000000000..ac4cd3556ab77
--- /dev/null
+++ b/recipes/circulocov/meta.yaml
@@ -0,0 +1,51 @@
+{% set name = "circulocov" %}
+{% set version = "0.1.20240104" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: 6c585c90e63ff5ce4028157cb7f943f4abb679234daadb0349778bfb8141cd87
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - circulocov=circulocov.circulocov:main
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('circulocov', max_pin='x') }}
+
+requirements:
+  host:
+    - python >=3.8,<4.0
+    - pip
+  run:
+    - python >=3.8,<4.0
+    - matplotlib-base >=3.8.2
+    - biopython >=1.58
+    - numpy >=1.26.2
+    - pandas >=2.1.4
+    - pysam >=0.22.0
+    - pycirclize >=1.3.0
+    - minimap2 >=2.25
+
+test:
+  imports:
+    - circulocov
+  commands:
+    - circulocov --help
+
+about:
+  home: https://github.com/erinyoung/CirculoCov
+  license: GPL-3.0
+  license_family: GPL
+  license_file: LICENSE
+  summary: CirculoCov is a Python tool designed for circular-aware coverage analysis of draft genomes
+  doc_url: https://github.com/erinyoung/CirculoCov/blob/main/README.md
+
+extra:
+  recipe-maintainers:
+    - erinyoung
diff --git a/recipes/civicpy/meta.yaml b/recipes/civicpy/meta.yaml
index e757499136520..d4efb9149751d 100644
--- a/recipes/civicpy/meta.yaml
+++ b/recipes/civicpy/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "civicpy" %}
-{% set version = "3.0.0" %}
+{% set version = "3.1.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,29 +7,23 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 6aa80d2e37718b6a646a2adee5d2432f1a8fa87d6d13fd6e3de11a6834a0ba77
+  sha256: 1e9d5a36dff490c5a806cfc152c5f998ba13a54e409cb72eff392dc2ada14537
 
 build:
   number: 0
-  noarch: generic
+  noarch: python
   entry_points:
     - civicpy=civicpy.cli:cli
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('civicpy', max_pin="x") }}
 
 requirements:
-  host:
-    - backports-datetime-fromisoformat =2.0.0
-    - click
-    - deprecation
-    - networkx
-    - obonet =0.2.3
-    - pandas 
+  host: 
     - pip
-    - pysam
     - python >=3.5
-    - requests
-    - vcfpy
   run:
+    - python >=3.5
     - backports-datetime-fromisoformat =2.0.0
     - click
     - deprecation
@@ -37,7 +31,6 @@ requirements:
     - obonet =0.2.3
     - pandas
     - pysam
-    - python >=3.5
     - requests
     - vcfpy
 
diff --git a/recipes/clair3-illumina/build.sh b/recipes/clair3-illumina/build.sh
index 91ce406b0b6f3..63c71150a4330 100755
--- a/recipes/clair3-illumina/build.sh
+++ b/recipes/clair3-illumina/build.sh
@@ -5,7 +5,3 @@ cp -rv preprocess/realign $PREFIX/bin/preprocess
 cd $PREFIX/bin/preprocess/realign
 $CXX -std=c++14 -O1 -shared -fPIC -o realigner ssw_cpp.cpp ssw.c realigner.cpp
 $CXX -std=c++11 -shared -fPIC -o debruijn_graph -O3 debruijn_graph.cpp -I $PREFIX/include -L $PREFIX/lib
-
-
-
-
diff --git a/recipes/clair3-illumina/meta.yaml b/recipes/clair3-illumina/meta.yaml
index 711765d55c0c3..494bb178af863 100644
--- a/recipes/clair3-illumina/meta.yaml
+++ b/recipes/clair3-illumina/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "clair3-illumina" %}
-{% set version = "1.0.4" %}
+{% set version = "1.0.8" %}
 
 package:
   name: {{ name }}
@@ -7,11 +7,13 @@ package:
 
 source:
   url: https://github.com/HKU-BAL/Clair3/archive/refs/tags/v{{ version }}.zip
-  sha256: 886e4b8f12df65b69c2eba2f02a95a57582cc2a78d4b84941b9afe98a3616ac3
+  sha256: cd56e3d4c6a1e7f68f5aed7494eec13618eb12764b2f5cb38fdcfe1dbd01ae53
 
 build:
   number: 0
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   build:
@@ -20,6 +22,7 @@ requirements:
     - boost-cpp
   run:
     - clair3
+
 test:
   imports:
     - tensorflow
@@ -30,5 +33,11 @@ test:
 about:
   home: 'https://github.com/HKU-BAL/Clair3'
   license: BSD-3-Clause
+  license_family: BSD
   license_file: LICENSE.md
   summary: "Clair3 with libraries to support variant calling using Illumina short-reads. Version in sync with Clair3."
+  dev_url: 'https://github.com/HKU-BAL/Clair3'
+
+extra:
+  identifiers:
+    - doi:10.1038/s43588-022-00387-x
diff --git a/recipes/clair3/meta.yaml b/recipes/clair3/meta.yaml
index efb338db2ae34..d16a9e72fa7d1 100644
--- a/recipes/clair3/meta.yaml
+++ b/recipes/clair3/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "clair3" %}
-{% set version = "1.0.4" %}
+{% set version = "1.0.8" %}
 
 package:
   name: {{ name }}
@@ -7,11 +7,13 @@ package:
 
 source:
   url: http://www.bio8.cs.hku.hk/clair3/bioconda/Clair3_v{{ version }}.zip
-  sha256: 608184f7785a6b08fd88e9508133c78f04847c62aadc8c1a53394da935b496be
+  sha256: 3bc493269878af0d06c3fa006656d77ab01ae55d19c217fcf2ba1d68e2350a9d
 
 build:
   number: 1
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   build:
@@ -47,6 +49,9 @@ test:
     - longphase --version
     - which clair3.py
     - run_clair3.sh -v
+extra:
+  container:
+    extended-base: true
 
 about:
   home: 'https://github.com/HKU-BAL/Clair3'
diff --git a/recipes/classpro/meta.yaml b/recipes/classpro/meta.yaml
new file mode 100644
index 0000000000000..fc856a68ba9b6
--- /dev/null
+++ b/recipes/classpro/meta.yaml
@@ -0,0 +1,37 @@
+{% set name = "ClassPro" %}
+{% set version = "1.0.2" %}
+{% set sha256 = "2ae4e71ca3b1f8e31d1b55d607dcde58a4de84966f1d92a3c3a04e6ead167a61" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: "https://github.com/yoshihikosuzuki/ClassPro/releases/download/v{{ version }}/classpro-v{{ version }}_linux.tar.gz"
+  sha256: {{ sha256 }}
+
+build:
+  noarch: generic
+  number: 0
+  script:
+    - "mkdir -p $PREFIX/bin"
+    - "cp $SRC_DIR/bin/*  $PREFIX/bin/"
+    - "chmod u+x $PREFIX/bin/ClassPro $PREFIX/bin/ClassGS $PREFIX/bin/prof2class $PREFIX/bin/class2acc $PREFIX/bin/class2cns"
+  run_exports:
+    - {{ pin_subpackage("classpro", max_pin="x") }}
+
+requirements:
+  host:
+    - bzip2
+    - zlib
+    - libcurl
+
+
+test:
+  commands: 
+    - which ClassPro
+
+about:
+  license: https://github.com/yoshihikosuzuki/ClassPro/blob/main/LICENSE
+  summary: A K-mer classifier for HiFi reads .
+  home: https://github.com/yoshihikosuzuki/ClassPro/
diff --git a/recipes/clinvar-this/meta.yaml b/recipes/clinvar-this/meta.yaml
index 3bb691e4af87c..97310c0ee11e8 100644
--- a/recipes/clinvar-this/meta.yaml
+++ b/recipes/clinvar-this/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.2.1" %}
-{% set sha256 = "4c2c64aaa06030c6ea88855e25d57842ce71690a09f372e37388012765e58e00" %}
+{% set version = "0.15.5" %}
+{% set sha256 = "08b3eeab5d3c340ba3c7bb586256db0a03cfa592aeda0df8d0ede8b9273a436a" %}
 
 package:
   name: clinvar-this
@@ -12,6 +12,8 @@ source:
 build:
   script: python -m pip install --no-deps --ignore-installed .
   noarch: python
+  run_exports:
+    - {{ pin_subpackage("clinvar-this", max_pin="x.x") }}
   number: 0
 
 requirements:
diff --git a/recipes/clipkit/meta.yaml b/recipes/clipkit/meta.yaml
index 8654a6088b1b4..f1259b6f9302f 100644
--- a/recipes/clipkit/meta.yaml
+++ b/recipes/clipkit/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "clipkit" %}
-{% set version = "2.0.1" %}
+{% set version = "2.3.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,26 +7,28 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: ab36b014a10d7623f793b99d09e311f65ac6e49925d04bc3988b41d2acd8dcb7
+  sha256: 6e4f39f7b0e99b89de17aa57a26d1a7c6a1c064203b4fd436b413ad7d2e57ce5
 
 build:
   number: 0
   noarch: python
   entry_points:
     - clipkit = clipkit.clipkit:main
-  script: python -m pip install --no-deps --ignore-installed . 
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation . -vvv
+  run_exports:
+    - {{ pin_subpackage('clipkit', max_pin="x") }}
 
 requirements:
   host:
+    - python >=3.9
     - pip
-    - python >=3
     - cython
     - biopython >=1.81
     - tqdm >=4.45.0
   run:
+    - python >=3.9
     - biopython >=1.81
     - numpy >=1.24.0
-    - python >=3
     - tqdm >=4.45.0
 
 test:
@@ -39,4 +41,10 @@ about:
   home: "https://github.com/jlsteenwyk/clipkit"
   license: MIT
   license_family: MIT
+  license_file: LICENSE.md
   summary: "Alignment trimming software for phylogenetics."
+  doc_url: https://jlsteenwyk.com/ClipKIT/
+
+extra:
+  identifiers:
+    - doi:10.1371/journal.pbio.3001007
diff --git a/recipes/clippy/meta.yaml b/recipes/clippy/meta.yaml
index d0948b1f86c5b..53f2af39d28f4 100644
--- a/recipes/clippy/meta.yaml
+++ b/recipes/clippy/meta.yaml
@@ -10,29 +10,33 @@ source:
   sha256: 1fc00fd3df22524cb28974b7aae2d5fc20c6c23c5b84312dbc09ea275cebcf86
 
 build:
-  number: 0
+  number: 1
   entry_points:
     - clippy = clip:main
   script: "{{ PYTHON }} -m pip install . -vv --ignore-installed --no-deps"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage("clippy", max_pin='x.x') }}
 
 requirements:
   host:
     - pip
-    - python>=3.8
+    - python >=3.8
+    - openssl
   run:
-    - python>=3.8
-    - bedtools=2.26.0
-    - numpy>=1.19.0,<1.20.3
-    - numpy-base>=1.19.0,<1.20.3
+    - python >=3.8
+    - bedtools =2.26.0
+    - samtools =1.9
+    - openssl
+    - numpy >=1.19.0,<1.20.3
     - numpydoc
     - pandas
     - pybedtools
     - scipy
     - matplotlib-base
-    - dash=1.20.0
-    - dash-bootstrap-components=0.11.3
-    - werkzeug=2.0.0
+    - dash =1.20.0
+    - dash-bootstrap-components =0.11.3
+    - werkzeug =2.0.0
 
 test:
   imports:
diff --git a/recipes/clonalframeml/meta.yaml b/recipes/clonalframeml/meta.yaml
index e90bef289093c..eb47de77ebb1c 100644
--- a/recipes/clonalframeml/meta.yaml
+++ b/recipes/clonalframeml/meta.yaml
@@ -1,13 +1,18 @@
+{% set name = "clonalframeml" %}
+{% set version = "1.13" %}
+
 package:
-  name: clonalframeml
-  version: "1.12"
+  name: {{ name }}
+  version: {{ version }}
 
 build:
-  number: 4
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('clonalframeml', max_pin="x") }}
 
 source:
-  url: https://github.com/xavierdidelot/ClonalFrameML/archive/v1.12.tar.gz
-  sha256: ef76705c1a0f1343184f956cd0bdc96c2cfdbb998177330b09b6df84c74c2de6
+  url: https://github.com/xavierdidelot/ClonalFrameML/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 6056109380c695020afa0c26f4ce49dcb9267f1a8f26dfb42629bfa63ac25e6e
 
 requirements:
   build:
@@ -20,6 +25,8 @@ test:
 
 about:
   home: https://github.com/xavierdidelot/ClonalFrameML
-  license: GPLv3
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE
   summary: Efficient inferencing of recombination in bacterial genomes
-
+  doc_url: https://github.com/xavierdidelot/clonalframeml/wiki
diff --git a/recipes/clustalo/build.sh b/recipes/clustalo/build.sh
index 41aa12050e103..7e25d7c16114b 100644
--- a/recipes/clustalo/build.sh
+++ b/recipes/clustalo/build.sh
@@ -1,5 +1,8 @@
 #!/bin/bash
 
+# use newer config.guess and config.sub that support linux-aarch64
+cp ${RECIPE_DIR}/config.* .
+
 export CPPFLAGS="-I$PREFIX/include"
 export LDFLAGS="-L$PREFIX/lib"
 
@@ -9,7 +12,7 @@ if [ "$(uname)" == "Darwin" ]; then
 else
     ./configure --prefix=$PREFIX OPENMP_CFLAGS='-fopenmp' CFLAGS='-DHAVE_OPENMP'
 fi
-make
+make -j ${CPU_COUNT}
 
 mkdir -p $PREFIX/bin
 cp $SRC_DIR/src/clustalo $PREFIX/bin/$PKG_NAME
diff --git a/recipes/clustalo/config.guess b/recipes/clustalo/config.guess
new file mode 100644
index 0000000000000..1972fda8eb05d
--- /dev/null
+++ b/recipes/clustalo/config.guess
@@ -0,0 +1,1700 @@
+#! /bin/sh
+# Attempt to guess a canonical system name.
+#   Copyright 1992-2021 Free Software Foundation, Inc.
+
+timestamp='2021-01-25'
+
+# This file is free software; you can redistribute it and/or modify it
+# under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+# General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, see <https://www.gnu.org/licenses/>.
+#
+# As a special exception to the GNU General Public License, if you
+# distribute this file as part of a program that contains a
+# configuration script generated by Autoconf, you may include it under
+# the same distribution terms that you use for the rest of that
+# program.  This Exception is an additional permission under section 7
+# of the GNU General Public License, version 3 ("GPLv3").
+#
+# Originally written by Per Bothner; maintained since 2000 by Ben Elliston.
+#
+# You can get the latest version of this script from:
+# https://git.savannah.gnu.org/cgit/config.git/plain/config.guess
+#
+# Please send patches to <config-patches@gnu.org>.
+
+
+me=$(echo "$0" | sed -e 's,.*/,,')
+
+usage="\
+Usage: $0 [OPTION]
+
+Output the configuration name of the system \`$me' is run on.
+
+Options:
+  -h, --help         print this help, then exit
+  -t, --time-stamp   print date of last modification, then exit
+  -v, --version      print version number, then exit
+
+Report bugs and patches to <config-patches@gnu.org>."
+
+version="\
+GNU config.guess ($timestamp)
+
+Originally written by Per Bothner.
+Copyright 1992-2021 Free Software Foundation, Inc.
+
+This is free software; see the source for copying conditions.  There is NO
+warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE."
+
+help="
+Try \`$me --help' for more information."
+
+# Parse command line
+while test $# -gt 0 ; do
+  case $1 in
+    --time-stamp | --time* | -t )
+       echo "$timestamp" ; exit ;;
+    --version | -v )
+       echo "$version" ; exit ;;
+    --help | --h* | -h )
+       echo "$usage"; exit ;;
+    -- )     # Stop option processing
+       shift; break ;;
+    - )	# Use stdin as input.
+       break ;;
+    -* )
+       echo "$me: invalid option $1$help" >&2
+       exit 1 ;;
+    * )
+       break ;;
+  esac
+done
+
+if test $# != 0; then
+  echo "$me: too many arguments$help" >&2
+  exit 1
+fi
+
+# CC_FOR_BUILD -- compiler used by this script. Note that the use of a
+# compiler to aid in system detection is discouraged as it requires
+# temporary files to be created and, as you can see below, it is a
+# headache to deal with in a portable fashion.
+
+# Historically, `CC_FOR_BUILD' used to be named `HOST_CC'. We still
+# use `HOST_CC' if defined, but it is deprecated.
+
+# Portable tmp directory creation inspired by the Autoconf team.
+
+tmp=
+# shellcheck disable=SC2172
+trap 'test -z "$tmp" || rm -fr "$tmp"' 0 1 2 13 15
+
+set_cc_for_build() {
+    # prevent multiple calls if $tmp is already set
+    test "$tmp" && return 0
+    : "${TMPDIR=/tmp}"
+    # shellcheck disable=SC2039
+    { tmp=$( (umask 077 && mktemp -d "$TMPDIR/cgXXXXXX") 2>/dev/null) && test -n "$tmp" && test -d "$tmp" ; } ||
+	{ test -n "$RANDOM" && tmp=$TMPDIR/cg$$-$RANDOM && (umask 077 && mkdir "$tmp" 2>/dev/null) ; } ||
+	{ tmp=$TMPDIR/cg-$$ && (umask 077 && mkdir "$tmp" 2>/dev/null) && echo "Warning: creating insecure temp directory" >&2 ; } ||
+	{ echo "$me: cannot create a temporary directory in $TMPDIR" >&2 ; exit 1 ; }
+    dummy=$tmp/dummy
+    case ${CC_FOR_BUILD-},${HOST_CC-},${CC-} in
+	,,)    echo "int x;" > "$dummy.c"
+	       for driver in cc gcc c89 c99 ; do
+		   if ($driver -c -o "$dummy.o" "$dummy.c") >/dev/null 2>&1 ; then
+		       CC_FOR_BUILD="$driver"
+		       break
+		   fi
+	       done
+	       if test x"$CC_FOR_BUILD" = x ; then
+		   CC_FOR_BUILD=no_compiler_found
+	       fi
+	       ;;
+	,,*)   CC_FOR_BUILD=$CC ;;
+	,*,*)  CC_FOR_BUILD=$HOST_CC ;;
+    esac
+}
+
+# This is needed to find uname on a Pyramid OSx when run in the BSD universe.
+# (ghazi@noc.rutgers.edu 1994-08-24)
+if test -f /.attbin/uname ; then
+	PATH=$PATH:/.attbin ; export PATH
+fi
+
+UNAME_MACHINE=$( (uname -m) 2>/dev/null) || UNAME_MACHINE=unknown
+UNAME_RELEASE=$( (uname -r) 2>/dev/null) || UNAME_RELEASE=unknown
+UNAME_SYSTEM=$( (uname -s) 2>/dev/null) || UNAME_SYSTEM=unknown
+UNAME_VERSION=$( (uname -v) 2>/dev/null) || UNAME_VERSION=unknown
+
+case "$UNAME_SYSTEM" in
+Linux|GNU|GNU/*)
+	LIBC=unknown
+
+	set_cc_for_build
+	cat <<-EOF > "$dummy.c"
+	#include <features.h>
+	#if defined(__UCLIBC__)
+	LIBC=uclibc
+	#elif defined(__dietlibc__)
+	LIBC=dietlibc
+	#elif defined(__GLIBC__)
+	LIBC=gnu
+	#else
+	#include <stdarg.h>
+	/* First heuristic to detect musl libc.  */
+	#ifdef __DEFINED_va_list
+	LIBC=musl
+	#endif
+	#endif
+	EOF
+	eval "$($CC_FOR_BUILD -E "$dummy.c" 2>/dev/null | grep '^LIBC' | sed 's, ,,g')"
+
+	# Second heuristic to detect musl libc.
+	if [ "$LIBC" = unknown ] &&
+	   command -v ldd >/dev/null &&
+	   ldd --version 2>&1 | grep -q ^musl; then
+		LIBC=musl
+	fi
+
+	# If the system lacks a compiler, then just pick glibc.
+	# We could probably try harder.
+	if [ "$LIBC" = unknown ]; then
+		LIBC=gnu
+	fi
+	;;
+esac
+
+# Note: order is significant - the case branches are not exclusive.
+
+case "$UNAME_MACHINE:$UNAME_SYSTEM:$UNAME_RELEASE:$UNAME_VERSION" in
+    *:NetBSD:*:*)
+	# NetBSD (nbsd) targets should (where applicable) match one or
+	# more of the tuples: *-*-netbsdelf*, *-*-netbsdaout*,
+	# *-*-netbsdecoff* and *-*-netbsd*.  For targets that recently
+	# switched to ELF, *-*-netbsd* would select the old
+	# object file format.  This provides both forward
+	# compatibility and a consistent mechanism for selecting the
+	# object file format.
+	#
+	# Note: NetBSD doesn't particularly care about the vendor
+	# portion of the name.  We always set it to "unknown".
+	UNAME_MACHINE_ARCH=$( (uname -p 2>/dev/null || \
+	    /sbin/sysctl -n hw.machine_arch 2>/dev/null || \
+	    /usr/sbin/sysctl -n hw.machine_arch 2>/dev/null || \
+	    echo unknown))
+	case "$UNAME_MACHINE_ARCH" in
+	    aarch64eb) machine=aarch64_be-unknown ;;
+	    armeb) machine=armeb-unknown ;;
+	    arm*) machine=arm-unknown ;;
+	    sh3el) machine=shl-unknown ;;
+	    sh3eb) machine=sh-unknown ;;
+	    sh5el) machine=sh5le-unknown ;;
+	    earmv*)
+		arch=$(echo "$UNAME_MACHINE_ARCH" | sed -e 's,^e\(armv[0-9]\).*$,\1,')
+		endian=$(echo "$UNAME_MACHINE_ARCH" | sed -ne 's,^.*\(eb\)$,\1,p')
+		machine="${arch}${endian}"-unknown
+		;;
+	    *) machine="$UNAME_MACHINE_ARCH"-unknown ;;
+	esac
+	# The Operating System including object format, if it has switched
+	# to ELF recently (or will in the future) and ABI.
+	case "$UNAME_MACHINE_ARCH" in
+	    earm*)
+		os=netbsdelf
+		;;
+	    arm*|i386|m68k|ns32k|sh3*|sparc|vax)
+		set_cc_for_build
+		if echo __ELF__ | $CC_FOR_BUILD -E - 2>/dev/null \
+			| grep -q __ELF__
+		then
+		    # Once all utilities can be ECOFF (netbsdecoff) or a.out (netbsdaout).
+		    # Return netbsd for either.  FIX?
+		    os=netbsd
+		else
+		    os=netbsdelf
+		fi
+		;;
+	    *)
+		os=netbsd
+		;;
+	esac
+	# Determine ABI tags.
+	case "$UNAME_MACHINE_ARCH" in
+	    earm*)
+		expr='s/^earmv[0-9]/-eabi/;s/eb$//'
+		abi=$(echo "$UNAME_MACHINE_ARCH" | sed -e "$expr")
+		;;
+	esac
+	# The OS release
+	# Debian GNU/NetBSD machines have a different userland, and
+	# thus, need a distinct triplet. However, they do not need
+	# kernel version information, so it can be replaced with a
+	# suitable tag, in the style of linux-gnu.
+	case "$UNAME_VERSION" in
+	    Debian*)
+		release='-gnu'
+		;;
+	    *)
+		release=$(echo "$UNAME_RELEASE" | sed -e 's/[-_].*//' | cut -d. -f1,2)
+		;;
+	esac
+	# Since CPU_TYPE-MANUFACTURER-KERNEL-OPERATING_SYSTEM:
+	# contains redundant information, the shorter form:
+	# CPU_TYPE-MANUFACTURER-OPERATING_SYSTEM is used.
+	echo "$machine-${os}${release}${abi-}"
+	exit ;;
+    *:Bitrig:*:*)
+	UNAME_MACHINE_ARCH=$(arch | sed 's/Bitrig.//')
+	echo "$UNAME_MACHINE_ARCH"-unknown-bitrig"$UNAME_RELEASE"
+	exit ;;
+    *:OpenBSD:*:*)
+	UNAME_MACHINE_ARCH=$(arch | sed 's/OpenBSD.//')
+	echo "$UNAME_MACHINE_ARCH"-unknown-openbsd"$UNAME_RELEASE"
+	exit ;;
+    *:LibertyBSD:*:*)
+	UNAME_MACHINE_ARCH=$(arch | sed 's/^.*BSD\.//')
+	echo "$UNAME_MACHINE_ARCH"-unknown-libertybsd"$UNAME_RELEASE"
+	exit ;;
+    *:MidnightBSD:*:*)
+	echo "$UNAME_MACHINE"-unknown-midnightbsd"$UNAME_RELEASE"
+	exit ;;
+    *:ekkoBSD:*:*)
+	echo "$UNAME_MACHINE"-unknown-ekkobsd"$UNAME_RELEASE"
+	exit ;;
+    *:SolidBSD:*:*)
+	echo "$UNAME_MACHINE"-unknown-solidbsd"$UNAME_RELEASE"
+	exit ;;
+    *:OS108:*:*)
+	echo "$UNAME_MACHINE"-unknown-os108_"$UNAME_RELEASE"
+	exit ;;
+    macppc:MirBSD:*:*)
+	echo powerpc-unknown-mirbsd"$UNAME_RELEASE"
+	exit ;;
+    *:MirBSD:*:*)
+	echo "$UNAME_MACHINE"-unknown-mirbsd"$UNAME_RELEASE"
+	exit ;;
+    *:Sortix:*:*)
+	echo "$UNAME_MACHINE"-unknown-sortix
+	exit ;;
+    *:Twizzler:*:*)
+	echo "$UNAME_MACHINE"-unknown-twizzler
+	exit ;;
+    *:Redox:*:*)
+	echo "$UNAME_MACHINE"-unknown-redox
+	exit ;;
+    mips:OSF1:*.*)
+	echo mips-dec-osf1
+	exit ;;
+    alpha:OSF1:*:*)
+	case $UNAME_RELEASE in
+	*4.0)
+		UNAME_RELEASE=$(/usr/sbin/sizer -v | awk '{print $3}')
+		;;
+	*5.*)
+		UNAME_RELEASE=$(/usr/sbin/sizer -v | awk '{print $4}')
+		;;
+	esac
+	# According to Compaq, /usr/sbin/psrinfo has been available on
+	# OSF/1 and Tru64 systems produced since 1995.  I hope that
+	# covers most systems running today.  This code pipes the CPU
+	# types through head -n 1, so we only detect the type of CPU 0.
+	ALPHA_CPU_TYPE=$(/usr/sbin/psrinfo -v | sed -n -e 's/^  The alpha \(.*\) processor.*$/\1/p' | head -n 1)
+	case "$ALPHA_CPU_TYPE" in
+	    "EV4 (21064)")
+		UNAME_MACHINE=alpha ;;
+	    "EV4.5 (21064)")
+		UNAME_MACHINE=alpha ;;
+	    "LCA4 (21066/21068)")
+		UNAME_MACHINE=alpha ;;
+	    "EV5 (21164)")
+		UNAME_MACHINE=alphaev5 ;;
+	    "EV5.6 (21164A)")
+		UNAME_MACHINE=alphaev56 ;;
+	    "EV5.6 (21164PC)")
+		UNAME_MACHINE=alphapca56 ;;
+	    "EV5.7 (21164PC)")
+		UNAME_MACHINE=alphapca57 ;;
+	    "EV6 (21264)")
+		UNAME_MACHINE=alphaev6 ;;
+	    "EV6.7 (21264A)")
+		UNAME_MACHINE=alphaev67 ;;
+	    "EV6.8CB (21264C)")
+		UNAME_MACHINE=alphaev68 ;;
+	    "EV6.8AL (21264B)")
+		UNAME_MACHINE=alphaev68 ;;
+	    "EV6.8CX (21264D)")
+		UNAME_MACHINE=alphaev68 ;;
+	    "EV6.9A (21264/EV69A)")
+		UNAME_MACHINE=alphaev69 ;;
+	    "EV7 (21364)")
+		UNAME_MACHINE=alphaev7 ;;
+	    "EV7.9 (21364A)")
+		UNAME_MACHINE=alphaev79 ;;
+	esac
+	# A Pn.n version is a patched version.
+	# A Vn.n version is a released version.
+	# A Tn.n version is a released field test version.
+	# A Xn.n version is an unreleased experimental baselevel.
+	# 1.2 uses "1.2" for uname -r.
+	echo "$UNAME_MACHINE"-dec-osf"$(echo "$UNAME_RELEASE" | sed -e 's/^[PVTX]//' | tr ABCDEFGHIJKLMNOPQRSTUVWXYZ abcdefghijklmnopqrstuvwxyz)"
+	# Reset EXIT trap before exiting to avoid spurious non-zero exit code.
+	exitcode=$?
+	trap '' 0
+	exit $exitcode ;;
+    Amiga*:UNIX_System_V:4.0:*)
+	echo m68k-unknown-sysv4
+	exit ;;
+    *:[Aa]miga[Oo][Ss]:*:*)
+	echo "$UNAME_MACHINE"-unknown-amigaos
+	exit ;;
+    *:[Mm]orph[Oo][Ss]:*:*)
+	echo "$UNAME_MACHINE"-unknown-morphos
+	exit ;;
+    *:OS/390:*:*)
+	echo i370-ibm-openedition
+	exit ;;
+    *:z/VM:*:*)
+	echo s390-ibm-zvmoe
+	exit ;;
+    *:OS400:*:*)
+	echo powerpc-ibm-os400
+	exit ;;
+    arm:RISC*:1.[012]*:*|arm:riscix:1.[012]*:*)
+	echo arm-acorn-riscix"$UNAME_RELEASE"
+	exit ;;
+    arm*:riscos:*:*|arm*:RISCOS:*:*)
+	echo arm-unknown-riscos
+	exit ;;
+    SR2?01:HI-UX/MPP:*:* | SR8000:HI-UX/MPP:*:*)
+	echo hppa1.1-hitachi-hiuxmpp
+	exit ;;
+    Pyramid*:OSx*:*:* | MIS*:OSx*:*:* | MIS*:SMP_DC-OSx*:*:*)
+	# akee@wpdis03.wpafb.af.mil (Earle F. Ake) contributed MIS and NILE.
+	if test "$( (/bin/universe) 2>/dev/null)" = att ; then
+		echo pyramid-pyramid-sysv3
+	else
+		echo pyramid-pyramid-bsd
+	fi
+	exit ;;
+    NILE*:*:*:dcosx)
+	echo pyramid-pyramid-svr4
+	exit ;;
+    DRS?6000:unix:4.0:6*)
+	echo sparc-icl-nx6
+	exit ;;
+    DRS?6000:UNIX_SV:4.2*:7* | DRS?6000:isis:4.2*:7*)
+	case $(/usr/bin/uname -p) in
+	    sparc) echo sparc-icl-nx7; exit ;;
+	esac ;;
+    s390x:SunOS:*:*)
+	echo "$UNAME_MACHINE"-ibm-solaris2"$(echo "$UNAME_RELEASE" | sed -e 's/[^.]*//')"
+	exit ;;
+    sun4H:SunOS:5.*:*)
+	echo sparc-hal-solaris2"$(echo "$UNAME_RELEASE"|sed -e 's/[^.]*//')"
+	exit ;;
+    sun4*:SunOS:5.*:* | tadpole*:SunOS:5.*:*)
+	echo sparc-sun-solaris2"$(echo "$UNAME_RELEASE" | sed -e 's/[^.]*//')"
+	exit ;;
+    i86pc:AuroraUX:5.*:* | i86xen:AuroraUX:5.*:*)
+	echo i386-pc-auroraux"$UNAME_RELEASE"
+	exit ;;
+    i86pc:SunOS:5.*:* | i86xen:SunOS:5.*:*)
+	set_cc_for_build
+	SUN_ARCH=i386
+	# If there is a compiler, see if it is configured for 64-bit objects.
+	# Note that the Sun cc does not turn __LP64__ into 1 like gcc does.
+	# This test works for both compilers.
+	if test "$CC_FOR_BUILD" != no_compiler_found; then
+	    if (echo '#ifdef __amd64'; echo IS_64BIT_ARCH; echo '#endif') | \
+		(CCOPTS="" $CC_FOR_BUILD -E - 2>/dev/null) | \
+		grep IS_64BIT_ARCH >/dev/null
+	    then
+		SUN_ARCH=x86_64
+	    fi
+	fi
+	echo "$SUN_ARCH"-pc-solaris2"$(echo "$UNAME_RELEASE"|sed -e 's/[^.]*//')"
+	exit ;;
+    sun4*:SunOS:6*:*)
+	# According to config.sub, this is the proper way to canonicalize
+	# SunOS6.  Hard to guess exactly what SunOS6 will be like, but
+	# it's likely to be more like Solaris than SunOS4.
+	echo sparc-sun-solaris3"$(echo "$UNAME_RELEASE"|sed -e 's/[^.]*//')"
+	exit ;;
+    sun4*:SunOS:*:*)
+	case "$(/usr/bin/arch -k)" in
+	    Series*|S4*)
+		UNAME_RELEASE=$(uname -v)
+		;;
+	esac
+	# Japanese Language versions have a version number like `4.1.3-JL'.
+	echo sparc-sun-sunos"$(echo "$UNAME_RELEASE"|sed -e 's/-/_/')"
+	exit ;;
+    sun3*:SunOS:*:*)
+	echo m68k-sun-sunos"$UNAME_RELEASE"
+	exit ;;
+    sun*:*:4.2BSD:*)
+	UNAME_RELEASE=$( (sed 1q /etc/motd | awk '{print substr($5,1,3)}') 2>/dev/null)
+	test "x$UNAME_RELEASE" = x && UNAME_RELEASE=3
+	case "$(/bin/arch)" in
+	    sun3)
+		echo m68k-sun-sunos"$UNAME_RELEASE"
+		;;
+	    sun4)
+		echo sparc-sun-sunos"$UNAME_RELEASE"
+		;;
+	esac
+	exit ;;
+    aushp:SunOS:*:*)
+	echo sparc-auspex-sunos"$UNAME_RELEASE"
+	exit ;;
+    # The situation for MiNT is a little confusing.  The machine name
+    # can be virtually everything (everything which is not
+    # "atarist" or "atariste" at least should have a processor
+    # > m68000).  The system name ranges from "MiNT" over "FreeMiNT"
+    # to the lowercase version "mint" (or "freemint").  Finally
+    # the system name "TOS" denotes a system which is actually not
+    # MiNT.  But MiNT is downward compatible to TOS, so this should
+    # be no problem.
+    atarist[e]:*MiNT:*:* | atarist[e]:*mint:*:* | atarist[e]:*TOS:*:*)
+	echo m68k-atari-mint"$UNAME_RELEASE"
+	exit ;;
+    atari*:*MiNT:*:* | atari*:*mint:*:* | atarist[e]:*TOS:*:*)
+	echo m68k-atari-mint"$UNAME_RELEASE"
+	exit ;;
+    *falcon*:*MiNT:*:* | *falcon*:*mint:*:* | *falcon*:*TOS:*:*)
+	echo m68k-atari-mint"$UNAME_RELEASE"
+	exit ;;
+    milan*:*MiNT:*:* | milan*:*mint:*:* | *milan*:*TOS:*:*)
+	echo m68k-milan-mint"$UNAME_RELEASE"
+	exit ;;
+    hades*:*MiNT:*:* | hades*:*mint:*:* | *hades*:*TOS:*:*)
+	echo m68k-hades-mint"$UNAME_RELEASE"
+	exit ;;
+    *:*MiNT:*:* | *:*mint:*:* | *:*TOS:*:*)
+	echo m68k-unknown-mint"$UNAME_RELEASE"
+	exit ;;
+    m68k:machten:*:*)
+	echo m68k-apple-machten"$UNAME_RELEASE"
+	exit ;;
+    powerpc:machten:*:*)
+	echo powerpc-apple-machten"$UNAME_RELEASE"
+	exit ;;
+    RISC*:Mach:*:*)
+	echo mips-dec-mach_bsd4.3
+	exit ;;
+    RISC*:ULTRIX:*:*)
+	echo mips-dec-ultrix"$UNAME_RELEASE"
+	exit ;;
+    VAX*:ULTRIX*:*:*)
+	echo vax-dec-ultrix"$UNAME_RELEASE"
+	exit ;;
+    2020:CLIX:*:* | 2430:CLIX:*:*)
+	echo clipper-intergraph-clix"$UNAME_RELEASE"
+	exit ;;
+    mips:*:*:UMIPS | mips:*:*:RISCos)
+	set_cc_for_build
+	sed 's/^	//' << EOF > "$dummy.c"
+#ifdef __cplusplus
+#include <stdio.h>  /* for printf() prototype */
+	int main (int argc, char *argv[]) {
+#else
+	int main (argc, argv) int argc; char *argv[]; {
+#endif
+	#if defined (host_mips) && defined (MIPSEB)
+	#if defined (SYSTYPE_SYSV)
+	  printf ("mips-mips-riscos%ssysv\\n", argv[1]); exit (0);
+	#endif
+	#if defined (SYSTYPE_SVR4)
+	  printf ("mips-mips-riscos%ssvr4\\n", argv[1]); exit (0);
+	#endif
+	#if defined (SYSTYPE_BSD43) || defined(SYSTYPE_BSD)
+	  printf ("mips-mips-riscos%sbsd\\n", argv[1]); exit (0);
+	#endif
+	#endif
+	  exit (-1);
+	}
+EOF
+	$CC_FOR_BUILD -o "$dummy" "$dummy.c" &&
+	  dummyarg=$(echo "$UNAME_RELEASE" | sed -n 's/\([0-9]*\).*/\1/p') &&
+	  SYSTEM_NAME=$("$dummy" "$dummyarg") &&
+	    { echo "$SYSTEM_NAME"; exit; }
+	echo mips-mips-riscos"$UNAME_RELEASE"
+	exit ;;
+    Motorola:PowerMAX_OS:*:*)
+	echo powerpc-motorola-powermax
+	exit ;;
+    Motorola:*:4.3:PL8-*)
+	echo powerpc-harris-powermax
+	exit ;;
+    Night_Hawk:*:*:PowerMAX_OS | Synergy:PowerMAX_OS:*:*)
+	echo powerpc-harris-powermax
+	exit ;;
+    Night_Hawk:Power_UNIX:*:*)
+	echo powerpc-harris-powerunix
+	exit ;;
+    m88k:CX/UX:7*:*)
+	echo m88k-harris-cxux7
+	exit ;;
+    m88k:*:4*:R4*)
+	echo m88k-motorola-sysv4
+	exit ;;
+    m88k:*:3*:R3*)
+	echo m88k-motorola-sysv3
+	exit ;;
+    AViiON:dgux:*:*)
+	# DG/UX returns AViiON for all architectures
+	UNAME_PROCESSOR=$(/usr/bin/uname -p)
+	if test "$UNAME_PROCESSOR" = mc88100 || test "$UNAME_PROCESSOR" = mc88110
+	then
+	    if test "$TARGET_BINARY_INTERFACE"x = m88kdguxelfx || \
+	       test "$TARGET_BINARY_INTERFACE"x = x
+	    then
+		echo m88k-dg-dgux"$UNAME_RELEASE"
+	    else
+		echo m88k-dg-dguxbcs"$UNAME_RELEASE"
+	    fi
+	else
+	    echo i586-dg-dgux"$UNAME_RELEASE"
+	fi
+	exit ;;
+    M88*:DolphinOS:*:*)	# DolphinOS (SVR3)
+	echo m88k-dolphin-sysv3
+	exit ;;
+    M88*:*:R3*:*)
+	# Delta 88k system running SVR3
+	echo m88k-motorola-sysv3
+	exit ;;
+    XD88*:*:*:*) # Tektronix XD88 system running UTekV (SVR3)
+	echo m88k-tektronix-sysv3
+	exit ;;
+    Tek43[0-9][0-9]:UTek:*:*) # Tektronix 4300 system running UTek (BSD)
+	echo m68k-tektronix-bsd
+	exit ;;
+    *:IRIX*:*:*)
+	echo mips-sgi-irix"$(echo "$UNAME_RELEASE"|sed -e 's/-/_/g')"
+	exit ;;
+    ????????:AIX?:[12].1:2)   # AIX 2.2.1 or AIX 2.1.1 is RT/PC AIX.
+	echo romp-ibm-aix     # uname -m gives an 8 hex-code CPU id
+	exit ;;               # Note that: echo "'$(uname -s)'" gives 'AIX '
+    i*86:AIX:*:*)
+	echo i386-ibm-aix
+	exit ;;
+    ia64:AIX:*:*)
+	if test -x /usr/bin/oslevel ; then
+		IBM_REV=$(/usr/bin/oslevel)
+	else
+		IBM_REV="$UNAME_VERSION.$UNAME_RELEASE"
+	fi
+	echo "$UNAME_MACHINE"-ibm-aix"$IBM_REV"
+	exit ;;
+    *:AIX:2:3)
+	if grep bos325 /usr/include/stdio.h >/dev/null 2>&1; then
+		set_cc_for_build
+		sed 's/^		//' << EOF > "$dummy.c"
+		#include <sys/systemcfg.h>
+
+		main()
+			{
+			if (!__power_pc())
+				exit(1);
+			puts("powerpc-ibm-aix3.2.5");
+			exit(0);
+			}
+EOF
+		if $CC_FOR_BUILD -o "$dummy" "$dummy.c" && SYSTEM_NAME=$("$dummy")
+		then
+			echo "$SYSTEM_NAME"
+		else
+			echo rs6000-ibm-aix3.2.5
+		fi
+	elif grep bos324 /usr/include/stdio.h >/dev/null 2>&1; then
+		echo rs6000-ibm-aix3.2.4
+	else
+		echo rs6000-ibm-aix3.2
+	fi
+	exit ;;
+    *:AIX:*:[4567])
+	IBM_CPU_ID=$(/usr/sbin/lsdev -C -c processor -S available | sed 1q | awk '{ print $1 }')
+	if /usr/sbin/lsattr -El "$IBM_CPU_ID" | grep ' POWER' >/dev/null 2>&1; then
+		IBM_ARCH=rs6000
+	else
+		IBM_ARCH=powerpc
+	fi
+	if test -x /usr/bin/lslpp ; then
+		IBM_REV=$(/usr/bin/lslpp -Lqc bos.rte.libc |
+			   awk -F: '{ print $3 }' | sed s/[0-9]*$/0/)
+	else
+		IBM_REV="$UNAME_VERSION.$UNAME_RELEASE"
+	fi
+	echo "$IBM_ARCH"-ibm-aix"$IBM_REV"
+	exit ;;
+    *:AIX:*:*)
+	echo rs6000-ibm-aix
+	exit ;;
+    ibmrt:4.4BSD:*|romp-ibm:4.4BSD:*)
+	echo romp-ibm-bsd4.4
+	exit ;;
+    ibmrt:*BSD:*|romp-ibm:BSD:*)            # covers RT/PC BSD and
+	echo romp-ibm-bsd"$UNAME_RELEASE"   # 4.3 with uname added to
+	exit ;;                             # report: romp-ibm BSD 4.3
+    *:BOSX:*:*)
+	echo rs6000-bull-bosx
+	exit ;;
+    DPX/2?00:B.O.S.:*:*)
+	echo m68k-bull-sysv3
+	exit ;;
+    9000/[34]??:4.3bsd:1.*:*)
+	echo m68k-hp-bsd
+	exit ;;
+    hp300:4.4BSD:*:* | 9000/[34]??:4.3bsd:2.*:*)
+	echo m68k-hp-bsd4.4
+	exit ;;
+    9000/[34678]??:HP-UX:*:*)
+	HPUX_REV=$(echo "$UNAME_RELEASE"|sed -e 's/[^.]*.[0B]*//')
+	case "$UNAME_MACHINE" in
+	    9000/31?)            HP_ARCH=m68000 ;;
+	    9000/[34]??)         HP_ARCH=m68k ;;
+	    9000/[678][0-9][0-9])
+		if test -x /usr/bin/getconf; then
+		    sc_cpu_version=$(/usr/bin/getconf SC_CPU_VERSION 2>/dev/null)
+		    sc_kernel_bits=$(/usr/bin/getconf SC_KERNEL_BITS 2>/dev/null)
+		    case "$sc_cpu_version" in
+		      523) HP_ARCH=hppa1.0 ;; # CPU_PA_RISC1_0
+		      528) HP_ARCH=hppa1.1 ;; # CPU_PA_RISC1_1
+		      532)                      # CPU_PA_RISC2_0
+			case "$sc_kernel_bits" in
+			  32) HP_ARCH=hppa2.0n ;;
+			  64) HP_ARCH=hppa2.0w ;;
+			  '') HP_ARCH=hppa2.0 ;;   # HP-UX 10.20
+			esac ;;
+		    esac
+		fi
+		if test "$HP_ARCH" = ""; then
+		    set_cc_for_build
+		    sed 's/^		//' << EOF > "$dummy.c"
+
+		#define _HPUX_SOURCE
+		#include <stdlib.h>
+		#include <unistd.h>
+
+		int main ()
+		{
+		#if defined(_SC_KERNEL_BITS)
+		    long bits = sysconf(_SC_KERNEL_BITS);
+		#endif
+		    long cpu  = sysconf (_SC_CPU_VERSION);
+
+		    switch (cpu)
+			{
+			case CPU_PA_RISC1_0: puts ("hppa1.0"); break;
+			case CPU_PA_RISC1_1: puts ("hppa1.1"); break;
+			case CPU_PA_RISC2_0:
+		#if defined(_SC_KERNEL_BITS)
+			    switch (bits)
+				{
+				case 64: puts ("hppa2.0w"); break;
+				case 32: puts ("hppa2.0n"); break;
+				default: puts ("hppa2.0"); break;
+				} break;
+		#else  /* !defined(_SC_KERNEL_BITS) */
+			    puts ("hppa2.0"); break;
+		#endif
+			default: puts ("hppa1.0"); break;
+			}
+		    exit (0);
+		}
+EOF
+		    (CCOPTS="" $CC_FOR_BUILD -o "$dummy" "$dummy.c" 2>/dev/null) && HP_ARCH=$("$dummy")
+		    test -z "$HP_ARCH" && HP_ARCH=hppa
+		fi ;;
+	esac
+	if test "$HP_ARCH" = hppa2.0w
+	then
+	    set_cc_for_build
+
+	    # hppa2.0w-hp-hpux* has a 64-bit kernel and a compiler generating
+	    # 32-bit code.  hppa64-hp-hpux* has the same kernel and a compiler
+	    # generating 64-bit code.  GNU and HP use different nomenclature:
+	    #
+	    # $ CC_FOR_BUILD=cc ./config.guess
+	    # => hppa2.0w-hp-hpux11.23
+	    # $ CC_FOR_BUILD="cc +DA2.0w" ./config.guess
+	    # => hppa64-hp-hpux11.23
+
+	    if echo __LP64__ | (CCOPTS="" $CC_FOR_BUILD -E - 2>/dev/null) |
+		grep -q __LP64__
+	    then
+		HP_ARCH=hppa2.0w
+	    else
+		HP_ARCH=hppa64
+	    fi
+	fi
+	echo "$HP_ARCH"-hp-hpux"$HPUX_REV"
+	exit ;;
+    ia64:HP-UX:*:*)
+	HPUX_REV=$(echo "$UNAME_RELEASE"|sed -e 's/[^.]*.[0B]*//')
+	echo ia64-hp-hpux"$HPUX_REV"
+	exit ;;
+    3050*:HI-UX:*:*)
+	set_cc_for_build
+	sed 's/^	//' << EOF > "$dummy.c"
+	#include <unistd.h>
+	int
+	main ()
+	{
+	  long cpu = sysconf (_SC_CPU_VERSION);
+	  /* The order matters, because CPU_IS_HP_MC68K erroneously returns
+	     true for CPU_PA_RISC1_0.  CPU_IS_PA_RISC returns correct
+	     results, however.  */
+	  if (CPU_IS_PA_RISC (cpu))
+	    {
+	      switch (cpu)
+		{
+		  case CPU_PA_RISC1_0: puts ("hppa1.0-hitachi-hiuxwe2"); break;
+		  case CPU_PA_RISC1_1: puts ("hppa1.1-hitachi-hiuxwe2"); break;
+		  case CPU_PA_RISC2_0: puts ("hppa2.0-hitachi-hiuxwe2"); break;
+		  default: puts ("hppa-hitachi-hiuxwe2"); break;
+		}
+	    }
+	  else if (CPU_IS_HP_MC68K (cpu))
+	    puts ("m68k-hitachi-hiuxwe2");
+	  else puts ("unknown-hitachi-hiuxwe2");
+	  exit (0);
+	}
+EOF
+	$CC_FOR_BUILD -o "$dummy" "$dummy.c" && SYSTEM_NAME=$("$dummy") &&
+		{ echo "$SYSTEM_NAME"; exit; }
+	echo unknown-hitachi-hiuxwe2
+	exit ;;
+    9000/7??:4.3bsd:*:* | 9000/8?[79]:4.3bsd:*:*)
+	echo hppa1.1-hp-bsd
+	exit ;;
+    9000/8??:4.3bsd:*:*)
+	echo hppa1.0-hp-bsd
+	exit ;;
+    *9??*:MPE/iX:*:* | *3000*:MPE/iX:*:*)
+	echo hppa1.0-hp-mpeix
+	exit ;;
+    hp7??:OSF1:*:* | hp8?[79]:OSF1:*:*)
+	echo hppa1.1-hp-osf
+	exit ;;
+    hp8??:OSF1:*:*)
+	echo hppa1.0-hp-osf
+	exit ;;
+    i*86:OSF1:*:*)
+	if test -x /usr/sbin/sysversion ; then
+	    echo "$UNAME_MACHINE"-unknown-osf1mk
+	else
+	    echo "$UNAME_MACHINE"-unknown-osf1
+	fi
+	exit ;;
+    parisc*:Lites*:*:*)
+	echo hppa1.1-hp-lites
+	exit ;;
+    C1*:ConvexOS:*:* | convex:ConvexOS:C1*:*)
+	echo c1-convex-bsd
+	exit ;;
+    C2*:ConvexOS:*:* | convex:ConvexOS:C2*:*)
+	if getsysinfo -f scalar_acc
+	then echo c32-convex-bsd
+	else echo c2-convex-bsd
+	fi
+	exit ;;
+    C34*:ConvexOS:*:* | convex:ConvexOS:C34*:*)
+	echo c34-convex-bsd
+	exit ;;
+    C38*:ConvexOS:*:* | convex:ConvexOS:C38*:*)
+	echo c38-convex-bsd
+	exit ;;
+    C4*:ConvexOS:*:* | convex:ConvexOS:C4*:*)
+	echo c4-convex-bsd
+	exit ;;
+    CRAY*Y-MP:*:*:*)
+	echo ymp-cray-unicos"$UNAME_RELEASE" | sed -e 's/\.[^.]*$/.X/'
+	exit ;;
+    CRAY*[A-Z]90:*:*:*)
+	echo "$UNAME_MACHINE"-cray-unicos"$UNAME_RELEASE" \
+	| sed -e 's/CRAY.*\([A-Z]90\)/\1/' \
+	      -e y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/ \
+	      -e 's/\.[^.]*$/.X/'
+	exit ;;
+    CRAY*TS:*:*:*)
+	echo t90-cray-unicos"$UNAME_RELEASE" | sed -e 's/\.[^.]*$/.X/'
+	exit ;;
+    CRAY*T3E:*:*:*)
+	echo alphaev5-cray-unicosmk"$UNAME_RELEASE" | sed -e 's/\.[^.]*$/.X/'
+	exit ;;
+    CRAY*SV1:*:*:*)
+	echo sv1-cray-unicos"$UNAME_RELEASE" | sed -e 's/\.[^.]*$/.X/'
+	exit ;;
+    *:UNICOS/mp:*:*)
+	echo craynv-cray-unicosmp"$UNAME_RELEASE" | sed -e 's/\.[^.]*$/.X/'
+	exit ;;
+    F30[01]:UNIX_System_V:*:* | F700:UNIX_System_V:*:*)
+	FUJITSU_PROC=$(uname -m | tr ABCDEFGHIJKLMNOPQRSTUVWXYZ abcdefghijklmnopqrstuvwxyz)
+	FUJITSU_SYS=$(uname -p | tr ABCDEFGHIJKLMNOPQRSTUVWXYZ abcdefghijklmnopqrstuvwxyz | sed -e 's/\///')
+	FUJITSU_REL=$(echo "$UNAME_RELEASE" | sed -e 's/ /_/')
+	echo "${FUJITSU_PROC}-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}"
+	exit ;;
+    5000:UNIX_System_V:4.*:*)
+	FUJITSU_SYS=$(uname -p | tr ABCDEFGHIJKLMNOPQRSTUVWXYZ abcdefghijklmnopqrstuvwxyz | sed -e 's/\///')
+	FUJITSU_REL=$(echo "$UNAME_RELEASE" | tr ABCDEFGHIJKLMNOPQRSTUVWXYZ abcdefghijklmnopqrstuvwxyz | sed -e 's/ /_/')
+	echo "sparc-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}"
+	exit ;;
+    i*86:BSD/386:*:* | i*86:BSD/OS:*:* | *:Ascend\ Embedded/OS:*:*)
+	echo "$UNAME_MACHINE"-pc-bsdi"$UNAME_RELEASE"
+	exit ;;
+    sparc*:BSD/OS:*:*)
+	echo sparc-unknown-bsdi"$UNAME_RELEASE"
+	exit ;;
+    *:BSD/OS:*:*)
+	echo "$UNAME_MACHINE"-unknown-bsdi"$UNAME_RELEASE"
+	exit ;;
+    arm:FreeBSD:*:*)
+	UNAME_PROCESSOR=$(uname -p)
+	set_cc_for_build
+	if echo __ARM_PCS_VFP | $CC_FOR_BUILD -E - 2>/dev/null \
+	    | grep -q __ARM_PCS_VFP
+	then
+	    echo "${UNAME_PROCESSOR}"-unknown-freebsd"$(echo ${UNAME_RELEASE}|sed -e 's/[-(].*//')"-gnueabi
+	else
+	    echo "${UNAME_PROCESSOR}"-unknown-freebsd"$(echo ${UNAME_RELEASE}|sed -e 's/[-(].*//')"-gnueabihf
+	fi
+	exit ;;
+    *:FreeBSD:*:*)
+	UNAME_PROCESSOR=$(/usr/bin/uname -p)
+	case "$UNAME_PROCESSOR" in
+	    amd64)
+		UNAME_PROCESSOR=x86_64 ;;
+	    i386)
+		UNAME_PROCESSOR=i586 ;;
+	esac
+	echo "$UNAME_PROCESSOR"-unknown-freebsd"$(echo "$UNAME_RELEASE"|sed -e 's/[-(].*//')"
+	exit ;;
+    i*:CYGWIN*:*)
+	echo "$UNAME_MACHINE"-pc-cygwin
+	exit ;;
+    *:MINGW64*:*)
+	echo "$UNAME_MACHINE"-pc-mingw64
+	exit ;;
+    *:MINGW*:*)
+	echo "$UNAME_MACHINE"-pc-mingw32
+	exit ;;
+    *:MSYS*:*)
+	echo "$UNAME_MACHINE"-pc-msys
+	exit ;;
+    i*:PW*:*)
+	echo "$UNAME_MACHINE"-pc-pw32
+	exit ;;
+    *:Interix*:*)
+	case "$UNAME_MACHINE" in
+	    x86)
+		echo i586-pc-interix"$UNAME_RELEASE"
+		exit ;;
+	    authenticamd | genuineintel | EM64T)
+		echo x86_64-unknown-interix"$UNAME_RELEASE"
+		exit ;;
+	    IA64)
+		echo ia64-unknown-interix"$UNAME_RELEASE"
+		exit ;;
+	esac ;;
+    i*:UWIN*:*)
+	echo "$UNAME_MACHINE"-pc-uwin
+	exit ;;
+    amd64:CYGWIN*:*:* | x86_64:CYGWIN*:*:*)
+	echo x86_64-pc-cygwin
+	exit ;;
+    prep*:SunOS:5.*:*)
+	echo powerpcle-unknown-solaris2"$(echo "$UNAME_RELEASE"|sed -e 's/[^.]*//')"
+	exit ;;
+    *:GNU:*:*)
+	# the GNU system
+	echo "$(echo "$UNAME_MACHINE"|sed -e 's,[-/].*$,,')-unknown-$LIBC$(echo "$UNAME_RELEASE"|sed -e 's,/.*$,,')"
+	exit ;;
+    *:GNU/*:*:*)
+	# other systems with GNU libc and userland
+	echo "$UNAME_MACHINE-unknown-$(echo "$UNAME_SYSTEM" | sed 's,^[^/]*/,,' | tr "[:upper:]" "[:lower:]")$(echo "$UNAME_RELEASE"|sed -e 's/[-(].*//')-$LIBC"
+	exit ;;
+    *:Minix:*:*)
+	echo "$UNAME_MACHINE"-unknown-minix
+	exit ;;
+    aarch64:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    aarch64_be:Linux:*:*)
+	UNAME_MACHINE=aarch64_be
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    alpha:Linux:*:*)
+	case $(sed -n '/^cpu model/s/^.*: \(.*\)/\1/p' /proc/cpuinfo 2>/dev/null) in
+	  EV5)   UNAME_MACHINE=alphaev5 ;;
+	  EV56)  UNAME_MACHINE=alphaev56 ;;
+	  PCA56) UNAME_MACHINE=alphapca56 ;;
+	  PCA57) UNAME_MACHINE=alphapca56 ;;
+	  EV6)   UNAME_MACHINE=alphaev6 ;;
+	  EV67)  UNAME_MACHINE=alphaev67 ;;
+	  EV68*) UNAME_MACHINE=alphaev68 ;;
+	esac
+	objdump --private-headers /bin/sh | grep -q ld.so.1
+	if test "$?" = 0 ; then LIBC=gnulibc1 ; fi
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    arc:Linux:*:* | arceb:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    arm*:Linux:*:*)
+	set_cc_for_build
+	if echo __ARM_EABI__ | $CC_FOR_BUILD -E - 2>/dev/null \
+	    | grep -q __ARM_EABI__
+	then
+	    echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	else
+	    if echo __ARM_PCS_VFP | $CC_FOR_BUILD -E - 2>/dev/null \
+		| grep -q __ARM_PCS_VFP
+	    then
+		echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"eabi
+	    else
+		echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"eabihf
+	    fi
+	fi
+	exit ;;
+    avr32*:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    cris:Linux:*:*)
+	echo "$UNAME_MACHINE"-axis-linux-"$LIBC"
+	exit ;;
+    crisv32:Linux:*:*)
+	echo "$UNAME_MACHINE"-axis-linux-"$LIBC"
+	exit ;;
+    e2k:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    frv:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    hexagon:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    i*86:Linux:*:*)
+	echo "$UNAME_MACHINE"-pc-linux-"$LIBC"
+	exit ;;
+    ia64:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    k1om:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    loongarch32:Linux:*:* | loongarch64:Linux:*:* | loongarchx32:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    m32r*:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    m68*:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    mips:Linux:*:* | mips64:Linux:*:*)
+	set_cc_for_build
+	IS_GLIBC=0
+	test x"${LIBC}" = xgnu && IS_GLIBC=1
+	sed 's/^	//' << EOF > "$dummy.c"
+	#undef CPU
+	#undef mips
+	#undef mipsel
+	#undef mips64
+	#undef mips64el
+	#if ${IS_GLIBC} && defined(_ABI64)
+	LIBCABI=gnuabi64
+	#else
+	#if ${IS_GLIBC} && defined(_ABIN32)
+	LIBCABI=gnuabin32
+	#else
+	LIBCABI=${LIBC}
+	#endif
+	#endif
+
+	#if ${IS_GLIBC} && defined(__mips64) && defined(__mips_isa_rev) && __mips_isa_rev>=6
+	CPU=mipsisa64r6
+	#else
+	#if ${IS_GLIBC} && !defined(__mips64) && defined(__mips_isa_rev) && __mips_isa_rev>=6
+	CPU=mipsisa32r6
+	#else
+	#if defined(__mips64)
+	CPU=mips64
+	#else
+	CPU=mips
+	#endif
+	#endif
+	#endif
+
+	#if defined(__MIPSEL__) || defined(__MIPSEL) || defined(_MIPSEL) || defined(MIPSEL)
+	MIPS_ENDIAN=el
+	#else
+	#if defined(__MIPSEB__) || defined(__MIPSEB) || defined(_MIPSEB) || defined(MIPSEB)
+	MIPS_ENDIAN=
+	#else
+	MIPS_ENDIAN=
+	#endif
+	#endif
+EOF
+	eval "$($CC_FOR_BUILD -E "$dummy.c" 2>/dev/null | grep '^CPU\|^MIPS_ENDIAN\|^LIBCABI')"
+	test "x$CPU" != x && { echo "$CPU${MIPS_ENDIAN}-unknown-linux-$LIBCABI"; exit; }
+	;;
+    mips64el:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    openrisc*:Linux:*:*)
+	echo or1k-unknown-linux-"$LIBC"
+	exit ;;
+    or32:Linux:*:* | or1k*:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    padre:Linux:*:*)
+	echo sparc-unknown-linux-"$LIBC"
+	exit ;;
+    parisc64:Linux:*:* | hppa64:Linux:*:*)
+	echo hppa64-unknown-linux-"$LIBC"
+	exit ;;
+    parisc:Linux:*:* | hppa:Linux:*:*)
+	# Look for CPU level
+	case $(grep '^cpu[^a-z]*:' /proc/cpuinfo 2>/dev/null | cut -d' ' -f2) in
+	  PA7*) echo hppa1.1-unknown-linux-"$LIBC" ;;
+	  PA8*) echo hppa2.0-unknown-linux-"$LIBC" ;;
+	  *)    echo hppa-unknown-linux-"$LIBC" ;;
+	esac
+	exit ;;
+    ppc64:Linux:*:*)
+	echo powerpc64-unknown-linux-"$LIBC"
+	exit ;;
+    ppc:Linux:*:*)
+	echo powerpc-unknown-linux-"$LIBC"
+	exit ;;
+    ppc64le:Linux:*:*)
+	echo powerpc64le-unknown-linux-"$LIBC"
+	exit ;;
+    ppcle:Linux:*:*)
+	echo powerpcle-unknown-linux-"$LIBC"
+	exit ;;
+    riscv32:Linux:*:* | riscv32be:Linux:*:* | riscv64:Linux:*:* | riscv64be:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    s390:Linux:*:* | s390x:Linux:*:*)
+	echo "$UNAME_MACHINE"-ibm-linux-"$LIBC"
+	exit ;;
+    sh64*:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    sh*:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    sparc:Linux:*:* | sparc64:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    tile*:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    vax:Linux:*:*)
+	echo "$UNAME_MACHINE"-dec-linux-"$LIBC"
+	exit ;;
+    x86_64:Linux:*:*)
+	set_cc_for_build
+	LIBCABI=$LIBC
+	if test "$CC_FOR_BUILD" != no_compiler_found; then
+	    if (echo '#ifdef __ILP32__'; echo IS_X32; echo '#endif') | \
+		(CCOPTS="" $CC_FOR_BUILD -E - 2>/dev/null) | \
+		grep IS_X32 >/dev/null
+	    then
+		LIBCABI="$LIBC"x32
+	    fi
+	fi
+	echo "$UNAME_MACHINE"-pc-linux-"$LIBCABI"
+	exit ;;
+    xtensa*:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    i*86:DYNIX/ptx:4*:*)
+	# ptx 4.0 does uname -s correctly, with DYNIX/ptx in there.
+	# earlier versions are messed up and put the nodename in both
+	# sysname and nodename.
+	echo i386-sequent-sysv4
+	exit ;;
+    i*86:UNIX_SV:4.2MP:2.*)
+	# Unixware is an offshoot of SVR4, but it has its own version
+	# number series starting with 2...
+	# I am not positive that other SVR4 systems won't match this,
+	# I just have to hope.  -- rms.
+	# Use sysv4.2uw... so that sysv4* matches it.
+	echo "$UNAME_MACHINE"-pc-sysv4.2uw"$UNAME_VERSION"
+	exit ;;
+    i*86:OS/2:*:*)
+	# If we were able to find `uname', then EMX Unix compatibility
+	# is probably installed.
+	echo "$UNAME_MACHINE"-pc-os2-emx
+	exit ;;
+    i*86:XTS-300:*:STOP)
+	echo "$UNAME_MACHINE"-unknown-stop
+	exit ;;
+    i*86:atheos:*:*)
+	echo "$UNAME_MACHINE"-unknown-atheos
+	exit ;;
+    i*86:syllable:*:*)
+	echo "$UNAME_MACHINE"-pc-syllable
+	exit ;;
+    i*86:LynxOS:2.*:* | i*86:LynxOS:3.[01]*:* | i*86:LynxOS:4.[02]*:*)
+	echo i386-unknown-lynxos"$UNAME_RELEASE"
+	exit ;;
+    i*86:*DOS:*:*)
+	echo "$UNAME_MACHINE"-pc-msdosdjgpp
+	exit ;;
+    i*86:*:4.*:*)
+	UNAME_REL=$(echo "$UNAME_RELEASE" | sed 's/\/MP$//')
+	if grep Novell /usr/include/link.h >/dev/null 2>/dev/null; then
+		echo "$UNAME_MACHINE"-univel-sysv"$UNAME_REL"
+	else
+		echo "$UNAME_MACHINE"-pc-sysv"$UNAME_REL"
+	fi
+	exit ;;
+    i*86:*:5:[678]*)
+	# UnixWare 7.x, OpenUNIX and OpenServer 6.
+	case $(/bin/uname -X | grep "^Machine") in
+	    *486*)	     UNAME_MACHINE=i486 ;;
+	    *Pentium)	     UNAME_MACHINE=i586 ;;
+	    *Pent*|*Celeron) UNAME_MACHINE=i686 ;;
+	esac
+	echo "$UNAME_MACHINE-unknown-sysv${UNAME_RELEASE}${UNAME_SYSTEM}${UNAME_VERSION}"
+	exit ;;
+    i*86:*:3.2:*)
+	if test -f /usr/options/cb.name; then
+		UNAME_REL=$(sed -n 's/.*Version //p' </usr/options/cb.name)
+		echo "$UNAME_MACHINE"-pc-isc"$UNAME_REL"
+	elif /bin/uname -X 2>/dev/null >/dev/null ; then
+		UNAME_REL=$( (/bin/uname -X|grep Release|sed -e 's/.*= //'))
+		(/bin/uname -X|grep i80486 >/dev/null) && UNAME_MACHINE=i486
+		(/bin/uname -X|grep '^Machine.*Pentium' >/dev/null) \
+			&& UNAME_MACHINE=i586
+		(/bin/uname -X|grep '^Machine.*Pent *II' >/dev/null) \
+			&& UNAME_MACHINE=i686
+		(/bin/uname -X|grep '^Machine.*Pentium Pro' >/dev/null) \
+			&& UNAME_MACHINE=i686
+		echo "$UNAME_MACHINE"-pc-sco"$UNAME_REL"
+	else
+		echo "$UNAME_MACHINE"-pc-sysv32
+	fi
+	exit ;;
+    pc:*:*:*)
+	# Left here for compatibility:
+	# uname -m prints for DJGPP always 'pc', but it prints nothing about
+	# the processor, so we play safe by assuming i586.
+	# Note: whatever this is, it MUST be the same as what config.sub
+	# prints for the "djgpp" host, or else GDB configure will decide that
+	# this is a cross-build.
+	echo i586-pc-msdosdjgpp
+	exit ;;
+    Intel:Mach:3*:*)
+	echo i386-pc-mach3
+	exit ;;
+    paragon:*:*:*)
+	echo i860-intel-osf1
+	exit ;;
+    i860:*:4.*:*) # i860-SVR4
+	if grep Stardent /usr/include/sys/uadmin.h >/dev/null 2>&1 ; then
+	  echo i860-stardent-sysv"$UNAME_RELEASE" # Stardent Vistra i860-SVR4
+	else # Add other i860-SVR4 vendors below as they are discovered.
+	  echo i860-unknown-sysv"$UNAME_RELEASE"  # Unknown i860-SVR4
+	fi
+	exit ;;
+    mini*:CTIX:SYS*5:*)
+	# "miniframe"
+	echo m68010-convergent-sysv
+	exit ;;
+    mc68k:UNIX:SYSTEM5:3.51m)
+	echo m68k-convergent-sysv
+	exit ;;
+    M680?0:D-NIX:5.3:*)
+	echo m68k-diab-dnix
+	exit ;;
+    M68*:*:R3V[5678]*:*)
+	test -r /sysV68 && { echo 'm68k-motorola-sysv'; exit; } ;;
+    3[345]??:*:4.0:3.0 | 3[34]??A:*:4.0:3.0 | 3[34]??,*:*:4.0:3.0 | 3[34]??/*:*:4.0:3.0 | 4400:*:4.0:3.0 | 4850:*:4.0:3.0 | SKA40:*:4.0:3.0 | SDS2:*:4.0:3.0 | SHG2:*:4.0:3.0 | S7501*:*:4.0:3.0)
+	OS_REL=''
+	test -r /etc/.relid \
+	&& OS_REL=.$(sed -n 's/[^ ]* [^ ]* \([0-9][0-9]\).*/\1/p' < /etc/.relid)
+	/bin/uname -p 2>/dev/null | grep 86 >/dev/null \
+	  && { echo i486-ncr-sysv4.3"$OS_REL"; exit; }
+	/bin/uname -p 2>/dev/null | /bin/grep entium >/dev/null \
+	  && { echo i586-ncr-sysv4.3"$OS_REL"; exit; } ;;
+    3[34]??:*:4.0:* | 3[34]??,*:*:4.0:*)
+	/bin/uname -p 2>/dev/null | grep 86 >/dev/null \
+	  && { echo i486-ncr-sysv4; exit; } ;;
+    NCR*:*:4.2:* | MPRAS*:*:4.2:*)
+	OS_REL='.3'
+	test -r /etc/.relid \
+	    && OS_REL=.$(sed -n 's/[^ ]* [^ ]* \([0-9][0-9]\).*/\1/p' < /etc/.relid)
+	/bin/uname -p 2>/dev/null | grep 86 >/dev/null \
+	    && { echo i486-ncr-sysv4.3"$OS_REL"; exit; }
+	/bin/uname -p 2>/dev/null | /bin/grep entium >/dev/null \
+	    && { echo i586-ncr-sysv4.3"$OS_REL"; exit; }
+	/bin/uname -p 2>/dev/null | /bin/grep pteron >/dev/null \
+	    && { echo i586-ncr-sysv4.3"$OS_REL"; exit; } ;;
+    m68*:LynxOS:2.*:* | m68*:LynxOS:3.0*:*)
+	echo m68k-unknown-lynxos"$UNAME_RELEASE"
+	exit ;;
+    mc68030:UNIX_System_V:4.*:*)
+	echo m68k-atari-sysv4
+	exit ;;
+    TSUNAMI:LynxOS:2.*:*)
+	echo sparc-unknown-lynxos"$UNAME_RELEASE"
+	exit ;;
+    rs6000:LynxOS:2.*:*)
+	echo rs6000-unknown-lynxos"$UNAME_RELEASE"
+	exit ;;
+    PowerPC:LynxOS:2.*:* | PowerPC:LynxOS:3.[01]*:* | PowerPC:LynxOS:4.[02]*:*)
+	echo powerpc-unknown-lynxos"$UNAME_RELEASE"
+	exit ;;
+    SM[BE]S:UNIX_SV:*:*)
+	echo mips-dde-sysv"$UNAME_RELEASE"
+	exit ;;
+    RM*:ReliantUNIX-*:*:*)
+	echo mips-sni-sysv4
+	exit ;;
+    RM*:SINIX-*:*:*)
+	echo mips-sni-sysv4
+	exit ;;
+    *:SINIX-*:*:*)
+	if uname -p 2>/dev/null >/dev/null ; then
+		UNAME_MACHINE=$( (uname -p) 2>/dev/null)
+		echo "$UNAME_MACHINE"-sni-sysv4
+	else
+		echo ns32k-sni-sysv
+	fi
+	exit ;;
+    PENTIUM:*:4.0*:*)	# Unisys `ClearPath HMP IX 4000' SVR4/MP effort
+			# says <Richard.M.Bartel@ccMail.Census.GOV>
+	echo i586-unisys-sysv4
+	exit ;;
+    *:UNIX_System_V:4*:FTX*)
+	# From Gerald Hewes <hewes@openmarket.com>.
+	# How about differentiating between stratus architectures? -djm
+	echo hppa1.1-stratus-sysv4
+	exit ;;
+    *:*:*:FTX*)
+	# From seanf@swdc.stratus.com.
+	echo i860-stratus-sysv4
+	exit ;;
+    i*86:VOS:*:*)
+	# From Paul.Green@stratus.com.
+	echo "$UNAME_MACHINE"-stratus-vos
+	exit ;;
+    *:VOS:*:*)
+	# From Paul.Green@stratus.com.
+	echo hppa1.1-stratus-vos
+	exit ;;
+    mc68*:A/UX:*:*)
+	echo m68k-apple-aux"$UNAME_RELEASE"
+	exit ;;
+    news*:NEWS-OS:6*:*)
+	echo mips-sony-newsos6
+	exit ;;
+    R[34]000:*System_V*:*:* | R4000:UNIX_SYSV:*:* | R*000:UNIX_SV:*:*)
+	if test -d /usr/nec; then
+		echo mips-nec-sysv"$UNAME_RELEASE"
+	else
+		echo mips-unknown-sysv"$UNAME_RELEASE"
+	fi
+	exit ;;
+    BeBox:BeOS:*:*)	# BeOS running on hardware made by Be, PPC only.
+	echo powerpc-be-beos
+	exit ;;
+    BeMac:BeOS:*:*)	# BeOS running on Mac or Mac clone, PPC only.
+	echo powerpc-apple-beos
+	exit ;;
+    BePC:BeOS:*:*)	# BeOS running on Intel PC compatible.
+	echo i586-pc-beos
+	exit ;;
+    BePC:Haiku:*:*)	# Haiku running on Intel PC compatible.
+	echo i586-pc-haiku
+	exit ;;
+    x86_64:Haiku:*:*)
+	echo x86_64-unknown-haiku
+	exit ;;
+    SX-4:SUPER-UX:*:*)
+	echo sx4-nec-superux"$UNAME_RELEASE"
+	exit ;;
+    SX-5:SUPER-UX:*:*)
+	echo sx5-nec-superux"$UNAME_RELEASE"
+	exit ;;
+    SX-6:SUPER-UX:*:*)
+	echo sx6-nec-superux"$UNAME_RELEASE"
+	exit ;;
+    SX-7:SUPER-UX:*:*)
+	echo sx7-nec-superux"$UNAME_RELEASE"
+	exit ;;
+    SX-8:SUPER-UX:*:*)
+	echo sx8-nec-superux"$UNAME_RELEASE"
+	exit ;;
+    SX-8R:SUPER-UX:*:*)
+	echo sx8r-nec-superux"$UNAME_RELEASE"
+	exit ;;
+    SX-ACE:SUPER-UX:*:*)
+	echo sxace-nec-superux"$UNAME_RELEASE"
+	exit ;;
+    Power*:Rhapsody:*:*)
+	echo powerpc-apple-rhapsody"$UNAME_RELEASE"
+	exit ;;
+    *:Rhapsody:*:*)
+	echo "$UNAME_MACHINE"-apple-rhapsody"$UNAME_RELEASE"
+	exit ;;
+    arm64:Darwin:*:*)
+	echo aarch64-apple-darwin"$UNAME_RELEASE"
+	exit ;;
+    *:Darwin:*:*)
+	UNAME_PROCESSOR=$(uname -p)
+	case $UNAME_PROCESSOR in
+	    unknown) UNAME_PROCESSOR=powerpc ;;
+	esac
+	if command -v xcode-select > /dev/null 2> /dev/null && \
+		! xcode-select --print-path > /dev/null 2> /dev/null ; then
+	    # Avoid executing cc if there is no toolchain installed as
+	    # cc will be a stub that puts up a graphical alert
+	    # prompting the user to install developer tools.
+	    CC_FOR_BUILD=no_compiler_found
+	else
+	    set_cc_for_build
+	fi
+	if test "$CC_FOR_BUILD" != no_compiler_found; then
+	    if (echo '#ifdef __LP64__'; echo IS_64BIT_ARCH; echo '#endif') | \
+		   (CCOPTS="" $CC_FOR_BUILD -E - 2>/dev/null) | \
+		   grep IS_64BIT_ARCH >/dev/null
+	    then
+		case $UNAME_PROCESSOR in
+		    i386) UNAME_PROCESSOR=x86_64 ;;
+		    powerpc) UNAME_PROCESSOR=powerpc64 ;;
+		esac
+	    fi
+	    # On 10.4-10.6 one might compile for PowerPC via gcc -arch ppc
+	    if (echo '#ifdef __POWERPC__'; echo IS_PPC; echo '#endif') | \
+		   (CCOPTS="" $CC_FOR_BUILD -E - 2>/dev/null) | \
+		   grep IS_PPC >/dev/null
+	    then
+		UNAME_PROCESSOR=powerpc
+	    fi
+	elif test "$UNAME_PROCESSOR" = i386 ; then
+	    # uname -m returns i386 or x86_64
+	    UNAME_PROCESSOR=$UNAME_MACHINE
+	fi
+	echo "$UNAME_PROCESSOR"-apple-darwin"$UNAME_RELEASE"
+	exit ;;
+    *:procnto*:*:* | *:QNX:[0123456789]*:*)
+	UNAME_PROCESSOR=$(uname -p)
+	if test "$UNAME_PROCESSOR" = x86; then
+		UNAME_PROCESSOR=i386
+		UNAME_MACHINE=pc
+	fi
+	echo "$UNAME_PROCESSOR"-"$UNAME_MACHINE"-nto-qnx"$UNAME_RELEASE"
+	exit ;;
+    *:QNX:*:4*)
+	echo i386-pc-qnx
+	exit ;;
+    NEO-*:NONSTOP_KERNEL:*:*)
+	echo neo-tandem-nsk"$UNAME_RELEASE"
+	exit ;;
+    NSE-*:NONSTOP_KERNEL:*:*)
+	echo nse-tandem-nsk"$UNAME_RELEASE"
+	exit ;;
+    NSR-*:NONSTOP_KERNEL:*:*)
+	echo nsr-tandem-nsk"$UNAME_RELEASE"
+	exit ;;
+    NSV-*:NONSTOP_KERNEL:*:*)
+	echo nsv-tandem-nsk"$UNAME_RELEASE"
+	exit ;;
+    NSX-*:NONSTOP_KERNEL:*:*)
+	echo nsx-tandem-nsk"$UNAME_RELEASE"
+	exit ;;
+    *:NonStop-UX:*:*)
+	echo mips-compaq-nonstopux
+	exit ;;
+    BS2000:POSIX*:*:*)
+	echo bs2000-siemens-sysv
+	exit ;;
+    DS/*:UNIX_System_V:*:*)
+	echo "$UNAME_MACHINE"-"$UNAME_SYSTEM"-"$UNAME_RELEASE"
+	exit ;;
+    *:Plan9:*:*)
+	# "uname -m" is not consistent, so use $cputype instead. 386
+	# is converted to i386 for consistency with other x86
+	# operating systems.
+	# shellcheck disable=SC2154
+	if test "$cputype" = 386; then
+	    UNAME_MACHINE=i386
+	else
+	    UNAME_MACHINE="$cputype"
+	fi
+	echo "$UNAME_MACHINE"-unknown-plan9
+	exit ;;
+    *:TOPS-10:*:*)
+	echo pdp10-unknown-tops10
+	exit ;;
+    *:TENEX:*:*)
+	echo pdp10-unknown-tenex
+	exit ;;
+    KS10:TOPS-20:*:* | KL10:TOPS-20:*:* | TYPE4:TOPS-20:*:*)
+	echo pdp10-dec-tops20
+	exit ;;
+    XKL-1:TOPS-20:*:* | TYPE5:TOPS-20:*:*)
+	echo pdp10-xkl-tops20
+	exit ;;
+    *:TOPS-20:*:*)
+	echo pdp10-unknown-tops20
+	exit ;;
+    *:ITS:*:*)
+	echo pdp10-unknown-its
+	exit ;;
+    SEI:*:*:SEIUX)
+	echo mips-sei-seiux"$UNAME_RELEASE"
+	exit ;;
+    *:DragonFly:*:*)
+	echo "$UNAME_MACHINE"-unknown-dragonfly"$(echo "$UNAME_RELEASE"|sed -e 's/[-(].*//')"
+	exit ;;
+    *:*VMS:*:*)
+	UNAME_MACHINE=$( (uname -p) 2>/dev/null)
+	case "$UNAME_MACHINE" in
+	    A*) echo alpha-dec-vms ; exit ;;
+	    I*) echo ia64-dec-vms ; exit ;;
+	    V*) echo vax-dec-vms ; exit ;;
+	esac ;;
+    *:XENIX:*:SysV)
+	echo i386-pc-xenix
+	exit ;;
+    i*86:skyos:*:*)
+	echo "$UNAME_MACHINE"-pc-skyos"$(echo "$UNAME_RELEASE" | sed -e 's/ .*$//')"
+	exit ;;
+    i*86:rdos:*:*)
+	echo "$UNAME_MACHINE"-pc-rdos
+	exit ;;
+    *:AROS:*:*)
+	echo "$UNAME_MACHINE"-unknown-aros
+	exit ;;
+    x86_64:VMkernel:*:*)
+	echo "$UNAME_MACHINE"-unknown-esx
+	exit ;;
+    amd64:Isilon\ OneFS:*:*)
+	echo x86_64-unknown-onefs
+	exit ;;
+    *:Unleashed:*:*)
+	echo "$UNAME_MACHINE"-unknown-unleashed"$UNAME_RELEASE"
+	exit ;;
+esac
+
+# No uname command or uname output not recognized.
+set_cc_for_build
+cat > "$dummy.c" <<EOF
+#ifdef _SEQUENT_
+#include <sys/types.h>
+#include <sys/utsname.h>
+#endif
+#if defined(ultrix) || defined(_ultrix) || defined(__ultrix) || defined(__ultrix__)
+#if defined (vax) || defined (__vax) || defined (__vax__) || defined(mips) || defined(__mips) || defined(__mips__) || defined(MIPS) || defined(__MIPS__)
+#include <signal.h>
+#if defined(_SIZE_T_) || defined(SIGLOST)
+#include <sys/utsname.h>
+#endif
+#endif
+#endif
+main ()
+{
+#if defined (sony)
+#if defined (MIPSEB)
+  /* BFD wants "bsd" instead of "newsos".  Perhaps BFD should be changed,
+     I don't know....  */
+  printf ("mips-sony-bsd\n"); exit (0);
+#else
+#include <sys/param.h>
+  printf ("m68k-sony-newsos%s\n",
+#ifdef NEWSOS4
+  "4"
+#else
+  ""
+#endif
+  ); exit (0);
+#endif
+#endif
+
+#if defined (NeXT)
+#if !defined (__ARCHITECTURE__)
+#define __ARCHITECTURE__ "m68k"
+#endif
+  int version;
+  version=$( (hostinfo | sed -n 's/.*NeXT Mach \([0-9]*\).*/\1/p') 2>/dev/null);
+  if (version < 4)
+    printf ("%s-next-nextstep%d\n", __ARCHITECTURE__, version);
+  else
+    printf ("%s-next-openstep%d\n", __ARCHITECTURE__, version);
+  exit (0);
+#endif
+
+#if defined (MULTIMAX) || defined (n16)
+#if defined (UMAXV)
+  printf ("ns32k-encore-sysv\n"); exit (0);
+#else
+#if defined (CMU)
+  printf ("ns32k-encore-mach\n"); exit (0);
+#else
+  printf ("ns32k-encore-bsd\n"); exit (0);
+#endif
+#endif
+#endif
+
+#if defined (__386BSD__)
+  printf ("i386-pc-bsd\n"); exit (0);
+#endif
+
+#if defined (sequent)
+#if defined (i386)
+  printf ("i386-sequent-dynix\n"); exit (0);
+#endif
+#if defined (ns32000)
+  printf ("ns32k-sequent-dynix\n"); exit (0);
+#endif
+#endif
+
+#if defined (_SEQUENT_)
+  struct utsname un;
+
+  uname(&un);
+  if (strncmp(un.version, "V2", 2) == 0) {
+    printf ("i386-sequent-ptx2\n"); exit (0);
+  }
+  if (strncmp(un.version, "V1", 2) == 0) { /* XXX is V1 correct? */
+    printf ("i386-sequent-ptx1\n"); exit (0);
+  }
+  printf ("i386-sequent-ptx\n"); exit (0);
+#endif
+
+#if defined (vax)
+#if !defined (ultrix)
+#include <sys/param.h>
+#if defined (BSD)
+#if BSD == 43
+  printf ("vax-dec-bsd4.3\n"); exit (0);
+#else
+#if BSD == 199006
+  printf ("vax-dec-bsd4.3reno\n"); exit (0);
+#else
+  printf ("vax-dec-bsd\n"); exit (0);
+#endif
+#endif
+#else
+  printf ("vax-dec-bsd\n"); exit (0);
+#endif
+#else
+#if defined(_SIZE_T_) || defined(SIGLOST)
+  struct utsname un;
+  uname (&un);
+  printf ("vax-dec-ultrix%s\n", un.release); exit (0);
+#else
+  printf ("vax-dec-ultrix\n"); exit (0);
+#endif
+#endif
+#endif
+#if defined(ultrix) || defined(_ultrix) || defined(__ultrix) || defined(__ultrix__)
+#if defined(mips) || defined(__mips) || defined(__mips__) || defined(MIPS) || defined(__MIPS__)
+#if defined(_SIZE_T_) || defined(SIGLOST)
+  struct utsname *un;
+  uname (&un);
+  printf ("mips-dec-ultrix%s\n", un.release); exit (0);
+#else
+  printf ("mips-dec-ultrix\n"); exit (0);
+#endif
+#endif
+#endif
+
+#if defined (alliant) && defined (i860)
+  printf ("i860-alliant-bsd\n"); exit (0);
+#endif
+
+  exit (1);
+}
+EOF
+
+$CC_FOR_BUILD -o "$dummy" "$dummy.c" 2>/dev/null && SYSTEM_NAME=$($dummy) &&
+	{ echo "$SYSTEM_NAME"; exit; }
+
+# Apollos put the system type in the environment.
+test -d /usr/apollo && { echo "$ISP-apollo-$SYSTYPE"; exit; }
+
+echo "$0: unable to guess system type" >&2
+
+case "$UNAME_MACHINE:$UNAME_SYSTEM" in
+    mips:Linux | mips64:Linux)
+	# If we got here on MIPS GNU/Linux, output extra information.
+	cat >&2 <<EOF
+
+NOTE: MIPS GNU/Linux systems require a C compiler to fully recognize
+the system type. Please install a C compiler and try again.
+EOF
+	;;
+esac
+
+cat >&2 <<EOF
+
+This script (version $timestamp), has failed to recognize the
+operating system you are using. If your script is old, overwrite *all*
+copies of config.guess and config.sub with the latest versions from:
+
+  https://git.savannah.gnu.org/cgit/config.git/plain/config.guess
+and
+  https://git.savannah.gnu.org/cgit/config.git/plain/config.sub
+EOF
+
+year=$(echo $timestamp | sed 's,-.*,,')
+# shellcheck disable=SC2003
+if test "$(expr "$(date +%Y)" - "$year")" -lt 3 ; then
+   cat >&2 <<EOF
+
+If $0 has already been updated, send the following data and any
+information you think might be pertinent to config-patches@gnu.org to
+provide the necessary information to handle your system.
+
+config.guess timestamp = $timestamp
+
+uname -m = $( (uname -m) 2>/dev/null || echo unknown)
+uname -r = $( (uname -r) 2>/dev/null || echo unknown)
+uname -s = $( (uname -s) 2>/dev/null || echo unknown)
+uname -v = $( (uname -v) 2>/dev/null || echo unknown)
+
+/usr/bin/uname -p = $( (/usr/bin/uname -p) 2>/dev/null)
+/bin/uname -X     = $( (/bin/uname -X) 2>/dev/null)
+
+hostinfo               = $( (hostinfo) 2>/dev/null)
+/bin/universe          = $( (/bin/universe) 2>/dev/null)
+/usr/bin/arch -k       = $( (/usr/bin/arch -k) 2>/dev/null)
+/bin/arch              = $( (/bin/arch) 2>/dev/null)
+/usr/bin/oslevel       = $( (/usr/bin/oslevel) 2>/dev/null)
+/usr/convex/getsysinfo = $( (/usr/convex/getsysinfo) 2>/dev/null)
+
+UNAME_MACHINE = "$UNAME_MACHINE"
+UNAME_RELEASE = "$UNAME_RELEASE"
+UNAME_SYSTEM  = "$UNAME_SYSTEM"
+UNAME_VERSION = "$UNAME_VERSION"
+EOF
+fi
+
+exit 1
+
+# Local variables:
+# eval: (add-hook 'before-save-hook 'time-stamp)
+# time-stamp-start: "timestamp='"
+# time-stamp-format: "%:y-%02m-%02d"
+# time-stamp-end: "'"
+# End:
diff --git a/recipes/clustalo/config.sub b/recipes/clustalo/config.sub
new file mode 100644
index 0000000000000..38f3d037a785f
--- /dev/null
+++ b/recipes/clustalo/config.sub
@@ -0,0 +1,1885 @@
+#! /bin/sh
+# Configuration validation subroutine script.
+#   Copyright 1992-2021 Free Software Foundation, Inc.
+
+# shellcheck disable=SC2006,SC2268 # see below for rationale
+
+timestamp='2021-10-27'
+
+# This file is free software; you can redistribute it and/or modify it
+# under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+# General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, see <https://www.gnu.org/licenses/>.
+#
+# As a special exception to the GNU General Public License, if you
+# distribute this file as part of a program that contains a
+# configuration script generated by Autoconf, you may include it under
+# the same distribution terms that you use for the rest of that
+# program.  This Exception is an additional permission under section 7
+# of the GNU General Public License, version 3 ("GPLv3").
+
+
+# Please send patches to <config-patches@gnu.org>.
+#
+# Configuration subroutine to validate and canonicalize a configuration type.
+# Supply the specified configuration type as an argument.
+# If it is invalid, we print an error message on stderr and exit with code 1.
+# Otherwise, we print the canonical config type on stdout and succeed.
+
+# You can get the latest version of this script from:
+# https://git.savannah.gnu.org/cgit/config.git/plain/config.sub
+
+# This file is supposed to be the same for all GNU packages
+# and recognize all the CPU types, system types and aliases
+# that are meaningful with *any* GNU software.
+# Each package is responsible for reporting which valid configurations
+# it does not support.  The user should be able to distinguish
+# a failure to support a valid configuration from a meaningless
+# configuration.
+
+# The goal of this file is to map all the various variations of a given
+# machine specification into a single specification in the form:
+#	CPU_TYPE-MANUFACTURER-OPERATING_SYSTEM
+# or in some cases, the newer four-part form:
+#	CPU_TYPE-MANUFACTURER-KERNEL-OPERATING_SYSTEM
+# It is wrong to echo any other type of specification.
+
+# The "shellcheck disable" line above the timestamp inhibits complaints
+# about features and limitations of the classic Bourne shell that were
+# superseded or lifted in POSIX.  However, this script identifies a wide
+# variety of pre-POSIX systems that do not have POSIX shells at all, and
+# even some reasonably current systems (Solaris 10 as case-in-point) still
+# have a pre-POSIX /bin/sh.
+
+me=`echo "$0" | sed -e 's,.*/,,'`
+
+usage="\
+Usage: $0 [OPTION] CPU-MFR-OPSYS or ALIAS
+
+Canonicalize a configuration name.
+
+Options:
+  -h, --help         print this help, then exit
+  -t, --time-stamp   print date of last modification, then exit
+  -v, --version      print version number, then exit
+
+Report bugs and patches to <config-patches@gnu.org>."
+
+version="\
+GNU config.sub ($timestamp)
+
+Copyright 1992-2021 Free Software Foundation, Inc.
+
+This is free software; see the source for copying conditions.  There is NO
+warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE."
+
+help="
+Try \`$me --help' for more information."
+
+# Parse command line
+while test $# -gt 0 ; do
+  case $1 in
+    --time-stamp | --time* | -t )
+       echo "$timestamp" ; exit ;;
+    --version | -v )
+       echo "$version" ; exit ;;
+    --help | --h* | -h )
+       echo "$usage"; exit ;;
+    -- )     # Stop option processing
+       shift; break ;;
+    - )	# Use stdin as input.
+       break ;;
+    -* )
+       echo "$me: invalid option $1$help" >&2
+       exit 1 ;;
+
+    *local*)
+       # First pass through any local machine types.
+       echo "$1"
+       exit ;;
+
+    * )
+       break ;;
+  esac
+done
+
+case $# in
+ 0) echo "$me: missing argument$help" >&2
+    exit 1;;
+ 1) ;;
+ *) echo "$me: too many arguments$help" >&2
+    exit 1;;
+esac
+
+# Split fields of configuration type
+# shellcheck disable=SC2162
+saved_IFS=$IFS
+IFS="-" read field1 field2 field3 field4 <<EOF
+$1
+EOF
+IFS=$saved_IFS
+
+# Separate into logical components for further validation
+case $1 in
+	*-*-*-*-*)
+		echo Invalid configuration \`"$1"\': more than four components >&2
+		exit 1
+		;;
+	*-*-*-*)
+		basic_machine=$field1-$field2
+		basic_os=$field3-$field4
+		;;
+	*-*-*)
+		# Ambiguous whether COMPANY is present, or skipped and KERNEL-OS is two
+		# parts
+		maybe_os=$field2-$field3
+		case $maybe_os in
+			nto-qnx* | linux-* | uclinux-uclibc* \
+			| uclinux-gnu* | kfreebsd*-gnu* | knetbsd*-gnu* | netbsd*-gnu* \
+			| netbsd*-eabi* | kopensolaris*-gnu* | cloudabi*-eabi* \
+			| storm-chaos* | os2-emx* | rtmk-nova*)
+				basic_machine=$field1
+				basic_os=$maybe_os
+				;;
+			android-linux)
+				basic_machine=$field1-unknown
+				basic_os=linux-android
+				;;
+			*)
+				basic_machine=$field1-$field2
+				basic_os=$field3
+				;;
+		esac
+		;;
+	*-*)
+		# A lone config we happen to match not fitting any pattern
+		case $field1-$field2 in
+			decstation-3100)
+				basic_machine=mips-dec
+				basic_os=
+				;;
+			*-*)
+				# Second component is usually, but not always the OS
+				case $field2 in
+					# Prevent following clause from handling this valid os
+					sun*os*)
+						basic_machine=$field1
+						basic_os=$field2
+						;;
+					zephyr*)
+						basic_machine=$field1-unknown
+						basic_os=$field2
+						;;
+					# Manufacturers
+					dec* | mips* | sequent* | encore* | pc533* | sgi* | sony* \
+					| att* | 7300* | 3300* | delta* | motorola* | sun[234]* \
+					| unicom* | ibm* | next | hp | isi* | apollo | altos* \
+					| convergent* | ncr* | news | 32* | 3600* | 3100* \
+					| hitachi* | c[123]* | convex* | sun | crds | omron* | dg \
+					| ultra | tti* | harris | dolphin | highlevel | gould \
+					| cbm | ns | masscomp | apple | axis | knuth | cray \
+					| microblaze* | sim | cisco \
+					| oki | wec | wrs | winbond)
+						basic_machine=$field1-$field2
+						basic_os=
+						;;
+					*)
+						basic_machine=$field1
+						basic_os=$field2
+						;;
+				esac
+			;;
+		esac
+		;;
+	*)
+		# Convert single-component short-hands not valid as part of
+		# multi-component configurations.
+		case $field1 in
+			386bsd)
+				basic_machine=i386-pc
+				basic_os=bsd
+				;;
+			a29khif)
+				basic_machine=a29k-amd
+				basic_os=udi
+				;;
+			adobe68k)
+				basic_machine=m68010-adobe
+				basic_os=scout
+				;;
+			alliant)
+				basic_machine=fx80-alliant
+				basic_os=
+				;;
+			altos | altos3068)
+				basic_machine=m68k-altos
+				basic_os=
+				;;
+			am29k)
+				basic_machine=a29k-none
+				basic_os=bsd
+				;;
+			amdahl)
+				basic_machine=580-amdahl
+				basic_os=sysv
+				;;
+			amiga)
+				basic_machine=m68k-unknown
+				basic_os=
+				;;
+			amigaos | amigados)
+				basic_machine=m68k-unknown
+				basic_os=amigaos
+				;;
+			amigaunix | amix)
+				basic_machine=m68k-unknown
+				basic_os=sysv4
+				;;
+			apollo68)
+				basic_machine=m68k-apollo
+				basic_os=sysv
+				;;
+			apollo68bsd)
+				basic_machine=m68k-apollo
+				basic_os=bsd
+				;;
+			aros)
+				basic_machine=i386-pc
+				basic_os=aros
+				;;
+			aux)
+				basic_machine=m68k-apple
+				basic_os=aux
+				;;
+			balance)
+				basic_machine=ns32k-sequent
+				basic_os=dynix
+				;;
+			blackfin)
+				basic_machine=bfin-unknown
+				basic_os=linux
+				;;
+			cegcc)
+				basic_machine=arm-unknown
+				basic_os=cegcc
+				;;
+			convex-c1)
+				basic_machine=c1-convex
+				basic_os=bsd
+				;;
+			convex-c2)
+				basic_machine=c2-convex
+				basic_os=bsd
+				;;
+			convex-c32)
+				basic_machine=c32-convex
+				basic_os=bsd
+				;;
+			convex-c34)
+				basic_machine=c34-convex
+				basic_os=bsd
+				;;
+			convex-c38)
+				basic_machine=c38-convex
+				basic_os=bsd
+				;;
+			cray)
+				basic_machine=j90-cray
+				basic_os=unicos
+				;;
+			crds | unos)
+				basic_machine=m68k-crds
+				basic_os=
+				;;
+			da30)
+				basic_machine=m68k-da30
+				basic_os=
+				;;
+			decstation | pmax | pmin | dec3100 | decstatn)
+				basic_machine=mips-dec
+				basic_os=
+				;;
+			delta88)
+				basic_machine=m88k-motorola
+				basic_os=sysv3
+				;;
+			dicos)
+				basic_machine=i686-pc
+				basic_os=dicos
+				;;
+			djgpp)
+				basic_machine=i586-pc
+				basic_os=msdosdjgpp
+				;;
+			ebmon29k)
+				basic_machine=a29k-amd
+				basic_os=ebmon
+				;;
+			es1800 | OSE68k | ose68k | ose | OSE)
+				basic_machine=m68k-ericsson
+				basic_os=ose
+				;;
+			gmicro)
+				basic_machine=tron-gmicro
+				basic_os=sysv
+				;;
+			go32)
+				basic_machine=i386-pc
+				basic_os=go32
+				;;
+			h8300hms)
+				basic_machine=h8300-hitachi
+				basic_os=hms
+				;;
+			h8300xray)
+				basic_machine=h8300-hitachi
+				basic_os=xray
+				;;
+			h8500hms)
+				basic_machine=h8500-hitachi
+				basic_os=hms
+				;;
+			harris)
+				basic_machine=m88k-harris
+				basic_os=sysv3
+				;;
+			hp300 | hp300hpux)
+				basic_machine=m68k-hp
+				basic_os=hpux
+				;;
+			hp300bsd)
+				basic_machine=m68k-hp
+				basic_os=bsd
+				;;
+			hppaosf)
+				basic_machine=hppa1.1-hp
+				basic_os=osf
+				;;
+			hppro)
+				basic_machine=hppa1.1-hp
+				basic_os=proelf
+				;;
+			i386mach)
+				basic_machine=i386-mach
+				basic_os=mach
+				;;
+			isi68 | isi)
+				basic_machine=m68k-isi
+				basic_os=sysv
+				;;
+			m68knommu)
+				basic_machine=m68k-unknown
+				basic_os=linux
+				;;
+			magnum | m3230)
+				basic_machine=mips-mips
+				basic_os=sysv
+				;;
+			merlin)
+				basic_machine=ns32k-utek
+				basic_os=sysv
+				;;
+			mingw64)
+				basic_machine=x86_64-pc
+				basic_os=mingw64
+				;;
+			mingw32)
+				basic_machine=i686-pc
+				basic_os=mingw32
+				;;
+			mingw32ce)
+				basic_machine=arm-unknown
+				basic_os=mingw32ce
+				;;
+			monitor)
+				basic_machine=m68k-rom68k
+				basic_os=coff
+				;;
+			morphos)
+				basic_machine=powerpc-unknown
+				basic_os=morphos
+				;;
+			moxiebox)
+				basic_machine=moxie-unknown
+				basic_os=moxiebox
+				;;
+			msdos)
+				basic_machine=i386-pc
+				basic_os=msdos
+				;;
+			msys)
+				basic_machine=i686-pc
+				basic_os=msys
+				;;
+			mvs)
+				basic_machine=i370-ibm
+				basic_os=mvs
+				;;
+			nacl)
+				basic_machine=le32-unknown
+				basic_os=nacl
+				;;
+			ncr3000)
+				basic_machine=i486-ncr
+				basic_os=sysv4
+				;;
+			netbsd386)
+				basic_machine=i386-pc
+				basic_os=netbsd
+				;;
+			netwinder)
+				basic_machine=armv4l-rebel
+				basic_os=linux
+				;;
+			news | news700 | news800 | news900)
+				basic_machine=m68k-sony
+				basic_os=newsos
+				;;
+			news1000)
+				basic_machine=m68030-sony
+				basic_os=newsos
+				;;
+			necv70)
+				basic_machine=v70-nec
+				basic_os=sysv
+				;;
+			nh3000)
+				basic_machine=m68k-harris
+				basic_os=cxux
+				;;
+			nh[45]000)
+				basic_machine=m88k-harris
+				basic_os=cxux
+				;;
+			nindy960)
+				basic_machine=i960-intel
+				basic_os=nindy
+				;;
+			mon960)
+				basic_machine=i960-intel
+				basic_os=mon960
+				;;
+			nonstopux)
+				basic_machine=mips-compaq
+				basic_os=nonstopux
+				;;
+			os400)
+				basic_machine=powerpc-ibm
+				basic_os=os400
+				;;
+			OSE68000 | ose68000)
+				basic_machine=m68000-ericsson
+				basic_os=ose
+				;;
+			os68k)
+				basic_machine=m68k-none
+				basic_os=os68k
+				;;
+			paragon)
+				basic_machine=i860-intel
+				basic_os=osf
+				;;
+			parisc)
+				basic_machine=hppa-unknown
+				basic_os=linux
+				;;
+			psp)
+				basic_machine=mipsallegrexel-sony
+				basic_os=psp
+				;;
+			pw32)
+				basic_machine=i586-unknown
+				basic_os=pw32
+				;;
+			rdos | rdos64)
+				basic_machine=x86_64-pc
+				basic_os=rdos
+				;;
+			rdos32)
+				basic_machine=i386-pc
+				basic_os=rdos
+				;;
+			rom68k)
+				basic_machine=m68k-rom68k
+				basic_os=coff
+				;;
+			sa29200)
+				basic_machine=a29k-amd
+				basic_os=udi
+				;;
+			sei)
+				basic_machine=mips-sei
+				basic_os=seiux
+				;;
+			sequent)
+				basic_machine=i386-sequent
+				basic_os=
+				;;
+			sps7)
+				basic_machine=m68k-bull
+				basic_os=sysv2
+				;;
+			st2000)
+				basic_machine=m68k-tandem
+				basic_os=
+				;;
+			stratus)
+				basic_machine=i860-stratus
+				basic_os=sysv4
+				;;
+			sun2)
+				basic_machine=m68000-sun
+				basic_os=
+				;;
+			sun2os3)
+				basic_machine=m68000-sun
+				basic_os=sunos3
+				;;
+			sun2os4)
+				basic_machine=m68000-sun
+				basic_os=sunos4
+				;;
+			sun3)
+				basic_machine=m68k-sun
+				basic_os=
+				;;
+			sun3os3)
+				basic_machine=m68k-sun
+				basic_os=sunos3
+				;;
+			sun3os4)
+				basic_machine=m68k-sun
+				basic_os=sunos4
+				;;
+			sun4)
+				basic_machine=sparc-sun
+				basic_os=
+				;;
+			sun4os3)
+				basic_machine=sparc-sun
+				basic_os=sunos3
+				;;
+			sun4os4)
+				basic_machine=sparc-sun
+				basic_os=sunos4
+				;;
+			sun4sol2)
+				basic_machine=sparc-sun
+				basic_os=solaris2
+				;;
+			sun386 | sun386i | roadrunner)
+				basic_machine=i386-sun
+				basic_os=
+				;;
+			sv1)
+				basic_machine=sv1-cray
+				basic_os=unicos
+				;;
+			symmetry)
+				basic_machine=i386-sequent
+				basic_os=dynix
+				;;
+			t3e)
+				basic_machine=alphaev5-cray
+				basic_os=unicos
+				;;
+			t90)
+				basic_machine=t90-cray
+				basic_os=unicos
+				;;
+			toad1)
+				basic_machine=pdp10-xkl
+				basic_os=tops20
+				;;
+			tpf)
+				basic_machine=s390x-ibm
+				basic_os=tpf
+				;;
+			udi29k)
+				basic_machine=a29k-amd
+				basic_os=udi
+				;;
+			ultra3)
+				basic_machine=a29k-nyu
+				basic_os=sym1
+				;;
+			v810 | necv810)
+				basic_machine=v810-nec
+				basic_os=none
+				;;
+			vaxv)
+				basic_machine=vax-dec
+				basic_os=sysv
+				;;
+			vms)
+				basic_machine=vax-dec
+				basic_os=vms
+				;;
+			vsta)
+				basic_machine=i386-pc
+				basic_os=vsta
+				;;
+			vxworks960)
+				basic_machine=i960-wrs
+				basic_os=vxworks
+				;;
+			vxworks68)
+				basic_machine=m68k-wrs
+				basic_os=vxworks
+				;;
+			vxworks29k)
+				basic_machine=a29k-wrs
+				basic_os=vxworks
+				;;
+			xbox)
+				basic_machine=i686-pc
+				basic_os=mingw32
+				;;
+			ymp)
+				basic_machine=ymp-cray
+				basic_os=unicos
+				;;
+			*)
+				basic_machine=$1
+				basic_os=
+				;;
+		esac
+		;;
+esac
+
+# Decode 1-component or ad-hoc basic machines
+case $basic_machine in
+	# Here we handle the default manufacturer of certain CPU types.  It is in
+	# some cases the only manufacturer, in others, it is the most popular.
+	w89k)
+		cpu=hppa1.1
+		vendor=winbond
+		;;
+	op50n)
+		cpu=hppa1.1
+		vendor=oki
+		;;
+	op60c)
+		cpu=hppa1.1
+		vendor=oki
+		;;
+	ibm*)
+		cpu=i370
+		vendor=ibm
+		;;
+	orion105)
+		cpu=clipper
+		vendor=highlevel
+		;;
+	mac | mpw | mac-mpw)
+		cpu=m68k
+		vendor=apple
+		;;
+	pmac | pmac-mpw)
+		cpu=powerpc
+		vendor=apple
+		;;
+
+	# Recognize the various machine names and aliases which stand
+	# for a CPU type and a company and sometimes even an OS.
+	3b1 | 7300 | 7300-att | att-7300 | pc7300 | safari | unixpc)
+		cpu=m68000
+		vendor=att
+		;;
+	3b*)
+		cpu=we32k
+		vendor=att
+		;;
+	bluegene*)
+		cpu=powerpc
+		vendor=ibm
+		basic_os=cnk
+		;;
+	decsystem10* | dec10*)
+		cpu=pdp10
+		vendor=dec
+		basic_os=tops10
+		;;
+	decsystem20* | dec20*)
+		cpu=pdp10
+		vendor=dec
+		basic_os=tops20
+		;;
+	delta | 3300 | motorola-3300 | motorola-delta \
+	      | 3300-motorola | delta-motorola)
+		cpu=m68k
+		vendor=motorola
+		;;
+	dpx2*)
+		cpu=m68k
+		vendor=bull
+		basic_os=sysv3
+		;;
+	encore | umax | mmax)
+		cpu=ns32k
+		vendor=encore
+		;;
+	elxsi)
+		cpu=elxsi
+		vendor=elxsi
+		basic_os=${basic_os:-bsd}
+		;;
+	fx2800)
+		cpu=i860
+		vendor=alliant
+		;;
+	genix)
+		cpu=ns32k
+		vendor=ns
+		;;
+	h3050r* | hiux*)
+		cpu=hppa1.1
+		vendor=hitachi
+		basic_os=hiuxwe2
+		;;
+	hp3k9[0-9][0-9] | hp9[0-9][0-9])
+		cpu=hppa1.0
+		vendor=hp
+		;;
+	hp9k2[0-9][0-9] | hp9k31[0-9])
+		cpu=m68000
+		vendor=hp
+		;;
+	hp9k3[2-9][0-9])
+		cpu=m68k
+		vendor=hp
+		;;
+	hp9k6[0-9][0-9] | hp6[0-9][0-9])
+		cpu=hppa1.0
+		vendor=hp
+		;;
+	hp9k7[0-79][0-9] | hp7[0-79][0-9])
+		cpu=hppa1.1
+		vendor=hp
+		;;
+	hp9k78[0-9] | hp78[0-9])
+		# FIXME: really hppa2.0-hp
+		cpu=hppa1.1
+		vendor=hp
+		;;
+	hp9k8[67]1 | hp8[67]1 | hp9k80[24] | hp80[24] | hp9k8[78]9 | hp8[78]9 | hp9k893 | hp893)
+		# FIXME: really hppa2.0-hp
+		cpu=hppa1.1
+		vendor=hp
+		;;
+	hp9k8[0-9][13679] | hp8[0-9][13679])
+		cpu=hppa1.1
+		vendor=hp
+		;;
+	hp9k8[0-9][0-9] | hp8[0-9][0-9])
+		cpu=hppa1.0
+		vendor=hp
+		;;
+	i*86v32)
+		cpu=`echo "$1" | sed -e 's/86.*/86/'`
+		vendor=pc
+		basic_os=sysv32
+		;;
+	i*86v4*)
+		cpu=`echo "$1" | sed -e 's/86.*/86/'`
+		vendor=pc
+		basic_os=sysv4
+		;;
+	i*86v)
+		cpu=`echo "$1" | sed -e 's/86.*/86/'`
+		vendor=pc
+		basic_os=sysv
+		;;
+	i*86sol2)
+		cpu=`echo "$1" | sed -e 's/86.*/86/'`
+		vendor=pc
+		basic_os=solaris2
+		;;
+	j90 | j90-cray)
+		cpu=j90
+		vendor=cray
+		basic_os=${basic_os:-unicos}
+		;;
+	iris | iris4d)
+		cpu=mips
+		vendor=sgi
+		case $basic_os in
+		    irix*)
+			;;
+		    *)
+			basic_os=irix4
+			;;
+		esac
+		;;
+	miniframe)
+		cpu=m68000
+		vendor=convergent
+		;;
+	*mint | mint[0-9]* | *MiNT | *MiNT[0-9]*)
+		cpu=m68k
+		vendor=atari
+		basic_os=mint
+		;;
+	news-3600 | risc-news)
+		cpu=mips
+		vendor=sony
+		basic_os=newsos
+		;;
+	next | m*-next)
+		cpu=m68k
+		vendor=next
+		case $basic_os in
+		    openstep*)
+		        ;;
+		    nextstep*)
+			;;
+		    ns2*)
+		      basic_os=nextstep2
+			;;
+		    *)
+		      basic_os=nextstep3
+			;;
+		esac
+		;;
+	np1)
+		cpu=np1
+		vendor=gould
+		;;
+	op50n-* | op60c-*)
+		cpu=hppa1.1
+		vendor=oki
+		basic_os=proelf
+		;;
+	pa-hitachi)
+		cpu=hppa1.1
+		vendor=hitachi
+		basic_os=hiuxwe2
+		;;
+	pbd)
+		cpu=sparc
+		vendor=tti
+		;;
+	pbb)
+		cpu=m68k
+		vendor=tti
+		;;
+	pc532)
+		cpu=ns32k
+		vendor=pc532
+		;;
+	pn)
+		cpu=pn
+		vendor=gould
+		;;
+	power)
+		cpu=power
+		vendor=ibm
+		;;
+	ps2)
+		cpu=i386
+		vendor=ibm
+		;;
+	rm[46]00)
+		cpu=mips
+		vendor=siemens
+		;;
+	rtpc | rtpc-*)
+		cpu=romp
+		vendor=ibm
+		;;
+	sde)
+		cpu=mipsisa32
+		vendor=sde
+		basic_os=${basic_os:-elf}
+		;;
+	simso-wrs)
+		cpu=sparclite
+		vendor=wrs
+		basic_os=vxworks
+		;;
+	tower | tower-32)
+		cpu=m68k
+		vendor=ncr
+		;;
+	vpp*|vx|vx-*)
+		cpu=f301
+		vendor=fujitsu
+		;;
+	w65)
+		cpu=w65
+		vendor=wdc
+		;;
+	w89k-*)
+		cpu=hppa1.1
+		vendor=winbond
+		basic_os=proelf
+		;;
+	none)
+		cpu=none
+		vendor=none
+		;;
+	leon|leon[3-9])
+		cpu=sparc
+		vendor=$basic_machine
+		;;
+	leon-*|leon[3-9]-*)
+		cpu=sparc
+		vendor=`echo "$basic_machine" | sed 's/-.*//'`
+		;;
+
+	*-*)
+		# shellcheck disable=SC2162
+		saved_IFS=$IFS
+		IFS="-" read cpu vendor <<EOF
+$basic_machine
+EOF
+		IFS=$saved_IFS
+		;;
+	# We use `pc' rather than `unknown'
+	# because (1) that's what they normally are, and
+	# (2) the word "unknown" tends to confuse beginning users.
+	i*86 | x86_64)
+		cpu=$basic_machine
+		vendor=pc
+		;;
+	# These rules are duplicated from below for sake of the special case above;
+	# i.e. things that normalized to x86 arches should also default to "pc"
+	pc98)
+		cpu=i386
+		vendor=pc
+		;;
+	x64 | amd64)
+		cpu=x86_64
+		vendor=pc
+		;;
+	# Recognize the basic CPU types without company name.
+	*)
+		cpu=$basic_machine
+		vendor=unknown
+		;;
+esac
+
+unset -v basic_machine
+
+# Decode basic machines in the full and proper CPU-Company form.
+case $cpu-$vendor in
+	# Here we handle the default manufacturer of certain CPU types in canonical form. It is in
+	# some cases the only manufacturer, in others, it is the most popular.
+	craynv-unknown)
+		vendor=cray
+		basic_os=${basic_os:-unicosmp}
+		;;
+	c90-unknown | c90-cray)
+		vendor=cray
+		basic_os=${Basic_os:-unicos}
+		;;
+	fx80-unknown)
+		vendor=alliant
+		;;
+	romp-unknown)
+		vendor=ibm
+		;;
+	mmix-unknown)
+		vendor=knuth
+		;;
+	microblaze-unknown | microblazeel-unknown)
+		vendor=xilinx
+		;;
+	rs6000-unknown)
+		vendor=ibm
+		;;
+	vax-unknown)
+		vendor=dec
+		;;
+	pdp11-unknown)
+		vendor=dec
+		;;
+	we32k-unknown)
+		vendor=att
+		;;
+	cydra-unknown)
+		vendor=cydrome
+		;;
+	i370-ibm*)
+		vendor=ibm
+		;;
+	orion-unknown)
+		vendor=highlevel
+		;;
+	xps-unknown | xps100-unknown)
+		cpu=xps100
+		vendor=honeywell
+		;;
+
+	# Here we normalize CPU types with a missing or matching vendor
+	dpx20-unknown | dpx20-bull)
+		cpu=rs6000
+		vendor=bull
+		basic_os=${basic_os:-bosx}
+		;;
+
+	# Here we normalize CPU types irrespective of the vendor
+	amd64-*)
+		cpu=x86_64
+		;;
+	blackfin-*)
+		cpu=bfin
+		basic_os=linux
+		;;
+	c54x-*)
+		cpu=tic54x
+		;;
+	c55x-*)
+		cpu=tic55x
+		;;
+	c6x-*)
+		cpu=tic6x
+		;;
+	e500v[12]-*)
+		cpu=powerpc
+		basic_os=${basic_os}"spe"
+		;;
+	mips3*-*)
+		cpu=mips64
+		;;
+	ms1-*)
+		cpu=mt
+		;;
+	m68knommu-*)
+		cpu=m68k
+		basic_os=linux
+		;;
+	m9s12z-* | m68hcs12z-* | hcs12z-* | s12z-*)
+		cpu=s12z
+		;;
+	openrisc-*)
+		cpu=or32
+		;;
+	parisc-*)
+		cpu=hppa
+		basic_os=linux
+		;;
+	pentium-* | p5-* | k5-* | k6-* | nexgen-* | viac3-*)
+		cpu=i586
+		;;
+	pentiumpro-* | p6-* | 6x86-* | athlon-* | athalon_*-*)
+		cpu=i686
+		;;
+	pentiumii-* | pentium2-* | pentiumiii-* | pentium3-*)
+		cpu=i686
+		;;
+	pentium4-*)
+		cpu=i786
+		;;
+	pc98-*)
+		cpu=i386
+		;;
+	ppc-* | ppcbe-*)
+		cpu=powerpc
+		;;
+	ppcle-* | powerpclittle-*)
+		cpu=powerpcle
+		;;
+	ppc64-*)
+		cpu=powerpc64
+		;;
+	ppc64le-* | powerpc64little-*)
+		cpu=powerpc64le
+		;;
+	sb1-*)
+		cpu=mipsisa64sb1
+		;;
+	sb1el-*)
+		cpu=mipsisa64sb1el
+		;;
+	sh5e[lb]-*)
+		cpu=`echo "$cpu" | sed 's/^\(sh.\)e\(.\)$/\1\2e/'`
+		;;
+	spur-*)
+		cpu=spur
+		;;
+	strongarm-* | thumb-*)
+		cpu=arm
+		;;
+	tx39-*)
+		cpu=mipstx39
+		;;
+	tx39el-*)
+		cpu=mipstx39el
+		;;
+	x64-*)
+		cpu=x86_64
+		;;
+	xscale-* | xscalee[bl]-*)
+		cpu=`echo "$cpu" | sed 's/^xscale/arm/'`
+		;;
+	arm64-*)
+		cpu=aarch64
+		;;
+
+	# Recognize the canonical CPU Types that limit and/or modify the
+	# company names they are paired with.
+	cr16-*)
+		basic_os=${basic_os:-elf}
+		;;
+	crisv32-* | etraxfs*-*)
+		cpu=crisv32
+		vendor=axis
+		;;
+	cris-* | etrax*-*)
+		cpu=cris
+		vendor=axis
+		;;
+	crx-*)
+		basic_os=${basic_os:-elf}
+		;;
+	neo-tandem)
+		cpu=neo
+		vendor=tandem
+		;;
+	nse-tandem)
+		cpu=nse
+		vendor=tandem
+		;;
+	nsr-tandem)
+		cpu=nsr
+		vendor=tandem
+		;;
+	nsv-tandem)
+		cpu=nsv
+		vendor=tandem
+		;;
+	nsx-tandem)
+		cpu=nsx
+		vendor=tandem
+		;;
+	mipsallegrexel-sony)
+		cpu=mipsallegrexel
+		vendor=sony
+		;;
+	tile*-*)
+		basic_os=${basic_os:-linux-gnu}
+		;;
+
+	*)
+		# Recognize the canonical CPU types that are allowed with any
+		# company name.
+		case $cpu in
+			1750a | 580 \
+			| a29k \
+			| aarch64 | aarch64_be \
+			| abacus \
+			| alpha | alphaev[4-8] | alphaev56 | alphaev6[78] \
+			| alpha64 | alpha64ev[4-8] | alpha64ev56 | alpha64ev6[78] \
+			| alphapca5[67] | alpha64pca5[67] \
+			| am33_2.0 \
+			| amdgcn \
+			| arc | arceb | arc32 | arc64 \
+			| arm | arm[lb]e | arme[lb] | armv* \
+			| avr | avr32 \
+			| asmjs \
+			| ba \
+			| be32 | be64 \
+			| bfin | bpf | bs2000 \
+			| c[123]* | c30 | [cjt]90 | c4x \
+			| c8051 | clipper | craynv | csky | cydra \
+			| d10v | d30v | dlx | dsp16xx \
+			| e2k | elxsi | epiphany \
+			| f30[01] | f700 | fido | fr30 | frv | ft32 | fx80 \
+			| h8300 | h8500 \
+			| hppa | hppa1.[01] | hppa2.0 | hppa2.0[nw] | hppa64 \
+			| hexagon \
+			| i370 | i*86 | i860 | i960 | ia16 | ia64 \
+			| ip2k | iq2000 \
+			| k1om \
+			| le32 | le64 \
+			| lm32 \
+			| loongarch32 | loongarch64 | loongarchx32 \
+			| m32c | m32r | m32rle \
+			| m5200 | m68000 | m680[012346]0 | m68360 | m683?2 | m68k \
+			| m6811 | m68hc11 | m6812 | m68hc12 | m68hcs12x \
+			| m88110 | m88k | maxq | mb | mcore | mep | metag \
+			| microblaze | microblazeel \
+			| mips | mipsbe | mipseb | mipsel | mipsle \
+			| mips16 \
+			| mips64 | mips64eb | mips64el \
+			| mips64octeon | mips64octeonel \
+			| mips64orion | mips64orionel \
+			| mips64r5900 | mips64r5900el \
+			| mips64vr | mips64vrel \
+			| mips64vr4100 | mips64vr4100el \
+			| mips64vr4300 | mips64vr4300el \
+			| mips64vr5000 | mips64vr5000el \
+			| mips64vr5900 | mips64vr5900el \
+			| mipsisa32 | mipsisa32el \
+			| mipsisa32r2 | mipsisa32r2el \
+			| mipsisa32r3 | mipsisa32r3el \
+			| mipsisa32r5 | mipsisa32r5el \
+			| mipsisa32r6 | mipsisa32r6el \
+			| mipsisa64 | mipsisa64el \
+			| mipsisa64r2 | mipsisa64r2el \
+			| mipsisa64r3 | mipsisa64r3el \
+			| mipsisa64r5 | mipsisa64r5el \
+			| mipsisa64r6 | mipsisa64r6el \
+			| mipsisa64sb1 | mipsisa64sb1el \
+			| mipsisa64sr71k | mipsisa64sr71kel \
+			| mipsr5900 | mipsr5900el \
+			| mipstx39 | mipstx39el \
+			| mmix \
+			| mn10200 | mn10300 \
+			| moxie \
+			| mt \
+			| msp430 \
+			| nds32 | nds32le | nds32be \
+			| nfp \
+			| nios | nios2 | nios2eb | nios2el \
+			| none | np1 | ns16k | ns32k | nvptx \
+			| open8 \
+			| or1k* \
+			| or32 \
+			| orion \
+			| picochip \
+			| pdp10 | pdp11 | pj | pjl | pn | power \
+			| powerpc | powerpc64 | powerpc64le | powerpcle | powerpcspe \
+			| pru \
+			| pyramid \
+			| riscv | riscv32 | riscv32be | riscv64 | riscv64be \
+			| rl78 | romp | rs6000 | rx \
+			| s390 | s390x \
+			| score \
+			| sh | shl \
+			| sh[1234] | sh[24]a | sh[24]ae[lb] | sh[23]e | she[lb] | sh[lb]e \
+			| sh[1234]e[lb] |  sh[12345][lb]e | sh[23]ele | sh64 | sh64le \
+			| sparc | sparc64 | sparc64b | sparc64v | sparc86x | sparclet \
+			| sparclite \
+			| sparcv8 | sparcv9 | sparcv9b | sparcv9v | sv1 | sx* \
+			| spu \
+			| tahoe \
+			| thumbv7* \
+			| tic30 | tic4x | tic54x | tic55x | tic6x | tic80 \
+			| tron \
+			| ubicom32 \
+			| v70 | v850 | v850e | v850e1 | v850es | v850e2 | v850e2v3 \
+			| vax \
+			| visium \
+			| w65 \
+			| wasm32 | wasm64 \
+			| we32k \
+			| x86 | x86_64 | xc16x | xgate | xps100 \
+			| xstormy16 | xtensa* \
+			| ymp \
+			| z8k | z80)
+				;;
+
+			*)
+				echo Invalid configuration \`"$1"\': machine \`"$cpu-$vendor"\' not recognized 1>&2
+				exit 1
+				;;
+		esac
+		;;
+esac
+
+# Here we canonicalize certain aliases for manufacturers.
+case $vendor in
+	digital*)
+		vendor=dec
+		;;
+	commodore*)
+		vendor=cbm
+		;;
+	*)
+		;;
+esac
+
+# Decode manufacturer-specific aliases for certain operating systems.
+
+if test x$basic_os != x
+then
+
+# First recognize some ad-hoc cases, or perhaps split kernel-os, or else just
+# set os.
+case $basic_os in
+	gnu/linux*)
+		kernel=linux
+		os=`echo "$basic_os" | sed -e 's|gnu/linux|gnu|'`
+		;;
+	os2-emx)
+		kernel=os2
+		os=`echo "$basic_os" | sed -e 's|os2-emx|emx|'`
+		;;
+	nto-qnx*)
+		kernel=nto
+		os=`echo "$basic_os" | sed -e 's|nto-qnx|qnx|'`
+		;;
+	*-*)
+		# shellcheck disable=SC2162
+		saved_IFS=$IFS
+		IFS="-" read kernel os <<EOF
+$basic_os
+EOF
+		IFS=$saved_IFS
+		;;
+	# Default OS when just kernel was specified
+	nto*)
+		kernel=nto
+		os=`echo "$basic_os" | sed -e 's|nto|qnx|'`
+		;;
+	linux*)
+		kernel=linux
+		os=`echo "$basic_os" | sed -e 's|linux|gnu|'`
+		;;
+	*)
+		kernel=
+		os=$basic_os
+		;;
+esac
+
+# Now, normalize the OS (knowing we just have one component, it's not a kernel,
+# etc.)
+case $os in
+	# First match some system type aliases that might get confused
+	# with valid system types.
+	# solaris* is a basic system type, with this one exception.
+	auroraux)
+		os=auroraux
+		;;
+	bluegene*)
+		os=cnk
+		;;
+	solaris1 | solaris1.*)
+		os=`echo "$os" | sed -e 's|solaris1|sunos4|'`
+		;;
+	solaris)
+		os=solaris2
+		;;
+	unixware*)
+		os=sysv4.2uw
+		;;
+	# es1800 is here to avoid being matched by es* (a different OS)
+	es1800*)
+		os=ose
+		;;
+	# Some version numbers need modification
+	chorusos*)
+		os=chorusos
+		;;
+	isc)
+		os=isc2.2
+		;;
+	sco6)
+		os=sco5v6
+		;;
+	sco5)
+		os=sco3.2v5
+		;;
+	sco4)
+		os=sco3.2v4
+		;;
+	sco3.2.[4-9]*)
+		os=`echo "$os" | sed -e 's/sco3.2./sco3.2v/'`
+		;;
+	sco*v* | scout)
+		# Don't match below
+		;;
+	sco*)
+		os=sco3.2v2
+		;;
+	psos*)
+		os=psos
+		;;
+	qnx*)
+		os=qnx
+		;;
+	hiux*)
+		os=hiuxwe2
+		;;
+	lynx*178)
+		os=lynxos178
+		;;
+	lynx*5)
+		os=lynxos5
+		;;
+	lynxos*)
+		# don't get caught up in next wildcard
+		;;
+	lynx*)
+		os=lynxos
+		;;
+	mac[0-9]*)
+		os=`echo "$os" | sed -e 's|mac|macos|'`
+		;;
+	opened*)
+		os=openedition
+		;;
+	os400*)
+		os=os400
+		;;
+	sunos5*)
+		os=`echo "$os" | sed -e 's|sunos5|solaris2|'`
+		;;
+	sunos6*)
+		os=`echo "$os" | sed -e 's|sunos6|solaris3|'`
+		;;
+	wince*)
+		os=wince
+		;;
+	utek*)
+		os=bsd
+		;;
+	dynix*)
+		os=bsd
+		;;
+	acis*)
+		os=aos
+		;;
+	atheos*)
+		os=atheos
+		;;
+	syllable*)
+		os=syllable
+		;;
+	386bsd)
+		os=bsd
+		;;
+	ctix* | uts*)
+		os=sysv
+		;;
+	nova*)
+		os=rtmk-nova
+		;;
+	ns2)
+		os=nextstep2
+		;;
+	# Preserve the version number of sinix5.
+	sinix5.*)
+		os=`echo "$os" | sed -e 's|sinix|sysv|'`
+		;;
+	sinix*)
+		os=sysv4
+		;;
+	tpf*)
+		os=tpf
+		;;
+	triton*)
+		os=sysv3
+		;;
+	oss*)
+		os=sysv3
+		;;
+	svr4*)
+		os=sysv4
+		;;
+	svr3)
+		os=sysv3
+		;;
+	sysvr4)
+		os=sysv4
+		;;
+	ose*)
+		os=ose
+		;;
+	*mint | mint[0-9]* | *MiNT | MiNT[0-9]*)
+		os=mint
+		;;
+	dicos*)
+		os=dicos
+		;;
+	pikeos*)
+		# Until real need of OS specific support for
+		# particular features comes up, bare metal
+		# configurations are quite functional.
+		case $cpu in
+		    arm*)
+			os=eabi
+			;;
+		    *)
+			os=elf
+			;;
+		esac
+		;;
+	*)
+		# No normalization, but not necessarily accepted, that comes below.
+		;;
+esac
+
+else
+
+# Here we handle the default operating systems that come with various machines.
+# The value should be what the vendor currently ships out the door with their
+# machine or put another way, the most popular os provided with the machine.
+
+# Note that if you're going to try to match "-MANUFACTURER" here (say,
+# "-sun"), then you have to tell the case statement up towards the top
+# that MANUFACTURER isn't an operating system.  Otherwise, code above
+# will signal an error saying that MANUFACTURER isn't an operating
+# system, and we'll never get to this point.
+
+kernel=
+case $cpu-$vendor in
+	score-*)
+		os=elf
+		;;
+	spu-*)
+		os=elf
+		;;
+	*-acorn)
+		os=riscix1.2
+		;;
+	arm*-rebel)
+		kernel=linux
+		os=gnu
+		;;
+	arm*-semi)
+		os=aout
+		;;
+	c4x-* | tic4x-*)
+		os=coff
+		;;
+	c8051-*)
+		os=elf
+		;;
+	clipper-intergraph)
+		os=clix
+		;;
+	hexagon-*)
+		os=elf
+		;;
+	tic54x-*)
+		os=coff
+		;;
+	tic55x-*)
+		os=coff
+		;;
+	tic6x-*)
+		os=coff
+		;;
+	# This must come before the *-dec entry.
+	pdp10-*)
+		os=tops20
+		;;
+	pdp11-*)
+		os=none
+		;;
+	*-dec | vax-*)
+		os=ultrix4.2
+		;;
+	m68*-apollo)
+		os=domain
+		;;
+	i386-sun)
+		os=sunos4.0.2
+		;;
+	m68000-sun)
+		os=sunos3
+		;;
+	m68*-cisco)
+		os=aout
+		;;
+	mep-*)
+		os=elf
+		;;
+	mips*-cisco)
+		os=elf
+		;;
+	mips*-*)
+		os=elf
+		;;
+	or32-*)
+		os=coff
+		;;
+	*-tti)	# must be before sparc entry or we get the wrong os.
+		os=sysv3
+		;;
+	sparc-* | *-sun)
+		os=sunos4.1.1
+		;;
+	pru-*)
+		os=elf
+		;;
+	*-be)
+		os=beos
+		;;
+	*-ibm)
+		os=aix
+		;;
+	*-knuth)
+		os=mmixware
+		;;
+	*-wec)
+		os=proelf
+		;;
+	*-winbond)
+		os=proelf
+		;;
+	*-oki)
+		os=proelf
+		;;
+	*-hp)
+		os=hpux
+		;;
+	*-hitachi)
+		os=hiux
+		;;
+	i860-* | *-att | *-ncr | *-altos | *-motorola | *-convergent)
+		os=sysv
+		;;
+	*-cbm)
+		os=amigaos
+		;;
+	*-dg)
+		os=dgux
+		;;
+	*-dolphin)
+		os=sysv3
+		;;
+	m68k-ccur)
+		os=rtu
+		;;
+	m88k-omron*)
+		os=luna
+		;;
+	*-next)
+		os=nextstep
+		;;
+	*-sequent)
+		os=ptx
+		;;
+	*-crds)
+		os=unos
+		;;
+	*-ns)
+		os=genix
+		;;
+	i370-*)
+		os=mvs
+		;;
+	*-gould)
+		os=sysv
+		;;
+	*-highlevel)
+		os=bsd
+		;;
+	*-encore)
+		os=bsd
+		;;
+	*-sgi)
+		os=irix
+		;;
+	*-siemens)
+		os=sysv4
+		;;
+	*-masscomp)
+		os=rtu
+		;;
+	f30[01]-fujitsu | f700-fujitsu)
+		os=uxpv
+		;;
+	*-rom68k)
+		os=coff
+		;;
+	*-*bug)
+		os=coff
+		;;
+	*-apple)
+		os=macos
+		;;
+	*-atari*)
+		os=mint
+		;;
+	*-wrs)
+		os=vxworks
+		;;
+	*)
+		os=none
+		;;
+esac
+
+fi
+
+# Now, validate our (potentially fixed-up) OS.
+case $os in
+	# Sometimes we do "kernel-libc", so those need to count as OSes.
+	musl* | newlib* | relibc* | uclibc*)
+		;;
+	# Likewise for "kernel-abi"
+	eabi* | gnueabi*)
+		;;
+	# VxWorks passes extra cpu info in the 4th filed.
+	simlinux | simwindows | spe)
+		;;
+	# Now accept the basic system types.
+	# The portable systems comes first.
+	# Each alternative MUST end in a * to match a version number.
+	gnu* | android* | bsd* | mach* | minix* | genix* | ultrix* | irix* \
+	     | *vms* | esix* | aix* | cnk* | sunos | sunos[34]* \
+	     | hpux* | unos* | osf* | luna* | dgux* | auroraux* | solaris* \
+	     | sym* |  plan9* | psp* | sim* | xray* | os68k* | v88r* \
+	     | hiux* | abug | nacl* | netware* | windows* \
+	     | os9* | macos* | osx* | ios* \
+	     | mpw* | magic* | mmixware* | mon960* | lnews* \
+	     | amigaos* | amigados* | msdos* | newsos* | unicos* | aof* \
+	     | aos* | aros* | cloudabi* | sortix* | twizzler* \
+	     | nindy* | vxsim* | vxworks* | ebmon* | hms* | mvs* \
+	     | clix* | riscos* | uniplus* | iris* | isc* | rtu* | xenix* \
+	     | mirbsd* | netbsd* | dicos* | openedition* | ose* \
+	     | bitrig* | openbsd* | secbsd* | solidbsd* | libertybsd* | os108* \
+	     | ekkobsd* | freebsd* | riscix* | lynxos* | os400* \
+	     | bosx* | nextstep* | cxux* | aout* | elf* | oabi* \
+	     | ptx* | coff* | ecoff* | winnt* | domain* | vsta* \
+	     | udi* | lites* | ieee* | go32* | aux* | hcos* \
+	     | chorusrdb* | cegcc* | glidix* | serenity* \
+	     | cygwin* | msys* | pe* | moss* | proelf* | rtems* \
+	     | midipix* | mingw32* | mingw64* | mint* \
+	     | uxpv* | beos* | mpeix* | udk* | moxiebox* \
+	     | interix* | uwin* | mks* | rhapsody* | darwin* \
+	     | openstep* | oskit* | conix* | pw32* | nonstopux* \
+	     | storm-chaos* | tops10* | tenex* | tops20* | its* \
+	     | os2* | vos* | palmos* | uclinux* | nucleus* | morphos* \
+	     | scout* | superux* | sysv* | rtmk* | tpf* | windiss* \
+	     | powermax* | dnix* | nx6 | nx7 | sei* | dragonfly* \
+	     | skyos* | haiku* | rdos* | toppers* | drops* | es* \
+	     | onefs* | tirtos* | phoenix* | fuchsia* | redox* | bme* \
+	     | midnightbsd* | amdhsa* | unleashed* | emscripten* | wasi* \
+	     | nsk* | powerunix* | genode* | zvmoe* | qnx* | emx* | zephyr* \
+	     | fiwix* )
+		;;
+	# This one is extra strict with allowed versions
+	sco3.2v2 | sco3.2v[4-9]* | sco5v6*)
+		# Don't forget version if it is 3.2v4 or newer.
+		;;
+	none)
+		;;
+	*)
+		echo Invalid configuration \`"$1"\': OS \`"$os"\' not recognized 1>&2
+		exit 1
+		;;
+esac
+
+# As a final step for OS-related things, validate the OS-kernel combination
+# (given a valid OS), if there is a kernel.
+case $kernel-$os in
+	linux-gnu* | linux-dietlibc* | linux-android* | linux-newlib* \
+		   | linux-musl* | linux-relibc* | linux-uclibc* )
+		;;
+	uclinux-uclibc* )
+		;;
+	-dietlibc* | -newlib* | -musl* | -relibc* | -uclibc* )
+		# These are just libc implementations, not actual OSes, and thus
+		# require a kernel.
+		echo "Invalid configuration \`$1': libc \`$os' needs explicit kernel." 1>&2
+		exit 1
+		;;
+	kfreebsd*-gnu* | kopensolaris*-gnu*)
+		;;
+	vxworks-simlinux | vxworks-simwindows | vxworks-spe)
+		;;
+	nto-qnx*)
+		;;
+	os2-emx)
+		;;
+	*-eabi* | *-gnueabi*)
+		;;
+	-*)
+		# Blank kernel with real OS is always fine.
+		;;
+	*-*)
+		echo "Invalid configuration \`$1': Kernel \`$kernel' not known to work with OS \`$os'." 1>&2
+		exit 1
+		;;
+esac
+
+# Here we handle the case where we know the os, and the CPU type, but not the
+# manufacturer.  We pick the logical manufacturer.
+case $vendor in
+	unknown)
+		case $cpu-$os in
+			*-riscix*)
+				vendor=acorn
+				;;
+			*-sunos*)
+				vendor=sun
+				;;
+			*-cnk* | *-aix*)
+				vendor=ibm
+				;;
+			*-beos*)
+				vendor=be
+				;;
+			*-hpux*)
+				vendor=hp
+				;;
+			*-mpeix*)
+				vendor=hp
+				;;
+			*-hiux*)
+				vendor=hitachi
+				;;
+			*-unos*)
+				vendor=crds
+				;;
+			*-dgux*)
+				vendor=dg
+				;;
+			*-luna*)
+				vendor=omron
+				;;
+			*-genix*)
+				vendor=ns
+				;;
+			*-clix*)
+				vendor=intergraph
+				;;
+			*-mvs* | *-opened*)
+				vendor=ibm
+				;;
+			*-os400*)
+				vendor=ibm
+				;;
+			s390-* | s390x-*)
+				vendor=ibm
+				;;
+			*-ptx*)
+				vendor=sequent
+				;;
+			*-tpf*)
+				vendor=ibm
+				;;
+			*-vxsim* | *-vxworks* | *-windiss*)
+				vendor=wrs
+				;;
+			*-aux*)
+				vendor=apple
+				;;
+			*-hms*)
+				vendor=hitachi
+				;;
+			*-mpw* | *-macos*)
+				vendor=apple
+				;;
+			*-*mint | *-mint[0-9]* | *-*MiNT | *-MiNT[0-9]*)
+				vendor=atari
+				;;
+			*-vos*)
+				vendor=stratus
+				;;
+		esac
+		;;
+esac
+
+echo "$cpu-$vendor-${kernel:+$kernel-}$os"
+exit
+
+# Local variables:
+# eval: (add-hook 'before-save-hook 'time-stamp)
+# time-stamp-start: "timestamp='"
+# time-stamp-format: "%:y-%02m-%02d"
+# time-stamp-end: "'"
+# End:
diff --git a/recipes/clustalo/meta.yaml b/recipes/clustalo/meta.yaml
index 9a2ecfb62c6fc..cedb7aded4a1a 100644
--- a/recipes/clustalo/meta.yaml
+++ b/recipes/clustalo/meta.yaml
@@ -19,7 +19,9 @@ requirements:
     - argtable2
 
 build:
-  number: 7
+  number: 8
+  run_exports:
+    - {{ pin_subpackage('clustalo', max_pin="x") }}
 
 test:
   commands:
@@ -29,3 +31,7 @@ about:
   home: "http://www.clustal.org/omega/"
   license: "GPLv2"
   summary: "Latest version of Clustal: a multiple sequence alignment program for DNA or proteins"
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/clustalw/build.sh b/recipes/clustalw/build.sh
index d5c9f16d06afe..d7f3623f6c4d8 100644
--- a/recipes/clustalw/build.sh
+++ b/recipes/clustalw/build.sh
@@ -1,5 +1,8 @@
 #!/bin/bash
 
+# use newer config.guess and config.sub that support linux-aarch64
+cp ${RECIPE_DIR}/config.* .
+
 mkdir -p ${PREFIX}
 ./configure --prefix=$PREFIX
 make install
diff --git a/recipes/clustalw/config.guess b/recipes/clustalw/config.guess
new file mode 100644
index 0000000000000..1972fda8eb05d
--- /dev/null
+++ b/recipes/clustalw/config.guess
@@ -0,0 +1,1700 @@
+#! /bin/sh
+# Attempt to guess a canonical system name.
+#   Copyright 1992-2021 Free Software Foundation, Inc.
+
+timestamp='2021-01-25'
+
+# This file is free software; you can redistribute it and/or modify it
+# under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+# General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, see <https://www.gnu.org/licenses/>.
+#
+# As a special exception to the GNU General Public License, if you
+# distribute this file as part of a program that contains a
+# configuration script generated by Autoconf, you may include it under
+# the same distribution terms that you use for the rest of that
+# program.  This Exception is an additional permission under section 7
+# of the GNU General Public License, version 3 ("GPLv3").
+#
+# Originally written by Per Bothner; maintained since 2000 by Ben Elliston.
+#
+# You can get the latest version of this script from:
+# https://git.savannah.gnu.org/cgit/config.git/plain/config.guess
+#
+# Please send patches to <config-patches@gnu.org>.
+
+
+me=$(echo "$0" | sed -e 's,.*/,,')
+
+usage="\
+Usage: $0 [OPTION]
+
+Output the configuration name of the system \`$me' is run on.
+
+Options:
+  -h, --help         print this help, then exit
+  -t, --time-stamp   print date of last modification, then exit
+  -v, --version      print version number, then exit
+
+Report bugs and patches to <config-patches@gnu.org>."
+
+version="\
+GNU config.guess ($timestamp)
+
+Originally written by Per Bothner.
+Copyright 1992-2021 Free Software Foundation, Inc.
+
+This is free software; see the source for copying conditions.  There is NO
+warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE."
+
+help="
+Try \`$me --help' for more information."
+
+# Parse command line
+while test $# -gt 0 ; do
+  case $1 in
+    --time-stamp | --time* | -t )
+       echo "$timestamp" ; exit ;;
+    --version | -v )
+       echo "$version" ; exit ;;
+    --help | --h* | -h )
+       echo "$usage"; exit ;;
+    -- )     # Stop option processing
+       shift; break ;;
+    - )	# Use stdin as input.
+       break ;;
+    -* )
+       echo "$me: invalid option $1$help" >&2
+       exit 1 ;;
+    * )
+       break ;;
+  esac
+done
+
+if test $# != 0; then
+  echo "$me: too many arguments$help" >&2
+  exit 1
+fi
+
+# CC_FOR_BUILD -- compiler used by this script. Note that the use of a
+# compiler to aid in system detection is discouraged as it requires
+# temporary files to be created and, as you can see below, it is a
+# headache to deal with in a portable fashion.
+
+# Historically, `CC_FOR_BUILD' used to be named `HOST_CC'. We still
+# use `HOST_CC' if defined, but it is deprecated.
+
+# Portable tmp directory creation inspired by the Autoconf team.
+
+tmp=
+# shellcheck disable=SC2172
+trap 'test -z "$tmp" || rm -fr "$tmp"' 0 1 2 13 15
+
+set_cc_for_build() {
+    # prevent multiple calls if $tmp is already set
+    test "$tmp" && return 0
+    : "${TMPDIR=/tmp}"
+    # shellcheck disable=SC2039
+    { tmp=$( (umask 077 && mktemp -d "$TMPDIR/cgXXXXXX") 2>/dev/null) && test -n "$tmp" && test -d "$tmp" ; } ||
+	{ test -n "$RANDOM" && tmp=$TMPDIR/cg$$-$RANDOM && (umask 077 && mkdir "$tmp" 2>/dev/null) ; } ||
+	{ tmp=$TMPDIR/cg-$$ && (umask 077 && mkdir "$tmp" 2>/dev/null) && echo "Warning: creating insecure temp directory" >&2 ; } ||
+	{ echo "$me: cannot create a temporary directory in $TMPDIR" >&2 ; exit 1 ; }
+    dummy=$tmp/dummy
+    case ${CC_FOR_BUILD-},${HOST_CC-},${CC-} in
+	,,)    echo "int x;" > "$dummy.c"
+	       for driver in cc gcc c89 c99 ; do
+		   if ($driver -c -o "$dummy.o" "$dummy.c") >/dev/null 2>&1 ; then
+		       CC_FOR_BUILD="$driver"
+		       break
+		   fi
+	       done
+	       if test x"$CC_FOR_BUILD" = x ; then
+		   CC_FOR_BUILD=no_compiler_found
+	       fi
+	       ;;
+	,,*)   CC_FOR_BUILD=$CC ;;
+	,*,*)  CC_FOR_BUILD=$HOST_CC ;;
+    esac
+}
+
+# This is needed to find uname on a Pyramid OSx when run in the BSD universe.
+# (ghazi@noc.rutgers.edu 1994-08-24)
+if test -f /.attbin/uname ; then
+	PATH=$PATH:/.attbin ; export PATH
+fi
+
+UNAME_MACHINE=$( (uname -m) 2>/dev/null) || UNAME_MACHINE=unknown
+UNAME_RELEASE=$( (uname -r) 2>/dev/null) || UNAME_RELEASE=unknown
+UNAME_SYSTEM=$( (uname -s) 2>/dev/null) || UNAME_SYSTEM=unknown
+UNAME_VERSION=$( (uname -v) 2>/dev/null) || UNAME_VERSION=unknown
+
+case "$UNAME_SYSTEM" in
+Linux|GNU|GNU/*)
+	LIBC=unknown
+
+	set_cc_for_build
+	cat <<-EOF > "$dummy.c"
+	#include <features.h>
+	#if defined(__UCLIBC__)
+	LIBC=uclibc
+	#elif defined(__dietlibc__)
+	LIBC=dietlibc
+	#elif defined(__GLIBC__)
+	LIBC=gnu
+	#else
+	#include <stdarg.h>
+	/* First heuristic to detect musl libc.  */
+	#ifdef __DEFINED_va_list
+	LIBC=musl
+	#endif
+	#endif
+	EOF
+	eval "$($CC_FOR_BUILD -E "$dummy.c" 2>/dev/null | grep '^LIBC' | sed 's, ,,g')"
+
+	# Second heuristic to detect musl libc.
+	if [ "$LIBC" = unknown ] &&
+	   command -v ldd >/dev/null &&
+	   ldd --version 2>&1 | grep -q ^musl; then
+		LIBC=musl
+	fi
+
+	# If the system lacks a compiler, then just pick glibc.
+	# We could probably try harder.
+	if [ "$LIBC" = unknown ]; then
+		LIBC=gnu
+	fi
+	;;
+esac
+
+# Note: order is significant - the case branches are not exclusive.
+
+case "$UNAME_MACHINE:$UNAME_SYSTEM:$UNAME_RELEASE:$UNAME_VERSION" in
+    *:NetBSD:*:*)
+	# NetBSD (nbsd) targets should (where applicable) match one or
+	# more of the tuples: *-*-netbsdelf*, *-*-netbsdaout*,
+	# *-*-netbsdecoff* and *-*-netbsd*.  For targets that recently
+	# switched to ELF, *-*-netbsd* would select the old
+	# object file format.  This provides both forward
+	# compatibility and a consistent mechanism for selecting the
+	# object file format.
+	#
+	# Note: NetBSD doesn't particularly care about the vendor
+	# portion of the name.  We always set it to "unknown".
+	UNAME_MACHINE_ARCH=$( (uname -p 2>/dev/null || \
+	    /sbin/sysctl -n hw.machine_arch 2>/dev/null || \
+	    /usr/sbin/sysctl -n hw.machine_arch 2>/dev/null || \
+	    echo unknown))
+	case "$UNAME_MACHINE_ARCH" in
+	    aarch64eb) machine=aarch64_be-unknown ;;
+	    armeb) machine=armeb-unknown ;;
+	    arm*) machine=arm-unknown ;;
+	    sh3el) machine=shl-unknown ;;
+	    sh3eb) machine=sh-unknown ;;
+	    sh5el) machine=sh5le-unknown ;;
+	    earmv*)
+		arch=$(echo "$UNAME_MACHINE_ARCH" | sed -e 's,^e\(armv[0-9]\).*$,\1,')
+		endian=$(echo "$UNAME_MACHINE_ARCH" | sed -ne 's,^.*\(eb\)$,\1,p')
+		machine="${arch}${endian}"-unknown
+		;;
+	    *) machine="$UNAME_MACHINE_ARCH"-unknown ;;
+	esac
+	# The Operating System including object format, if it has switched
+	# to ELF recently (or will in the future) and ABI.
+	case "$UNAME_MACHINE_ARCH" in
+	    earm*)
+		os=netbsdelf
+		;;
+	    arm*|i386|m68k|ns32k|sh3*|sparc|vax)
+		set_cc_for_build
+		if echo __ELF__ | $CC_FOR_BUILD -E - 2>/dev/null \
+			| grep -q __ELF__
+		then
+		    # Once all utilities can be ECOFF (netbsdecoff) or a.out (netbsdaout).
+		    # Return netbsd for either.  FIX?
+		    os=netbsd
+		else
+		    os=netbsdelf
+		fi
+		;;
+	    *)
+		os=netbsd
+		;;
+	esac
+	# Determine ABI tags.
+	case "$UNAME_MACHINE_ARCH" in
+	    earm*)
+		expr='s/^earmv[0-9]/-eabi/;s/eb$//'
+		abi=$(echo "$UNAME_MACHINE_ARCH" | sed -e "$expr")
+		;;
+	esac
+	# The OS release
+	# Debian GNU/NetBSD machines have a different userland, and
+	# thus, need a distinct triplet. However, they do not need
+	# kernel version information, so it can be replaced with a
+	# suitable tag, in the style of linux-gnu.
+	case "$UNAME_VERSION" in
+	    Debian*)
+		release='-gnu'
+		;;
+	    *)
+		release=$(echo "$UNAME_RELEASE" | sed -e 's/[-_].*//' | cut -d. -f1,2)
+		;;
+	esac
+	# Since CPU_TYPE-MANUFACTURER-KERNEL-OPERATING_SYSTEM:
+	# contains redundant information, the shorter form:
+	# CPU_TYPE-MANUFACTURER-OPERATING_SYSTEM is used.
+	echo "$machine-${os}${release}${abi-}"
+	exit ;;
+    *:Bitrig:*:*)
+	UNAME_MACHINE_ARCH=$(arch | sed 's/Bitrig.//')
+	echo "$UNAME_MACHINE_ARCH"-unknown-bitrig"$UNAME_RELEASE"
+	exit ;;
+    *:OpenBSD:*:*)
+	UNAME_MACHINE_ARCH=$(arch | sed 's/OpenBSD.//')
+	echo "$UNAME_MACHINE_ARCH"-unknown-openbsd"$UNAME_RELEASE"
+	exit ;;
+    *:LibertyBSD:*:*)
+	UNAME_MACHINE_ARCH=$(arch | sed 's/^.*BSD\.//')
+	echo "$UNAME_MACHINE_ARCH"-unknown-libertybsd"$UNAME_RELEASE"
+	exit ;;
+    *:MidnightBSD:*:*)
+	echo "$UNAME_MACHINE"-unknown-midnightbsd"$UNAME_RELEASE"
+	exit ;;
+    *:ekkoBSD:*:*)
+	echo "$UNAME_MACHINE"-unknown-ekkobsd"$UNAME_RELEASE"
+	exit ;;
+    *:SolidBSD:*:*)
+	echo "$UNAME_MACHINE"-unknown-solidbsd"$UNAME_RELEASE"
+	exit ;;
+    *:OS108:*:*)
+	echo "$UNAME_MACHINE"-unknown-os108_"$UNAME_RELEASE"
+	exit ;;
+    macppc:MirBSD:*:*)
+	echo powerpc-unknown-mirbsd"$UNAME_RELEASE"
+	exit ;;
+    *:MirBSD:*:*)
+	echo "$UNAME_MACHINE"-unknown-mirbsd"$UNAME_RELEASE"
+	exit ;;
+    *:Sortix:*:*)
+	echo "$UNAME_MACHINE"-unknown-sortix
+	exit ;;
+    *:Twizzler:*:*)
+	echo "$UNAME_MACHINE"-unknown-twizzler
+	exit ;;
+    *:Redox:*:*)
+	echo "$UNAME_MACHINE"-unknown-redox
+	exit ;;
+    mips:OSF1:*.*)
+	echo mips-dec-osf1
+	exit ;;
+    alpha:OSF1:*:*)
+	case $UNAME_RELEASE in
+	*4.0)
+		UNAME_RELEASE=$(/usr/sbin/sizer -v | awk '{print $3}')
+		;;
+	*5.*)
+		UNAME_RELEASE=$(/usr/sbin/sizer -v | awk '{print $4}')
+		;;
+	esac
+	# According to Compaq, /usr/sbin/psrinfo has been available on
+	# OSF/1 and Tru64 systems produced since 1995.  I hope that
+	# covers most systems running today.  This code pipes the CPU
+	# types through head -n 1, so we only detect the type of CPU 0.
+	ALPHA_CPU_TYPE=$(/usr/sbin/psrinfo -v | sed -n -e 's/^  The alpha \(.*\) processor.*$/\1/p' | head -n 1)
+	case "$ALPHA_CPU_TYPE" in
+	    "EV4 (21064)")
+		UNAME_MACHINE=alpha ;;
+	    "EV4.5 (21064)")
+		UNAME_MACHINE=alpha ;;
+	    "LCA4 (21066/21068)")
+		UNAME_MACHINE=alpha ;;
+	    "EV5 (21164)")
+		UNAME_MACHINE=alphaev5 ;;
+	    "EV5.6 (21164A)")
+		UNAME_MACHINE=alphaev56 ;;
+	    "EV5.6 (21164PC)")
+		UNAME_MACHINE=alphapca56 ;;
+	    "EV5.7 (21164PC)")
+		UNAME_MACHINE=alphapca57 ;;
+	    "EV6 (21264)")
+		UNAME_MACHINE=alphaev6 ;;
+	    "EV6.7 (21264A)")
+		UNAME_MACHINE=alphaev67 ;;
+	    "EV6.8CB (21264C)")
+		UNAME_MACHINE=alphaev68 ;;
+	    "EV6.8AL (21264B)")
+		UNAME_MACHINE=alphaev68 ;;
+	    "EV6.8CX (21264D)")
+		UNAME_MACHINE=alphaev68 ;;
+	    "EV6.9A (21264/EV69A)")
+		UNAME_MACHINE=alphaev69 ;;
+	    "EV7 (21364)")
+		UNAME_MACHINE=alphaev7 ;;
+	    "EV7.9 (21364A)")
+		UNAME_MACHINE=alphaev79 ;;
+	esac
+	# A Pn.n version is a patched version.
+	# A Vn.n version is a released version.
+	# A Tn.n version is a released field test version.
+	# A Xn.n version is an unreleased experimental baselevel.
+	# 1.2 uses "1.2" for uname -r.
+	echo "$UNAME_MACHINE"-dec-osf"$(echo "$UNAME_RELEASE" | sed -e 's/^[PVTX]//' | tr ABCDEFGHIJKLMNOPQRSTUVWXYZ abcdefghijklmnopqrstuvwxyz)"
+	# Reset EXIT trap before exiting to avoid spurious non-zero exit code.
+	exitcode=$?
+	trap '' 0
+	exit $exitcode ;;
+    Amiga*:UNIX_System_V:4.0:*)
+	echo m68k-unknown-sysv4
+	exit ;;
+    *:[Aa]miga[Oo][Ss]:*:*)
+	echo "$UNAME_MACHINE"-unknown-amigaos
+	exit ;;
+    *:[Mm]orph[Oo][Ss]:*:*)
+	echo "$UNAME_MACHINE"-unknown-morphos
+	exit ;;
+    *:OS/390:*:*)
+	echo i370-ibm-openedition
+	exit ;;
+    *:z/VM:*:*)
+	echo s390-ibm-zvmoe
+	exit ;;
+    *:OS400:*:*)
+	echo powerpc-ibm-os400
+	exit ;;
+    arm:RISC*:1.[012]*:*|arm:riscix:1.[012]*:*)
+	echo arm-acorn-riscix"$UNAME_RELEASE"
+	exit ;;
+    arm*:riscos:*:*|arm*:RISCOS:*:*)
+	echo arm-unknown-riscos
+	exit ;;
+    SR2?01:HI-UX/MPP:*:* | SR8000:HI-UX/MPP:*:*)
+	echo hppa1.1-hitachi-hiuxmpp
+	exit ;;
+    Pyramid*:OSx*:*:* | MIS*:OSx*:*:* | MIS*:SMP_DC-OSx*:*:*)
+	# akee@wpdis03.wpafb.af.mil (Earle F. Ake) contributed MIS and NILE.
+	if test "$( (/bin/universe) 2>/dev/null)" = att ; then
+		echo pyramid-pyramid-sysv3
+	else
+		echo pyramid-pyramid-bsd
+	fi
+	exit ;;
+    NILE*:*:*:dcosx)
+	echo pyramid-pyramid-svr4
+	exit ;;
+    DRS?6000:unix:4.0:6*)
+	echo sparc-icl-nx6
+	exit ;;
+    DRS?6000:UNIX_SV:4.2*:7* | DRS?6000:isis:4.2*:7*)
+	case $(/usr/bin/uname -p) in
+	    sparc) echo sparc-icl-nx7; exit ;;
+	esac ;;
+    s390x:SunOS:*:*)
+	echo "$UNAME_MACHINE"-ibm-solaris2"$(echo "$UNAME_RELEASE" | sed -e 's/[^.]*//')"
+	exit ;;
+    sun4H:SunOS:5.*:*)
+	echo sparc-hal-solaris2"$(echo "$UNAME_RELEASE"|sed -e 's/[^.]*//')"
+	exit ;;
+    sun4*:SunOS:5.*:* | tadpole*:SunOS:5.*:*)
+	echo sparc-sun-solaris2"$(echo "$UNAME_RELEASE" | sed -e 's/[^.]*//')"
+	exit ;;
+    i86pc:AuroraUX:5.*:* | i86xen:AuroraUX:5.*:*)
+	echo i386-pc-auroraux"$UNAME_RELEASE"
+	exit ;;
+    i86pc:SunOS:5.*:* | i86xen:SunOS:5.*:*)
+	set_cc_for_build
+	SUN_ARCH=i386
+	# If there is a compiler, see if it is configured for 64-bit objects.
+	# Note that the Sun cc does not turn __LP64__ into 1 like gcc does.
+	# This test works for both compilers.
+	if test "$CC_FOR_BUILD" != no_compiler_found; then
+	    if (echo '#ifdef __amd64'; echo IS_64BIT_ARCH; echo '#endif') | \
+		(CCOPTS="" $CC_FOR_BUILD -E - 2>/dev/null) | \
+		grep IS_64BIT_ARCH >/dev/null
+	    then
+		SUN_ARCH=x86_64
+	    fi
+	fi
+	echo "$SUN_ARCH"-pc-solaris2"$(echo "$UNAME_RELEASE"|sed -e 's/[^.]*//')"
+	exit ;;
+    sun4*:SunOS:6*:*)
+	# According to config.sub, this is the proper way to canonicalize
+	# SunOS6.  Hard to guess exactly what SunOS6 will be like, but
+	# it's likely to be more like Solaris than SunOS4.
+	echo sparc-sun-solaris3"$(echo "$UNAME_RELEASE"|sed -e 's/[^.]*//')"
+	exit ;;
+    sun4*:SunOS:*:*)
+	case "$(/usr/bin/arch -k)" in
+	    Series*|S4*)
+		UNAME_RELEASE=$(uname -v)
+		;;
+	esac
+	# Japanese Language versions have a version number like `4.1.3-JL'.
+	echo sparc-sun-sunos"$(echo "$UNAME_RELEASE"|sed -e 's/-/_/')"
+	exit ;;
+    sun3*:SunOS:*:*)
+	echo m68k-sun-sunos"$UNAME_RELEASE"
+	exit ;;
+    sun*:*:4.2BSD:*)
+	UNAME_RELEASE=$( (sed 1q /etc/motd | awk '{print substr($5,1,3)}') 2>/dev/null)
+	test "x$UNAME_RELEASE" = x && UNAME_RELEASE=3
+	case "$(/bin/arch)" in
+	    sun3)
+		echo m68k-sun-sunos"$UNAME_RELEASE"
+		;;
+	    sun4)
+		echo sparc-sun-sunos"$UNAME_RELEASE"
+		;;
+	esac
+	exit ;;
+    aushp:SunOS:*:*)
+	echo sparc-auspex-sunos"$UNAME_RELEASE"
+	exit ;;
+    # The situation for MiNT is a little confusing.  The machine name
+    # can be virtually everything (everything which is not
+    # "atarist" or "atariste" at least should have a processor
+    # > m68000).  The system name ranges from "MiNT" over "FreeMiNT"
+    # to the lowercase version "mint" (or "freemint").  Finally
+    # the system name "TOS" denotes a system which is actually not
+    # MiNT.  But MiNT is downward compatible to TOS, so this should
+    # be no problem.
+    atarist[e]:*MiNT:*:* | atarist[e]:*mint:*:* | atarist[e]:*TOS:*:*)
+	echo m68k-atari-mint"$UNAME_RELEASE"
+	exit ;;
+    atari*:*MiNT:*:* | atari*:*mint:*:* | atarist[e]:*TOS:*:*)
+	echo m68k-atari-mint"$UNAME_RELEASE"
+	exit ;;
+    *falcon*:*MiNT:*:* | *falcon*:*mint:*:* | *falcon*:*TOS:*:*)
+	echo m68k-atari-mint"$UNAME_RELEASE"
+	exit ;;
+    milan*:*MiNT:*:* | milan*:*mint:*:* | *milan*:*TOS:*:*)
+	echo m68k-milan-mint"$UNAME_RELEASE"
+	exit ;;
+    hades*:*MiNT:*:* | hades*:*mint:*:* | *hades*:*TOS:*:*)
+	echo m68k-hades-mint"$UNAME_RELEASE"
+	exit ;;
+    *:*MiNT:*:* | *:*mint:*:* | *:*TOS:*:*)
+	echo m68k-unknown-mint"$UNAME_RELEASE"
+	exit ;;
+    m68k:machten:*:*)
+	echo m68k-apple-machten"$UNAME_RELEASE"
+	exit ;;
+    powerpc:machten:*:*)
+	echo powerpc-apple-machten"$UNAME_RELEASE"
+	exit ;;
+    RISC*:Mach:*:*)
+	echo mips-dec-mach_bsd4.3
+	exit ;;
+    RISC*:ULTRIX:*:*)
+	echo mips-dec-ultrix"$UNAME_RELEASE"
+	exit ;;
+    VAX*:ULTRIX*:*:*)
+	echo vax-dec-ultrix"$UNAME_RELEASE"
+	exit ;;
+    2020:CLIX:*:* | 2430:CLIX:*:*)
+	echo clipper-intergraph-clix"$UNAME_RELEASE"
+	exit ;;
+    mips:*:*:UMIPS | mips:*:*:RISCos)
+	set_cc_for_build
+	sed 's/^	//' << EOF > "$dummy.c"
+#ifdef __cplusplus
+#include <stdio.h>  /* for printf() prototype */
+	int main (int argc, char *argv[]) {
+#else
+	int main (argc, argv) int argc; char *argv[]; {
+#endif
+	#if defined (host_mips) && defined (MIPSEB)
+	#if defined (SYSTYPE_SYSV)
+	  printf ("mips-mips-riscos%ssysv\\n", argv[1]); exit (0);
+	#endif
+	#if defined (SYSTYPE_SVR4)
+	  printf ("mips-mips-riscos%ssvr4\\n", argv[1]); exit (0);
+	#endif
+	#if defined (SYSTYPE_BSD43) || defined(SYSTYPE_BSD)
+	  printf ("mips-mips-riscos%sbsd\\n", argv[1]); exit (0);
+	#endif
+	#endif
+	  exit (-1);
+	}
+EOF
+	$CC_FOR_BUILD -o "$dummy" "$dummy.c" &&
+	  dummyarg=$(echo "$UNAME_RELEASE" | sed -n 's/\([0-9]*\).*/\1/p') &&
+	  SYSTEM_NAME=$("$dummy" "$dummyarg") &&
+	    { echo "$SYSTEM_NAME"; exit; }
+	echo mips-mips-riscos"$UNAME_RELEASE"
+	exit ;;
+    Motorola:PowerMAX_OS:*:*)
+	echo powerpc-motorola-powermax
+	exit ;;
+    Motorola:*:4.3:PL8-*)
+	echo powerpc-harris-powermax
+	exit ;;
+    Night_Hawk:*:*:PowerMAX_OS | Synergy:PowerMAX_OS:*:*)
+	echo powerpc-harris-powermax
+	exit ;;
+    Night_Hawk:Power_UNIX:*:*)
+	echo powerpc-harris-powerunix
+	exit ;;
+    m88k:CX/UX:7*:*)
+	echo m88k-harris-cxux7
+	exit ;;
+    m88k:*:4*:R4*)
+	echo m88k-motorola-sysv4
+	exit ;;
+    m88k:*:3*:R3*)
+	echo m88k-motorola-sysv3
+	exit ;;
+    AViiON:dgux:*:*)
+	# DG/UX returns AViiON for all architectures
+	UNAME_PROCESSOR=$(/usr/bin/uname -p)
+	if test "$UNAME_PROCESSOR" = mc88100 || test "$UNAME_PROCESSOR" = mc88110
+	then
+	    if test "$TARGET_BINARY_INTERFACE"x = m88kdguxelfx || \
+	       test "$TARGET_BINARY_INTERFACE"x = x
+	    then
+		echo m88k-dg-dgux"$UNAME_RELEASE"
+	    else
+		echo m88k-dg-dguxbcs"$UNAME_RELEASE"
+	    fi
+	else
+	    echo i586-dg-dgux"$UNAME_RELEASE"
+	fi
+	exit ;;
+    M88*:DolphinOS:*:*)	# DolphinOS (SVR3)
+	echo m88k-dolphin-sysv3
+	exit ;;
+    M88*:*:R3*:*)
+	# Delta 88k system running SVR3
+	echo m88k-motorola-sysv3
+	exit ;;
+    XD88*:*:*:*) # Tektronix XD88 system running UTekV (SVR3)
+	echo m88k-tektronix-sysv3
+	exit ;;
+    Tek43[0-9][0-9]:UTek:*:*) # Tektronix 4300 system running UTek (BSD)
+	echo m68k-tektronix-bsd
+	exit ;;
+    *:IRIX*:*:*)
+	echo mips-sgi-irix"$(echo "$UNAME_RELEASE"|sed -e 's/-/_/g')"
+	exit ;;
+    ????????:AIX?:[12].1:2)   # AIX 2.2.1 or AIX 2.1.1 is RT/PC AIX.
+	echo romp-ibm-aix     # uname -m gives an 8 hex-code CPU id
+	exit ;;               # Note that: echo "'$(uname -s)'" gives 'AIX '
+    i*86:AIX:*:*)
+	echo i386-ibm-aix
+	exit ;;
+    ia64:AIX:*:*)
+	if test -x /usr/bin/oslevel ; then
+		IBM_REV=$(/usr/bin/oslevel)
+	else
+		IBM_REV="$UNAME_VERSION.$UNAME_RELEASE"
+	fi
+	echo "$UNAME_MACHINE"-ibm-aix"$IBM_REV"
+	exit ;;
+    *:AIX:2:3)
+	if grep bos325 /usr/include/stdio.h >/dev/null 2>&1; then
+		set_cc_for_build
+		sed 's/^		//' << EOF > "$dummy.c"
+		#include <sys/systemcfg.h>
+
+		main()
+			{
+			if (!__power_pc())
+				exit(1);
+			puts("powerpc-ibm-aix3.2.5");
+			exit(0);
+			}
+EOF
+		if $CC_FOR_BUILD -o "$dummy" "$dummy.c" && SYSTEM_NAME=$("$dummy")
+		then
+			echo "$SYSTEM_NAME"
+		else
+			echo rs6000-ibm-aix3.2.5
+		fi
+	elif grep bos324 /usr/include/stdio.h >/dev/null 2>&1; then
+		echo rs6000-ibm-aix3.2.4
+	else
+		echo rs6000-ibm-aix3.2
+	fi
+	exit ;;
+    *:AIX:*:[4567])
+	IBM_CPU_ID=$(/usr/sbin/lsdev -C -c processor -S available | sed 1q | awk '{ print $1 }')
+	if /usr/sbin/lsattr -El "$IBM_CPU_ID" | grep ' POWER' >/dev/null 2>&1; then
+		IBM_ARCH=rs6000
+	else
+		IBM_ARCH=powerpc
+	fi
+	if test -x /usr/bin/lslpp ; then
+		IBM_REV=$(/usr/bin/lslpp -Lqc bos.rte.libc |
+			   awk -F: '{ print $3 }' | sed s/[0-9]*$/0/)
+	else
+		IBM_REV="$UNAME_VERSION.$UNAME_RELEASE"
+	fi
+	echo "$IBM_ARCH"-ibm-aix"$IBM_REV"
+	exit ;;
+    *:AIX:*:*)
+	echo rs6000-ibm-aix
+	exit ;;
+    ibmrt:4.4BSD:*|romp-ibm:4.4BSD:*)
+	echo romp-ibm-bsd4.4
+	exit ;;
+    ibmrt:*BSD:*|romp-ibm:BSD:*)            # covers RT/PC BSD and
+	echo romp-ibm-bsd"$UNAME_RELEASE"   # 4.3 with uname added to
+	exit ;;                             # report: romp-ibm BSD 4.3
+    *:BOSX:*:*)
+	echo rs6000-bull-bosx
+	exit ;;
+    DPX/2?00:B.O.S.:*:*)
+	echo m68k-bull-sysv3
+	exit ;;
+    9000/[34]??:4.3bsd:1.*:*)
+	echo m68k-hp-bsd
+	exit ;;
+    hp300:4.4BSD:*:* | 9000/[34]??:4.3bsd:2.*:*)
+	echo m68k-hp-bsd4.4
+	exit ;;
+    9000/[34678]??:HP-UX:*:*)
+	HPUX_REV=$(echo "$UNAME_RELEASE"|sed -e 's/[^.]*.[0B]*//')
+	case "$UNAME_MACHINE" in
+	    9000/31?)            HP_ARCH=m68000 ;;
+	    9000/[34]??)         HP_ARCH=m68k ;;
+	    9000/[678][0-9][0-9])
+		if test -x /usr/bin/getconf; then
+		    sc_cpu_version=$(/usr/bin/getconf SC_CPU_VERSION 2>/dev/null)
+		    sc_kernel_bits=$(/usr/bin/getconf SC_KERNEL_BITS 2>/dev/null)
+		    case "$sc_cpu_version" in
+		      523) HP_ARCH=hppa1.0 ;; # CPU_PA_RISC1_0
+		      528) HP_ARCH=hppa1.1 ;; # CPU_PA_RISC1_1
+		      532)                      # CPU_PA_RISC2_0
+			case "$sc_kernel_bits" in
+			  32) HP_ARCH=hppa2.0n ;;
+			  64) HP_ARCH=hppa2.0w ;;
+			  '') HP_ARCH=hppa2.0 ;;   # HP-UX 10.20
+			esac ;;
+		    esac
+		fi
+		if test "$HP_ARCH" = ""; then
+		    set_cc_for_build
+		    sed 's/^		//' << EOF > "$dummy.c"
+
+		#define _HPUX_SOURCE
+		#include <stdlib.h>
+		#include <unistd.h>
+
+		int main ()
+		{
+		#if defined(_SC_KERNEL_BITS)
+		    long bits = sysconf(_SC_KERNEL_BITS);
+		#endif
+		    long cpu  = sysconf (_SC_CPU_VERSION);
+
+		    switch (cpu)
+			{
+			case CPU_PA_RISC1_0: puts ("hppa1.0"); break;
+			case CPU_PA_RISC1_1: puts ("hppa1.1"); break;
+			case CPU_PA_RISC2_0:
+		#if defined(_SC_KERNEL_BITS)
+			    switch (bits)
+				{
+				case 64: puts ("hppa2.0w"); break;
+				case 32: puts ("hppa2.0n"); break;
+				default: puts ("hppa2.0"); break;
+				} break;
+		#else  /* !defined(_SC_KERNEL_BITS) */
+			    puts ("hppa2.0"); break;
+		#endif
+			default: puts ("hppa1.0"); break;
+			}
+		    exit (0);
+		}
+EOF
+		    (CCOPTS="" $CC_FOR_BUILD -o "$dummy" "$dummy.c" 2>/dev/null) && HP_ARCH=$("$dummy")
+		    test -z "$HP_ARCH" && HP_ARCH=hppa
+		fi ;;
+	esac
+	if test "$HP_ARCH" = hppa2.0w
+	then
+	    set_cc_for_build
+
+	    # hppa2.0w-hp-hpux* has a 64-bit kernel and a compiler generating
+	    # 32-bit code.  hppa64-hp-hpux* has the same kernel and a compiler
+	    # generating 64-bit code.  GNU and HP use different nomenclature:
+	    #
+	    # $ CC_FOR_BUILD=cc ./config.guess
+	    # => hppa2.0w-hp-hpux11.23
+	    # $ CC_FOR_BUILD="cc +DA2.0w" ./config.guess
+	    # => hppa64-hp-hpux11.23
+
+	    if echo __LP64__ | (CCOPTS="" $CC_FOR_BUILD -E - 2>/dev/null) |
+		grep -q __LP64__
+	    then
+		HP_ARCH=hppa2.0w
+	    else
+		HP_ARCH=hppa64
+	    fi
+	fi
+	echo "$HP_ARCH"-hp-hpux"$HPUX_REV"
+	exit ;;
+    ia64:HP-UX:*:*)
+	HPUX_REV=$(echo "$UNAME_RELEASE"|sed -e 's/[^.]*.[0B]*//')
+	echo ia64-hp-hpux"$HPUX_REV"
+	exit ;;
+    3050*:HI-UX:*:*)
+	set_cc_for_build
+	sed 's/^	//' << EOF > "$dummy.c"
+	#include <unistd.h>
+	int
+	main ()
+	{
+	  long cpu = sysconf (_SC_CPU_VERSION);
+	  /* The order matters, because CPU_IS_HP_MC68K erroneously returns
+	     true for CPU_PA_RISC1_0.  CPU_IS_PA_RISC returns correct
+	     results, however.  */
+	  if (CPU_IS_PA_RISC (cpu))
+	    {
+	      switch (cpu)
+		{
+		  case CPU_PA_RISC1_0: puts ("hppa1.0-hitachi-hiuxwe2"); break;
+		  case CPU_PA_RISC1_1: puts ("hppa1.1-hitachi-hiuxwe2"); break;
+		  case CPU_PA_RISC2_0: puts ("hppa2.0-hitachi-hiuxwe2"); break;
+		  default: puts ("hppa-hitachi-hiuxwe2"); break;
+		}
+	    }
+	  else if (CPU_IS_HP_MC68K (cpu))
+	    puts ("m68k-hitachi-hiuxwe2");
+	  else puts ("unknown-hitachi-hiuxwe2");
+	  exit (0);
+	}
+EOF
+	$CC_FOR_BUILD -o "$dummy" "$dummy.c" && SYSTEM_NAME=$("$dummy") &&
+		{ echo "$SYSTEM_NAME"; exit; }
+	echo unknown-hitachi-hiuxwe2
+	exit ;;
+    9000/7??:4.3bsd:*:* | 9000/8?[79]:4.3bsd:*:*)
+	echo hppa1.1-hp-bsd
+	exit ;;
+    9000/8??:4.3bsd:*:*)
+	echo hppa1.0-hp-bsd
+	exit ;;
+    *9??*:MPE/iX:*:* | *3000*:MPE/iX:*:*)
+	echo hppa1.0-hp-mpeix
+	exit ;;
+    hp7??:OSF1:*:* | hp8?[79]:OSF1:*:*)
+	echo hppa1.1-hp-osf
+	exit ;;
+    hp8??:OSF1:*:*)
+	echo hppa1.0-hp-osf
+	exit ;;
+    i*86:OSF1:*:*)
+	if test -x /usr/sbin/sysversion ; then
+	    echo "$UNAME_MACHINE"-unknown-osf1mk
+	else
+	    echo "$UNAME_MACHINE"-unknown-osf1
+	fi
+	exit ;;
+    parisc*:Lites*:*:*)
+	echo hppa1.1-hp-lites
+	exit ;;
+    C1*:ConvexOS:*:* | convex:ConvexOS:C1*:*)
+	echo c1-convex-bsd
+	exit ;;
+    C2*:ConvexOS:*:* | convex:ConvexOS:C2*:*)
+	if getsysinfo -f scalar_acc
+	then echo c32-convex-bsd
+	else echo c2-convex-bsd
+	fi
+	exit ;;
+    C34*:ConvexOS:*:* | convex:ConvexOS:C34*:*)
+	echo c34-convex-bsd
+	exit ;;
+    C38*:ConvexOS:*:* | convex:ConvexOS:C38*:*)
+	echo c38-convex-bsd
+	exit ;;
+    C4*:ConvexOS:*:* | convex:ConvexOS:C4*:*)
+	echo c4-convex-bsd
+	exit ;;
+    CRAY*Y-MP:*:*:*)
+	echo ymp-cray-unicos"$UNAME_RELEASE" | sed -e 's/\.[^.]*$/.X/'
+	exit ;;
+    CRAY*[A-Z]90:*:*:*)
+	echo "$UNAME_MACHINE"-cray-unicos"$UNAME_RELEASE" \
+	| sed -e 's/CRAY.*\([A-Z]90\)/\1/' \
+	      -e y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/ \
+	      -e 's/\.[^.]*$/.X/'
+	exit ;;
+    CRAY*TS:*:*:*)
+	echo t90-cray-unicos"$UNAME_RELEASE" | sed -e 's/\.[^.]*$/.X/'
+	exit ;;
+    CRAY*T3E:*:*:*)
+	echo alphaev5-cray-unicosmk"$UNAME_RELEASE" | sed -e 's/\.[^.]*$/.X/'
+	exit ;;
+    CRAY*SV1:*:*:*)
+	echo sv1-cray-unicos"$UNAME_RELEASE" | sed -e 's/\.[^.]*$/.X/'
+	exit ;;
+    *:UNICOS/mp:*:*)
+	echo craynv-cray-unicosmp"$UNAME_RELEASE" | sed -e 's/\.[^.]*$/.X/'
+	exit ;;
+    F30[01]:UNIX_System_V:*:* | F700:UNIX_System_V:*:*)
+	FUJITSU_PROC=$(uname -m | tr ABCDEFGHIJKLMNOPQRSTUVWXYZ abcdefghijklmnopqrstuvwxyz)
+	FUJITSU_SYS=$(uname -p | tr ABCDEFGHIJKLMNOPQRSTUVWXYZ abcdefghijklmnopqrstuvwxyz | sed -e 's/\///')
+	FUJITSU_REL=$(echo "$UNAME_RELEASE" | sed -e 's/ /_/')
+	echo "${FUJITSU_PROC}-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}"
+	exit ;;
+    5000:UNIX_System_V:4.*:*)
+	FUJITSU_SYS=$(uname -p | tr ABCDEFGHIJKLMNOPQRSTUVWXYZ abcdefghijklmnopqrstuvwxyz | sed -e 's/\///')
+	FUJITSU_REL=$(echo "$UNAME_RELEASE" | tr ABCDEFGHIJKLMNOPQRSTUVWXYZ abcdefghijklmnopqrstuvwxyz | sed -e 's/ /_/')
+	echo "sparc-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}"
+	exit ;;
+    i*86:BSD/386:*:* | i*86:BSD/OS:*:* | *:Ascend\ Embedded/OS:*:*)
+	echo "$UNAME_MACHINE"-pc-bsdi"$UNAME_RELEASE"
+	exit ;;
+    sparc*:BSD/OS:*:*)
+	echo sparc-unknown-bsdi"$UNAME_RELEASE"
+	exit ;;
+    *:BSD/OS:*:*)
+	echo "$UNAME_MACHINE"-unknown-bsdi"$UNAME_RELEASE"
+	exit ;;
+    arm:FreeBSD:*:*)
+	UNAME_PROCESSOR=$(uname -p)
+	set_cc_for_build
+	if echo __ARM_PCS_VFP | $CC_FOR_BUILD -E - 2>/dev/null \
+	    | grep -q __ARM_PCS_VFP
+	then
+	    echo "${UNAME_PROCESSOR}"-unknown-freebsd"$(echo ${UNAME_RELEASE}|sed -e 's/[-(].*//')"-gnueabi
+	else
+	    echo "${UNAME_PROCESSOR}"-unknown-freebsd"$(echo ${UNAME_RELEASE}|sed -e 's/[-(].*//')"-gnueabihf
+	fi
+	exit ;;
+    *:FreeBSD:*:*)
+	UNAME_PROCESSOR=$(/usr/bin/uname -p)
+	case "$UNAME_PROCESSOR" in
+	    amd64)
+		UNAME_PROCESSOR=x86_64 ;;
+	    i386)
+		UNAME_PROCESSOR=i586 ;;
+	esac
+	echo "$UNAME_PROCESSOR"-unknown-freebsd"$(echo "$UNAME_RELEASE"|sed -e 's/[-(].*//')"
+	exit ;;
+    i*:CYGWIN*:*)
+	echo "$UNAME_MACHINE"-pc-cygwin
+	exit ;;
+    *:MINGW64*:*)
+	echo "$UNAME_MACHINE"-pc-mingw64
+	exit ;;
+    *:MINGW*:*)
+	echo "$UNAME_MACHINE"-pc-mingw32
+	exit ;;
+    *:MSYS*:*)
+	echo "$UNAME_MACHINE"-pc-msys
+	exit ;;
+    i*:PW*:*)
+	echo "$UNAME_MACHINE"-pc-pw32
+	exit ;;
+    *:Interix*:*)
+	case "$UNAME_MACHINE" in
+	    x86)
+		echo i586-pc-interix"$UNAME_RELEASE"
+		exit ;;
+	    authenticamd | genuineintel | EM64T)
+		echo x86_64-unknown-interix"$UNAME_RELEASE"
+		exit ;;
+	    IA64)
+		echo ia64-unknown-interix"$UNAME_RELEASE"
+		exit ;;
+	esac ;;
+    i*:UWIN*:*)
+	echo "$UNAME_MACHINE"-pc-uwin
+	exit ;;
+    amd64:CYGWIN*:*:* | x86_64:CYGWIN*:*:*)
+	echo x86_64-pc-cygwin
+	exit ;;
+    prep*:SunOS:5.*:*)
+	echo powerpcle-unknown-solaris2"$(echo "$UNAME_RELEASE"|sed -e 's/[^.]*//')"
+	exit ;;
+    *:GNU:*:*)
+	# the GNU system
+	echo "$(echo "$UNAME_MACHINE"|sed -e 's,[-/].*$,,')-unknown-$LIBC$(echo "$UNAME_RELEASE"|sed -e 's,/.*$,,')"
+	exit ;;
+    *:GNU/*:*:*)
+	# other systems with GNU libc and userland
+	echo "$UNAME_MACHINE-unknown-$(echo "$UNAME_SYSTEM" | sed 's,^[^/]*/,,' | tr "[:upper:]" "[:lower:]")$(echo "$UNAME_RELEASE"|sed -e 's/[-(].*//')-$LIBC"
+	exit ;;
+    *:Minix:*:*)
+	echo "$UNAME_MACHINE"-unknown-minix
+	exit ;;
+    aarch64:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    aarch64_be:Linux:*:*)
+	UNAME_MACHINE=aarch64_be
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    alpha:Linux:*:*)
+	case $(sed -n '/^cpu model/s/^.*: \(.*\)/\1/p' /proc/cpuinfo 2>/dev/null) in
+	  EV5)   UNAME_MACHINE=alphaev5 ;;
+	  EV56)  UNAME_MACHINE=alphaev56 ;;
+	  PCA56) UNAME_MACHINE=alphapca56 ;;
+	  PCA57) UNAME_MACHINE=alphapca56 ;;
+	  EV6)   UNAME_MACHINE=alphaev6 ;;
+	  EV67)  UNAME_MACHINE=alphaev67 ;;
+	  EV68*) UNAME_MACHINE=alphaev68 ;;
+	esac
+	objdump --private-headers /bin/sh | grep -q ld.so.1
+	if test "$?" = 0 ; then LIBC=gnulibc1 ; fi
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    arc:Linux:*:* | arceb:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    arm*:Linux:*:*)
+	set_cc_for_build
+	if echo __ARM_EABI__ | $CC_FOR_BUILD -E - 2>/dev/null \
+	    | grep -q __ARM_EABI__
+	then
+	    echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	else
+	    if echo __ARM_PCS_VFP | $CC_FOR_BUILD -E - 2>/dev/null \
+		| grep -q __ARM_PCS_VFP
+	    then
+		echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"eabi
+	    else
+		echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"eabihf
+	    fi
+	fi
+	exit ;;
+    avr32*:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    cris:Linux:*:*)
+	echo "$UNAME_MACHINE"-axis-linux-"$LIBC"
+	exit ;;
+    crisv32:Linux:*:*)
+	echo "$UNAME_MACHINE"-axis-linux-"$LIBC"
+	exit ;;
+    e2k:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    frv:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    hexagon:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    i*86:Linux:*:*)
+	echo "$UNAME_MACHINE"-pc-linux-"$LIBC"
+	exit ;;
+    ia64:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    k1om:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    loongarch32:Linux:*:* | loongarch64:Linux:*:* | loongarchx32:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    m32r*:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    m68*:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    mips:Linux:*:* | mips64:Linux:*:*)
+	set_cc_for_build
+	IS_GLIBC=0
+	test x"${LIBC}" = xgnu && IS_GLIBC=1
+	sed 's/^	//' << EOF > "$dummy.c"
+	#undef CPU
+	#undef mips
+	#undef mipsel
+	#undef mips64
+	#undef mips64el
+	#if ${IS_GLIBC} && defined(_ABI64)
+	LIBCABI=gnuabi64
+	#else
+	#if ${IS_GLIBC} && defined(_ABIN32)
+	LIBCABI=gnuabin32
+	#else
+	LIBCABI=${LIBC}
+	#endif
+	#endif
+
+	#if ${IS_GLIBC} && defined(__mips64) && defined(__mips_isa_rev) && __mips_isa_rev>=6
+	CPU=mipsisa64r6
+	#else
+	#if ${IS_GLIBC} && !defined(__mips64) && defined(__mips_isa_rev) && __mips_isa_rev>=6
+	CPU=mipsisa32r6
+	#else
+	#if defined(__mips64)
+	CPU=mips64
+	#else
+	CPU=mips
+	#endif
+	#endif
+	#endif
+
+	#if defined(__MIPSEL__) || defined(__MIPSEL) || defined(_MIPSEL) || defined(MIPSEL)
+	MIPS_ENDIAN=el
+	#else
+	#if defined(__MIPSEB__) || defined(__MIPSEB) || defined(_MIPSEB) || defined(MIPSEB)
+	MIPS_ENDIAN=
+	#else
+	MIPS_ENDIAN=
+	#endif
+	#endif
+EOF
+	eval "$($CC_FOR_BUILD -E "$dummy.c" 2>/dev/null | grep '^CPU\|^MIPS_ENDIAN\|^LIBCABI')"
+	test "x$CPU" != x && { echo "$CPU${MIPS_ENDIAN}-unknown-linux-$LIBCABI"; exit; }
+	;;
+    mips64el:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    openrisc*:Linux:*:*)
+	echo or1k-unknown-linux-"$LIBC"
+	exit ;;
+    or32:Linux:*:* | or1k*:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    padre:Linux:*:*)
+	echo sparc-unknown-linux-"$LIBC"
+	exit ;;
+    parisc64:Linux:*:* | hppa64:Linux:*:*)
+	echo hppa64-unknown-linux-"$LIBC"
+	exit ;;
+    parisc:Linux:*:* | hppa:Linux:*:*)
+	# Look for CPU level
+	case $(grep '^cpu[^a-z]*:' /proc/cpuinfo 2>/dev/null | cut -d' ' -f2) in
+	  PA7*) echo hppa1.1-unknown-linux-"$LIBC" ;;
+	  PA8*) echo hppa2.0-unknown-linux-"$LIBC" ;;
+	  *)    echo hppa-unknown-linux-"$LIBC" ;;
+	esac
+	exit ;;
+    ppc64:Linux:*:*)
+	echo powerpc64-unknown-linux-"$LIBC"
+	exit ;;
+    ppc:Linux:*:*)
+	echo powerpc-unknown-linux-"$LIBC"
+	exit ;;
+    ppc64le:Linux:*:*)
+	echo powerpc64le-unknown-linux-"$LIBC"
+	exit ;;
+    ppcle:Linux:*:*)
+	echo powerpcle-unknown-linux-"$LIBC"
+	exit ;;
+    riscv32:Linux:*:* | riscv32be:Linux:*:* | riscv64:Linux:*:* | riscv64be:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    s390:Linux:*:* | s390x:Linux:*:*)
+	echo "$UNAME_MACHINE"-ibm-linux-"$LIBC"
+	exit ;;
+    sh64*:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    sh*:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    sparc:Linux:*:* | sparc64:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    tile*:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    vax:Linux:*:*)
+	echo "$UNAME_MACHINE"-dec-linux-"$LIBC"
+	exit ;;
+    x86_64:Linux:*:*)
+	set_cc_for_build
+	LIBCABI=$LIBC
+	if test "$CC_FOR_BUILD" != no_compiler_found; then
+	    if (echo '#ifdef __ILP32__'; echo IS_X32; echo '#endif') | \
+		(CCOPTS="" $CC_FOR_BUILD -E - 2>/dev/null) | \
+		grep IS_X32 >/dev/null
+	    then
+		LIBCABI="$LIBC"x32
+	    fi
+	fi
+	echo "$UNAME_MACHINE"-pc-linux-"$LIBCABI"
+	exit ;;
+    xtensa*:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    i*86:DYNIX/ptx:4*:*)
+	# ptx 4.0 does uname -s correctly, with DYNIX/ptx in there.
+	# earlier versions are messed up and put the nodename in both
+	# sysname and nodename.
+	echo i386-sequent-sysv4
+	exit ;;
+    i*86:UNIX_SV:4.2MP:2.*)
+	# Unixware is an offshoot of SVR4, but it has its own version
+	# number series starting with 2...
+	# I am not positive that other SVR4 systems won't match this,
+	# I just have to hope.  -- rms.
+	# Use sysv4.2uw... so that sysv4* matches it.
+	echo "$UNAME_MACHINE"-pc-sysv4.2uw"$UNAME_VERSION"
+	exit ;;
+    i*86:OS/2:*:*)
+	# If we were able to find `uname', then EMX Unix compatibility
+	# is probably installed.
+	echo "$UNAME_MACHINE"-pc-os2-emx
+	exit ;;
+    i*86:XTS-300:*:STOP)
+	echo "$UNAME_MACHINE"-unknown-stop
+	exit ;;
+    i*86:atheos:*:*)
+	echo "$UNAME_MACHINE"-unknown-atheos
+	exit ;;
+    i*86:syllable:*:*)
+	echo "$UNAME_MACHINE"-pc-syllable
+	exit ;;
+    i*86:LynxOS:2.*:* | i*86:LynxOS:3.[01]*:* | i*86:LynxOS:4.[02]*:*)
+	echo i386-unknown-lynxos"$UNAME_RELEASE"
+	exit ;;
+    i*86:*DOS:*:*)
+	echo "$UNAME_MACHINE"-pc-msdosdjgpp
+	exit ;;
+    i*86:*:4.*:*)
+	UNAME_REL=$(echo "$UNAME_RELEASE" | sed 's/\/MP$//')
+	if grep Novell /usr/include/link.h >/dev/null 2>/dev/null; then
+		echo "$UNAME_MACHINE"-univel-sysv"$UNAME_REL"
+	else
+		echo "$UNAME_MACHINE"-pc-sysv"$UNAME_REL"
+	fi
+	exit ;;
+    i*86:*:5:[678]*)
+	# UnixWare 7.x, OpenUNIX and OpenServer 6.
+	case $(/bin/uname -X | grep "^Machine") in
+	    *486*)	     UNAME_MACHINE=i486 ;;
+	    *Pentium)	     UNAME_MACHINE=i586 ;;
+	    *Pent*|*Celeron) UNAME_MACHINE=i686 ;;
+	esac
+	echo "$UNAME_MACHINE-unknown-sysv${UNAME_RELEASE}${UNAME_SYSTEM}${UNAME_VERSION}"
+	exit ;;
+    i*86:*:3.2:*)
+	if test -f /usr/options/cb.name; then
+		UNAME_REL=$(sed -n 's/.*Version //p' </usr/options/cb.name)
+		echo "$UNAME_MACHINE"-pc-isc"$UNAME_REL"
+	elif /bin/uname -X 2>/dev/null >/dev/null ; then
+		UNAME_REL=$( (/bin/uname -X|grep Release|sed -e 's/.*= //'))
+		(/bin/uname -X|grep i80486 >/dev/null) && UNAME_MACHINE=i486
+		(/bin/uname -X|grep '^Machine.*Pentium' >/dev/null) \
+			&& UNAME_MACHINE=i586
+		(/bin/uname -X|grep '^Machine.*Pent *II' >/dev/null) \
+			&& UNAME_MACHINE=i686
+		(/bin/uname -X|grep '^Machine.*Pentium Pro' >/dev/null) \
+			&& UNAME_MACHINE=i686
+		echo "$UNAME_MACHINE"-pc-sco"$UNAME_REL"
+	else
+		echo "$UNAME_MACHINE"-pc-sysv32
+	fi
+	exit ;;
+    pc:*:*:*)
+	# Left here for compatibility:
+	# uname -m prints for DJGPP always 'pc', but it prints nothing about
+	# the processor, so we play safe by assuming i586.
+	# Note: whatever this is, it MUST be the same as what config.sub
+	# prints for the "djgpp" host, or else GDB configure will decide that
+	# this is a cross-build.
+	echo i586-pc-msdosdjgpp
+	exit ;;
+    Intel:Mach:3*:*)
+	echo i386-pc-mach3
+	exit ;;
+    paragon:*:*:*)
+	echo i860-intel-osf1
+	exit ;;
+    i860:*:4.*:*) # i860-SVR4
+	if grep Stardent /usr/include/sys/uadmin.h >/dev/null 2>&1 ; then
+	  echo i860-stardent-sysv"$UNAME_RELEASE" # Stardent Vistra i860-SVR4
+	else # Add other i860-SVR4 vendors below as they are discovered.
+	  echo i860-unknown-sysv"$UNAME_RELEASE"  # Unknown i860-SVR4
+	fi
+	exit ;;
+    mini*:CTIX:SYS*5:*)
+	# "miniframe"
+	echo m68010-convergent-sysv
+	exit ;;
+    mc68k:UNIX:SYSTEM5:3.51m)
+	echo m68k-convergent-sysv
+	exit ;;
+    M680?0:D-NIX:5.3:*)
+	echo m68k-diab-dnix
+	exit ;;
+    M68*:*:R3V[5678]*:*)
+	test -r /sysV68 && { echo 'm68k-motorola-sysv'; exit; } ;;
+    3[345]??:*:4.0:3.0 | 3[34]??A:*:4.0:3.0 | 3[34]??,*:*:4.0:3.0 | 3[34]??/*:*:4.0:3.0 | 4400:*:4.0:3.0 | 4850:*:4.0:3.0 | SKA40:*:4.0:3.0 | SDS2:*:4.0:3.0 | SHG2:*:4.0:3.0 | S7501*:*:4.0:3.0)
+	OS_REL=''
+	test -r /etc/.relid \
+	&& OS_REL=.$(sed -n 's/[^ ]* [^ ]* \([0-9][0-9]\).*/\1/p' < /etc/.relid)
+	/bin/uname -p 2>/dev/null | grep 86 >/dev/null \
+	  && { echo i486-ncr-sysv4.3"$OS_REL"; exit; }
+	/bin/uname -p 2>/dev/null | /bin/grep entium >/dev/null \
+	  && { echo i586-ncr-sysv4.3"$OS_REL"; exit; } ;;
+    3[34]??:*:4.0:* | 3[34]??,*:*:4.0:*)
+	/bin/uname -p 2>/dev/null | grep 86 >/dev/null \
+	  && { echo i486-ncr-sysv4; exit; } ;;
+    NCR*:*:4.2:* | MPRAS*:*:4.2:*)
+	OS_REL='.3'
+	test -r /etc/.relid \
+	    && OS_REL=.$(sed -n 's/[^ ]* [^ ]* \([0-9][0-9]\).*/\1/p' < /etc/.relid)
+	/bin/uname -p 2>/dev/null | grep 86 >/dev/null \
+	    && { echo i486-ncr-sysv4.3"$OS_REL"; exit; }
+	/bin/uname -p 2>/dev/null | /bin/grep entium >/dev/null \
+	    && { echo i586-ncr-sysv4.3"$OS_REL"; exit; }
+	/bin/uname -p 2>/dev/null | /bin/grep pteron >/dev/null \
+	    && { echo i586-ncr-sysv4.3"$OS_REL"; exit; } ;;
+    m68*:LynxOS:2.*:* | m68*:LynxOS:3.0*:*)
+	echo m68k-unknown-lynxos"$UNAME_RELEASE"
+	exit ;;
+    mc68030:UNIX_System_V:4.*:*)
+	echo m68k-atari-sysv4
+	exit ;;
+    TSUNAMI:LynxOS:2.*:*)
+	echo sparc-unknown-lynxos"$UNAME_RELEASE"
+	exit ;;
+    rs6000:LynxOS:2.*:*)
+	echo rs6000-unknown-lynxos"$UNAME_RELEASE"
+	exit ;;
+    PowerPC:LynxOS:2.*:* | PowerPC:LynxOS:3.[01]*:* | PowerPC:LynxOS:4.[02]*:*)
+	echo powerpc-unknown-lynxos"$UNAME_RELEASE"
+	exit ;;
+    SM[BE]S:UNIX_SV:*:*)
+	echo mips-dde-sysv"$UNAME_RELEASE"
+	exit ;;
+    RM*:ReliantUNIX-*:*:*)
+	echo mips-sni-sysv4
+	exit ;;
+    RM*:SINIX-*:*:*)
+	echo mips-sni-sysv4
+	exit ;;
+    *:SINIX-*:*:*)
+	if uname -p 2>/dev/null >/dev/null ; then
+		UNAME_MACHINE=$( (uname -p) 2>/dev/null)
+		echo "$UNAME_MACHINE"-sni-sysv4
+	else
+		echo ns32k-sni-sysv
+	fi
+	exit ;;
+    PENTIUM:*:4.0*:*)	# Unisys `ClearPath HMP IX 4000' SVR4/MP effort
+			# says <Richard.M.Bartel@ccMail.Census.GOV>
+	echo i586-unisys-sysv4
+	exit ;;
+    *:UNIX_System_V:4*:FTX*)
+	# From Gerald Hewes <hewes@openmarket.com>.
+	# How about differentiating between stratus architectures? -djm
+	echo hppa1.1-stratus-sysv4
+	exit ;;
+    *:*:*:FTX*)
+	# From seanf@swdc.stratus.com.
+	echo i860-stratus-sysv4
+	exit ;;
+    i*86:VOS:*:*)
+	# From Paul.Green@stratus.com.
+	echo "$UNAME_MACHINE"-stratus-vos
+	exit ;;
+    *:VOS:*:*)
+	# From Paul.Green@stratus.com.
+	echo hppa1.1-stratus-vos
+	exit ;;
+    mc68*:A/UX:*:*)
+	echo m68k-apple-aux"$UNAME_RELEASE"
+	exit ;;
+    news*:NEWS-OS:6*:*)
+	echo mips-sony-newsos6
+	exit ;;
+    R[34]000:*System_V*:*:* | R4000:UNIX_SYSV:*:* | R*000:UNIX_SV:*:*)
+	if test -d /usr/nec; then
+		echo mips-nec-sysv"$UNAME_RELEASE"
+	else
+		echo mips-unknown-sysv"$UNAME_RELEASE"
+	fi
+	exit ;;
+    BeBox:BeOS:*:*)	# BeOS running on hardware made by Be, PPC only.
+	echo powerpc-be-beos
+	exit ;;
+    BeMac:BeOS:*:*)	# BeOS running on Mac or Mac clone, PPC only.
+	echo powerpc-apple-beos
+	exit ;;
+    BePC:BeOS:*:*)	# BeOS running on Intel PC compatible.
+	echo i586-pc-beos
+	exit ;;
+    BePC:Haiku:*:*)	# Haiku running on Intel PC compatible.
+	echo i586-pc-haiku
+	exit ;;
+    x86_64:Haiku:*:*)
+	echo x86_64-unknown-haiku
+	exit ;;
+    SX-4:SUPER-UX:*:*)
+	echo sx4-nec-superux"$UNAME_RELEASE"
+	exit ;;
+    SX-5:SUPER-UX:*:*)
+	echo sx5-nec-superux"$UNAME_RELEASE"
+	exit ;;
+    SX-6:SUPER-UX:*:*)
+	echo sx6-nec-superux"$UNAME_RELEASE"
+	exit ;;
+    SX-7:SUPER-UX:*:*)
+	echo sx7-nec-superux"$UNAME_RELEASE"
+	exit ;;
+    SX-8:SUPER-UX:*:*)
+	echo sx8-nec-superux"$UNAME_RELEASE"
+	exit ;;
+    SX-8R:SUPER-UX:*:*)
+	echo sx8r-nec-superux"$UNAME_RELEASE"
+	exit ;;
+    SX-ACE:SUPER-UX:*:*)
+	echo sxace-nec-superux"$UNAME_RELEASE"
+	exit ;;
+    Power*:Rhapsody:*:*)
+	echo powerpc-apple-rhapsody"$UNAME_RELEASE"
+	exit ;;
+    *:Rhapsody:*:*)
+	echo "$UNAME_MACHINE"-apple-rhapsody"$UNAME_RELEASE"
+	exit ;;
+    arm64:Darwin:*:*)
+	echo aarch64-apple-darwin"$UNAME_RELEASE"
+	exit ;;
+    *:Darwin:*:*)
+	UNAME_PROCESSOR=$(uname -p)
+	case $UNAME_PROCESSOR in
+	    unknown) UNAME_PROCESSOR=powerpc ;;
+	esac
+	if command -v xcode-select > /dev/null 2> /dev/null && \
+		! xcode-select --print-path > /dev/null 2> /dev/null ; then
+	    # Avoid executing cc if there is no toolchain installed as
+	    # cc will be a stub that puts up a graphical alert
+	    # prompting the user to install developer tools.
+	    CC_FOR_BUILD=no_compiler_found
+	else
+	    set_cc_for_build
+	fi
+	if test "$CC_FOR_BUILD" != no_compiler_found; then
+	    if (echo '#ifdef __LP64__'; echo IS_64BIT_ARCH; echo '#endif') | \
+		   (CCOPTS="" $CC_FOR_BUILD -E - 2>/dev/null) | \
+		   grep IS_64BIT_ARCH >/dev/null
+	    then
+		case $UNAME_PROCESSOR in
+		    i386) UNAME_PROCESSOR=x86_64 ;;
+		    powerpc) UNAME_PROCESSOR=powerpc64 ;;
+		esac
+	    fi
+	    # On 10.4-10.6 one might compile for PowerPC via gcc -arch ppc
+	    if (echo '#ifdef __POWERPC__'; echo IS_PPC; echo '#endif') | \
+		   (CCOPTS="" $CC_FOR_BUILD -E - 2>/dev/null) | \
+		   grep IS_PPC >/dev/null
+	    then
+		UNAME_PROCESSOR=powerpc
+	    fi
+	elif test "$UNAME_PROCESSOR" = i386 ; then
+	    # uname -m returns i386 or x86_64
+	    UNAME_PROCESSOR=$UNAME_MACHINE
+	fi
+	echo "$UNAME_PROCESSOR"-apple-darwin"$UNAME_RELEASE"
+	exit ;;
+    *:procnto*:*:* | *:QNX:[0123456789]*:*)
+	UNAME_PROCESSOR=$(uname -p)
+	if test "$UNAME_PROCESSOR" = x86; then
+		UNAME_PROCESSOR=i386
+		UNAME_MACHINE=pc
+	fi
+	echo "$UNAME_PROCESSOR"-"$UNAME_MACHINE"-nto-qnx"$UNAME_RELEASE"
+	exit ;;
+    *:QNX:*:4*)
+	echo i386-pc-qnx
+	exit ;;
+    NEO-*:NONSTOP_KERNEL:*:*)
+	echo neo-tandem-nsk"$UNAME_RELEASE"
+	exit ;;
+    NSE-*:NONSTOP_KERNEL:*:*)
+	echo nse-tandem-nsk"$UNAME_RELEASE"
+	exit ;;
+    NSR-*:NONSTOP_KERNEL:*:*)
+	echo nsr-tandem-nsk"$UNAME_RELEASE"
+	exit ;;
+    NSV-*:NONSTOP_KERNEL:*:*)
+	echo nsv-tandem-nsk"$UNAME_RELEASE"
+	exit ;;
+    NSX-*:NONSTOP_KERNEL:*:*)
+	echo nsx-tandem-nsk"$UNAME_RELEASE"
+	exit ;;
+    *:NonStop-UX:*:*)
+	echo mips-compaq-nonstopux
+	exit ;;
+    BS2000:POSIX*:*:*)
+	echo bs2000-siemens-sysv
+	exit ;;
+    DS/*:UNIX_System_V:*:*)
+	echo "$UNAME_MACHINE"-"$UNAME_SYSTEM"-"$UNAME_RELEASE"
+	exit ;;
+    *:Plan9:*:*)
+	# "uname -m" is not consistent, so use $cputype instead. 386
+	# is converted to i386 for consistency with other x86
+	# operating systems.
+	# shellcheck disable=SC2154
+	if test "$cputype" = 386; then
+	    UNAME_MACHINE=i386
+	else
+	    UNAME_MACHINE="$cputype"
+	fi
+	echo "$UNAME_MACHINE"-unknown-plan9
+	exit ;;
+    *:TOPS-10:*:*)
+	echo pdp10-unknown-tops10
+	exit ;;
+    *:TENEX:*:*)
+	echo pdp10-unknown-tenex
+	exit ;;
+    KS10:TOPS-20:*:* | KL10:TOPS-20:*:* | TYPE4:TOPS-20:*:*)
+	echo pdp10-dec-tops20
+	exit ;;
+    XKL-1:TOPS-20:*:* | TYPE5:TOPS-20:*:*)
+	echo pdp10-xkl-tops20
+	exit ;;
+    *:TOPS-20:*:*)
+	echo pdp10-unknown-tops20
+	exit ;;
+    *:ITS:*:*)
+	echo pdp10-unknown-its
+	exit ;;
+    SEI:*:*:SEIUX)
+	echo mips-sei-seiux"$UNAME_RELEASE"
+	exit ;;
+    *:DragonFly:*:*)
+	echo "$UNAME_MACHINE"-unknown-dragonfly"$(echo "$UNAME_RELEASE"|sed -e 's/[-(].*//')"
+	exit ;;
+    *:*VMS:*:*)
+	UNAME_MACHINE=$( (uname -p) 2>/dev/null)
+	case "$UNAME_MACHINE" in
+	    A*) echo alpha-dec-vms ; exit ;;
+	    I*) echo ia64-dec-vms ; exit ;;
+	    V*) echo vax-dec-vms ; exit ;;
+	esac ;;
+    *:XENIX:*:SysV)
+	echo i386-pc-xenix
+	exit ;;
+    i*86:skyos:*:*)
+	echo "$UNAME_MACHINE"-pc-skyos"$(echo "$UNAME_RELEASE" | sed -e 's/ .*$//')"
+	exit ;;
+    i*86:rdos:*:*)
+	echo "$UNAME_MACHINE"-pc-rdos
+	exit ;;
+    *:AROS:*:*)
+	echo "$UNAME_MACHINE"-unknown-aros
+	exit ;;
+    x86_64:VMkernel:*:*)
+	echo "$UNAME_MACHINE"-unknown-esx
+	exit ;;
+    amd64:Isilon\ OneFS:*:*)
+	echo x86_64-unknown-onefs
+	exit ;;
+    *:Unleashed:*:*)
+	echo "$UNAME_MACHINE"-unknown-unleashed"$UNAME_RELEASE"
+	exit ;;
+esac
+
+# No uname command or uname output not recognized.
+set_cc_for_build
+cat > "$dummy.c" <<EOF
+#ifdef _SEQUENT_
+#include <sys/types.h>
+#include <sys/utsname.h>
+#endif
+#if defined(ultrix) || defined(_ultrix) || defined(__ultrix) || defined(__ultrix__)
+#if defined (vax) || defined (__vax) || defined (__vax__) || defined(mips) || defined(__mips) || defined(__mips__) || defined(MIPS) || defined(__MIPS__)
+#include <signal.h>
+#if defined(_SIZE_T_) || defined(SIGLOST)
+#include <sys/utsname.h>
+#endif
+#endif
+#endif
+main ()
+{
+#if defined (sony)
+#if defined (MIPSEB)
+  /* BFD wants "bsd" instead of "newsos".  Perhaps BFD should be changed,
+     I don't know....  */
+  printf ("mips-sony-bsd\n"); exit (0);
+#else
+#include <sys/param.h>
+  printf ("m68k-sony-newsos%s\n",
+#ifdef NEWSOS4
+  "4"
+#else
+  ""
+#endif
+  ); exit (0);
+#endif
+#endif
+
+#if defined (NeXT)
+#if !defined (__ARCHITECTURE__)
+#define __ARCHITECTURE__ "m68k"
+#endif
+  int version;
+  version=$( (hostinfo | sed -n 's/.*NeXT Mach \([0-9]*\).*/\1/p') 2>/dev/null);
+  if (version < 4)
+    printf ("%s-next-nextstep%d\n", __ARCHITECTURE__, version);
+  else
+    printf ("%s-next-openstep%d\n", __ARCHITECTURE__, version);
+  exit (0);
+#endif
+
+#if defined (MULTIMAX) || defined (n16)
+#if defined (UMAXV)
+  printf ("ns32k-encore-sysv\n"); exit (0);
+#else
+#if defined (CMU)
+  printf ("ns32k-encore-mach\n"); exit (0);
+#else
+  printf ("ns32k-encore-bsd\n"); exit (0);
+#endif
+#endif
+#endif
+
+#if defined (__386BSD__)
+  printf ("i386-pc-bsd\n"); exit (0);
+#endif
+
+#if defined (sequent)
+#if defined (i386)
+  printf ("i386-sequent-dynix\n"); exit (0);
+#endif
+#if defined (ns32000)
+  printf ("ns32k-sequent-dynix\n"); exit (0);
+#endif
+#endif
+
+#if defined (_SEQUENT_)
+  struct utsname un;
+
+  uname(&un);
+  if (strncmp(un.version, "V2", 2) == 0) {
+    printf ("i386-sequent-ptx2\n"); exit (0);
+  }
+  if (strncmp(un.version, "V1", 2) == 0) { /* XXX is V1 correct? */
+    printf ("i386-sequent-ptx1\n"); exit (0);
+  }
+  printf ("i386-sequent-ptx\n"); exit (0);
+#endif
+
+#if defined (vax)
+#if !defined (ultrix)
+#include <sys/param.h>
+#if defined (BSD)
+#if BSD == 43
+  printf ("vax-dec-bsd4.3\n"); exit (0);
+#else
+#if BSD == 199006
+  printf ("vax-dec-bsd4.3reno\n"); exit (0);
+#else
+  printf ("vax-dec-bsd\n"); exit (0);
+#endif
+#endif
+#else
+  printf ("vax-dec-bsd\n"); exit (0);
+#endif
+#else
+#if defined(_SIZE_T_) || defined(SIGLOST)
+  struct utsname un;
+  uname (&un);
+  printf ("vax-dec-ultrix%s\n", un.release); exit (0);
+#else
+  printf ("vax-dec-ultrix\n"); exit (0);
+#endif
+#endif
+#endif
+#if defined(ultrix) || defined(_ultrix) || defined(__ultrix) || defined(__ultrix__)
+#if defined(mips) || defined(__mips) || defined(__mips__) || defined(MIPS) || defined(__MIPS__)
+#if defined(_SIZE_T_) || defined(SIGLOST)
+  struct utsname *un;
+  uname (&un);
+  printf ("mips-dec-ultrix%s\n", un.release); exit (0);
+#else
+  printf ("mips-dec-ultrix\n"); exit (0);
+#endif
+#endif
+#endif
+
+#if defined (alliant) && defined (i860)
+  printf ("i860-alliant-bsd\n"); exit (0);
+#endif
+
+  exit (1);
+}
+EOF
+
+$CC_FOR_BUILD -o "$dummy" "$dummy.c" 2>/dev/null && SYSTEM_NAME=$($dummy) &&
+	{ echo "$SYSTEM_NAME"; exit; }
+
+# Apollos put the system type in the environment.
+test -d /usr/apollo && { echo "$ISP-apollo-$SYSTYPE"; exit; }
+
+echo "$0: unable to guess system type" >&2
+
+case "$UNAME_MACHINE:$UNAME_SYSTEM" in
+    mips:Linux | mips64:Linux)
+	# If we got here on MIPS GNU/Linux, output extra information.
+	cat >&2 <<EOF
+
+NOTE: MIPS GNU/Linux systems require a C compiler to fully recognize
+the system type. Please install a C compiler and try again.
+EOF
+	;;
+esac
+
+cat >&2 <<EOF
+
+This script (version $timestamp), has failed to recognize the
+operating system you are using. If your script is old, overwrite *all*
+copies of config.guess and config.sub with the latest versions from:
+
+  https://git.savannah.gnu.org/cgit/config.git/plain/config.guess
+and
+  https://git.savannah.gnu.org/cgit/config.git/plain/config.sub
+EOF
+
+year=$(echo $timestamp | sed 's,-.*,,')
+# shellcheck disable=SC2003
+if test "$(expr "$(date +%Y)" - "$year")" -lt 3 ; then
+   cat >&2 <<EOF
+
+If $0 has already been updated, send the following data and any
+information you think might be pertinent to config-patches@gnu.org to
+provide the necessary information to handle your system.
+
+config.guess timestamp = $timestamp
+
+uname -m = $( (uname -m) 2>/dev/null || echo unknown)
+uname -r = $( (uname -r) 2>/dev/null || echo unknown)
+uname -s = $( (uname -s) 2>/dev/null || echo unknown)
+uname -v = $( (uname -v) 2>/dev/null || echo unknown)
+
+/usr/bin/uname -p = $( (/usr/bin/uname -p) 2>/dev/null)
+/bin/uname -X     = $( (/bin/uname -X) 2>/dev/null)
+
+hostinfo               = $( (hostinfo) 2>/dev/null)
+/bin/universe          = $( (/bin/universe) 2>/dev/null)
+/usr/bin/arch -k       = $( (/usr/bin/arch -k) 2>/dev/null)
+/bin/arch              = $( (/bin/arch) 2>/dev/null)
+/usr/bin/oslevel       = $( (/usr/bin/oslevel) 2>/dev/null)
+/usr/convex/getsysinfo = $( (/usr/convex/getsysinfo) 2>/dev/null)
+
+UNAME_MACHINE = "$UNAME_MACHINE"
+UNAME_RELEASE = "$UNAME_RELEASE"
+UNAME_SYSTEM  = "$UNAME_SYSTEM"
+UNAME_VERSION = "$UNAME_VERSION"
+EOF
+fi
+
+exit 1
+
+# Local variables:
+# eval: (add-hook 'before-save-hook 'time-stamp)
+# time-stamp-start: "timestamp='"
+# time-stamp-format: "%:y-%02m-%02d"
+# time-stamp-end: "'"
+# End:
diff --git a/recipes/clustalw/config.sub b/recipes/clustalw/config.sub
new file mode 100644
index 0000000000000..38f3d037a785f
--- /dev/null
+++ b/recipes/clustalw/config.sub
@@ -0,0 +1,1885 @@
+#! /bin/sh
+# Configuration validation subroutine script.
+#   Copyright 1992-2021 Free Software Foundation, Inc.
+
+# shellcheck disable=SC2006,SC2268 # see below for rationale
+
+timestamp='2021-10-27'
+
+# This file is free software; you can redistribute it and/or modify it
+# under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+# General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, see <https://www.gnu.org/licenses/>.
+#
+# As a special exception to the GNU General Public License, if you
+# distribute this file as part of a program that contains a
+# configuration script generated by Autoconf, you may include it under
+# the same distribution terms that you use for the rest of that
+# program.  This Exception is an additional permission under section 7
+# of the GNU General Public License, version 3 ("GPLv3").
+
+
+# Please send patches to <config-patches@gnu.org>.
+#
+# Configuration subroutine to validate and canonicalize a configuration type.
+# Supply the specified configuration type as an argument.
+# If it is invalid, we print an error message on stderr and exit with code 1.
+# Otherwise, we print the canonical config type on stdout and succeed.
+
+# You can get the latest version of this script from:
+# https://git.savannah.gnu.org/cgit/config.git/plain/config.sub
+
+# This file is supposed to be the same for all GNU packages
+# and recognize all the CPU types, system types and aliases
+# that are meaningful with *any* GNU software.
+# Each package is responsible for reporting which valid configurations
+# it does not support.  The user should be able to distinguish
+# a failure to support a valid configuration from a meaningless
+# configuration.
+
+# The goal of this file is to map all the various variations of a given
+# machine specification into a single specification in the form:
+#	CPU_TYPE-MANUFACTURER-OPERATING_SYSTEM
+# or in some cases, the newer four-part form:
+#	CPU_TYPE-MANUFACTURER-KERNEL-OPERATING_SYSTEM
+# It is wrong to echo any other type of specification.
+
+# The "shellcheck disable" line above the timestamp inhibits complaints
+# about features and limitations of the classic Bourne shell that were
+# superseded or lifted in POSIX.  However, this script identifies a wide
+# variety of pre-POSIX systems that do not have POSIX shells at all, and
+# even some reasonably current systems (Solaris 10 as case-in-point) still
+# have a pre-POSIX /bin/sh.
+
+me=`echo "$0" | sed -e 's,.*/,,'`
+
+usage="\
+Usage: $0 [OPTION] CPU-MFR-OPSYS or ALIAS
+
+Canonicalize a configuration name.
+
+Options:
+  -h, --help         print this help, then exit
+  -t, --time-stamp   print date of last modification, then exit
+  -v, --version      print version number, then exit
+
+Report bugs and patches to <config-patches@gnu.org>."
+
+version="\
+GNU config.sub ($timestamp)
+
+Copyright 1992-2021 Free Software Foundation, Inc.
+
+This is free software; see the source for copying conditions.  There is NO
+warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE."
+
+help="
+Try \`$me --help' for more information."
+
+# Parse command line
+while test $# -gt 0 ; do
+  case $1 in
+    --time-stamp | --time* | -t )
+       echo "$timestamp" ; exit ;;
+    --version | -v )
+       echo "$version" ; exit ;;
+    --help | --h* | -h )
+       echo "$usage"; exit ;;
+    -- )     # Stop option processing
+       shift; break ;;
+    - )	# Use stdin as input.
+       break ;;
+    -* )
+       echo "$me: invalid option $1$help" >&2
+       exit 1 ;;
+
+    *local*)
+       # First pass through any local machine types.
+       echo "$1"
+       exit ;;
+
+    * )
+       break ;;
+  esac
+done
+
+case $# in
+ 0) echo "$me: missing argument$help" >&2
+    exit 1;;
+ 1) ;;
+ *) echo "$me: too many arguments$help" >&2
+    exit 1;;
+esac
+
+# Split fields of configuration type
+# shellcheck disable=SC2162
+saved_IFS=$IFS
+IFS="-" read field1 field2 field3 field4 <<EOF
+$1
+EOF
+IFS=$saved_IFS
+
+# Separate into logical components for further validation
+case $1 in
+	*-*-*-*-*)
+		echo Invalid configuration \`"$1"\': more than four components >&2
+		exit 1
+		;;
+	*-*-*-*)
+		basic_machine=$field1-$field2
+		basic_os=$field3-$field4
+		;;
+	*-*-*)
+		# Ambiguous whether COMPANY is present, or skipped and KERNEL-OS is two
+		# parts
+		maybe_os=$field2-$field3
+		case $maybe_os in
+			nto-qnx* | linux-* | uclinux-uclibc* \
+			| uclinux-gnu* | kfreebsd*-gnu* | knetbsd*-gnu* | netbsd*-gnu* \
+			| netbsd*-eabi* | kopensolaris*-gnu* | cloudabi*-eabi* \
+			| storm-chaos* | os2-emx* | rtmk-nova*)
+				basic_machine=$field1
+				basic_os=$maybe_os
+				;;
+			android-linux)
+				basic_machine=$field1-unknown
+				basic_os=linux-android
+				;;
+			*)
+				basic_machine=$field1-$field2
+				basic_os=$field3
+				;;
+		esac
+		;;
+	*-*)
+		# A lone config we happen to match not fitting any pattern
+		case $field1-$field2 in
+			decstation-3100)
+				basic_machine=mips-dec
+				basic_os=
+				;;
+			*-*)
+				# Second component is usually, but not always the OS
+				case $field2 in
+					# Prevent following clause from handling this valid os
+					sun*os*)
+						basic_machine=$field1
+						basic_os=$field2
+						;;
+					zephyr*)
+						basic_machine=$field1-unknown
+						basic_os=$field2
+						;;
+					# Manufacturers
+					dec* | mips* | sequent* | encore* | pc533* | sgi* | sony* \
+					| att* | 7300* | 3300* | delta* | motorola* | sun[234]* \
+					| unicom* | ibm* | next | hp | isi* | apollo | altos* \
+					| convergent* | ncr* | news | 32* | 3600* | 3100* \
+					| hitachi* | c[123]* | convex* | sun | crds | omron* | dg \
+					| ultra | tti* | harris | dolphin | highlevel | gould \
+					| cbm | ns | masscomp | apple | axis | knuth | cray \
+					| microblaze* | sim | cisco \
+					| oki | wec | wrs | winbond)
+						basic_machine=$field1-$field2
+						basic_os=
+						;;
+					*)
+						basic_machine=$field1
+						basic_os=$field2
+						;;
+				esac
+			;;
+		esac
+		;;
+	*)
+		# Convert single-component short-hands not valid as part of
+		# multi-component configurations.
+		case $field1 in
+			386bsd)
+				basic_machine=i386-pc
+				basic_os=bsd
+				;;
+			a29khif)
+				basic_machine=a29k-amd
+				basic_os=udi
+				;;
+			adobe68k)
+				basic_machine=m68010-adobe
+				basic_os=scout
+				;;
+			alliant)
+				basic_machine=fx80-alliant
+				basic_os=
+				;;
+			altos | altos3068)
+				basic_machine=m68k-altos
+				basic_os=
+				;;
+			am29k)
+				basic_machine=a29k-none
+				basic_os=bsd
+				;;
+			amdahl)
+				basic_machine=580-amdahl
+				basic_os=sysv
+				;;
+			amiga)
+				basic_machine=m68k-unknown
+				basic_os=
+				;;
+			amigaos | amigados)
+				basic_machine=m68k-unknown
+				basic_os=amigaos
+				;;
+			amigaunix | amix)
+				basic_machine=m68k-unknown
+				basic_os=sysv4
+				;;
+			apollo68)
+				basic_machine=m68k-apollo
+				basic_os=sysv
+				;;
+			apollo68bsd)
+				basic_machine=m68k-apollo
+				basic_os=bsd
+				;;
+			aros)
+				basic_machine=i386-pc
+				basic_os=aros
+				;;
+			aux)
+				basic_machine=m68k-apple
+				basic_os=aux
+				;;
+			balance)
+				basic_machine=ns32k-sequent
+				basic_os=dynix
+				;;
+			blackfin)
+				basic_machine=bfin-unknown
+				basic_os=linux
+				;;
+			cegcc)
+				basic_machine=arm-unknown
+				basic_os=cegcc
+				;;
+			convex-c1)
+				basic_machine=c1-convex
+				basic_os=bsd
+				;;
+			convex-c2)
+				basic_machine=c2-convex
+				basic_os=bsd
+				;;
+			convex-c32)
+				basic_machine=c32-convex
+				basic_os=bsd
+				;;
+			convex-c34)
+				basic_machine=c34-convex
+				basic_os=bsd
+				;;
+			convex-c38)
+				basic_machine=c38-convex
+				basic_os=bsd
+				;;
+			cray)
+				basic_machine=j90-cray
+				basic_os=unicos
+				;;
+			crds | unos)
+				basic_machine=m68k-crds
+				basic_os=
+				;;
+			da30)
+				basic_machine=m68k-da30
+				basic_os=
+				;;
+			decstation | pmax | pmin | dec3100 | decstatn)
+				basic_machine=mips-dec
+				basic_os=
+				;;
+			delta88)
+				basic_machine=m88k-motorola
+				basic_os=sysv3
+				;;
+			dicos)
+				basic_machine=i686-pc
+				basic_os=dicos
+				;;
+			djgpp)
+				basic_machine=i586-pc
+				basic_os=msdosdjgpp
+				;;
+			ebmon29k)
+				basic_machine=a29k-amd
+				basic_os=ebmon
+				;;
+			es1800 | OSE68k | ose68k | ose | OSE)
+				basic_machine=m68k-ericsson
+				basic_os=ose
+				;;
+			gmicro)
+				basic_machine=tron-gmicro
+				basic_os=sysv
+				;;
+			go32)
+				basic_machine=i386-pc
+				basic_os=go32
+				;;
+			h8300hms)
+				basic_machine=h8300-hitachi
+				basic_os=hms
+				;;
+			h8300xray)
+				basic_machine=h8300-hitachi
+				basic_os=xray
+				;;
+			h8500hms)
+				basic_machine=h8500-hitachi
+				basic_os=hms
+				;;
+			harris)
+				basic_machine=m88k-harris
+				basic_os=sysv3
+				;;
+			hp300 | hp300hpux)
+				basic_machine=m68k-hp
+				basic_os=hpux
+				;;
+			hp300bsd)
+				basic_machine=m68k-hp
+				basic_os=bsd
+				;;
+			hppaosf)
+				basic_machine=hppa1.1-hp
+				basic_os=osf
+				;;
+			hppro)
+				basic_machine=hppa1.1-hp
+				basic_os=proelf
+				;;
+			i386mach)
+				basic_machine=i386-mach
+				basic_os=mach
+				;;
+			isi68 | isi)
+				basic_machine=m68k-isi
+				basic_os=sysv
+				;;
+			m68knommu)
+				basic_machine=m68k-unknown
+				basic_os=linux
+				;;
+			magnum | m3230)
+				basic_machine=mips-mips
+				basic_os=sysv
+				;;
+			merlin)
+				basic_machine=ns32k-utek
+				basic_os=sysv
+				;;
+			mingw64)
+				basic_machine=x86_64-pc
+				basic_os=mingw64
+				;;
+			mingw32)
+				basic_machine=i686-pc
+				basic_os=mingw32
+				;;
+			mingw32ce)
+				basic_machine=arm-unknown
+				basic_os=mingw32ce
+				;;
+			monitor)
+				basic_machine=m68k-rom68k
+				basic_os=coff
+				;;
+			morphos)
+				basic_machine=powerpc-unknown
+				basic_os=morphos
+				;;
+			moxiebox)
+				basic_machine=moxie-unknown
+				basic_os=moxiebox
+				;;
+			msdos)
+				basic_machine=i386-pc
+				basic_os=msdos
+				;;
+			msys)
+				basic_machine=i686-pc
+				basic_os=msys
+				;;
+			mvs)
+				basic_machine=i370-ibm
+				basic_os=mvs
+				;;
+			nacl)
+				basic_machine=le32-unknown
+				basic_os=nacl
+				;;
+			ncr3000)
+				basic_machine=i486-ncr
+				basic_os=sysv4
+				;;
+			netbsd386)
+				basic_machine=i386-pc
+				basic_os=netbsd
+				;;
+			netwinder)
+				basic_machine=armv4l-rebel
+				basic_os=linux
+				;;
+			news | news700 | news800 | news900)
+				basic_machine=m68k-sony
+				basic_os=newsos
+				;;
+			news1000)
+				basic_machine=m68030-sony
+				basic_os=newsos
+				;;
+			necv70)
+				basic_machine=v70-nec
+				basic_os=sysv
+				;;
+			nh3000)
+				basic_machine=m68k-harris
+				basic_os=cxux
+				;;
+			nh[45]000)
+				basic_machine=m88k-harris
+				basic_os=cxux
+				;;
+			nindy960)
+				basic_machine=i960-intel
+				basic_os=nindy
+				;;
+			mon960)
+				basic_machine=i960-intel
+				basic_os=mon960
+				;;
+			nonstopux)
+				basic_machine=mips-compaq
+				basic_os=nonstopux
+				;;
+			os400)
+				basic_machine=powerpc-ibm
+				basic_os=os400
+				;;
+			OSE68000 | ose68000)
+				basic_machine=m68000-ericsson
+				basic_os=ose
+				;;
+			os68k)
+				basic_machine=m68k-none
+				basic_os=os68k
+				;;
+			paragon)
+				basic_machine=i860-intel
+				basic_os=osf
+				;;
+			parisc)
+				basic_machine=hppa-unknown
+				basic_os=linux
+				;;
+			psp)
+				basic_machine=mipsallegrexel-sony
+				basic_os=psp
+				;;
+			pw32)
+				basic_machine=i586-unknown
+				basic_os=pw32
+				;;
+			rdos | rdos64)
+				basic_machine=x86_64-pc
+				basic_os=rdos
+				;;
+			rdos32)
+				basic_machine=i386-pc
+				basic_os=rdos
+				;;
+			rom68k)
+				basic_machine=m68k-rom68k
+				basic_os=coff
+				;;
+			sa29200)
+				basic_machine=a29k-amd
+				basic_os=udi
+				;;
+			sei)
+				basic_machine=mips-sei
+				basic_os=seiux
+				;;
+			sequent)
+				basic_machine=i386-sequent
+				basic_os=
+				;;
+			sps7)
+				basic_machine=m68k-bull
+				basic_os=sysv2
+				;;
+			st2000)
+				basic_machine=m68k-tandem
+				basic_os=
+				;;
+			stratus)
+				basic_machine=i860-stratus
+				basic_os=sysv4
+				;;
+			sun2)
+				basic_machine=m68000-sun
+				basic_os=
+				;;
+			sun2os3)
+				basic_machine=m68000-sun
+				basic_os=sunos3
+				;;
+			sun2os4)
+				basic_machine=m68000-sun
+				basic_os=sunos4
+				;;
+			sun3)
+				basic_machine=m68k-sun
+				basic_os=
+				;;
+			sun3os3)
+				basic_machine=m68k-sun
+				basic_os=sunos3
+				;;
+			sun3os4)
+				basic_machine=m68k-sun
+				basic_os=sunos4
+				;;
+			sun4)
+				basic_machine=sparc-sun
+				basic_os=
+				;;
+			sun4os3)
+				basic_machine=sparc-sun
+				basic_os=sunos3
+				;;
+			sun4os4)
+				basic_machine=sparc-sun
+				basic_os=sunos4
+				;;
+			sun4sol2)
+				basic_machine=sparc-sun
+				basic_os=solaris2
+				;;
+			sun386 | sun386i | roadrunner)
+				basic_machine=i386-sun
+				basic_os=
+				;;
+			sv1)
+				basic_machine=sv1-cray
+				basic_os=unicos
+				;;
+			symmetry)
+				basic_machine=i386-sequent
+				basic_os=dynix
+				;;
+			t3e)
+				basic_machine=alphaev5-cray
+				basic_os=unicos
+				;;
+			t90)
+				basic_machine=t90-cray
+				basic_os=unicos
+				;;
+			toad1)
+				basic_machine=pdp10-xkl
+				basic_os=tops20
+				;;
+			tpf)
+				basic_machine=s390x-ibm
+				basic_os=tpf
+				;;
+			udi29k)
+				basic_machine=a29k-amd
+				basic_os=udi
+				;;
+			ultra3)
+				basic_machine=a29k-nyu
+				basic_os=sym1
+				;;
+			v810 | necv810)
+				basic_machine=v810-nec
+				basic_os=none
+				;;
+			vaxv)
+				basic_machine=vax-dec
+				basic_os=sysv
+				;;
+			vms)
+				basic_machine=vax-dec
+				basic_os=vms
+				;;
+			vsta)
+				basic_machine=i386-pc
+				basic_os=vsta
+				;;
+			vxworks960)
+				basic_machine=i960-wrs
+				basic_os=vxworks
+				;;
+			vxworks68)
+				basic_machine=m68k-wrs
+				basic_os=vxworks
+				;;
+			vxworks29k)
+				basic_machine=a29k-wrs
+				basic_os=vxworks
+				;;
+			xbox)
+				basic_machine=i686-pc
+				basic_os=mingw32
+				;;
+			ymp)
+				basic_machine=ymp-cray
+				basic_os=unicos
+				;;
+			*)
+				basic_machine=$1
+				basic_os=
+				;;
+		esac
+		;;
+esac
+
+# Decode 1-component or ad-hoc basic machines
+case $basic_machine in
+	# Here we handle the default manufacturer of certain CPU types.  It is in
+	# some cases the only manufacturer, in others, it is the most popular.
+	w89k)
+		cpu=hppa1.1
+		vendor=winbond
+		;;
+	op50n)
+		cpu=hppa1.1
+		vendor=oki
+		;;
+	op60c)
+		cpu=hppa1.1
+		vendor=oki
+		;;
+	ibm*)
+		cpu=i370
+		vendor=ibm
+		;;
+	orion105)
+		cpu=clipper
+		vendor=highlevel
+		;;
+	mac | mpw | mac-mpw)
+		cpu=m68k
+		vendor=apple
+		;;
+	pmac | pmac-mpw)
+		cpu=powerpc
+		vendor=apple
+		;;
+
+	# Recognize the various machine names and aliases which stand
+	# for a CPU type and a company and sometimes even an OS.
+	3b1 | 7300 | 7300-att | att-7300 | pc7300 | safari | unixpc)
+		cpu=m68000
+		vendor=att
+		;;
+	3b*)
+		cpu=we32k
+		vendor=att
+		;;
+	bluegene*)
+		cpu=powerpc
+		vendor=ibm
+		basic_os=cnk
+		;;
+	decsystem10* | dec10*)
+		cpu=pdp10
+		vendor=dec
+		basic_os=tops10
+		;;
+	decsystem20* | dec20*)
+		cpu=pdp10
+		vendor=dec
+		basic_os=tops20
+		;;
+	delta | 3300 | motorola-3300 | motorola-delta \
+	      | 3300-motorola | delta-motorola)
+		cpu=m68k
+		vendor=motorola
+		;;
+	dpx2*)
+		cpu=m68k
+		vendor=bull
+		basic_os=sysv3
+		;;
+	encore | umax | mmax)
+		cpu=ns32k
+		vendor=encore
+		;;
+	elxsi)
+		cpu=elxsi
+		vendor=elxsi
+		basic_os=${basic_os:-bsd}
+		;;
+	fx2800)
+		cpu=i860
+		vendor=alliant
+		;;
+	genix)
+		cpu=ns32k
+		vendor=ns
+		;;
+	h3050r* | hiux*)
+		cpu=hppa1.1
+		vendor=hitachi
+		basic_os=hiuxwe2
+		;;
+	hp3k9[0-9][0-9] | hp9[0-9][0-9])
+		cpu=hppa1.0
+		vendor=hp
+		;;
+	hp9k2[0-9][0-9] | hp9k31[0-9])
+		cpu=m68000
+		vendor=hp
+		;;
+	hp9k3[2-9][0-9])
+		cpu=m68k
+		vendor=hp
+		;;
+	hp9k6[0-9][0-9] | hp6[0-9][0-9])
+		cpu=hppa1.0
+		vendor=hp
+		;;
+	hp9k7[0-79][0-9] | hp7[0-79][0-9])
+		cpu=hppa1.1
+		vendor=hp
+		;;
+	hp9k78[0-9] | hp78[0-9])
+		# FIXME: really hppa2.0-hp
+		cpu=hppa1.1
+		vendor=hp
+		;;
+	hp9k8[67]1 | hp8[67]1 | hp9k80[24] | hp80[24] | hp9k8[78]9 | hp8[78]9 | hp9k893 | hp893)
+		# FIXME: really hppa2.0-hp
+		cpu=hppa1.1
+		vendor=hp
+		;;
+	hp9k8[0-9][13679] | hp8[0-9][13679])
+		cpu=hppa1.1
+		vendor=hp
+		;;
+	hp9k8[0-9][0-9] | hp8[0-9][0-9])
+		cpu=hppa1.0
+		vendor=hp
+		;;
+	i*86v32)
+		cpu=`echo "$1" | sed -e 's/86.*/86/'`
+		vendor=pc
+		basic_os=sysv32
+		;;
+	i*86v4*)
+		cpu=`echo "$1" | sed -e 's/86.*/86/'`
+		vendor=pc
+		basic_os=sysv4
+		;;
+	i*86v)
+		cpu=`echo "$1" | sed -e 's/86.*/86/'`
+		vendor=pc
+		basic_os=sysv
+		;;
+	i*86sol2)
+		cpu=`echo "$1" | sed -e 's/86.*/86/'`
+		vendor=pc
+		basic_os=solaris2
+		;;
+	j90 | j90-cray)
+		cpu=j90
+		vendor=cray
+		basic_os=${basic_os:-unicos}
+		;;
+	iris | iris4d)
+		cpu=mips
+		vendor=sgi
+		case $basic_os in
+		    irix*)
+			;;
+		    *)
+			basic_os=irix4
+			;;
+		esac
+		;;
+	miniframe)
+		cpu=m68000
+		vendor=convergent
+		;;
+	*mint | mint[0-9]* | *MiNT | *MiNT[0-9]*)
+		cpu=m68k
+		vendor=atari
+		basic_os=mint
+		;;
+	news-3600 | risc-news)
+		cpu=mips
+		vendor=sony
+		basic_os=newsos
+		;;
+	next | m*-next)
+		cpu=m68k
+		vendor=next
+		case $basic_os in
+		    openstep*)
+		        ;;
+		    nextstep*)
+			;;
+		    ns2*)
+		      basic_os=nextstep2
+			;;
+		    *)
+		      basic_os=nextstep3
+			;;
+		esac
+		;;
+	np1)
+		cpu=np1
+		vendor=gould
+		;;
+	op50n-* | op60c-*)
+		cpu=hppa1.1
+		vendor=oki
+		basic_os=proelf
+		;;
+	pa-hitachi)
+		cpu=hppa1.1
+		vendor=hitachi
+		basic_os=hiuxwe2
+		;;
+	pbd)
+		cpu=sparc
+		vendor=tti
+		;;
+	pbb)
+		cpu=m68k
+		vendor=tti
+		;;
+	pc532)
+		cpu=ns32k
+		vendor=pc532
+		;;
+	pn)
+		cpu=pn
+		vendor=gould
+		;;
+	power)
+		cpu=power
+		vendor=ibm
+		;;
+	ps2)
+		cpu=i386
+		vendor=ibm
+		;;
+	rm[46]00)
+		cpu=mips
+		vendor=siemens
+		;;
+	rtpc | rtpc-*)
+		cpu=romp
+		vendor=ibm
+		;;
+	sde)
+		cpu=mipsisa32
+		vendor=sde
+		basic_os=${basic_os:-elf}
+		;;
+	simso-wrs)
+		cpu=sparclite
+		vendor=wrs
+		basic_os=vxworks
+		;;
+	tower | tower-32)
+		cpu=m68k
+		vendor=ncr
+		;;
+	vpp*|vx|vx-*)
+		cpu=f301
+		vendor=fujitsu
+		;;
+	w65)
+		cpu=w65
+		vendor=wdc
+		;;
+	w89k-*)
+		cpu=hppa1.1
+		vendor=winbond
+		basic_os=proelf
+		;;
+	none)
+		cpu=none
+		vendor=none
+		;;
+	leon|leon[3-9])
+		cpu=sparc
+		vendor=$basic_machine
+		;;
+	leon-*|leon[3-9]-*)
+		cpu=sparc
+		vendor=`echo "$basic_machine" | sed 's/-.*//'`
+		;;
+
+	*-*)
+		# shellcheck disable=SC2162
+		saved_IFS=$IFS
+		IFS="-" read cpu vendor <<EOF
+$basic_machine
+EOF
+		IFS=$saved_IFS
+		;;
+	# We use `pc' rather than `unknown'
+	# because (1) that's what they normally are, and
+	# (2) the word "unknown" tends to confuse beginning users.
+	i*86 | x86_64)
+		cpu=$basic_machine
+		vendor=pc
+		;;
+	# These rules are duplicated from below for sake of the special case above;
+	# i.e. things that normalized to x86 arches should also default to "pc"
+	pc98)
+		cpu=i386
+		vendor=pc
+		;;
+	x64 | amd64)
+		cpu=x86_64
+		vendor=pc
+		;;
+	# Recognize the basic CPU types without company name.
+	*)
+		cpu=$basic_machine
+		vendor=unknown
+		;;
+esac
+
+unset -v basic_machine
+
+# Decode basic machines in the full and proper CPU-Company form.
+case $cpu-$vendor in
+	# Here we handle the default manufacturer of certain CPU types in canonical form. It is in
+	# some cases the only manufacturer, in others, it is the most popular.
+	craynv-unknown)
+		vendor=cray
+		basic_os=${basic_os:-unicosmp}
+		;;
+	c90-unknown | c90-cray)
+		vendor=cray
+		basic_os=${Basic_os:-unicos}
+		;;
+	fx80-unknown)
+		vendor=alliant
+		;;
+	romp-unknown)
+		vendor=ibm
+		;;
+	mmix-unknown)
+		vendor=knuth
+		;;
+	microblaze-unknown | microblazeel-unknown)
+		vendor=xilinx
+		;;
+	rs6000-unknown)
+		vendor=ibm
+		;;
+	vax-unknown)
+		vendor=dec
+		;;
+	pdp11-unknown)
+		vendor=dec
+		;;
+	we32k-unknown)
+		vendor=att
+		;;
+	cydra-unknown)
+		vendor=cydrome
+		;;
+	i370-ibm*)
+		vendor=ibm
+		;;
+	orion-unknown)
+		vendor=highlevel
+		;;
+	xps-unknown | xps100-unknown)
+		cpu=xps100
+		vendor=honeywell
+		;;
+
+	# Here we normalize CPU types with a missing or matching vendor
+	dpx20-unknown | dpx20-bull)
+		cpu=rs6000
+		vendor=bull
+		basic_os=${basic_os:-bosx}
+		;;
+
+	# Here we normalize CPU types irrespective of the vendor
+	amd64-*)
+		cpu=x86_64
+		;;
+	blackfin-*)
+		cpu=bfin
+		basic_os=linux
+		;;
+	c54x-*)
+		cpu=tic54x
+		;;
+	c55x-*)
+		cpu=tic55x
+		;;
+	c6x-*)
+		cpu=tic6x
+		;;
+	e500v[12]-*)
+		cpu=powerpc
+		basic_os=${basic_os}"spe"
+		;;
+	mips3*-*)
+		cpu=mips64
+		;;
+	ms1-*)
+		cpu=mt
+		;;
+	m68knommu-*)
+		cpu=m68k
+		basic_os=linux
+		;;
+	m9s12z-* | m68hcs12z-* | hcs12z-* | s12z-*)
+		cpu=s12z
+		;;
+	openrisc-*)
+		cpu=or32
+		;;
+	parisc-*)
+		cpu=hppa
+		basic_os=linux
+		;;
+	pentium-* | p5-* | k5-* | k6-* | nexgen-* | viac3-*)
+		cpu=i586
+		;;
+	pentiumpro-* | p6-* | 6x86-* | athlon-* | athalon_*-*)
+		cpu=i686
+		;;
+	pentiumii-* | pentium2-* | pentiumiii-* | pentium3-*)
+		cpu=i686
+		;;
+	pentium4-*)
+		cpu=i786
+		;;
+	pc98-*)
+		cpu=i386
+		;;
+	ppc-* | ppcbe-*)
+		cpu=powerpc
+		;;
+	ppcle-* | powerpclittle-*)
+		cpu=powerpcle
+		;;
+	ppc64-*)
+		cpu=powerpc64
+		;;
+	ppc64le-* | powerpc64little-*)
+		cpu=powerpc64le
+		;;
+	sb1-*)
+		cpu=mipsisa64sb1
+		;;
+	sb1el-*)
+		cpu=mipsisa64sb1el
+		;;
+	sh5e[lb]-*)
+		cpu=`echo "$cpu" | sed 's/^\(sh.\)e\(.\)$/\1\2e/'`
+		;;
+	spur-*)
+		cpu=spur
+		;;
+	strongarm-* | thumb-*)
+		cpu=arm
+		;;
+	tx39-*)
+		cpu=mipstx39
+		;;
+	tx39el-*)
+		cpu=mipstx39el
+		;;
+	x64-*)
+		cpu=x86_64
+		;;
+	xscale-* | xscalee[bl]-*)
+		cpu=`echo "$cpu" | sed 's/^xscale/arm/'`
+		;;
+	arm64-*)
+		cpu=aarch64
+		;;
+
+	# Recognize the canonical CPU Types that limit and/or modify the
+	# company names they are paired with.
+	cr16-*)
+		basic_os=${basic_os:-elf}
+		;;
+	crisv32-* | etraxfs*-*)
+		cpu=crisv32
+		vendor=axis
+		;;
+	cris-* | etrax*-*)
+		cpu=cris
+		vendor=axis
+		;;
+	crx-*)
+		basic_os=${basic_os:-elf}
+		;;
+	neo-tandem)
+		cpu=neo
+		vendor=tandem
+		;;
+	nse-tandem)
+		cpu=nse
+		vendor=tandem
+		;;
+	nsr-tandem)
+		cpu=nsr
+		vendor=tandem
+		;;
+	nsv-tandem)
+		cpu=nsv
+		vendor=tandem
+		;;
+	nsx-tandem)
+		cpu=nsx
+		vendor=tandem
+		;;
+	mipsallegrexel-sony)
+		cpu=mipsallegrexel
+		vendor=sony
+		;;
+	tile*-*)
+		basic_os=${basic_os:-linux-gnu}
+		;;
+
+	*)
+		# Recognize the canonical CPU types that are allowed with any
+		# company name.
+		case $cpu in
+			1750a | 580 \
+			| a29k \
+			| aarch64 | aarch64_be \
+			| abacus \
+			| alpha | alphaev[4-8] | alphaev56 | alphaev6[78] \
+			| alpha64 | alpha64ev[4-8] | alpha64ev56 | alpha64ev6[78] \
+			| alphapca5[67] | alpha64pca5[67] \
+			| am33_2.0 \
+			| amdgcn \
+			| arc | arceb | arc32 | arc64 \
+			| arm | arm[lb]e | arme[lb] | armv* \
+			| avr | avr32 \
+			| asmjs \
+			| ba \
+			| be32 | be64 \
+			| bfin | bpf | bs2000 \
+			| c[123]* | c30 | [cjt]90 | c4x \
+			| c8051 | clipper | craynv | csky | cydra \
+			| d10v | d30v | dlx | dsp16xx \
+			| e2k | elxsi | epiphany \
+			| f30[01] | f700 | fido | fr30 | frv | ft32 | fx80 \
+			| h8300 | h8500 \
+			| hppa | hppa1.[01] | hppa2.0 | hppa2.0[nw] | hppa64 \
+			| hexagon \
+			| i370 | i*86 | i860 | i960 | ia16 | ia64 \
+			| ip2k | iq2000 \
+			| k1om \
+			| le32 | le64 \
+			| lm32 \
+			| loongarch32 | loongarch64 | loongarchx32 \
+			| m32c | m32r | m32rle \
+			| m5200 | m68000 | m680[012346]0 | m68360 | m683?2 | m68k \
+			| m6811 | m68hc11 | m6812 | m68hc12 | m68hcs12x \
+			| m88110 | m88k | maxq | mb | mcore | mep | metag \
+			| microblaze | microblazeel \
+			| mips | mipsbe | mipseb | mipsel | mipsle \
+			| mips16 \
+			| mips64 | mips64eb | mips64el \
+			| mips64octeon | mips64octeonel \
+			| mips64orion | mips64orionel \
+			| mips64r5900 | mips64r5900el \
+			| mips64vr | mips64vrel \
+			| mips64vr4100 | mips64vr4100el \
+			| mips64vr4300 | mips64vr4300el \
+			| mips64vr5000 | mips64vr5000el \
+			| mips64vr5900 | mips64vr5900el \
+			| mipsisa32 | mipsisa32el \
+			| mipsisa32r2 | mipsisa32r2el \
+			| mipsisa32r3 | mipsisa32r3el \
+			| mipsisa32r5 | mipsisa32r5el \
+			| mipsisa32r6 | mipsisa32r6el \
+			| mipsisa64 | mipsisa64el \
+			| mipsisa64r2 | mipsisa64r2el \
+			| mipsisa64r3 | mipsisa64r3el \
+			| mipsisa64r5 | mipsisa64r5el \
+			| mipsisa64r6 | mipsisa64r6el \
+			| mipsisa64sb1 | mipsisa64sb1el \
+			| mipsisa64sr71k | mipsisa64sr71kel \
+			| mipsr5900 | mipsr5900el \
+			| mipstx39 | mipstx39el \
+			| mmix \
+			| mn10200 | mn10300 \
+			| moxie \
+			| mt \
+			| msp430 \
+			| nds32 | nds32le | nds32be \
+			| nfp \
+			| nios | nios2 | nios2eb | nios2el \
+			| none | np1 | ns16k | ns32k | nvptx \
+			| open8 \
+			| or1k* \
+			| or32 \
+			| orion \
+			| picochip \
+			| pdp10 | pdp11 | pj | pjl | pn | power \
+			| powerpc | powerpc64 | powerpc64le | powerpcle | powerpcspe \
+			| pru \
+			| pyramid \
+			| riscv | riscv32 | riscv32be | riscv64 | riscv64be \
+			| rl78 | romp | rs6000 | rx \
+			| s390 | s390x \
+			| score \
+			| sh | shl \
+			| sh[1234] | sh[24]a | sh[24]ae[lb] | sh[23]e | she[lb] | sh[lb]e \
+			| sh[1234]e[lb] |  sh[12345][lb]e | sh[23]ele | sh64 | sh64le \
+			| sparc | sparc64 | sparc64b | sparc64v | sparc86x | sparclet \
+			| sparclite \
+			| sparcv8 | sparcv9 | sparcv9b | sparcv9v | sv1 | sx* \
+			| spu \
+			| tahoe \
+			| thumbv7* \
+			| tic30 | tic4x | tic54x | tic55x | tic6x | tic80 \
+			| tron \
+			| ubicom32 \
+			| v70 | v850 | v850e | v850e1 | v850es | v850e2 | v850e2v3 \
+			| vax \
+			| visium \
+			| w65 \
+			| wasm32 | wasm64 \
+			| we32k \
+			| x86 | x86_64 | xc16x | xgate | xps100 \
+			| xstormy16 | xtensa* \
+			| ymp \
+			| z8k | z80)
+				;;
+
+			*)
+				echo Invalid configuration \`"$1"\': machine \`"$cpu-$vendor"\' not recognized 1>&2
+				exit 1
+				;;
+		esac
+		;;
+esac
+
+# Here we canonicalize certain aliases for manufacturers.
+case $vendor in
+	digital*)
+		vendor=dec
+		;;
+	commodore*)
+		vendor=cbm
+		;;
+	*)
+		;;
+esac
+
+# Decode manufacturer-specific aliases for certain operating systems.
+
+if test x$basic_os != x
+then
+
+# First recognize some ad-hoc cases, or perhaps split kernel-os, or else just
+# set os.
+case $basic_os in
+	gnu/linux*)
+		kernel=linux
+		os=`echo "$basic_os" | sed -e 's|gnu/linux|gnu|'`
+		;;
+	os2-emx)
+		kernel=os2
+		os=`echo "$basic_os" | sed -e 's|os2-emx|emx|'`
+		;;
+	nto-qnx*)
+		kernel=nto
+		os=`echo "$basic_os" | sed -e 's|nto-qnx|qnx|'`
+		;;
+	*-*)
+		# shellcheck disable=SC2162
+		saved_IFS=$IFS
+		IFS="-" read kernel os <<EOF
+$basic_os
+EOF
+		IFS=$saved_IFS
+		;;
+	# Default OS when just kernel was specified
+	nto*)
+		kernel=nto
+		os=`echo "$basic_os" | sed -e 's|nto|qnx|'`
+		;;
+	linux*)
+		kernel=linux
+		os=`echo "$basic_os" | sed -e 's|linux|gnu|'`
+		;;
+	*)
+		kernel=
+		os=$basic_os
+		;;
+esac
+
+# Now, normalize the OS (knowing we just have one component, it's not a kernel,
+# etc.)
+case $os in
+	# First match some system type aliases that might get confused
+	# with valid system types.
+	# solaris* is a basic system type, with this one exception.
+	auroraux)
+		os=auroraux
+		;;
+	bluegene*)
+		os=cnk
+		;;
+	solaris1 | solaris1.*)
+		os=`echo "$os" | sed -e 's|solaris1|sunos4|'`
+		;;
+	solaris)
+		os=solaris2
+		;;
+	unixware*)
+		os=sysv4.2uw
+		;;
+	# es1800 is here to avoid being matched by es* (a different OS)
+	es1800*)
+		os=ose
+		;;
+	# Some version numbers need modification
+	chorusos*)
+		os=chorusos
+		;;
+	isc)
+		os=isc2.2
+		;;
+	sco6)
+		os=sco5v6
+		;;
+	sco5)
+		os=sco3.2v5
+		;;
+	sco4)
+		os=sco3.2v4
+		;;
+	sco3.2.[4-9]*)
+		os=`echo "$os" | sed -e 's/sco3.2./sco3.2v/'`
+		;;
+	sco*v* | scout)
+		# Don't match below
+		;;
+	sco*)
+		os=sco3.2v2
+		;;
+	psos*)
+		os=psos
+		;;
+	qnx*)
+		os=qnx
+		;;
+	hiux*)
+		os=hiuxwe2
+		;;
+	lynx*178)
+		os=lynxos178
+		;;
+	lynx*5)
+		os=lynxos5
+		;;
+	lynxos*)
+		# don't get caught up in next wildcard
+		;;
+	lynx*)
+		os=lynxos
+		;;
+	mac[0-9]*)
+		os=`echo "$os" | sed -e 's|mac|macos|'`
+		;;
+	opened*)
+		os=openedition
+		;;
+	os400*)
+		os=os400
+		;;
+	sunos5*)
+		os=`echo "$os" | sed -e 's|sunos5|solaris2|'`
+		;;
+	sunos6*)
+		os=`echo "$os" | sed -e 's|sunos6|solaris3|'`
+		;;
+	wince*)
+		os=wince
+		;;
+	utek*)
+		os=bsd
+		;;
+	dynix*)
+		os=bsd
+		;;
+	acis*)
+		os=aos
+		;;
+	atheos*)
+		os=atheos
+		;;
+	syllable*)
+		os=syllable
+		;;
+	386bsd)
+		os=bsd
+		;;
+	ctix* | uts*)
+		os=sysv
+		;;
+	nova*)
+		os=rtmk-nova
+		;;
+	ns2)
+		os=nextstep2
+		;;
+	# Preserve the version number of sinix5.
+	sinix5.*)
+		os=`echo "$os" | sed -e 's|sinix|sysv|'`
+		;;
+	sinix*)
+		os=sysv4
+		;;
+	tpf*)
+		os=tpf
+		;;
+	triton*)
+		os=sysv3
+		;;
+	oss*)
+		os=sysv3
+		;;
+	svr4*)
+		os=sysv4
+		;;
+	svr3)
+		os=sysv3
+		;;
+	sysvr4)
+		os=sysv4
+		;;
+	ose*)
+		os=ose
+		;;
+	*mint | mint[0-9]* | *MiNT | MiNT[0-9]*)
+		os=mint
+		;;
+	dicos*)
+		os=dicos
+		;;
+	pikeos*)
+		# Until real need of OS specific support for
+		# particular features comes up, bare metal
+		# configurations are quite functional.
+		case $cpu in
+		    arm*)
+			os=eabi
+			;;
+		    *)
+			os=elf
+			;;
+		esac
+		;;
+	*)
+		# No normalization, but not necessarily accepted, that comes below.
+		;;
+esac
+
+else
+
+# Here we handle the default operating systems that come with various machines.
+# The value should be what the vendor currently ships out the door with their
+# machine or put another way, the most popular os provided with the machine.
+
+# Note that if you're going to try to match "-MANUFACTURER" here (say,
+# "-sun"), then you have to tell the case statement up towards the top
+# that MANUFACTURER isn't an operating system.  Otherwise, code above
+# will signal an error saying that MANUFACTURER isn't an operating
+# system, and we'll never get to this point.
+
+kernel=
+case $cpu-$vendor in
+	score-*)
+		os=elf
+		;;
+	spu-*)
+		os=elf
+		;;
+	*-acorn)
+		os=riscix1.2
+		;;
+	arm*-rebel)
+		kernel=linux
+		os=gnu
+		;;
+	arm*-semi)
+		os=aout
+		;;
+	c4x-* | tic4x-*)
+		os=coff
+		;;
+	c8051-*)
+		os=elf
+		;;
+	clipper-intergraph)
+		os=clix
+		;;
+	hexagon-*)
+		os=elf
+		;;
+	tic54x-*)
+		os=coff
+		;;
+	tic55x-*)
+		os=coff
+		;;
+	tic6x-*)
+		os=coff
+		;;
+	# This must come before the *-dec entry.
+	pdp10-*)
+		os=tops20
+		;;
+	pdp11-*)
+		os=none
+		;;
+	*-dec | vax-*)
+		os=ultrix4.2
+		;;
+	m68*-apollo)
+		os=domain
+		;;
+	i386-sun)
+		os=sunos4.0.2
+		;;
+	m68000-sun)
+		os=sunos3
+		;;
+	m68*-cisco)
+		os=aout
+		;;
+	mep-*)
+		os=elf
+		;;
+	mips*-cisco)
+		os=elf
+		;;
+	mips*-*)
+		os=elf
+		;;
+	or32-*)
+		os=coff
+		;;
+	*-tti)	# must be before sparc entry or we get the wrong os.
+		os=sysv3
+		;;
+	sparc-* | *-sun)
+		os=sunos4.1.1
+		;;
+	pru-*)
+		os=elf
+		;;
+	*-be)
+		os=beos
+		;;
+	*-ibm)
+		os=aix
+		;;
+	*-knuth)
+		os=mmixware
+		;;
+	*-wec)
+		os=proelf
+		;;
+	*-winbond)
+		os=proelf
+		;;
+	*-oki)
+		os=proelf
+		;;
+	*-hp)
+		os=hpux
+		;;
+	*-hitachi)
+		os=hiux
+		;;
+	i860-* | *-att | *-ncr | *-altos | *-motorola | *-convergent)
+		os=sysv
+		;;
+	*-cbm)
+		os=amigaos
+		;;
+	*-dg)
+		os=dgux
+		;;
+	*-dolphin)
+		os=sysv3
+		;;
+	m68k-ccur)
+		os=rtu
+		;;
+	m88k-omron*)
+		os=luna
+		;;
+	*-next)
+		os=nextstep
+		;;
+	*-sequent)
+		os=ptx
+		;;
+	*-crds)
+		os=unos
+		;;
+	*-ns)
+		os=genix
+		;;
+	i370-*)
+		os=mvs
+		;;
+	*-gould)
+		os=sysv
+		;;
+	*-highlevel)
+		os=bsd
+		;;
+	*-encore)
+		os=bsd
+		;;
+	*-sgi)
+		os=irix
+		;;
+	*-siemens)
+		os=sysv4
+		;;
+	*-masscomp)
+		os=rtu
+		;;
+	f30[01]-fujitsu | f700-fujitsu)
+		os=uxpv
+		;;
+	*-rom68k)
+		os=coff
+		;;
+	*-*bug)
+		os=coff
+		;;
+	*-apple)
+		os=macos
+		;;
+	*-atari*)
+		os=mint
+		;;
+	*-wrs)
+		os=vxworks
+		;;
+	*)
+		os=none
+		;;
+esac
+
+fi
+
+# Now, validate our (potentially fixed-up) OS.
+case $os in
+	# Sometimes we do "kernel-libc", so those need to count as OSes.
+	musl* | newlib* | relibc* | uclibc*)
+		;;
+	# Likewise for "kernel-abi"
+	eabi* | gnueabi*)
+		;;
+	# VxWorks passes extra cpu info in the 4th filed.
+	simlinux | simwindows | spe)
+		;;
+	# Now accept the basic system types.
+	# The portable systems comes first.
+	# Each alternative MUST end in a * to match a version number.
+	gnu* | android* | bsd* | mach* | minix* | genix* | ultrix* | irix* \
+	     | *vms* | esix* | aix* | cnk* | sunos | sunos[34]* \
+	     | hpux* | unos* | osf* | luna* | dgux* | auroraux* | solaris* \
+	     | sym* |  plan9* | psp* | sim* | xray* | os68k* | v88r* \
+	     | hiux* | abug | nacl* | netware* | windows* \
+	     | os9* | macos* | osx* | ios* \
+	     | mpw* | magic* | mmixware* | mon960* | lnews* \
+	     | amigaos* | amigados* | msdos* | newsos* | unicos* | aof* \
+	     | aos* | aros* | cloudabi* | sortix* | twizzler* \
+	     | nindy* | vxsim* | vxworks* | ebmon* | hms* | mvs* \
+	     | clix* | riscos* | uniplus* | iris* | isc* | rtu* | xenix* \
+	     | mirbsd* | netbsd* | dicos* | openedition* | ose* \
+	     | bitrig* | openbsd* | secbsd* | solidbsd* | libertybsd* | os108* \
+	     | ekkobsd* | freebsd* | riscix* | lynxos* | os400* \
+	     | bosx* | nextstep* | cxux* | aout* | elf* | oabi* \
+	     | ptx* | coff* | ecoff* | winnt* | domain* | vsta* \
+	     | udi* | lites* | ieee* | go32* | aux* | hcos* \
+	     | chorusrdb* | cegcc* | glidix* | serenity* \
+	     | cygwin* | msys* | pe* | moss* | proelf* | rtems* \
+	     | midipix* | mingw32* | mingw64* | mint* \
+	     | uxpv* | beos* | mpeix* | udk* | moxiebox* \
+	     | interix* | uwin* | mks* | rhapsody* | darwin* \
+	     | openstep* | oskit* | conix* | pw32* | nonstopux* \
+	     | storm-chaos* | tops10* | tenex* | tops20* | its* \
+	     | os2* | vos* | palmos* | uclinux* | nucleus* | morphos* \
+	     | scout* | superux* | sysv* | rtmk* | tpf* | windiss* \
+	     | powermax* | dnix* | nx6 | nx7 | sei* | dragonfly* \
+	     | skyos* | haiku* | rdos* | toppers* | drops* | es* \
+	     | onefs* | tirtos* | phoenix* | fuchsia* | redox* | bme* \
+	     | midnightbsd* | amdhsa* | unleashed* | emscripten* | wasi* \
+	     | nsk* | powerunix* | genode* | zvmoe* | qnx* | emx* | zephyr* \
+	     | fiwix* )
+		;;
+	# This one is extra strict with allowed versions
+	sco3.2v2 | sco3.2v[4-9]* | sco5v6*)
+		# Don't forget version if it is 3.2v4 or newer.
+		;;
+	none)
+		;;
+	*)
+		echo Invalid configuration \`"$1"\': OS \`"$os"\' not recognized 1>&2
+		exit 1
+		;;
+esac
+
+# As a final step for OS-related things, validate the OS-kernel combination
+# (given a valid OS), if there is a kernel.
+case $kernel-$os in
+	linux-gnu* | linux-dietlibc* | linux-android* | linux-newlib* \
+		   | linux-musl* | linux-relibc* | linux-uclibc* )
+		;;
+	uclinux-uclibc* )
+		;;
+	-dietlibc* | -newlib* | -musl* | -relibc* | -uclibc* )
+		# These are just libc implementations, not actual OSes, and thus
+		# require a kernel.
+		echo "Invalid configuration \`$1': libc \`$os' needs explicit kernel." 1>&2
+		exit 1
+		;;
+	kfreebsd*-gnu* | kopensolaris*-gnu*)
+		;;
+	vxworks-simlinux | vxworks-simwindows | vxworks-spe)
+		;;
+	nto-qnx*)
+		;;
+	os2-emx)
+		;;
+	*-eabi* | *-gnueabi*)
+		;;
+	-*)
+		# Blank kernel with real OS is always fine.
+		;;
+	*-*)
+		echo "Invalid configuration \`$1': Kernel \`$kernel' not known to work with OS \`$os'." 1>&2
+		exit 1
+		;;
+esac
+
+# Here we handle the case where we know the os, and the CPU type, but not the
+# manufacturer.  We pick the logical manufacturer.
+case $vendor in
+	unknown)
+		case $cpu-$os in
+			*-riscix*)
+				vendor=acorn
+				;;
+			*-sunos*)
+				vendor=sun
+				;;
+			*-cnk* | *-aix*)
+				vendor=ibm
+				;;
+			*-beos*)
+				vendor=be
+				;;
+			*-hpux*)
+				vendor=hp
+				;;
+			*-mpeix*)
+				vendor=hp
+				;;
+			*-hiux*)
+				vendor=hitachi
+				;;
+			*-unos*)
+				vendor=crds
+				;;
+			*-dgux*)
+				vendor=dg
+				;;
+			*-luna*)
+				vendor=omron
+				;;
+			*-genix*)
+				vendor=ns
+				;;
+			*-clix*)
+				vendor=intergraph
+				;;
+			*-mvs* | *-opened*)
+				vendor=ibm
+				;;
+			*-os400*)
+				vendor=ibm
+				;;
+			s390-* | s390x-*)
+				vendor=ibm
+				;;
+			*-ptx*)
+				vendor=sequent
+				;;
+			*-tpf*)
+				vendor=ibm
+				;;
+			*-vxsim* | *-vxworks* | *-windiss*)
+				vendor=wrs
+				;;
+			*-aux*)
+				vendor=apple
+				;;
+			*-hms*)
+				vendor=hitachi
+				;;
+			*-mpw* | *-macos*)
+				vendor=apple
+				;;
+			*-*mint | *-mint[0-9]* | *-*MiNT | *-MiNT[0-9]*)
+				vendor=atari
+				;;
+			*-vos*)
+				vendor=stratus
+				;;
+		esac
+		;;
+esac
+
+echo "$cpu-$vendor-${kernel:+$kernel-}$os"
+exit
+
+# Local variables:
+# eval: (add-hook 'before-save-hook 'time-stamp)
+# time-stamp-start: "timestamp='"
+# time-stamp-format: "%:y-%02m-%02d"
+# time-stamp-end: "'"
+# End:
diff --git a/recipes/clustalw/meta.yaml b/recipes/clustalw/meta.yaml
index a8ef603ac467b..0a24762959d42 100644
--- a/recipes/clustalw/meta.yaml
+++ b/recipes/clustalw/meta.yaml
@@ -9,7 +9,10 @@ source:
     - patch  # [osx]
 
 build:
-  number: 9
+  number: 10
+  run_exports:
+    - {{ pin_subpackage('clustalw', max_pin="x.x") }}
+
 
 requirements:
   build:
@@ -27,6 +30,8 @@ about:
   summary: ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins.
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   skip-lints:
     - should_not_be_noarch_source
   identifiers:
diff --git a/recipes/cmappy/meta.yaml b/recipes/cmappy/meta.yaml
index 196a2880e7b0d..69d6ac37d40e1 100644
--- a/recipes/cmappy/meta.yaml
+++ b/recipes/cmappy/meta.yaml
@@ -15,9 +15,11 @@ build:
     - gct2gctx=cmapPy.pandasGEXpress.gct2gctx:main
     - concat=cmapPy.pandasGEXpress.concat:main
     - subset=cmapPy.pandasGEXpress.subset:main
-  number: 5
+  number: 6
   skip: True  # [py<30]
   script: {{ PYTHON }} -m pip install . --no-deps -vv
+  run_exports:
+    - {{ pin_subpackage('cmappy', max_pin='x') }}
 
 requirements:
   build:
@@ -50,3 +52,7 @@ about:
   license_family: BSD
   summary: Assorted tools for interacting with .gct, .gctx, .grp, and .gmt files as
     well as other Connectivity Map (Broad Institute) data/tools
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/cmat/build.sh b/recipes/cmat/build.sh
new file mode 100644
index 0000000000000..035f39b8879b4
--- /dev/null
+++ b/recipes/cmat/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+
+$PYTHON -m pip install .
+
+CMAT="${PREFIX}/share/${PKG_NAME}-${PKG_VERSION}"
+mkdir -p ${PREFIX}/bin ${CMAT}
+
+chmod 775 bin/cmat/*
+cp bin/cmat/* ${PREFIX}/bin
+
+mv bin/ mappings/ pipelines/ ${CMAT}
\ No newline at end of file
diff --git a/recipes/cmat/meta.yaml b/recipes/cmat/meta.yaml
new file mode 100644
index 0000000000000..b05472e761e06
--- /dev/null
+++ b/recipes/cmat/meta.yaml
@@ -0,0 +1,64 @@
+{% set name = "cmat" %}
+{% set version = "3.1.3" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/EBIvariation/CMAT/archive/v{{version}}.tar.gz
+  sha256: e084d692249e14181c7997c4e09685b6dfe7b9d953078d2872e3005049b2356a
+
+build:
+  number: 0
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  host:
+    - nextflow >=21.10
+    - python >=3.8,<3.10  # restriction from biopython
+    - biopython ==1.77
+    - coverage ==6.5.0
+    - coveralls ==3.3.1
+    - jsonschema ==3.2.0
+    - numpy ==1.24.3
+    - pandas ==1.5.3
+    - pytest ==7.2.2
+    - pytest-cov ==2.10.0
+    - requests ==2.31.0
+    - requests-mock ==1.8.0
+    - retry ==0.9.2
+  run:
+    - nextflow >=21.10.0
+    - python >=3.8,<3.10
+    - biopython ==1.77
+    - coverage ==6.5.0
+    - coveralls ==3.3.1
+    - jsonschema ==3.2.0
+    - numpy ==1.24.3
+    - pandas ==1.5.3
+    - pytest ==7.2.2
+    - pytest-cov ==2.10.0
+    - requests ==2.31.0
+    - requests-mock ==1.8.0
+    - retry ==0.9.2
+
+test:
+  imports:
+    - cmat
+  commands:
+    - cmat
+    # rm to avoid this: https://github.com/bioconda/bioconda-utils/issues/172
+    - cmat annotate --help && rm -rf .nextflow
+
+about:
+  home: https://github.com/EBIvariation/CMAT
+  summary: ClinVar Mapping and Annotation Toolkit
+  license: Apache-2.0
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - apriltuesday
diff --git a/recipes/cmsearch_tblout_deoverlap/build.sh b/recipes/cmsearch_tblout_deoverlap/build.sh
new file mode 100644
index 0000000000000..c1ed775cc7b76
--- /dev/null
+++ b/recipes/cmsearch_tblout_deoverlap/build.sh
@@ -0,0 +1,3 @@
+mkdir -p $PREFIX/bin
+
+cp $SRC_DIR/cmsearch-deoverlap.pl $PREFIX/bin/
diff --git a/recipes/cmsearch_tblout_deoverlap/meta.yaml b/recipes/cmsearch_tblout_deoverlap/meta.yaml
new file mode 100644
index 0000000000000..a997c53fd5b5b
--- /dev/null
+++ b/recipes/cmsearch_tblout_deoverlap/meta.yaml
@@ -0,0 +1,34 @@
+{% set name = "cmsearch_tblout_deoverlap" %}
+{% set version = "0.09" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/nawrockie/cmsearch_tblout_deoverlap/archive/refs/tags/cmsearch_tblout_deoverlap-{{ version }}.tar.gz
+  sha256: 172d21155f785f1b3fa1d2bf29fc7b072b58ab7b1413c60897a94d6048c418a3
+
+build:
+  noarch: generic
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  host:
+   - perl >=5.26.2
+  run:
+   - perl >=5.26.2
+
+test:
+ source_files:
+    - check-cmsearch-v-cmscan.pl
+    - ribo.claninfo
+    - testfiles/
+
+about:
+  home: https://github.com/nawrockie/cmsearch_tblout_deoverlap
+  license: Public Domain
+  summary: 'cmsearch-deoverlap.pl: remove lower scoring overlaps from cmsearch'
+
diff --git a/recipes/cmsearch_tblout_deoverlap/run_test.sh b/recipes/cmsearch_tblout_deoverlap/run_test.sh
new file mode 100644
index 0000000000000..eef085b78840b
--- /dev/null
+++ b/recipes/cmsearch_tblout_deoverlap/run_test.sh
@@ -0,0 +1,13 @@
+#!/bin/bash
+set -e
+
+# This bit adjusts the check-cmsearch-v-cmscan.pl instructions that execute the perl scripts
+# in this tool
+sed -i 's|perl ./||' check-cmsearch-v-cmscan.pl
+
+perl check-cmsearch-v-cmscan.pl testfiles/1.cmsearch.tblout testfiles/1.cmscan.noclan.tblout
+perl check-cmsearch-v-cmscan.pl testfiles/2.cmsearch.tblout testfiles/2.cmscan.noclan.tblout
+perl check-cmsearch-v-cmscan.pl testfiles/3.cmsearch.tblout testfiles/3.cmscan.noclan.tblout
+perl check-cmsearch-v-cmscan.pl --clanin ribo.claninfo testfiles/1.cmsearch.tblout testfiles/1.cmscan.clan.tblout
+perl check-cmsearch-v-cmscan.pl --clanin ribo.claninfo testfiles/2.cmsearch.tblout testfiles/2.cmscan.clan.tblout
+perl check-cmsearch-v-cmscan.pl --clanin ribo.claninfo testfiles/3.cmsearch.tblout testfiles/3.cmscan.clan.tblout
diff --git a/recipes/cnasim/meta.yaml b/recipes/cnasim/meta.yaml
new file mode 100644
index 0000000000000..ad5f1c73128d4
--- /dev/null
+++ b/recipes/cnasim/meta.yaml
@@ -0,0 +1,45 @@
+{% set name = "cnasim" %}
+{% set version = "1.3.4" %}
+
+package:
+  name: '{{ name }}'
+  version: '{{ version }}'
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: 135d6f5857530e153eff81f9652a8d670a3e88c00df0c610ed907bd51db59334
+
+build:
+  noarch: python
+  number: 0
+  entry_points:
+    - cnasim = CNAsim.main:main
+  script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
+  run_exports:
+    - {{ pin_subpackage('cnasim', max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.7
+    - pip
+  run:
+    - python >=3.7
+    - numpy >=1.24.3
+    - scipy >=1.10.1
+    - msprime >=1.2.0
+    - biopython >=1.8.1
+    - pyfaidx >=0.7.2.1
+    - samtools
+    - dwgsim
+  
+test:
+  commands:
+    - cnasim -h
+
+about:
+  home: https://github.com/samsonweiner/CNAsim
+  license: GPL-3.0-only
+  license_file: LICENSE
+  summary: Improved simulation of single-cell copy number profiles and DNA-seq data from tumors
+  description: |
+    CNAsim is a software package for improved simulation of single-cell copy number alteration (CNA) data from tumors. See our paper with the same name published in Bioinformatics.
\ No newline at end of file
diff --git a/recipes/cnvkit/meta.yaml b/recipes/cnvkit/meta.yaml
index b4fce96ae4f94..f39326c930829 100644
--- a/recipes/cnvkit/meta.yaml
+++ b/recipes/cnvkit/meta.yaml
@@ -1,37 +1,43 @@
-{% set version="0.9.10" %}
+{% set name = "cnvkit" %}
+{% set version = "0.9.11" %}
+
 package:
-  name: cnvkit
+  name: {{ name }}
   version: {{ version }}
 
 source:
   url: https://github.com/etal/cnvkit/archive/v{{ version }}.tar.gz
-  sha256: 56739496f1f59511661107e662d81e5fd8af413571e853b0a1b34d882a19349a
+  sha256: 1763936427184270108fd51219ebc82f542e28339bdec587579b8745f61179a8
 
 build:
   noarch: python
   number: 0
-  script: {{ PYTHON }} -m pip install . --no-deps -vv
+  entry_points:
+    - cnvkit.py = cnvlib.cnvkit:main
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv
+  run_exports:
+    - {{ pin_subpackage('cnvkit', max_pin="x.x") }}
 
 requirements:
   host:
-    - python >=3.5
+    - python >=3.8
     - pip
   run:
-    - python >=3.5
+    - python >=3.8
     - bioconductor-dnacopy
-    - biopython >=1.62
-    - joblib <1.0
-    - matplotlib-base >=1.3.1
+    - biopython >=1.80
+    - matplotlib-base >=3.5.2
     - networkx >=2.4
-    - numpy >=1.9
-    - pandas >=0.23.3
-    - pomegranate >=0.9.0
-    - pyfaidx >=0.4.7
-    - pysam >=0.16.0
+    - numpy >=1.24.2
+    - pandas >=1.5.3
+    - pomegranate >=0.14.8,<=0.14.9
+    - pyfaidx >=0.7.1
+    - pysam >=0.20.0
     - r-base >=3.4.1
     - r-cghflasso
-    - reportlab >=3.0
-    - scipy >=0.15.0
+    - reportlab >=3.6.12
+    - scikit-learn >=1.1.0
+    - scipy >=1.10.1
 
 test:
   imports:
@@ -45,9 +51,30 @@ test:
 about:
   home: https://github.com/etal/cnvkit
   license: Apache-2.0
+  license_family: APACHE
+  license_file: LICENSE
   summary: Copy number variant detection from high-throughput sequencing
+  dev_url: https://github.com/etal/cnvkit
+  doc_url: https://cnvkit.readthedocs.io/en/stable/
 
 extra:
   identifiers:
     - biotools:cnvkit
     - doi:10.1371/journal.pcbi.1004873
+    - usegalaxy-eu:cnvkit_access
+    - usegalaxy-eu:cnvkit_antitarget
+    - usegalaxy-eu:cnvkit_autobin
+    - usegalaxy-eu:cnvkit_batch
+    - usegalaxy-eu:cnvkit_call
+    - usegalaxy-eu:cnvkit_coverage
+    - usegalaxy-eu:cnvkit_diagram
+    - usegalaxy-eu:cnvkit_fix
+    - usegalaxy-eu:cnvkit_heatmap
+    - usegalaxy-eu:cnvkit_reference
+    - usegalaxy-eu:cnvkit_scatter
+    - usegalaxy-eu:cnvkit_segment
+    - usegalaxy-eu:cnvkit_target
+    - usegalaxy-eu:cnvkit_breaks
+    - usegalaxy-eu:cnvkit_genemetrics
+    - usegalaxy-eu:cnvkit_segmetrics
+    - usegalaxy-eu:cnvkit_sex
diff --git a/recipes/coatran/build.sh b/recipes/coatran/build.sh
index b0e17ef5d4f51..3fb84cb72e5d8 100644
--- a/recipes/coatran/build.sh
+++ b/recipes/coatran/build.sh
@@ -2,4 +2,4 @@
 
 mkdir -p ${PREFIX}/bin
 make CXX=${CXX}
-cp {coatran_constant,coatran_expgrowth,coatran_transtree,coatran_inftime} ${PREFIX}/bin
+cp coatran_* ${PREFIX}/bin
diff --git a/recipes/coatran/meta.yaml b/recipes/coatran/meta.yaml
index 92dea311f4897..73c066d76d605 100644
--- a/recipes/coatran/meta.yaml
+++ b/recipes/coatran/meta.yaml
@@ -1,43 +1,43 @@
-{% set name = "CoaTran" %}
-{% set version = "0.0.1" %}
-{% set commit = "e0d34b0" %}
-{% set sha256 = "a20c263675ec34ecbfd08eecfaa639aa5b6fb7648b5d27fdf41cec9f8eb8cce0" %}
+{% set name = "coatran" %}
+{% set version = "0.0.4" %}
 
 package:
-  name: "{{ name|lower }}"
-  version: "{{ version }}"
-
-source:
-  url: "https://github.com/niemasd/CoaTran/archive/{{ commit }}.zip"
-  sha256: {{ sha256}}
+  name: {{ name }}
+  version: {{ version }}
 
 build:
-  number: 3
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('coatran', max_pin="x.x.x") }}
+
+source:
+  url: https://github.com/niemasd/CoaTran/archive/refs/tags/{{ version }}.tar.gz
+  sha256: b0af9eff5c78a7126ce5f36386c3c514e811d3470392a7a18566195e40765456
 
 requirements:
   build:
-    - make
+    - {{ compiler('c') }}
     - {{ compiler('cxx') }}
-  host:
-  run:
-
-test:
-  commands:
-    - coatran_constant --help 2>&1 | grep CoaTran
-    - coatran_expgrowth --help 2>&1 | grep CoaTran
-    - coatran_transtree --help 2>&1 | grep CoaTran
-    - coatran_inftime --help 2>&1 | grep CoaTran
+    - make
 
 about:
-  home: "https://github.com/niemasd/CoaTran"
-  license: GPLv3
-  license_family: GPL
+  home: https://github.com/niemasd/CoaTran
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
-  summary: "CoaTran: Coalescent tree simulation along a transmission network"
-  dev_url: "https://github.com/niemasd/CoaTran"
+  summary: Coalescent tree simulation along a transmission network
+  dev_url: https://github.com/niemasd/CoaTran
+
+test:
+  commands:
+    - coatran_constant -h 2>&1 | grep "CoaTran"
+    - coatran_inftime -h 2>&1 | grep "CoaTran"
+    - coatran_transtree -h 2>&1 | grep "CoaTran"
 
 extra:
   identifiers:
     - biotools:coatran
+    - doi:10.1101/2020.11.10.377499
   recipe-maintainers:
     - acaprez
+    - niemasd
diff --git a/recipes/cobra-meta/meta.yaml b/recipes/cobra-meta/meta.yaml
new file mode 100644
index 0000000000000..75e252817b53c
--- /dev/null
+++ b/recipes/cobra-meta/meta.yaml
@@ -0,0 +1,45 @@
+{% set name = "cobra-meta" %}
+{% set version = "1.2.3" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/linxingchen/cobra/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 877813cd705cb5a8b3611f3fca705bb6576ba82a8283552bed73c34bec880375
+
+build:
+  entry_points:
+    - cobra-meta = cobra:main
+  noarch: python
+  script: "{{ PYTHON }} -m pip install . -vv"
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('cobra-meta', max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.7
+    - pip
+  run:
+    - python >=3.7
+    - biopython
+    - pysam
+    - numpy
+    - blast >=2.14.0,<3.0.0
+
+test:
+  commands:
+    - cobra-meta -v
+
+about:
+  home: https://github.com/linxingchen/cobra
+  license: MIT
+  summary: 'COBRA is a tool to get higher quality viral genomes assembled from metagenomes.'
+
+extra:
+  identifiers:
+    - doi:10.1101/2023.05.30.542503
+  recipe-maintainers:
+    - linxingchen
diff --git a/recipes/cobs/meta.yaml b/recipes/cobs/meta.yaml
index ae42225155e83..5bc5a476470e7 100644
--- a/recipes/cobs/meta.yaml
+++ b/recipes/cobs/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.2.1" %}
+{% set version = "0.3.0" %}
 {% set name = "cobs" %}
 
 package:
@@ -7,10 +7,12 @@ package:
 
 source:
   url: https://github.com/iqbal-lab-org/{{ name }}/releases/download/v{{ version }}/{{ name }}-{{ version }}.tar.gz
-  sha256: ce2ab77ffb17327250244f47481e100df5191a3e8c218e9725cb5e9c80e24ee2
+  sha256: cbbb9039ac0077f139d1ba2841f88d75efc351296e48ac9d388822d1f95063c1
 
 build:
-  number: 2
+  number: 1
+  run_exports:
+  - {{ pin_subpackage(name|lower, max_pin="x.x") }}
 
 requirements:
   build:
diff --git a/recipes/codoff/meta.yaml b/recipes/codoff/meta.yaml
new file mode 100644
index 0000000000000..3777b0487eae2
--- /dev/null
+++ b/recipes/codoff/meta.yaml
@@ -0,0 +1,44 @@
+{% set name = "codoff" %}
+{% set version = "1.1.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/Kalan-Lab/codoff/archive/refs/tags/v{{ version }}.tar.gz 
+  sha256: ffa16c6f4fba96bfb6b0a4d9efda202bb6215d1aca558cac9d96761e02962237 
+
+build:
+  number: 0
+  noarch: python
+  script: "{{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv"
+  run_exports:
+    - {{ pin_subpackage("codoff", max_pin="x.x") }}
+    
+requirements:
+  host:
+    - python
+    - setuptools
+    - pip
+    - wget
+  run:
+    - python =3.10
+    - biopython =1.79
+    - setuptools
+    - scipy
+    - seaborn
+    - matplotlib-base
+    - pyrodigal
+
+test:
+  commands:
+    - codoff -h
+
+about:
+  home: https://github.com/Kalan-Lab/codoff
+  license: BSD-3-Clause license
+  license_file: LICENSE
+  license_family: BSD
+  summary: "codoff: program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome."
+  dev_url: https://github.com/Kalan-Lab/codoff
diff --git a/recipes/cogent3/meta.yaml b/recipes/cogent3/meta.yaml
index 56180035737ca..4772fb5cad6f0 100644
--- a/recipes/cogent3/meta.yaml
+++ b/recipes/cogent3/meta.yaml
@@ -1,32 +1,37 @@
 {% set name = "cogent3" %}
-{% set version = "2022.8.24a1" %}
+{% set version = "2024.5.7a1" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/cogent3-{{ version }}.tar.gz
-  sha256: b23692c372363f4020b3ba81720dfbdf795652b775844bb7d6a9bff18bfea310
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: 7e4417a2728d246b1acc695209ec2e4f24ab9c7bfcd01cd113db0a791ea1c090
 
 build:
   noarch: python
   script: {{ PYTHON }} -m pip install . -vv
   number: 0
+  run_exports:
+  - {{ pin_subpackage(name, max_pin=None) }}
 
 requirements:
   host:
-    - python >=3
+    - python >=3.9, <3.12
     - pip
-    - flit-core
+    - flit-core >=3.2, <4
   run:
-    - python >=3
+    - python >=3.9, <3.12
+    - scipy
     - chardet
     - numpy
-    - numba >0.48.0
+    - numba >0.53.0
     - scitrack
     - tqdm
     - tinydb
+    - typing_extensions
+    - stevedore
 
 test:
   imports:
@@ -41,3 +46,5 @@ about:
 extra:
   recipe-maintainers:
     - dpryan79
+    - GavinHuttley
+    - khiron
diff --git a/recipes/cojac/meta.yaml b/recipes/cojac/meta.yaml
index ebba79f64da3a..19cf4fb339016 100644
--- a/recipes/cojac/meta.yaml
+++ b/recipes/cojac/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "cojac" %}
-{% set version = "0.9" %}
-{% set sha256 = "6879c5f5d873e51aa32a32ad76a0e45a6e8d59ccb88107e22da479d1e69fa1d5" %}
+{% set version = "0.9.1" %}
+{% set sha256 = "64b8f0eec1ccda1f0de2a5adbff68adf50e4f483210d97a8b85c65354317c1a9" %}
 
 package:
   name: {{ name|lower }}
@@ -13,6 +13,8 @@ source:
 build:
   noarch: python
   number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
   script:
     - {{ PYTHON }} -m pip install . --ignore-installed --no-deps -v
     - mkdir -p ${PREFIX}/share/{{ name }}/
diff --git a/recipes/colabfold/meta.yaml b/recipes/colabfold/meta.yaml
new file mode 100644
index 0000000000000..c69bc9d8395a3
--- /dev/null
+++ b/recipes/colabfold/meta.yaml
@@ -0,0 +1,71 @@
+{% set cf_version = "1.5.5" %}
+{% set cf_hash = "7fb0ad263c24ec00d46f2dff1611989234bc1351d71653dd06006f2c88f83dcb" %}
+{% set af_version = "2.3.6" %}
+{% set af_hash = "a5674257d92928511d70f94ec3261e275cb3442a7762b5210e01f445692d2182" %}
+
+package:
+  name: colabfold
+  version: {{ cf_version }}
+
+build:
+  noarch: python
+  script: |
+    python -m pip install --no-deps --ignore-installed colabfold/
+    python -m pip install --no-deps --ignore-installed alphafold/
+  run_exports:
+    - {{ pin_subpackage('colabfold', max_pin="x") }}
+  number: 2
+
+source:
+  - url: https://github.com/sokrypton/ColabFold/archive/refs/tags/v{{ cf_version }}.tar.gz
+    sha256: {{ cf_hash }}
+    folder: colabfold
+  - url: https://github.com/steineggerlab/alphafold/archive/refs/tags/v{{ af_version }}.tar.gz
+    sha256: {{ af_hash }}
+    folder: alphafold
+
+requirements:
+  host:
+    - pip
+    - python
+    - poetry-core >=1.0.0
+  run:
+    - python
+    - absl-py
+    - matplotlib-base
+    - numpy
+    - scipy
+    - requests
+    - tqdm
+    - pandas
+    - appdirs
+    - py3Dmol
+    - dm-tree
+    - ml-collections
+    - importlib-metadata
+    - dm-haiku >=0.0.12
+    - biopython <=1.82
+    - jax >=0.4.23,<0.4.26
+    - jaxlib >=0.4.23,<0.4.26
+    - tensorflow-base >=2.12.1=cpu*
+    - mmseqs2 >=15.6f452
+    - kalign2 >=2.04
+    - hhsuite >=3.3.0
+    - openmm >=7.7.0,<8.1.0
+    - pdbfixer
+
+test:
+  commands:
+    - which colabfold_batch
+
+about:
+  home: https://github.com/sokrypton/ColabFold
+  summary: "ColabFold: making protein folding accessible to all"
+  license: MIT
+
+extra:
+  identifiers:
+    - doi:10.1038/s41592-022-01488-1
+    - biotools:colabfold
+  recipe-maintainers:
+    - milot-mirdita
diff --git a/recipes/colorid_bv/build.sh b/recipes/colorid_bv/build.sh
new file mode 100644
index 0000000000000..1fb100e3dd489
--- /dev/null
+++ b/recipes/colorid_bv/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash -e
+
+# Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
+# We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
+export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="$(pwd)/.cargo"
+
+# build statically linked binary with Rust
+RUST_BACKTRACE=1 \
+ C_INCLUDE_PATH=$PREFIX/include \
+ LIBRARY_PATH=$PREFIX/lib \
+ cargo install --verbose --root $PREFIX --path .
diff --git a/recipes/colorid_bv/meta.yaml b/recipes/colorid_bv/meta.yaml
new file mode 100644
index 0000000000000..183d9dfc9bae1
--- /dev/null
+++ b/recipes/colorid_bv/meta.yaml
@@ -0,0 +1,34 @@
+{% set version = "0.1.0" %}
+{% set sha256 = "208de579a3b3f7a38b18ecf3cbee5dbb54a7f9c7f7c55eb1388e088695170c0a" %}
+{% set name = "colorid_bv" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('colorid_bv', max_pin="x.x") }}
+
+source:
+  url: https://github.com/hcdenbakker/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+requirements:
+  build:
+    - rust >=1.43
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - {{ compiler('rust') }}
+
+test:
+  commands:
+    - colorid_bv --help
+
+about:
+  home: https://github.com/hcdenbakker/{{ name }}
+  license: MIT
+  license_family: MIT
+  #license_file: LICENSE
+  summary: "Experiments with using BIGSI data structure for metagenomic and QC applications"
diff --git a/recipes/comebin/build.sh b/recipes/comebin/build.sh
new file mode 100644
index 0000000000000..26fb91279a8cf
--- /dev/null
+++ b/recipes/comebin/build.sh
@@ -0,0 +1,9 @@
+#!/usr/bin/env bash
+
+mkdir -p $PREFIX/bin/ 
+cp -r COMEBin $PREFIX/bin/
+chmod a+x auxiliary/*
+cp -r auxiliary $PREFIX/bin/
+chmod a+x bin/run_comebin.sh
+cp bin/run_comebin.sh $PREFIX/bin/
+
diff --git a/recipes/comebin/meta.yaml b/recipes/comebin/meta.yaml
new file mode 100644
index 0000000000000..3b95de96aefd5
--- /dev/null
+++ b/recipes/comebin/meta.yaml
@@ -0,0 +1,58 @@
+package:
+  name: comebin
+  version: "1.0.4"
+
+source:
+  url: https://github.com/ziyewang/COMEBin/archive/refs/tags/1.0.4.tar.gz
+  sha256: 63726b4ae450c0ca366845d46f2065326a83454b2c7f87cec5b53adc9527be22
+
+build:
+  number: 0
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage('comebin', max_pin="x.x") }}
+
+requirements:
+  run:
+    - atomicwrites 1.4.0
+    - bedtools 2.30.0
+    - biolib 0.1.6
+    - biopython 1.76
+    - bwa 0.7.17
+    - checkm-genome 1.1.3
+    - fraggenescan 1.31 
+    - hmmer 3.1b2
+    - matplotlib-base 3.5.1
+    - matplotlib-inline 0.1.3
+    - numpy 1.19.0
+    - pplacer 1.1.alpha19
+    - prodigal 2.6.3
+    - python 3.7
+    - python-dateutil 2.8.2
+    - python-fastjsonschema 2.15.3
+    - pytorch 1.10.2
+    - pip 22.0.4
+    - samtools 1.15.1
+    - scipy 1.7.3
+    - setuptools 59.5.0
+    - tensorboard 1.15.0
+    - click 8.0.4
+    - hnswlib 0.6.2
+    - igraph 0.9.9
+    - joblib 1.1.0
+    - leidenalg 0.8.10
+    - networkx 2.6.3
+    - pandas 1.3.5
+    - scanpy 1.9.1
+    - scikit-learn 0.22.1
+    - seaborn 0.12.1
+    - pyyaml 6.0
+
+test:
+  commands:
+    - which run_comebin.sh 
+
+about:
+  home: "https://github.com/ziyewang/COMEBin"
+  license: BSD
+  summary: "COMEBin allows effective binning of metagenomic contigs using COntrastive Multi-viEw representation learning"
diff --git a/recipes/comet-ms/build.sh b/recipes/comet-ms/build.sh
index 4201a024dcc62..f7a9edbb36ae9 100644
--- a/recipes/comet-ms/build.sh
+++ b/recipes/comet-ms/build.sh
@@ -5,10 +5,13 @@ set -x
 export INCLUDE_PATH="${PREFIX}/MSToolkit/include"
 export CPPFLAGS="-I${PREFIX}/MSToolkit/include"
 
+# To switch from static to dynamic linking on linux. The Makefile does not have this flag for macOS
+# Dynamic linking does not work with mulled container tests
+#sed -i.bak 's#-static##' Makefile
 sed -i.bak "s#gcc#${CC}#;s#g++#${CXX}#" MSToolkit/Makefile
 sed -i.bak "s#gcc#${CC}#;s#g++#${CXX}#" CometSearch/Makefile
 
-make CXX=${CXX}
+make CXX=${CXX} -j ${CPU_COUNT}
 
 mkdir -p "$PREFIX"/bin
 cp comet.exe ${PREFIX}/bin/comet
diff --git a/recipes/comet-ms/meta.yaml b/recipes/comet-ms/meta.yaml
index ca7c83e01a164..66057b41ec387 100644
--- a/recipes/comet-ms/meta.yaml
+++ b/recipes/comet-ms/meta.yaml
@@ -1,25 +1,29 @@
 {% set name = "comet-ms" %}
-{% set version = "2023010" %}
-{% set md5 = "f1899e07eeeefddedf22b93133f9aea8" %}
+{% set version = "2023012" %}
+{% set md5 = "d60433652e5a5e682288ddbdfb014eb4" %}
 
 package:
   name: {{ name }}
   version: {{ version }}
 
 source:
-  url: https://github.com/UWPR/Comet/archive/refs/tags/v2023.01.0.zip
+  url: https://github.com/UWPR/Comet/archive/refs/tags/v2023.01.2.zip
   md5: {{ md5 }}
 
 build:
+  run_exports:
+    - {{ pin_subpackage('comet-ms', max_pin=None) }}
   skip: True  # [osx] 
-  number: 2
+  number: 1
 
 requirements:
   build:
     - make
+    - unzip
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
-    - unzip
+    # To have clock_gettime in glibc. Linking to librt did not work due to inflexible Makefiles
+    - sysroot_linux-64 2.17  # [linux64]
 
 test:
   commands:
@@ -32,6 +36,8 @@ about:
   summary: 'Comet is a command line tool that does MS/MS database search.'
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - doi:10.1007/s13361-015-1179-x
     - doi:10.1002/pmic.201200439
diff --git a/recipes/compleasm/meta.yaml b/recipes/compleasm/meta.yaml
index d5fbb5f1394f8..3a880d2db517b 100644
--- a/recipes/compleasm/meta.yaml
+++ b/recipes/compleasm/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "compleasm" %}
-{% set version = "0.2.2" %}
-{% set hash = "07772e567b6c058e2a685abbe4ab75d9636bd8aebb013b5348744383e4266766" %}
+{% set version = "0.2.6" %}
+{% set hash = "298a50064b3ada90089912844e40c174de49c976a19ccb53d3645f312649ad25" %}
 
 package:
   name: "{{ name|lower }}"
@@ -17,6 +17,8 @@ build:
     - compleasm=compleasm:main
   script:
     - {{ PYTHON }} -m pip install . -vv
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x.x") }}
 
 requirements:
   host:
diff --git a/recipes/complexcgr/meta.yaml b/recipes/complexcgr/meta.yaml
new file mode 100644
index 0000000000000..0dd7c0b71a5f1
--- /dev/null
+++ b/recipes/complexcgr/meta.yaml
@@ -0,0 +1,49 @@
+{% set name = "complexcgr" %}
+{% set version = "0.8.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/complexcgr-{{ version }}.tar.gz
+  sha256: 800085b4f2187a0acc4c2cb09d4c8459d9192f6d91a502101393e012978960dd
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  build:
+  run_exports:
+    - {{ pin_subpackage('complexcgr', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.9,<4.0
+    - poetry-core >=1.0.0
+    - pip
+  run:
+    - python >=3.9.0,<4.0.0
+    - tqdm >=4.61.2,<5.0.0
+    - matplotlib-base >=3.4.2,<4.0.0
+    - pillow >=10.0.0,<11.0.0
+    - numpy >=1.22.3,<2.0.0
+    - biopython >=1.79.0,<2.0.0
+
+test:
+  imports:
+    - complexcgr
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/AlgoLab/complexCGR
+  summary: Encoders and Image representation of DNA/RNA sequences based on the Chaos Game Representation of DNA
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - jorgeavilacartes
diff --git a/recipes/concoct/meta.yaml b/recipes/concoct/meta.yaml
index 1f84b43f8a6d0..1dbd2af74470f 100644
--- a/recipes/concoct/meta.yaml
+++ b/recipes/concoct/meta.yaml
@@ -8,7 +8,7 @@ source:
 
 build:
   preserve_egg_dir: True
-  number: 3
+  number: 4
   skip: True  # [osx]
 
 requirements:
@@ -20,7 +20,6 @@ requirements:
     - cython >=0.28.5
     - numpy >=1.8.0
     - gsl
-    - {{ mpi }}
   run:
     - python >=3.5
     - setuptools
@@ -30,11 +29,10 @@ requirements:
     - pandas >=0.11.0
     - biopython >=1.62b
     - pytz >=2013.9
-    - scikit-learn >=0.14.1
+    - scikit-learn ==1.1.3
     - nose >=1.3.0
     - gsl
     - samtools
-    - {{ mpi }}
 
 test:
   commands:
diff --git a/recipes/condiga/meta.yaml b/recipes/condiga/meta.yaml
new file mode 100644
index 0000000000000..bc43a45207ab8
--- /dev/null
+++ b/recipes/condiga/meta.yaml
@@ -0,0 +1,55 @@
+{% set name = "ConDiGA" %}
+{% set version = "0.2.2" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://github.com/metagentools/{{ name }}/archive/v{{ version }}.tar.gz"
+  sha256: 492bcf86bfceff50af12c230e98284f9422330d6d2840280c0eb3fed3fd843ed
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - convert=condiga_utils.support.convert:main
+  script:
+    - "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('condiga', max_pin="x.x") }}
+
+requirements:
+  host:
+    - pip
+    - python >=3.8
+  run:
+    - python >=3.8
+    - click
+    - biopython
+    - xlsxwriter
+    - tqdm
+    - minimap2
+    - taxonkit
+
+test:
+  commands:
+    - condiga --help
+    - convert --help
+
+about:
+  home: "https://github.com/metagentools/ConDiGA"
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "ConDiGA: Contigs Directed Gene Annotation for accurate protein sequence database construction in metaproteomics"
+  description: |
+    ConDiGA is a taxonomic annotation pipeline for metagenomic data to construct accurate protein sequence databases for deep metaproteomic coverage.
+  doc_url: "https://github.com/metagentools/ConDiGA"
+  dev_url: "https://github.com/metagentools/ConDiGA"
+
+extra:
+  recipe-maintainers:
+    - Vini2
+  identifiers:
+    - doi:10.1101/2023.04.19.537311
diff --git a/recipes/conifer/build.sh b/recipes/conifer/build.sh
new file mode 100644
index 0000000000000..e9093b090318c
--- /dev/null
+++ b/recipes/conifer/build.sh
@@ -0,0 +1,33 @@
+#!/bin/bash
+
+# Build conifer
+${CC} -std=c99 -Wall -Wextra -O3 -D_POSIX_C_SOURCE=200809L \
+    -I $PREFIX/include \
+    -I third_party/uthash/src \
+    -I . src/utils.c src/kraken_stats.c src/kraken_taxo.c src/main.c \
+    -o conifer -lz -lm
+
+# Build is_a_parent_of_b
+${CC} -std=c99 -Wall -O3 -D_POSIX_C_SOURCE=200809L \
+    -I $PREFIX/include \
+    -I third_party/uthash/src \
+    -I . src/kraken_stats.c src/kraken_taxo.c utils/is_a_parent_of_b.c \
+    -o is_a_parent_of_b -lm
+    
+# Build show_ancestors
+${CC} -std=c99 -Wall -O3 -D_POSIX_C_SOURCE=200809L \
+    -I $PREFIX/include \
+    -I third_party/uthash/src \
+    -I . src/kraken_stats.c src/kraken_taxo.c utils/show_ancestors.c \
+    -o show_ancestors -lm
+
+# Build taxid_name
+${CC} -std=c99 -Wall -O3 -D_POSIX_C_SOURCE=200809L \
+    -I $PREFIX/include \
+    -I third_party/uthash/src \
+    -I . src/kraken_stats.c src/kraken_taxo.c utils/taxid_name.c \
+    -o taxid_name -lm
+
+# Move files
+mkdir -p $PREFIX/bin
+mv conifer is_a_parent_of_b show_ancestors taxid_name $PREFIX/bin
diff --git a/recipes/conifer/meta.yaml b/recipes/conifer/meta.yaml
new file mode 100644
index 0000000000000..cf42a35cc9875
--- /dev/null
+++ b/recipes/conifer/meta.yaml
@@ -0,0 +1,42 @@
+{% set name = "Conifer" %}
+{% set version = "1.0.2" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  - url: https://github.com/Ivarz/Conifer/archive/refs/tags/v{{ version }}.tar.gz
+    sha256: 741ed0e04fe46364d154b09b32d6c76dbd210ba84fc2eb357070d16d2eedf2f1
+  
+  - url: https://github.com/ThrowTheSwitch/Unity/archive/5e9acef74faffba86375258d822f49d0b1173b5e.zip
+    sha256: 33d277423179d15f439a1bda21df94bafa43c9179cc496ccf799495abb3eb5ad
+    folder: third_party/Unity
+  
+  - url: https://github.com/troydhanson/uthash/archive/8e67ced1d1c5bd8141c542a22630e6de78aa6b90.zip
+    sha256: b6405dbb2ef469a3147892906214a369a0b134560ed943a20e450c21c7b6720d
+    folder: third_party/uthash
+
+build:
+  number: 0
+
+requirements:
+  build:
+    - zlib
+    - {{ compiler('c') }}
+  host:
+    - zlib
+
+test:
+  commands:
+    - conifer -v
+    - is_a_parent_of_b 2>&1 | grep "taxid"
+    - show_ancestors 2>&1 | grep "taxid"
+    - taxid_name 2>&1 | grep "taxid"
+
+about:
+  home: https://github.com/Ivarz/Conifer/
+  license: BSD-2-Clause
+  license_family: BSD
+  license_file: LICENSE
+  summary: Calculate confidence scores from Kraken2 output
diff --git a/recipes/conipher/meta.yaml b/recipes/conipher/meta.yaml
index cdcae9d7b8531..27ec14933e8da 100644
--- a/recipes/conipher/meta.yaml
+++ b/recipes/conipher/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "2.1.0" %}
-{% set sha256 = "5b5d988dbf79288e6dca09c2c41d65ad89c9186e40a31c2bfdb4504a43d3919f" %}
+{% set version = "2.2.0" %}
+{% set sha256 = "d985126f31ce71141e031e6431ee0c0baaad0b42a65492f46de06456638ee151" %}
 
 package:
   name: conipher
@@ -15,9 +15,12 @@ build:
   rpaths:
     - lib/R/lib
     - lib/
+  run_exports:
+    - {{ pin_subpackage('conipher', max_pin="x.x") }}
 
 requirements:
   host:
+    - pyclone
     - r-base <=4.1.3,>=3.6.1
     - r-tidyverse
     - r-cowplot
@@ -40,6 +43,7 @@ requirements:
     - r-bootstrap
     - r-gplots
   run:
+    - pyclone
     - r-base <=4.1.3,>=3.6.1
     - r-tidyverse
     - r-cowplot
@@ -79,4 +83,4 @@ extra:
   recipe-maintainers:
     - arihueb
   identifiers:
-    - doi:10.21203/rs.3.pex-2158/v1
\ No newline at end of file
+    - doi:10.1038/s41596-023-00913-9
\ No newline at end of file
diff --git a/recipes/constax/meta.yaml b/recipes/constax/meta.yaml
index 92e8e86e4392b..5caeaa61991a4 100644
--- a/recipes/constax/meta.yaml
+++ b/recipes/constax/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "constax" %}
-{% set version = "2.0.19" %}
-{% set sha256hash = "fe688db539a9bc9454778b5bcbb0cf422da76ea236fe9bfef00cf10c212f2c38" %}
+{% set version = "2.0.20" %}
+{% set sha256hash = "6b58217ae28e9fb3d1f4ff07b3c0520c7026e645aeadb537629568516e4503ea" %}
 
 package:
   name: {{ name|lower }}
@@ -9,6 +9,8 @@ package:
 build:
   number: 0
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('constax', max_pin="x") }}
 
 source:
   url: "https://github.com/liberjul/CONSTAXv2/archive/v{{ version }}.tar.gz"
diff --git a/recipes/control-freec/LICENSE b/recipes/control-freec/LICENSE
new file mode 100644
index 0000000000000..3dd177c08f53d
--- /dev/null
+++ b/recipes/control-freec/LICENSE
@@ -0,0 +1,87 @@
+GNU GENERAL PUBLIC LICENSE
+
+Version 2, June 1991
+
+Copyright (C) 1989, 1991 Free Software Foundation, Inc.
+51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+
+Everyone is permitted to copy and distribute verbatim copies
+of this license document, but changing it is not allowed.
+
+Preamble
+
+The licenses for most software are designed to take away your freedom to share and change it. By contrast, the GNU General Public License is intended to guarantee your freedom to share and change free software--to make sure the software is free for all its users. This General Public License applies to most of the Free Software Foundation's software and to any other program whose authors commit to using it. (Some other Free Software Foundation software is covered by the GNU Lesser General Public License instead.) You can apply it to your programs, too.
+
+When we speak of free software, we are referring to freedom, not price. Our General Public Licenses are designed to make sure that you have the freedom to distribute copies of free software (and charge for this service if you wish), that you receive source code or can get it if you want it, that you can change the software or use pieces of it in new free programs; and that you know you can do these things.
+
+To protect your rights, we need to make restrictions that forbid anyone to deny you these rights or to ask you to surrender the rights. These restrictions translate to certain responsibilities for you if you distribute copies of the software, or if you modify it.
+
+For example, if you distribute copies of such a program, whether gratis or for a fee, you must give the recipients all the rights that you have. You must make sure that they, too, receive or can get the source code. And you must show them these terms so they know their rights.
+
+We protect your rights with two steps: (1) copyright the software, and (2) offer you this license which gives you legal permission to copy, distribute and/or modify the software.
+
+Also, for each author's protection and ours, we want to make certain that everyone understands that there is no warranty for this free software. If the software is modified by someone else and passed on, we want its recipients to know that what they have is not the original, so that any problems introduced by others will not reflect on the original authors' reputations.
+
+Finally, any free program is threatened constantly by software patents. We wish to avoid the danger that redistributors of a free program will individually obtain patent licenses, in effect making the program proprietary. To prevent this, we have made it clear that any patent must be licensed for everyone's free use or not licensed at all.
+
+The precise terms and conditions for copying, distribution and modification follow.
+TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
+
+0. This License applies to any program or other work which contains a notice placed by the copyright holder saying it may be distributed under the terms of this General Public License. The "Program", below, refers to any such program or work, and a "work based on the Program" means either the Program or any derivative work under copyright law: that is to say, a work containing the Program or a portion of it, either verbatim or with modifications and/or translated into another language. (Hereinafter, translation is included without limitation in the term "modification".) Each licensee is addressed as "you".
+
+Activities other than copying, distribution and modification are not covered by this License; they are outside its scope. The act of running the Program is not restricted, and the output from the Program is covered only if its contents constitute a work based on the Program (independent of having been made by running the Program). Whether that is true depends on what the Program does.
+
+1. You may copy and distribute verbatim copies of the Program's source code as you receive it, in any medium, provided that you conspicuously and appropriately publish on each copy an appropriate copyright notice and disclaimer of warranty; keep intact all the notices that refer to this License and to the absence of any warranty; and give any other recipients of the Program a copy of this License along with the Program.
+
+You may charge a fee for the physical act of transferring a copy, and you may at your option offer warranty protection in exchange for a fee.
+
+2. You may modify your copy or copies of the Program or any portion of it, thus forming a work based on the Program, and copy and distribute such modifications or work under the terms of Section 1 above, provided that you also meet all of these conditions:
+
+    a) You must cause the modified files to carry prominent notices stating that you changed the files and the date of any change.
+    b) You must cause any work that you distribute or publish, that in whole or in part contains or is derived from the Program or any part thereof, to be licensed as a whole at no charge to all third parties under the terms of this License.
+    c) If the modified program normally reads commands interactively when run, you must cause it, when started running for such interactive use in the most ordinary way, to print or display an announcement including an appropriate copyright notice and a notice that there is no warranty (or else, saying that you provide a warranty) and that users may redistribute the program under these conditions, and telling the user how to view a copy of this License. (Exception: if the Program itself is interactive but does not normally print such an announcement, your work based on the Program is not required to print an announcement.)
+
+These requirements apply to the modified work as a whole. If identifiable sections of that work are not derived from the Program, and can be reasonably considered independent and separate works in themselves, then this License, and its terms, do not apply to those sections when you distribute them as separate works. But when you distribute the same sections as part of a whole which is a work based on the Program, the distribution of the whole must be on the terms of this License, whose permissions for other licensees extend to the entire whole, and thus to each and every part regardless of who wrote it.
+
+Thus, it is not the intent of this section to claim rights or contest your rights to work written entirely by you; rather, the intent is to exercise the right to control the distribution of derivative or collective works based on the Program.
+
+In addition, mere aggregation of another work not based on the Program with the Program (or with a work based on the Program) on a volume of a storage or distribution medium does not bring the other work under the scope of this License.
+
+3. You may copy and distribute the Program (or a work based on it, under Section 2) in object code or executable form under the terms of Sections 1 and 2 above provided that you also do one of the following:
+
+    a) Accompany it with the complete corresponding machine-readable source code, which must be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or,
+    b) Accompany it with a written offer, valid for at least three years, to give any third party, for a charge no more than your cost of physically performing source distribution, a complete machine-readable copy of the corresponding source code, to be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or,
+    c) Accompany it with the information you received as to the offer to distribute corresponding source code. (This alternative is allowed only for noncommercial distribution and only if you received the program in object code or executable form with such an offer, in accord with Subsection b above.)
+
+The source code for a work means the preferred form of the work for making modifications to it. For an executable work, complete source code means all the source code for all modules it contains, plus any associated interface definition files, plus the scripts used to control compilation and installation of the executable. However, as a special exception, the source code distributed need not include anything that is normally distributed (in either source or binary form) with the major components (compiler, kernel, and so on) of the operating system on which the executable runs, unless that component itself accompanies the executable.
+
+If distribution of executable or object code is made by offering access to copy from a designated place, then offering equivalent access to copy the source code from the same place counts as distribution of the source code, even though third parties are not compelled to copy the source along with the object code.
+
+4. You may not copy, modify, sublicense, or distribute the Program except as expressly provided under this License. Any attempt otherwise to copy, modify, sublicense or distribute the Program is void, and will automatically terminate your rights under this License. However, parties who have received copies, or rights, from you under this License will not have their licenses terminated so long as such parties remain in full compliance.
+
+5. You are not required to accept this License, since you have not signed it. However, nothing else grants you permission to modify or distribute the Program or its derivative works. These actions are prohibited by law if you do not accept this License. Therefore, by modifying or distributing the Program (or any work based on the Program), you indicate your acceptance of this License to do so, and all its terms and conditions for copying, distributing or modifying the Program or works based on it.
+
+6. Each time you redistribute the Program (or any work based on the Program), the recipient automatically receives a license from the original licensor to copy, distribute or modify the Program subject to these terms and conditions. You may not impose any further restrictions on the recipients' exercise of the rights granted herein. You are not responsible for enforcing compliance by third parties to this License.
+
+7. If, as a consequence of a court judgment or allegation of patent infringement or for any other reason (not limited to patent issues), conditions are imposed on you (whether by court order, agreement or otherwise) that contradict the conditions of this License, they do not excuse you from the conditions of this License. If you cannot distribute so as to satisfy simultaneously your obligations under this License and any other pertinent obligations, then as a consequence you may not distribute the Program at all. For example, if a patent license would not permit royalty-free redistribution of the Program by all those who receive copies directly or indirectly through you, then the only way you could satisfy both it and this License would be to refrain entirely from distribution of the Program.
+
+If any portion of this section is held invalid or unenforceable under any particular circumstance, the balance of the section is intended to apply and the section as a whole is intended to apply in other circumstances.
+
+It is not the purpose of this section to induce you to infringe any patents or other property right claims or to contest validity of any such claims; this section has the sole purpose of protecting the integrity of the free software distribution system, which is implemented by public license practices. Many people have made generous contributions to the wide range of software distributed through that system in reliance on consistent application of that system; it is up to the author/donor to decide if he or she is willing to distribute software through any other system and a licensee cannot impose that choice.
+
+This section is intended to make thoroughly clear what is believed to be a consequence of the rest of this License.
+
+8. If the distribution and/or use of the Program is restricted in certain countries either by patents or by copyrighted interfaces, the original copyright holder who places the Program under this License may add an explicit geographical distribution limitation excluding those countries, so that distribution is permitted only in or among countries not thus excluded. In such case, this License incorporates the limitation as if written in the body of this License.
+
+9. The Free Software Foundation may publish revised and/or new versions of the General Public License from time to time. Such new versions will be similar in spirit to the present version, but may differ in detail to address new problems or concerns.
+
+Each version is given a distinguishing version number. If the Program specifies a version number of this License which applies to it and "any later version", you have the option of following the terms and conditions either of that version or of any later version published by the Free Software Foundation. If the Program does not specify a version number of this License, you may choose any version ever published by the Free Software Foundation.
+
+10. If you wish to incorporate parts of the Program into other free programs whose distribution conditions are different, write to the author to ask for permission. For software which is copyrighted by the Free Software Foundation, write to the Free Software Foundation; we sometimes make exceptions for this. Our decision will be guided by the two goals of preserving the free status of all derivatives of our free software and of promoting the sharing and reuse of software generally.
+
+NO WARRANTY
+
+11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
+
+12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES.
+END OF TERMS AND CONDITIONS
\ No newline at end of file
diff --git a/recipes/control-freec/meta.yaml b/recipes/control-freec/meta.yaml
index fd4a71251279d..f38a50db7ccbe 100644
--- a/recipes/control-freec/meta.yaml
+++ b/recipes/control-freec/meta.yaml
@@ -1,18 +1,22 @@
-{% set version = "11.6" %}
+{% set name = "control-freec" %}
+{% set version = "11.6b" %}
+{% set sha256 = "be3927307f632b7f70513dc9d5851685e03d25a1b26b52e1f996f92a89ab3c6d" %}
 
 package:
-  name: control-freec
+  name: {{ name|lower }}
   version: {{ version }}
 
 source:
   url: https://github.com/BoevaLab/FREEC/archive/v{{ version }}.tar.gz
-  sha256: 36564f86a01236e720cf412780e87eb24f224470f5bae45a99edb2d4a3cd1734
+  sha256: {{ sha256 }}
   patches:
     - makeGraph_Chromosome.R.patch
     - perl_shebang.patch
 
 build:
-  number: 3
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('control-freec', max_pin="x") }}
 
 requirements:
   build:
@@ -34,6 +38,7 @@ test:
     - which makeGraph_Chromosome.R
     - vcf2snpFreec.pl
     - which assess_significance.R
+    - which makeGraph2.0.R
 
 about:
   home: https://github.com/BoevaLab/FREEC
@@ -49,4 +54,4 @@ extra:
     like e.g. freec2bed.pl and freec2circos.pl (see homepage) are available in the
     command line as well.
   identifiers:
-    - biotools:freec
+    - biotools:freec
\ No newline at end of file
diff --git a/recipes/cooler/meta.yaml b/recipes/cooler/meta.yaml
index 5d5ad14483e2b..1f31a27fa5bab 100644
--- a/recipes/cooler/meta.yaml
+++ b/recipes/cooler/meta.yaml
@@ -1,38 +1,42 @@
-{% set version = "0.9.2" %}
+{% set name = "cooler" %}
+{% set version = "0.10.0" %}
 
 package:
-  name: cooler
+  name: {{ name }}
   version: {{ version }}
 
 source:
   url: https://pypi.python.org/packages/source/c/cooler/cooler-{{ version }}.tar.gz
-  sha256: 88cbf987733385f441f35c0c076a84ac31fc5a5ec38067d4bb5b3ea96a66c613
+  sha256: 09526f71263a49273a8bec72948027d08aa66da89b785e4d517e61ad174b3531
 
 build:
   number: 0
   noarch: python
   entry_points:
     - cooler = cooler.cli:cli
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv "
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage('cooler', max_pin="x.x") }}
 
 requirements:
   host:
-    - python
+    - python >=3.8
     - pip
+    - hatchling
+    - hatch-vcs
   run:
     - asciitree
-    - click >7
+    - click >=7
     - cytoolz
     - dask
     - h5py >=2.5
-    - hdf5
     - multiprocess
     - numpy >=1.9
     - pairix
-    - pandas >1.0
+    - pandas >1.5
     - pyfaidx
-    - pysam >0.8
-    - python
+    - pysam
+    - python >=3.8
     - pyyaml
     - scipy
     - simplejson
@@ -42,16 +46,18 @@ test:
     - cooler
     - cooler.cli
     - cooler.sandbox
-
   commands:
     # click requires a unicode locale
     - cooler --help
 
 about:
-  home: https://github.com/open2c/cooler
-  summary: 'Sparse binary format for genomic interaction matrices'
-  license: BSD-3-Clause
+  home: "https://github.com/open2c/cooler"
+  summary: 'Sparse binary format for genomic interaction matrices.'
+  license: "BSD-3-Clause"
   license_family: BSD
+  license_file: LICENSE
+  dev_url: "https://github.com/open2c/cooler"
+  doc_url: "https://open2c.github.io/cooler"
 
 extra:
   identifiers:
diff --git a/recipes/cooltools/meta.yaml b/recipes/cooltools/meta.yaml
index 3153df58c7360..b041ba49d764a 100644
--- a/recipes/cooltools/meta.yaml
+++ b/recipes/cooltools/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "cooltools" %}
-{% set version = "0.5.4" %}
+{% set version = "0.7.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,14 +7,15 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 24cd25a52c03f9f2473aa33dc6a4729f28856cc8812f3f4aa8f7e792877d9ef3
+  sha256: 8b26d4857cc76b2dd3d1097b85f828cf6d5f1cf85b0cfd4b67a310e33e7ece1c
 
 build:
-  number: 2
-  skip: True # [py <= 37]
+  number: 1
   entry_points:
     - cooltools = cooltools.cli:cli
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('cooltools', max_pin="x.x") }}
 
 requirements:
   build:
@@ -23,16 +24,17 @@ requirements:
     - cython
     - pip
     - python
-    - numpy <1.24
+    - numpy
   run:
-    - bioframe >=0.3.3
+    - bioframe >=0.4.1
     - click >=7
     - cooler >=0.9.1
     - joblib
     - matplotlib-base
+    - multiprocess
     - numba
-    - numpy <1.24 # remove constraint once https://github.com/numba/numba/issues/8615 has been resolved
-    - pandas >=1.5.1,<2 #Temporary upper ceiling
+    - {{ pin_compatible('numpy') }}
+    - pandas >=1.5.1
     - python
     - scikit-learn >=1.1.2
     - scipy
diff --git a/recipes/corgi/meta.yaml b/recipes/corgi/meta.yaml
new file mode 100644
index 0000000000000..ae7dc2274df25
--- /dev/null
+++ b/recipes/corgi/meta.yaml
@@ -0,0 +1,66 @@
+{% set name = "corgi" %}
+{% set version = "0.4.0" %}
+{% set pypiname = "bio-corgi" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ pypiname[0] }}/{{ pypiname }}/bio_corgi-{{ version }}.tar.gz
+  sha256: bd1a00bc3fc6c407da8727575b98dc32b52df7b4f5f43297a62172112f74d74e
+
+build:
+  entry_points:
+    - corgi-train = corgi.apps:Corgi.main
+    - corgi = corgi.apps:Corgi.inference_only_main
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.8,<3.12
+    - poetry-core >=1.0.0
+    - pip
+  run:
+    - python >=3.8,<3.12
+    - biopython >=1.79.0,<2.0.0
+    - fastai >=2.4.1,<3.0.0
+    - dask-core >=2021.7.1,<2022.0.0
+    - progressbar2 >=3.53.1,<4.0.0
+    - h5py >=3.1.0,<4.0.0
+    - humanize >=3.10.0,<4.0.0
+    - pyarrow >=5.0.0
+    - plotly >=5.3.1,<6.0.0
+    - appdirs >=1.4.4,<2.0.0
+    - beautifulsoup4 >=4.10.0,<5.0.0
+    - httpx >=0.20.0,<0.21.0
+    - wandb >=0.12.9,<0.13.0
+    - optuna >=2.10.0,<3.0.0
+    - cryptography >=36.0.1,<37.0.0
+    - pymysql >=1.0.2,<2.0.0
+    - termgraph >=0.5.3,<0.6.0
+    - torchapp >=0.3.1
+
+test:
+  imports:
+    - corgi
+  commands:
+    - corgi-train --help
+    - corgi --help
+
+about:
+  home: https://pypi.org/project/bio-corgi/
+  dev_url: https://github.com/rbturnbull/corgi
+  doc_url: https://rbturnbull.github.io/corgi/ 
+  summary: Classifier for ORganelle Genomes Inter alia
+  license: Apache-2.0
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - rbturnbull
+    - vinisalazar
diff --git a/recipes/cosg/meta.yaml b/recipes/cosg/meta.yaml
new file mode 100644
index 0000000000000..71dc651904859
--- /dev/null
+++ b/recipes/cosg/meta.yaml
@@ -0,0 +1,48 @@
+{% set name = "cosg" %}
+{% set version = "1.0.1" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/cosg-{{ version }}.tar.gz
+  sha256: 258ca73066ac6cbe5121cf78d5e047b48b9372c9b448ecaeb3fb67dc9f7e759c
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  host:
+    - python
+    - pip
+  run:
+    - python
+    - anndata >=0.7.4
+    - numpy >=1.17.0
+    - pandas >=0.21
+    - scanpy >=1.6.0
+    - scikit-learn >=0.21.2
+    - scipy >=1.4
+
+test:
+  imports:
+    - cosg
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/genecell/COSG
+  summary: Accurate and fast cell marker gene identification with COSG
+  license: BSD-3-Clause
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - heylf
diff --git a/recipes/cospar/meta.yaml b/recipes/cospar/meta.yaml
new file mode 100644
index 0000000000000..01194971282e4
--- /dev/null
+++ b/recipes/cospar/meta.yaml
@@ -0,0 +1,65 @@
+{% set name = "cospar" %}
+{% set version = "0.3.3" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/cospar-{{ version }}.tar.gz
+  sha256: 881ee97be1b1d7ecb6e642a91cc3f2f2d569bd410cc2d48a117ea48cde0ec345
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('cospar', max_pin='x.x') }}
+
+requirements:
+  host:
+    - python >=3.8
+    - setuptools >=40.6.0
+    - wheel
+    - pip
+    - matplotlib-base <3.8.0
+    - scanpy >=1.6.0
+    - fastcluster >=1.1.26
+    - scikit-misc >=0.1.3
+    - plotnine >=0.7.1
+    - leidenalg >=0.7.0
+    - ete3 >=3.1.2
+    - ipywidgets
+    - gseapy >=0.9.13
+  run:
+    - python >=3.8
+    - numpy >=1.19.4
+    - scipy >=1.5.4
+    - scikit-learn >=1.1.1
+    - scanpy >=1.6.0
+    - pandas >=1.1.4
+    - statsmodels >=0.14.0
+    - plotnine >=0.7.1
+    - matplotlib-base <3.8.0
+    - fastcluster >=1.1.26
+    - anndata >=0.7.5
+    - numba >=0.52.0
+    - scikit-misc >=0.1.3
+    - leidenalg >=0.7.0
+    - ete3 >=3.1.2
+    - ipywidgets
+    - gseapy >=0.9.13
+
+test:
+  imports:
+    - cospar
+
+about:
+  home: https://github.com/ShouWenWang-Lab/cospar
+  summary: 'CoSpar: integrating state and lineage information for dynamic inference'
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - ShouWenWang
diff --git a/recipes/coverm/meta.yaml b/recipes/coverm/meta.yaml
index 7e12b62eb8ef2..90634a04ae368 100644
--- a/recipes/coverm/meta.yaml
+++ b/recipes/coverm/meta.yaml
@@ -1,14 +1,16 @@
-{% set version = "0.6.1" %}
+{% set version = "0.7.0" %}
 {% set name = "coverm" %}
-{% set sha256 = "b6211e6f89ef986691b910d7d7b4c6d1e9eb9beb64e4f71902178ed60d27f4e6" %}
+{% set sha256 = "539142529d2590166e98ed399db36913fbf8b256d8c74a1966acae849c18a828" %}
 
 package:
   name: {{ name }}
   version: {{ version }}
 
 build:
-  number: 6
+  number: 0
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage('coverm', max_pin="x.x") }}
 
 source:
   url: https://github.com/wwood/{{ name }}/archive/v{{ version }}.tar.gz
@@ -21,6 +23,8 @@ requirements:
     - {{ compiler('cxx') }}
     - clangdev  #  one of the rust submodules explicitly requires clang. As it's statically compiled that will hopefully work
     - pkg-config
+    - make
+    - cmake
   host:
     - zlib
     - gsl
@@ -43,4 +47,5 @@ test:
 about:
   home: https://github.com/wwood/CoverM
   license: GPL3
+  license_family: GPL3
   summary: CoverM aims to be a configurable, easy to use and fast DNA read coverage and relative abundance calculator focused on metagenomics applications
diff --git a/recipes/cpat/build.sh b/recipes/cpat/build.sh
new file mode 100644
index 0000000000000..ea41484c36517
--- /dev/null
+++ b/recipes/cpat/build.sh
@@ -0,0 +1,9 @@
+#!/bin/bash
+
+${PYTHON} -m pip install . --no-deps --ignore-installed -vv
+
+# Prefix '.py' has been removed from v3.0.5
+# symlinking for reverse compatibility, as suggested in release notes
+ln -s ${PREFIX}/bin/cpat ${PREFIX}/bin/cpat.py
+ln -s ${PREFIX}/bin/make_hexamer_tab ${PREFIX}/bin/make_hexamer_tab.py
+ln -s ${PREFIX}/bin/make_logitModel ${PREFIX}/bin/make_logitModel.py
diff --git a/recipes/cpat/meta.yaml b/recipes/cpat/meta.yaml
index 7303729af7f68..749a4451c6ab6 100644
--- a/recipes/cpat/meta.yaml
+++ b/recipes/cpat/meta.yaml
@@ -1,18 +1,19 @@
 {% set name = "CPAT" %}
-{% set version = "3.0.4" %}
+{% set version = "3.0.5" %}
 
 package:
   name: "{{ name|lower }}"
   version: "{{ version }}"
 
 build:
-  number: 2
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  number: 0
   skip: True  # [py2k or py > 39]
+  run_exports:
+    - {{ pin_subpackage('cpat', max_pin="x") }}
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 6d832f20729f8fc814384a27a4fcebcf81b11c0e6d80a404b4c4860d17e7d935
+  sha256: ea7c9216208221f68055f962073622939ff90bbe52ebe36c305ead9f91ed24bc
 
 requirements:
   build:
@@ -40,6 +41,6 @@ test:
 
 about:
   home: https://cpat.readthedocs.io/en/latest/
-  license: GNU General Public v2 or later (GPLv2+)
+  license: GPL-2.0-or-later
   license_file: LICENSE.txt
   summary: Coding Potential Assessment Tool
diff --git a/recipes/cptac/meta.yaml b/recipes/cptac/meta.yaml
index 942a11bb06712..650ccc357ca33 100644
--- a/recipes/cptac/meta.yaml
+++ b/recipes/cptac/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "cptac" %}
-{% set version = "1.1.2" %}
+{% set version = "1.5.13" %}
 
 
 package:
@@ -8,12 +8,14 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: c436a7f3d7d9d9ec7847b7265a9dc27fa0b73865c6af7d61f5675601aa73297f
+  sha256: be96ee2ed931625aa80d9e876163a4343afed2e2f82e7851231176058cc393c5
 
 build:
   number: 0
   noarch: python
-  script: {{ PYTHON }} -m pip install . -vv
+  script: {{ PYTHON }} -m pip install . --no-deps -vvv
+  run_exports:
+    - {{ pin_subpackage('cptac', max_pin="x") }}
 
 requirements:
   host:
@@ -34,22 +36,24 @@ requirements:
     - statsmodels >=0.10.0
     - urllib3 >=1.24.2
     - xlrd >=2.0.1
+    - pyranges
+    - tqdm
 
 test:
   imports:
     - cptac
-    - cptac.pancan
-  commands:
-    - pip check
-  requires:
-    - pip
 
 about:
   home: https://pypi.org/project/cptac/
   summary: Python packaging for CPTAC data
   license: Apache-2.0
   license_file: LICENSE.md
+  dev_url: https://github.com/PayneLab/cptac
+  doc_url: https://paynelab.github.io/cptac/
 
 extra:
   recipe-maintainers:
     - old-rob
+  identifiers:
+    - biotools:cptac
+    - doi:10.1021/acs.jproteome.0c00919
diff --git a/recipes/cramino/meta.yaml b/recipes/cramino/meta.yaml
index 32c4326163153..ae53c0a7a5a9d 100644
--- a/recipes/cramino/meta.yaml
+++ b/recipes/cramino/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.9.9" %}
+{% set version = "0.14.5" %}
 
 package:
   name: cramino
@@ -7,10 +7,12 @@ package:
 build:
   number: 0
   skip: true  # [osx]
+  run_exports:
+    - {{ pin_subpackage('cramino', max_pin="x.x") }}
 
 source:
   url: https://github.com/wdecoster/cramino/archive/v{{ version }}.tar.gz
-  sha256: 4892fcee0a5b4b0b7c49ed4f5f54168a15d5c0419e3eacee0d6155a207e194a1
+  sha256: d3b31ab76808ca76171e2539cfe30e66fe24cbd4af4ff9a941c282a0bc438032
 
 requirements:
   build:
@@ -18,9 +20,7 @@ requirements:
     - rust >=1.60
     - cmake
     - make
-  host:
     - openssl
-  run:
 
 test:
   commands:
diff --git a/recipes/craq/build.sh b/recipes/craq/build.sh
new file mode 100644
index 0000000000000..9becccee47f38
--- /dev/null
+++ b/recipes/craq/build.sh
@@ -0,0 +1,13 @@
+#!/bin/sh
+set -x -e
+
+# As CRAQ does not use standard packaging approach (Makefile.PL, Build.PL, ...), we need to keep CRAQ and its modules all together at the same place.
+# So CRAQ is copied in the share folder with all related modules (copy of the repo)
+CRAQ_DIR=${PREFIX}/share/CRAQ
+mkdir -p ${CRAQ_DIR}
+cp -r * ${CRAQ_DIR}
+chmod +x ${CRAQ_DIR}/bin/craq
+
+# Add the craq executable in the bin by softlinking the tool located in share.
+mkdir -p ${PREFIX}/bin
+ln -s ${CRAQ_DIR}/bin/craq ${PREFIX}/bin/craq
diff --git a/recipes/craq/meta.yaml b/recipes/craq/meta.yaml
new file mode 100755
index 0000000000000..1646266d28952
--- /dev/null
+++ b/recipes/craq/meta.yaml
@@ -0,0 +1,43 @@
+{% set name = "CRAQ" %}
+{% set version = "1.0.9" %}
+{% set sha256 = "83eaa8964fe62241caef334986bdeda0d45d3c4be2416351257c9599264d664d" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://github.com/JiaoLaboratory/CRAQ/archive/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  noarch: generic
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('craq', max_pin="x") }}
+
+requirements:
+  run:
+    - perl >=5
+    - python >=3.7
+    - minimap2 >=2.17
+    - python_circos
+
+test:
+  commands:
+    - craq -h | grep Usage
+
+about:
+  home: https://github.com/JiaoLaboratory/CRAQ
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: Pinpoint assembly errors for genomic assessing and correcting.
+  description: |
+    CRAQ (Clipping Reveals Assembly Quality) is a reference-free genome assembly evaluator that can assess the accuracy of assembled genomic sequences and provide detailed assembly quality assessment from multiple perspectives. It can report precise locations of small-scale Clip-based Regional Errors (CREs), large-scale Clip-based Structural Errors (CSEs), as well as regional and overall AQI metrics (R-AQI & S-AQI) for assembly evaluation. Through evaluating a large set of genome assemblies with different qualities, we classified genomes as following: AQI > 90, reference quality; AQI from 80-90, high quality; AQI from 60-80, draft quality; and AQI < 60, low quality. CRAQ also considered haplotype features which is important for identifying true misassembly. It can output coordinates of regional heterozygous variants (CRHs) and coordinates of structural heterozygous variants (CSHs) based on the ratio of clipped alignments and mapping coverage. Moreover, CRAQ detects potential chimeric contigs and break them at conflict breakpoints for assembly correction. This document has the information on how to run CRAQ.
+  doc_url: https://github.com/JiaoLaboratory/CRAQ
+  dev_url: https://github.com/JiaoLaboratory/CRAQ
+
+extra:
+  recipe-maintainers:
+    - juke34
diff --git a/recipes/crispector/meta.yaml b/recipes/crispector/meta.yaml
index eead4a143981d..0032615c4b7e3 100644
--- a/recipes/crispector/meta.yaml
+++ b/recipes/crispector/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.0.4" %}
+{% set version = "1.0.7" %}
 
 package:
   name: crispector
@@ -10,10 +10,12 @@ build:
     - crispector = crispector.cli:main
   noarch: python
   script: python -m pip install . --no-deps -vv
+  run_exports:
+    - {{ pin_subpackage('crispector', max_pin="x") }}
 
 source:
-  url: https://github.com/YakhiniGroup/crispector/archive/v{{ version }}.tar.gz
-  sha256: 66b4ecc6f73958221eed868200c00d3c39718e9a146c389da9fcbd16440f6f1f
+  url: https://github.com/YakhiniGroup/crispector/archive/refs/tags/V{{ version }}.tar.gz
+  sha256: f88a8807e9793c7fb9db341f5ba9f130e59f557ecac55b625eb0dcd61ad38b9c
 
 requirements:
   host:
@@ -35,6 +37,7 @@ requirements:
     - pandas >=0.24.2
     - statsmodels
     - jinja2
+    - mpmath >=1.3.0
 
 test:
   commands:
diff --git a/recipes/crispector2/meta.yaml b/recipes/crispector2/meta.yaml
new file mode 100644
index 0000000000000..cf882e1b1ee03
--- /dev/null
+++ b/recipes/crispector2/meta.yaml
@@ -0,0 +1,56 @@
+{% set version = "2.0.8" %}
+
+package:
+  name: crispector2
+  version: "{{ version }}"
+
+build:
+  number: 0
+  entry_points:
+    - crispector = crispector2.cli:main
+  noarch: python
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
+  run_exports:
+    - {{ pin_subpackage('crispector2', max_pin="x") }}
+
+source:
+  url: https://github.com/theAguy/crispector2/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 9ca7823cbd4decdd3b1bbe3bd4bb7c77e87142ce4d1df21f06565ee9ee465177
+
+requirements:
+  host:
+    - python >=3.8
+    - pip
+  run:
+    - python >=3.8
+    - biopython >=1.74, <=1.79 # Bio.SubsMat
+    - fastp
+    - python-edlib
+    - click >=7.0
+    - pyyaml >=5.1.2
+    - matplotlib-base >=3.1.2
+    - scipy >=1.2.1
+    - numpy >=1.12.1
+    - seaborn >=0.9.0
+    - plotly >=4.3.0
+    - pandas >=0.24.2
+    - statsmodels
+    - jinja2
+    - tqdm >=4.66.0
+    - mpmath
+
+test:
+  commands:
+    - crispector -h
+
+about:
+  home: https://github.com/theAguy/crispector2
+  # The license forbids redistribution, but the author has granted an exception, see
+  # https://github.com/bioconda/bioconda-recipes/pull/21129#issuecomment-605051102
+  license: free to academic and non-for-profit research work, non-commercial use, see LICENSE file
+  license_file: LICENSE
+  summary: "Accurate estimation of off-target editing activity from comparative NGS data"
+
+extra:
+  recipe-maintainers:
+    - theAguy
diff --git a/recipes/crispresso2/meta.yaml b/recipes/crispresso2/meta.yaml
index 323b09b143386..c6e2aa61cd9db 100644
--- a/recipes/crispresso2/meta.yaml
+++ b/recipes/crispresso2/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "2.2.13" %}
+{% set version = "2.3.1" %}
 
 package:
   name: crispresso2
@@ -7,10 +7,12 @@ package:
 build:
   skip: True  # [py2k]
   number: 0
+  run_exports:
+    - {{ pin_subpackage('crispresso2', max_pin='x') }}
 
 source:
   url: https://github.com/pinellolab/CRISPResso2/archive/v{{ version }}.tar.gz
-  sha256: fd94c606185675032eacb7835c2745d1332853a926a4b8ffd452b106fd96f902
+  sha256: e1f3f87e392529d441f0b3b6983600d643fbcdf40cde621eb24f40b3f7195fa4
 
 requirements:
   build:
@@ -29,8 +31,7 @@ requirements:
     - plotly
     - matplotlib-base
     - jinja2
-    - trimmomatic
-    - flash
+    - fastp
     - samtools
     - bowtie2
     - seaborn-base
@@ -46,3 +47,7 @@ about:
   license: Partners
   license_file: LICENSE.txt
   summary: "A software pipeline designed to enable rapid and intuitive interpretation of genome editing experiments"
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/crisprme/build.sh b/recipes/crisprme/build.sh
index cd80a4ea7cf0d..48c4a11527c52 100644
--- a/recipes/crisprme/build.sh
+++ b/recipes/crisprme/build.sh
@@ -5,6 +5,6 @@ mkdir -p "${PREFIX}/opt/crisprme"
 chmod -R 700 .
 unzip PostProcess/pickle_data.zip
 mv CRISTA_predictors.pkl PostProcess/
-cp crisprme.py "${PREFIX}/bin/"
+cp crisprme.py "${PREFIX}/bin/" && chmod +rx "${PREFIX}/bin/crisprme.py"
 cp crisprme_test_complete_package.sh "${PREFIX}/bin/"
-cp -R * "${PREFIX}/opt/crisprme/"
\ No newline at end of file
+cp -R * "${PREFIX}/opt/crisprme/"
diff --git a/recipes/crisprme/meta.yaml b/recipes/crisprme/meta.yaml
index 42d75db4871bf..6997ee9a682b8 100644
--- a/recipes/crisprme/meta.yaml
+++ b/recipes/crisprme/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "2.1.1" %}
+{% set version = "2.1.4" %}
 
 package:
   name: crisprme
@@ -6,12 +6,14 @@ package:
 
 source:
   url: https://github.com/pinellolab/CRISPRme/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: d59a970c8210cbc5854d77101fe23b5f0ead899b53bcc4c9e6cfb3579c02db26
-  
+  sha256: a2d8d374365ba90eeb81548b16b589f23bc9ee184cca447306efc12b3d1a97f8
+
 build:
+  run_exports:
+    - {{ pin_subpackage('crisprme', max_pin="x") }}
   number: 0
   noarch: generic
-  
+
 requirements:
   host:
     - unzip
@@ -46,6 +48,12 @@ test:
 
 about:
   home: https://github.com/pinellolab/CRISPRme
-  license: AGPL-3.0
+  license: AGPL-3.0-or-later
+  license_family: AGPL
   license_file: LICENSE
-  summary: CRISPRme, tool package for CRISPR experiments assessment and analysis.
\ No newline at end of file
+  summary: CRISPRme, tool package for CRISPR experiments assessment and analysis.
+  dev_url: https://github.com/pinellolab/CRISPRme
+
+extra:
+  identifiers:
+    - doi:10.1038/s41588-022-01257-y
diff --git a/recipes/crocodeel/meta.yaml b/recipes/crocodeel/meta.yaml
new file mode 100644
index 0000000000000..e6f885fdba070
--- /dev/null
+++ b/recipes/crocodeel/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "crocodeel" %}
+{% set version = "1.0.3" %}
+
+package:
+    name: {{ name }}
+    version: {{ version }}
+
+
+source:
+  url: https://github.com/metagenopolis/{{ name }}/archive/v{{ version }}.tar.gz
+  sha256: f9d7de8fe83ea3b645cc8f11c45d1ddf1d79fd163870f013282a11a862b45f77
+
+build:
+  noarch: python
+  number: 0
+  script: {{ PYTHON }} -m pip install . --no-deps -vv
+  run_exports:
+    - {{ pin_subpackage('crocodeel', max_pin="x.x") }}
+
+requirements:
+    host:
+        - python >=3.12
+        - poetry
+    run:
+        - python >=3.12
+        - pandas >=2.2
+        - numpy >=1.26
+        - joblib >=1.4
+        - scipy >=1.13
+        - scikit-learn >=1.3,<1.4
+        - matplotlib-base >=3.8
+        - tqdm >=4.66
+
+test:
+    commands:
+        - crocodeel test_install
+
+about:
+  home: https://github.com/metagenopolis/crocodeel
+  license: GPL-3.0-or-later
+  license_file: COPYING
+  summary: 'CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data'
+  description: |
+    CroCoDeEL is a tool that detects cross-sample (aka well-to-well) contamination in shotgun metagenomic data.
+    It accurately identifies contaminated samples but also pinpoints contamination sources and estimates contamination rates.
+    CroCoDeEL relies only on species abundance tables and does not need negative controls.
+  license_family: GPL3
diff --git a/recipes/cromshell/meta.yaml b/recipes/cromshell/meta.yaml
index ab752e4671bc6..050ac19669f61 100644
--- a/recipes/cromshell/meta.yaml
+++ b/recipes/cromshell/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "cromshell" %}
-{% set version = "2.0.0" %}
-{% set sha256 = "7e85a7e9c48c0bfa3bd395d055ff3062267933d76cde14be750fe339b50d5e09" %}
+{% set version = "2.1.1" %}
+{% set sha256 = "2dac45dd457f057304f848fd031355aedeb142bbdf8a57cce3ed43257c706a41" %}
 
 package:
   name: {{ name }}
@@ -9,6 +9,8 @@ package:
 build:
   noarch: python
   number: 0
+  run_exports:
+    - {{ pin_subpackage('cromshell', max_pin="x") }}
 
 source:
   url: https://github.com/broadinstitute/{{ name }}/archive/{{ version }}.tar.gz
diff --git a/recipes/crossmap/build.sh b/recipes/crossmap/build.sh
index 2dbf7cf108167..b634892e50b82 100644
--- a/recipes/crossmap/build.sh
+++ b/recipes/crossmap/build.sh
@@ -3,4 +3,4 @@
 rm -f lib/psyco_full.py
 rm -rf data test
 
-$PYTHON setup.py install --single-version-externally-managed --record=record.txt
+${PYTHON} -m pip install . -vvv --no-deps --no-build-isolation
diff --git a/recipes/crossmap/meta.yaml b/recipes/crossmap/meta.yaml
index d283a3ca926c7..d1809d5385aa7 100644
--- a/recipes/crossmap/meta.yaml
+++ b/recipes/crossmap/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "CrossMap" %}
-{% set version = "0.6.5" %}
-{% set sha256hash = "b16a942b38bf7f26e9b53bc6cddd5cfa7dee98e97f7ee8bb0dc699a4340aafbf" %}
+{% set version = "0.7.0" %}
+{% set sha256 = "fec5bc7537c6f767e39f7b8a176ceb522e10de4a79ebdd0d645ea0af948c4bd4" %}
 
 package:
   name: {{ name|lower }}
@@ -8,23 +8,22 @@ package:
 
 source:
   url: https://github.com/liguowang/CrossMap/archive/v{{ version }}.tar.gz
-  sha256: {{ sha256hash }}
+  sha256: {{ sha256 }}
 
 build:
   number: 0
   noarch: python
+  entry_points:
+    - CrossMap = cmmodule:crossmap
+  run_exports:
+    - {{ pin_subpackage('crossmap', max_pin="x.x") }}
 
 requirements:
   host:
-    - python >=3
-    - cython >=0.17
-    - numpy
-    - nose >=0.10.4
-    - pysam >=0.15
-    - bx-python
+    - python >=3.8
+    - pip
   run:
-    - python >=3
-    - cython >=0.17
+    - python >=3.8
     - numpy
     - pysam >=0.15
     - bx-python
@@ -33,23 +32,24 @@ requirements:
 
 test:
   commands:
-    - CrossMap.py bed -h
-    - CrossMap.py vcf -h
+    - CrossMap bed -h
+    - CrossMap vcf -h
 
 about:
-  home: http://crossmap.sourceforge.net
+  home: https://crossmap.sourceforge.net
   license: GPL-3.0-or-later
-  license_family: GPL
+  license_family: GPL3
   license_file: LICENSE.txt
   summary: "CrossMap is a program for convenient conversion of genome coordinates and genomeannotation files between assemblies."
+  dev_url: https://github.com/liguowang/CrossMap
+  doc_url: https://crossmap.readthedocs.io/en/latest/
 
 extra:
-  skip-lints:
-    - cython_needs_compiler
-    - cython_must_be_in_host
   identifiers:
     - usegalaxy-eu:crossmap_bam
     - usegalaxy-eu:crossmap_bed
     - usegalaxy-eu:crossmap_vcf
     - usegalaxy-eu:crossmap_wig
     - usegalaxy-eu:crossmap_gff
+    - doi:10.1093/bioinformatics/btt730
+    - biotools:crossmap
diff --git a/recipes/cstag-cli/meta.yaml b/recipes/cstag-cli/meta.yaml
new file mode 100644
index 0000000000000..91ec7c11fb99e
--- /dev/null
+++ b/recipes/cstag-cli/meta.yaml
@@ -0,0 +1,45 @@
+{% set name = "cstag-cli" %}
+{% set version = "1.0.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/cstag_cli-{{ version }}.tar.gz
+  sha256: 8c91f12b8b4b314f176dd24208dcb567ce78da6207cbcc5588952824e38f9a45
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv
+  number: 1
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin='x.x') }}
+
+requirements:
+  host:
+    - python >=3.7,<4.0
+    - poetry-core >=1.0.0
+    - pip
+  run:
+    - python >=3.7.0,<4.0.0
+    - pysam >=0.19.0
+    - cstag >=0.6.2
+
+test:
+  imports:
+    - cstag_cli
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/akikuno/cstag-cli
+  summary: Command line interface of cstag to manipulate the minimap2's CS tag
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - akikuno
diff --git a/recipes/cstag/meta.yaml b/recipes/cstag/meta.yaml
index 30964b8b3c1cb..056545dac83d6 100644
--- a/recipes/cstag/meta.yaml
+++ b/recipes/cstag/meta.yaml
@@ -1,25 +1,29 @@
 {% set name = "cstag" %}
-{% set version = "0.4.1" %}
+{% set version = "1.0.5" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/cstag-{{ version }}.zip
-  sha256: 4b92692dcb70aec9ecf2dd9d275eba2a6f08e25ab9abda9c620604f58a41beca
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/cstag-{{ version }}.tar.gz
+  sha256: 69aeb279da6143a8f7b9b42a92ae1978f752890c8d475c953077c09ce918774b
 
 build:
   noarch: python
   script: {{ PYTHON }} -m pip install . -vv
   number: 0
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin='x.x') }}
 
 requirements:
   host:
+    - python >=3.7,<4.0
+    - poetry-core >=1.0.0
     - pip
-    - python >=3.7
   run:
-    - python >=3.7
+    - python >=3.7.0,<4.0.0
+    - weasyprint >=52.5
 
 test:
   imports:
diff --git a/recipes/csvtk/meta.yaml b/recipes/csvtk/meta.yaml
index 86be503cd3e2d..75a19c78e343c 100644
--- a/recipes/csvtk/meta.yaml
+++ b/recipes/csvtk/meta.yaml
@@ -1,17 +1,21 @@
-{% set version = "0.26.0" %}
+{% set version = "0.30.0" %}
 
 package:
   name: csvtk
   version: {{ version }}
 
 build:
-  number: 0
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('csvtk', max_pin='x.x') }}
   
 source:
   - url: https://github.com/shenwei356/csvtk/releases/download/v{{ version }}/csvtk_darwin_amd64.tar.gz # [osx]
-    md5: 8c5c958e0178bd60c1bbc3a553582255 # [osx]
-  - url: https://github.com/shenwei356/csvtk/releases/download/v{{ version }}/csvtk_linux_amd64.tar.gz # [linux]
-    md5: 812cdfc09604d4685f2ab5aa39341597 # [linux]
+    md5: c415255e265ba0cd547806fdbda05652 # [osx]
+  - url: https://github.com/shenwei356/csvtk/releases/download/v{{ version }}/csvtk_linux_amd64.tar.gz # [linux and x86_64]
+    md5: 8f5877d4fbea89609d64bd2679956476 # [linux and x86_64]
+  - url: https://github.com/shenwei356/csvtk/releases/download/v{{ version }}/csvtk_linux_arm64.tar.gz # [linux and aarch64]
+    md5: 2a6dd840291d23971ff538eaf3de00ec # [linux and aarch64]
 
 test:
   commands:
@@ -23,6 +27,8 @@ about:
   license: MIT
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   skip-lints:
     - should_be_noarch_generic
     - should_not_be_noarch_source
diff --git a/recipes/curare/meta.yaml b/recipes/curare/meta.yaml
index c579d13c1e9f4..0458d942c20e0 100644
--- a/recipes/curare/meta.yaml
+++ b/recipes/curare/meta.yaml
@@ -1,12 +1,13 @@
-{% set version = "0.4.5" %}
+{% set name = "curare" %}
+{% set version = "0.6.0" %}
 
 package:
-  name: curare
+  name: {{ name|lower }}
   version: {{ version }}
 
 source:
   url: https://github.com/pblumenkamp/Curare/archive/refs/tags/{{ version }}.tar.gz
-  sha256: 12049b34ed918b6a202307d45d281037073066b664a9eb41cf301f4618f4c84d
+  sha256: e98935fce614bf0b8b3db4e9c65c9fbba999fab84e69e4158209b6319f59a0da
 
 build:
   number: 0
@@ -15,17 +16,21 @@ build:
   entry_points:
     - curare = curare.curare:main
     - curare_wizard = curare.curare_wizard:main
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   host:
-    - python >=3.9
+    - python >=3.10
     - pip
   run:
-    - snakemake=6.3
-    - mamba=0.13
-    - python=3.9
-    - pyyaml=5.4.1
-    - docopt=0.6.2
+    - snakemake =7.32.3
+    - mamba =1.5.3
+    - python =3.10
+    - pyyaml =6.0
+    - docopt =0.6.2
+    - progressbar2 =4.3.2
+    - biopython =1.83
 
 test:
   imports:
diff --git a/recipes/cured/build.sh b/recipes/cured/build.sh
new file mode 100644
index 0000000000000..dd694a0849030
--- /dev/null
+++ b/recipes/cured/build.sh
@@ -0,0 +1,6 @@
+#!/usr/bin/env bash
+
+mkdir -p "${PREFIX}/bin" "${PREFIX}/example_data"
+chmod +x bin/*
+cp bin/* "${PREFIX}/bin/"
+cp example_data/* "${PREFIX}/example_data/"
diff --git a/recipes/cured/meta.yaml b/recipes/cured/meta.yaml
new file mode 100644
index 0000000000000..4b3aac6d123c8
--- /dev/null
+++ b/recipes/cured/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "CURED" %}
+{% set version = "1.05" %}
+
+package:
+  name: {{ name|lower }}
+  version: '{{ version }}'
+
+source:
+  url: https://github.com/microbialARC/{{name}}/archive/refs/tags/v{{version}}.tar.gz
+
+  sha256: 0f0fb4a208a6fbff64187d9e0ccd3261bf820d441cf3fdc4dc97a458989e84d9
+
+build:
+  number: 0
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage("cured", max_pin="x") }}
+
+requirements:
+  run:
+    - blast ==2.15.0
+    - bwa ==0.7.17
+    - mlst ==2.23.0
+    - ncbi-datasets-cli ==15.28.0
+    - python ==3.10.13
+    - samtools ==1.18
+    - unitig-caller ==1.3.0
+    - biopython ==1.82
+
+test:
+  commands:
+    - CURED_Main.py -help
+    - CURED_FindREs.py -help
+
+about:
+  home: https://github.com/microbialARC/{{name}}
+  license: GPLv3
+  license_family: GPL
+  license_file: 'LICENSE'
+  summary: Classification Using Restriction Enzyme Diagnostics
+  dev_url: https://github.com/microbialARC/{{name}}
+
+extra:
+  recipe-maintainers:
+    - AhmedMoustafa
+    - erin-thei
+    - lizqian
diff --git a/recipes/customtkinter/meta.yaml b/recipes/customtkinter/meta.yaml
new file mode 100644
index 0000000000000..31b733fbe6f28
--- /dev/null
+++ b/recipes/customtkinter/meta.yaml
@@ -0,0 +1,48 @@
+{% set name = "customtkinter" %}
+{% set version = "5.2.2" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/customtkinter-{{ version }}.tar.gz
+  sha256: fd8db3bafa961c982ee6030dba80b4c2e25858630756b513986db19113d8d207
+
+build:
+  script: "{{ PYTHON }} -m pip install . --no-deps -vvv"
+  number: 0
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+
+requirements:
+  host:
+    - python
+    - setuptools >=42
+    - wheel
+    - pip
+  run:
+    - python
+    - darkdetect
+    - typing-extensions  # [py<=37]
+    - xorg-libx11
+    - packaging
+
+test:
+  imports:
+    - customtkinter
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://customtkinter.tomschimansky.com
+  summary: Create modern looking GUIs with Python
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - ypriverol
diff --git a/recipes/cutadapt/meta.yaml b/recipes/cutadapt/meta.yaml
index d25f79a3da2f0..5b7e6a9e62d14 100644
--- a/recipes/cutadapt/meta.yaml
+++ b/recipes/cutadapt/meta.yaml
@@ -1,17 +1,19 @@
-{% set version = "4.4" %}
+{% set version = "4.8" %}
 
 package:
   name: cutadapt
   version: {{ version }}
 
 source:
-  url: https://files.pythonhosted.org/packages/0d/45/88d84af8d51310227e5c5c835946ebc059ae9156502203ce0b64c95e4550/cutadapt-4.4.tar.gz
-  sha256: 4554157c673022e1c433fcd6e3b803008fef60c8e71c01215e4aa04b0f09fe83
+  url: https://files.pythonhosted.org/packages/c6/a7/7d5399e15747df9d203ecd12f510665db1a38b2bddac4e69eb715f2f90fe/cutadapt-4.8.tar.gz
+  sha256: ac852f6b5f2d1147d0d34bef2eaa5879776f81c69a35dd328a701aae39ec6034
 
 build:
-  number: 1
-  script: "{{ PYTHON }} -m pip install . --no-deps -vv"
-  skip: True  # [py27 or py36]
+  number: 0
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  skip: True  # [py < 38]
+  run_exports:
+    - {{ pin_subpackage("cutadapt", max_pin="x") }}
 
 requirements:
   build:
@@ -24,7 +26,7 @@ requirements:
   run:
     - python
     - xopen >=1.6.0
-    - dnaio >=0.10.0
+    - dnaio >=1.2.0
 
 test:
   imports:
@@ -34,12 +36,18 @@ test:
 
 about:
   home: https://cutadapt.readthedocs.io/
+  dev_url: https://github.com/marcelm/cutadapt
   license: MIT
+  license_family: MIT
+  license_file: LICENSE
   summary: Trim adapters from high-throughput sequencing reads
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   recipe-maintainers:
     - marcelm
   identifiers:
     - biotools:cutadapt
     - doi:10.14806/ej.17.1.200
+    - usegalaxy-eu:cutadapt
diff --git a/recipes/cutefc/meta.yaml b/recipes/cutefc/meta.yaml
new file mode 100644
index 0000000000000..39c976a89d87d
--- /dev/null
+++ b/recipes/cutefc/meta.yaml
@@ -0,0 +1,49 @@
+{% set version = "1.0.0" %}
+
+package:
+  name: cutefc
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/c/cuteFC/cuteFC-{{ version }}.tar.gz
+  sha256: c8cfc36d2b2195760d8feee2e3a8e79a885622c3e50f8ceb903d945d4e41e0ef
+
+build:
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage("cutefc", max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3
+    - pip
+  run:
+    - python >=3
+    - scipy
+    - pysam
+    - biopython
+    - cigar
+    - numpy
+    - pyvcf3
+    - scikit-learn
+
+test:
+  imports:
+    - benchmarks
+    - cuteFC
+  commands:
+    - cuteFC -h
+  requires:
+    - pip
+
+about:
+  home: https://github.com/tjiangHIT/cuteFC
+  summary: Regenotyping structural variants through an accurate and efficient force-calling method
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - Meltpinkg
diff --git a/recipes/cutesv/meta.yaml b/recipes/cutesv/meta.yaml
index 6f61dca55da15..7f9935d939f64 100644
--- a/recipes/cutesv/meta.yaml
+++ b/recipes/cutesv/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "2.0.3" %}
+{% set version = "2.1.1" %}
 
 package:
   name: cutesv
@@ -6,12 +6,14 @@ package:
 
 source:
   url: https://github.com/tjiangHIT/cuteSV/archive/cuteSV-v{{ version }}.tar.gz
-  sha256: b29115148636c551976ec6e97d03f4da9e2fd4e81a2ea4b8b2b817afb9bbbd52
+  sha256: ebba8ffe0943626a9c1606adeed37bec3a4c0816c4fb7af8d6d219d7bee2acd2
 
 build:
   number: 0
   noarch: python
-  script: {{ PYTHON }} -m pip install --no-deps --ignore-installed -vv .
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation -vvv .
+  run_exports:
+    - {{ pin_subpackage("cutesv", max_pin="x.x") }}
 
 requirements:
   host:
@@ -24,6 +26,8 @@ requirements:
     - pysam >=0.15.0
     - python >=3
     - pyvcf
+    - scikit-learn
+    - scipy
 
 test:
   commands:
diff --git a/recipes/cycle_finder/build.sh b/recipes/cycle_finder/build.sh
new file mode 100644
index 0000000000000..fa3eddd292189
--- /dev/null
+++ b/recipes/cycle_finder/build.sh
@@ -0,0 +1,5 @@
+#!/bin/sh
+
+mkdir -p $PREFIX/bin
+make CC=$CXX
+cp cycle_finder $PREFIX/bin/
diff --git a/recipes/cycle_finder/meta.yaml b/recipes/cycle_finder/meta.yaml
new file mode 100644
index 0000000000000..fb490d6dacdaf
--- /dev/null
+++ b/recipes/cycle_finder/meta.yaml
@@ -0,0 +1,46 @@
+{% set version = "1.0.0" %}
+{% set sha256 = "1254695585e1211b279ca036ac24594100ef1d21998e9fe1739f83364fbb7942" %}
+
+
+package:
+  name: cycle_finder
+  version: {{ version }}
+
+source:
+  sha256: '{{sha256}}'
+  url: https://github.com/rkajitani/cycle_finder/archive/refs/tags/v{{ version }}.tar.gz
+
+build:
+  number: 0
+  skip: True # [osx]
+
+requirements:
+  build:
+    - make
+    - openmp
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - libgomp      # [linux]
+    - llvm-openmp  # [osx]
+  host:
+    - openmp
+  run:
+    - openmp
+    - zlib
+    - gzip
+    - bzip2
+    - cd-hit
+    - blast
+    - trf
+    - jellyfish
+
+test:
+  commands:
+    - cycle_finder -h
+
+about:
+  home: https://github.com/rkajitani/cycle_finder
+  license: GPL-3.0
+  license_file: LICENSE
+  license_family: GPL
+  summary: A de novo analysis tool for tandem and interspersed repeats based on cycle-finding
diff --git a/recipes/cytoscape/meta.yaml b/recipes/cytoscape/meta.yaml
index d6b6a07126a1d..068d4c8f5ba8c 100644
--- a/recipes/cytoscape/meta.yaml
+++ b/recipes/cytoscape/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "cytoscape" %}
-{% set version = "3.9.1" %}
-{% set sha256 = "0b20ac377dc01e6b0f7067104c2e463d8f834e50ee19dc302bb101dfcbc342a1" %}
+{% set version = "3.10.2" %}
+{% set sha256 = "561380f7429aa806941027897fd1ca902597c4dadf4bf1bbd3141a39f2bd3f3e" %}
 
 package:
   name: {{ name }}
@@ -11,19 +11,21 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 1
+  number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('cytoscape', max_pin="3") }}
 
 requirements:
   build:
     - gettext
   host:
-    - openjdk >=11,<=12
+    - openjdk >=17,<20
     - fontconfig
     - freetype
     - font-ttf-dejavu-sans-mono
   run:
-    - openjdk >=11,<=12
+    - openjdk >=17,<20
     - xorg-libxtst
     - fontconfig
     - freetype
diff --git a/recipes/cytosnake/meta.yaml b/recipes/cytosnake/meta.yaml
new file mode 100644
index 0000000000000..a683506c4c14b
--- /dev/null
+++ b/recipes/cytosnake/meta.yaml
@@ -0,0 +1,62 @@
+{% set name = "cytosnake" %}
+{% set version = "0.0.2" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://github.com/WayScience/CytoSnake/archive/v{{ version }}.tar.gz"
+  sha256: d583612e3142c52a6339ad203675ece105941e955c1f59862450ba5e3a25d35b
+
+
+build:
+  number: 0
+  script: "{{ PYTHON }} -m pip install . -vv"
+  noarch: python
+  ignore_prefix_files:
+    - docs
+    - tests
+  run_exports:
+     - {{ pin_subpackage('cytosnake', max_pin="x.x") }}
+
+requirements:
+  build:
+    - python =3.10
+    - pip
+    - setuptools
+  host:
+    - python =3.10
+  run:
+    - python =3.10.*
+    - pip
+    - pytest >=7.0
+    - numpy >=1.20
+    - mamba >=1.5.0
+    - pyyaml >=6.0.0
+    - snakemake >=7.32
+
+test:
+   imports:
+     - cytosnake
+   commands:
+     - pip check
+   requires:
+     - pip
+
+about:
+  home: https://github.com/WayScience/CytoSnake
+  license: CC-BY-4.0
+  license_file: LICENSE.md
+  summary: Orchestrating high-dimensional cell morphology data processing pipelines
+  doc_url: https://cytosnake.readthedocs.io/
+  tags:
+    - workflow
+    - pipeline
+    - cell-morphology
+    - microscopy-images
+
+extra:
+   recipe-maintainers:
+     - axiomcura
+     - gwaybio
diff --git a/recipes/cyvcf2/meta.yaml b/recipes/cyvcf2/meta.yaml
index a9a4ca590cbb9..907bd8a771610 100644
--- a/recipes/cyvcf2/meta.yaml
+++ b/recipes/cyvcf2/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "cyvcf2" %}
-{% set version = "0.30.22" %}
-{% set sha256 = "324613c41f9bbb322533f351fd8d33a4454b391d76841da0a28a7075a0e15d84" %}
+{% set version = "0.31.0" %}
+{% set sha256 = "1480091ad055e8715e8fbbd9a93f3c10655d87a1716ffd122657f42355a23ea4" %}
 
 package:
   name: {{ name }}
@@ -16,19 +16,22 @@ source:
 build:
   number: 0
   skip: True  # [py < 37]
-  script: {{ PYTHON }} -m pip install . --use-pep517 -vv
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv
   entry_points:
     - cyvcf2 = cyvcf2.__main__:cli
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   build:
     - {{ compiler('c') }}
+    - autoconf
+    - automake
+    - make
   host:
     - python
     - cython
     - pip
-    - setuptools
-    - wheel
     - curl
     - zlib
     - htslib >=1.10
@@ -38,20 +41,26 @@ requirements:
     - python
     - coloredlogs
     - click
-    - numpy
+    - {{ pin_compatible('numpy') }}
 
 test:
   imports:
     - cyvcf2
+  commands:
+    - cyvcf2 --help
 
 about:
   home: "https://github.com/brentp/cyvcf2/"
-  summary: A cython wrapper around htslib built for fast parsing of Variant Call Format (VCF) files
+  summary: "A cython wrapper around htslib built for fast parsing of Variant Call Format (VCF) files"
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   doc_url: "https://brentp.github.io/cyvcf2/"
+  dev_url: "https://github.com/brentp/cyvcf2/"
 
 extra:
   identifiers:
     - doi:10.1093/bioinformatics/btx057
     - biotools:cyvcf2
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/cyvcf2/patches/setup.py.patch b/recipes/cyvcf2/patches/setup.py.patch
index 8d9ff3497ea6c..c0454bda7a141 100644
--- a/recipes/cyvcf2/patches/setup.py.patch
+++ b/recipes/cyvcf2/patches/setup.py.patch
@@ -1,43 +1,24 @@
 --- a/setup.py
 +++ b/setup.py
-@@ -7,10 +7,6 @@ import platform
- import pkg_resources
- from setuptools import setup, Extension
+@@ -10,13 +10,6 @@ from setuptools import setup, Extension, Command
+ from setuptools.command.build_ext import build_ext
+ from setuptools.command.sdist import sdist
  
 -if sys.version_info.major == 2 and sys.version_info.minor != 7:
--    sys.stderr.write("ERROR: cyvcf2 is only for python 2.7 or greater you are running %d.%d\n", (sys.version_info.major, sys.version_info.minor))
+-    sys.stderr.write(
+-        "ERROR: cyvcf2 is only for python 2.7 or greater you are running %d.%d\n",
+-        (sys.version_info.major, sys.version_info.minor),
+-    )
 -    sys.exit(1)
 -
  import numpy as np
  
  
-@@ -42,18 +38,8 @@ def no_cythonize(extensions, **_ignore):
-     return extensions
+@@ -236,6 +229,7 @@ htslib_include_dirs = ["htslib", "htslib/htslib"]
  
- 
--# Build the Cython extension by statically linking to the bundled htslib
--sources = [
--    x for x in glob.glob('htslib/*.c')
--    if not any(e in x for e in ['irods', 'plugin'])
--]
--sources += glob.glob('htslib/cram/*.c')
--sources += glob.glob('htslib/htscodecs/htscodecs/*.c')
--# Exclude the htslib sources containing main()'s
--sources = [x for x in sources if not x.endswith(('htsfile.c', 'tabix.c', 'bgzip.c'))]
--sources.append('cyvcf2/helpers.c')
--
--extra_libs = []
-+sources = ['cyvcf2/helpers.c']
+ # Build the Cython extension by statically linking to the bundled htslib
+ sources = ["cyvcf2/cyvcf2.pyx", "cyvcf2/helpers.c"]
 +extra_libs = ['hts']
- if platform.system() != 'Darwin':
-     extra_libs.append('crypt')
- if bool(int(os.getenv("LIBDEFLATE", 0))):
-@@ -65,7 +51,7 @@ extensions = [Extension("cyvcf2.cyvcf2",
-                         extra_compile_args=["-Wno-sign-compare", "-Wno-unused-function",
-                             "-Wno-strict-prototypes",
-                             "-Wno-unused-result", "-Wno-discarded-qualifiers"],
--                        include_dirs=['htslib', 'cyvcf2', np.get_include()])]
-+                        include_dirs=['cyvcf2', np.get_include()])]
- 
  
- CYTHONIZE = bool(int(os.getenv("CYTHONIZE", 0)))
+ extensions = [
+     Extension(
diff --git a/recipes/dajin2/meta.yaml b/recipes/dajin2/meta.yaml
new file mode 100644
index 0000000000000..296f14c1ab427
--- /dev/null
+++ b/recipes/dajin2/meta.yaml
@@ -0,0 +1,62 @@
+{% set name = "DAJIN2" %}
+{% set version = "0.4.6" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/dajin2-{{ version }}.zip
+  sha256: 49ff8c3e1436d2f8dc9037a9270a836745e1753e3dc1a64299e3272a9481836c
+
+build:
+  entry_points:
+    - DAJIN2=DAJIN2.main:execute
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('dajin2', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python
+    - pip
+  run:
+    - python
+    - certifi
+    - numpy >=1.24.0
+    - scipy >=1.10.0
+    - pandas >=1.0.0
+    - openpyxl >=3.1.0
+    - rapidfuzz >=3.6.0
+    - scikit-learn >=1.3.0
+    - mappy >=2.24
+    - pysam >=0.21.0
+    - flask >=2.2.0
+    - waitress >=2.1.0
+    - jinja2 >=3.1.0
+    - plotly >=5.19.0
+    - python-kaleido >=0.2.0
+    - cstag >=1.0.0
+    - midsv >=0.11.0
+    - wslpath >=0.4.1
+
+test:
+  imports:
+    - DAJIN2
+  commands:
+    - pip check
+    - DAJIN2 --help
+  requires:
+    - pip
+
+about:
+  home: https://github.com/akikuno/DAJIN2
+  summary: One-step genotyping tools for targeted long-read sequencing
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - akikuno
diff --git a/recipes/daligner/build.sh b/recipes/daligner/build.sh
index 2c31ef8741127..7566b610c32b7 100644
--- a/recipes/daligner/build.sh
+++ b/recipes/daligner/build.sh
@@ -7,16 +7,14 @@ make
 binaries="\
  daligner  \
  HPC.daligner  \
- LAsort  \
- LAmerge  \
- LAsplit  \
+ LA2ONE  \
  LAcat  \
- LAshow  \
- LAdump  \
  LAcheck  \
- LAa2b  \
- LAb2a  \
- dumpLA
+ LAmerge  \
+ LAshow  \
+ LAsort  \
+ LAsplit  \
+ ONE2LA  
 "
 
 for i in $binaries; do cp $i $PREFIX/bin && chmod +x $PREFIX/bin/$i; done
diff --git a/recipes/daligner/meta.yaml b/recipes/daligner/meta.yaml
index 12f00fb709ddf..71e9ba8da2f82 100644
--- a/recipes/daligner/meta.yaml
+++ b/recipes/daligner/meta.yaml
@@ -2,9 +2,9 @@
   # DALIGNER author does not create versioned releases. This is the
   # recommended version format from the software README, based on date of
   # commit
-{% set version = "1.0.20200322" %}
-{% set commit = "477d5b92459c7e22baf2e15af712b70ee54c838b" %}
-{% set sha256 = "53bbab48d8a52db9a7df2ef4357607ebed0855e64d4b9600ee3d39e6bc3b6238" %}
+{% set version = "1.0.20230620" %}
+{% set commit = "f9a35a82855abaddd49d509a75904dbf0fc46d60" %}
+{% set sha256 = "3cf7e92a83c346aa7bb2bcaec640f73891c9d90583c1c3e28016670313b50215" %}
 
 
 package:
@@ -15,7 +15,9 @@ package:
   version: {{ version }}
 
 build:
-  number: 4
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin=None) }}
 source:
   sha256: {{ sha256 }}
   url: https://github.com/thegenemyers/DALIGNER/archive/{{ commit }}.tar.gz
@@ -36,7 +38,6 @@ test:
     - LAsplit 2>&1 | grep Usage
     - LAcheck 2>&1 | grep Usage
     - HPC.daligner 2>&1 | grep Usage
-    - dumpLA 2>&1 | grep Usage
 
 about:
   home: 'https://github.com/thegenemyers/DALIGNER'
diff --git a/recipes/dart/build.sh b/recipes/dart/build.sh
index ab1901877606f..641bf8a605d82 100755
--- a/recipes/dart/build.sh
+++ b/recipes/dart/build.sh
@@ -1,6 +1,11 @@
 #!/bin/bash
 mkdir -p ${PREFIX}/bin
 
+ARCH_BUILD="-m64 -msse4.1"
+case $(uname -m) in
+    arm64|aarch64) ARCH_BUILD="" ;;
+esac
+
 #index
 pushd src/BWT_Index
 make CC=$CC FLAGS="$CFLAGS" LIBS="$LDFLAGS -lm -lz"
@@ -14,6 +19,6 @@ popd
 
 #dart
 pushd src
-make CXX=$CXX FLAGS="$CXXFLAGS -Wall -D NDEBUG -O3 -m64 -msse4.1 -fPIC" LIB="$LDFLAGS -lz -lm -lbz2 -llzma -lpthread"
+make CXX=$CXX FLAGS="$CXXFLAGS -Wall -D NDEBUG -O3 $ARCH_BUILD -fPIC" LIB="$LDFLAGS -lz -lm -lbz2 -llzma -lpthread"
 cp dart $PREFIX/bin
 
diff --git a/recipes/dart/meta.yaml b/recipes/dart/meta.yaml
index f444a029c9ea5..a6f2aa00531a7 100644
--- a/recipes/dart/meta.yaml
+++ b/recipes/dart/meta.yaml
@@ -9,7 +9,9 @@ source:
   sha256: '847d5e0a7e10162583fcf7168d31924d38290b5364e08c4a9cdd6653da73c64f'
 
 build:
-  number: 4
+  number: 5
+  run_exports:
+    - {{ pin_subpackage("dart", max_pin='x.x') }}
 
 requirements:
   build:
@@ -42,3 +44,6 @@ about:
 extra:
   identifiers:
     - doi:10.1093/bioinformatics/btx558
+
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/das_tool/meta.yaml b/recipes/das_tool/meta.yaml
index 2fdb95251dd2e..6aab0c2d4911b 100644
--- a/recipes/das_tool/meta.yaml
+++ b/recipes/das_tool/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "DAS_Tool" %}
-{% set version = "1.1.6" %}
-{% set sha256 = "a4c02f6789e7f6ca61e0b563261d5f17f12e1b931157a4ae0f413ffdea6eacfb" %}
+{% set version = "1.1.7" %}
+{% set sha256 = "3633b69242209ceee9cd523e3458adbe89da9c52ecd8724afef2e2099923c56c" %}
 
 package:
   name: {{ name|lower }}
@@ -16,6 +16,8 @@ build:
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage('das_tool', max_pin="x") }}
 
 requirements:
   host:
@@ -30,7 +32,6 @@ requirements:
     - prodigal >=2.6.3
     - blast >=2.7.1
     - diamond >=0.9.14
-
   run:
     - codeutils  # [osx]
     - unzip
diff --git a/recipes/dbcan/meta.yaml b/recipes/dbcan/meta.yaml
index e9856eac10155..4c247128ceb5f 100644
--- a/recipes/dbcan/meta.yaml
+++ b/recipes/dbcan/meta.yaml
@@ -1,29 +1,40 @@
 {% set name = "dbcan" %}
-{% set version = "4.0.0" %}
+{% set version = "4.1.4" %}
 
 package:
   name: "{{ name|lower }}"
   version: {{ version }}
 
 source:
+  # the sha256 sum is generated by doing 
+  # wget -0- [URL] | shasum -a 256
   url: https://github.com/linnabrown/run_dbcan/releases/download/{{ version }}/dbcan-{{ version }}.tar.gz
-  sha256: c90e99168fa3414696575b8f5a6c2862173151d1f0d7246ebd5713704b597435
+  sha256: 12dc906b56c3b1bfea667aa617d46d3f292857fc360730e4fe1d35f5b5557215
+
+
 build:
   number: 0
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
   noarch: python
+  entry_points:
+    - run_dbcan = dbcan.cli.run_dbcan:cli_main
+    - cgc_standard2json = dbcan.cli.cgc_process_json:main
+    - syntenic_plot = dbcan.cli.syntenic_plot:main
+    - dbcan_utils = dbcan.utils.utils:main
+    - dbcan_plot = dbcan.utils.plots:main
+    - dbcan_asmfree = dbcan.utils.diamond_unassembly:main
+    - dbcan_build = dbcan.utils.dbcan_build:main
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   host:
-    - natsort
     - pip
-    - python
-    - setuptools
-    - setuptools_scm_git_archive
-
+    - python >=3.6
+    - hatchling
   run:
     - natsort
-    - python
+    - python >=3.6
     - diamond
     - hmmer
     - prodigal
@@ -32,18 +43,32 @@ requirements:
     - numpy >1.19
     - biopython
     - pandas
+    - tqdm
+    - openpyxl
+    - matplotlib-base
+    - session-info
+    - blast
 
 test:
   imports:
     - dbcan
+  commands:
+    - run_dbcan --help
 
 about:
-  home: http://bcb.unl.edu/dbCAN2/
+  home: https://bcb.unl.edu/dbCAN2/
   dev_url: https://github.com/linnabrown/run_dbcan
-  license: GPLv3
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
-  summary: Standalone version of dbCAN annotation tool for automated CAZyme annotation
+  summary: "Standalone version of dbCAN annotation tool for automated CAZyme annotation"
+  doc_url: https://dbcan.readthedocs.io/en/latest/
 
 extra:
   recipe-maintainers:
-    - Le Huang
+    - linnabrown
+  identifiers:
+    - doi:10.1093/nar/gkx894
+    - doi:10.1093/nar/gky418
+    - doi:10.1093/nar/gkad328
+    - biotools:dbcan2
\ No newline at end of file
diff --git a/recipes/dbcanlight/meta.yaml b/recipes/dbcanlight/meta.yaml
new file mode 100644
index 0000000000000..feb9db4e3aac6
--- /dev/null
+++ b/recipes/dbcanlight/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "dbcanLight" %}
+{% set version = "1.0.2" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/chtsai0105/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: da8a46553010e625e0a8c5db218876b1b339a153750341f110f7883dd961c340
+
+build:
+  number: 0
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv
+  run_exports:
+      - {{ pin_subpackage(name|lower, max_pin="x") }}
+
+requirements:
+  host:
+    - pip
+    - python
+    - setuptools
+  run:
+    - biopython >=1.79
+    - python >=3.7
+    - importlib_metadata
+    - pyhmmer >=0.10.2
+
+test:
+  commands:
+    - dbcanLight -h
+    - dbcanLight-hmmparser -h
+    - dbcanLight-subparser -h
+
+about:
+  home: https://github.com/chtsai0105/dbcanLight/tree/main
+  license: MIT
+  license_file: LICENSE
+  summary: A lightweight rewrite of run_dbcan
+  description: |
+    dbcanlight uses the hmmsearch module in pyhmmer to discover CAZymes and 
+    potential substrates from a peptide sequences.
+
+extra:
+  recipe-maintainers:
+    - chtsai0105
diff --git a/recipes/ddocent/meta.yaml b/recipes/ddocent/meta.yaml
index 643ad6a48b5f6..2052b9f0fa70d 100644
--- a/recipes/ddocent/meta.yaml
+++ b/recipes/ddocent/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "2.9.4" %}
-{% set sha256 = "4d44f72ad9c4bee3587f58ff7a18a972a5e31063396c3200705c72f02c4ee96b" %}
+{% set version = "2.9.8" %}
+{% set sha256 = "7b4a1b56a86ca584422a8318239d2491f9b57abb3e94bc782e7e806ed642afdc" %}
 
 package:
   name: ddocent
@@ -8,14 +8,14 @@ package:
 source:
   url: https://github.com/jpuritz/dDocent/archive/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
-    
+
 build:
-  number: 1
+  number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('ddocent', max_pin="x") }}
 
 requirements:
-  build:
-  host:
   run:
     - fastp >=0.20.0
     - seqtk >=1.3
@@ -30,7 +30,7 @@ requirements:
     - rainbow
     - cd-hit
     - bedtools >=2.26.0
-    - vcflib >=0.1.11
+    - vcflib >=0.1.11, <1.0.4
     - gnuplot
     - parallel
     - pear
@@ -42,10 +42,14 @@ test:
   commands:
     - "samtools --version"
     - "dDocent --help"
+
 about:
-  home: "http://ddocent.com"
-  license: "The MIT License (MIT)"
-  summary: " dDocent is  an interactive bash wrapper to QC, assemble, map, and call SNPs from all types of RAD data"
+  home: "https://ddocent.com"
+  license: MIT
+  license_family: MIT
+  summary: "dDocent is an interactive bash wrapper to QC, assemble, map, and call SNPs from all types of RAD data"
+  dev_url: https://github.com/jpuritz/dDocent
+  doc_url: https://www.ddocent.com/UserGuide/
 
 extra:
   container:
diff --git a/recipes/ddrage/meta.yaml b/recipes/ddrage/meta.yaml
index 87d3345a7373c..a4046dab43b7f 100644
--- a/recipes/ddrage/meta.yaml
+++ b/recipes/ddrage/meta.yaml
@@ -1,17 +1,19 @@
-{% set version = "1.7.1" %}
+{% set version = "1.8.1" %}
 
 package:
   name: ddrage
   version: {{ version }}
 
 source:
-  url: https://bitbucket.org/genomeinformatics/rage/get/{{ version }}.tar.gz
-  sha256: 4ae5a34428658087ca70ad29ae8d3c7a3b55170bfa419d3adcf727fe807d93f3
+  url: https://files.pythonhosted.org/packages/f8/bf/a3156beda9476a3ed69d1fd049465f70cad5f3df1de0a0efeb55c401f0e3/ddrage-{{ version }}.tar.gz
+  sha256: a08962227144a8de0d47b8dbfb51aaf692660d5a7c519a11561b91c6217186ac
 
 
 build:
   noarch: python
   number: 0
+  run_exports:
+    - {{ pin_subpackage("ddrage", max_pin="x") }}
   script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
   entry_points:
     - rage = ddrage.__main__:main
diff --git a/recipes/dechat/build.sh b/recipes/dechat/build.sh
new file mode 100644
index 0000000000000..afa7523a8daa5
--- /dev/null
+++ b/recipes/dechat/build.sh
@@ -0,0 +1,13 @@
+#!/usr/bin/env bash
+
+mkdir -p ${PREFIX}/bin
+
+if [ "$(uname)" == "Darwin" ]; then
+    cp -f ${SRC_DIR}/bin/dechat ${PREFIX}/bin/
+else
+    mkdir build && cd build
+    cmake -DCMAKE_INSTALL_PREFIX:PATH="${PREFIX}" -DKSIZE_LIST="32 64 96 128 160 192" ..
+    make -j"${CPU_COUNT}"
+    chmod 755 ${SRC_DIR}/bin/dechat
+    cp -f ${SRC_DIR}/bin/dechat ${PREFIX}/bin/
+fi
diff --git a/recipes/dechat/meta.yaml b/recipes/dechat/meta.yaml
new file mode 100644
index 0000000000000..190e22d63e07b
--- /dev/null
+++ b/recipes/dechat/meta.yaml
@@ -0,0 +1,44 @@
+{% set name = "dechat" %}
+{% set version = "1.0.0" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/LuoGroup2023/DeChat/releases/download/v{{ version }}/{{ name }}.tar.gz
+  sha256: 68469147b5386272a6a419eaa7fa7bafb4ddfe03a7ee57da795764b0b31f3845
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('dechat', max_pin="x") }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - make
+    - cmake
+  host:
+    - zlib
+    - boost-cpp ==1.67.0 
+    - sparsehash
+    - pkg-config
+    - libdivsufsort
+    - hdf5
+  run:
+    - boost-cpp ==1.67.0  # [osx]
+    - libdivsufsort  # [osx]
+    - hdf5
+
+test:
+  commands:
+    - (dechat -h || true)
+
+about:
+  home: "https://github.com/LuoGroup2023/DeChat"
+  license: MIT
+  license_family: MIT
+  summary: Repeat and haplotype aware error correction in nanopore sequencing reads with Dechat
+  dev_url: "https://github.com/LuoGroup2023/DeChat"
diff --git a/recipes/decom/meta.yaml b/recipes/decom/meta.yaml
new file mode 100644
index 0000000000000..7656ee92299a7
--- /dev/null
+++ b/recipes/decom/meta.yaml
@@ -0,0 +1,61 @@
+{% set name = "decOM" %}
+{% set version = "0.0.32" %}
+
+package:
+  name: decom
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: c9efaa97b7abfe6f19f01a199ca6c7a7b32ec699f886d226667b8b5fe562dd88
+
+build:
+  run_exports:
+    - {{ pin_subpackage('decom', max_pin="x") }}
+  number: 0
+  noarch: python
+  entry_points:
+    - decOM = decOM.__main__:main
+    - decOM-aOralOut = decOM.aOralOut.__main__:main
+    - decOM-format = decOM.format.__main__:main
+    - decOM-LOO = decOM.LOO.__main__:main
+    - decOM-CV = decOM.CV.__main__:main
+    - decOM-MST = decOM.MST.__main__:main
+  script: "{{ PYTHON }} -m pip install . -vv"
+
+requirements:
+  host:
+    - pip
+    - python
+  run:
+    - colorama
+    - dask >=2021.12.0
+    - importlib_resources >=5.4.0
+    - python-kaleido
+    - numpy >=1.7
+    - pandas
+    - plotly >=5.5.0
+    - python
+    - git
+
+test:
+  commands:
+    - decOM --help
+    - decOM-aOralOut --help
+    - decOM-format --help
+    - decOM-LOO --help
+    - decOM-CV --help
+    - decOM-MST --help
+
+about:
+  home: "https://github.com/CamilaDuitama/decOM"
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "decOM: Similarity-based microbial source tracking for contamination assessment of ancient oral samples using k-mer-based methods"
+  doc_url: "https://github.com/CamilaDuitama/decOM" 
+  dev_url: "https://camiladuitama.github.io/gradfolio/"
+
+extra:
+  recipe-maintainers:
+    - CamilaDuitama
diff --git a/recipes/decoupler/meta.yaml b/recipes/decoupler/meta.yaml
deleted file mode 100644
index 5b35ee32e506d..0000000000000
--- a/recipes/decoupler/meta.yaml
+++ /dev/null
@@ -1,44 +0,0 @@
-{% set name = "decoupler" %}
-{% set version = "1.4.0" %}
-
-package:
-  name: {{ name|lower }}
-  version: {{ version }}
-
-source:
-  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/decoupler-{{ version }}.tar.gz
-  sha256: ecb350a2f4717fdcfc3ad8e0e1ed3faa8214d28ff7d2f3ff90b195c91d826433
-
-build:
-  noarch: python
-  script: {{ PYTHON }} -m pip install . -vv
-  number: 0
-
-requirements:
-  host:
-    - python >=3.6
-    - pip
-  run:
-    - python >=3.6
-    - numba
-    - tqdm
-    - anndata
-    - typing-extensions
-
-test:
-  imports:
-    - decoupler
-  commands:
-    - pip check
-  requires:
-    - pip
-
-about:
-  home: https://github.com/saezlab/decoupler-py
-  summary: Ensemble of methods to infer biological activities from omics data
-  license: GPL-3.0
-  license_file: LICENSE
-
-extra:
-  recipe-maintainers:
-    - pcm32
diff --git a/recipes/deeparg/meta.yaml b/recipes/deeparg/meta.yaml
index 8ec26a83b8fcf..2da747b7cb601 100644
--- a/recipes/deeparg/meta.yaml
+++ b/recipes/deeparg/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.0.2" %}
+{% set version = "1.0.4" %}
 
 package:
   name: deeparg
@@ -6,12 +6,16 @@ package:
 
 source:
   url: https://pypi.io/packages/source/d/deeparg/DeepARG-{{version}}.tar.gz
-  sha256: 921835da1ec8a6caea1c6df0070dcda9fc0fe3b2681e2c5f3c7996c99b96bfe8
+  sha256: 85df343a76b19b109b02d0b7784b39132531712e8f0a0fc87091f98bdacdd30d
 
 build:
-  script: python -m pip install .
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
   noarch: python
-  number: 1
+  number: 0
+  entry_points:
+    - deeparg = deeparg.entry:main
+  run_exports:
+    - {{ pin_subpackage('deeparg', max_pin="x") }}
 
 requirements:
   host:
@@ -24,7 +28,8 @@ requirements:
     - joblib >=0.14.1
     - biopython >=1.68
     - ete3 >=3.1.2
-    - tqdm >=4.62.3
+    # tqdm pinning to <4.65 can be removed once https://github.com/gaarangoa/deeparg/issues/1 is resolved.
+    - tqdm >=4.62.3,<4.65
     - nolearn >=0.6.1
     - lasagne >=0.1
     - scikit-learn >=0.19.2
@@ -41,7 +46,7 @@ test:
     - deeparg -h
 
 about:
-  home: https://bitbucket.org/gusphdproj/deeparg-ss/
+  home: https://github.com/gaarangoa/deeparg
   license: MIT
   license_family: MIT
   license_file: "LICENSE.txt"
diff --git a/recipes/deepbgc/meta.yaml b/recipes/deepbgc/meta.yaml
index 16f1f936817d3..e2fc7ea4a628a 100644
--- a/recipes/deepbgc/meta.yaml
+++ b/recipes/deepbgc/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "deepbgc" %}
-{% set version = "0.1.30" %} # remember to update sha256 hash as well
+{% set version = "0.1.31" %} # remember to update sha256 hash as well
 {% set file_ext = "tar.gz" %}
 
 package:
@@ -8,14 +8,16 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.{{ file_ext }}
-  sha256: '676d03171087d7ca6187be304dae4e4aaabcdd33ee5b88363a33f28c7a8bd602'
+  sha256: 'f294736ca63790a0429a2802457774da9c07e0b42dee8b2963f42f77ccb06255'
 
 build:
   noarch: python
-  number: 2
+  number: 0
   entry_points:
     - deepbgc = deepbgc.main:main
   script: python setup.py install --single-version-externally-managed --record=record.txt
+  run_exports:
+    - {{ pin_subpackage('deepbgc', max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/deepdirect/meta.yaml b/recipes/deepdirect/meta.yaml
new file mode 100644
index 0000000000000..4c7991b115f74
--- /dev/null
+++ b/recipes/deepdirect/meta.yaml
@@ -0,0 +1,42 @@
+{% set name = "deepdirect" %}
+{% set version = "0.2.5" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/deepdirect-{{ version }}.tar.gz
+  sha256: ab41f3f53161193146681d477f2412ebdb663bbf76c350e195a05efbb9f032dc
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('deepdirect', max_pin="x.x") }}
+    
+requirements:
+  host:
+    - python >=3.8
+    - setuptools
+    - wheel
+    - pip
+  run:
+    - python >=3.8
+    - tensorflow >=2.4.0
+    - keras >=2.4.0
+
+test:
+  imports:
+    - deepdirect
+
+about:
+  home: https://github.com/Jappy0/deepdirect
+  summary: In silico approach to generate mutations for protein complexes towards a specified direction (increase/decrease) in binding affinity.
+  license: GPL-2.0
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - Jappy0
\ No newline at end of file
diff --git a/recipes/deepfplearn/meta.yaml b/recipes/deepfplearn/meta.yaml
index 2db5b6fb1b450..e07d4955d6580 100644
--- a/recipes/deepfplearn/meta.yaml
+++ b/recipes/deepfplearn/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "deepFPlearn" %}
-{% set version = "1.2" %}
+{% set version = "2.0" %}
 
 package:
   name: {{ name | lower }}
@@ -7,21 +7,25 @@ package:
 
 source:
   url: https://github.com/yigbt/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 1f62b049c0ae51631f9eff718c53342fbaf5ccc400ee0f87d2dc1b2304e4e816
+  sha256: 858e30e075e64ed49a3db5fcacb9d4a70b3f59bd8841b8f6989a62677107a541
 
 build:
   number: 0
   noarch: python
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv"
+  entry_points:
+    - dfpl=dfpl.__main__:main
+  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv && {{ PYTHON }} -m pip install git+https://github.com/soulios/chemprop.git@1d73523e49aa28a90b74edc04aaf45d7e124e338 --no-deps --ignore-installed -vv"
+  run_exports:
+    - {{ pin_subpackage('deepfplearn', max_pin="x") }}
 
 requirements:
   host:
-    - python >=3
+    - python >=3.6
     - pip
   run:
     # - cudatoolkit
     - jsonpickle =2.1
-    - matplotlib-base =3.5
+    - matplotlib-base =3.5.1
     - numpy =1.22
     - pandas =1.4
     - rdkit =2022.03
@@ -30,6 +34,21 @@ requirements:
     - tensorflow-base
     # - tensorflow-gpu =2
     - wandb =0.12
+    - chemprop
+    - seaborn =0.12.2
+    - umap-learn =0.5.3
+
+    # additional chemprop requirements
+    - flask >=1.1.2
+    - hyperopt >=0.2.3
+    - pandas-flavor >=0.2.0
+    - scipy >=1.4.1
+    - sphinx >=3.1.2
+    - tensorboardx >=2.0
+    - pytorch >=1.5.1
+    - tqdm >=4.45.0
+    - typed-argument-parser >=1.6.1
+    - descriptastorus
 
 test:
 #   source_files:
@@ -39,14 +58,14 @@ test:
     - dfpl
   commands:
     - dfpl --help
-    - ls
 # commenting the actual tests due to https://github.com/bioconda/bioconda-utils/issues/897
 #     - dfpl train -f example/train.json
 #     - dfpl predict -f example/predict.json
 
 about:
   home: https://github.com/yigbt/deepFPlearn
-  license: GPL
+  license: GPL-3.0-or-later
+  license_family: GPL
   license_file: LICENSE.pdf
-  summary: Link molecular structures of chemicals (in form of topological fingerprints) with multiple targets.
+  summary: 'Link molecular structures of chemicals (in form of topological fingerprints) with multiple targets.'
 
diff --git a/recipes/deeplc/meta.yaml b/recipes/deeplc/meta.yaml
index bbcc305e23a1c..053b4fee421bc 100644
--- a/recipes/deeplc/meta.yaml
+++ b/recipes/deeplc/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "DeepLC" %}
-{% set version = "2.2.4" %}
-{% set sha256 = "d5795e3b69ecfafbbf796026638c50d3481ffb0be058a0c46c9c11f957c50993" %}
+{% set version = "2.2.27" %}
+{% set sha256 = "611cd06f1a12a543289c4fa0bbb5364bc3dbeeca905464c7c2668f45fa2fa781" %}
 
 package:
   name: {{ name|lower }}
@@ -13,7 +13,9 @@ source:
 build:
   number: 0
   noarch: python
-  script: {{ PYTHON }} -m pip install . -vv
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
+  run_exports:
+    - {{ pin_subpackage("deeplc", max_pin="x") }}
   entry_points:
     - deeplc=deeplc.__main__:main
     - deeplc-gui=deeplc.gui:start_gui
@@ -38,6 +40,7 @@ requirements:
     - deeplcretrainer
     - psm-utils
     - hdf5plugin
+    - pyopenms
 
 test:
   imports:
@@ -47,7 +50,8 @@ about:
   home: "https://compomics.github.io/projects/DeepLC"
   summary: 'DeepLC: Retention time prediction for (modified) peptides using Deep Learning.'
   dev_url: "https://github.com/compomics/DeepLC"
-  license: APACHE
+  license: Apache-2.0
+  license_family: APACHE
   license_file: LICENSE
 
 extra:
diff --git a/recipes/deeplcretrainer/meta.yaml b/recipes/deeplcretrainer/meta.yaml
index d2ec11a87f15d..635792b35745b 100644
--- a/recipes/deeplcretrainer/meta.yaml
+++ b/recipes/deeplcretrainer/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "DeepLCRetrainer" %}
-{% set version = "0.1.19" %}
-{% set sha256 = "48ff2fb813cd1b16ec93b7143549ad0a5ec4a9741b020957e3de33c8532c42c9" %}
+{% set version = "0.2.12" %}
+{% set sha256 = "bd31124518f6b5d1f1ec2f0983c0885b44e235b93134cc61c5eab52e2519bdff" %}
 
 package:
   name: {{ name|lower }}
@@ -12,8 +12,10 @@ source:
 
 build:
   noarch: python
-  script: {{ PYTHON }} -m pip install . -vv
+  script: {{ PYTHON }} -m pip install . -vvv
   number: 0
+  run_exports:
+    - {{ pin_subpackage('deeplcretrainer', max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/deepmei/build.sh b/recipes/deepmei/build.sh
new file mode 100644
index 0000000000000..1b8b9158061ef
--- /dev/null
+++ b/recipes/deepmei/build.sh
@@ -0,0 +1,4 @@
+mkdir -p $PREFIX/bin
+ls $PREFIX/bin/
+cp -r * $PREFIX/bin/
+chmod +x $PREFIX/bin/*
diff --git a/recipes/deepmei/license.txt b/recipes/deepmei/license.txt
new file mode 100644
index 0000000000000..f288702d2fa16
--- /dev/null
+++ b/recipes/deepmei/license.txt
@@ -0,0 +1,674 @@
+                    GNU GENERAL PUBLIC LICENSE
+                       Version 3, 29 June 2007
+
+ Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/>
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
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+parties who would receive the covered work from you, a discriminatory
+patent license (a) in connection with copies of the covered work
+conveyed by you (or copies made from those copies), or (b) primarily
+for and in connection with specific products or compilations that
+contain the covered work, unless you entered into that arrangement,
+or that patent license was granted, prior to 28 March 2007.
+
+  Nothing in this License shall be construed as excluding or limiting
+any implied license or other defenses to infringement that may
+otherwise be available to you under applicable patent law.
+
+  12. No Surrender of Others' Freedom.
+
+  If conditions are imposed on you (whether by court order, agreement or
+otherwise) that contradict the conditions of this License, they do not
+excuse you from the conditions of this License.  If you cannot convey a
+covered work so as to satisfy simultaneously your obligations under this
+License and any other pertinent obligations, then as a consequence you may
+not convey it at all.  For example, if you agree to terms that obligate you
+to collect a royalty for further conveying from those to whom you convey
+the Program, the only way you could satisfy both those terms and this
+License would be to refrain entirely from conveying the Program.
+
+  13. Use with the GNU Affero General Public License.
+
+  Notwithstanding any other provision of this License, you have
+permission to link or combine any covered work with a work licensed
+under version 3 of the GNU Affero General Public License into a single
+combined work, and to convey the resulting work.  The terms of this
+License will continue to apply to the part which is the covered work,
+but the special requirements of the GNU Affero General Public License,
+section 13, concerning interaction through a network will apply to the
+combination as such.
+
+  14. Revised Versions of this License.
+
+  The Free Software Foundation may publish revised and/or new versions of
+the GNU General Public License from time to time.  Such new versions will
+be similar in spirit to the present version, but may differ in detail to
+address new problems or concerns.
+
+  Each version is given a distinguishing version number.  If the
+Program specifies that a certain numbered version of the GNU General
+Public License "or any later version" applies to it, you have the
+option of following the terms and conditions either of that numbered
+version or of any later version published by the Free Software
+Foundation.  If the Program does not specify a version number of the
+GNU General Public License, you may choose any version ever published
+by the Free Software Foundation.
+
+  If the Program specifies that a proxy can decide which future
+versions of the GNU General Public License can be used, that proxy's
+public statement of acceptance of a version permanently authorizes you
+to choose that version for the Program.
+
+  Later license versions may give you additional or different
+permissions.  However, no additional obligations are imposed on any
+author or copyright holder as a result of your choosing to follow a
+later version.
+
+  15. Disclaimer of Warranty.
+
+  THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
+APPLICABLE LAW.  EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
+HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY
+OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO,
+THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
+PURPOSE.  THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM
+IS WITH YOU.  SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF
+ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
+
+  16. Limitation of Liability.
+
+  IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
+WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
+THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY
+GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE
+USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF
+DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
+PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
+EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
+SUCH DAMAGES.
+
+  17. Interpretation of Sections 15 and 16.
+
+  If the disclaimer of warranty and limitation of liability provided
+above cannot be given local legal effect according to their terms,
+reviewing courts shall apply local law that most closely approximates
+an absolute waiver of all civil liability in connection with the
+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
+                     END OF TERMS AND CONDITIONS
+
+            How to Apply These Terms to Your New Programs
+
+  If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
+  To do so, attach the following notices to the program.  It is safest
+to attach them to the start of each source file to most effectively
+state the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+    <one line to give the program's name and a brief idea of what it does.>
+    Copyright (C) <year>  <name of author>
+
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+Also add information on how to contact you by electronic and paper mail.
+
+  If the program does terminal interaction, make it output a short
+notice like this when it starts in an interactive mode:
+
+    <program>  Copyright (C) <year>  <name of author>
+    This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+    This is free software, and you are welcome to redistribute it
+    under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License.  Of course, your program's commands
+might be different; for a GUI interface, you would use an "about box".
+
+  You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+<https://www.gnu.org/licenses/>.
+
+  The GNU General Public License does not permit incorporating your program
+into proprietary programs.  If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library.  If this is what you want to do, use the GNU Lesser General
+Public License instead of this License.  But first, please read
+<https://www.gnu.org/licenses/why-not-lgpl.html>.
diff --git a/recipes/deepmei/meta.yaml b/recipes/deepmei/meta.yaml
new file mode 100644
index 0000000000000..5176e0a8ea618
--- /dev/null
+++ b/recipes/deepmei/meta.yaml
@@ -0,0 +1,35 @@
+package:
+  name: deepmei
+  version: 1.6.24
+
+source:
+  url: https://raw.githubusercontent.com/kanglu123/deepmei/deepmei-v1.6.24/deepmei_update_v1.6.24.2.tar.gz
+  sha256: 9a0fa0905776924969907cd71dfdf47e9e7afa8fc0ca277e30b2bf222efee3fd
+build:
+  noarch: generic
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('deepmei', max_pin="x.x") }}
+   
+requirements:
+  run:
+    # List dependencies here. e.g.:
+    # ... any other dependencies 
+    - bedtools =2.30.0
+    - bwa
+    - pysam =0.17.0
+    - repeatmasker
+    - tensorflow =2.7.0
+    - python >=3.8,<=3.9
+    - perl =5.32.1
+    - samtools
+    
+test:
+  commands:
+    - deepmei
+
+about:
+  home: https://github.com/Kanglu123/deepmei/tree/deepmei-v1.6.24
+  license: GPL-3.0
+  license_file: license.txt
+  summary: A tool to detect mobile elements insertion
diff --git a/recipes/deeptools/meta.yaml b/recipes/deeptools/meta.yaml
index 629db0a23718e..a6e95ba34a6cb 100644
--- a/recipes/deeptools/meta.yaml
+++ b/recipes/deeptools/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "3.5.2" %}
+{% set version = "3.5.5" %}
 
 package:
   name: deeptools
@@ -6,43 +6,91 @@ package:
 
 source:
   url: https://github.com/deeptools/deepTools/archive/refs/tags/{{ version }}.tar.gz
-  sha256: 31b28114c96271c1056e82112d74873267512d58ca6f59e15549c72fa5718554
+  sha256: f6dda39f552624758a9830cd4589ef43e7047284759b103cf833271cfa564dd1
 
 build:
-  number: 1
+  number: 0
   noarch: python
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vvv"
+  run_exports:
+    - {{ pin_subpackage("deeptools", max_pin="x") }}
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  entry_points:
+    - alignmentSieve = deeptools.alignmentSieve:main
+    - bamCompare = deeptools.bamCompare:main
+    - bamCoverage = deeptools.bamCoverage:main
+    - bamPEFragmentSize = deeptools.bamPEFragmentSize:main
+    - bigwigAverage = deeptools.bigwigAverage:main
+    - bigwigCompare = deeptools.bigwigCompare:main
+    - computeGCBias = deeptools.computeGCBias:main
+    - computeMatrix = deeptools.computeMatrix:main
+    - computeMatrixOperations = deeptools.computeMatrixOperations:main
+    - correctGCBias = deeptools.correctGCBias:main
+    - deeptools = deeptools.deeptools_list_tools:main
+    - estimateReadFiltering = deeptools.estimateReadFiltering:main
+    - estimateScaleFactor = deeptools.estimateScaleFactor:main
+    - multiBamSummary = deeptools.multiBamSummary:main
+    - multiBigwigSummary = deeptools.multiBigwigSummary:main
+    - plotCorrelation = deeptools.plotCorrelation:main
+    - plotCoverage = deeptools.plotCoverage:main
+    - plotEnrichment = deeptools.plotEnrichment:main
+    - plotFingerprint = deeptools.plotFingerprint:main
+    - plotHeatmap = deeptools.plotHeatmap:main
+    - plotPCA = deeptools.plotPCA:main
+    - plotProfile = deeptools.plotProfile:main
 
 requirements:
   host:
-    - python >=3
+    - python >=3.8
     - pip
   run:
-    - python >=3
+    - python >=3.8
     - pybigwig >=0.2.3
-    - numpy >=1.9.0,<1.24
+    - numpy >=1.9.0
+    - numpydoc >=0.5
     - scipy >=0.17.0
-    - matplotlib-base >=3.1.0
+    - matplotlib-base >=3.5.0
     - pysam >=0.14.0
     - py2bit >=0.2.0
-    - plotly >=2.0.0
+    - plotly >=4.9
     - deeptoolsintervals >=0.1.8
+    - importlib-metadata
 
 test:
   imports:
     - deeptools
-
   commands:
     - bamCompare --version
 
 about:
   home: https://github.com/deeptools/deepTools
-  license: GPL3
+  license: MIT
+  license_family: MIT
   license_file: LICENSE.txt
   summary: A set of user-friendly tools for normalization and visualzation of deep-sequencing data
+  doc_url: https://deeptools.readthedocs.io/en/latest/
+  dev_url: https://github.com/deeptools/deepTools
 
 extra:
   identifiers:
     - biotools:deeptools
     - doi:10.1093/nar/gkw257
     - usegalaxy-eu:deeptools_plot_heatmap
+    - usegalaxy-eu:deeptools_plot_pca
+    - usegalaxy-eu:deeptools_plot_profile
+    - usegalaxy-eu:deeptools_plot_correlation
+    - usegalaxy-eu:deeptools_plot_coverage
+    - usegalaxy-eu:deeptools_plot_fingerprint
+    - usegalaxy-eu:deeptools_plot_enrichment
+    - usegalaxy-eu:deeptools_bam_compare
+    - usegalaxy-eu:deeptools_bam_pe_fragmentsize
+    - usegalaxy-eu:deeptools_bigwig_compare
+    - usegalaxy-eu:deeptools_correct_gc_bias
+    - usegalaxy-eu:deeptools_multi_bam_summary
+    - usegalaxy-eu:deeptools_compute_matrix
+    - usegalaxy-eu:deeptools_compute_gc_bias
+    - usegalaxy-eu:deeptools_multi_bigwig_summary
+    - usegalaxy-eu:deeptools_compute_matrix_operations
+    - usegalaxy-eu:deeptools_alignmentsieve
+    - usegalaxy-eu:deeptools_estimatereadfiltering
+    - usegalaxy-eu:hicup_deduplicator
+    - usegalaxy-eu:deeptools_bigwig_average
diff --git a/recipes/deeptoolsintervals/meta.yaml b/recipes/deeptoolsintervals/meta.yaml
index 8aac5d66478b9..6611f446819f6 100644
--- a/recipes/deeptoolsintervals/meta.yaml
+++ b/recipes/deeptoolsintervals/meta.yaml
@@ -10,11 +10,13 @@ source:
   sha256: 7d94c36fd2b6f10d8b99e536d2672e8228971f1fc810497d33527bba2c40d4f6
 
 build:
-  number: 5
+  number: 8
+  run_exports:
+    - {{ pin_subpackage("deeptoolsintervals", max_pin="x.x") }}
 
 requirements:
   build:
-    - "{{ compiler('c') }}"
+    - {{ compiler('c') }}
   host:
     - python
     - setuptools
@@ -29,5 +31,9 @@ test:
 
 about:
   home: https://github.com/deeptools/deeptools_intervals
-  license: GPL3
+  license: MIT
   summary: A python module creating/accessing GTF-based interval trees with associated meta-data
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/deepvariant/meta.yaml b/recipes/deepvariant/meta.yaml
index d89ae1cc5fb84..27b668f7cb492 100644
--- a/recipes/deepvariant/meta.yaml
+++ b/recipes/deepvariant/meta.yaml
@@ -19,8 +19,10 @@ source:
   sha256: '{{ sha256 }}'
 
 build:
-  number: 0
+  number: 1
   skip: true  # [osx or not py36]
+  run_exports:
+    - {{ pin_subpackage("deepvariant", max_pin="x") }}
 
 requirements:
   host:
@@ -33,8 +35,9 @@ requirements:
     # - google-cloud-sdk
     # - bazel
   run:
+    # NB: maintainers, check versions with upstream's settings.sh
     - openjdk >=8,<9
-    - python 3.6.*
+    - python 3.8.*
     # TF slim is difficult because there is an existing tf-slim package in conda-forge
     # https://github.com/conda-forge/tf-slim-feedstock
     # which is different than the google one: https://github.com/google-research/tf-slim
@@ -48,14 +51,14 @@ requirements:
     - htslib
     - numpy
     - curl
-    - tensorflow-gpu 2.0.*
-    - tensorflow-estimator 2.0.*
+    - tensorflow-gpu 2.11.*
+    - tensorflow-estimator 2.11.*
     - protobuf
     - contextlib2
     - enum34
     - intervaltree
     - mock
-    - numpy 1.16.*
+    - numpy 1.19.*
     - psutil
     - requests
     - scipy
diff --git a/recipes/defense-finder/meta.yaml b/recipes/defense-finder/meta.yaml
index 4a77b19d99836..80a8fee131a79 100644
--- a/recipes/defense-finder/meta.yaml
+++ b/recipes/defense-finder/meta.yaml
@@ -1,6 +1,5 @@
 {% set name = "defense-finder" %}
-{% set version = "1.0.9" %}
-
+{% set version = "1.2.2" %}
 
 package:
   name: {{ name|lower }}
@@ -8,13 +7,15 @@ package:
 
 source:
   url: https://github.com/mdmparis/defense-finder/archive/v{{ version }}.tar.gz
-  sha256: 980092d0b7384724eff6377a0300c55659736c10ebbdfad1f31f7d40a9e552f1
-  patches: 0001-fix-no-results.patch
+  sha256: e34e59cf1329e26c9cb6e42bb5cb6a7a051e09ca4bf981b9334f73a08d354625
+  # patches: 0001-fix-no-results.patch
 
 build:
-  number: 0
+  number: 1
   noarch: python
-  script: {{ PYTHON }} -m pip install . -vv
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
+  run_exports:
+    - {{ pin_subpackage('defense-finder', max_pin="x") }}
 
 requirements:
   host:
@@ -23,8 +24,12 @@ requirements:
   run:
     - click >=8.0.3
     - colorlog >=6.3.0a1
-    - macsyfinder >=2
+    # macsyfinder pinned based notes at https://github.com/mdmparis/defense-finder/releases/tag/v1.2.2
+    # Please review macsyfinder version in future release
+    - macsyfinder 2.1.1
     - python >=3.7
+    - pyhmmer
+    - pyrodigal
 
 test:
   commands:
@@ -33,5 +38,6 @@ test:
 about:
   home: https://github.com/mdmparis/defense-finder
   summary: 'Defense Finder: allow for a systematic search of all known anti-phage systems.'
-  license: GPL-3.0
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
diff --git a/recipes/degenotate/meta.yaml b/recipes/degenotate/meta.yaml
index a5159217f2db3..df8b230b1460e 100644
--- a/recipes/degenotate/meta.yaml
+++ b/recipes/degenotate/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "degenotate" %}
-{% set version = "1.2.2" %}
-{% set sha256 = "a12275237cd7c37e2f7ec044452b6b74463a893a8a0b483c9edc378cddcac75c" %}
+{% set version = "1.3" %}
+{% set sha256 = "1c12673fd743c24845fec1dd503bf01114faa6b7f4545429e62747e65d323a66" %}
 
 package:
   name: {{ name|lower }}
@@ -13,6 +13,8 @@ source:
 build:
   number: 0
   noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/delly/build.sh b/recipes/delly/build.sh
index 3da9d173f7a55..e70b4a265f219 100644
--- a/recipes/delly/build.sh
+++ b/recipes/delly/build.sh
@@ -1,12 +1,5 @@
 #!/bin/sh
 
 mkdir -p "${PREFIX}/bin"
-if [[ ${target_platform}  == osx-64 ]] ; then
-    make all CXX=$CXX CXXFLAGS="-I${PREFIX}/include -L${PREFIX}/lib"
-    cp src/delly "${PREFIX}/bin"
-else
-    wget "https://github.com/dellytools/delly/releases/download/v${PKG_VERSION}/delly_v${PKG_VERSION}_linux_x86_64bit"
-    mv delly_v${PKG_VERSION}_linux_x86_64bit delly
-    chmod +x delly
-    cp delly "${PREFIX}/bin"
-fi
+make all CXX=$CXX CXXFLAGS="-I${PREFIX}/include -L${PREFIX}/lib"
+cp src/delly "${PREFIX}/bin"
diff --git a/recipes/delly/meta.yaml b/recipes/delly/meta.yaml
index 92b1fd93c3192..1be26ed167cf9 100644
--- a/recipes/delly/meta.yaml
+++ b/recipes/delly/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "1.1.6" %}
-{% set sha256 = "08961e9c81431eb486476fa71eea94941ad24ec1970b71e5a7720623a39bfd2a" %}
+{% set version = "1.2.6" %}
+{% set sha256 = "1a71fcc5f2a55649c2104086f3f7163ed58c5868eaf040a25e45c777b0e1abb7" %}
 
 package:
   name: delly
@@ -10,7 +10,9 @@ source:
   sha256: '{{ sha256 }}'
 
 build:
-  number: 2
+  number: 1
+  run_exports:
+    - {{ pin_subpackage("delly", max_pin="x.x") }}
 
 requirements:
   build:
@@ -38,3 +40,10 @@ about:
   license_family: BSD
   license_file: LICENSE
   summary: Structural variant discovery by integrated paired-end and split-read analysis
+
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - doi:10.1093/bioinformatics/bts378
+    - biotools:Delly2
diff --git a/recipes/demultiplexer/meta.yaml b/recipes/demultiplexer/meta.yaml
index 59db2cdcef7e8..f2630a2192452 100644
--- a/recipes/demultiplexer/meta.yaml
+++ b/recipes/demultiplexer/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "demultiplexer" %}
-{% set version = "1.1.0" %}
+{% set version = "1.2.1" %}
 
 package:
   name: {{ name|lower }}
@@ -7,11 +7,13 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/demultiplexer-{{ version }}.tar.gz
-  sha256: c1f1b81322bc9990178344ea454c46098df1fd60b09135f9ae0aa5ab6866b02e
+  sha256: e57026caf192fa8a6c6a560bd2f93a70553ca9673320e75c272ae21643de7a3b
 
 build:
   entry_points:
     - demultiplexer = demultiplexer.__main__:main
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
   noarch: python
   script: {{ PYTHON }} -m pip install . -vv
   number: 0
@@ -40,7 +42,6 @@ about:
   home: https://github.com/DominikBuchner/demultiplexer
   summary: python tool to demultiplex illumina reads tagged with the leeselab tagging scheme
   license: MIT
-  license_file: LICENSE
 
 extra:
   recipe-maintainers:
diff --git a/recipes/demuxem/meta.yaml b/recipes/demuxem/meta.yaml
index a2160ef5ce27c..59efd8c3de7d9 100644
--- a/recipes/demuxem/meta.yaml
+++ b/recipes/demuxem/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "demuxEM" %}
-{% set version = "0.1.7" %}
+{% set version = "0.1.7.post1" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,29 +7,32 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: "a6d9c7f51cad81328f88c5cc298a38ce7364dc5555876a44f375113225ee1eae"
+  sha256: "f6e6608c37875fb2db6cbd1abe48ce1149b41c7b2b26380cd4d581dca6cac260"
 
 build:
-  number: 1
+  number: 0
   noarch: python
   entry_points:
     - demuxEM = demuxEM.__main__:main
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --use-pep517 -vvv"
+  run_exports:
+    - {{ pin_subpackage('demuxem', max_pin="x.x") }}
 
 requirements:
   host:
-    - python >=3.7
+    - python >=3.8
     - pip
     - setuptools_scm
   run:
-    - python >=3.7
+    - python >=3.8
+    - docopt
     - numpy
     - pandas
     - scipy
     - scikit-learn
     - seaborn
     - pegasusio >=0.2.12
-    - importlib_metadata >=0.7  # [py<38]
+    - importlib_metadata >=0.7  # [py < 38]
 
 test:
   imports:
@@ -41,7 +44,8 @@ test:
 about:
   home: "https://github.com/lilab-bcb/demuxEM"
   doc_url: "https://demuxEM.readthedocs.io"
-  license: BSD
+  license: BSD-3-Clause
+  license_family: BSD
   license_file: LICENSE
   summary: "DemuxEM is the demultiplexing module of Pegasus, which works on cell-hashing and nucleus-hashing genomics data."
 
diff --git a/recipes/dendropy/meta.yaml b/recipes/dendropy/meta.yaml
index 371f83861c012..3cc2f2fb99f9d 100644
--- a/recipes/dendropy/meta.yaml
+++ b/recipes/dendropy/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "dendropy" %}
-{% set version = "4.6.1" %}
-{% set sha256 = "26fcbe1cb5831301e8f1f2e15a0563620f0b8e29e6d409dd6a2a7c957dd64c16" %}
+{% set version = "5.0.0" %}
+{% set sha256 = "b6851e023cbee33b582ea4918427fd0395e77f0aef7e1fecb174e23be5b706ce" %}
 
 package:
   name: {{ name }}
@@ -13,13 +13,21 @@ source:
 build:
   number: 0
   noarch: python
-  script: {{ PYTHON }} -m pip install . -vv
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv
+  entry_points:
+    - sumtrees=dendropy.application.sumtrees:main
+    - sumlabels=dendropy.application.sumlabels:main_cli
+    - dendropy-format=dendropy.application.dendropy_format:main
+    - sumtrees.py=dendropy.application.sumtrees:main
+    - sumlabels.py=dendropy.application.sumlabels:main_cli
+  run_exports:
+    - {{ pin_subpackage('dendropy', max_pin="x") }}
 
 requirements:
   host:
     - python >=3.7
     - pip
-    - setuptools
+    - pytest-runner
   run:
     - python >=3.7
 
@@ -38,7 +46,7 @@ test:
     - dendropy.utility.libexec
 
 about:
-  home: "https://pypi.org/project/DendroPy/"
+  home: "https://github.com/jeetsukumaran/DendroPy"
   summary: 'A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.'
   license: BSD-3-Clause
   license_family: BSD
diff --git a/recipes/dfast/meta.yaml b/recipes/dfast/meta.yaml
index bee44b4572a7a..a057f11094d0d 100644
--- a/recipes/dfast/meta.yaml
+++ b/recipes/dfast/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.2.20" %}
+{% set version = "1.3.0" %}
 
 package:
   name: dfast
@@ -6,11 +6,13 @@ package:
 
 source:
   url: https://github.com/nigyta/dfast_core/archive/{{ version }}.tar.gz
-  sha256: 57f24e8bc20f412b73612ba710e14a009f77381f415f3ee47d69b5c7411ef71d 
+  sha256: 1e420d85f321e2f444bb238370e105e1374cbda6f8f525abc67c0d970c1d8a05 
 
 build:
   number: 0
   binary_relocation: False # [osx]
+  run_exports:
+    - {{ pin_subpackage("dfast", max_pin="x.x") }}
 
 requirements:
   build:
@@ -31,6 +33,7 @@ requirements:
     - ghostx
     - hmmer >=3.1b2
     - metagene_annotator >=1.0
+    - plasmidfinder >=2.1.6
 
 test:
   commands:
diff --git a/recipes/dfast_qc/meta.yaml b/recipes/dfast_qc/meta.yaml
index 09fb751ce759d..b057e76fa7d9d 100644
--- a/recipes/dfast_qc/meta.yaml
+++ b/recipes/dfast_qc/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.5.7" %}
+{% set version = "1.0.0" %}
 
 package:
   name: dfast_qc
@@ -7,23 +7,27 @@ package:
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('dfast_qc', max_pin='x.x') }}
+
 source:
   url: https://github.com/nigyta/dfast_qc/archive/{{ version }}.tar.gz
-  sha256: ca96868ef51ccef6d3082d481afb4ee43018a08f846151aa039acb37942a3347
+  sha256: 456843b81b4f3e221d2ae20cfd64aec8bd74e7f1a772d64eb9942b164f829813
 
-requirements:
 
+requirements:
 
   run:
     - python >=3.8
     - prodigal
-    - blast
-    - fastani ==1.33
     - hmmer
     - checkm-genome ==1.2.2
     - ete3
     - more-itertools
     - peewee
+    - mash
+    - skani
+    - gsl ==2.6
 
 test:
   commands:
diff --git a/recipes/dgenies/meta.yaml b/recipes/dgenies/meta.yaml
index 8030d3a292043..4bc4d0ebcf5b6 100644
--- a/recipes/dgenies/meta.yaml
+++ b/recipes/dgenies/meta.yaml
@@ -10,8 +10,10 @@ source:
   sha256: "74be9d66095a1e3e1dcc70f69c3a61a0d651b16594a85878d83216dfc6979aa5"
 
 build:
-  number: 0
+  number: 1
   noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   host:
@@ -20,7 +22,7 @@ requirements:
   run:
     - python >=3.6
     - biopython >=1.70
-    - flask >=1.0
+    - flask =2
     - intervaltree =3
     - jinja2 >=2.11.3
     - markdown >=2.6
diff --git a/recipes/diamond/meta.yaml b/recipes/diamond/meta.yaml
index 0fe8f5553d59f..d35213fa65257 100644
--- a/recipes/diamond/meta.yaml
+++ b/recipes/diamond/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "2.1.8" %}
-{% set sha256 = "b6088259f2bc92d1f9dc4add44590cff68321bcbf91eefbc295a3525118b9415" %}
+{% set version = "2.1.9" %}
+{% set sha256 = "4cde9df78c63e8aef9df1e3265cd06a93ce1b047d6dba513a1437719b70e9d88" %}
 
 package:
   name: diamond
@@ -11,6 +11,8 @@ source:
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage('diamond', max_pin="x") }}
 
 requirements:
   build:
@@ -32,10 +34,11 @@ test:
 
 about:
   home: https://github.com/bbuchfink/diamond
-  license: GPL-3.0
-  license_family: GPL
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
   summary: Accelerated BLAST compatible local sequence aligner
+  doc_url: https://github.com/bbuchfink/diamond/wiki
 
 extra:
   identifiers:
diff --git a/recipes/dicey/meta.yaml b/recipes/dicey/meta.yaml
index a6821273ca5b9..c5ceeb4d70007 100644
--- a/recipes/dicey/meta.yaml
+++ b/recipes/dicey/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.2.3" %}
-{% set sha256 = "96d3734b3317a039145db5f403205e32f34a865865cf178766c49f506ed2acfb" %}
+{% set version = "0.2.8" %}
+{% set sha256 = "63ca4bc5579023de12a0495fe0989ed3ddf7e0eb06bfde15c7bbaa2894c6844e" %}
 
 package:
   name: dicey
@@ -14,12 +14,9 @@ source:
 
 
 build:
-  number: 2
-
-extra:
-  skip-lints:
-    - uses_vcs_url
-    - missing_hash
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("dicey", max_pin="x.x") }}
 
 requirements:
   build:
@@ -34,6 +31,7 @@ requirements:
   host:
     - zlib
     - bzip2
+    - libdeflate
     - boost-cpp
     - htslib
     - clangdev
@@ -41,6 +39,7 @@ requirements:
   run:
     - zlib
     - bzip2
+    - libdeflate
     - boost-cpp
     - htslib
 
@@ -54,3 +53,10 @@ about:
   license_family: GPL
   license_file: LICENSE
   summary: In-silico PCR and variant primer design
+
+extra:
+  skip-lints:
+    - uses_vcs_url
+    - missing_hash
+  identifiers:
+    - biotools:Gear-Genomics
diff --git a/recipes/difcover/build.sh b/recipes/difcover/build.sh
new file mode 100644
index 0000000000000..0637e60005d17
--- /dev/null
+++ b/recipes/difcover/build.sh
@@ -0,0 +1,10 @@
+#!/bin/bash
+
+cd dif_cover_scripts/
+
+rm from_unionbed_to_ratio_per_window_CC0
+make CXX="${GXX} ${LDFLAGS}"
+
+mkdir -p "${PREFIX}/bin"
+cp from_unionbed_to_ratio_per_window_CC0 *.sh "${PREFIX}/bin"
+chmod +x ${PREFIX}/bin/*.sh
diff --git a/recipes/difcover/meta.yaml b/recipes/difcover/meta.yaml
new file mode 100644
index 0000000000000..db20091a2f2bf
--- /dev/null
+++ b/recipes/difcover/meta.yaml
@@ -0,0 +1,34 @@
+{% set version = "3.0.1" %}
+
+package:
+  name: difcover
+  version: {{ version }}
+
+build:
+  number: 0
+  skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage("difcover", max_pin="x") }}
+
+source:
+  url: https://github.com/timnat/DifCover/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 52f950f35bfcd6c863127bae937da1158dd16da5c1a0e85f523561504d300447
+
+requirements:
+  build:
+    - make
+    - {{ compiler('cxx') }} 
+  run:
+    - samtools
+    - bedtools
+    - bioconductor-dnacopy
+
+about:
+  home: https://github.com/timnat/DifCover
+  license: MIT
+  license_file: LICENSE
+  summary: Pipeline to identify genomic regions with read coverage differences between pairs of samples
+
+test:
+  commands:
+    - 'from_unionbed_to_ratio_per_window_CC0 2>&1 | grep "^Usage"'
diff --git a/recipes/diffacto/meta.yaml b/recipes/diffacto/meta.yaml
index ad0a23a0bd854..30a547e5fe097 100644
--- a/recipes/diffacto/meta.yaml
+++ b/recipes/diffacto/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "diffacto" %}
-{% set version = "1.0.6" %}
+{% set version = "1.0.7" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,14 +7,16 @@ package:
 
 source:
   url: https://github.com/statisticalbiotechnology/diffacto/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: fde7d7f350abc28de0cce23e68d375028a1d3d0969c988a7d07268fe56085f85
+  sha256: 372d46e43509b2d0cbc5499a651ef51f175f24e211219598127f5f3ba13755fe
 
 build:
   noarch: python
   number: 0
   entry_points:
     - diffacto = diffacto.diffacto:main
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('diffacto', max_pin="x") }}
 
 requirements:
   host:
@@ -37,7 +39,8 @@ test:
 
 about:
   home: "https://github.com/statisticalbiotechnology/diffacto"
-  license: "Apache Software"
+  license: "Apache-2.0"
   license_family: "APACHE"
   license_file: "LICENSE.txt"
   summary: "A protein summarization method for shotgun proteomics experiments"
+  dev_url: "https://github.com/statisticalbiotechnology/diffacto"
diff --git a/recipes/digestiflow-demux/meta.yaml b/recipes/digestiflow-demux/meta.yaml
index 61357c47f6f84..7e19645145149 100644
--- a/recipes/digestiflow-demux/meta.yaml
+++ b/recipes/digestiflow-demux/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.5.2" %}
-{% set sha256 = "c82fa65e17e3c4f3cb71f73ddad5eafea8e76ab66468db2fb5afdf661da54213" %}
+{% set version = "0.5.3" %}
+{% set sha256 = "1f92a8d15631c21d7921131f06b1d811fd011b18425c8f3046b7a0c85f8e52d6" %}
 
 package:
   name: digestiflow-demux
@@ -11,10 +11,14 @@ build:
   script: python -m pip install --no-deps --ignore-installed .
   entry_points:
     - digestiflow-demux = digestiflow_demux.__main__:main
+  run_exports:
+    - {{ pin_subpackage("digestiflow-demux", max_pin="x.x") }}
 
 source:
   url: https://github.com/bihealth/digestiflow-demux/archive/v{{ version }}.tar.gz
   sha256: '{{ sha256 }}'
+  patches:
+    - patch
 
 requirements:
   host:
diff --git a/recipes/digestiflow-demux/patch b/recipes/digestiflow-demux/patch
new file mode 100644
index 0000000000000..7753e07d2c8a7
--- /dev/null
+++ b/recipes/digestiflow-demux/patch
@@ -0,0 +1,13 @@
+diff --git a/setup.py b/setup.py
+index 2ea4fc9..110a43c 100644
+--- a/setup.py
++++ b/setup.py
+@@ -58,7 +58,7 @@ setup(
+     url="https://github.com/bihealth/digestiflow-demux",
+     packages=find_packages(),
+     package_dir={"digestiflow_demux": "digestiflow_demux"},
+-    entry_points={"console_scripts": ("digestiflow-demux=digestiflow_demux.__main__:main",),)},
++    entry_points={"console_scripts": ("digestiflow-demux=digestiflow_demux.__main__:main",)},
+     include_package_data=True,
+     install_requires=requirements,
+     license="MIT license",
diff --git a/recipes/dimet/meta.yaml b/recipes/dimet/meta.yaml
index 1eb9309906fd0..3dbed3022c530 100644
--- a/recipes/dimet/meta.yaml
+++ b/recipes/dimet/meta.yaml
@@ -1,51 +1,54 @@
-{% set name = "dimet" %}
-{% set version = "0.1.0" %}
-
-package:
-  name: {{ name|lower }}
-  version: {{ version }}
-
-source:
-  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/dimet-{{ version }}.tar.gz
-  sha256: 8c7b471257d50c1a7123cfcca335ba267383b1b4ee50da0a05a4f0e96eb3af11
-
-build:
-  noarch: python
-  script: {{ PYTHON }} -m pip install . -vv
-  number: 0
-
-requirements:
-  host:
-    - python >=3.9,<4.0
-    - poetry
-    - pip
-  run:
-    - python >=3.9,<4.0
-    - click
-    - coverage
-    - hydra-colorlog >=1.2.0,<1.3.0
-    - hydra-core >=1.3.2,<1.4.0
-    - matplotlib-base >=3.7.1,<3.8.0
-    - numpy >=1.23.1,<1.24.0
-    - pandas >=1.5.3,<1.6.0
-    - pydantic >=1.10.8,<2.0.0
-    - python-dotenv >=1.0,<2.0
-    - pyyaml >=6.0,<7.0
-    - scikit-learn >=1.1.1,<1.2.0
-    - scipy >=1.9.1,<1.10.0
-    - seaborn >=0.11.2,<0.12.0
-    - statsmodels >=0.13.5,<0.14.0
-
-test:
-  imports:
-    - dimet
-about:
-  home: https://github.com/cbib/DIMet.git
-  summary: A tool for Differential Isotope-labeled targeted Metabolomics
-  license: MIT
-  license_file: LICENSE
-
-extra:
-  recipe-maintainers:
-    - hechth
-    - bdartigues
+{% set name = "dimet" %}
+{% set version = "0.2.4" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/dimet-{{ version }}.tar.gz
+  sha256: d394d9a9b1eab5c9cc89f9ac59ff0ee06226b3c6421a6eede001491220fb2642
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv
+  number: 1
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.9,<4.0
+    - poetry
+    - pip
+    - six
+  run:
+    - python >=3.9,<4.0
+    - click
+    - coverage
+    - hydra-colorlog >=1.2.0,<1.3.0
+    - hydra-core >=1.3.2,<1.4.0
+    - matplotlib-base >=3.8.3
+    - numpy >=1.26.4
+    - pandas >=2.2.0
+    - pydantic >=2.6.1
+    - python-dotenv >=1.0,<2.0
+    - pyyaml >=6.0,<7.0
+    - scikit-learn >=1.4.0
+    - scipy >=1.9.1,<1.10.0
+    - seaborn >=0.13.2
+    - statsmodels >=0.13.5,<0.14.0
+
+test:
+  imports:
+    - dimet
+about:
+  home: https://github.com/cbib/DIMet.git
+  summary: A tool for Differential Isotope-labeled targeted Metabolomics data
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - hechth
+    - bdartigues
diff --git a/recipes/dinamo/meta.yaml b/recipes/dinamo/meta.yaml
index 917619344a1c4..78a2ba7d3cfb2 100644
--- a/recipes/dinamo/meta.yaml
+++ b/recipes/dinamo/meta.yaml
@@ -14,7 +14,9 @@ source:
 
 build:
   skip: True # [osx]
-  number: 4
+  number: 5
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x") }}
 
 requirements:
   build:
@@ -37,6 +39,8 @@ about:
   summary: An exact and efficient method for IUPAC motif discovery in DNA sequences
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   recipe-maintainers:
     - simonvh
   identifiers:
diff --git a/recipes/dinopy/meta.yaml b/recipes/dinopy/meta.yaml
index e3ff0b18c9196..53f879bd28e6b 100644
--- a/recipes/dinopy/meta.yaml
+++ b/recipes/dinopy/meta.yaml
@@ -1,14 +1,17 @@
+{% set version = "3.0.0" %}
+
 package:
   name: dinopy
-  version: "2.2.1"
+  version: {{ version }}
 
 source:
-  url: https://files.pythonhosted.org/packages/2f/6c/eb26221f3b28e05ceede15e02a31c6fb3762940d46ac5cd3b1f56951b59a/dinopy-2.2.1.tar.gz
-  sha256: 092323edddf48c9d3082dfaf934f5c3e4011c7e1248503cd352105e6e50bfcf5
+  url: https://files.pythonhosted.org/packages/e3/fd/06182a3e21bd400c172ef973512a070968c039a0f18f41c54c933fcafef9/dinopy-{{ version }}.tar.gz
+  sha256: 9b2238c20c946a7ea34b979fec4dd182f3474958e9a03075dfbbb464e9d84028
 
 build:
-  skip: True # [py27 or py36]
-  number: 5
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("dinopy", max_pin="x") }}
 
 requirements:
   build:
@@ -16,7 +19,7 @@ requirements:
   host:
     - python
     - setuptools
-    - cython >=0.22
+    - cython >=3.0.0
     - numpy =1.21
   run:
     - python
diff --git a/recipes/dmtools/build.sh b/recipes/dmtools/build.sh
new file mode 100644
index 0000000000000..d52244b3f4425
--- /dev/null
+++ b/recipes/dmtools/build.sh
@@ -0,0 +1,24 @@
+#!/bin/bash
+
+export C_INCLUDE_PATH=${PREFIX}/include
+export CPLUS_INCLUDE_PATH=${PREFIX}/include
+export LIBRARY_PATH=${PREFIX}/lib
+export LD_LIBRARY_PATH=${PREFIX}/lib
+
+##echo make CXX=$CXX CPP=$CXX CC=$CC CFLAGS="-g -w -O3 -Wsign-compare -I$BUILD_PREFIX/include"
+make CXX=$CXX CPP=$CXX CC=$CC
+#CFLAGS="-g -w -O3 -Wsign-compare -I$PREFIX/include -L$PREFIX/lib"
+##export CFLAGS="-I$BUILD_PREFIX/include"
+##export LDFLAGS="-L$BUILD_PREFIX/lib"
+##CFLAGS="${CFLAGS} -fcommon"
+##LDFLAGS=""
+##make CXX=$CXX CPP=$CXX CC=$CC LDLIBS="-L$PREFIX/lib -lz -lzstd -ltbb -ltbbmalloc -lpthread" WITH_ZSTD=1
+
+mkdir -p $PREFIX/bin
+cp dmtools $PREFIX/bin
+cp genome2cg $PREFIX/bin
+cp genomebinLen $PREFIX/bin
+cp dmalign $PREFIX/bin
+cp bam2dm $PREFIX/bin
+cp dmDMR $PREFIX/bin
+cp libBinaMeth.so $PREFIX/lib
diff --git a/recipes/libcifpp/conda_build_config.yaml b/recipes/dmtools/conda_build_config.yaml
similarity index 100%
rename from recipes/libcifpp/conda_build_config.yaml
rename to recipes/dmtools/conda_build_config.yaml
diff --git a/recipes/dmtools/meta.yaml b/recipes/dmtools/meta.yaml
new file mode 100644
index 0000000000000..478f477f896f6
--- /dev/null
+++ b/recipes/dmtools/meta.yaml
@@ -0,0 +1,45 @@
+{% set name = "dmtools" %}
+{% set version = "0.2.6" %}
+{% set sha256 = "7492be776a73ed0aea639ec73d78726a37cfa45d6d31baa12dc7ecb7589d41e9" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: {{ version }}
+
+source:
+  url: https://github.com/ZhouQiangwei/dmtools/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('dmtools', max_pin="x.x") }}
+  skip: True # [osx]
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - make
+  host:
+    - curl
+    - zlib
+    - libcurl
+    - htslib
+    - gsl
+  run:
+    - htslib
+    - zlib
+    - gsl
+    - libcurl
+    - perl
+
+test:
+  commands:
+    - dmtools
+
+about:
+  home: 'https://github.com/ZhouQiangwei/dmtools'
+  license: MIT
+  summary: 'BS-seq, WGBS, NOMe-Seq, RRBS data storage and analysis tool dmtools'
+  doc_url: 'https://dmtools-docs.readthedocs.io/en/latest/index.html'
diff --git a/recipes/dna_features_viewer/meta.yaml b/recipes/dna_features_viewer/meta.yaml
index 06ea643d219e5..515615420e7d3 100644
--- a/recipes/dna_features_viewer/meta.yaml
+++ b/recipes/dna_features_viewer/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "dna_features_viewer" %}
-{% set version = "3.1.2" %}
+{% set version = "3.1.3" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: b8b2b7657e2a9f165edd6f68fb679abfa0c2fdeb887cbd04c22b514997f52d12
+  sha256: 7af179ab1b3c0dedd09e9e667cbd0fb804721ecbfc0cb4d0dda8a165437b3919
 
 build:
   number: 0
   noarch: python
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('dna_features_viewer', max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/dnaapler/meta.yaml b/recipes/dnaapler/meta.yaml
index 9d3ae2ee201f1..afdd8db8dc58a 100644
--- a/recipes/dnaapler/meta.yaml
+++ b/recipes/dnaapler/meta.yaml
@@ -1,32 +1,33 @@
 {% set name = "dnaapler" %}
-{% set version = "0.1.0" %}
+{% set version = "0.7.0" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url:    https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 413ab6f0d085e928e22ef292b41248a5753c83f6572e42b97baf02f35d4e4809
-  
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: 1ae921824055e8c4e9f7651ddd4d4011612f863f17cb95b496849de03560304f
+
 build:
   number: 0
   noarch: python
   entry_points:
     - dnaapler = dnaapler:main
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('dnaapler', max_pin='x') }}
 
 requirements:
   host:
     - python >=3.8,<4.0
-    - poetry =1.3
+    - poetry-core >=1.0.0
     - pip
-  
   run:
-    - blast >=2.9
+    - blast >=2.10
     - python >=3.8,<4.0
     - click >=8.0.0
-    - pyrodigal >=2.0.0
+    - pyrodigal >=3.0.0
     - biopython >=1.76
     - loguru >=0.5.3
     - pandas >=1.4.2
@@ -41,8 +42,10 @@ test:
 about:
   home: https://github.com/gbouras13/dnaapler
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary: Reorients assembled microbial sequences
+  doc_url: https://dnaapler.readthedocs.io/en/latest/
 
 extra:
   recipe-maintainers:
diff --git a/recipes/dnaio/meta.yaml b/recipes/dnaio/meta.yaml
index 470f2376b66d2..dc4afde759949 100644
--- a/recipes/dnaio/meta.yaml
+++ b/recipes/dnaio/meta.yaml
@@ -1,17 +1,20 @@
-{% set version = "0.10.0" %}
+{% set version = "1.2.0" %}
 
 package:
   name: dnaio
   version: {{ version }}
 
 source:
-  url: https://files.pythonhosted.org/packages/ed/fc/d46a2dd24b238fbf4592a699b1250399ccb1bb8a516ee9c0fc9f30deae17/dnaio-0.10.0.tar.gz
-  sha256: de51a50948f00b864297d74eddb588fbee5ac229855754e77564d18b24619d18
+  url: https://files.pythonhosted.org/packages/5b/45/fe12f29d76add9e63290535f0397adc761ceea11e84f995d006b1cb911fe/dnaio-1.2.0.tar.gz
+  sha256: d0528c23516fe4e947970bdef33c423f0a30ab3b083bd4f6f049fd66d8cef803
 
 build:
-  number: 3
+  number: 1
   script: "{{ PYTHON }} -m pip install . --no-deps -vv"
-  skip: True  # [py27 or py36]
+  skip: True  # [py27]
+  run_exports:
+    - {{ pin_subpackage('dnaio', max_pin="x") }}
+
 
 requirements:
   build:
@@ -35,5 +38,7 @@ about:
   summary: 'Read and write FASTA and FASTQ files efficiently'
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   recipe-maintainers:
     - marcelm
diff --git a/recipes/dnamarkmaker/LICENSE.txt b/recipes/dnamarkmaker/LICENSE.txt
new file mode 100644
index 0000000000000..e72bfddabc15b
--- /dev/null
+++ b/recipes/dnamarkmaker/LICENSE.txt
@@ -0,0 +1,674 @@
+                    GNU GENERAL PUBLIC LICENSE
+                       Version 3, 29 June 2007
+
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+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
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+then you must either (1) cause the Corresponding Source to be so
+available, or (2) arrange to deprive yourself of the benefit of the
+patent license for this particular work, or (3) arrange, in a manner
+consistent with the requirements of this License, to extend the patent
+license to downstream recipients.  "Knowingly relying" means you have
+actual knowledge that, but for the patent license, your conveying the
+covered work in a country, or your recipient's use of the covered work
+in a country, would infringe one or more identifiable patents in that
+country that you have reason to believe are valid.
+
+  If, pursuant to or in connection with a single transaction or
+arrangement, you convey, or propagate by procuring conveyance of, a
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+receiving the covered work authorizing them to use, propagate, modify
+or convey a specific copy of the covered work, then the patent license
+you grant is automatically extended to all recipients of the covered
+work and works based on it.
+
+  A patent license is "discriminatory" if it does not include within
+the scope of its coverage, prohibits the exercise of, or is
+conditioned on the non-exercise of one or more of the rights that are
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+in the business of distributing software, under which you make payment
+to the third party based on the extent of your activity of conveying
+the work, and under which the third party grants, to any of the
+parties who would receive the covered work from you, a discriminatory
+patent license (a) in connection with copies of the covered work
+conveyed by you (or copies made from those copies), or (b) primarily
+for and in connection with specific products or compilations that
+contain the covered work, unless you entered into that arrangement,
+or that patent license was granted, prior to 28 March 2007.
+
+  Nothing in this License shall be construed as excluding or limiting
+any implied license or other defenses to infringement that may
+otherwise be available to you under applicable patent law.
+
+  12. No Surrender of Others' Freedom.
+
+  If conditions are imposed on you (whether by court order, agreement or
+otherwise) that contradict the conditions of this License, they do not
+excuse you from the conditions of this License.  If you cannot convey a
+covered work so as to satisfy simultaneously your obligations under this
+License and any other pertinent obligations, then as a consequence you may
+not convey it at all.  For example, if you agree to terms that obligate you
+to collect a royalty for further conveying from those to whom you convey
+the Program, the only way you could satisfy both those terms and this
+License would be to refrain entirely from conveying the Program.
+
+  13. Use with the GNU Affero General Public License.
+
+  Notwithstanding any other provision of this License, you have
+permission to link or combine any covered work with a work licensed
+under version 3 of the GNU Affero General Public License into a single
+combined work, and to convey the resulting work.  The terms of this
+License will continue to apply to the part which is the covered work,
+but the special requirements of the GNU Affero General Public License,
+section 13, concerning interaction through a network will apply to the
+combination as such.
+
+  14. Revised Versions of this License.
+
+  The Free Software Foundation may publish revised and/or new versions of
+the GNU General Public License from time to time.  Such new versions will
+be similar in spirit to the present version, but may differ in detail to
+address new problems or concerns.
+
+  Each version is given a distinguishing version number.  If the
+Program specifies that a certain numbered version of the GNU General
+Public License "or any later version" applies to it, you have the
+option of following the terms and conditions either of that numbered
+version or of any later version published by the Free Software
+Foundation.  If the Program does not specify a version number of the
+GNU General Public License, you may choose any version ever published
+by the Free Software Foundation.
+
+  If the Program specifies that a proxy can decide which future
+versions of the GNU General Public License can be used, that proxy's
+public statement of acceptance of a version permanently authorizes you
+to choose that version for the Program.
+
+  Later license versions may give you additional or different
+permissions.  However, no additional obligations are imposed on any
+author or copyright holder as a result of your choosing to follow a
+later version.
+
+  15. Disclaimer of Warranty.
+
+  THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
+APPLICABLE LAW.  EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
+HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY
+OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO,
+THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
+PURPOSE.  THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM
+IS WITH YOU.  SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF
+ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
+
+  16. Limitation of Liability.
+
+  IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
+WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
+THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY
+GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE
+USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF
+DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
+PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
+EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
+SUCH DAMAGES.
+
+  17. Interpretation of Sections 15 and 16.
+
+  If the disclaimer of warranty and limitation of liability provided
+above cannot be given local legal effect according to their terms,
+reviewing courts shall apply local law that most closely approximates
+an absolute waiver of all civil liability in connection with the
+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
+                     END OF TERMS AND CONDITIONS
+
+            How to Apply These Terms to Your New Programs
+
+  If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
+  To do so, attach the following notices to the program.  It is safest
+to attach them to the start of each source file to most effectively
+state the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+    <one line to give the program's name and a brief idea of what it does.>
+    Copyright (C) <year>  <name of author>
+
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+Also add information on how to contact you by electronic and paper mail.
+
+  If the program does terminal interaction, make it output a short
+notice like this when it starts in an interactive mode:
+
+    <program>  Copyright (C) <year>  <name of author>
+    This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+    This is free software, and you are welcome to redistribute it
+    under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License.  Of course, your program's commands
+might be different; for a GUI interface, you would use an "about box".
+
+  You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+<https://www.gnu.org/licenses/>.
+
+  The GNU General Public License does not permit incorporating your program
+into proprietary programs.  If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library.  If this is what you want to do, use the GNU Lesser General
+Public License instead of this License.  But first, please read
+<https://www.gnu.org/licenses/why-not-lgpl.html>.
\ No newline at end of file
diff --git a/recipes/dnamarkmaker/build.sh b/recipes/dnamarkmaker/build.sh
new file mode 100644
index 0000000000000..fc85c5847e1f8
--- /dev/null
+++ b/recipes/dnamarkmaker/build.sh
@@ -0,0 +1,11 @@
+#! /bin/bash
+
+python -m pip install --no-deps --ignore-installed .
+
+c_dir=$(pwd)
+cd $PREFIX/lib/python*/site-packages/dnamarkmaker
+o_dir=$(pwd)
+mkdir dnamarkmaker
+cd ${c_dir}
+cp dnamarkmaker/primer_recipe.txt ${o_dir}/dnamarkmaker
+cp dnamarkmaker/sim_Aa_95.txt ${o_dir}/dnamarkmaker
diff --git a/recipes/dnamarkmaker/meta.yaml b/recipes/dnamarkmaker/meta.yaml
new file mode 100644
index 0000000000000..e37b46f2444fd
--- /dev/null
+++ b/recipes/dnamarkmaker/meta.yaml
@@ -0,0 +1,40 @@
+{% set name = "DNAMarkMaker" %}
+{% set version = "1.0" %}
+{% set sha256 = "34aeef8daaea75d751e5fb4a8c33f59465bf97383071b214aa1a8214d805e00d" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/SegawaTenta/DNAMarkMaker-CUI/releases/download/{{ version }}/DNAMarkMaker-CUI-main.zip
+  sha256: {{ sha256 }}
+
+build:
+  noarch: python
+  number: 0
+
+requirements:
+  build:
+    - python
+    - setuptools
+    - pip
+  run:
+    - python >=3.9.13
+    - samtools >=1.16
+    - primer3-py >=1.1.0
+
+test:
+  commands:
+    - DNAMarkMaker -h
+
+about:
+  home: https://github.com/SegawaTenta/DNAMarkMaker-CUI
+  summary: 'DNAMarkMaker: pipeline to development ARMS and CAPS marker'
+  license: 'GPL-3.0-or-later'
+  license_family: GPL
+  license_file: LICENSE.txt
+
+extra:
+  identifiers:
+    - biotools:dnamarkmaker
diff --git a/recipes/dnarrange/meta.yaml b/recipes/dnarrange/meta.yaml
index e62072dfbf40f..71980172cffb7 100644
--- a/recipes/dnarrange/meta.yaml
+++ b/recipes/dnarrange/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.5.3" %}
+{% set version = "1.6.2" %}
 
 package:
   name: dnarrange
@@ -6,13 +6,14 @@ package:
 
 source:
   url: https://github.com/mcfrith/dnarrange/archive/{{ version }}.tar.gz
-  sha256: 5a1b1b4e3aec6d808fe2811c078af2137eecef7668f9a3dbb0037fe4aebd9b6f
+  sha256: 1f6b82b51160855455cc2c8ce198dffca7bdfe635806a3c0adc0e58669f8dbe3
 
 build:
   number: 0
   noarch: python
   script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
-
+  run_exports:
+    - {{ pin_subpackage("dnarrange", max_pin="x.x") }}
 requirements:
   host:
     - python
diff --git a/recipes/dnmtools/build.sh b/recipes/dnmtools/build.sh
index 9b16c20f01c71..dd8b881bae132 100644
--- a/recipes/dnmtools/build.sh
+++ b/recipes/dnmtools/build.sh
@@ -1,4 +1,5 @@
 #!/bin/bash
+
 ./configure --prefix=$PREFIX
-make
+make CXXFLAGS="-O3 -DNDEBUG -D_LIBCPP_DISABLE_AVAILABILITY"
 make install
diff --git a/recipes/dnmtools/meta.yaml b/recipes/dnmtools/meta.yaml
index 3b5a112f0afd5..ed044213442b9 100644
--- a/recipes/dnmtools/meta.yaml
+++ b/recipes/dnmtools/meta.yaml
@@ -1,15 +1,18 @@
-{% set version = "1.2.1" %}
+{% set version = "1.4.2" %}
 
 package:
   name: dnmtools
   version: {{ version }}
 
 build:
-  number: 1
+  number: 0
+  run_exports:
+    # dnmtools is currently not intended to be stable between minor versions (x.x).
+    - {{ pin_subpackage('dnmtools', max_pin="x.x") }}
 
 source:
   url: https://github.com/smithlabcode/dnmtools/releases/download/v{{ version }}/dnmtools-{{ version }}.tar.gz
-  sha256: 5d100efa0b6d17c0dd652343cd82992ffff3e421dd3fce4fb9e9b897ea1961b8
+  sha256: 0b712d4635a6924f0f230206b999db3d6e3a98b0d330640f3fd5cf4930eaf127
 
 requirements:
   build:
@@ -20,13 +23,11 @@ requirements:
     - llvm-openmp  # [osx]
     - libgomp      # [linux]
   host:
-    - zlib >=1.2.12
-    - htslib >=1.16
-    - gsl >=2.7.1
+    - htslib
+    - gsl
   run:
-    - zlib >=1.2.12
-    - htslib >=1.16
-    - gsl >=2.7.1
+    - htslib
+    - gsl
 
 about:
   home: https://github.com/smithlabcode/dnmtools
diff --git a/recipes/dnoise/meta.yaml b/recipes/dnoise/meta.yaml
new file mode 100644
index 0000000000000..e8aa73687be78
--- /dev/null
+++ b/recipes/dnoise/meta.yaml
@@ -0,0 +1,48 @@
+{% set name = "DnoisE" %}
+{% set version = "1.4.1" %}
+{% set sha256 = "39c728faea03732df906cb90bf541efdb8d7ebf4858c9bf2717fa8a75e9157b1" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/adriantich/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256 : {{ sha256 }}
+
+build:
+  number: 0
+  noarch: python
+  script: "{{ PYTHON }} -m pip install . -vv --no-deps --ignore-installed"
+  run_exports:
+    - {{ pin_subpackage('dnoise', max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.8
+    - setuptools
+    - pip
+  run:
+    - python >=3.8
+    - pandas =2.0
+    - numpy >=1.21
+    - tqdm
+    - python-levenshtein =0.21
+
+about:
+  home: https://github.com/adriantich/DnoisE
+  license: GPL-3.0-only
+  license_family: GPL
+  license_file: LICENSE
+  summary: "Denoise sequence data sets from Illumina using distance corrected according to the entropy of each codon position"
+
+test:
+  imports:
+    - dnoise
+  commands:
+    - dnoise -h
+
+extra:
+  recipe-maintainers:
+    - adriantich
+    - kbseah
diff --git a/recipes/dodge/meta.yaml b/recipes/dodge/meta.yaml
new file mode 100644
index 0000000000000..c346fc0fe1669
--- /dev/null
+++ b/recipes/dodge/meta.yaml
@@ -0,0 +1,36 @@
+{% set version = "1.0.0" %}
+{% set name = "dodge" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/LanLab/{{ name }}/archive/v{{ version }}.tar.gz
+  sha256: 5b95858a6e317f0ecc7f46b369e052bd14734bc316ec38e360f2de3ae2f62116
+
+build:
+  noarch: python
+  number: 0
+  script: {{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv
+  run_exports:
+    - {{ pin_subpackage('dodge', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.8
+    - pip
+  run:
+    - python >=3.8
+    - scikit-learn >=1.0
+    - pandas >=1.3
+
+about:
+  home: https://github.com/LanLab/dodge
+  license: GPL-3.0-or-later
+  license_file: LICENSE
+  summary: Dynamic Outbreak Detection for Genomic Epidemiology. Automated point source bacterial outbreak detection using cumulative long term genomic surveillance.
+
+test:
+  commands:
+    - dodge --help
diff --git a/recipes/dosage_score/LICENSE.txt b/recipes/dosage_score/LICENSE.txt
new file mode 100644
index 0000000000000..e72bfddabc15b
--- /dev/null
+++ b/recipes/dosage_score/LICENSE.txt
@@ -0,0 +1,674 @@
+                    GNU GENERAL PUBLIC LICENSE
+                       Version 3, 29 June 2007
+
+ Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/>
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+                            Preamble
+
+  The GNU General Public License is a free, copyleft license for
+software and other kinds of works.
+
+  The licenses for most software and other practical works are designed
+to take away your freedom to share and change the works.  By contrast,
+the GNU General Public License is intended to guarantee your freedom to
+share and change all versions of a program--to make sure it remains free
+software for all its users.  We, the Free Software Foundation, use the
+GNU General Public License for most of our software; it applies also to
+any other work released this way by its authors.  You can apply it to
+your programs, too.
+
+  When we speak of free software, we are referring to freedom, not
+price.  Our General Public Licenses are designed to make sure that you
+have the freedom to distribute copies of free software (and charge for
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+
+  To protect your rights, we need to prevent others from denying you
+these rights or asking you to surrender the rights.  Therefore, you have
+certain responsibilities if you distribute copies of the software, or if
+you modify it: responsibilities to respect the freedom of others.
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+  Developers that use the GNU GPL protect your rights with two steps:
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+  To "propagate" a work means to do anything with it that, without
+permission, would make you directly or secondarily liable for
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+menu, a prominent item in the list meets this criterion.
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+for making modifications to it.  "Object code" means any non-source
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+  "Additional permissions" are terms that supplement the terms of this
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+  All other non-permissive additional terms are considered "further
+restrictions" within the meaning of section 10.  If the Program as you
+received it, or any part of it, contains a notice stating that it is
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+  Additional terms, permissive or non-permissive, may be stated in the
+form of a separately written license, or stated as exceptions;
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+  You may not propagate or modify a covered work except as expressly
+provided under this License.  Any attempt otherwise to propagate or
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+your receipt of the notice.
+
+  Termination of your rights under this section does not terminate the
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+  9. Acceptance Not Required for Having Copies.
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+
+  10. Automatic Licensing of Downstream Recipients.
+
+  Each time you convey a covered work, the recipient automatically
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+propagate that work, subject to this License.  You are not responsible
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+
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+any patent claim is infringed by making, using, selling, offering for
+sale, or importing the Program or any portion of it.
+
+  11. Patents.
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+  A "contributor" is a copyright holder who authorizes use under this
+License of the Program or a work on which the Program is based.  The
+work thus licensed is called the contributor's "contributor version".
+
+  A contributor's "essential patent claims" are all patent claims
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+patent sublicenses in a manner consistent with the requirements of
+this License.
+
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+patent license under the contributor's essential patent claims, to
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+  In the following three paragraphs, a "patent license" is any express
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+available, or (2) arrange to deprive yourself of the benefit of the
+patent license for this particular work, or (3) arrange, in a manner
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+license to downstream recipients.  "Knowingly relying" means you have
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+  A patent license is "discriminatory" if it does not include within
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+or that patent license was granted, prior to 28 March 2007.
+
+  Nothing in this License shall be construed as excluding or limiting
+any implied license or other defenses to infringement that may
+otherwise be available to you under applicable patent law.
+
+  12. No Surrender of Others' Freedom.
+
+  If conditions are imposed on you (whether by court order, agreement or
+otherwise) that contradict the conditions of this License, they do not
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+to collect a royalty for further conveying from those to whom you convey
+the Program, the only way you could satisfy both those terms and this
+License would be to refrain entirely from conveying the Program.
+
+  13. Use with the GNU Affero General Public License.
+
+  Notwithstanding any other provision of this License, you have
+permission to link or combine any covered work with a work licensed
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+combination as such.
+
+  14. Revised Versions of this License.
+
+  The Free Software Foundation may publish revised and/or new versions of
+the GNU General Public License from time to time.  Such new versions will
+be similar in spirit to the present version, but may differ in detail to
+address new problems or concerns.
+
+  Each version is given a distinguishing version number.  If the
+Program specifies that a certain numbered version of the GNU General
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+Foundation.  If the Program does not specify a version number of the
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+by the Free Software Foundation.
+
+  If the Program specifies that a proxy can decide which future
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+to choose that version for the Program.
+
+  Later license versions may give you additional or different
+permissions.  However, no additional obligations are imposed on any
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+later version.
+
+  15. Disclaimer of Warranty.
+
+  THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
+APPLICABLE LAW.  EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
+HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY
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+ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
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+  16. Limitation of Liability.
+
+  IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
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+PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
+EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
+SUCH DAMAGES.
+
+  17. Interpretation of Sections 15 and 16.
+
+  If the disclaimer of warranty and limitation of liability provided
+above cannot be given local legal effect according to their terms,
+reviewing courts shall apply local law that most closely approximates
+an absolute waiver of all civil liability in connection with the
+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
+                     END OF TERMS AND CONDITIONS
+
+            How to Apply These Terms to Your New Programs
+
+  If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
+  To do so, attach the following notices to the program.  It is safest
+to attach them to the start of each source file to most effectively
+state the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+    <one line to give the program's name and a brief idea of what it does.>
+    Copyright (C) <year>  <name of author>
+
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+Also add information on how to contact you by electronic and paper mail.
+
+  If the program does terminal interaction, make it output a short
+notice like this when it starts in an interactive mode:
+
+    <program>  Copyright (C) <year>  <name of author>
+    This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+    This is free software, and you are welcome to redistribute it
+    under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License.  Of course, your program's commands
+might be different; for a GUI interface, you would use an "about box".
+
+  You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+<https://www.gnu.org/licenses/>.
+
+  The GNU General Public License does not permit incorporating your program
+into proprietary programs.  If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library.  If this is what you want to do, use the GNU Lesser General
+Public License instead of this License.  But first, please read
+<https://www.gnu.org/licenses/why-not-lgpl.html>.
\ No newline at end of file
diff --git a/recipes/dosage_score/meta.yaml b/recipes/dosage_score/meta.yaml
new file mode 100644
index 0000000000000..99f5fbb7b1edc
--- /dev/null
+++ b/recipes/dosage_score/meta.yaml
@@ -0,0 +1,46 @@
+{% set name = "dosage_score" %}
+{% set version = "1.0.0" %}
+{% set sha256 = "4d5761a1b0284bba5c0291359b24e7abf9a7e729b06917c324bf846d59b4306c" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/SegawaTenta/Dosage-score/releases/download/v{{ version }}/Dosage-score-main.zip
+  sha256: {{ sha256 }}
+
+build:
+  script: python -m pip install --no-deps --ignore-installed .
+  noarch: python
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('dosage_score', max_pin="x") }}
+
+requirements:
+  build:
+    - python >=3.7
+    - setuptools
+    - pip
+  run:
+    - python >=3.7
+    - pandas =1.5.0 
+    - samtools >=1.16
+    - matplotlib-base
+    - numpy
+
+test:
+  commands:
+    - dosage_score -h
+    - dosage_score_plot -h
+
+about:
+  home: https://github.com/SegawaTenta/Dosage-score
+  summary: 'Dosage-score: pipline to estimate dosage of each genomic region'
+  license: 'GPL-3.0-or-later'
+  license_family: GPL
+  license_file: LICENSE.txt
+
+extra:
+  identifiers:
+    - biotools:dosage_score
diff --git a/recipes/dr-disco/meta.yaml b/recipes/dr-disco/meta.yaml
index ac393eea008ac..084c747d3e42b 100644
--- a/recipes/dr-disco/meta.yaml
+++ b/recipes/dr-disco/meta.yaml
@@ -1,7 +1,5 @@
-{% set version = "0.18.0" %}
-{% set sha256 = "ca4efb7a07d6a51f6218d5d160d61986b6ed23967c0609f4ea73e882a6d4b6c6" %}
-
-
+{% set version = "0.18.3" %}
+{% set sha256 = "056a7fb5715a5112d04e07385a5c665a4d2dc1574221427972fd3168c3dea348" %}
 
 package:
   name: dr-disco
@@ -14,20 +12,22 @@ source:
 build:
   noarch: python
   number: 0
+  run_exports:
+    - {{ pin_subpackage("dr-disco", max_pin="x.x") }}
   script: python -m pip install --no-deps --ignore-installed .
 
 requirements:
   host:
-    - python <3
+    - python
     - pip
     - numpy
     - scipy
   run:
-    - python <3
+    - python
+    - numpy
     - scipy
     - pysam
     - click
-    - fuma
     - HTSeq
     - pyfaidx
     - tqdm
diff --git a/recipes/dragonflye/meta.yaml b/recipes/dragonflye/meta.yaml
index 6df5e41a4a32b..7ed965198a477 100644
--- a/recipes/dragonflye/meta.yaml
+++ b/recipes/dragonflye/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "dragonflye" %}
-{% set version = "1.1.1" %}
+{% set version = "1.2.1" %}
 
 package:
   name: {{ name }}
@@ -8,35 +8,38 @@ package:
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 source:
   url: https://github.com/rpetit3/{{ name }}/archive/v{{ version }}.tar.gz
-  sha256: bd2e5710d90e5472d5086c8bbff0f2ab77212d697ffd5de9361bfe07cb39fb4d
+  sha256: 3a0499a5c9aeb1b9246d5eb9512c01fe07b6c87f80bc97b11d3b672e60eb51f9
 
 requirements:
   run:
-    - assembly-scan >=0.4.0
+    - assembly-scan >=1.0.0
     - any2fasta >=0.4.2
     - bwa
+    - dnaapler
     - fastp
     - flye >=2.9.2
     - kmc >=3.1
-    - medaka >=1.8.0
+    - medaka >=1.11.0
     - miniasm >=0.3_r179
-    - nanoq >=0.8.1
+    - nanoq >=0.10.0
     - perl >=5.26
     - perl-file-spec
     - perl-findbin
     - pigz >=2.6
     - pilon
-    - polypolish
+    - polypolish >=0.6.0
     - porechop
-    - racon >=1.4.20
-    - rasusa >=0.6
-    - raven-assembler >=1.6.1
+    - racon >=1.5.0
+    - rasusa >=1.0.0
+    - raven-assembler >=1.8.3
     - samclip
     - samtools
-    - seqtk >=1.3
+    - seqtk >=1.4
 
 test:
   commands:
diff --git a/recipes/dram/fix_setup.patch b/recipes/dram/fix_setup.patch
new file mode 100644
index 0000000000000..f8fb0fcc6f255
--- /dev/null
+++ b/recipes/dram/fix_setup.patch
@@ -0,0 +1,14 @@
+--- scripts/DRAM-setup.py.old	2024-03-24 22:09:07.980198244 -0500
++++ scripts/DRAM-setup.py	2024-03-24 22:10:39.107097364 -0500
+@@ -121,10 +121,10 @@
+                                     help='vog annotations file') # add loc to vog_annotations to match the rest
+ 
+     set_db_locs_parser.add_argument('--viral_loc', default=None,
++                                    help='mmseqs2 database file from ref seq viral gene collection')
+     set_db_locs_parser.add_argument('--camper_tar_gz_loc', default=None,
+                                     help='The source for the CAMPER database files, this is a tar.gz file downloaded'
+                                     ' from the release page https://github.com/WrightonLabCSU/CAMPER/releases')
+-                                    help='mmseqs2 database file from ref seq viral gene collection')
+     set_db_locs_parser.add_argument('--peptidase_loc', default=None,
+                                     help='mmseqs2 database file from MEROPS database')
+     set_db_locs_parser.add_argument('--description_db_loc', default=None,
diff --git a/recipes/dram/meta.yaml b/recipes/dram/meta.yaml
index 6c93600ad8052..71f440a076c1b 100644
--- a/recipes/dram/meta.yaml
+++ b/recipes/dram/meta.yaml
@@ -1,7 +1,7 @@
 {% set name = "DRAM" %}
 {% set pypi_name = "DRAM-bio" %}
-{% set version = "1.4.6" %}
-{% set sha256 = "f014c55d7e75433bfc029dc20092df6eb9fb5a565dc60d6e7934d0261f36f945" %}
+{% set version = "1.5.0" %}
+{% set sha256 = "2d4a503fa806e33b580afb6d21879b2399178e48ba3b05ada882449fee571889" %}
 
 package:
   name: {{ name|lower }}
@@ -10,15 +10,20 @@ package:
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ pypi_name }}/{{ pypi_name }}-{{ version }}.tar.gz
   sha256: {{ sha256 }}
+  patches:
+    # https://github.com/WrightonLabCSU/DRAM/issues/339
+    - fix_setup.patch
 
 build:
-  number: 2
+  number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x") }}
 
 requirements:
   host:
-    - python >=3.6
+    - python >=3.8
     - pip
   run:
     - python >=3.8
diff --git a/recipes/drep/meta.yaml b/recipes/drep/meta.yaml
index e0c77947bb43b..b85c516641122 100644
--- a/recipes/drep/meta.yaml
+++ b/recipes/drep/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "drep" %}
-{% set version = "3.4.3" %}
+{% set version = "3.5.0" %}
 
 package:
   name: drep
@@ -7,12 +7,14 @@ package:
 
 source:
   url: https://pypi.io/packages/source/d/drep/drep-{{ version }}.tar.gz
-  sha256: ba0a8aaa8b717183c9ea06a8aa11f5b96c3cf79a2d3658cb284b77d3e7d56f8c
+  sha256: 4bd2fe9021fdcbcdf646ef5c558d4ea5d9440b290c0a42454037008997a9cfc6
 
 build:
   number: 0
   noarch: python
-  script: $PYTHON -m pip install --no-deps --ignore-installed --no-cache-dir -vvv .
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation --no-cache-dir -vvv .
+  run_exports:
+    - {{ pin_subpackage('drep', max_pin="x") }}
 
 requirements:
   host:
@@ -20,21 +22,22 @@ requirements:
     - pip
   run:
     - python >3
+    - tqdm
     - numpy
     - pandas
     - seaborn
     - matplotlib-base
-    - biopython
     - scikit-learn
     - mummer4
     - mash
     - prodigal
     - fastani
+    - checkm-genome
+    - skani
 
 test:
   imports:
     - drep
-
   commands:
     - dRep -h
 
@@ -43,3 +46,5 @@ about:
   license: MIT
   license_family: MIT
   summary: De-replication of microbial genomes assembled from multiple samples
+  doc_url: https://drep.readthedocs.io/en/latest/
+  dev_url: https://github.com/MrOlm/drep
diff --git a/recipes/drop/meta.yaml b/recipes/drop/meta.yaml
index 10289a06f3354..baf5993f221c9 100644
--- a/recipes/drop/meta.yaml
+++ b/recipes/drop/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "drop" %}
-{% set version = "1.3.3" %} 
+{% set version = "1.3.4" %} 
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: https://github.com/gagneurlab/{{ name }}/archive/{{ version }}.tar.gz
-  sha256: 846d39e3e6f61e4dcc65c9e205040cb49b43b8a4790189dc225e027a9bf00917
+  sha256: 6318f52531f04cd16e59a1b7f90f7ed93d36722f3ea8e18a026b9e17e73462f0
 
 build:
   number: 0
@@ -15,6 +15,8 @@ build:
   entry_points:
     - drop=drop.cli:main
   script: "{{ PYTHON }} -m pip install . -vv --no-deps --ignore-installed"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
 
 requirements:
   host:
@@ -27,8 +29,8 @@ requirements:
     - click-log
     - python-dateutil
     # snakemake/wbuild
+    - wbuild ==1.8=pyhdfd78af_2
     - snakemake-minimal >=5.5.2
-    - wbuild >=1.8
     - pandoc
     - graphviz
     # command line tools
@@ -55,8 +57,8 @@ requirements:
     # bioconductor packages
     - bioconductor-deseq2
     - bioconductor-genomicscores
-    - bioconductor-outrider >=1.6.1
-    - bioconductor-fraser >=1.10.0
+    - bioconductor-outrider ==1.20.1
+    - bioconductor-fraser ==1.99.3
     - bioconductor-variantannotation
     
 test:
diff --git a/recipes/dropkick/meta.yaml b/recipes/dropkick/meta.yaml
new file mode 100644
index 0000000000000..8454489e5b6ba
--- /dev/null
+++ b/recipes/dropkick/meta.yaml
@@ -0,0 +1,51 @@
+{% set name = "dropkick" %}
+{% set version = "1.2.8" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/dropkick-{{ version }}.tar.gz
+  sha256: 4bfbd23984ac11669691818f29e1f0033e32dd7c2236b16d8a2f20fe60c923c6
+
+build:
+  number: 0
+  # "Failed to find libgfortran.3.dylib" build error on OSX
+  skip: True  # [py < 36 or osx]
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  entry_points:
+    - dropkick = dropkick.__main__:main
+  run_exports:
+    - {{ pin_subpackage('dropkick', max_pin="x") }}
+
+requirements:
+  build:
+    - {{ compiler('fortran') }}
+    - {{ compiler('c') }}
+  host:
+    - python
+    - pip
+    - numpy
+  run:
+    - python
+    - scipy >=0.14.1
+    - pandas
+    - scikit-learn >=0.18.0
+    - scikit-image
+    - matplotlib-base >=3.0.3
+    - scanpy
+    - {{ pin_compatible('numpy') }}
+
+test:
+  imports:
+    - dropkick
+  commands:
+    - dropkick --help
+
+about:
+  home: https://github.com/KenLauLab/dropkick
+  summary: Automated scRNA-seq filtering
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
diff --git a/recipes/dsh-bio/meta.yaml b/recipes/dsh-bio/meta.yaml
index 5325ff8a0ffaf..55986f880da06 100644
--- a/recipes/dsh-bio/meta.yaml
+++ b/recipes/dsh-bio/meta.yaml
@@ -1,4 +1,4 @@
-{% set version="2.2.1" %}
+{% set version="2.3" %}
 
 package:
   name: dsh-bio
@@ -6,15 +6,17 @@ package:
 
 source:
   url: https://search.maven.org/remotecontent?filepath=org/dishevelled/dsh-bio-tools/{{ version }}/dsh-bio-tools-{{ version }}-bin.tar.gz
-  sha256: c72d593252eeda237fdb17a1ff515e28361a4ee8ba49a3e377d290e4fa64a6f9
+  sha256: 3255ae93cf7ac05ea8c64f1d6301b9bf745094c82f9db2a6345319a6cca2fafd
 
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('dsh-bio', max_pin="2") }}
 
 requirements:
   run:
-    - openjdk >=11
+    - openjdk >=17
     - zlib
 
 test:
diff --git a/recipes/dudes/meta.yaml b/recipes/dudes/meta.yaml
index af2174caed477..31bf5937c52ae 100644
--- a/recipes/dudes/meta.yaml
+++ b/recipes/dudes/meta.yaml
@@ -1,30 +1,47 @@
+{% set name = "dudes" %}
+{% set version = "0.10.0" %}
+
 package:
-  name: dudes
-  version: "0.08"
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
 
 source:
-  url: https://github.com/pirovc/dudes/archive/dudes_v0.08.tar.gz
-  md5: b569094e73ad2d40dccac7a26554a839
+  url: https://github.com/pirovc/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: cb53be14da0c9d40e4ac758a6de7fe98e494c5bff3847d5aa6568a1ea8781180
 
 build:
   noarch: python
-  number: 2
-  script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
+  number: 0
+  script: {{ PYTHON }} -m pip install --no-deps --ignore-installed --no-cache-dir -vvv .
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   host:
-    - python >=3
+    - python >=3.10
     - pip
+    - poetry
   run:
-    - python >=3
-    - numpy
-    - pandas
+    - python >=3.10
+    - matplotlib-base >=3.5.1
+    - numpy >=1.21.0
+    - pandas >=1.4.1
 
 test:
   commands:
-    - DUDes.py -h 2>&1 | echo $?
+    - dudes -h
+    - dudesdb -h
 
 about:
-  home: https://github.com/pirovc/dudes/
-  license: The MIT License (MIT)
-  summary: 'DUDes: a top-down taxonomic profiler for metagenomics'
+  home: https://github.com/pirovc/dudes
+  summary: "DUDes: a top-down taxonomic profiler for metagenomics and metaproteomics" 
+  license: MIT License
+  license_family: MIT
+  license_file: LICENSE.md
+
+extra:
+  identifiers:
+    - doi:10.1093/bioinformatics/btw150
+  recipe-maintainers:
+    - pirovc
+    - rababerladuseladim
diff --git a/recipes/dunovo/build.sh b/recipes/dunovo/build.sh
index 84dd506c83b71..03143d088095e 100644
--- a/recipes/dunovo/build.sh
+++ b/recipes/dunovo/build.sh
@@ -2,9 +2,9 @@ SubModules="bfx kalign utillib ET"
 
 # Compile binaries and move them to lib.
 if [ "x$CC" = x ]; then
-  make
+  make -j ${CPU_COUNT}
 else
-  make "CC=$CC"
+  make "CC=$CC" -j ${CPU_COUNT}
 fi
 mkdir -p "$PREFIX/lib"
 mv *.so "$PREFIX/lib"
diff --git a/recipes/dunovo/meta.yaml b/recipes/dunovo/meta.yaml
index 011793092556f..9a4f0613ebc73 100644
--- a/recipes/dunovo/meta.yaml
+++ b/recipes/dunovo/meta.yaml
@@ -10,8 +10,10 @@ source:
   sha256: 79f6469bdf6752c3a2555feefc26038ae793dac4acb0136355287aed6cb791e0
 
 build:
-  number: 2
+  number: 3
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage('dunovo', max_pin="x") }}
 
 requirements:
   build:
@@ -25,15 +27,16 @@ requirements:
     #- tbb 2018.0.3
     - python >=3.6
     - bash >=4.0.0
-    - mafft 7.221
+    - mafft >=7.221
     - bowtie >=1.3.0
     - networkx 2.4
     - biopython 1.78
-    - samtools 1.9
+    - samtools
     - gawk
     - gzip
     - file
     - coreutils
+    - numpy <1.24
 
 test:
   commands:
@@ -54,5 +57,7 @@ about:
   summary: "Du Novo: A pipeline for processing duplex sequencing data."
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   skip-lints:
     - should_use_compilers
diff --git a/recipes/dupsifter/build.sh b/recipes/dupsifter/build.sh
new file mode 100644
index 0000000000000..c34018d532433
--- /dev/null
+++ b/recipes/dupsifter/build.sh
@@ -0,0 +1,7 @@
+#!/bin/bash
+
+BIN=${PREFIX}/bin
+mkdir -p ${BIN}
+
+make CC="$CC $LDFLAGS" CFLAGS="$CFLAGS"
+cp dupsifter ${BIN}
diff --git a/recipes/dupsifter/meta.yaml b/recipes/dupsifter/meta.yaml
new file mode 100644
index 0000000000000..2d91cf55de8e3
--- /dev/null
+++ b/recipes/dupsifter/meta.yaml
@@ -0,0 +1,46 @@
+{% set version = '1.2.1.20240119' %}
+
+package:
+  name: dupsifter
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('dupsifter', max_pin='x') }}
+
+source:
+  url: https://github.com/huishenlab/dupsifter/releases/download/v{{ version }}/release-source.zip
+  sha256: ca3db67e36f9a3d054acf9fbaf0dee1037781d468d7f094ea5d3852610448e7a
+  patches:
+    - patch
+
+requirements:
+  build:
+    - make
+    - {{ compiler('c') }}
+  host:
+    - libcurl
+    - bzip2
+    - xz
+    - zlib
+    - libdeflate
+    - openssl # [not osx]
+    - pthread-stubs
+  run:
+    - libcurl
+    - bzip2
+    - xz
+    - zlib
+    - libdeflate
+    - openssl # [not osx]
+    - pthread-stubs
+
+test:
+  commands:
+    - dupsifter --help 2>&1 | grep dupsifter
+
+about:
+  home: https://github.com/huishenlab/dupsifter
+  license: MIT
+  summary: A tool for PCR duplicate marking of WGBS (and WGS) data
diff --git a/recipes/dupsifter/patch b/recipes/dupsifter/patch
new file mode 100644
index 0000000000000..aba337a5e6d8b
--- /dev/null
+++ b/recipes/dupsifter/patch
@@ -0,0 +1,27 @@
+diff --git a/Makefile b/Makefile
+index f786e73..32df980 100644
+--- a/Makefile
++++ b/Makefile
+@@ -1,6 +1,6 @@
+-CC = gcc
+-CFLAGS = -W -Wall -finline-functions -fPIC -std=gnu99 -Wno-unused-result -O3
+-CLIB = -lz -lm -llzma -lbz2 -lcurl
++CC ?= gcc
++CFLAGS ?= -W -Wall -finline-functions -fPIC -std=gnu99 -Wno-unused-result -O3
++CLIB = -lz -lm -llzma -lbz2 -lcurl -lpthread
+ CF_OPTIMIZE = 1
+ 
+ OS := $(shell uname)
+diff --git a/htslib-1.15.1/Makefile b/htslib-1.15.1/Makefile
+index 0871580..e7a313d 100644
+--- a/htslib-1.15.1/Makefile
++++ b/htslib-1.15.1/Makefile
+@@ -22,7 +22,7 @@
+ # FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
+ # DEALINGS IN THE SOFTWARE.
+ 
+-CC     = gcc
++CC     ?= gcc
+ AR     = ar
+ RANLIB = ranlib
+ 
diff --git a/recipes/dwgsim/meta.yaml b/recipes/dwgsim/meta.yaml
index ddd3ac58bbc9f..5f0f3b94548a8 100644
--- a/recipes/dwgsim/meta.yaml
+++ b/recipes/dwgsim/meta.yaml
@@ -1,16 +1,21 @@
+{% set name = "dwgsim" %}
+{% set version = "1.1.14" %}
+
 package:
-  name: dwgsim
-  version: '1.1.13'
+  name: {{ name }}
+  version: {{ version }}
 
 source:
-  - url: https://github.com/nh13/DWGSIM/archive/dwgsim.0.1.13.tar.gz
-    sha256: 445be90283203d9603386c4359e29d6beb1705e418791fbfb5a5d1ee1e3baeb0
+  - url: https://github.com/nh13/DWGSIM/archive/{{ name }}.0.1.14.tar.gz
+    sha256: a974a253bf6bcd5a2162f9ebc6c78c56a29c541850f375a45ddb2b649574ce1b
   - url: http://github.com/samtools/samtools/archive/28391e5898804ce6b805016.tar.gz
     sha256: b17bc6564eef101aeefc2d572347f7141bdb8eb5cdaa81725fdd768cf80d1a2b
     folder: samtools
 
 build:
-  number: 3
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   build:
@@ -30,5 +35,11 @@ test:
 about:
   home: https://github.com/nh13/DWGSIM
   license: GNU General Public License v2 (GPLv2)
+  license_file: LICENSE
   license_family: GPL
   summary: 'Whole Genome Simulator for Next-Generation Sequencing'
+
+extra:
+  recipe-maintainers:
+    - notestaff
+    - nh13
diff --git a/recipes/dxpy/meta.yaml b/recipes/dxpy/meta.yaml
index 4f4a586ef9408..8c83468d75ea6 100644
--- a/recipes/dxpy/meta.yaml
+++ b/recipes/dxpy/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "dxpy" %}
-{% set version = "0.353.1" %}
+{% set version = "0.376.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: ec52574140f8d3a9f75b2a3c5e834c97639abd4ede3211e8c7e8b4016faa9ab4
+  sha256: fe52b647f908c132c4dffe599f9dcb9fb38cac3d6e5f1602eae6878d2b805d59
 
 build:
   number: 0
@@ -17,7 +17,9 @@ build:
     - dx-build-app = dxpy.scripts.dx_build_app:main
     - dx = dxpy.scripts.dx:main
     - dx-app-wizard = dxpy.scripts.dx_app_wizard:main
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('dxpy', max_pin="x.x") }}
 
 requirements:
   host:
@@ -25,12 +27,14 @@ requirements:
     - pip
   run:
     - argcomplete >=1.9.4
+    - certifi
     - cryptography >=3.4.2,<37
     - psutil >=3.3.0
     - python
     - python-dateutil >=2.5
     - requests >=2.8.0,<2.27.1
-    - websocket-client ==0.53.0
+    - urllib3 >=1.25,<2.2
+    - websocket-client ==0.54.0
     - pandas >=1.3.5
 
 test:
diff --git a/recipes/dysgu/meta.yaml b/recipes/dysgu/meta.yaml
index d4e9063fa46ac..2837afb3d0291 100644
--- a/recipes/dysgu/meta.yaml
+++ b/recipes/dysgu/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "dysgu" %}
-{% set version = "1.5.0" %}
-{% set sha256hash = "e2b477c73f7d76cc4fec8d3f2a09ae88e113eab8405fced3c1af905b5f3dca9e" %}
+{% set version = "1.6.2" %}
+{% set sha256hash = "6db67f3abd45ca60f768adc9e154a879e604496909e9d243efd55513d6009910" %}
 
 package:
   name: {{ name|lower }}
@@ -11,10 +11,12 @@ source:
   sha256: {{ sha256hash }}
 
 build:
-  number: 1
+  number: 0
   binary_relocation: False
   entry_points:
     - dysgu = dysgu.main:cli
+  run_exports:
+    - {{ pin_subpackage('dysgu', max_pin="x") }}
 
 requirements:
   build:
@@ -22,31 +24,31 @@ requirements:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
   host:
-    - python >=3.8
+    - python >=3.7
     - setuptools >=63.0
     - cython
     - htslib >=1.12
     - numpy >=1.18
     - lightgbm
     - zlib
-    - pysam
+    - pysam >=0.19
     - libcurl
     - openssl
     - bzip2
     - xz
     - wheel
-    - scipy
-    - pandas
+    - scipy >=1.7
+    - pandas >=1.2
     - networkx >=2.4
     - scikit-learn >=0.22
     - python-edlib
     - sortedcontainers
     - click >=8.0
   run:
-    - python >=3.8
+    - python >=3.7
     - numpy >=1.18
-    - scipy
-    - pandas
+    - scipy >1.7
+    - pandas >=1.2
     - networkx >=2.4
     - scikit-learn >=0.22
     - python-edlib
@@ -54,7 +56,7 @@ requirements:
     - lightgbm
     - zlib
     - click >=8.0
-    - pysam
+    - pysam >=0.19
     - libcurl
     - openssl
     - bzip2
diff --git a/recipes/earlgrey/build.sh b/recipes/earlgrey/build.sh
new file mode 100644
index 0000000000000..217c504636210
--- /dev/null
+++ b/recipes/earlgrey/build.sh
@@ -0,0 +1,78 @@
+#!/bin/bash
+#Based on https://github.com/TobyBaril/EarlGrey/blob/main/configure
+set -x
+
+# Define paths
+PACKAGE_HOME=${PREFIX}/share/${PKG_NAME}-${PKG_VERSION}-${PKG_BUILDNUM}
+SCRIPT_DIR="${PACKAGE_HOME}/scripts/"
+
+
+# Create directories
+mkdir -p ${PREFIX}/bin
+mkdir -p ${PACKAGE_HOME}
+
+
+# Put package in share directory
+cp -rf * ${PACKAGE_HOME}/
+
+
+# Install SA-SSR (has to be done here because SA-SSR is an ancient repository without releases)
+git clone --depth 1 https://github.com/ridgelab/SA-SSR
+cd SA-SSR
+make -j${CPU_COUNT}
+cp -f bin/sa-ssr ${PREFIX}/bin/
+cd ../ && rm -rf SA-SSR/
+
+
+# Fixes to earlGrey executable
+sed -i.bak "/CONDA_DEFAULT_ENV/,+4d" ${PACKAGE_HOME}/earlGrey  #remove check that conda environment has a specific name
+
+
+# Fixes sed command for executables so that it works on both linux and macos
+sed -i.bak "s|sed -i |sed -i.bak |g" ${PACKAGE_HOME}/earlGrey ${SCRIPT_DIR}/rcMergeRepeat* ${SCRIPT_DIR}/TEstrainer/TEstrainer_for_earlGrey.sh
+
+
+# Remove -pa from RepeatClassifier
+sed -i.bak 's/RepeatClassifier -pa ${THREADS} /RepeatClassifier /' ${SCRIPT_DIR}/TEstrainer/TEstrainer
+
+
+# Remove -t parameter from sa-ssr (since multithreading doesn't work on OSX)
+sed -i.bak 's/-t ${THREADS} / /' ${SCRIPT_DIR}/TEstrainer/TEstrainer_for_earlGrey.sh
+sed -i.bak 's/-t ${THREADS} / /' ${SCRIPT_DIR}/TEstrainer/TEstrainer
+
+
+# Add SCRIPT_DIR to correct path
+sed -i.bak "s|SCRIPT_DIR=.*|SCRIPT_DIR=${SCRIPT_DIR}|g" ${PACKAGE_HOME}/earlGrey
+sed -i.bak "s|SCRIPT_DIR=.*|SCRIPT_DIR=${SCRIPT_DIR}|g" ${SCRIPT_DIR}/rcMergeRepeat*
+sed -i.bak "s|SCRIPT_DIR=.*|SCRIPT_DIR=${SCRIPT_DIR}|g" ${SCRIPT_DIR}/headSwap.sh
+sed -i.bak "s|SCRIPT_DIR=.*|SCRIPT_DIR=${SCRIPT_DIR}|g" ${SCRIPT_DIR}/autoPie.sh
+sed -i.bak "s|INSERT_FILENAME_HERE|${SCRIPT_DIR}/TEstrainer/scripts/|g" ${SCRIPT_DIR}/TEstrainer/TEstrainer_for_earlGrey.sh
+
+
+# Set permissions to files
+chmod +x ${PACKAGE_HOME}/earlGrey
+chmod +x ${SCRIPT_DIR}/TEstrainer/TEstrainer_for_earlGrey.sh
+chmod +x ${SCRIPT_DIR}/* > /dev/null 2>&1
+chmod +x ${SCRIPT_DIR}/bin/LTR_FINDER.x86_64-1.0.7/ltr_finder
+chmod a+w ${SCRIPT_DIR}/repeatCraft/example
+
+# Extract tRNAdb
+tar -zxf ${SCRIPT_DIR}/bin/LTR_FINDER.x86_64-1.0.7/tRNAdb.tar.gz --directory ${SCRIPT_DIR}/bin/LTR_FINDER.x86_64-1.0.7 && rm -r ${SCRIPT_DIR}/bin/LTR_FINDER.x86_64-1.0.7/tRNAdb.tar.gz
+
+# test for conda
+df -h
+
+# Set PERL5LIB upon activate/deactivate
+for CHANGE in "activate" "deactivate";
+do
+  mkdir -p "${PREFIX}/etc/conda/${CHANGE}.d"
+done
+echo "#!/bin/sh" > "${PREFIX}/etc/conda/activate.d/${PKG_NAME}_activate.sh"
+echo "export PERL5LIB=${PREFIX}/share/RepeatMasker/:${PREFIX}/share/RepeatModeler/" >> "${PREFIX}/etc/conda/activate.d/${PKG_NAME}_activate.sh"
+echo "#!/bin/sh" > "${PREFIX}/etc/conda/deactivate.d/${PKG_NAME}_deactivate.sh"
+echo "unset PERL5LIB" >> "${PREFIX}/etc/conda/deactivate.d/${PKG_NAME}_deactivate.sh"
+
+
+# Put earlGrey executable in bin
+cd ${PREFIX}/bin
+ln -sf ${PACKAGE_HOME}/earlGrey .
diff --git a/recipes/earlgrey/meta.yaml b/recipes/earlgrey/meta.yaml
new file mode 100644
index 0000000000000..23b6f5dc2aa86
--- /dev/null
+++ b/recipes/earlgrey/meta.yaml
@@ -0,0 +1,76 @@
+{% set name = "EarlGrey" %}
+{% set version = "4.2.4" %}
+{% set sha256 = "b3fea85ff483f13e40294a24c05714ae40f4fe78186df4ca38f2e5d040890ecb" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/TobyBaril/EarlGrey/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('earlgrey', max_pin='x') }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('cxx') }}
+  run:
+    - python =3.9
+    - hmmer
+    - trf
+    - cd-hit
+    - genometools-genometools
+    - pandas
+    - ncls =0.0.64
+    - pyfaidx
+    - pyranges 
+    - parallel
+    - repeatmasker =4.1.5
+    - ltr_retriever
+    - mafft
+    - mreps
+    - ninja-nj
+    - repeatscout
+    - recon
+    - repeatmodeler >=2.0.4
+    - bioconductor-genomeinfodb
+    - bioconductor-genomeinfodbdata
+    - bioconductor-bsgenome
+    - bioconductor-plyranges
+    - r-ape
+    - r-optparse
+    - r-tidyverse
+    - r-plyr
+    - r-viridis
+    - r-cowplot
+    - r-ggtext
+    - bedtools
+    - emboss
+    - pybedtools
+
+test:
+  commands:
+    - df -h
+    - earlGrey -h
+
+about:
+  home: "https://github.com/TobyBaril/EarlGrey"
+  dev_url: "https://github.com/TobyBaril/EarlGrey"
+  doc_url: "https://github.com/TobyBaril/EarlGrey/blob/main/README.md"
+  license: OSL-2.1
+  license_file: LICENSE
+  summary: "Earl Grey: A fully automated TE curation and annotation pipeline"
+  description: |
+    Earl Grey is a full-automated transposable element (TE) annotation pipeline,
+    leveraging the most widely-used tools and combining these with a consensus
+    elongation process (BEAT) to better define de novo consensus sequences when
+    annotating new genome assemblies.
+    
+extra:
+  identifiers:
+    - doi:10.1093/molbev/msae068
diff --git a/recipes/easel/meta.yaml b/recipes/easel/meta.yaml
index f55b9746ca8f3..7dc561b70529f 100644
--- a/recipes/easel/meta.yaml
+++ b/recipes/easel/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "easel" %}
-{% set version = "0.48" %}
-{% set sha256 = "c5d055acbe88fa834e81424a15fc5fa54ac787e35f2ea72d4ffd9ea2c1aa29cf" %}
+{% set version = "0.49" %}
+{% set sha256 = "90f75bc4727e6dfb5f402d9f70cf4a606d9639f72d21e07461279d3f3f06b918" %}
 
 package:
   name: "{{ name|lower }}"
@@ -11,7 +11,7 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 3
+  number: 0
 
 requirements:
   build:
diff --git a/recipes/easypqp/meta.yaml b/recipes/easypqp/meta.yaml
index 48c4a2a01967b..3fea94c7a0227 100644
--- a/recipes/easypqp/meta.yaml
+++ b/recipes/easypqp/meta.yaml
@@ -1,20 +1,23 @@
 {% set name = "easypqp" %}
-{% set version = "0.1.37" %} 
+{% set version = "0.1.42" %}
+{% set sha256 = "5f7420d350769e7bc7defbae8e48dfed270ad4ae112ba0a74b47e39fedfbbe27" %}
 
 package:
-  name: '{{ name|lower }}'
-  version: '{{ version }}'
+  name: {{ name|lower }}
+  version: {{ version }}
 
 source:
-  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: f9ea9a5a5f15d692568d25ca50835f6461c0d5670c67ec2bdb382c37fda59962
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/easypqp-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
 
 build:
-  noarch: python
   number: 0
+  noarch: python
+  script: {{ PYTHON }} -m pip install . --use-pep517 --no-deps --no-build-isolation -vvv
   entry_points:
     - easypqp=easypqp.main:cli
-  script: {{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv
+  run_exports:
+    - {{ pin_subpackage('easypqp', max_pin="x") }}
 
 requirements:
   host:
@@ -22,9 +25,11 @@ requirements:
     - pip
   run:
     - python >=3.6
+    - numba
     - click
     - numpy
     - scipy
+    - scikit-learn
     - statsmodels
     - pandas
     - biopython
@@ -32,6 +37,7 @@ requirements:
     - pyopenms
     - matplotlib-base
     - seaborn
+    - tqdm
 
 test:
   imports:
@@ -40,11 +46,12 @@ test:
     - easypqp --help
 
 about:
-  home: https://github.com/grosenberger/easypqp
-  license: BSD License
+  home: https://pypi.org/project/easypqp/
+  summary: 'EasyPQP: Simple library generation for OpenSWATH'
+  license: BSD-3-Clause
   license_family: BSD
   license_file: LICENSE
-  summary: 'EasyPQP: Simple library generation for OpenSWATH'
+  dev_url: https://github.com/grosenberger/easypqp
   description: "EasyPQP: Simple library generation for OpenSWATH\n================================================\n\nEasyPQP is a Python package that provides simplified and fast peptide query parameter\
     \ generation for OpenSWATH. It can process input from MSFragger or other database search engines in pepXML format. Statistical validation can be conducted either using PyProphet or PeptideProphet/iProphet.\
     \ Retention times are calibrated using an internal or external standard. In addition to a cumulative library, run-specific libraries are generated for non-linear RT alignment in OpenSWATH.\n\nInstallation\n\
diff --git a/recipes/ebcsgen/meta.yaml b/recipes/ebcsgen/meta.yaml
index 959dead71e109..8b7c3b2d211b3 100644
--- a/recipes/ebcsgen/meta.yaml
+++ b/recipes/ebcsgen/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "eBCSgen" %}
-{% set version = "2.1.0" %}
+{% set version = "2.2.0" %}
 
 package:
   name: {{ name|lower }}
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://github.com/sybila/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz"
-  sha256: 604cac3facc314c01778102ab0285cdc2cdbb75edb8289a6e7cac28e820f0e2a
+  sha256: 023e2a0a3613ab36e9344d07e589f483283b306be9b760b4827b0807781b0743
 
 build:
   number: 0
   noarch: python
   script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
+  run_exports:
+      - {{ pin_subpackage('ebcsgen', max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/ebi-eva-common-pyutils/meta.yaml b/recipes/ebi-eva-common-pyutils/meta.yaml
new file mode 100644
index 0000000000000..c40859c6cea78
--- /dev/null
+++ b/recipes/ebi-eva-common-pyutils/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "ebi-eva-common-pyutils" %}
+{% set version = "0.6.7" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/ebi_eva_common_pyutils-{{ version }}.tar.gz
+  sha256: 004cc04bcf6c484bcaceaffcd8842beeb01860e0e0325f15ba531921658f6679
+
+build:
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  host:
+    - python
+    - pip
+  run:
+    - python
+    - requests
+    - lxml
+    - pyyaml
+    - cached-property
+    - retry
+
+test:
+  imports:
+    - ebi_eva_common_pyutils
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/EBIVariation/eva-common-pyutils
+  summary: EBI EVA - Common Python Utilities
+  license: Apache-2.0
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - apriltuesday
diff --git a/recipes/edta/build.sh b/recipes/edta/build.sh
index 6f788aca9f249..e47cfd13c7302 100644
--- a/recipes/edta/build.sh
+++ b/recipes/edta/build.sh
@@ -16,5 +16,16 @@ END
 
 chmod a+x ${PREFIX}/bin/EDTA.pl
 for name in ${EDTA_OTHER_PROGRAMS} ; do
-  ln -s ${PREFIX}/bin/EDTA.pl ${PREFIX}/bin/$(basename $name)
+  ln -sf ${PREFIX}/bin/EDTA.pl ${PREFIX}/bin/$(basename $name)
 done
+
+ln -sf ${EDTA_DIR}/development/EDTA_processI.pl ${PREFIX}/bin/
+
+LTR_FINDER_PARALLEL_DIR=${EDTA_DIR}/bin/LTR_FINDER_parallel
+
+cat <<END >>${PREFIX}/bin/LTR_FINDER_parallel
+#!/bin/bash
+perl ${LTR_FINDER_PARALLEL_DIR}/LTR_FINDER_parallel \$@
+END
+
+chmod a+x ${PREFIX}/bin/LTR_FINDER_parallel
\ No newline at end of file
diff --git a/recipes/edta/meta.yaml b/recipes/edta/meta.yaml
index e9f32040263c3..eb2e7f1763bc2 100644
--- a/recipes/edta/meta.yaml
+++ b/recipes/edta/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "EDTA" %}
-{% set version = "2.1.0" %}
-{% set sha256 = "d62425df133d7021db57b5b0ecdd38b21ac837c45a8237c0a1ec2da0bd21e6b6" %}
+{% set version = "2.2.0" %}
+{% set sha256 = "3515667804437f749f0bb934812ca83b23ec5472c221786f6e5a0d4b613a1a7a" %}
 
 package:
   name: "{{ name|lower }}"
@@ -13,33 +13,44 @@ source:
 build:
   number: 1
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('edta', max_pin='x') }}
 
 requirements:
   run:
-    - perl
+    - annosine2
+    - bedtools
+    - biopython
+    - blast
     - cd-hit
+    - coreutils
+    - genericrepeatfinder
+    - genometools-genometools
+    - glob2
+    - h5py
+    - hmmer
+    - irfinder
+    - keras
+    - ltr_finder
+    - ltr_retriever
     - repeatmodeler
-    - muscle
+    - matplotlib-base
     - mdust
-    - blast
+    - minimap2
+    - multiprocess
+    - muscle
+    - nodejs
     - openjdk
+    - pandas
+    - perl
     - perl-text-soundex
-    - multiprocess
+    - python >=3.8
     - regex
-    - tensorflow ==1.14
-    - keras >=2.2.4
-    - scikit-learn >=0.19.0
-    - biopython
-    - pandas
-    - glob2
-    - h5py <3
-    - python <3.7
+    - scikit-learn
+    - seqtk
+    - swifter
+    - tensorflow
     - tesorter
-    - genericrepeatfinder
-    - genometools-genometools
-    - ltr_retriever
-    - ltr_finder
-    - coreutils
 
 test:
   commands:
@@ -48,11 +59,20 @@ test:
     - EDTA_processI.pl -h 2>&1 | grep -i "Perform EDTA"
     - EDTA_raw.pl -h 2>&1 | grep -i "Obtain raw"
     - lib-test.pl -h 2>&1 | grep -i "To test"
+    - LTR_FINDER_parallel -check_dependencies > /dev/null
 
 about:
   home: https://github.com/oushujun/EDTA
   license: GPL-3.0-only
-  license_family: GPL
+  license_family: GPL3
   license_file: LICENSE
   summary: Extensive de-novo TE Annotator
   dev_url: https://github.com/oushujun/EDTA
+  doc_url: https://github.com/oushujun/EDTA/wiki
+
+extra:
+  identifiers:
+    - doi:10.1186/s13059-019-1905-y
+    - doi:10.1101/2022.10.09.511471
+    - biotools:EDTA
+    - usegalaxy-eu:edta
diff --git a/recipes/efishent/meta.yaml b/recipes/efishent/meta.yaml
index 1bb74d725abf6..47c583a9080f9 100644
--- a/recipes/efishent/meta.yaml
+++ b/recipes/efishent/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "eFISHent" %}
-{% set version = "0.0.4" %}
+{% set version = "0.0.5" %}
 
 package:
   name: {{ name|lower }}
@@ -7,12 +7,14 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/eFISHent-{{ version }}.tar.gz
-  sha256: 83d75d9295f53dfc19551754eaf01edcd61386da6fbdbc7d1e8d5a37ea244f15
+  sha256: 28d4bffc56257f263539fdcc27016a2a643cf1732f81b3b713580ea2ae17bae7
 
 build:
   number: 0
   noarch: python
   script: {{ PYTHON }} -m pip install . -vv
+  run_exports:
+    - {{ pin_subpackage("efishent", max_pin="x.x") }}
   entry_points:
     - efishent = eFISHent.cli:main
     - eFISHent = eFISHent.cli:main
@@ -42,7 +44,6 @@ requirements:
 
 test:
   commands:
-    - pip check
     - efishent --help
     - eFISHent --help
 
diff --git a/recipes/egglib/meta.yaml b/recipes/egglib/meta.yaml
index 5d2b27ff7e6ac..db7cc9d666615 100644
--- a/recipes/egglib/meta.yaml
+++ b/recipes/egglib/meta.yaml
@@ -1,18 +1,23 @@
 {% set name = "egglib" %}
-{% set version = "3.1.0" %}
+{% set version = "3.3.2" %}
 
 package:
   name: "{{ name|lower }}"
   version: "{{ version }}"
 
 source:
-  url: "https://files.pythonhosted.org/packages/8e/f1/4eacf0858c363251c21dffd01804a66343f3a02e0d2adfafbe08bed58a0e/EggLib-3.1.0.zip"
-  sha256: 82ec602a2497b2f37637b88c24ba6da6b6d575fb46e9771fc3c94519e1934144
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/EggLib-{{ version }}.zip
+  sha256: 596838f6504c5a0f7ae9da9fbe41a595c3113e27d764e1a09a9e8795ef79d056
 
 build:
-  number: 3
-  skip: True  # [py2k]
-  script: {{ PYTHON }} -m pip install . -vv
+  number: 0
+  skip: True  # [py < 38 or osx]
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
+  entry_points:
+    - egglib-config = egglib.cli.config:main
+    - egglib-test = egglib.cli.test:main
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   build:
@@ -24,6 +29,8 @@ requirements:
     - setuptools
   run:
     - python
+    - platformdirs
+    - click
 
 test:
   imports:
@@ -36,7 +43,7 @@ test:
 
 about:
   home: "https://egglib.org/"
-  license: "GNU General Public v3 or later (GPLv3+)"
+  license: "GPL-3.0-or-later"
   license_family: GPL3
   license_file: LICENSE
   summary: "Evolutionary Genetics and Genomics Library. EggLib is a C++/Python library and program package for evolutionary genetics and genomics. Main features are sequence data management, sequence polymorphism analysis, and coalescent simulations. EggLib is a flexible Python module with a performant underlying C++ library and allows fast and intuitive development of Python programs and scripts."
@@ -47,4 +54,5 @@ extra:
   recipe-maintainers:
     - ranwez
   identifiers:
-    - https://doi.org/10.1111/1755-0998.13672
+    - doi:10.1111/1755-0998.13672
+    - biotools:egglib
diff --git a/recipes/eggnog-mapper/meta.yaml b/recipes/eggnog-mapper/meta.yaml
index 0185ab5ff048a..0d75d92e6f678 100644
--- a/recipes/eggnog-mapper/meta.yaml
+++ b/recipes/eggnog-mapper/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "eggNOG-mapper" %}
-{% set version = "2.1.11" %}
+{% set version = "2.1.12" %}
 
 package:
   name: {{ name|lower }}
@@ -7,7 +7,7 @@ package:
 
 source:
   url: https://github.com/eggnogdb/eggnog-mapper/archive/refs/tags/{{ version }}.tar.gz
-  sha256: fbb86549e56662853997d7c2f5b5c35e29fb052e485194ba1f36428737730eba
+  sha256: b3c53fb0e606a5cfec75cbc84f7c215f57f43ce00d8e50f449513acdad76da73
 
 build:
   number: 0
diff --git a/recipes/eigensoft/0002-replace-finite.patch b/recipes/eigensoft/0002-replace-finite.patch
new file mode 100644
index 0000000000000..3e0bc94b5c927
--- /dev/null
+++ b/recipes/eigensoft/0002-replace-finite.patch
@@ -0,0 +1,13 @@
+diff --git a/src/admutils.c b/src/admutils.c
+index dae3657..35a4427 100644
+--- a/src/admutils.c
++++ b/src/admutils.c
+@@ -537,7 +537,7 @@ testnan (double *a, int n)
+   int i;
+ 
+   for (i = 0; i < n; i++) {
+-    if (!finite (a[i]))
++    if (!isfinite (a[i]))
+       fatalx ("(testnan) fails:  index %d\n", i);
+   }
+ }
diff --git a/recipes/eigensoft/0003-remove-wrong-cflag.patch b/recipes/eigensoft/0003-remove-wrong-cflag.patch
new file mode 100644
index 0000000000000..392dc3822ad25
--- /dev/null
+++ b/recipes/eigensoft/0003-remove-wrong-cflag.patch
@@ -0,0 +1,10 @@
+diff --git a/src/nicksrc/Makefile b/src/nicksrc/Makefile
+index 55d7733..2d1742d 100644
+--- a/src/nicksrc/Makefile
++++ b/src/nicksrc/Makefile
+@@ -1,4 +1,4 @@
+-override CFLAGS += -c -O3   -g -p -Wimplicit -I../../include
++override CFLAGS += -c -O3  -g -Wimplicit -I../../include
+ 
+ all: libnick.a
+ 
diff --git a/recipes/eigensoft/build.sh b/recipes/eigensoft/build.sh
index b5b73e3e95a8d..e5d538abac1ba 100644
--- a/recipes/eigensoft/build.sh
+++ b/recipes/eigensoft/build.sh
@@ -1,6 +1,5 @@
+set -xeuo pipefail
 cd src
-make clobber
-
 make all
 
 # Install (makefile install has hard-coded destination, so have to do this manually)
diff --git a/recipes/eigensoft/meta.yaml b/recipes/eigensoft/meta.yaml
index 01ab3fe31a440..346ef87b9d9b4 100644
--- a/recipes/eigensoft/meta.yaml
+++ b/recipes/eigensoft/meta.yaml
@@ -1,15 +1,22 @@
-package:
-  name: eigensoft
-  version: "8.0.0"
+{% set name = "eigensoft" %}
+{% set version = "8.0.0" %}
 
-build:
-  number: 3
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
 
 source:
-  url: https://github.com/DReichLab/EIG/archive/refs/tags/v8.0.0.tar.gz
+  url: https://github.com/DReichLab/EIG/archive/v{{ version }}.tar.gz
   sha256: e3459e8ac0134da369910454854eae5c7b261e8816318ccbd2d371b4c6c35741
   patches:
     - 0001-Add-gfortran-to-LDLIBS.patch
+    - 0002-replace-finite.patch
+    - 0003-remove-wrong-cflag.patch  # [osx]
+
+build:
+  number: 4
+  run_exports:
+    - {{ pin_subpackage('eigensoft', max_pin='x.x') }}
 
 requirements:
   build:
@@ -25,11 +32,15 @@ requirements:
 
 test:
   commands:
-    - smartpca > /dev/null 2>&1
+    - smartpca
+    # both tools crash without input, there is other way to check whether installation worked...
+    - which convertf
+    - which mergeit
 
 about:
   home: https://github.com/DReichLab/EIG
   license: Custom OSS
+  license_file: LICENSE.txt
   summary: The EIGENSOFT package implements methods for analzing population structure and performing stratification correction
 
 extra:
diff --git a/recipes/el_gato/build.sh b/recipes/el_gato/build.sh
new file mode 100644
index 0000000000000..73991f59b0666
--- /dev/null
+++ b/recipes/el_gato/build.sh
@@ -0,0 +1,6 @@
+#!/bin/bash
+
+$PYTHON -m pip install . -vv
+
+mkdir -p $PREFIX/bin/db
+cp el_gato/db/* $PREFIX/bin/db/
diff --git a/recipes/el_gato/meta.yaml b/recipes/el_gato/meta.yaml
new file mode 100644
index 0000000000000..7d299d85a9136
--- /dev/null
+++ b/recipes/el_gato/meta.yaml
@@ -0,0 +1,42 @@
+{% set name = "el_gato" %}
+{% set version = "1.15.2" %}
+{% set hash = "ef930f7e0e2940f7d28820fbfc19b2262d1898c82d8699ca47dbc4c851eb11ad" %}
+{% set user = "appliedbinf" %}
+
+package:
+  name: el_gato
+  version: {{ version }}
+
+source:
+  url: https://github.com/{{ user }}/{{ name }}/archive/refs/tags/{{ version }}.tar.gz
+  sha256: {{ hash }}
+
+build:
+  number: 0
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
+
+requirements:
+  host:
+    - python >=3.8,<3.12
+    - pip
+    - setuptools
+  run:
+    - python >=3.8,<3.12
+    - minimap2 >=2.24
+    - samtools >=1.15.1
+    - blast >=2.13
+    - ispcr >=33.0
+    - nextflow
+    - fpdf2
+
+test:
+  commands:
+    - el_gato.py --version
+
+about:
+  home: https://github.com/{{ user }}/{{ name }}
+  license: MIT
+  license_file: LICENSE
+  summary: Perform Legionella pneumophila Sequence Based Typing (SBT) from short reads or assemblies
diff --git a/recipes/elastic-blast/meta.yaml b/recipes/elastic-blast/meta.yaml
index fecb3b03eb94d..80e44cda57f33 100644
--- a/recipes/elastic-blast/meta.yaml
+++ b/recipes/elastic-blast/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.1.0" %}
+{% set version = "1.2.0" %}
 
 package:
   name: elastic-blast
@@ -6,24 +6,22 @@ package:
 
 source:
   url: https://files.pythonhosted.org/packages/source/e/elastic-blast/elastic_blast-{{ version }}.tar.gz
-  sha256: 2e7fe4c312e43b2990fbe3420fd8a67bf5566ea5ace6d400d3e68058038dfa81
+  sha256: 584238fc79befa4e90625752eeca928db4807a0b2e0f8956d1fa9d35c61c083f
 
 build:
-  number: 1
+  number: 0
   noarch: generic
   script: {{ PYTHON }} -m pip install . -vv
-
+  run_exports:
+    - {{ pin_subpackage("elastic-blast", max_pin="x") }}
 requirements:
   host:
     - pip
-    - python >=3.7
-    - google-cloud-sdk
-    - awscli
-    - awslimitchecker
+    - python >=3.7,<3.10
     - python-packit
     - importlib-metadata
   run:
-    - python >=3.7
+    - python >=3.7,<3.10
     - boto3
     - awscli
     - awslimitchecker
diff --git a/recipes/emblmygff3/meta.yaml b/recipes/emblmygff3/meta.yaml
index 6defdc5457da0..762e87ada7043 100644
--- a/recipes/emblmygff3/meta.yaml
+++ b/recipes/emblmygff3/meta.yaml
@@ -1,13 +1,13 @@
 {% set name = "EMBLmyGFF3" %}
-{% set version = "2.2" %}
-{% set sha256 = "225b2b50da9064f779e164b2859506d7540d11fa78f7d41b5c0d94f02f7845c5" %}
+{% set version = "2.3" %}
+{% set sha256 = "bdb7b2e60e388000d881ad839db68e7cf87e17e5f74a6a251f50f4262b929bd8" %}
 
 package:
   name: "{{ name|lower }}"
   version: "{{ version }}"
 
 source:
-  url: https://github.com/NBISweden/EMBLmyGFF3/archive/v{{ version }}.tar.gz
+  url: https://github.com/NBISweden/EMBLmyGFF3/archive/V{{ version }}.tar.gz
   sha256: {{ sha256 }}
 
 build:
@@ -15,14 +15,16 @@ build:
   entry_points:
     - EMBLmyGFF3 = EMBLmyGFF3:main
   script: python -m pip install --no-deps --ignore-installed .
-  number: 1
+  run_exports:
+    - {{ pin_subpackage('emblmygff3', max_pin="x") }}
+  number: 0
 
 
 requirements:
   host:
-    - python >=3.8.0
+    - python >=3.9.0
   run:
-    - python >=3.8.0
+    - python >=3.9.0
     - biopython >=1.78
     - bcbio-gff >=0.6.4
     - numpy >=1.22
diff --git a/recipes/emboss/meta.yaml b/recipes/emboss/meta.yaml
index 6d391404b6993..41e9c5d1c5814 100644
--- a/recipes/emboss/meta.yaml
+++ b/recipes/emboss/meta.yaml
@@ -3,8 +3,10 @@ package:
   version: "6.6.0"
 
 build:
-  number: 7
+  number: 9
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage("emboss", max_pin="x.x") }}
 
 source:
   url: ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz
@@ -19,10 +21,12 @@ requirements:
     - zlib
     - libgd
     - libpng
+    - libharu
   run:
     - zlib
     - libgd
     - libpng
+    - libharu
 
 about:
   home: http://emboss.open-bio.org/
@@ -37,3 +41,6 @@ test:
     -  sixpack --help
     -  seqret --help
 
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/emerald/build_failure.linux-64.yaml b/recipes/emerald/build_failure.linux-64.yaml
deleted file mode 100644
index cb3804399a82a..0000000000000
--- a/recipes/emerald/build_failure.linux-64.yaml
+++ /dev/null
@@ -1,104 +0,0 @@
-recipe_sha: e88e2ba900c56ea4f80c3c1be5fd188148542b8ce834fdaf7aa08bf0cb7b5c14  # The commit at which this recipe failed to build.
-skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
-log: |-
-  ELFEDIT=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-elfedit
-  GPROF=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gprof
-  LD=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ld
-  LD_GOLD=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ld.gold
-  NM=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-nm
-  OBJCOPY=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-objcopy
-  OBJDUMP=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-objdump
-  RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ranlib
-  READELF=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-readelf
-  SIZE=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-size
-  STRINGS=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-strings
-  STRIP=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-strip
-  INFO: activate-gcc_linux-64.sh made the following environmental changes:
-  BUILD=x86_64-conda-linux-gnu
-  CC=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc
-  CC_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc
-  CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/emerald-1.1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
-  CMAKE_ARGS=-DCMAKE_AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ar -DCMAKE_CXX_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ar -DCMAKE_C_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ar -DCMAKE_RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ranlib -DCMAKE_CXX_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ranlib -DCMAKE_C_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ranlib -DCMAKE_LINKER=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ld -DCMAKE_STRIP=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-strip -DCMAKE_FIND_ROOT_PATH_MODE_PROGRAM=NEVER -DCMAKE_FIND_ROOT_PATH_MODE_LIBRARY=ONLY -DCMAKE_FIND_ROOT_PATH_MODE_INCLUDE=ONLY -DCMAKE_FIND_ROOT_PATH=$PREFIX;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot -DCMAKE_INSTALL_PREFIX=$PREFIX -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_PROGRAM_PATH=$BUILD_PREFIX/bin;$PREFIX/bin
-  CMAKE_PREFIX_PATH=$PREFIX:$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr
-  CONDA_BUILD_SYSROOT=$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot
-  CONDA_TOOLCHAIN_BUILD=x86_64-conda-linux-gnu
-  CONDA_TOOLCHAIN_HOST=x86_64-conda-linux-gnu
-  CPP=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cpp
-  CPPFLAGS=-DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include
-  DEBUG_CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/emerald-1.1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
-  DEBUG_CPPFLAGS=-D_DEBUG -D_FORTIFY_SOURCE=2 -Og -isystem $PREFIX/include
-  GCC=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc
-  GCC_AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ar
-  GCC_NM=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-nm
-  GCC_RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ranlib
-  HOST=x86_64-conda-linux-gnu
-  LDFLAGS=-Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,$PREFIX/lib -Wl,-rpath-link,$PREFIX/lib -L$PREFIX/lib
-  MESON_ARGS=--buildtype release --prefix=$PREFIX -Dlibdir=lib
-  _CONDA_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_conda_cos6_linux_gnu
-  build_alias=x86_64-conda-linux-gnu
-  host_alias=x86_64-conda-linux-gnu
-  -BUILD=x86_64-conda_cos6-linux-gnu
-  -CONDA_BUILD_SYSROOT=
-  INFO: activate-gxx_linux-64.sh made the following environmental changes:
-  CXX=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c
-  CXXFLAGS=-fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/emerald-1.1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
-  CXX_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c
-  DEBUG_CXXFLAGS=-fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/emerald-1.1.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
-  GXX=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-g
-  -- The C compiler identification is GNU 12.2.0
-  -- The CXX compiler identification is GNU 12.2.0
-  -- Detecting C compiler ABI info
-  -- Detecting C compiler ABI info - done
-  -- Check for working C compiler: $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc - skipped
-  -- Detecting C compile features
-  -- Detecting C compile features - done
-  -- Detecting CXX compiler ABI info
-  -- Detecting CXX compiler ABI info - done
-  -- Check for working CXX compiler: $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c - skipped
-  -- Detecting CXX compile features
-  -- Detecting CXX compile features - done
-  -- Found GMP: $PREFIX/lib/libgmp.so
-  -- Configuring done (0.5s)
-  -- Generating done (0.0s)
-  -- Build files have been written to: $SRC_DIR
-  [ 20%] Building CXX object CMakeFiles/work.dir/src/main.cpp.o
-  [ 40%] Building CXX object CMakeFiles/work.dir/src/alpha_safe_paths.cpp.o
-  /opt/conda/conda-bld/emerald_1685382128353/work/src/alpha_safe_paths.cpp: In function 'void find_path(int64_t, int64_t, std::vector<long int>&, std::vector<std::vector<long int> >&, std::vector<long int>&)':
-  /opt/conda/conda-bld/emerald_1685382128353/work/src/alpha_safe_paths.cpp:41:14: error: 'function' is not a member of 'std'
-     41 |         std::function<bool(int64_t)> dfs = [&](int64_t current) {
-        |              ^~~~~~~~
-  /opt/conda/conda-bld/emerald_1685382128353/work/src/alpha_safe_paths.cpp:11:1: note: 'std::function' is defined in header '<functional>'; did you forget to '#include <functional>'?
-     10 | #include "alpha_safe_paths.h"
-     |#include <functional>
-     11 | #include "optimal_paths.h"
-  /opt/conda/conda-bld/emerald_1685382128353/work/src/alpha_safe_paths.cpp:41:23: error: expected primary-expression before 'bool'
-     41 |         std::function<bool(int64_t)> dfs = [&](int64_t current) {
-        |                       ^~~~
-  In file included from /opt/conda/conda-bld/emerald_1685382128353/work/src/optimal_paths.h:6,
-                   from /opt/conda/conda-bld/emerald_1685382128353/work/src/alpha_safe_paths.h:5,
-                   from /opt/conda/conda-bld/emerald_1685382128353/work/src/alpha_safe_paths.cpp:10:
-  /opt/conda/conda-bld/emerald_1685382128353/work/src/alpha_safe_paths.cpp:53:16: error: 'dfs' was not declared in this scope; did you mean 'ffs'?
-     53 |         assert(dfs(src));
-        |                ^~~
-  make[2]: *** [CMakeFiles/work.dir/build.make:90: CMakeFiles/work.dir/src/alpha_safe_paths.cpp.o] Error 1
-  make[1]: *** [CMakeFiles/Makefile2:83: CMakeFiles/work.dir/all] Error 2
-  make: *** [Makefile:91: all] Error 2
-  Traceback (most recent call last):
-    File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
-      sys.exit(main())
-    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
-      call_conda_build(action, config)
-    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
-      result = api.build(
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
-      return build_tree(
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
-      packages_from_this = build(metadata, stats,
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
-      utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
-      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
-      raise subprocess.CalledProcessError(proc.returncode, _args)
-  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/emerald_1685382128353/work/conda_build.sh']' returned non-zero exit status 2.
-# Last 100 lines of the build log.
diff --git a/recipes/emerald/meta.yaml b/recipes/emerald/meta.yaml
index 29f78212a812e..9e7f883929b5f 100644
--- a/recipes/emerald/meta.yaml
+++ b/recipes/emerald/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "1.1.0" %}
-{% set sha256 = "6d24c10662d51512210b99027af159e6847294e92770edb96ed6c2ac28fae5ce" %}
+{% set version = "1.2.1" %}
+{% set sha256 = "b2544882906d60bfb0ea93f9d9396857ed11374bb0f9b282b823b3f055d549fa" %}
 
 package:
   name: emerald
@@ -8,9 +8,13 @@ package:
 source:
   url: https://github.com/algbio/emerald/archive/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
+  patches:
+    - no_filesystem.patch
 
 build:
-  number: 2
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('emerald', max_pin="x") }}
 
 requirements:
   build:
diff --git a/recipes/emerald/no_filesystem.patch b/recipes/emerald/no_filesystem.patch
new file mode 100644
index 0000000000000..f6adebee62651
--- /dev/null
+++ b/recipes/emerald/no_filesystem.patch
@@ -0,0 +1,55 @@
+diff --git a/src/main.cpp b/src/main.cpp
+index 90b11ed..40e71f8 100644
+--- a/src/main.cpp
++++ b/src/main.cpp
+@@ -6,10 +6,10 @@
+ #include <random>
+ #include <vector>
+ #include <fstream>
+-#include <filesystem>
+ #include <unordered_map>
+ #include <string>
+ #include <sstream>
++#include <sys/stat.h>
+ 
+ #include <gmpxx.h>
+ #include <omp.h>
+@@ -19,8 +19,6 @@
+ #include "optimal_paths.h"
+ #include "draw_subgraph.h"
+ 
+-namespace fs = std::filesystem;
+-
+ int64_t print_usage(char **argv, int64_t help) {
+ 	std::cout << "Usage: " << argv[0] << " -f <clusterfile> -o <outputfile> [arguments]\n\n";
+ 	std::cout << "Optional arguments:\n";
+@@ -48,6 +46,11 @@ int64_t print_usage(char **argv, int64_t help) {
+ 	return help;
+ }
+ 
++bool file_exists(const std::string &filename) {
++	struct stat buffer;
++	return (stat (filename.c_str(), &buffer) == 0);
++}
++
+ struct Protein {
+ 	std::string descriptor;
+ 	std::string sequence;
+@@ -120,7 +123,7 @@ void run_case(const int64_t j, std::vector<std::stringbuf> &output) {
+ 
+ 	if (print_alignments > 0) {
+ 		std::string subop_fasta_file = "suboptimal_" + file_without_path_and_ending + '_' + std::to_string(i) + ".fasta";
+-		for (int fidx = 1; fs::exists(fs::path(subop_fasta_file)); fidx++) {
++		for (int fidx = 1; file_exists(subop_fasta_file); fidx++) {
+ 			subop_fasta_file = "suboptimal_" + file_without_path_and_ending + '_' + std::to_string(i) + '(' + std::to_string(fidx) + ").fasta";
+ 		}
+ 		alignments_into_fasta(print_alignments, d, a, b, subop_fasta_file);
+@@ -313,7 +316,7 @@ int main(int argc, char **argv) {
+ 		return print_usage(argv, 1);
+ 	}
+ 
+-	if (drawgraph && !fs::exists(fs::path(drawgraph_dir))) {
++	if (drawgraph && !file_exists(drawgraph_dir)) {
+ 		std::cerr << "Error: directory " << drawgraph_dir << " does not exist.\n";
+ 		return 2;
+ 	}
diff --git a/recipes/ena-upload-cli/meta.yaml b/recipes/ena-upload-cli/meta.yaml
index a0394a7c1503e..cd0ab25f80af4 100644
--- a/recipes/ena-upload-cli/meta.yaml
+++ b/recipes/ena-upload-cli/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "ena-upload-cli" %}
-{% set version = "0.6.2" %}
+{% set version = "0.7.1" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 6913873dd641a9618cc61f273ffcab69b5935557e7bf9332b0c91ba6345a5171
+  sha256: ee176f66a3ff7af7091eb45184fd2c1778581fc56d4a96410f14cd19312cce7e
 
 build:
   number: 0
@@ -15,21 +15,27 @@ build:
   entry_points:
     - ena-upload-cli = ena_upload.ena_upload:main
   script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage('ena-upload-cli', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - python
+    - python >=3.7
   run:
-    - genshi
-    - lxml
-    - pandas >=1.2.0
-    - pyyaml
-    - requests
-    - openpyxl
-    - python
+    - genshi ==0.7.*
+    - lxml >=4.9.3,<=5.0.0
+    - pandas >=2.0.3,<=3.0.0
+    - pyyaml ==5.*
+    - requests >=2.31.0,<=3.0.0
+    - openpyxl >=3.1.2,<=4.0.0
+    - jsonschema >=4.19.1
+    - pytest ==7.4.*
+    - python >=3.7
 
 test:
+  imports:
+    - ena_upload
   commands:
     - ena-upload-cli --help
 
diff --git a/recipes/ena-webin-cli/meta.yaml b/recipes/ena-webin-cli/meta.yaml
index c882105ee4fcd..3209133338b46 100644
--- a/recipes/ena-webin-cli/meta.yaml
+++ b/recipes/ena-webin-cli/meta.yaml
@@ -1,5 +1,5 @@
-{% set version="5.0.0" %}
-{% set sha="54f6eeba22a6759f4c20ebb8c23c67c7ca178d6caac4674e380ecdbaf1ebfe18" %}
+{% set version = "7.2.1" %}
+{% set sha256 = "91d9bbadb834ee2b33f3b15614e947844e78d06b2ea561bdda2304cc59a11aeb" %}
 
 package:
   name: ena-webin-cli
@@ -8,10 +8,12 @@ package:
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('ena-webin-cli', max_pin="x") }}
 
 source:
     url: https://github.com/enasequence/webin-cli/releases/download/{{ version }}/webin-cli-{{ version }}.jar
-    sha256: {{ sha }}
+    sha256: {{ sha256 }}
 
 requirements:
   run:
diff --git a/recipes/ensembl-vep/build.sh b/recipes/ensembl-vep/build.sh
index 839b486b3b945..36e0764a81cce 100644
--- a/recipes/ensembl-vep/build.sh
+++ b/recipes/ensembl-vep/build.sh
@@ -14,8 +14,9 @@ sed -i.bak 's@/convert_cache.pl@/vep_convert_cache@' INSTALL.pl
 # Find plugins in install directory
 sed -i.bak "s@'dir_plugins=s,'@'dir_plugins=s' => (\$RealBin || []),@" vep
 # Change location where INSTALL.pl looks for the zlib headers
-sed -i -e "s@/usr/include/zlib.h@${PREFIX}/include@" INSTALL.pl
+sed -i.bak -e "s@/usr/include/zlib.h@${PREFIX}/include@" INSTALL.pl
 
+rm *.bak
 
 # Copy executables & modules
 cp convert_cache.pl $target/vep_convert_cache
@@ -24,10 +25,10 @@ cp filter_vep $target/filter_vep
 cp vep $target/vep
 cp haplo $target/haplo
 cp variant_recoder $target/variant_recoder
-cp -r modules $target/modules
+cp -rf modules $target/modules
 
 chmod 0755 $target/
-ln -s $target/* $PREFIX/bin
+ln -sf $target/* $PREFIX/bin
 
 cd $target
 # Use external Bio::DB::HTS::Faidx instead of compiling interally
@@ -50,5 +51,5 @@ mv loftee-*/*.pl .
 mv loftee-*/*.pm .
 mv loftee-*/maxEntScan .
 mv loftee-*/splice_data .
-rm -f loftee.tar.gz
+rm -rf loftee.tar.gz
 rm -rf loftee-*
diff --git a/recipes/ensembl-vep/meta.yaml b/recipes/ensembl-vep/meta.yaml
index 85160b5f607d6..4bb5ccbc704d1 100644
--- a/recipes/ensembl-vep/meta.yaml
+++ b/recipes/ensembl-vep/meta.yaml
@@ -1,29 +1,30 @@
-{% set version="110.1" %}
+{% set name = "ensembl-vep" %}
+{% set version = "112.0" %}
 
 package:
-  name: ensembl-vep
+  name: {{ name }}
   version: {{ version }}
 
 source:
   url: https://github.com/Ensembl/ensembl-vep/archive/release/{{ version }}.tar.gz
-  sha256: 95b2238209bc9acfa01d4eff202dfbc22e8935abc64b750ea93d1c354a438bae
+  sha256: aaa1dc9815f41fec4efd466fcb6607bdfcd407b4f1b07b412412e93cc1bd0f40
 
 build:
   number: 0
   noarch: generic
-  
+  run_exports:
+    - {{ pin_subpackage('ensembl-vep', max_pin="x") }}
+
 requirements:
-  build:
-    - curl
   host:
     - perl
     - perl-archive-zip
+    - perl-dbi
     - perl-lwp-simple
+    - curl
     - unzip
-    - perl-dbi
   run:
     - perl
-    - htslib
     - perl-bioperl >=1.7.2
     - perl-bio-db-hts >=2.11
     - perl-dbi
@@ -34,6 +35,7 @@ requirements:
     - perl-sereal
     - perl-set-intervaltree
     - perl-text-csv
+    - htslib
     - unzip
 
 test:
@@ -45,12 +47,17 @@ test:
     - variant_recoder --help
 
 about:
-  home: http://www.ensembl.org/info/docs/tools/vep/index.html
-  license: Apache-2.0
-  summary: Ensembl Variant Effect Predictor
-  description: The VEP determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.
+  home: "https://www.ensembl.org/info/docs/tools/vep/index.html"
+  license: "Apache-2.0"
+  license_family: APACHE
+  summary: "Ensembl Variant Effect Predictor"
+  description: "The VEP determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions."
+  doc_url: "https://useast.ensembl.org/info/docs/tools/vep/script/vep_tutorial.html"
+  dev_url: "https://github.com/Ensembl/ensembl-vep"
 
 extra:
+  identifiers:
+    - biotools:vep
   notes: |
     This package installs only the variant effect predictor (VEP) library
     code. To install data libraries, you can use the 'vep_install' command
diff --git a/recipes/entrez-direct/aarch64.patch b/recipes/entrez-direct/aarch64.patch
new file mode 100644
index 0000000000000..897f38f6818d7
--- /dev/null
+++ b/recipes/entrez-direct/aarch64.patch
@@ -0,0 +1,115 @@
+diff -urN edirect.orig/cmd/build.sh edirect/cmd/build.sh
+--- edirect.orig/cmd/build.sh	2022-11-12 07:25:55
++++ edirect/cmd/build.sh	2024-03-08 22:13:47
+@@ -13,6 +13,7 @@
+   Darwin-*arm* )           platform=Silicon ;;
+   CYGWIN_NT-* | MINGW*-* ) platform=CYGWIN_NT ;;
+   Linux-*arm* )            platform=ARM ;;
++  Linux-*aarch64* )        platform=ARM64 ;;
+   * )                      platform=UNSUPPORTED ;;
+ esac
+ 
+@@ -94,7 +95,7 @@
+ fi
+ 
+ # erase any existing executables in current directory
+-for plt in Darwin Silicon Linux CYGWIN_NT ARM
++for plt in Darwin Silicon Linux CYGWIN_NT ARM ARM64
+ do
+   rm -f *.$plt
+ done
+@@ -103,6 +104,7 @@
+ mods="darwin amd64 Darwin \
+       darwin arm64 Silicon \
+       linux amd64 Linux \
++      linux arm64 ARM64 \
+       windows 386 CYGWIN_NT \
+       linux arm ARM"
+ 
+@@ -126,13 +128,13 @@
+   if [ "$cleanup" = true ]
+   then
+     # remove old executables from target
+-    for plt in Darwin Silicon Linux CYGWIN_NT ARM
++    for plt in Darwin Silicon Linux CYGWIN_NT ARM ARM64
+     do
+       rm -f $target/*.$plt
+     done
+   fi
+   # copy new executables to target
+-  for plt in Darwin Silicon Linux CYGWIN_NT ARM
++  for plt in Darwin Silicon Linux CYGWIN_NT ARM ARM64
+   do
+     for exc in xtract rchive transmute
+     do
+@@ -145,7 +147,7 @@
+ fi
+ 
+ # erase any remaining executables after compiling
+-for plt in Darwin Silicon Linux CYGWIN_NT ARM
++for plt in Darwin Silicon Linux CYGWIN_NT ARM ARM64
+ do
+   rm -f *.$plt
+ done
+diff -urN edirect.orig/extern/build.sh edirect/extern/build.sh
+--- edirect.orig/extern/build.sh	2024-03-04 11:00:38
++++ edirect/extern/build.sh	2024-03-08 22:14:43
+@@ -13,6 +13,7 @@
+   Darwin-*arm* )           platform=Silicon ;;
+   CYGWIN_NT-* | MINGW*-* ) platform=CYGWIN_NT ;;
+   Linux-*arm* )            platform=ARM ;;
++  Linux-*aarch64* )        platform=ARM64 ;;
+   * )                      platform=UNSUPPORTED ;;
+ esac
+ 
+@@ -51,7 +52,7 @@
+ fi
+ 
+ # erase any existing executables in current directory
+-for plt in Darwin Silicon Linux CYGWIN_NT ARM
++for plt in Darwin Silicon Linux CYGWIN_NT ARM ARM64
+ do
+   rm -f *.$plt
+ done
+@@ -64,7 +65,7 @@
+ done
+ 
+ # will be using "go run", erase executables after test complication
+-for plt in Darwin Silicon Linux CYGWIN_NT ARM
++for plt in Darwin Silicon Linux CYGWIN_NT ARM ARM64
+ do
+   rm -f *.$plt
+ done
+diff -urN edirect.orig/rchive edirect/rchive
+--- edirect.orig/rchive	2022-01-29 07:25:44
++++ edirect/rchive	2024-03-08 22:16:43
+@@ -62,6 +62,7 @@
+   Darwin-*arm* )           platform=Silicon ;;
+   CYGWIN_NT-* | MINGW*-* ) platform=CYGWIN_NT ;;
+   Linux-*arm* )            platform=ARM ;;
++  Linux-*aarch64* )        platform=ARM64 ;;
+   * )                      platform=UNSUPPORTED ;;
+ esac
+ compiled=$0."$platform"
+diff -urN edirect.orig/transmute edirect/transmute
+--- edirect.orig/transmute	2023-02-22 07:25:33
++++ edirect/transmute	2024-03-08 22:16:43
+@@ -402,6 +402,7 @@
+   Darwin-*arm* )           platform=Silicon ;;
+   CYGWIN_NT-* | MINGW*-* ) platform=CYGWIN_NT ;;
+   Linux-*arm* )            platform=ARM ;;
++  Linux-*aarch64* )        platform=ARM64 ;;
+   * )                      platform=UNSUPPORTED ;;
+ esac
+ compiled=$0."$platform"
+diff -urN edirect.orig/xtract edirect/xtract
+--- edirect.orig/xtract	2024-02-28 09:25:34
++++ edirect/xtract	2024-03-08 22:16:43
+@@ -110,6 +110,7 @@
+   Darwin-*arm* )           platform=Silicon ;;
+   CYGWIN_NT-* | MINGW*-* ) platform=CYGWIN_NT ;;
+   Linux-*arm* )            platform=ARM ;;
++  Linux-*aarch64* )        platform=ARM64 ;;
+   * )                      platform=UNSUPPORTED ;;
+ esac
+ compiled=$0."$platform"
diff --git a/recipes/entrez-direct/build.sh b/recipes/entrez-direct/build.sh
index 9771c20b4c018..99a82f92a55e0 100644
--- a/recipes/entrez-direct/build.sh
+++ b/recipes/entrez-direct/build.sh
@@ -3,18 +3,24 @@
 # Keep track of the process
 set -uex
 
+mkdir bin nobin
+# Don't install these most bespoke scripts
+mv custom-* idx-* pm-* xy-* nobin
+# Move ordinary scripts into a subdirectory for convenience
+mv $(find * -type d -prune -o -print | sed '/^[A-Z]/d;/[.]pdf$/d;/[.]pem$/d;/[.]py$/d;/conda/d;/build/d') bin
+
 mkdir -p $PREFIX/bin
-mv * $PREFIX/bin
-mkdir -p "$PREFIX/home"
-export HOME="$PREFIX/home"
+(cd cmd && sh -ex ./build.sh $PREFIX/bin)
+(cd extern && sh -ex ./build.sh $PREFIX/bin)
 
-# Needs to run in the install folder
-cd ${PREFIX}/bin
+# Ensure conda-build can tidy up this compiler cache tree
+test -d gopath && chmod -R u+wX gopath
 
-sh install.sh
+mkdir -p $PREFIX/bin/data $PREFIX/bin/help
+install -m 644 data/* $PREFIX/bin/data
+install -m 644 help/* $PREFIX/bin/help
 
-# clean up
-rm -rf eutils cmd 
-rm -rf *.log *.go *.yaml setup.sh install.sh *.gz *.pdf 
-rm -rf idx-* index-*  pm-*  custom* xy-* CA.pm cacert.pem
+install -m 755 bin/* $PREFIX/bin
 
+echo "Check for additional scripts to be installed to .../bin"
+ls
diff --git a/recipes/entrez-direct/meta.yaml b/recipes/entrez-direct/meta.yaml
index 9c509fc7a21c3..f4f4fc137f9bd 100644
--- a/recipes/entrez-direct/meta.yaml
+++ b/recipes/entrez-direct/meta.yaml
@@ -1,21 +1,24 @@
-{% set version = "16.2" %}
-{% set date = "20211103" %}
-{% set sha256 = "42124ac5aa9aed2bb399b064ad4dfe418b9facb6f61eef95ac7e92e7cc410dd3" %}
+{% set version = "21.6" %}
+{% set date = "20240308" %}
+{% set sha256 = "805e34f2705905a7aed49b8bcd1ed6a1a6c2acf1f7ea249349cbbce30cac30bd" %}
 
 package:
   name: entrez-direct
   version: {{ version }}
 
 build:
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("entrez-direct", max_pin="x") }}
 
 source:
-  url: https://raw.githubusercontent.com/biostars/conda-ready-entrez-direct/main/dist/edirect-16.2.20211103.tar.gz
+  url: https://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/versions/{{ version }}.{{ date }}/edirect.tar.gz
   sha256: {{ sha256 }}
+  patches:
+    - aarch64.patch
 
 requirements:
   build:
-    # The installer script downloads statically compiled binaries, so this is effectively just avoiding linter errors
     - {{ compiler('go') }}
   run:
     - wget
@@ -29,13 +32,17 @@ test:
     - esearch --help
     - elink --help
     - esummary --help
+    - rchive -version
+    - transmute -version
     - xtract -version
 
 about:
-  home: ftp://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/versions/{{ version }}.{{ date }}/README
+  home: https://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/versions/{{ version }}.{{ date }}/README
   license: PUBLIC DOMAIN
   summary: Entrez Direct (EDirect) is an advanced method for accessing the NCBI's set of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process.
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   container:
     extended-base: True
diff --git a/recipes/entrez-direct/xtract.patch b/recipes/entrez-direct/xtract.patch
deleted file mode 100644
index 5a9c413eb66a8..0000000000000
--- a/recipes/entrez-direct/xtract.patch
+++ /dev/null
@@ -1,30 +0,0 @@
---- setup.sh	2019-10-18 19:50:47.000000000 +0200
-+++ setup.sh.new	2020-02-03 08:32:53.591369832 +0100
-@@ -62,7 +62,8 @@
- 
- if [ -f xtract."$platform" ]
- then
--  chmod +x xtract."$platform"
-+  mv xtract."$osname" xtract
-+  chmod +x xtract
- else
-   echo "Unable to download xtract executable."
- fi
-@@ -113,17 +114,4 @@
-     | tee $advice
- fi
- 
--if [ -z "$prfx" ]
--then
--echo ""
--echo "or manually edit the PATH variable assignment in your .bash_profile file."
--echo ""
--echo "Would you like to do that automatically now? [y/N]"
--read response
--case "$response" in
--  [Yy]*      ) . $advice; echo "OK, done." ;;
--  [Nn]* | '' ) echo "Holding off, then." ;;
--  *          ) echo "Conservatively taking that as a no." ;;
--esac
--fi
- rm $advice
diff --git a/recipes/ephemeris/meta.yaml b/recipes/ephemeris/meta.yaml
index 23825c1b8f8f3..e6929208c86a9 100644
--- a/recipes/ephemeris/meta.yaml
+++ b/recipes/ephemeris/meta.yaml
@@ -1,42 +1,53 @@
+{% set name = "ephemeris" %}
+{% set version = "0.10.10" %}
+
 package:
-  name: ephemeris
-  version: "0.10.8"
+  name: {{ name }}
+  version: {{ version }}
 
 source:
-  url: https://files.pythonhosted.org/packages/92/56/0544ef43ecb994e543a81f68bbe65dd0ccaf1a21eaa3706a75190f4ba256/ephemeris-0.10.8.tar.gz
-  sha256: dd19c739ddb83ffbfa7d23b63e979f26602af2282c21a799cc52ea4342d62d37
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/ephemeris-{{ version }}.tar.gz
+  sha256: 397599341949e359c5dc1cb6bf8b4be06b14cc3d2e8fb404a3421f37d17c2b44
 
 build:
   number: 0
   noarch: python
-  preserve_egg_dir: True
   entry_points:
-    - get-tool-list=ephemeris.get_tool_list_from_galaxy:main
-    - shed-tools=ephemeris.shed_tools:main
-    - workflow-install=ephemeris.workflow_install:main
-    - run-data-managers=ephemeris.run_data_managers:main
-    - workflow-to-tools=ephemeris.generate_tool_list_from_ga_workflow_files:main
-    - setup-data-libraries=ephemeris.setup_data_libraries:main
-    - galaxy-wait=ephemeris.sleep:main
-  script: python -m pip install --no-deps --ignore-installed .
+    - get-tool-list = ephemeris.get_tool_list_from_galaxy:main
+    - shed-tools = ephemeris.shed_tools:main
+    - workflow-install = ephemeris.workflow_install:main
+    - run-data-managers = ephemeris.run_data_managers:main
+    - workflow-to-tools = ephemeris.generate_tool_list_from_ga_workflow_files:main
+    - setup-data-libraries = ephemeris.setup_data_libraries:main
+    - galaxy-wait = ephemeris.sleep:main
+    - install_tool_deps = ephemeris.install_tool_deps:main
+    - install-tool-deps = ephemeris.install_tool_deps:main
+    - set-library-permissions = ephemeris.set_library_permissions:main
+    - _idc-lint = ephemeris._idc_lint:main
+    - _idc-split-data-manager-genomes = ephemeris._idc_split_data_manager_genomes:main
+    - _idc-data-managers-to-tools = ephemeris._idc_data_managers_to_tools:main
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation . -vvv
+  run_exports:
+    - {{ pin_subpackage('ephemeris', max_pin="x.x") }}
 
 requirements:
   host:
-    - python
+    - python >=3.7
     - pip
   run:
-    - python
+    - python >=3.7
     - pyyaml
     - six >=1.9.0
     - bioblend >=0.10.0
     - jinja2
-    - galaxy-tool-util >=20.5.0
-    - galaxy-util >=20.5.0
+    - galaxy-tool-util >=20.9.1
+    - galaxy-util >=20.9.0
+    - pysam
+    - rich
 
 test:
   imports:
     - ephemeris
-
   commands:
     - get-tool-list --help
     - shed-tools --help
@@ -45,9 +56,13 @@ test:
     - workflow-to-tools --help
     - setup-data-libraries --help
     - galaxy-wait --help
+    - install_tool_deps --help
+    - install-tool-deps --help
+    - set-library-permissions --help
 
 about:
   home: https://github.com/galaxyproject/ephemeris
   license: Academic Free License (AFL)
   summary: 'Ephemeris is an opinionated library and set of scripts for managing the bootstrapping of Galaxy project plugins - tools, index data, and workflows.'
   license_family: OTHER
+  doc_url: https://ephemeris.readthedocs.io/en/latest/
diff --git a/recipes/epic2/meta.yaml b/recipes/epic2/meta.yaml
index bf674d7045e4c..278c65055a381 100644
--- a/recipes/epic2/meta.yaml
+++ b/recipes/epic2/meta.yaml
@@ -11,9 +11,11 @@ source:
   sha256: '{{ hash_value }}'
 
 build: 
-  number: 6
+  number: 7
   # Compilation errors on OSX
   skip: True  # [osx or py27]
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
 
 requirements:
   build:
@@ -25,6 +27,7 @@ requirements:
     - setuptools
     - pysam
     - htslib
+    - zlib
   run:
     - python
     - scipy
@@ -47,6 +50,8 @@ about:
   summary: 'Ultraperformant Chip-Seq broad domain finder based on SICER.'
   
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - doi:10.1093/bioinformatics/btz232
   recipe-maintainers:
diff --git a/recipes/epik/build.sh b/recipes/epik/build.sh
new file mode 100644
index 0000000000000..7bdd89211df09
--- /dev/null
+++ b/recipes/epik/build.sh
@@ -0,0 +1,24 @@
+#!/bin/bash
+set -ex
+
+export CPLUS_INCLUDE_PATH=${PREFIX}/include
+export CPP_INCLUDE_PATH=${PREFIX}/include
+export CXX_INCLUDE_PATH=${PREFIX}/include
+
+#to ensure zlib location
+export CFLAGS="$CFLAGS -I$PREFIX/include"
+export LDFLAGS="$LDFLAGS -L$PREFIX/lib"
+
+mkdir -p $PREFIX/bin
+mkdir -p $PREFIX/lib
+
+cmake -B build -DBUILD_SHARED_LIBS=ON --install-prefix=$PREFIX
+cmake --build build --target all
+cmake --install build
+
+ls $PREFIX/bin
+ls $PREFIX/lib
+
+chmod +x $PREFIX/bin/epik-aa
+chmod +x $PREFIX/bin/epik-dna
+chmod +x $PREFIX/bin/epik.py
diff --git a/recipes/epik/meta.yaml b/recipes/epik/meta.yaml
new file mode 100644
index 0000000000000..438e50ab8cc17
--- /dev/null
+++ b/recipes/epik/meta.yaml
@@ -0,0 +1,42 @@
+{% set name = "EPIK" %}
+{% set version = "0.2.0" %}
+{% set sha256 = "33db0a0fec8e89950110ea8c910947e00e224117dcba2a78d9347f61da4fe1cb" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/phylo42/{{ name|lower }}/releases/download/v{{ version }}/EPIK-v{{ version }}_src_for_bioconda.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('epik', max_pin="x.x") }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('cxx') }}
+    - cmake
+    - llvm-openmp  # [osx]
+  host:
+    - boost-cpp >=1.67
+    - zlib
+    - rapidjson
+  run:
+    - boost-cpp >=1.67
+    - llvm-openmp # [osx]
+    - python
+    - click
+
+
+about:
+  home: https://github.com/phylo42/epik
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "EPIK is a tool for fast alignement-free phylogenetic placements."
+  description: "EPIK uses pre-computed phylo-k-mers indexes (see package IPK) to rapidly place large amounts of sequences on a fixed phylogenetic tree. Please cite: doi.org/10.1093/bioinformatics/btad692"
+
diff --git a/recipes/epik/run_test.sh b/recipes/epik/run_test.sh
new file mode 100644
index 0000000000000..d35e1baf13fad
--- /dev/null
+++ b/recipes/epik/run_test.sh
@@ -0,0 +1,36 @@
+#!/usr/bin/env bash
+
+PASS=true
+
+# A
+echo "test A"
+command -v epik-dna
+if [ $? -ne 0  ]; then
+  echo "failed"
+  PASS=false
+fi
+
+# B
+echo "test B"
+command -v epik-aa
+if [ $? -ne 0 ]; then
+  echo "failed"
+  PASS=false
+fi
+
+# C
+echo "test C"
+epik-dna 2>&1 | grep "Evolutionary Placement with Informative K-mers"
+if [ $? -ne 0 ]; then
+  echo "failed"
+  PASS=false
+fi
+
+#D
+echo "test D"
+epik.py place --help
+if [ $? -ne 0 ]; then
+  echo "failed"
+  PASS=false
+fi
+
diff --git a/recipes/epiweeks/meta.yaml b/recipes/epiweeks/meta.yaml
index a4234b5846380..33383ba6b530a 100644
--- a/recipes/epiweeks/meta.yaml
+++ b/recipes/epiweeks/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "epiweeks" %}
-{% set version = "2.2.0" %}
+{% set version = "2.3.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,19 +7,21 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: e6f6de0952b36b7dd50d2a2eed7937f654cc50823329664d333ee753bbc5d026
+  sha256: 3c64ee0b217d0a03f0896fce3c35b73c848c3717790504893cb4eb61b9364bac
 
 build:
   number: 0
   noarch: python
   script: {{ PYTHON }} -m pip install . -vv
+  run_exports:
+    - {{ pin_subpackage('epiweeks', max_pin="x") }}
 
 requirements:
   host:
+    - python >=3.8
     - pip
-    - python >=3.7
   run:
-    - python >=3.7
+    - python >=3.8
 
 test:
   imports:
diff --git a/recipes/espresso/meta.yaml b/recipes/espresso/meta.yaml
index c75e80df30a03..336ead6120ef1 100644
--- a/recipes/espresso/meta.yaml
+++ b/recipes/espresso/meta.yaml
@@ -1,16 +1,18 @@
-{% set version = "1.3.2" %}
+{% set version = "1.4.0" %}
 
 package:
   name: espresso
   version: {{ version }}
 
 source:
-  sha256: c9d01f6e699ac9b7b781ee3726ee9c338bfd31442d3f9f25db5526f04424135e
+  sha256: 656a5ab152782e5bb195b25a3814a3b94c1ed9ae9c03a1692cf1bba0794d1295
   url: https://github.com/Xinglab/espresso/releases/download/v{{ version }}/espresso_v_{{ version|replace(".", "_") }}.tar.gz
 
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('espresso', max_pin="x") }}
 
 requirements:
   run:
diff --git a/recipes/eternafold/LICENSE b/recipes/eternafold/LICENSE
new file mode 100644
index 0000000000000..d75dae020965e
--- /dev/null
+++ b/recipes/eternafold/LICENSE
@@ -0,0 +1,64 @@
+CONTRAfold-SE / EternaFold license
+=====================
+Copyright (c) 2017, 2020-2022 The Board of Trustees of the Leland Stanford Junior University
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+* Redistributions of source code must retain the above copyright notice, this
+  list of conditions and the following disclaimer.
+
+* Redistributions in binary form must reproduce the above copyright notice,
+  this list of conditions and the following disclaimer in the documentation
+  and/or other materials provided with the distribution.
+
+* Neither the name of the copyright holder nor the names of its
+  contributors may be used to endorse or promote products derived from
+  this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+
+CONTRAfold license
+==================
+
+Copyright (c) 2006, Chuong Do
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are
+met:
+
+* Redistributions of source code must retain the above copyright
+  notice, this list of conditions and the following disclaimer.
+
+* Redistributions in binary form must reproduce the above
+  copyright notice, this list of conditions and the following disclaimer
+  in the documentation and/or other materials provided with the
+  distribution.
+
+* Neither the name of Stanford University nor the names of its
+  contributors may be used to endorse or promote products derived from
+  this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
+A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
+OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
+THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
diff --git a/recipes/eternafold/activate.sh b/recipes/eternafold/activate.sh
new file mode 100644
index 0000000000000..5672344d66bc0
--- /dev/null
+++ b/recipes/eternafold/activate.sh
@@ -0,0 +1,3 @@
+# Set environment variable pointing to binary and parameter files
+export ETERNAFOLD_PATH="${CONDA_PREFIX}/bin/eternafold"
+export ETERNAFOLD_PARAMETERS="${CONDA_PREFIX}/lib/eternafold-lib/parameters/EternaFoldParams.v1"
\ No newline at end of file
diff --git a/recipes/eternafold/build.sh b/recipes/eternafold/build.sh
new file mode 100644
index 0000000000000..9bd7afe070585
--- /dev/null
+++ b/recipes/eternafold/build.sh
@@ -0,0 +1,25 @@
+# Move to conda-specific src directory location
+cd $SRC_DIR/src
+
+# Build Eternafold
+make CXX=$CXX
+
+# Move built binaries to environment-specific location
+mkdir -p -v $PREFIX/bin/eternafold-bin
+cp contrafold api_test score_prediction $PREFIX/bin/eternafold-bin
+
+# Move relevant repo files to lib folder
+cd $PREFIX
+mkdir -p -v $PREFIX/lib/eternafold-lib
+cp -R $SRC_DIR/* $PREFIX/lib/eternafold-lib
+
+# Symlink binary as eternafold and place in PATH-available location
+ln -s $PREFIX/bin/eternafold-bin/contrafold $PREFIX/bin/eternafold
+
+# Copy the [de]activate scripts to $PREFIX/etc/conda/[de]activate.d.
+# This will allow them to be run on environment activation.
+for CHANGE in "activate" "deactivate"
+do
+    mkdir -p -v "${PREFIX}/etc/conda/${CHANGE}.d"
+    cp "${RECIPE_DIR}/${CHANGE}.sh" "${PREFIX}/etc/conda/${CHANGE}.d/${PKG_NAME}_${CHANGE}.sh"
+done
\ No newline at end of file
diff --git a/recipes/eternafold/deactivate.sh b/recipes/eternafold/deactivate.sh
new file mode 100644
index 0000000000000..535fa0953d152
--- /dev/null
+++ b/recipes/eternafold/deactivate.sh
@@ -0,0 +1,3 @@
+# UnSet environment variables on deactivation
+unset ETERNAFOLD_PATH
+unset ETERNAFOLD_PARAMETERS
\ No newline at end of file
diff --git a/recipes/eternafold/meta.yaml b/recipes/eternafold/meta.yaml
new file mode 100644
index 0000000000000..1c0d45eeba7a2
--- /dev/null
+++ b/recipes/eternafold/meta.yaml
@@ -0,0 +1,50 @@
+# Jinja variables help maintain the recipe as you'll update the version only here.
+# Using the name variable with the URL in line 16 is convenient
+# when copying and pasting from another recipe, but not really needed.
+{% set name = "eternafold" %}
+{% set version = "1.3.1" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/eternagame/EternaFold/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 8aa00b81b6068bff02954ef1621e7aa92f48aadcb3e89b322af46433553691b5
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('eternafold', max_pin="x") }}
+
+requirements:
+  build:
+    - {{ compiler('cxx') }}
+    - make
+
+test:
+  commands:
+    - test -f $PREFIX/bin/eternafold  # [unix]
+    # - if not exist %PREFIX%\bin\eternafold exit 1  # [win]
+    - eternafold  # [unix]
+
+about:
+  home: https://github.com/eternagame/EternaFold
+  summary: 'RNA structure prediction algorithm improved through crowdsourced training data'
+  description: |
+    EternaFold performs multitask learning to improve RNA structure prediction. 
+    Its training tasks include 1) predicting single structures, 2) maximizing the 
+    likelihood of structure probing data, and 3) predicting experimentally-measured 
+    affinities of RNA molecules to proteins and small molecules. Described in the paper 
+    https://www.nature.com/articles/s41592-022-01605-0
+  license: BSD-3-Clause
+  license_family: BSD
+  license_file: LICENSE
+  doc_url: https://eternagame.github.io/EternaFold
+  dev_url: https://github.com/eternagame/EternaFold
+
+extra:
+  recipe-maintainers:
+    # GitHub IDs for maintainers of the recipe.
+    - DasLab
+    - eternagame
diff --git a/recipes/eukulele/meta.yaml b/recipes/eukulele/meta.yaml
index 7a16a1f0ad8ba..23dce68e05f3c 100644
--- a/recipes/eukulele/meta.yaml
+++ b/recipes/eukulele/meta.yaml
@@ -1,17 +1,19 @@
-{% set version = "2.0.6" %}
-{% set sha256 = "6d3026124b27dd55d627f6728493ee088bfb81aded1e4c7e0dec621bbddd14d1" %}
+{% set version = "2.0.7" %}
+{% set sha256 = "e52ca613c92ef99a6f01e503674b1c35ee26de6c03c4cb58338278e3a348a394" %}
 
 package:
   name: eukulele
-  version: 2.0.6
+  version: 2.0.7
 
 build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps"
+  run_exports:
+    - {{ pin_subpackage('eukulele', max_pin="2.0.7") }}
 
 source:
-  url: https://github.com/AlexanderLabWHOI/EUKulele/archive/refs/tags/v2.0.6-2.tar.gz
+  url: https://github.com/AlexanderLabWHOI/EUKulele/archive/refs/tags/v2.0.7_3.tar.gz
   sha256: {{ sha256 }}
 
 test:
diff --git a/recipes/eva-sub-cli/build.sh b/recipes/eva-sub-cli/build.sh
new file mode 100644
index 0000000000000..aa7198453931d
--- /dev/null
+++ b/recipes/eva-sub-cli/build.sh
@@ -0,0 +1,21 @@
+#!/bin/bash
+
+BIOVALIDATOR_VERSION=2.2.1
+
+EVA_SUB_CLI="${PREFIX}/share/${PKG_NAME}-${PKG_VERSION}"
+mkdir -p ${PREFIX}/bin ${EVA_SUB_CLI}
+
+# Install eva-sub-cli
+$PYTHON -m pip install .
+cp bin/* ${PREFIX}/bin
+echo "Done with eva-sub-cli"
+
+cd ${EVA_SUB_CLI}
+
+# Install biovalidator from source
+curl -Lo biovalidator.zip https://github.com/elixir-europe/biovalidator/archive/refs/tags/v${BIOVALIDATOR_VERSION}.zip \
+    && unzip -q biovalidator.zip && rm biovalidator.zip \
+    && cd biovalidator-${BIOVALIDATOR_VERSION} \
+    && npm install && npm install -g \
+    && cd ..
+echo "Done with biovalidator"
diff --git a/recipes/eva-sub-cli/meta.yaml b/recipes/eva-sub-cli/meta.yaml
new file mode 100644
index 0000000000000..2b2ff86a1b018
--- /dev/null
+++ b/recipes/eva-sub-cli/meta.yaml
@@ -0,0 +1,60 @@
+{% set name = "eva-sub-cli" %}
+{% set version = "0.3" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/EBIvariation/eva-sub-cli/archive/v{{version}}.tar.gz
+  sha256: bf5e00ffd7f4a290350011ceb626f818111f8646975e5dd7247910555971e1bd
+
+build:
+  number: 0
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  host:
+    - nextflow >=21.10.0
+    - python >=3.8
+    - nodejs >=10.19.1
+    - vcf-validator >=0.9.6
+    - ebi-eva-common-pyutils >=0.6.1
+    - pyyaml
+    - jinja2
+    - openpyxl
+    - requests
+    - jsonschema
+    - unzip
+  run:
+    - nextflow >=21.10.0
+    - python >=3.8
+    - nodejs >=10.19.1
+    - vcf-validator >=0.9.6
+    - ebi-eva-common-pyutils >=0.6.1
+    - pyyaml
+    - jinja2
+    - openpyxl
+    - requests
+    - jsonschema
+
+test:
+  imports:
+    - eva_sub_cli
+  commands:
+    - biovalidator --help
+    - eva-sub-cli.py --help
+
+about:
+  home: https://github.com/EBIvariation/eva-sub-cli
+  summary: EVA Submission Command Line Interface
+  license: Apache-2.0
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - apriltuesday
+    - tcezard
+    - ebi-variation
diff --git a/recipes/evidencemodeler/build.sh b/recipes/evidencemodeler/build.sh
index f82c5c91f7089..6f53148d978bc 100755
--- a/recipes/evidencemodeler/build.sh
+++ b/recipes/evidencemodeler/build.sh
@@ -24,7 +24,7 @@ mkdir -p ${PREFIX}/etc/conda/deactivate.d
 
 cp -Rp ${SRC_DIR}/plugins ${SRC_DIR}/PerlLib ${SRC_DIR}/EvmUtils ${SRC_DIR}/EVidenceModeler ${EVM_HOME}
 cp -Rp ${SRC_DIR}/PerlLib ${BINARY_HOME}
-ln -s ${EVM_HOME}/EVidenceModeler ${BINARY_HOME}/EVidenceModeler
+cp -Rp ${EVM_HOME}/{EVidenceModeler,EvmUtils,PerlLib,plugins} ${BINARY_HOME}/
 
 #required ENV variable
 mkdir -p ${PREFIX}/etc/conda/activate.d/
diff --git a/recipes/evidencemodeler/meta.yaml b/recipes/evidencemodeler/meta.yaml
index b59298bc6f05e..f9e47e1f09777 100644
--- a/recipes/evidencemodeler/meta.yaml
+++ b/recipes/evidencemodeler/meta.yaml
@@ -10,7 +10,9 @@ source:
   sha256: 3ee69ad822a35204ff02b670fe047d8b0da250cf9f43ebabbe33ce47f498e668
 
 build:
-  number: 1
+  number: 2
+  run_exports:
+    - {{ pin_subpackage('evidencemodeler', max_pin='x') }}
 
 requirements:
   build:
diff --git a/recipes/evigene/build.sh b/recipes/evigene/build.sh
new file mode 100644
index 0000000000000..d55e09fafd6b1
--- /dev/null
+++ b/recipes/evigene/build.sh
@@ -0,0 +1,19 @@
+#!/bin/bash
+
+readonly EVIGENEHOME=${PREFIX}/opt/${PKG_NAME}-${PKG_VERSION}
+
+mkdir -p ${EVIGENEHOME}
+
+cd ${SRC_DIR}
+
+cp -Rp config lib scripts ${EVIGENEHOME}
+
+
+mkdir -p ${PREFIX}/etc/conda/activate.d/
+echo "export EVIGENEHOME=${EVIGENEHOME}" > ${PREFIX}/etc/conda/activate.d/${PKG_NAME}-${PKG_VERSION}.sh
+
+mkdir -p ${PREFIX}/etc/conda/deactivate.d/
+echo "unset EVIGENEHOME" > ${PREFIX}/etc/conda/deactivate.d/${PKG_NAME}-${PKG_VERSION}.sh
+
+find $EVIGENEHOME -name *.pl | xargs -I {} sed -i.bak '1 s|#!/usr/bin/perl|#!/usr/bin/env perl|g' {}
+find $EVIGENEHOME -name *.perl | xargs -I {} sed -i.bak '1 s|#!/usr/bin/perl|#!/usr/bin/env perl|g' {}
diff --git a/recipes/evigene/meta.yaml b/recipes/evigene/meta.yaml
new file mode 100644
index 0000000000000..a4c43d0e8aa4e
--- /dev/null
+++ b/recipes/evigene/meta.yaml
@@ -0,0 +1,45 @@
+{% set name = "evigene" %}
+{% set raw_version = "23jul15" %}
+{% set version = "23.7.15" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: http://arthropods.eugenes.org/EvidentialGene/other/evigene_old/{{ name }}{{ raw_version }}.tar
+  sha256: 8fe8e5c21ac3f8b7134d8e26593fe66647eb8b7ba2c1cd1c158fc811769b9539
+
+build:
+  noarch: generic
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('evigene', max_pin='x') }}
+
+requirements:
+  run:
+    - perl
+    - exonerate
+    - cd-hit
+    - blast
+
+test:
+  commands:
+    - capture_die=$(bash -c "$EVIGENEHOME/scripts/prot/tr2aacds.pl || true" 2>&1)
+    - echo "$capture_die" | grep "VERSION 2022.04.05"
+
+about:
+  home: http://arthropods.eugenes.org/EvidentialGene/
+  summary: 'A genome informatics project for Evidence Directed Gene Construction for Eukaryotes'
+  description: |
+    EvidentialGene is a genome informatics project for "Evidence Directed Gene Construction for Eukaryotes", 
+    for constructing high quality, accurate gene sets for animals and plants (any eukaryotes), being developed 
+    by Don Gilbert at Indiana University, gilbertd at indiana edu. The perl scripts are nested inside the 
+    'scripts' folder and, therefor can only be used by providing the full path 
+    such as '$EVIGENEHOME/scripts/prot/tr2aacds.pl -h'
+  license: Don Gilbert, gilbertd At indiana edu, 2018
+
+extra:
+  recipe-maintainers:
+    - gallvp
+
diff --git a/recipes/evofr/meta.yaml b/recipes/evofr/meta.yaml
index 1e9ebe496f0b9..e874ecf75867f 100644
--- a/recipes/evofr/meta.yaml
+++ b/recipes/evofr/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.1.20" %}
+{% set version = "0.1.22" %}
 
 package:
   name: evofr
@@ -6,27 +6,28 @@ package:
 
 source:
   url: https://pypi.io/packages/source/e/evofr/evofr-{{ version }}.tar.gz
-  sha256: eda7eb5f841ed773b0f4b7f12749bc95231ffc54854016932282db7770329ddc
+  sha256: 8643b54c985dd01ce915c1cf4f475d4f29370166ad62cde7619f66c9f50890e6
 
 build:
-  number: 1
+  number: 0
   noarch: python
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('evofr', max_pin="x") }}
 
 requirements:
   host:
-    - python >=3.9, <4
+    - python >=3.9,<4
     - pip
-    - poetry
-
+    - poetry-core >=1.0.0
   run:
-    - python >=3.9, <4
-    - numpy >=1.22.4, <2
-    - pandas >=1.4.2, <2
-    - jax >=0.4.1, <0.5.0
-    - jaxlib >=0.4.1, <0.5.0
-    - numpyro >=0.12.0, <0.13.0
-    - blackjax >=0.9.6, <0.10.0
+    - python >=3.9,<4
+    - numpy >=1.22.4
+    - pandas >=1.4.2
+    - jax >=0.4.14,<0.5.0
+    - jaxlib >=0.4.1,<0.5.0
+    - numpyro >=0.13.2,<0.14.0
+    - blackjax >=0.9.6,<0.10.0
 
 test:
   imports:
diff --git a/recipes/exomiser-rest-prioritiser/meta.yaml b/recipes/exomiser-rest-prioritiser/meta.yaml
index 973e22cc3904a..5f67ff79744ad 100644
--- a/recipes/exomiser-rest-prioritiser/meta.yaml
+++ b/recipes/exomiser-rest-prioritiser/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "13.2.0" %}
-{% set sha256 = "b8e00f32ad6bb7fc4c8244b544883d7f4de006676401eb60580f68b4cbe64323" %}
+{% set version = "14.0.0" %}
+{% set sha256 = "6817537b1e602f533219089fc89d6c1d154e26e61efb05a5de382a56eeba4094" %}
 
 package:
   name: exomiser-rest-prioritiser
@@ -12,10 +12,12 @@ source:
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage("exomiser-rest-prioritiser", max_pin="x") }}
 
 requirements:
   run:
-    - openjdk >=8
+    - openjdk >=17
     - zlib
 
 test:
@@ -25,4 +27,11 @@ test:
 about:
   home: https://github.com/exomiser/Exomiser
   summary: Exomiser prioritiser REST API
-  license: AGPL3
+  license: AGPL-3.0-or-later
+  license_family: AGPL
+  doc_url: https://exomiser.readthedocs.io/en/latest/
+  dev_url: https://github.com/exomiser/Exomiser
+
+extra:
+  identifiers:
+    - biotools:exomiser
diff --git a/recipes/exonerate/build.sh b/recipes/exonerate/build.sh
index 6b8ee4937a8a8..512cc3cc3a21f 100644
--- a/recipes/exonerate/build.sh
+++ b/recipes/exonerate/build.sh
@@ -1,4 +1,11 @@
 #!/bin/sh
+
+set -xe
+
+# Download newer config.{sub,guess} files
+wget "http://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.guess;hb=HEAD" -O config.guess
+wget "http://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.sub;hb=HEAD" -O config.sub
+
 mkdir -p ${PREFIX}/bin
 
 export CFLAGS="-I$PREFIX/include"
diff --git a/recipes/exonerate/conda_build_config.yaml b/recipes/exonerate/conda_build_config.yaml
new file mode 100644
index 0000000000000..8caf245450f76
--- /dev/null
+++ b/recipes/exonerate/conda_build_config.yaml
@@ -0,0 +1,5 @@
+c_compiler_version:
+  - 10 # [linux]
+
+cxx_compiler_version:
+  - 10 # [linux]
diff --git a/recipes/exonerate/meta.yaml b/recipes/exonerate/meta.yaml
index 3a6311a7d2c30..73b122af68549 100644
--- a/recipes/exonerate/meta.yaml
+++ b/recipes/exonerate/meta.yaml
@@ -9,7 +9,9 @@ source:
   sha256: f849261dc7c97ef1f15f222e955b0d3daf994ec13c9db7766f1ac7e77baa4042
 
 build:
-  number: 7
+  number: 8
+  run_exports:
+    - {{ pin_subpackage('exonerate', max_pin='x') }}
 
 requirements:
   build:
@@ -21,6 +23,7 @@ requirements:
   host:
     - glib
     - pcre
+    - wget
 
   run:
     - glib
@@ -32,10 +35,13 @@ test:
 
 about:
   home: https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate
-  license: GPL-3.0
+  license: GPL-3.0-or-later
+  license_file: COPYING
   summary: Exonerate - A generic tool for pairwise sequence comparison / alignment
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:exonerate
     
diff --git a/recipes/expam/meta.yaml b/recipes/expam/meta.yaml
index 93274865a946d..6ca6b72a1a13b 100644
--- a/recipes/expam/meta.yaml
+++ b/recipes/expam/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "expam" %}
-{% set version = "1.2.2.1" %}
+{% set version = "1.2.2.5" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 6eb4841583155ed9f0160b3b7d1f5f98f6ec1b7a121b2a20ed5443ccfb46eecd
+  sha256: 4a102a67da23c37598c0a0778d0caf99d4c6c0ea4286aff7ca0ab360dc5cda09
 
 build:
   number: 0
   skip: true  # [py < 38]
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vvv "
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('expam', max_pin="x") }}
 
 requirements:
   build:
diff --git a/recipes/expansionhunter/0001-adjust-cmake-targets.patch b/recipes/expansionhunter/0001-adjust-cmake-targets.patch
new file mode 100644
index 0000000000000..aa19d07467941
--- /dev/null
+++ b/recipes/expansionhunter/0001-adjust-cmake-targets.patch
@@ -0,0 +1,180 @@
+From 0edec7bfc6ecf2c5401f17abe10c96ccfdb193b3 Mon Sep 17 00:00:00 2001
+From: Lightning Auriga <lightning.auriga@gmail.com>
+Date: Mon, 11 Sep 2023 09:55:05 -0400
+Subject: [PATCH 1/4] adjust cmake targets
+
+---
+ CMakeLists.txt                                | 74 +------------------
+ ehunter/CMakeLists.txt                        | 10 +--
+ .../graph-tools-master-f421f4c/CMakeLists.txt |  4 +-
+ 3 files changed, 10 insertions(+), 78 deletions(-)
+
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index 461343e..e3bf3f2 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -1,7 +1,7 @@
+ cmake_minimum_required(VERSION 3.13)
+ project(ExpansionHunter)
+ 
+-set(CMAKE_CXX_STANDARD 11)
++set(CMAKE_CXX_STANDARD 14)
+ set(CMAKE_CXX_STANDARD_REQUIRED ON)
+ 
+ # Check for required packages:
+@@ -9,79 +9,11 @@ find_package(ZLIB REQUIRED)
+ find_package(BZip2 REQUIRED)
+ find_package(LibLZMA REQUIRED)
+ find_package(CURL REQUIRED)
+-find_package(Git REQUIRED)
+ 
+ include(ExternalProject)
+ set(installDir ${CMAKE_CURRENT_BINARY_DIR}/install)
+ 
+ 
+-ExternalProject_Add(htslib
+-	BUILD_IN_SOURCE YES
+-	GIT_REPOSITORY "https://github.com/samtools/htslib.git"
+-	GIT_TAG "1.10.2"
+-	UPDATE_COMMAND ""
+-	CONFIGURE_COMMAND ""
+-	BUILD_COMMAND $(MAKE)
+-	INSTALL_COMMAND $(MAKE) install prefix=${installDir}
+-	LOG_DOWNLOAD YES
+-)
+-
+-
+-# Setup user config to force same c++ compiler in boost
+-if((CMAKE_CXX_COMPILER_ID STREQUAL "GNU") OR (CMAKE_CXX_COMPILER_ID STREQUAL "Clang"))
+-    set(BOOST_UCONFIG "${CMAKE_BINARY_DIR}/user-config.jam")
+-    if(CMAKE_CXX_COMPILER_ID STREQUAL "GNU")
+-        file(WRITE "${BOOST_UCONFIG}" "using gcc : : \"${CMAKE_CXX_COMPILER}\" ;\n")
+-    elseif(CMAKE_CXX_COMPILER_ID STREQUAL "Clang")
+-        file(WRITE "${BOOST_UCONFIG}" "using clang : : \"${CMAKE_CXX_COMPILER}\" ;\n")
+-        set(B2_OPTIONS ${B2_OPTIONS} "toolset=clang")
+-    endif()
+-    set(BOOST_PATCH_COMMAND ${CMAKE_COMMAND} -E copy ${BOOST_UCONFIG} tools/build/src/user-config.jam)
+-endif()
+-
+-ExternalProject_Add(Boost
+-	BUILD_IN_SOURCE YES
+-	URL https://boostorg.jfrog.io/artifactory/main/release/1.73.0/source/boost_1_73_0.tar.bz2
+-	UPDATE_COMMAND ""
+-	PATCH_COMMAND ${BOOST_PATCH_COMMAND}
+-	CONFIGURE_COMMAND ./bootstrap.sh --prefix=${installDir}/lib
+-	BUILD_COMMAND ./b2 install -j8   --prefix=${installDir} --with-filesystem --with-system --with-program_options link=static ${B2_OPTIONS}
+-	INSTALL_COMMAND ""
+-)
+-
+-
+-ExternalProject_Add(spdlog
+-	GIT_REPOSITORY "https://github.com/gabime/spdlog.git"
+-	GIT_TAG "v1.6.1"
+-	UPDATE_COMMAND ""
+-	CMAKE_ARGS -DCMAKE_INSTALL_PREFIX:PATH=${installDir}
+-		-DCMAKE_C_COMPILER=${CMAKE_C_COMPILER}
+-		-DCMAKE_CXX_COMPILER=${CMAKE_CXX_COMPILER}
+-)
+-
+-
+-ExternalProject_Add(googletest
+-	GIT_REPOSITORY "https://github.com/google/googletest.git"
+-	GIT_TAG "release-1.10.0"
+-	UPDATE_COMMAND ""
+-	CMAKE_ARGS -DCMAKE_INSTALL_PREFIX:PATH=${installDir}
+-		-DCMAKE_C_COMPILER=${CMAKE_C_COMPILER}
+-		-DCMAKE_CXX_COMPILER=${CMAKE_CXX_COMPILER}
+-)
+-
+-
+-# CMAKE_CXX_STANDARD is required for OS X 10.15
+-ExternalProject_Add(abseil
+-	GIT_REPOSITORY "https://github.com/abseil/abseil-cpp"
+-	GIT_TAG "20210324.2"
+-	UPDATE_COMMAND ""
+-	CMAKE_ARGS -DCMAKE_INSTALL_PREFIX:PATH=${installDir}
+-		-DCMAKE_CXX_COMPILER=${CMAKE_CXX_COMPILER}
+-		-DCMAKE_CXX_STANDARD=11
+-		-DBUILD_TESTING=OFF
+-)
+-
+-
+ ExternalProject_Add(ehunter
+ 	SOURCE_DIR ${CMAKE_SOURCE_DIR}/ehunter
+ 	BUILD_ALWAYS YES
+@@ -94,6 +26,6 @@ ExternalProject_Add(ehunter
+ )
+ 
+ 
+-ExternalProject_Add_StepDependencies(ehunter configure
+-	Boost spdlog htslib googletest abseil)
++ExternalProject_Add_StepDependencies(ehunter configure)
++
+ 
+diff --git a/ehunter/CMakeLists.txt b/ehunter/CMakeLists.txt
+index de31781..f02a717 100644
+--- a/ehunter/CMakeLists.txt
++++ b/ehunter/CMakeLists.txt
+@@ -1,7 +1,7 @@
+ cmake_minimum_required(VERSION 3.13)
+ project(ExpansionHunter LANGUAGES C CXX)
+ 
+-set(CMAKE_CXX_STANDARD 11)
++set(CMAKE_CXX_STANDARD 14)
+ set(CMAKE_CXX_STANDARD_REQUIRED ON)
+ 
+ if (NOT CMAKE_BUILD_TYPE)
+@@ -12,11 +12,11 @@ endif ()
+ 
+ message(STATUS "BUILD_TYPE: ${CMAKE_BUILD_TYPE}")
+ 
+-set(Boost_USE_STATIC_LIBS ON)
++set(Boost_USE_STATIC_LIBS OFF)
+ find_package(Boost 1.73 REQUIRED COMPONENTS program_options filesystem system)
+ 
+ 
+-add_compile_options(-Wall -Werror -Wextra)
++add_compile_options(-Wall -Wextra)
+ 
+ enable_testing()
+ 
+@@ -120,12 +120,12 @@ target_link_libraries(ExpansionHunterLib PUBLIC
+         BZip2::BZip2
+         Threads::Threads
+         spdlog::spdlog
+-        absl::flat_hash_set)
++        absl::flat_hash_set -ldl -ldeflate)
+ 
+ add_executable(ExpansionHunter
+         app/ExpansionHunter.cpp
+         )
+-target_link_libraries(ExpansionHunter ExpansionHunterLib)
++target_link_libraries(ExpansionHunter ExpansionHunterLib -ldl -ldeflate)
+ 
+ add_executable(UnitTests
+         tests/AlignMatrixTest.cpp
+diff --git a/ehunter/thirdparty/graph-tools-master-f421f4c/CMakeLists.txt b/ehunter/thirdparty/graph-tools-master-f421f4c/CMakeLists.txt
+index f45b519..7575a61 100644
+--- a/ehunter/thirdparty/graph-tools-master-f421f4c/CMakeLists.txt
++++ b/ehunter/thirdparty/graph-tools-master-f421f4c/CMakeLists.txt
+@@ -4,7 +4,7 @@ project(graphtools CXX)
+ 
+ set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
+ 
+-set(CMAKE_CXX_STANDARD 11)
++set(CMAKE_CXX_STANDARD 14)
+ set(CMAKE_CXX_STANDARD_REQUIRED ON)
+ set(CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/cmake")
+ 
+@@ -28,7 +28,7 @@ if (CMAKE_CXX_COMPILER_ID STREQUAL "GNU")
+     set(GRAPHTOOLS_CXX_OPTIMIZATION_FLAGS "${GRAPHTOOLS_VECTORIZATION} -O2 -ftree-vectorize -finline-functions -fpredictive-commoning -fgcse-after-reload -funswitch-loops -ftree-slp-vectorize -fvect-cost-model -fipa-cp-clone -ftree-phiprop")
+ endif ()
+ 
+-SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${GRAPHTOOLS_CXX_OPTIMIZATION_FLAGS} -Wall -Werror -pedantic -Wsign-compare -Wno-missing-braces -Wno-deprecated-copy -Wno-unknown-warning-option")
++SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${GRAPHTOOLS_CXX_OPTIMIZATION_FLAGS} -Wall -pedantic -Wsign-compare -Wno-missing-braces -Wno-deprecated-copy -Wno-unknown-warning-option")
+ 
+ if (USE_ASAN)
+     SET(CLANG_ASAN "-O1 -g -fsanitize=address -fno-omit-frame-pointer")
+-- 
+2.39.1
+
diff --git a/recipes/expansionhunter/0002-specify-boost-for-make_unique.patch b/recipes/expansionhunter/0002-specify-boost-for-make_unique.patch
new file mode 100644
index 0000000000000..1d382ae750900
--- /dev/null
+++ b/recipes/expansionhunter/0002-specify-boost-for-make_unique.patch
@@ -0,0 +1,54 @@
+From 4350c993bf8d7745745e394a11b008c6a0ae5875 Mon Sep 17 00:00:00 2001
+From: Lightning Auriga <lightning.auriga@gmail.com>
+Date: Mon, 11 Sep 2023 09:56:54 -0400
+Subject: [PATCH 2/4] specify boost for make_unique
+
+---
+ ehunter/locus/LocusAnalyzer.cpp             | 6 +++---
+ ehunter/sample/HtsSeekingSampleAnalysis.cpp | 2 +-
+ 2 files changed, 4 insertions(+), 4 deletions(-)
+
+diff --git a/ehunter/locus/LocusAnalyzer.cpp b/ehunter/locus/LocusAnalyzer.cpp
+index 4549cd6..15d31b9 100644
+--- a/ehunter/locus/LocusAnalyzer.cpp
++++ b/ehunter/locus/LocusAnalyzer.cpp
+@@ -174,14 +174,14 @@ void LocusAnalyzer::addIrrPairFinder(std::string motif) { irrPairFinder_ = IrrPa
+ 
+ void LocusAnalyzer::addRepeatAnalyzer(std::string variantId, graphtools::NodeId nodeId)
+ {
+-    variantAnalyzers_.emplace_back(make_unique<RepeatAnalyzer>(
++    variantAnalyzers_.emplace_back(boost::make_unique<RepeatAnalyzer>(
+         std::move(variantId), locusSpec_.regionGraph(), nodeId, locusSpec_.genotyperParameters()));
+ }
+ 
+ void LocusAnalyzer::addSmallVariantAnalyzer(
+     string variantId, VariantSubtype subtype, vector<NodeId> nodes, optional<NodeId> refNode)
+ {
+-    variantAnalyzers_.emplace_back(make_unique<SmallVariantAnalyzer>(
++    variantAnalyzers_.emplace_back(boost::make_unique<SmallVariantAnalyzer>(
+         std::move(variantId), subtype, locusSpec_.regionGraph(), std::move(nodes), refNode,
+         locusSpec_.genotyperParameters()));
+ }
+@@ -196,4 +196,4 @@ void LocusAnalyzer::runVariantAnalysis(
+ }
+ 
+ }
+-}
+\ No newline at end of file
++}
+diff --git a/ehunter/sample/HtsSeekingSampleAnalysis.cpp b/ehunter/sample/HtsSeekingSampleAnalysis.cpp
+index 6f2a73e..20b9f25 100644
+--- a/ehunter/sample/HtsSeekingSampleAnalysis.cpp
++++ b/ehunter/sample/HtsSeekingSampleAnalysis.cpp
+@@ -297,7 +297,7 @@ void processLocus(
+ 
+             spdlog::info("Analyzing {}", locusId);
+             vector<unique_ptr<LocusAnalyzer>> locusAnalyzers;
+-            auto analyzer(make_unique<LocusAnalyzer>(locusSpec, heuristicParams, alignmentWriter));
++            auto analyzer(boost::make_unique<LocusAnalyzer>(locusSpec, heuristicParams, alignmentWriter));
+             locusAnalyzers.emplace_back(std::move(analyzer));
+             AnalyzerFinder analyzerFinder(locusAnalyzers);
+ 
+-- 
+2.39.1
+
diff --git a/recipes/expansionhunter/0003-add-missing-limits-import.patch b/recipes/expansionhunter/0003-add-missing-limits-import.patch
new file mode 100644
index 0000000000000..232f0849f3279
--- /dev/null
+++ b/recipes/expansionhunter/0003-add-missing-limits-import.patch
@@ -0,0 +1,24 @@
+From 0b636c4ed21211f3f3650eaa8a8a56eb93bd5ce7 Mon Sep 17 00:00:00 2001
+From: Lightning Auriga <lightning.auriga@gmail.com>
+Date: Mon, 11 Sep 2023 10:01:16 -0400
+Subject: [PATCH 3/4] add missing limits import
+
+---
+ .../include/graphcore/GraphCoordinates.hh                        | 1 +
+ 1 file changed, 1 insertion(+)
+
+diff --git a/ehunter/thirdparty/graph-tools-master-f421f4c/include/graphcore/GraphCoordinates.hh b/ehunter/thirdparty/graph-tools-master-f421f4c/include/graphcore/GraphCoordinates.hh
+index 7768312..36a4c9b 100644
+--- a/ehunter/thirdparty/graph-tools-master-f421f4c/include/graphcore/GraphCoordinates.hh
++++ b/ehunter/thirdparty/graph-tools-master-f421f4c/include/graphcore/GraphCoordinates.hh
+@@ -23,6 +23,7 @@
+ #include "graphalign/GraphAlignment.hh"
+ 
+ #include <memory>
++#include <limits>
+ 
+ namespace graphtools
+ {
+-- 
+2.39.1
+
diff --git a/recipes/expansionhunter/0004-add-fmt-formatters-for-classes.patch b/recipes/expansionhunter/0004-add-fmt-formatters-for-classes.patch
new file mode 100644
index 0000000000000..00d2394c1ae88
--- /dev/null
+++ b/recipes/expansionhunter/0004-add-fmt-formatters-for-classes.patch
@@ -0,0 +1,69 @@
+From f564325091e2a61b08a84a998fb938b117418a20 Mon Sep 17 00:00:00 2001
+From: Lightning Auriga <lightning.auriga@gmail.com>
+Date: Mon, 11 Sep 2023 10:02:32 -0400
+Subject: [PATCH 4/4] add fmt formatters for classes
+
+---
+ ehunter/core/GenomicRegion.hh | 12 ++++++++++++
+ ehunter/core/Read.hh          | 10 ++++++++++
+ 2 files changed, 22 insertions(+)
+
+diff --git a/ehunter/core/GenomicRegion.hh b/ehunter/core/GenomicRegion.hh
+index 3c5821d..2035d1a 100644
+--- a/ehunter/core/GenomicRegion.hh
++++ b/ehunter/core/GenomicRegion.hh
+@@ -24,10 +24,14 @@
+ #pragma once
+ 
+ #include <iostream>
++#include <sstream>
+ #include <string>
+ #include <unordered_map>
+ #include <vector>
+ 
++#include <fmt/core.h>
++#include <fmt/format.h>
++
+ #include "core/ReferenceContigInfo.hh"
+ 
+ namespace ehunter
+@@ -79,3 +83,11 @@ std::string encode(const ReferenceContigInfo& contigInfo, const GenomicRegion& r
+ GenomicRegion decode(const ReferenceContigInfo& contigInfo, const std::string& encoding);
+ 
+ }
++
++template <> struct fmt::formatter<ehunter::GenomicRegion> : formatter<string_view> {
++    auto format(const ehunter::GenomicRegion &region, format_context &ctx) const {
++        std::ostringstream o;
++        o << region;
++        return formatter<string_view>::format(o.str(), ctx);
++    }
++};
+diff --git a/ehunter/core/Read.hh b/ehunter/core/Read.hh
+index 3697b24..41be69e 100644
+--- a/ehunter/core/Read.hh
++++ b/ehunter/core/Read.hh
+@@ -28,6 +28,8 @@
+ #include <string>
+ 
+ #include <boost/functional/hash.hpp>
++#include <fmt/core.h>
++#include <fmt/format.h>
+ 
+ #include "alignment/AlignmentClassifier.hh"
+ #include "graphalign/GraphAlignment.hh"
+@@ -166,3 +168,11 @@ using ReadIdToRepeatAlignmentStats = std::unordered_map<std::string, RepeatAlign
+ std::ostream& operator<<(std::ostream& out, const Read& read);
+ 
+ }
++
++template <> struct fmt::formatter<ehunter::ReadId> : formatter<string_view> {
++    auto format(const ehunter::ReadId &readId, format_context &ctx) const {
++        std::ostringstream o;
++        o << readId;
++        return formatter<string_view>::format(o.str(), ctx);
++    }
++};
+-- 
+2.39.1
+
diff --git a/recipes/expansionhunter/brackets.patch b/recipes/expansionhunter/0005-apply-bioconda-4.0.2-patches.patch
similarity index 66%
rename from recipes/expansionhunter/brackets.patch
rename to recipes/expansionhunter/0005-apply-bioconda-4.0.2-patches.patch
index cc9fbb92c3f28..c083a392d873f 100644
--- a/recipes/expansionhunter/brackets.patch
+++ b/recipes/expansionhunter/0005-apply-bioconda-4.0.2-patches.patch
@@ -1,35 +1,45 @@
---- stats/WeightedPurityCalculator.cpp.old	2019-05-05 04:26:13.000000000 -0500
-+++ stats/WeightedPurityCalculator.cpp	2019-05-05 04:37:07.000000000 -0500
-@@ -71,49 +71,49 @@
-     const int maxBaseAscii = 255;
+From 2a3d4393ab892af7ea1378c68447477df2adbabc Mon Sep 17 00:00:00 2001
+From: Lightning Auriga <lightning.auriga@gmail.com>
+Date: Mon, 11 Sep 2023 10:30:13 -0400
+Subject: [PATCH 5/5] apply bioconda 4.0.2 patches
+
+---
+ ehunter/core/WeightedPurityCalculator.cpp     | 48 +++++++++----------
+ .../include/graphutils/BaseMatching.hh        | 40 ++++++++--------
+ 2 files changed, 44 insertions(+), 44 deletions(-)
+
+diff --git a/ehunter/core/WeightedPurityCalculator.cpp b/ehunter/core/WeightedPurityCalculator.cpp
+index 00764d1..e1de825 100644
+--- a/ehunter/core/WeightedPurityCalculator.cpp
++++ b/ehunter/core/WeightedPurityCalculator.cpp
+@@ -71,47 +71,47 @@ const int kMaxReferenceBaseCode = 19;
+ const int maxBaseAscii = 255;
  
-     const std::array<BaseCode, maxBaseAscii + 1> kReferenceBaseEncodingTable
--        = { X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
-+        = {{ X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
-             X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
-             X, A, B, C, D, X, X, G, H, X, X, K, X, M, N, X, X, X, R, S, T, X, V, W, X, Y, X, X, X, X, X, X,
-             X, A, X, C, X, X, X, G, X, X, X, X, X, X, X, X, X, X, X, X, T, X, X, X, X, X, X, X, X, X, X, X,
-             X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
-             X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
-             X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
--            X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X };
-+            X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X }};
+ const std::array<BaseCode, maxBaseAscii + 1> kReferenceBaseEncodingTable
+-    = { X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
++    = {{X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
+         X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, A, B, C, D, X, X, G, H, X,
+         X, K, X, M, N, X, X, X, R, S, T, X, V, W, X, Y, X, X, X, X, X, X, X, A, X, C, X, X, X, G, X, X, X, X, X, X, X,
+         X, X, X, X, X, T, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
+         X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
+         X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
+-        X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X };
++        X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X}};
  
-     const std::array<BaseCode, maxBaseAscii + 1> kQueryBaseEncodingTable
--        = { X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
-+        = {{ X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
-             X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
-             X, A, X, C, X, X, X, G, X, X, X, X, X, X, X, X, X, X, X, X, T, X, X, X, X, X, X, X, X, X, X, X,
-             X, a, X, c, X, X, X, g, X, X, X, X, X, X, X, X, X, X, X, X, t, X, X, X, X, X, X, X, X, X, X, X,
-             X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
-             X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
-             X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
--            X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X };
-+            X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X }};
+ const std::array<BaseCode, maxBaseAscii + 1> kQueryBaseEncodingTable
+-    = { X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
++    = {{X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
+         X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, A, X, C, X, X, X, G, X, X,
+         X, X, X, X, X, X, X, X, X, X, T, X, X, X, X, X, X, X, X, X, X, X, X, a, X, c, X, X, X, g, X, X, X, X, X, X, X,
+         X, X, X, X, X, t, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
+         X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
+         X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
+-        X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X };
++        X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X}};
  
-     const std::array<std::array<double, kMaxQueryBaseCode + 1>, kMaxReferenceBaseCode + 1>
-         kReferenceQueryCodeScoreLookupTable = {
-             // clang-format off
+ const std::array<std::array<double, kMaxQueryBaseCode + 1>, kMaxReferenceBaseCode + 1>
+     kReferenceQueryCodeScoreLookupTable = {
+         // clang-format off
            //    A    a     C    c     G    g     T    t     X
 -             {{ 1.0, 1.0, -1.0, 0.5, -1.0, 0.5, -1.0, 0.5, -1.0}, // A
 -              { 1.0, 1.0, -1.0, 0.5, -1.0, 0.5, -1.0, 0.5, -1.0}, // a
@@ -71,17 +81,19 @@
 +              {{ 1.0, 1.0,  1.0, 1.0,  1.0, 1.0, -1.0, 0.5, -1.0}}, // V
 +              {{ 1.0, 1.0, -1.0, 0.5, -1.0, 0.5,  1.0, 1.0, -1.0}}, // W
 +              {{-1.0, 0.5,  1.0, 1.0, -1.0, 0.5,  1.0, 1.0, -1.0}}} // Y
-             // clang-format on
-         };
+         // clang-format on
+     };
  
---- thirdparty/graph-tools-master/include/graphutils/BaseMatching.hh.old	2019-05-05 04:40:50.000000000 -0500
-+++ thirdparty/graph-tools-master/include/graphutils/BaseMatching.hh	2019-05-05 04:42:46.000000000 -0500
-@@ -63,47 +63,47 @@
+diff --git a/ehunter/thirdparty/graph-tools-master-f421f4c/include/graphutils/BaseMatching.hh b/ehunter/thirdparty/graph-tools-master-f421f4c/include/graphutils/BaseMatching.hh
+index dafcbaf..a8f0090 100644
+--- a/ehunter/thirdparty/graph-tools-master-f421f4c/include/graphutils/BaseMatching.hh
++++ b/ehunter/thirdparty/graph-tools-master-f421f4c/include/graphutils/BaseMatching.hh
+@@ -63,47 +63,47 @@ namespace codes
      // Core bases A, C, G, T and degenerate bases B, D, H, K, M, N, S, R, V, W, Y all receive distinct codes. All other
      // base symbols are coded as X, which is the code intended to mismatch everything.
      const std::array<BaseCode, maxBaseAscii + 1> kReferenceBaseEncodingTable
 -        = { X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
-+        = {{ X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
++        = {{X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
              X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
              X, A, B, C, D, X, X, G, H, X, X, K, X, M, N, X, X, X, R, S, T, X, V, W, X, Y, X, X, X, X, X, X,
              X, A, X, C, X, X, X, G, X, X, X, X, X, X, X, X, X, X, X, X, T, X, X, X, X, X, X, X, X, X, X, X,
@@ -89,12 +101,12 @@
              X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
              X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
 -            X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X };
-+            X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X }};
++            X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X}};
  
      // Core bases A, C, G, T all recieve distinct codes. All other base symbols are coded as X.
      const std::array<BaseCode, maxBaseAscii + 1> kQueryBaseEncodingTable
 -        = { X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
-+        = {{ X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
++        = {{X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
              X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
              X, A, X, C, X, X, X, G, X, X, X, X, X, X, X, X, X, X, X, X, T, X, X, X, X, X, X, X, X, X, X, X,
              X, A, X, C, X, X, X, G, X, X, X, X, X, X, X, X, X, X, X, X, T, X, X, X, X, X, X, X, X, X, X, X,
@@ -102,7 +114,7 @@
              X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
              X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X,
 -            X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X };
-+            X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X }};
++            X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X, X}};
  
      // We use the standard matching rules for degenerate bases. The X symbol corresponds to a mismatch
      const std::array<std::array<bool, codes::kMaxQueryBaseCode + 1>, codes::kMaxReferenceBaseCode + 1>
@@ -144,3 +156,6 @@
              }
              // clang-format on
          };
+-- 
+2.39.1
+
diff --git a/recipes/ms2deepscore/LICENCE b/recipes/expansionhunter/LICENSE.txt
similarity index 99%
rename from recipes/ms2deepscore/LICENCE
rename to recipes/expansionhunter/LICENSE.txt
index 261eeb9e9f8b2..6b0b1270ff0ca 100644
--- a/recipes/ms2deepscore/LICENCE
+++ b/recipes/expansionhunter/LICENSE.txt
@@ -1,3 +1,4 @@
+
                                  Apache License
                            Version 2.0, January 2004
                         http://www.apache.org/licenses/
@@ -199,3 +200,4 @@
    WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
    See the License for the specific language governing permissions and
    limitations under the License.
+
diff --git a/recipes/expansionhunter/build.sh b/recipes/expansionhunter/build.sh
index 1b5a0ed9fd123..137e450f192d5 100644
--- a/recipes/expansionhunter/build.sh
+++ b/recipes/expansionhunter/build.sh
@@ -1,18 +1,10 @@
 #!/bin/bash
-
-set -eu -o pipefail
-
-mkdir -p build
+mkdir build
 cd build
-
-export BOOST_ROOT=${PREFIX}
-export C_INCLUDE_PATH=${PREFIX}/include
-export CPP_INCLUDE_PATH=${PREFIX}/include
-export CXX_INCLUDE_PATH=${PREFIX}/include
-export CPLUS_INCLUDE_PATH=${PREFIX}/include
-export LIBRARY_PATH=${PREFIX}/lib
-
 cmake ..
-make CXX="$CXX" CC="$CC" CXXFLAGS="$CXXFLAGS" LDFLAGS="$LDFLAGS"
-
-mv ExpansionHunter ${PREFIX}/bin/ExpansionHunter
+make
+mkdir -p $PREFIX/bin
+cp install/bin/ExpansionHunter $PREFIX/bin
+mkdir -p $PREFIX/share/ExpansionHunter
+cp -R ../variant_catalog $PREFIX/share/ExpansionHunter
+chmod a-x $PREFIX/share/ExpansionHunter/variant_catalog/*/*json
diff --git a/recipes/expansionhunter/conda_build_config.yaml b/recipes/expansionhunter/conda_build_config.yaml
new file mode 100644
index 0000000000000..8de73a630719c
--- /dev/null
+++ b/recipes/expansionhunter/conda_build_config.yaml
@@ -0,0 +1,4 @@
+boost:
+  - 1.82
+pin_run_as_build:
+  boost: x.x
diff --git a/recipes/expansionhunter/meta.yaml b/recipes/expansionhunter/meta.yaml
index 033fab1a7aca4..9e2552fbe11df 100644
--- a/recipes/expansionhunter/meta.yaml
+++ b/recipes/expansionhunter/meta.yaml
@@ -1,47 +1,49 @@
 {% set name = "ExpansionHunter" %}
-{% set version = "4.0.2" %}
-{% set sha256 = "cbe66f09b8d86499966ae6da8655de04976e097227656495644fde4a69104525" %}
+{% set version = "5.0.0" %}
+{% set sha256 = "921d1f8be658f2bdd144150278210bb921d605af921816e94a7508c0b9b9dfff" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
-
-build:
-  number: 1
-
 source:
   url: https://github.com/Illumina/ExpansionHunter/archive/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
   patches:
-    - brackets.patch  # [osx]
-
+    - 0001-adjust-cmake-targets.patch
+    - 0002-specify-boost-for-make_unique.patch
+    - 0003-add-missing-limits-import.patch
+    - 0004-add-fmt-formatters-for-classes.patch
+    - 0005-apply-bioconda-4.0.2-patches.patch  # [osx]
+build:
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('expansionhunter', max_pin="x") }}
 requirements:
   build:
-    - make
     - {{ compiler('cxx') }}
-    - {{ compiler('c') }}
+    - make
     - cmake
   host:
-    - boost-cpp
-    - icu
+    - abseil-cpp >=20210324.2,<20210324.3
+    - boost >=1.73
+    - bzip2
+    - fmt
+    - gmock
+    - gtest >=1.10.0
+    - htslib >=1.10.2
+    - libcurl
+    - libdeflate
+    - spdlog >=1.6.1
+    - xz
     - zlib
-    - htslib
   run:
-    - boost-cpp
-    - icu
-    - zlib
-    - htslib
-
+    - boost
 test:
   commands:
-  - ExpansionHunter --help 2>&1 | grep "help"
-
+    - test -f ${PREFIX}/bin/ExpansionHunter
+    - ExpansionHunter --help
 about:
   home: https://github.com/Illumina/ExpansionHunter
-  license: Apache v2.0
-  license_family: Apache
+  license: APACHE
   license_file: LICENSE.txt
   summary: "A tool for estimating repeat sizes"
-extra:
-  skip-lints:
-    - should_not_be_noarch_source
diff --git a/recipes/ezaai/build.sh b/recipes/ezaai/build.sh
index 125996f06d360..1c8fd24997d5c 100644
--- a/recipes/ezaai/build.sh
+++ b/recipes/ezaai/build.sh
@@ -2,7 +2,8 @@
 EZ_AAI_JAR_NAME="EzAAI.jar"
 EZ_AAI_LICENSE="LICENSE.md"
 
-EZ_AAI_BIN="${PREFIX}/bin/EzAAI"
+EZ_AAI_BIN="${PREFIX}/bin/ezaai"
+EZ_AAI_BIN_ALT="${PREFIX}/bin/EzAAI"
 
 # Copy the JAR to the resource directory
 TARGET="${PREFIX}/share/${PKG_NAME}-${PKG_VERSION}-${PKG_BUILDNUM}"
@@ -12,6 +13,9 @@ cp "${EZ_AAI_LICENSE}" "${TARGET}"
 
 # Alias the JAR in the bin directory
 mkdir -p "${PREFIX}/bin"
-echo '#!/usr/bin/env bash' > "${EZ_AAI_BIN}"
-echo  "java -jar ${TARGET}/${EZ_AAI_JAR_NAME} \$@" >> "${EZ_AAI_BIN}"
+cat << EOF > "${EZ_AAI_BIN}"
+#!/bin/sh
+exec java -jar "${TARGET}/${EZ_AAI_JAR_NAME}" "\${@}"
+EOF
 chmod +x "${EZ_AAI_BIN}"
+cp "${EZ_AAI_BIN}" "${EZ_AAI_BIN_ALT}"
diff --git a/recipes/ezaai/meta.yaml b/recipes/ezaai/meta.yaml
index f2ac8a0971924..c3376bf7614bf 100644
--- a/recipes/ezaai/meta.yaml
+++ b/recipes/ezaai/meta.yaml
@@ -1,16 +1,18 @@
 {% set name = "EzAAI" %}
-{% set version = "1.2.2" %}
-{% set sha256 = "657f2b131e2564f291ef22417cabcd6615cdf88c59f3c553ceccd3ea3b86e564" %}
+{% set version = "1.2.3" %}
+{% set sha256 = "dbf2433928edb223f5fb6c105e3a32ae7784bac7f2ab506a5d9470d13d240332" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://github.com/endixk/ezaai/archive/refs/tags/v{{ version }}.tar.gz
+  url: https://github.com/endixk/ezaai/releases/download/v{{ version }}/ezaai-bin.tar.gz
   sha256: {{ sha256 }}
 
 build:
+  run_exports:
+    - {{ pin_subpackage('ezaai', max_pin="x") }}
   noarch: generic
   number: 0 
 
@@ -24,7 +26,7 @@ requirements:
 
 test:
   commands:
-    - EzAAI -h
+    - ezaai -h
 
 about:
   home: http://leb.snu.ac.kr/ezaai
diff --git a/recipes/ezomero/meta.yaml b/recipes/ezomero/meta.yaml
new file mode 100644
index 0000000000000..97d8d21b17bb5
--- /dev/null
+++ b/recipes/ezomero/meta.yaml
@@ -0,0 +1,35 @@
+{% set version = "3.0.1" %}
+{% set name = "ezomero" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: 2fc7c85626e013bb993d2da300d870bbfdf395d1574f72af086b12d182eebe95
+
+build:
+  noarch: python
+  number: 0
+  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  run_exports:
+    - {{ pin_subpackage("ezomero", max_pin="x.x") }}
+requirements:
+  host:
+    - pip
+    - python >=3.8
+  run:
+    - python >=3.8
+    - omero-py =5.16
+    - numpy >=1.22,<2.0
+      
+test:
+  imports:
+    - ezomero
+
+about:
+  home: https://github.com/TheJacksonLaboratory/ezomero
+  license: GPL-2.0-only
+  license_file: LICENSE
+  summary: A module with convenience functions for writing Python code that interacts with OMERO
diff --git a/recipes/f5c/1.2/build.sh b/recipes/f5c/1.2/build.sh
new file mode 100644
index 0000000000000..89e1f0240816d
--- /dev/null
+++ b/recipes/f5c/1.2/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+scripts/install-hts.sh
+scripts/install-zstd.sh
+./configure  --enable-localzstd
+cd slow5lib
+make CC=$CC CXX=$CXX
+cd ..
+export CFLAGS="${CFLAGS} -D__STDC_FORMAT_MACROS"
+make  CC=$CC CXX=$CXX
+mkdir -p $PREFIX/bin
+cp f5c $PREFIX/bin/f5c
diff --git a/recipes/f5c/1.2/meta.yaml b/recipes/f5c/1.2/meta.yaml
new file mode 100644
index 0000000000000..c8b4bd4c63cca
--- /dev/null
+++ b/recipes/f5c/1.2/meta.yaml
@@ -0,0 +1,37 @@
+{% set name = "f5c" %}
+{% set version = "1.2" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/hasindu2008/f5c/releases/download/v{{ version }}/f5c-v{{ version }}-release.tar.gz
+  sha256: 1dfec496138fb024623fed2ae5e5fc5759d920d11cbcb570cd9ced001f48687b
+
+build:
+  number: 2
+
+requirements:
+  build:
+    - make
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+  host:
+    - zlib
+    - hdf5
+    - wget
+  run:
+    - zlib
+    - hdf5
+
+test:
+  commands:
+    - f5c --help
+    - f5c --version
+
+about:
+  home: https://github.com/hasindu2008/f5c
+  license: MIT
+  license_file: LICENSE
+  summary: 'An optimised re-implementation of the call-methylation and eventalign modules in Nanopolish.'
diff --git a/recipes/f5c/meta.yaml b/recipes/f5c/meta.yaml
index c8b4bd4c63cca..5b8c3e4ee649d 100644
--- a/recipes/f5c/meta.yaml
+++ b/recipes/f5c/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "f5c" %}
-{% set version = "1.2" %}
+{% set version = "1.4" %}
 
 package:
   name: {{ name }}
@@ -7,10 +7,12 @@ package:
 
 source:
   url: https://github.com/hasindu2008/f5c/releases/download/v{{ version }}/f5c-v{{ version }}-release.tar.gz
-  sha256: 1dfec496138fb024623fed2ae5e5fc5759d920d11cbcb570cd9ced001f48687b
+  sha256: 9336b35caf6486f9fffc791591ef7b40bea9156ecfb1d315fe222b6e9957d632
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('f5c', max_pin="x") }}
 
 requirements:
   build:
diff --git a/recipes/fairease-source/build.sh b/recipes/fairease-source/build.sh
index 777614692a236..d954115446cb3 100644
--- a/recipes/fairease-source/build.sh
+++ b/recipes/fairease-source/build.sh
@@ -1,6 +1,6 @@
 #!/bin/bash -e
 
-$PYTHON -m pip install --no-deps .
+$PYTHON -m pip install --no-deps --no-build-isolation . -vvv
 
 # Copy/link executables somewhere on the path
 python_path=$(find $PREFIX -name SOURCE)
diff --git a/recipes/fairease-source/meta.yaml b/recipes/fairease-source/meta.yaml
index e1fbf1b345aff..d6ecda35e3cbe 100644
--- a/recipes/fairease-source/meta.yaml
+++ b/recipes/fairease-source/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "fairease-source" %}
-{% set version = "1.4.1" %}
+{% set version = "1.4.4" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,21 +7,23 @@ package:
 
 source:
   url: https://github.com/fair-ease/Source/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: b92fd32f80d6f894da9f130b792fddb3a6f0e1b56aca4d01baa653ed7bcbc1ff
+  sha256: 2c29f71fe34c6ea6bf45d1bf10340a5dc901bbcf4830d5f892d7bee5ad4f0178
 
 build:
   number: 0
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('fairease-source', max_pin="x") }}
 
 requirements:
   host:
-    - python
+    - python >=3.6
     - pip
   run:
     - netCDF4
     - numpy
     - pandas
-    - python
+    - python >=3.6
     - pykml
     - scipy
     - seawater
@@ -37,7 +39,7 @@ test:
     - create_probes_earth_map.py
     - duplicated_records_remover.py
     - find_variable_name.py
-    - insitu_evaluation.py          
+    - insitu_evaluation.py
     - pointwise_datasets_concatenator.py
     - ptmp_to_temp.py
     - real_time_concatenator.py
@@ -68,5 +70,4 @@ about:
   license: CC-BY-NC-4.0
   license_family: CC
   summary: "SOURCE: Sea Observations Utility for Reprocessing, Calibration and Evaluation"
-  dev_url: https://github.com/fair-ease/Source  
-
+  dev_url: https://github.com/fair-ease/Source
diff --git a/recipes/fairy/build.sh b/recipes/fairy/build.sh
new file mode 100644
index 0000000000000..3662f6efb60db
--- /dev/null
+++ b/recipes/fairy/build.sh
@@ -0,0 +1,8 @@
+#!/bin/bash -euo
+
+# Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
+# We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
+export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="$(pwd)/.cargo"
+
+# build statically linked binary with Rust
+RUST_BACKTRACE=1 cargo install --verbose --path . --root $PREFIX
diff --git a/recipes/fairy/meta.yaml b/recipes/fairy/meta.yaml
new file mode 100644
index 0000000000000..691ea5e2997ae
--- /dev/null
+++ b/recipes/fairy/meta.yaml
@@ -0,0 +1,36 @@
+{% set version = "0.5.4" %}
+
+package:
+  name: fairy
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('fairy', max_pin='x.x') }}
+
+source:
+  url: https://github.com/bluenote-1577/fairy/archive/v{{ version }}.tar.gz
+  sha256: ea76f8ea428e0413db98b7feb9becaf1ce1824ca49f62e20a7371d00ac6d89ff
+
+requirements:
+  build:
+    - {{ compiler("cxx") }}
+    - rust >=1.61
+    - make
+    - cmake >=3.12
+
+test:
+  commands:
+    - fairy --help
+
+about:
+  home: https://github.com/bluenote-1577/fairy
+  license: MIT
+  summary: fairy calculates all-to-all approximate coverage for multi-sample metagenomic binning > 100x faster than alignment. 
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - bluenote-1577
+    
diff --git a/recipes/falco/meta.yaml b/recipes/falco/meta.yaml
index 2c839a9280689..766c20816dbf0 100644
--- a/recipes/falco/meta.yaml
+++ b/recipes/falco/meta.yaml
@@ -1,15 +1,19 @@
-{% set version = "1.2.1" %}
+{% set version = "1.2.2" %}
 
 package:
   name: falco
   version: {{ version }}
 
 build:
-  number: 5
+  number: 0
+  run_exports:
+    # falco is currently not intended to be stable between minor versions (x.x).
+    - {{ pin_subpackage('falco', max_pin="x.x") }}
+
 
 source:
   url: https://github.com/smithlabcode/falco/releases/download/v{{ version }}/falco-{{ version }}.tar.gz
-  sha256: 33de8aafac45c7aea055ed7ab837d0a39d12dcf782816cea8a6c648acb911057
+  sha256: 09cfb96eb4292ba0ca48713634e9da48fbe07e57a4ae8f24f356583ed6b1028b
 
 requirements:
   build:
diff --git a/recipes/fastagap/meta.yaml b/recipes/fastagap/meta.yaml
index 82f67329fa854..c6a74612d2012 100644
--- a/recipes/fastagap/meta.yaml
+++ b/recipes/fastagap/meta.yaml
@@ -1,14 +1,16 @@
 package:
   name: fastagap
-  version: "1.0"
+  version: "1.0.1"
 
 source:
-  url: https://github.com/nylander/fastagap/archive/refs/tags/v1.0.tar.gz
-  sha256: 4873e63daf735cb6932a32fcdcfc546e5448a72ade7577cff9a059317605e955
+  url: https://github.com/nylander/fastagap/archive/refs/tags/v1.0.1.tar.gz
+  sha256: eb00b459ddb3bde4cca40ee1a3adaaa193ed089caa4e94300379f94c13004c56
 
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('fastagap', max_pin="x") }}
 
 requirements:
   run:
@@ -22,6 +24,7 @@ test:
 about:
   home: https://github.com/nylander/fastagap
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary: Count and remove missing data in fasta-formatted sequence data
 
diff --git a/recipes/fastani/build.sh b/recipes/fastani/build.sh
index 72d67bb7674dc..8008be92c6a0a 100644
--- a/recipes/fastani/build.sh
+++ b/recipes/fastani/build.sh
@@ -12,5 +12,5 @@ mkdir -p $PREFIX/bin
 ./bootstrap.sh
 ./configure --prefix=$PREFIX --with-gsl=$PREFIX
 
-make
+make -j ${CPU_COUNT}
 make install
diff --git a/recipes/fastani/meta.yaml b/recipes/fastani/meta.yaml
index 976936ec9f8b7..82c05c4c98336 100644
--- a/recipes/fastani/meta.yaml
+++ b/recipes/fastani/meta.yaml
@@ -7,11 +7,15 @@ package:
   version: {{ version }}
 
 build:
-  number: 0
+  number: 2
+  run_exports:
+    - {{ pin_subpackage('fastani', max_pin="x") }}
 
 source:
   url: https://github.com/ParBLiSS/{{ name }}/archive/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
+  patches:
+    - wrap-memcpy-only-for-linux-x86_64.patch # [linux and aarch64]
 
 requirements:
   build:
@@ -22,14 +26,15 @@ requirements:
   host:
     - zlib
     - gsl >=2.6, <2.7.1
-    - openmp
+    - libgomp  # [linux]
+    - llvm-openmp  # [osx]
     - clangdev  # [osx]
     - libcxx >=4.0  # [osx]
   run:
     - zlib
     - gsl
     - libcxx >=4.0  # [osx]
-    - openmp >=4.0  # [osx]
+    - llvm-openmp >=4.0  # [osx]
 
 test:
   commands:
@@ -41,3 +46,7 @@ about:
   license_family: Apache
   license_file: LICENSE
   summary: 'FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI).'
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/fastani/wrap-memcpy-only-for-linux-x86_64.patch b/recipes/fastani/wrap-memcpy-only-for-linux-x86_64.patch
new file mode 100644
index 0000000000000..4e0f3cd97e967
--- /dev/null
+++ b/recipes/fastani/wrap-memcpy-only-for-linux-x86_64.patch
@@ -0,0 +1,16 @@
+--- Makefile.in	2024-04-27 14:58:06.238060909 +0300
++++ Makefile.in.new	2024-04-27 14:58:01.910293221 +0300
+@@ -2,10 +2,11 @@
+ CPPFLAGS += @amcppflags@
+ 
+ UNAME_S=$(shell uname -s)
++UNAME_M=$(shell uname -m)
+ 
+ ifeq ($(UNAME_S),Darwin)  #macOS clang
+ 	CXXFLAGS += -mmacosx-version-min=10.7 -stdlib=libc++ -Xpreprocessor -fopenmp -lomp
+-else
++elif ($(UNAME_M),x86_64)
+ 	CXXFLAGS += -include src/common/memcpyLink.h -Wl,--wrap=memcpy
+ 	CFLAGS += -include src/common/memcpyLink.h
+ endif
+
diff --git a/recipes/fasten/meta.yaml b/recipes/fasten/meta.yaml
index 90ebe8adbde32..07b12a9b9b61f 100644
--- a/recipes/fasten/meta.yaml
+++ b/recipes/fasten/meta.yaml
@@ -1,12 +1,14 @@
-{% set version = "0.5.0" %}
-{% set sha256 = "4c24431ad59d4583b95b71e26584329be12632f55b9d4cca0b7ab0567276219d" %}
+{% set version = "0.8.3" %}
+{% set sha256 = "ae4d56cb81ae1e5ead734aaf3727ae595bb6c8703707f408915b992ee6ba08f1" %}
 
 package:
   name: fasten
   version: {{ version }}
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('fasten', max_pin="x.x") }}
 
 source:
   url: https://github.com/lskatz/fasten/archive/v{{ version }}.tar.gz
@@ -16,7 +18,6 @@ requirements:
   build:
     - rust
     - {{ compiler('c') }}
-  host:
 
 test:
   commands:
@@ -39,5 +40,6 @@ test:
 about:
   home: https://github.com/lskatz/fasten
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary: "Perform random operations on fastq files, using unix streaming. Secure your analysis with Fasten!"
diff --git a/recipes/fastk/meta.yaml b/recipes/fastk/meta.yaml
index f807ea6512315..74ea8e5805c91 100644
--- a/recipes/fastk/meta.yaml
+++ b/recipes/fastk/meta.yaml
@@ -1,18 +1,22 @@
 {% set name = "FASTK" %}
-{% set version = "1.0" %}
-{% set sha256 = "80d483baa74afe491ed5a9b7444c5600d66c0b35fef82d48e5129aa90fb99e17" %}
+{% set version = "1.0.0" %}
+{% set sha256 = "92f3f4633fc702f20b6d3c07c6fe10b002d746b25154e090f0115ac7d2791863" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://github.com/abueg/FASTK/archive/refs/tags/v{{ version }}.tar.gz
+  url: https://github.com/thegenemyers/FASTK/archive/refs/tags/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
+  patches:
+    - patch
 
 build:
-  number: 4
+  number: 0
   skip: true # [osx]
+  run_exports:
+    - {{ pin_subpackage("fastk", max_pin="x") }}
 
 requirements:
   build:
diff --git a/recipes/fastk/patch b/recipes/fastk/patch
new file mode 100644
index 0000000000000..ca0e157793b38
--- /dev/null
+++ b/recipes/fastk/patch
@@ -0,0 +1,262 @@
+diff --git a/HTSLIB/Makefile b/HTSLIB/Makefile
+index 45e3683..d06f51f 100755
+--- a/HTSLIB/Makefile
++++ b/HTSLIB/Makefile
+@@ -22,31 +22,34 @@
+ # FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
+ # DEALINGS IN THE SOFTWARE.
+ 
+-CC     = gcc
+-AR     = ar
+-RANLIB = ranlib
++#CC     = gcc
++#AR     = ar
++#RANLIB = ranlib
+ 
+ # Default libraries to link if configure is not used
+-htslib_default_libs = -lz -lm -lbz2 -llzma -lcurl
++#htslib_default_libs = -lz -lm -lbz2 -llzma -lcurl
+ 
+-CPPFLAGS =
++#CPPFLAGS =
+ # TODO: make the 64-bit support for VCF optional via configure, for now add -DVCF_ALLOW_INT64
+ #       to CFLAGS manually, here or in config.mk if the latter exists.
+ # TODO: probably update cram code to make it compile cleanly with -Wc++-compat
+ # For testing strict C99 support add -std=c99 -D_XOPEN_SOURCE=600
+ #CFLAGS   = -g -Wall -O2 -pedantic -std=c99 -D_XOPEN_SOURCE=600
+-CFLAGS   = -g -Wall -O2 -fvisibility=hidden
++#CFLAGS   = -g -Wall -O2 -fvisibility=hidden
+ EXTRA_CFLAGS_PIC = -fpic
+-LDFLAGS  = -fvisibility=hidden
++#LDFLAGS  = -fvisibility=hidden
+ LIBS     = $(htslib_default_libs)
+ 
+-prefix      = /usr/local
+-exec_prefix = $(prefix)
++#prefix      = /usr/local
++#exec_prefix = $(prefix)
++exec_prefix = $(PREFIX)
+ bindir      = $(exec_prefix)/bin
+-includedir  = $(prefix)/include
++#includedir  = $(prefix)/include
++includedir  = $(PREFIX)/include
+ libdir      = $(exec_prefix)/lib
+ libexecdir  = $(exec_prefix)/libexec
+-datarootdir = $(prefix)/share
++#datarootdir = $(prefix)/share
++datarootdir = $(PREFIX)/share
+ mandir      = $(datarootdir)/man
+ man1dir     = $(mandir)/man1
+ man5dir     = $(mandir)/man5
+@@ -217,10 +220,10 @@ thread_pool_internal_h = thread_pool_internal.h $(htslib_thread_pool_h)
+ config.h:
+ 	echo '/* Default config.h generated by Makefile */' > $@
+ 	echo '#define HAVE_LIBBZ2 1' >> $@
+-	echo '#define HAVE_LIBLZMA 1' >> $@
+-	echo '#ifndef __APPLE__' >> $@
+-	echo '#define HAVE_LZMA_H 1' >> $@
+-	echo '#endif' >> $@
++#	echo '#define HAVE_LIBLZMA 1' >> $@
++#	echo '#ifndef __APPLE__' >> $@
++#	echo '#define HAVE_LZMA_H 1' >> $@
++#	echo '#endif' >> $@
+ 	echo '#define HAVE_DRAND48 1' >> $@
+ 	echo '#define HAVE_LIBCURL 1' >> $@
+ 
+diff --git a/HTSLIB/config.h b/HTSLIB/config.h
+index 36a010f..6b34f6d 100644
+--- a/HTSLIB/config.h
++++ b/HTSLIB/config.h
+@@ -1,8 +1,4 @@
+ /* Default config.h generated by Makefile */
+ #define HAVE_LIBBZ2 1
+-#define HAVE_LIBLZMA 1
+-#ifndef __APPLE__
+-#define HAVE_LZMA_H 1
+-#endif
+ #define HAVE_DRAND48 1
+ #define HAVE_LIBCURL 1
+diff --git a/HTSLIB/configure.ac b/HTSLIB/configure.ac
+index a5635bc..4b1ab96 100755
+--- a/HTSLIB/configure.ac
++++ b/HTSLIB/configure.ac
+@@ -275,8 +275,8 @@ xz (via Homebrew on macOS) is installed; or build XZ Utils from source.
+ Either configure with --disable-lzma (which will make some CRAM files
+ produced elsewhere unreadable) or resolve this error to build HTSlib.])
+   fi
+-  pc_requires="$pc_requires liblzma"
+-  static_LIBS="$static_LIBS -llzma"
++  pc_requires="$pc_requires"
++  static_LIBS="$static_LIBS"
+ fi
+ 
+ AS_IF([test "x$with_libdeflate" != "xno"],
+diff --git a/HTSLIB/htslib.pc.tmp b/HTSLIB/htslib.pc.tmp
+index 6784926..12abb6e 100644
+--- a/HTSLIB/htslib.pc.tmp
++++ b/HTSLIB/htslib.pc.tmp
+@@ -4,7 +4,7 @@ libdir=@-libdir@
+ # Flags and libraries needed when linking against a static libhts.a
+ # (used by manual and semi-manual pkg-config(1)-style enquiries).
+ static_ldflags=
+-static_libs=-lz -lm -lbz2 -llzma -lcurl
++static_libs=-lz -lm -lbz2 -lcurl
+ 
+ Name: htslib
+ Description: C library for high-throughput sequencing data formats
+diff --git a/HTSLIB/htslib_static.mk b/HTSLIB/htslib_static.mk
+index e314b85..a01d4c3 100644
+--- a/HTSLIB/htslib_static.mk
++++ b/HTSLIB/htslib_static.mk
+@@ -1,2 +1,2 @@
+ HTSLIB_static_LDFLAGS = 
+-HTSLIB_static_LIBS = -lz -lm -lbz2 -llzma -lcurl
++HTSLIB_static_LIBS = -lz -lm -lbz2 -lcurl
+diff --git a/LIBDEFLATE/Makefile b/LIBDEFLATE/Makefile
+index 44fefaf..19139e8 100755
+--- a/LIBDEFLATE/Makefile
++++ b/LIBDEFLATE/Makefile
+@@ -40,21 +40,6 @@
+ cc-option = $(shell if $(CC) $(1) -c -x c /dev/null -o /dev/null \
+ 	      1>&2 2>/dev/null; then echo $(1); fi)
+ 
+-override CFLAGS :=							\
+-	-O2 -fomit-frame-pointer $(CFLAGS) -std=c99 -I. -Icommon	\
+-	-Wall -Wundef							\
+-	$(call cc-option,-Wpedantic)					\
+-	$(call cc-option,-Wdeclaration-after-statement)			\
+-	$(call cc-option,-Wmissing-prototypes)				\
+-	$(call cc-option,-Wstrict-prototypes)				\
+-	$(call cc-option,-Wvla)						\
+-	$(call cc-option,-Wimplicit-fallthrough)
+-
+-# We don't define any CPPFLAGS, but support the user specifying it.
+-
+-##############################################################################
+-
+-PREFIX ?= /usr/local
+ BINDIR ?= $(PREFIX)/bin
+ INCDIR ?= $(PREFIX)/include
+ LIBDIR ?= $(PREFIX)/lib
+@@ -76,7 +61,6 @@ ifneq ($(findstring -mingw,$(shell $(CC) -dumpmachine 2>/dev/null)),)
+     PROG_SUFFIX        := .exe
+     PROG_CFLAGS        := -static -municode
+     HARD_LINKS         :=
+-    override CFLAGS    := $(CFLAGS) $(call cc-option,-Wno-pedantic-ms-format)
+ 
+     # If AR was not already overridden, then derive it from $(CC).
+     # Note that CC may take different forms, e.g. "cc", "gcc",
+diff --git a/Makefile b/Makefile
+index 2d9c289..4785c9c 100644
+--- a/Makefile
++++ b/Makefile
+@@ -1,12 +1,21 @@
+-DEST_DIR = ~/bin
+-
+-CFLAGS = -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing
+-
+-CC = gcc
+-
+-ALL = FastK Fastrm Fastmv Fastcp Fastmerge Histex Tabex Profex Logex Vennex Symmex Haplex Homex Fastcat
+-
+-all: deflate.lib libhts.a $(ALL)
++DEST_DIR = $(PREFIX)/bin
++INSTALL = install -p
++
++PROGRAMS = FastK \
++		Fastrm \
++		Fastmv \
++		Fastcp \
++		Fastmerge \
++		Histex \
++		Tabex \
++		Profex \
++		Logex \
++		Vennex \
++		Symmex \
++		Haplex \
++		Homex
++
++all: deflate.lib libhts.a $(PROGRAMS)
+ 
+ include HTSLIB/htslib_static.mk
+ 
+@@ -14,7 +23,7 @@ deflate.lib: LIBDEFLATE
+ 	cd LIBDEFLATE; make; cd ..
+ 
+ libhts.a: HTSLIB
+-	cd HTSLIB; make libhts.a; cd ..
++	cd HTSLIB; make lib-static; cd ..
+ 
+ HTSLIB/htslib_static.mk:
+ 	cd HTSLIB; make htslib_static.mk; cd ..
+@@ -23,46 +32,46 @@ libfastk.c : gene_core.c
+ libfastk.h : gene_core.h
+ 
+ FastK: FastK.c FastK.h io.c split.c count.c table.c merge.c io.c gene_core.c gene_core.h MSDsort.c LSDsort.c libfastk.c libfastk.h
+-	$(CC) $(CFLAGS) -o FastK -I./HTSLIB $(HTSLIB_static_LDFLAGS) FastK.c io.c split.c count.c table.c merge.c MSDsort.c LSDsort.c libfastk.c LIBDEFLATE/libdeflate.a HTSLIB/libhts.a -lpthread $(HTSLIB_static_LIBS)
++	$(CC) $(CFLAGS) -o FastK -I./HTSLIB $(HTSLIB_static_LDFLAGS) FastK.c io.c split.c count.c table.c merge.c MSDsort.c LSDsort.c libfastk.c LIBDEFLATE/libdeflate.a HTSLIB/libhts.a -lpthread -lrt $(HTSLIB_static_LIBS)
+ 
+ Fastrm: Fastrm.c gene_core.c gene_core.h
+-	$(CC) $(CFLAGS) -o Fastrm Fastrm.c gene_core.c -lpthread -lm
++	$(CC) $(CFLAGS) -o Fastrm Fastrm.c gene_core.c -lpthread -lm -lrt
+ 
+ Fastmv: Fastxfer.c gene_core.c gene_core.h
+-	$(CC) $(CFLAGS) -DMOVE -o Fastmv Fastxfer.c gene_core.c -lpthread -lm
++	$(CC) $(CFLAGS) -DMOVE -o Fastmv Fastxfer.c gene_core.c -lpthread -lm -lrt
+ 
+ Fastcp: Fastxfer.c gene_core.c gene_core.h
+-	$(CC) $(CFLAGS) -UMOVE -o Fastcp Fastxfer.c gene_core.c -lpthread -lm
++	$(CC) $(CFLAGS) -UMOVE -o Fastcp Fastxfer.c gene_core.c -lpthread -lm -lrt
+ 
+ Fastmerge: Fastmerge.c libfastk.c libfastk.h
+-	$(CC) $(CFLAGS) -o Fastmerge Fastmerge.c libfastk.c -lpthread -lm
++	$(CC) $(CFLAGS) -o Fastmerge Fastmerge.c libfastk.c -lpthread -lm -lrt
+ 
+ Fastcat: Fastcat.c libfastk.c libfastk.h
+-	$(CC) $(CFLAGS) -o Fastcat Fastcat.c libfastk.c -lpthread -lm
++	$(CC) $(CFLAGS) -o Fastcat Fastcat.c libfastk.c -lpthread -lm -lrt
+ 
+ Histex: Histex.c libfastk.c libfastk.h ONElib.h ONElib.c
+-	$(CC) $(CFLAGS) -o Histex Histex.c libfastk.c ONElib.c -lpthread -lm
++	$(CC) $(CFLAGS) -o Histex Histex.c libfastk.c ONElib.c -lpthread -lm -lrt
+ 
+ Tabex: Tabex.c libfastk.c libfastk.h ONElib.h ONElib.c
+-	$(CC) $(CFLAGS) -o Tabex Tabex.c libfastk.c ONElib.c -lpthread -lm
++	$(CC) $(CFLAGS) -o Tabex Tabex.c libfastk.c ONElib.c -lpthread -lm -lrt
+ 
+ Profex: Profex.c libfastk.c libfastk.h ONElib.h ONElib.c
+-	$(CC) $(CFLAGS) -o Profex Profex.c libfastk.c ONElib.c -lpthread -lm
++	$(CC) $(CFLAGS) -o Profex Profex.c libfastk.c ONElib.c -lpthread -lm -lrt
+ 
+ Logex: Logex.c libfastk.c libfastk.h
+-	$(CC) $(CFLAGS) -o Logex Logex.c libfastk.c -lpthread -lm
++	$(CC) $(CFLAGS) -o Logex Logex.c libfastk.c -lpthread -lm -lrt
+ 
+ Vennex: Vennex.c libfastk.c libfastk.h
+-	$(CC) $(CFLAGS) -o Vennex Vennex.c libfastk.c -lpthread -lm
++	$(CC) $(CFLAGS) -o Vennex Vennex.c libfastk.c -lpthread -lm -lrt
+ 
+ Symmex: Symmex.c libfastk.c libfastk.h LSDsort.c
+-	$(CC) $(CFLAGS) -o Symmex Symmex.c libfastk.c LSDsort.c -lpthread -lm
++	$(CC) $(CFLAGS) -o Symmex Symmex.c libfastk.c LSDsort.c -lpthread -lm -lrt
+ 
+ Haplex: Haplex.c libfastk.c libfastk.h
+-	$(CC) $(CFLAGS) -o Haplex Haplex.c libfastk.c -lpthread -lm
++	$(CC) $(CFLAGS) -o Haplex Haplex.c libfastk.c -lpthread -lm -lrt
+ 
+ Homex: Homex.c libfastk.c libfastk.h
+-	$(CC) $(CFLAGS) -o Homex Homex.c libfastk.c -lpthread -lm
++	$(CC) $(CFLAGS) -o Homex Homex.c libfastk.c -lpthread -lm -lrt
+ 
+ 
+ tidyup:
+@@ -78,7 +87,7 @@ clean:
+ 	rm -f FastK.tar.gz
+ 
+ install:
+-	cp $(ALL) $(DEST_DIR)
++	$(INSTALL) $(PROGRAMS) $(DEST_DIR)
+ 
+ package:
+ 	make clean
diff --git a/recipes/fastlin/meta.yaml b/recipes/fastlin/meta.yaml
index 98070f5a6218e..48e37b8638cb2 100644
--- a/recipes/fastlin/meta.yaml
+++ b/recipes/fastlin/meta.yaml
@@ -1,17 +1,19 @@
 {% set name = "fastlin" %}
-{% set version = "0.2.1" %}
+{% set version = "0.2.3" %}
 
 package:
   name: {{ name|lower}}
   version: {{ version }}
 
 source:
-  url: https://github.com/rderelle/fastlin/archive/v{{ version }}.tar.gz
-  sha256: 765820a4c68018a4c8caab76b522eff6a6dca80111721acc38a75840dc94a51b
+  url: https://github.com/rderelle/fastlin/archive/{{ version }}.tar.gz
+  sha256: 07c427740b520756d25e435e784e3b3d1cca0d08bcce07c5e213a35c4694ccaf
 
 build:
   number: 0
   script: "cargo install --no-track --locked --verbose --root \"${PREFIX}\" --path ."
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   build:
@@ -24,5 +26,6 @@ test:
 about:
    home: https://github.com/rderelle/fastlin
    license: MIT
+   license_family: MIT
    license_file: LICENSE
    summary: fastlin, ultra-fast MTBC lineage typing
diff --git a/recipes/fastmlst/meta.yaml b/recipes/fastmlst/meta.yaml
index 22c34e311471d..e2d2bc9e5699b 100644
--- a/recipes/fastmlst/meta.yaml
+++ b/recipes/fastmlst/meta.yaml
@@ -1,7 +1,7 @@
 {% set name = "FastMLST" %}
-{% set version = "0.0.15" %}
+{% set version = "0.0.16" %}
 {% set user = "EnzoAndree" %}
-{% set sha256 = "5501a2785852c2551c3ba1835b83350eb5f7de10cd4e56bfb411bbdb6a23fc33" %}
+{% set sha256 = "3a2f45079f085481f381047c2b56e40fd47f2ae3a80a7add0642fa41dd068b61" %}
 
 package:
   name: "{{ name|lower }}"
@@ -10,7 +10,9 @@ package:
 build:
   noarch: python
   number: 0
-  script: "{{ PYTHON }} -m pip install . --no-deps -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('fastmlst', max_pin="x") }}
 
 source:
   url: https://github.com/{{ user }}/{{ name }}/archive/v{{ version }}.tar.gz
diff --git a/recipes/fastobo/build.sh b/recipes/fastobo/build.sh
index 9c8d67584dbb7..fa59a1bd38ab5 100644
--- a/recipes/fastobo/build.sh
+++ b/recipes/fastobo/build.sh
@@ -19,7 +19,7 @@ sh rustup.sh -y --default-toolchain nightly
 export PATH="$CARGO_HOME/bin:$PATH"
 
 # build statically linked binary with Rust
-RUSTFLAGS="-C linker=$CC" C_INCLUDE_PATH=$PREFIX/include LIBRARY_PATH=$PREFIX/lib $PYTHON -m pip install . --no-deps --ignore-installed -vv
+RUSTFLAGS="-C linker=$CC" C_INCLUDE_PATH=$PREFIX/include LIBRARY_PATH=$PREFIX/lib $PYTHON -m pip install . --no-deps --no-build-isolation -vvv
 
 # remove rustup and cargo
 rm -rf "$RUSTUP_HOME"
diff --git a/recipes/fastobo/meta.yaml b/recipes/fastobo/meta.yaml
index 917836b262f84..9824889f7574e 100644
--- a/recipes/fastobo/meta.yaml
+++ b/recipes/fastobo/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "fastobo" %}
-{% set version = "0.12.2" %}
+{% set version = "0.12.3" %}
 
 package:
   name: "{{ name | lower }}"
@@ -7,28 +7,33 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: "2f2779f70ac54874329dddc74cabd86fea88abe56c544c2238076c1d27fe045e"
+  sha256: "f375932a24b078706797eb9296740f2d2e6987a34309bda7c9f235aba1d74217"
 
 build:
-  number: 2
+  number: 1
   skip: True  # [osx or py27 or py36]
+  run_exports:
+    - {{ pin_subpackage('fastobo', max_pin="x.x") }}
 
 requirements:
   build:
     - wget
     - {{ compiler('c') }}  # [not osx]
     - {{ compiler('cxx') }}  # [not osx]
-    - clang_osx-64 # [osx]
-    - clangxx_osx-64 # [osx]
+    - clang_osx-64  # [osx]
+    - clangxx_osx-64  # [osx]
     - pkg-config  # [osx]
+    - sysroot_linux-64 =2.17 # [linux and x86_64]
   host:
     - pip
     - setuptools-rust
     - python
-    - libiconv #[osx]
+    - libiconv  # [osx]
+    - sysroot_linux-64 =2.17 # [linux and x86_64]
   run:
     - python
-    - libiconv #[osx]
+    - libiconv  # [osx]
+    - sysroot_linux-64 =2.17 # [linux and x86_64]
 
 test:
   imports:
@@ -43,6 +48,8 @@ about:
   doc_url: "https://fastobo.readthedocs.io"
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   recipe-maintainers:
     - althonos
   identifiers:
diff --git a/recipes/fastp/meta.yaml b/recipes/fastp/meta.yaml
index 69d01a796d934..5ab71115f3ff3 100644
--- a/recipes/fastp/meta.yaml
+++ b/recipes/fastp/meta.yaml
@@ -9,7 +9,9 @@ source:
   sha256: 4fad6db156e769d46071add8a778a13a5cb5186bc1e1a5f9b1ffd499d84d72b5
 
 build:
-  number: 2
+  number: 3
+  run_exports:
+    - {{ pin_subpackage("fastp", max_pin="x.x") }}
 
 requirements:
   build:
@@ -27,6 +29,10 @@ test:
   commands:
     - fastp --help
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+
 about:
   home: https://github.com/OpenGene/fastp
   license: MIT
diff --git a/recipes/fastq-dl/meta.yaml b/recipes/fastq-dl/meta.yaml
index 4718ea015894c..0f276e73c516e 100644
--- a/recipes/fastq-dl/meta.yaml
+++ b/recipes/fastq-dl/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "2.0.2" %}
+{% set version = "2.0.4" %}
 
 package:
   name: fastq-dl
@@ -6,7 +6,7 @@ package:
 
 source:
   url: https://pypi.io/packages/source/f/fastq_dl/fastq_dl-{{ version }}.tar.gz
-  sha256: 6b343486d7b8412064dc99f6dc67c86d7ab84acd2f4ba3d7bf8c1adbdea16e2e
+  sha256: 201a75f7e7b08d1eb56c625c98f92ad39e9e683e1921bb60a24a38a158a2daa8
 
 build:
   number: 0
diff --git a/recipes/fastq-scan/meta.yaml b/recipes/fastq-scan/meta.yaml
index ecec567b57cf1..5a1e652f87b45 100644
--- a/recipes/fastq-scan/meta.yaml
+++ b/recipes/fastq-scan/meta.yaml
@@ -11,7 +11,9 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 2
+  number: 3
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
 
 requirements:
   build:
@@ -30,3 +32,7 @@ about:
   license: MIT
   license_file: LICENSE
   summary: FASTQ summary statistics in JSON format
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/fastq/meta.yaml b/recipes/fastq/meta.yaml
index 4201b44ec8ee4..936ef2639cd24 100644
--- a/recipes/fastq/meta.yaml
+++ b/recipes/fastq/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "fastq" %}
-{% set version = "2.0.2" %}
+{% set version = "2.0.4" %}
 
 package:
   name: {{ name }}
@@ -7,33 +7,31 @@ package:
 
 source:
   url: https://github.com/not-a-feature/fastq/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 855f2347f3a566fde44ba1d91d033dc0de9e0c1ce72dfe7085c6f92f7eeb7cd4
+  sha256: 677a5d2eb2b70d0d90da7bf9c52fabd327e5522cb7a7004a011940a3014c0562
 
 build:
   noarch: python
   number: 0
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --use-pep517 -vvv"
+  run_exports:
+    - {{ pin_subpackage('fastq', max_pin="x") }}
 
 requirements:
   host:
-    - python >=3.7
+    - python >=3.8
     - pip
   run:
-    - python >=3.7
-    - miniFasta >=2.1
+    - python >=3.8
+    - miniFasta >=3.0.1
 
 test:
   imports:
     - fastq
-  commands:
-    - pip check
-  requires:
-    - pip
 
 about:
   home: https://github.com/not-a-feature/fastq
   license: GPL-3.0-or-later
-  license_family: GPL
+  license_family: GPL3
   license_file: LICENSE
   summary: 'A simple FASTQ toolbox for small to medium size projects without dependencies.'
   description: |
diff --git a/recipes/fasttree/meta.yaml b/recipes/fasttree/meta.yaml
index 1051a9da464c4..a91720bc56fc7 100644
--- a/recipes/fasttree/meta.yaml
+++ b/recipes/fasttree/meta.yaml
@@ -10,7 +10,9 @@ source:
   sha256: "9026ae550307374be92913d3098f8d44187d30bea07902b9dcbfb123eaa2050f"
 
 build:
-  number: 2
+  number: 3
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x") }}
 
 requirements:
   build:
@@ -33,6 +35,8 @@ about:
   summary: "FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences"
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:fasttree
     - doi:10.1093/molbev/msp077
diff --git a/recipes/fastv/meta.yaml b/recipes/fastv/meta.yaml
index bc5bcffdd2b75..b7e927e3e3c51 100644
--- a/recipes/fastv/meta.yaml
+++ b/recipes/fastv/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.8.1" %}
-{% set sha256 = "210d098c6169393fc44c3fe13db34221cdcb2f3f5d71685fc0f88eb96ee1b406" %}
+{% set version = "0.10.0" %}
+{% set sha256 = "06acd1b57f1d3df0dbd344f7b47506b7a0b667481a36263a6ebbe3710f3d361f" %}
 
 package:
   name: fastv
@@ -10,7 +10,9 @@ source:
   sha256: '{{ sha256 }}'
 
 build:
-  number: 4
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('fastv', max_pin="x") }}
 
 requirements:
   build:
@@ -28,4 +30,4 @@ about:
   license: MIT
   license_family: MIT
   license_file: LICENSE
-  summary: An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. 
+  summary: An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data.
diff --git a/recipes/favites_lite/build.sh b/recipes/favites_lite/build.sh
new file mode 100644
index 0000000000000..b6efe41d72ed0
--- /dev/null
+++ b/recipes/favites_lite/build.sh
@@ -0,0 +1,5 @@
+#!/bin/bash
+
+mkdir -p ${PREFIX}/bin/FAVITES-Lite
+cp -r * ${PREFIX}/bin/FAVITES-Lite/
+ln -s ${PREFIX}/bin/FAVITES-Lite/favites_lite.py ${PREFIX}/bin/favites_lite.py
diff --git a/recipes/favites_lite/meta.yaml b/recipes/favites_lite/meta.yaml
new file mode 100644
index 0000000000000..7cf5f715e0365
--- /dev/null
+++ b/recipes/favites_lite/meta.yaml
@@ -0,0 +1,41 @@
+{% set version = "1.0.3" %}
+
+package:
+  name: favites_lite
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('favites_lite', max_pin="x.x.x") }}
+  noarch: generic
+
+source:
+  url: https://github.com/niemasd/FAVITES-Lite/archive/refs/tags/{{ version }}.tar.gz
+  sha256: da2d03bb450a748f779b348776aad889ce4839ecead1a82f0a2ea99c5430d578
+
+requirements:
+  run:
+    - python >=3.7
+    - numpy
+    - scipy
+    - treesap
+    - treeswift
+    - coatran
+    - gemf_favites
+    - niemagraphgen
+    - seq-gen
+
+about:
+  home: https://github.com/niemasd/FAVITES-Lite
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE
+  summary: "FAVITES-Lite: A lightweight framework for viral transmission and evolution simulation"
+  dev_url: https://github.com/niemasd/FAVITES-Lite
+
+test:
+  commands:
+    - favites_lite.py -h
+  identifiers:
+    - doi:10.1093/bioinformatics/bty921
diff --git a/recipes/fcsparser/meta.yaml b/recipes/fcsparser/meta.yaml
index deff968ec06ce..98ca491275e3f 100644
--- a/recipes/fcsparser/meta.yaml
+++ b/recipes/fcsparser/meta.yaml
@@ -1,27 +1,31 @@
+{% set name = "fcsparser" %}
+{% set version = "0.2.8" %}
+{% set sha256 = "df0436bf678df1f4ad3274e55fa06773f884fa45d8329015913a6178d10c73ea" %}
+
 package:
-  name: fcsparser
-  version: "0.2.6"
+  name: {{ name|lower }}
+  version: {{ version }}
 
 source:
-  url: https://files.pythonhosted.org/packages/5b/8c/761028f493605b95dd7fc33c9b10300720ef592eae1aee2650945436d5dd/fcsparser-0.2.6.tar.gz
-  sha256: 426e53694ce7b2e9ed050b0c5a52a971d574b251df9ff006c42e3360ffc94f8b
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/fcsparser-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
 
 build:
   number: 0
   noarch: python
-  preserve_egg_dir: False
+  script: {{ PYTHON }} -m pip install . --no-deps -vvv
+  run_exports:
+    - {{ pin_subpackage("fcsparser", max_pin="x.x") }}
 
 requirements:
   host:
-    - python
-    - setuptools
-    - numpy
-    - pandas
-
+    - python >=3.8
+    - poetry-core
+    - pip
   run:
-    - python
-    - numpy
+    - python >=3.8
     - pandas
+    - numpy
 
 test:
   imports:
@@ -30,6 +34,7 @@ test:
 
 about:
   home: https://github.com/eyurtsev/fcsparser
-  license: MIT
   summary: 'A python package for reading raw fcs files'
+  license: MIT
   license_family: MIT
+  license_file: LICENSE
diff --git a/recipes/ffq/meta.yaml b/recipes/ffq/meta.yaml
index 01085e234028f..f1b17c86690cf 100644
--- a/recipes/ffq/meta.yaml
+++ b/recipes/ffq/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "ffq" %}
-{% set version = "0.3.0" %}
+{% set version = "0.3.1" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: https://pypi.io/packages/source/f/ffq/ffq-{{ version }}.tar.gz
-  sha256: 247b1da25090519708e3811f849a612c56cdb41eda7845000490992d0a1d98b6
+  sha256: 02a82b1130fa1d50558b8e3b9663cc2db1ad95498a7345783e69517f6391884b
 
 build:
   number: 0
@@ -15,6 +15,8 @@ build:
     - ffq=ffq.main:main
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('ffq', max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/fgbio-minimal/meta.yaml b/recipes/fgbio-minimal/meta.yaml
index e4961234d0447..23242dc27e036 100644
--- a/recipes/fgbio-minimal/meta.yaml
+++ b/recipes/fgbio-minimal/meta.yaml
@@ -1,4 +1,4 @@
-{% set version="2.1.0" %}
+{% set version = "2.2.1" %}
 
 package:
   name: fgbio-minimal
@@ -6,11 +6,13 @@ package:
 
 source:
   url: https://github.com/fulcrumgenomics/fgbio/releases/download/{{ version }}/fgbio-{{ version }}.jar
-  sha256: 7a07d86b1263a89375c5796fec51ecc4bf31b3850ec205df8ae8c9ccba7ca314
+  sha256: bb875e9a9218b841f39bdd007492b56be25b4d112ef7c22311c554b7b60fcd2c
 
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('fgbio-minimal', max_pin="x") }}
 
 requirements:
   run:
@@ -25,6 +27,7 @@ test:
 about:
   home: https://github.com/fulcrumgenomics/fgbio
   license: MIT
+  license_family: MIT
   summary: A set of tools for working with genomic and high throughput sequencing data, including UMIs
   description: A set of tools for working with genomic and high throughput sequencing data, including UMIs.
     The 'fgbio-minimal' package offers an installation of fgbio without the 'r-base' dependency.
diff --git a/recipes/fgbio/meta.yaml b/recipes/fgbio/meta.yaml
index 1478e00d13907..ee2047de82028 100644
--- a/recipes/fgbio/meta.yaml
+++ b/recipes/fgbio/meta.yaml
@@ -1,4 +1,4 @@
-{% set version="2.1.0" %}
+{% set version = "2.2.1" %}
 
 package:
   name: fgbio
@@ -6,11 +6,13 @@ package:
 
 source:
   url: https://github.com/fulcrumgenomics/fgbio/releases/download/{{ version }}/fgbio-{{ version }}.jar
-  sha256: 7a07d86b1263a89375c5796fec51ecc4bf31b3850ec205df8ae8c9ccba7ca314
+  sha256: bb875e9a9218b841f39bdd007492b56be25b4d112ef7c22311c554b7b60fcd2c
 
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('fgbio', max_pin="x") }}
 
 requirements:
   run:
@@ -28,4 +30,5 @@ test:
 about:
   home: https://github.com/fulcrumgenomics/fgbio
   license: MIT
+  license_family: MIT
   summary: A set of tools for working with genomic and high throughput sequencing data, including UMIs
diff --git a/recipes/fgpyo/meta.yaml b/recipes/fgpyo/meta.yaml
index 824f7ca5bbad7..724cfe8711b77 100644
--- a/recipes/fgpyo/meta.yaml
+++ b/recipes/fgpyo/meta.yaml
@@ -1,6 +1,5 @@
 {% set name = "fgpyo" %}
-{% set version = "0.0.8" %}
-
+{% set version = "0.3.0" %}
 
 package:
   name: {{ name|lower }}
@@ -8,24 +7,29 @@ package:
 
 source:
   url: https://github.com/fulcrumgenomics/{{ name }}/archive/refs/tags/{{ version }}.tar.gz
-  sha256: 6726f6a7589dabbd632e38c08b057ce7efa937724df8c08e49c601f012162725
+  sha256: 787506e574166c9b2cec80f722db7caa2851d24b787cdd665fae1d42f8a9c9e0
 
 build:
   noarch: python
   number: 0
-  script: {{ PYTHON }} -m pip install . -vv --no-deps
+  script: {{ PYTHON }} -m pip install . -vvv --no-build-isolation --no-deps
+  run_exports:
+    - {{ pin_subpackage('fgpyo', max_pin="x.x") }}
 
 requirements:
   host:
     - pip
-    - python >=3.7
+    - python >=3.8
     - poetry
   run:
-    - python >=3.7
-    - typing_extensions >=3.7.4 #[py<38]
-    - typing_inspect >=0.3.1 #[py<38]
+    - python >=3.8
+    - typing_extensions >=3.7.4  # [py > 311]
     - attrs >=19.3.0
-    - pysam >=0.20.0
+    - pysam >=0.22.0
+    - pytest >=7.4.0
+  run_constrained:
+    - sphinx 4.3.1
+    - sphinx_rtd_theme >=1.3.0,<2.0.0
 
 test:
   imports:
@@ -35,7 +39,10 @@ about:
   home: https://pypi.org/project/fgpyo/
   summary: Python bioinformatics and genomics library
   license: MIT
+  license_family: MIT
   license_file: LICENSE
+  dev_url: https://github.com/fulcrumgenomics/fgpyo
+  doc_url: https://fgpyo.readthedocs.io/en/latest/
 
 extra:
   recipe-maintainers:
diff --git a/recipes/fgsv/meta.yaml b/recipes/fgsv/meta.yaml
index 01fea8b99f1ee..4d064dba5f553 100644
--- a/recipes/fgsv/meta.yaml
+++ b/recipes/fgsv/meta.yaml
@@ -1,4 +1,6 @@
-{% set version="0.0.2" %}
+{% set version="0.2.0" %}
+{% set sha256="c2f9536a677e7e99f251cada1338f611cea40477deca144f0c6928505755eb37" %}
+
 
 package:
   name: fgsv
@@ -6,11 +8,14 @@ package:
 
 source:
   url: https://github.com/fulcrumgenomics/fgsv/releases/download/{{ version }}/fgsv-{{ version }}.jar
-  sha256: f75c7f8dee195b7b6d7436aa88970aaf1717c8443c9d1e6a312429505e0fec0e
+  sha256: {{ sha256 }}
 
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage("fgsv", max_pin="x.x") }}
+  
 
 requirements:
   run:
@@ -30,3 +35,4 @@ about:
 extra:
   recipe-maintainers:
     - nh13
+    - tfenne
diff --git a/recipes/fibertools-rs/build.sh b/recipes/fibertools-rs/build.sh
index 1d66b9cf26634..e5418801f8fdf 100644
--- a/recipes/fibertools-rs/build.sh
+++ b/recipes/fibertools-rs/build.sh
@@ -1,5 +1,4 @@
 #!/bin/bash -e
-
 #
 # Set the desitnation for the libtorch files
 #
@@ -17,6 +16,10 @@ export DYLD_LIBRARY_PATH=${DYLD_LIBRARY_PATH}:${LIBTORCH}/lib
 #
 # download pytorch libraries
 #
+# unfortunetally newish size limits on bioconda packages prevent me from including this.
+# keeping this code block here in case the size limits change, or bioconda/conda-forge allow the pytorch channel to be accessed. 
+if [[ "x" == "y" ]]; then 
+
 export TORCH_VERSION="2.0.1"
 export INSTALL_TYPE="cu118" # "cu117" or "cu118" or "cpu"
 export INSTALL_TYPE="cpu"
@@ -41,6 +44,8 @@ rm libtorch.zip
 # patchelf --set-soname $SONAME $F
 popd
 
+echo "Done downloading libtorch" 1>&2
+
 #
 # move libtorch to OUTDIR
 #
@@ -53,6 +58,8 @@ else
     mv ${PREFIX}/libtorch/share/* ${OUTDIR}/share/.
 fi
 
+echo "Done setting up libtorch" 1>&2
+
 #
 # fix conflict with libgomp
 #
@@ -65,6 +72,8 @@ if [[ ${target_platform} =~ linux.* ]]; then
     echo "Using the included libgomp"
 fi
 
+fi
+
 #
 # TODO: Remove the following export when pinning is updated and we use
 #       {{ compiler('rust') }} in the recipe.
@@ -78,10 +87,13 @@ export BINDGEN_EXTRA_CLANG_ARGS="${CFLAGS} ${CPPFLAGS} ${LDFLAGS}"
 #
 HOME=$(pwd)
 pushd ${PREFIX}
-cargo install --all-features --no-track --verbose \
+# --all-features 
+cargo install --no-track --verbose \
     --root "${PREFIX}" --path "${HOME}"
 popd
 
+echo "Done building ft" 1>&2
+
 #
 # clean up the include files since they are not needed and there is a lot of them ~8,000
 #
@@ -96,30 +108,6 @@ fi
 #
 ft --help
 
-#
-# try patchelf
-#
-if [[ ${target_platform} =~ linux.* ]]; then
-    ldd "$(which ft)"
-    patchelf --print-needed $(which ft)
-    #for OLD in ${PREFIX}/lib/libgomp.so*; do
-    #    NEW=${OUTDIR}/lib/libgomp-a34b3233.so.1
-    #    patchelf --debug --replace-needed $OLD $NEW ${PREFIX}/bin/ft
-    #    patchelf --debug --replace-needed $(basename $OLD) $NEW ${PREFIX}/bin/ft
-    #done
-    #echo "after patchelf"
-    #patchelf --print-needed $(which ft)
-    #OLD=${OUTDIR}/lib/libtorch_cpu.so
-    #NEW=${OUTDIR}/lib/libmine.so.1
-    #mv $OLD $NEW
-    #patchelf --replace-needed $OLD $NEW ${PREFIX}/bin/ft
-    #patchelf --replace-needed $(basename $OLD) $NEW ${PREFIX}/bin/ft
-    #patchelf --set-rpath \$ORIGIN/../lib ${PREFIX}/bin/ft
-    #ft --help
-    #ldd "$(which ft)"
-    #patchelf --print-needed $(which ft)
-fi
-
 #
 # test install on data
 #
diff --git a/recipes/fibertools-rs/meta.yaml b/recipes/fibertools-rs/meta.yaml
index c0eebb4837cae..589520189e587 100644
--- a/recipes/fibertools-rs/meta.yaml
+++ b/recipes/fibertools-rs/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.3.0" %}
+{% set version = "0.4.2" %}
 {% set name = "fibertools-rs" %}
 {% set build_number = "0" %}
 
@@ -6,26 +6,26 @@ package:
   name: {{ name }}
   version: {{ version }}
 
+  
+source:  
+  url: https://github.com/fiberseq/fibertools-rs/archive/v{{ version }}.tar.gz
+  sha256: 8d73b8160d93731435afbccad3f8f8ea33c291383783303e2f88a98815cc3425
+
+
 build:
+  run_exports:
+    - {{ pin_subpackage('fibertools-rs', max_pin="x") }}
   number: {{ build_number }}
-  detect_binary_files_with_prefix: False
-  # skip: True # [osx]
   rpaths:
     - lib/
     - share/{{ name }}-{{ version }}-{{ build_number }}/lib/
-  missing_dso_whitelist:
-    - share/{{ name }}-{{ version }}-{{ build_number }}/lib/*
-    - "$RPATH/libgomp-a34b3233.so.1"
-    - "$RPATH/libcudart-d0da41ae.so.11.0"
-  #runpath_whitelist:
+  #detect_binary_files_with_prefix: False
+  #missing_dso_whitelist:
   #  - share/{{ name }}-{{ version }}-{{ build_number }}/lib/*
-  # overlinking_ignore_patterns:
-  #   - share/{{ name }}-{{ version }}-{{ build_number }}/lib/*
-  
+  #  - "$RPATH/libgomp-a34b3233.so.1"
+  #  - "$RPATH/libcudart-d0da41ae.so.11.0"
+  # skip: True # [osx]
 
-source:
-  url: https://github.com/fiberseq/fibertools-rs/archive/v{{ version }}.tar.gz
-  sha256: e4f895b74f5e57ed2d70e743879d62f38cbec12f337df0eb96e0f5b4070e0947
 
 requirements:
   build:
@@ -36,12 +36,21 @@ requirements:
     - cmake
     - unzip
     - curl
+  # all the host and run requirements match those needed for htslib
   host:
+    - libcurl
+    - bzip2
+    - xz
+    - zlib
+    - libdeflate
+    - openssl  # [not osx]
   run:
-
-# libz
-# $RPATH/libcuda.so.1
-# Needed DSO lib/libgomp.so.1 
+    - libcurl
+    - bzip2
+    - xz
+    - zlib
+    - libdeflate
+    - openssl  # [not osx]
 
 test:
   commands:
@@ -57,3 +66,4 @@ about:
 extra:
   recipe-maintainers:
     - mrvollger
+  
diff --git a/recipes/fiji-max_inscribed_circles/meta.yaml b/recipes/fiji-max_inscribed_circles/meta.yaml
index 1548b969795c3..7e55a6d863130 100644
--- a/recipes/fiji-max_inscribed_circles/meta.yaml
+++ b/recipes/fiji-max_inscribed_circles/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "fiji-max_inscribed_circles" %}
-{% set version = "2.0.0" %}
+{% set version = "2.1.0" %}
  
 package:
   name: {{ name | lower }}
@@ -7,11 +7,13 @@ package:
 
 source:
   url: https://maven.scijava.org/service/local/repositories/releases/content/ch/epfl/biop/MaxInscribedCircles/{{ version }}/MaxInscribedCircles-{{ version }}.jar
-  sha256: de0fe5e71d493a45aff07d9c636172d83b2ace0600ffaa24ba8f8072825fdfa7
+  sha256: 59346b24ed4d17570701cdb190d55e4862030720287379e194fd4db90fac3692
 
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage ("fiji-max_inscribed_circles", max_pin="x") }}
 
 requirements:
   run:
@@ -34,4 +36,4 @@ about:
     from the largest to the smallest.
     The code is written for Java 8,
     which is the currently supported Java version for Fiji and ImageJ.
-  dev_url: https://github.com/BIOP/ijp-max-inscribed-circles
\ No newline at end of file
+  dev_url: https://github.com/BIOP/ijp-max-inscribed-circles
diff --git a/recipes/fiji-morpholibj/meta.yaml b/recipes/fiji-morpholibj/meta.yaml
index ca549e2629e2c..349e228f08be3 100644
--- a/recipes/fiji-morpholibj/meta.yaml
+++ b/recipes/fiji-morpholibj/meta.yaml
@@ -1,17 +1,19 @@
 {% set name = "fiji-morpholibj" %}
-{% set version = "1.5.1" %}
- 
+{% set version = "1.6.1" %}
+
 package:
   name: {{ name | lower }}
   version: {{ version }}
 
 source:
   url: https://github.com/ijpb/MorphoLibJ/releases/download/v{{ version }}/MorphoLibJ_-{{ version }}.jar
-  sha256: fd6e010fb94b49d1b12786274deae4e6be57fb5a0113f36c2cf7d14dbeb6b4e6
+  sha256: e6b3b3ee1355a0286d6fb09d8059ef49475d3cbad6a735037e0edd47d9d1d97d
 
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('fiji-morpholibj', max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/fiji-omero_ij/meta.yaml b/recipes/fiji-omero_ij/meta.yaml
index 0f0a21f00394e..5899814ca4d33 100644
--- a/recipes/fiji-omero_ij/meta.yaml
+++ b/recipes/fiji-omero_ij/meta.yaml
@@ -1,17 +1,19 @@
 {% set name = "fiji-omero_ij" %}
-{% set version = "5.8.0" %}
- 
+{% set version = "5.8.4" %}
+
 package:
   name: {{ name | lower }}
   version: {{ version }}
 
 source:
   url: https://github.com/ome/omero-insight/releases/download/v{{ version }}/omero_ij-{{ version }}-all.jar
-  sha256: 8d86d67503a8a39792c9e191fa0bdcc653db5bcdf53570f7b0cca88e79bfd71a
+  sha256: 14020e96fd8908907bf6f9747085452d6068b25a1df62546037ba0a3a876aa92
 
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('fiji-omero_ij', max_pin="x") }}
 
 requirements:
   run:
@@ -28,4 +30,4 @@ about:
   summary: ImageJ / Fiji plugin to visualize and manipulate both image data and metadata maintained at an OMERO server site.
   description: |
     The OMERO.insight Project is a sub-project of the Open Microscopy Environment Project, OME that focuses on delivering a client for the visualization and manipulation of both image data and metadata maintained at an OMERO server site.
-  dev_url: https://github.com/ome/omero-insight
\ No newline at end of file
+  dev_url: https://github.com/ome/omero-insight
diff --git a/recipes/fiji-simple_omero_client/meta.yaml b/recipes/fiji-simple_omero_client/meta.yaml
index d6c0081da722f..98f1a97ecd7cd 100644
--- a/recipes/fiji-simple_omero_client/meta.yaml
+++ b/recipes/fiji-simple_omero_client/meta.yaml
@@ -1,17 +1,19 @@
 {% set name = "fiji-simple_omero_client" %}
-{% set version = "5.12.2" %}
- 
+{% set version = "5.18.0" %}
+
 package:
   name: {{ name | lower }}
   version: {{ version }}
 
 source:
   url: https://github.com/GReD-Clermont/simple-omero-client/releases/download/{{ version }}/simple-omero-client-{{ version }}.jar
-  sha256: 246a006152ae51ff6eb5f0a62567083fe589c1f45413a4ed4e463d31604fcbea
+  sha256: 0b70886437e9cf6c2ab1096d6e711c7319b45bac6784ab4aac5fb8ef98e64e61
 
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('fiji-simple_omero_client', max_pin="x") }}
 
 requirements:
   run:
@@ -29,4 +31,4 @@ about:
   summary: Java library to simplify API to put/get objects on an OMERO server from Fiji/ImageJ.
   description: |
     This library presents a simplified API to put/get objects on an OMERO server.
-  dev_url: https://github.com/GReD-Clermont/simple-omero-client
\ No newline at end of file
+  dev_url: https://github.com/GReD-Clermont/simple-omero-client
diff --git a/recipes/fiji/bunwarpj.sh b/recipes/fiji/bunwarpj.sh
index b4a6a1b1adcf1..f595cfc165b1e 100644
--- a/recipes/fiji/bunwarpj.sh
+++ b/recipes/fiji/bunwarpj.sh
@@ -52,6 +52,6 @@ if [ "$jvm_mem_opts" == "" ]; then
     jvm_mem_opts="$default_jvm_mem_opts"
 fi
 
-eval "$java" $jvm_mem_opts $jvm_prop_opts -cp "$JAR_DIR/ij-1.53q.jar:$PLUGINS_DIR/bUnwarpJ_-2.6.13.jar" "$bUnwarpJ" $pass_args
+eval "$java" $jvm_mem_opts $jvm_prop_opts -cp "$JAR_DIR/ij-1.54f.jar:$PLUGINS_DIR/bUnwarpJ_-2.6.13.jar" "$bUnwarpJ" $pass_args
 
 exit
diff --git a/recipes/fiji/meta.yaml b/recipes/fiji/meta.yaml
index 29dabfb6eec60..055f596ba2279 100644
--- a/recipes/fiji/meta.yaml
+++ b/recipes/fiji/meta.yaml
@@ -1,15 +1,17 @@
 package:
   name: fiji
-  version: 20220414
+  version: 20231211
 
 source:
-  -   url: https://downloads.imagej.net/fiji/archive/20220414-1745/fiji-linux64.zip  # [linux]
-      md5: 6e34f59fd28978f59875b22b838c7b98  # [linux]
-  -   url: https://downloads.imagej.net/fiji/archive/20220414-1745/fiji-macosx.zip  # [osx]
-      md5: b2b5975e9a105302cebea88f2f96fd2c  # [osx]
+  -   url: https://downloads.imagej.net/fiji/archive/20231211-1317/fiji-linux64.zip  # [linux]
+      md5: 9292db721a289c13de35dbb882a84c2a  # [linux]
+  -   url: https://downloads.imagej.net/fiji/archive/20231211-1317/fiji-macosx.zip  # [osx]
+      md5: 46959cc6a43b7ace2981a9a4a3486e4c  # [osx]
 
 build:
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("fiji", max_pin=None) }}
 
 requirements:
   host:
diff --git a/recipes/finestructure/LICENSE-FS b/recipes/finestructure/LICENSE-FS
index eccdaa63e37ff..20c9043d754e1 100644
--- a/recipes/finestructure/LICENSE-FS
+++ b/recipes/finestructure/LICENSE-FS
@@ -1,12 +1,12 @@
-Finestructure v2.1, (c) 2016, The University of Bristol (the "Software") 
- 
-The Software remains the property of the University of Bristol ("the University"). 
+Finestructure v4.0, (c) 2019, The University of Bristol (the "Software")
 
-The Software is distributed "AS IS" under this Licence solely for non-commercial use in the hope that it will be useful, but in order that the University as a charitable foundation protects its assets for the benefit of its educational and research purposes, the University makes clear that no condition is made or to be implied, nor is any warranty given or to be implied, as to the accuracy of the Software, or that it will be suitable for any particular purpose or for use under any specific conditions. Furthermore, the University disclaims all responsibility for the use which is made of the Software. It further disclaims any liability for the outcomes arising from using the Software. 
+The Software remains the property of the University of Bristol ("the University").
 
-The Licensee agrees to indemnify the University and hold the University harmless from and against any and all claims, damages and liabilities asserted by third parties (including claims for negligence) which arise directly or indirectly from the use of the Software or the sale of any products based on the Software. 
- 
-No part of the Software may be reproduced, modified, transmitted or transferred in any form or by any means, electronic or mechanical, without the express permission of the University. The permission of the University is not required if the said reproduction, modification, transmission or transference is done without financial return, the conditions of this Licence are imposed upon the receiver of the product, and all original and amended source code is included in any transmitted product. You may be held legally responsible for any copyright infringement that is caused or encouraged by your failure to abide by these terms and conditions.  
+The Software is distributed "AS IS" under this Licence solely for non-commercial use in the hope that it will be useful, but in order that the University as a charitable foundation protects its assets for the benefit of its educational and research purposes, the University makes clear that no condition is made or to be implied, nor is any warranty given or to be implied, as to the accuracy of the Software, or that it will be suitable for any particular purpose or for use under any specific conditions. Furthermore, the University disclaims all responsibility for the use which is made of the Software. It further disclaims any liability for the outcomes arising from using the Software.
+
+The Licensee agrees to indemnify the University and hold the University harmless from and against any and all claims, damages and liabilities asserted by third parties (including claims for negligence) which arise directly or indirectly from the use of the Software or the sale of any products based on the Software.
+
+No part of the Software may be reproduced, modified, transmitted or transferred in any form or by any means, electronic or mechanical, without the express permission of the University. The permission of the University is not required if the said reproduction, modification, transmission or transference is done without financial return, the conditions of this Licence are imposed upon the receiver of the product, and all original and amended source code is included in any transmitted product. You may be held legally responsible for any copyright infringement that is caused or encouraged by your failure to abide by these terms and conditions.
 
 You are not permitted under this Licence to use this Software commercially. Use for which any financial return is received shall be defined as commercial use, and includes (1) integration of all or part of the source code or the Software into a product for sale or license by or on behalf of Licensee to third parties or (2) use of the Software or any derivative of it for research with the final aim of developing software products for sale or license to a third party or (3) use of the Software or any derivative of it for research with the final aim of developing non-software products for sale or license to a third party, or (4) use of the Software to provide any service to an external organisation for which payment is received. If you are interested in using the Software commercially, please contact Daniel Lawson (dan.lawson@bristol.ac.uk) to negotiate a license.
  
\ No newline at end of file
diff --git a/recipes/finestructure/build.sh b/recipes/finestructure/build.sh
index 5d7b47f0af521..baaffc178dbb1 100644
--- a/recipes/finestructure/build.sh
+++ b/recipes/finestructure/build.sh
@@ -2,9 +2,12 @@
 
 mkdir -p $PREFIX/bin
 
-./configure --prefix=$PREFIX && make && make install
+if [[ "$OSTYPE" == "darwin"* ]];then
+  mv fs_mac_clang $PREFIX/bin/fs
+fi
+if [[ "$OSTYPE" == "linux-gnu"* ]];then
+  mv fs_linux_glibc2.3 $PREFIX/bin/fs
+fi
 
 # support scripts
-cp scripts/{beagle2chromopainter.pl,chromopainter2chromopainterv2.pl,convertrecfile.pl} $PREFIX/bin/
-cp scripts/{impute2chromopainter.pl,makeuniformrecfile.pl,msms2cp.pl,phasescreen.pl} $PREFIX/bin/
-cp scripts/{phasesubsample.pl,plink2chromopainter.pl} $PREFIX/bin/
\ No newline at end of file
+cp *.pl *.R finestructuregreedy.sh $PREFIX/bin/
\ No newline at end of file
diff --git a/recipes/finestructure/meta.yaml b/recipes/finestructure/meta.yaml
index bf065e27e924a..ba94dfcf7271b 100644
--- a/recipes/finestructure/meta.yaml
+++ b/recipes/finestructure/meta.yaml
@@ -1,38 +1,34 @@
+{% set version = "4.1.1" %}
 {% set variant = "openblas" %}
 
 package:
   name: finestructure
-  version: '2.1.3'
+  version: '{{ version }}'
 
 source:
-  url: https://people.maths.bris.ac.uk/~madjl/finestructure/fs-2.1.3.tar.gz
-  sha256: f771ee6795b2ce6a5032412b3f856598c3c37308f722ddfcb62174baaf7779f2
+  url: https://people.maths.bris.ac.uk/~madjl/finestructure/fs_{{ version }}.zip
+  sha256: 7af2dd51b02bf117e364f70e76d03920b0cd9ec17111b5be94dd2a5ab906b75e
   patches:
+    - perl.patch
     - noSwitch.patch
 
 build:
-  number: 7
-  skip: true # [win]
+  number: 0
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage('finestructure', max_pin='x.x') }}
 
 requirements:
-  build:
-    - make
-    - {{ compiler('cxx') }}
-    - patch
   host:
-    - gsl
-    - zlib
     - perl
-    # Force openblas here to ensure that we use GSL from conda-forge
-    # Following the conventions from the scipy feedstock. See below in 'run' also.
-    - blas 1.1 {{ variant }}  # [unix]
-    - openblas  # [unix]
+    - clang
+    - r-xml
+    - r-ape
   run:
-    - gsl
-    - zlib
     - perl
-    - blas 1.1 {{ variant }}  # [unix]
-    - openblas  # [unix]
+    - clang
+    - r-xml
+    - r-ape
 
 about:
   home: https://people.maths.bris.ac.uk/~madjl/finestructure/finestructure.html
@@ -42,7 +38,17 @@ about:
 
 test:
   commands:
-    - fs --help >> /dev/null
+    - fs -help | grep "USAGE"
+    - beagle2chromopainter.pl | grep "usage" 
+    - chromopainter2chromopainterv2.pl | grep "usage"
+    - convertrecfile.pl | grep "Usage"
+    - impute2chromopainter.pl | grep "usage"
+    - makeuniformrecfile.pl | grep "Usage"
+    - msms2cp.pl | grep "usage"
+    - phasescreen.pl | grep "usage"
+    - phasesubsample.pl | grep "usage"
+    - plink2chromopainter.pl | grep "Usage"
+
 
 extra:
   identifiers:
diff --git a/recipes/finestructure/noSwitch.patch b/recipes/finestructure/noSwitch.patch
index 5dc77801c6a1b..edba10a5474b8 100644
--- a/recipes/finestructure/noSwitch.patch
+++ b/recipes/finestructure/noSwitch.patch
@@ -1,7 +1,7 @@
-diff --git a/scripts/beagle2chromopainter.pl b/scripts/beagle2chromopainter.pl
+diff --git beagle2chromopainter.pl beagle2chromopainter.pl
 index a53b236..55d5a2b 100755
---- a/scripts/beagle2chromopainter.pl
-+++ b/scripts/beagle2chromopainter.pl
+--- beagle2chromopainter.pl
++++ beagle2chromopainter.pl
 @@ -33,7 +33,6 @@ sub trim($){  # remove whitespace from beginning and end of the argument
  	return $string;
  }
@@ -30,10 +30,10 @@ index a53b236..55d5a2b 100755
  	    $argon++;
  	}
  }
-diff --git a/scripts/convertrecfile.pl b/scripts/convertrecfile.pl
+diff --git convertrecfile.pl convertrecfile.pl
 index 58bc7bd..fcd23b7 100755
---- a/scripts/convertrecfile.pl
-+++ b/scripts/convertrecfile.pl
+--- convertrecfile.pl
++++ convertrecfile.pl
 @@ -7,7 +7,6 @@
  
  package convertrecfile;
@@ -248,10 +248,10 @@ index 58bc7bd..fcd23b7 100755
  
  my $numsnps=scalar(@snps);
  if ($verbose) {print "Found $numsnps SNPS in phase file\n";}
-diff --git a/scripts/impute2chromopainter.pl b/scripts/impute2chromopainter.pl
+diff --git impute2chromopainter.pl impute2chromopainter.pl
 index aa709e8..70566f0 100755
---- a/scripts/impute2chromopainter.pl
-+++ b/scripts/impute2chromopainter.pl
+--- impute2chromopainter.pl
++++ impute2chromopainter.pl
 @@ -25,7 +25,6 @@ print(" !!! WARNING:  THIS PROGRAM DOES NOT SUFFICIENTLY CHECK FOR MISSPECIFIED
  die "\n";
  }
@@ -280,10 +280,10 @@ index aa709e8..70566f0 100755
  	    $argon++;
  	}
  }
-diff --git a/scripts/msms2cp.pl b/scripts/msms2cp.pl
+diff --git msms2cp.pl msms2cp.pl
 index 151e865..221c6ee 100755
---- a/scripts/msms2cp.pl
-+++ b/scripts/msms2cp.pl
+--- msms2cp.pl
++++ msms2cp.pl
 @@ -1,6 +1,5 @@
  #!/usr/bin/perl
  ## CONVERTS PHASED IMPUTE2 OUTPUT TO CHROMOPAINTER-STYLE INPUT FILES
@@ -311,10 +311,10 @@ index 151e865..221c6ee 100755
  	    $argon++;
  	}
  }
-diff --git a/scripts/plink2chromopainter.pl b/scripts/plink2chromopainter.pl
+diff --git plink2chromopainter.pl plink2chromopainter.pl
 index 6924c4e..2cb656d 100755
---- a/scripts/plink2chromopainter.pl
-+++ b/scripts/plink2chromopainter.pl
+--- plink2chromopainter.pl
++++ plink2chromopainter.pl
 @@ -6,7 +6,6 @@ use strict;
  use warnings;
  use Getopt::Long;
diff --git a/recipes/finestructure/perl.patch b/recipes/finestructure/perl.patch
new file mode 100644
index 0000000000000..134a43292d7d8
--- /dev/null
+++ b/recipes/finestructure/perl.patch
@@ -0,0 +1,81 @@
+diff -ruN beagle2chromopainter.pl beagle2chromopainter.pl
+--- beagle2chromopainter.pl     2020-05-22 17:52:34.000000000 +0200
++++ beagle2chromopainter.pl     2023-09-05 17:27:54.477603175 +0200
+@@ -1,4 +1,4 @@
+-#!/usr/bin/perl
++#!/usr/bin/env perl
+ ## CONVERTS PHASED BEAGLE OUTPUT TO CHROMOPAINTER-STYLE INPUT FILES
+
+ sub help {
+diff -ruN chromopainter2chromopainterv2.pl chromopainter2chromopainterv2.pl
+--- chromopainter2chromopainterv2.pl	2020-05-22 17:52:34.000000000 +0200
++++ chromopainter2chromopainterv2.pl	2023-09-08 16:23:44.121888309 +0200
+@@ -1,4 +1,4 @@
+-#!/usr/bin/perl
++#!/usr/bin/env perl
+ ## CONVERTS PHASE (CHROMOPAINTER) FORMAT TO (CHROMOPAINTER)V2 
+ use strict;
+ use warnings;
+diff -ruN convertrecfile.pl convertrecfile.pl
+--- convertrecfile.pl   2020-05-22 17:52:34.000000000 +0200
++++ convertrecfile.pl   2023-09-05 17:27:54.477603175 +0200
+@@ -1,4 +1,4 @@
+-#!/usr/bin/perl
++#!/usr/bin/env perl
+ #   This program is distributed in the hope that it will be useful,
+ #   but WITHOUT ANY WARRANTY; without even the implied warranty of
+ #   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+diff -ruN impute2chromopainter.pl impute2chromopainter.pl
+--- impute2chromopainter.pl     2020-05-22 17:52:34.000000000 +0200
++++ impute2chromopainter.pl     2023-09-05 17:27:54.477603175 +0200
+@@ -1,4 +1,4 @@
+-#!/usr/bin/perl
++#!/usr/bin/env perl
+ ## CONVERTS PHASED IMPUTE2 OUTPUT TO CHROMOPAINTER-STYLE INPUT FILES
+
+ sub help {
+diff -ruN makeuniformrecfile.pl makeuniformrecfile.pl
+--- makeuniformrecfile.pl       2020-05-22 17:52:34.000000000 +0200
++++ makeuniformrecfile.pl       2023-09-05 17:27:54.477603175 +0200
+@@ -1,4 +1,4 @@
+-#!/usr/bin/perl
++#!/usr/bin/env perl
+ #
+ use strict;
+ use warnings;
+diff -ruN msms2cp.pl msms2cp.pl
+--- msms2cp.pl  2020-05-22 17:52:34.000000000 +0200
++++ msms2cp.pl  2023-09-05 17:27:54.477603175 +0200
+@@ -1,4 +1,4 @@
+-#!/usr/bin/perl
++#!/usr/bin/env perl
+ ## CONVERTS PHASED IMPUTE2 OUTPUT TO CHROMOPAINTER-STYLE INPUT FILES
+ use Switch;
+ use strict;
+diff -ruN phasescreen.pl phasescreen.pl
+--- phasescreen.pl      2020-05-22 17:52:34.000000000 +0200
++++ phasescreen.pl      2023-09-05 17:27:54.477603175 +0200
+@@ -1,4 +1,4 @@
+-#!/usr/bin/perl
++#!/usr/bin/env perl
+ ## REMOVE SINGLETONS OR NON-SNPS FROM PHASE DATA
+ use strict;
+ use warnings;
+diff -ruN phasesubsample.pl phasesubsample.pl
+--- phasesubsample.pl   2020-05-22 17:52:34.000000000 +0200
++++ phasesubsample.pl   2023-09-05 17:27:54.477603175 +0200
+@@ -1,4 +1,4 @@
+-#!/usr/bin/perl
++#!/usr/bin/env perl
+ ## CONVERTS PHASE (CHROMOPAINTER) FORMAT TO BEAGLE FORMAT
+ use strict;
+ use warnings;
+diff -ruN plink2chromopainter.pl plink2chromopainter.pl
+--- plink2chromopainter.pl      2020-05-22 17:52:34.000000000 +0200
++++ plink2chromopainter.pl      2023-09-05 17:27:54.477603175 +0200
+@@ -1,4 +1,4 @@
+-#!/usr/bin/perl
++#!/usr/bin/env perl
+ #
+ #
+ #
diff --git a/recipes/firecloud/meta.yaml b/recipes/firecloud/meta.yaml
index 3ccbc103cfe72..69939470b0787 100644
--- a/recipes/firecloud/meta.yaml
+++ b/recipes/firecloud/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "firecloud" %}
-{% set version = "0.16.31" %}
+{% set version = "0.16.35" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,13 +7,15 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: d94a13028e9c82880716797c2094d1e53ee08c270a619e82075b42fc716083ea
+  sha256: 47cfacfcc69b06fa1809983faf6cc770b07bb74d3e9e4bab843c586c90d13b71
 
 build:
   number: 0
   noarch: python
   entry_points:
     - fissfc = firecloud.fiss:main_as_cli
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
 
 requirements:
@@ -22,7 +24,7 @@ requirements:
     - python
   run:
     - google-auth >=1.6.3
-    - google-cloud-sdk
+    - google-cloud-storage
     - pydot
     - python
     - requests
diff --git a/recipes/fit_nbinom/meta.yaml b/recipes/fit_nbinom/meta.yaml
index 9d12df1cc1da9..b4b3bd5093c28 100644
--- a/recipes/fit_nbinom/meta.yaml
+++ b/recipes/fit_nbinom/meta.yaml
@@ -1,24 +1,27 @@
-{% set version = "1.1" %}
+{% set version = "1.2" %}
+
 package:
   name: fit_nbinom
   version: '{{ version }}'
 
 source:
   url: 'https://github.com/joachimwolff/fit_nbinom/archive/{{ version }}.tar.gz'
-  sha256: d2a0c5e931152dfa32fee6a4d19aa8a24677c485d76f80c9ab0f15c18c8e5226
+  sha256: ec4494292fb1282b3ed90afb1732cb5a81b9ea5f373b98fce006d978f556d1f8
 
 build:
-  number: 2
-  script: "python -m pip install --no-deps --ignore-installed ."
+  number: 0
+  script: "{{ PYTHON }} -m pip install --no-deps --no-build-isolation . -vvv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('fit_nbinom', max_pin="x") }}
 
 requirements:
   host:
     - python
   run:
     - python
-    - numpy >=1.15
-    - scipy >=1.2
+    - numpy >=1.19
+    - scipy >=1.10
 
 test:
   imports:
@@ -26,7 +29,9 @@ test:
 
 about:
   home: https://github.com/joachimwolff/fit_nbinom/
-  license: GPL3
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE
   summary: Script to fit negative binomial distributions via maximum likelihood estimation.
 
 
diff --git a/recipes/flams/meta.yaml b/recipes/flams/meta.yaml
index 3609999007ff1..47602ac18f84f 100644
--- a/recipes/flams/meta.yaml
+++ b/recipes/flams/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "flams" %}
-{% set version = "0.0.8" %}
+{% set version = "1.1.4" %}
 
 package:
   name: {{ name|lower }}
@@ -7,19 +7,20 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/flams-{{ version }}.tar.gz
-  sha256: a416ea90b1daf7bbdda691ec23abd283d50c24912f523fe6eae9f320e751d974
+  sha256: 0d590d0b51f41bd47830136060f1c5d38475c1905d66a7c2ea11e417b7e641b5
 
 build:
   entry_points:
     - FLAMS = flams.flams:main
   noarch: python
-  script: {{ PYTHON }} -m pip install . -vv
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
   number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   host:
     - python >=3.10
-    - setuptools
     - pip
   run:
     - python >=3.10
@@ -32,20 +33,23 @@ requirements:
     - numpy ==1.24.3
     - requests ==2.31.0
     - urllib3 ==2.0.2
+    - pandas ==2.1.2
+    - python-dateutil ==2.8.2
+    - pytz ==2023.3.post1
+    - six ==1.16.0
+    - tzdata ==2023c
 
 test:
   imports:
     - flams
   commands:
-    - pip check
     - FLAMS --help
-  requires:
-    - pip
 
 about:
   home: https://github.com/hannelorelongin/FLAMS
   summary: Find Lysine Acylation & other Modification Sites
   license: MIT
+  license_family: MIT
   license_file: LICENSE
 
 extra:
diff --git a/recipes/flashlfq/meta.yaml b/recipes/flashlfq/meta.yaml
index f744fd416b1a7..f2e8c55ecec23 100644
--- a/recipes/flashlfq/meta.yaml
+++ b/recipes/flashlfq/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "1.2.4" %}
-{% set sha256 = "bf245899da0bac8750ceede3c7da9f7264c6607b7aaa9f585ecc2e0471de4c85" %}
+{% set version = "1.2.6" %}
+{% set sha256 = "4b5bede68303d3073c9884280c9e4215be0b08a1c7f6c2e90dd726845a41cec0" %}
 
 source:
   url: https://github.com/smith-chem-wisc/FlashLFQ/releases/download/{{version}}/FlashLFQ.zip
@@ -12,9 +12,10 @@ package:
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('flashlfq', max_pin="x") }}
 
 requirements:
-  build:
   run:
     - openssl =1.1
     - dotnet-runtime =6.0
@@ -28,7 +29,7 @@ about:
   license: LGPL-3.0
   summary: ultrafast label-free quantification algorithm for mass-spectrometry proteomics
   license_family: GPL
-  
+
 extra:
   identifiers:
    - doi:10.1021/acs.jproteome.7b00608
diff --git a/recipes/flexiplex/build.sh b/recipes/flexiplex/build.sh
new file mode 100644
index 0000000000000..62e057427f7f4
--- /dev/null
+++ b/recipes/flexiplex/build.sh
@@ -0,0 +1,6 @@
+DIR=$PREFIX/bin
+CFLAGS="-I$PREFIX/include -L$PREFIX/lib"
+
+mkdir -p $DIR
+make
+make install DIR=$DIR
diff --git a/recipes/flexiplex/meta.yaml b/recipes/flexiplex/meta.yaml
new file mode 100644
index 0000000000000..1f9b10908a891
--- /dev/null
+++ b/recipes/flexiplex/meta.yaml
@@ -0,0 +1,49 @@
+{% set version = "1.01" %}
+
+package:
+  name: flexiplex
+  version: {{ version }}
+
+source:
+  url: https://github.com/DavidsonGroup/flexiplex/releases/download/v{{ version }}/flexiplex-{{ version }}.tar.gz
+  sha256: a5b3391aded069e15422a0c201d94ca1fdc02e9fec488608b082ff2f43ca3ec7
+
+build:
+  number: 0
+  entry_points:
+    - flexiplex-filter = flexiplex_filter.main:cli
+  run_exports:
+    - {{ pin_subpackage("flexiplex", max_pin=None) }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('cxx') }}
+  host:
+    - python
+    - pip
+    - setuptools  # to install flexiplex-filter
+  run:
+    - python
+    - numpy
+    - pandas
+    - matplotlib-base
+    
+test:
+  commands:
+    - flexiplex -h
+    - flexiplex-filter -h
+
+about:
+  home: https://github.com/DavidsonGroup/flexiplex/
+  license: MIT License
+  summary: 'flexiplex: the flexible demultiplexer'
+  description: |
+    Flexiplex is a fast and versatile sequence searching and demultiplexing tool 
+    for omics data. For more information, see the accompanying bioRxiv preprint
+    "Davidson et al. Flexiplex: A versatile demultiplexer and search tool for omics data."
+  license_family: MIT
+
+extra:
+  identifiers:
+    - doi:10.1101/2023.08.21.554084 # bioRxiv preprint
diff --git a/recipes/flight-genome/meta.yaml b/recipes/flight-genome/meta.yaml
index 142b74d3d2722..cbad38fef8043 100644
--- a/recipes/flight-genome/meta.yaml
+++ b/recipes/flight-genome/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "flight-genome" %}
-{% set version = "1.5.0" %}
+{% set version = "1.6.3" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 5af30d98fe44de7d60a993f05577316817c91a5ed1561d2051f42df117d31450
+  sha256: 48a450da686d634aaed5d223d79481876836929892a5b730e42610d9b741dc6e
 
 build:
   number: 0
@@ -15,13 +15,15 @@ build:
   entry_points:
     - flight = flight.flight:main
   script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   host:
     - pip
     - python
   run:
-    - python>=3.8
+    - python >=3.8
     - biopython
 
 
@@ -29,7 +31,7 @@ test:
   imports:
     - flight
   commands:
-    - flight --help
+    - flight --version
 
 about:
   home: "https://github.com/rhysnewell/flight"
diff --git a/recipes/flopp/build.sh b/recipes/flopp/build.sh
new file mode 100644
index 0000000000000..3662f6efb60db
--- /dev/null
+++ b/recipes/flopp/build.sh
@@ -0,0 +1,8 @@
+#!/bin/bash -euo
+
+# Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
+# We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
+export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="$(pwd)/.cargo"
+
+# build statically linked binary with Rust
+RUST_BACKTRACE=1 cargo install --verbose --path . --root $PREFIX
diff --git a/recipes/flopp/meta.yaml b/recipes/flopp/meta.yaml
new file mode 100644
index 0000000000000..83083d68a75bd
--- /dev/null
+++ b/recipes/flopp/meta.yaml
@@ -0,0 +1,36 @@
+{% set version = "0.2.0" %}
+
+package:
+  name: flopp 
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('flopp', max_pin="x") }}
+
+source:
+  url: https://github.com/bluenote-1577/flopp/archive/v{{ version }}.tar.gz
+  sha256: 28398c18fff183c5552689569f96c85488ff77a8f838e4834f98a8f4aa2116ae
+
+requirements:
+  build:
+    - {{ compiler("cxx") }}
+    - rust >=1.39
+    - make
+    - cmake >=3.12
+
+test:
+  commands:
+    - flopp --help
+
+about:
+  home: https://github.com/bluenote-1577/flopp
+  license: MIT
+  summary: flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.
+    
+
+extra:
+  recipe-maintainers:
+    - bluenote-1577
+
diff --git a/recipes/floria/build.sh b/recipes/floria/build.sh
new file mode 100644
index 0000000000000..3662f6efb60db
--- /dev/null
+++ b/recipes/floria/build.sh
@@ -0,0 +1,8 @@
+#!/bin/bash -euo
+
+# Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
+# We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
+export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="$(pwd)/.cargo"
+
+# build statically linked binary with Rust
+RUST_BACKTRACE=1 cargo install --verbose --path . --root $PREFIX
diff --git a/recipes/floria/meta.yaml b/recipes/floria/meta.yaml
new file mode 100644
index 0000000000000..ff7c268607c96
--- /dev/null
+++ b/recipes/floria/meta.yaml
@@ -0,0 +1,36 @@
+{% set version = "0.0.1" %}
+
+package:
+  name: floria
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('floria', max_pin="x") }}
+
+source:
+  url: https://github.com/bluenote-1577/floria/archive/v{{ version }}.tar.gz
+  sha256: 48430783e411225a90282f65afb05a1e7e3d1d2bfb78fa838e359802530f4be1
+
+requirements:
+  build:
+    - {{ compiler("cxx") }}
+    - rust >=1.62
+    - make
+    - cmake >=3.12
+
+test:
+  commands:
+    - floria --help
+
+about:
+  home: https://github.com/bluenote-1577/floria
+  license: MIT
+  summary: Floria is method for recovering strain-level haplotypes and clusters of reads from metagenomic short or long read sequencing data by haplotype phasing.
+    
+
+extra:
+  recipe-maintainers:
+    - bluenote-1577
+
diff --git a/recipes/flye/0001-Makefile-aarch64.patch b/recipes/flye/0001-Makefile-aarch64.patch
new file mode 100644
index 0000000000000..c408cad27e3e3
--- /dev/null
+++ b/recipes/flye/0001-Makefile-aarch64.patch
@@ -0,0 +1,15 @@
+diff --git a/Makefile b/Makefile
+index 75f62ae..91b9571 100644
+--- a/Makefile
++++ b/Makefile
+@@ -16,6 +16,10 @@ ifeq ($(shell uname -m),arm64)
+ 	export aarch64=1
+ endif
+ 
++ifeq ($(shell uname -m),aarch64)
++	export aarch64=1
++endif
++
+ .PHONY: clean all profile debug minimap2 samtools
+ 
+ .DEFAULT_GOAL := all
diff --git a/recipes/flye/build.sh b/recipes/flye/build.sh
index 371f8f3d1246c..f40332d3ed6b5 100644
--- a/recipes/flye/build.sh
+++ b/recipes/flye/build.sh
@@ -1,22 +1,26 @@
-#!/bin/bash
+#!/bin/bash -euo
 
 #zlib headers for minimap
 sed -i.bak 's/CFLAGS=/CFLAGS+=/' lib/minimap2/Makefile
 sed -i.bak 's/INCLUDES=/INCLUDES+=/' lib/minimap2/Makefile
-export CFLAGS="-L$PREFIX/lib"
+export CFLAGS="${CFLAGS} -O3 -L$PREFIX/lib"
 export INCLUDES="-I$PREFIX/include"
 
+rm -rf lib/minimap2/*.bak
+
 #zlib headers for flye binaries
-export CXXFLAGS="-I$PREFIX/include"
-export LDFLAGS="-L$PREFIX/lib"
+export CXXFLAGS="$CXXFLAGS -O3 -I$PREFIX/include"
+export LDFLAGS="$LDFLAGS -L$PREFIX/lib"
 
 #install_name_tool error fix
 if [[ "$(uname)" == Darwin ]]; then
     export LDFLAGS="$LDFLAGS -headerpad_max_install_names"
 fi
 
-#dynamic flag is needed for backtrace printing, 
+#dynamic flag is needed for backtrace printing,
 #but it seems it fails OSX build
 sed -i.bak 's/-rdynamic//' src/Makefile
 
-$PYTHON setup.py install --single-version-externally-managed --record record.txt
+rm -rf src/*.bak
+
+${PYTHON} -m pip install --no-deps --no-build-isolation --no-cache-dir . -vvv
diff --git a/recipes/flye/meta.yaml b/recipes/flye/meta.yaml
index 7a4d3c1671303..78ea32a7aca80 100644
--- a/recipes/flye/meta.yaml
+++ b/recipes/flye/meta.yaml
@@ -1,15 +1,23 @@
-{% set version = "2.9.2" %}
+{% set name = "flye" %}
+{% set version = "2.9.4" %}
+{% set sha256 = "197a2dfe39fc324a39d8e1901af4f539609159c4a64a578ec8e60f73f5ea4696" %}
 
 package:
-  name: flye
+  name: {{ name }}
   version: {{ version }}
 
 source:
   url: https://github.com/fenderglass/Flye/archive/{{ version }}.tar.gz
-  sha256: 4b9534b912c805d44b83d497b40102bed807678b82be62667129bf1641676402
+  sha256: {{ sha256 }}
+  patches:
+    - 0001-Makefile-aarch64.patch
 
 build:
-  number: 2
+  number: 0
+  entry_points:
+    - flye = flye.main:main
+  run_exports:
+    - {{ pin_subpackage("flye", max_pin="x") }}
 
 requirements:
   build:
@@ -17,23 +25,30 @@ requirements:
     - make
   host:
     - python
-    - setuptools
     - zlib
   run:
     - python
-    - setuptools
-
-extra:
-  skip-lints:
-    - uses_setuptools  #uses pkg_resources
 
 test:
   commands:
-    - flye -h | grep Assembly
-      #skip failing tests for now, some kind of trouble with minimap2
+    - flye -h | grep "Assembly"
     - python -c "import flye.tests.test_toy as t; t.main()"
 
 about:
-  home: https://github.com/fenderglass/Flye/
-  license: BSD-3-Clause
-  summary: Fast and accurate de novo assembler for single molecule sequencing reads
+  home: "https://github.com/fenderglass/Flye"
+  license: "BSD-3-Clause"
+  license_family: BSD
+  license_file: LICENSE
+  summary: "A fast and accurate de novo assembler for single molecule sequencing reads using repeat graphs."
+  doc_url: "https://github.com/fenderglass/Flye/blob/flye/docs/USAGE.md"
+  dev_url: "https://github.com/fenderglass/Flye"
+
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:Flye
+    - usegalaxy-eu:flye
+    - doi:10.1038/s41592-020-00971-x
+    - doi:10.1038/s41587-019-0072-8
+    - doi:10.1073/pnas.1604560113
diff --git a/recipes/foldcomp/meta.yaml b/recipes/foldcomp/meta.yaml
index e27989971aa76..96977ef6197a7 100644
--- a/recipes/foldcomp/meta.yaml
+++ b/recipes/foldcomp/meta.yaml
@@ -1,12 +1,14 @@
-{% set version = "0.0.5" %}
-{% set sha256 = "f4997c67023946287a3958866a75a9776978d533ec8cbcb1b6ccc8b2c081d0b2" %}
+{% set version = "0.0.7" %}
+{% set sha256 = "34cf6df7bb48f6bdd5c94337ddb1e1f16eafead841da8afed62dac1b5b8a9467" %}
 
 package:
   name: foldcomp
   version: {{ version }}
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('foldcomp', max_pin="x.x") }}
 
 source:
   url: https://github.com/steineggerlab/foldcomp/archive/v{{ version }}.tar.gz
@@ -31,10 +33,11 @@ test:
 
 about:
   home: https://github.com/steineggerlab/foldcomp
-  license: GPLv3
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE.txt
   summary: "Foldcomp: a library and format for compressing and indexing large protein structure sets"
 
 extra:
   identifiers:
-    - doi:10.1101/2022.12.09.519715
+    - doi:10.1093/bioinformatics/btad153
diff --git a/recipes/foldseek/build.sh b/recipes/foldseek/build.sh
index 0d987840efe4b..b06956020200b 100644
--- a/recipes/foldseek/build.sh
+++ b/recipes/foldseek/build.sh
@@ -1,8 +1,18 @@
-#!/bin/bash -e
+#!/bin/bash
+
+ARCH_BUILD=""
+case $(uname -m) in
+    x86_64) ARCH_BUILD="-DHAVE_SSE4_1=1" ;;
+    arm64|aarch64) ARCH_BUILD="-DHAVE_ARM8=1" ;;
+esac
+
+if [ -z "${ARCH_BUILD}" ]; then
+    echo "Invalid architecture"
+    exit 1
+fi
 
 mkdir build
 cd build
-cmake -DCMAKE_INSTALL_PREFIX="${PREFIX}" -DHAVE_TESTS=0 -DHAVE_MPI=0 -DHAVE_SSE4_1=1 -DVERSION_OVERRIDE="${PKG_VERSION}" ..
+cmake -DCMAKE_INSTALL_PREFIX="${PREFIX}" -DHAVE_TESTS=0 -DHAVE_MPI=0 ${ARCH_BUILD} -DVERSION_OVERRIDE="${PKG_VERSION}" ..
 make -j${CPU_COUNT} ${VERBOSE_CM}
 make install
-
diff --git a/recipes/foldseek/meta.yaml b/recipes/foldseek/meta.yaml
index 88d7f96e03d94..6b7f4cfe4bef3 100644
--- a/recipes/foldseek/meta.yaml
+++ b/recipes/foldseek/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "7-04e0ec8" %}
-{% set sha256 = "009d722d600248a680b9e1e9dcb3bf799f8be8de41e80a598b7f39a5ced54191" %}
+{% set version = "9-427df8a" %}
+{% set sha256 = "b17d2d85b49a8508f79ffd8b15e54afc5feef5f3fb0276a291141ca5dbbbe8bc" %}
 
 package:
   name: foldseek
@@ -7,6 +7,8 @@ package:
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage('foldseek', max_pin="x") }}
 
 source:
   url: https://github.com/steineggerlab/foldseek/archive/{{ version }}.tar.gz
@@ -47,7 +49,11 @@ about:
 extra:
   identifiers:
     - doi:10.1038/s41587-023-01773-0
+    - doi:10.1038/s41586-023-06510-w
+    - doi:10.1101/2024.04.14.589414
     - biotools:foldseek
   recipe-maintainers:
     - milot-mirdita
     - martin-steinegger
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/fq/meta.yaml b/recipes/fq/meta.yaml
index 31b352024d06c..473e91edef61f 100644
--- a/recipes/fq/meta.yaml
+++ b/recipes/fq/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "fq" %}
-{% set version = "0.10.0" %}
-{% set sha256 = "34007ab71a873e1b066d910e90c5bdac3dcc4299ae6c9891ac6d8233cffeabb8" %}
+{% set version = "0.11.0" %}
+{% set sha256 = "9bd87c66f230ad8bdd29d1220d0a7079d4d2c53df6c2ad33f4e5d845ece63c78" %}
 
 package:
   name: {{ name|lower }}
@@ -11,7 +11,9 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 0
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('fq', max_pin="x") }}
 
 requirements:
   build:
@@ -31,10 +33,11 @@ about:
     validating FASTQ files.
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   recipe-maintainers:
     - claymcleod
     - Midnighter
     - zaeleus
   skip-lints:
     - should_be_noarch_generic  # Rust's `cargo build` command makes this not a noarch recipe.
-
diff --git a/recipes/fragpipe/build.sh b/recipes/fragpipe/build.sh
new file mode 100644
index 0000000000000..9ea5f09a40436
--- /dev/null
+++ b/recipes/fragpipe/build.sh
@@ -0,0 +1,21 @@
+#!/bin/bash
+
+# Copy entire FragPipe installation including workflows into share location.
+TARGET="$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM"
+mkdir -p "$TARGET"
+
+# DIA-NN license is currently incompatible with bioconda
+rm -rf fragpipe_source/tools/diann{,_so}
+rm -rf fragpipe_source/tools/diann{,_so}
+cp -rp fragpipe_source/* "$TARGET"
+
+# Copy wrapper script, which checks license keys, into bin.
+mkdir "$PREFIX/bin"
+cp "$RECIPE_DIR/fragpipe" "$PREFIX/bin"
+
+# Copy Philosopher installation into share and link to bin.
+PHILOSOPHER_DIR="$TARGET/philosopher"
+mkdir "$PHILOSOPHER_DIR"
+cp philosopher_source/philosopher philosopher_source/philosopher.yml "$PHILOSOPHER_DIR"
+ln -s "$PHILOSOPHER_DIR/philosopher" "$PREFIX/bin/philosopher"
+chmod ugo+x "$PHILOSOPHER_DIR/philosopher"
diff --git a/recipes/fragpipe/fragpipe b/recipes/fragpipe/fragpipe
new file mode 100755
index 0000000000000..0de8efde2f0d9
--- /dev/null
+++ b/recipes/fragpipe/fragpipe
@@ -0,0 +1,64 @@
+#!/bin/bash
+
+# Wrapper script for command-line FragPipe. Ensures the user agrees to MSFragger and IonQuant academic licenses.
+
+license_agreement_text='
+Please accept the academic license.
+
+FragPipe uses tools that are available freely for academic research and educational purposes only.
+
+Please provide license keys for MSFragger and IonQuant with the --msfragger_key and --ionquant_key flags. By passing these, you verify that you have read the ACADEMIC licenses for the MSFragger and IonQuant tools. You may obtain these keys by agreeing to the terms at http://msfragger-upgrader.nesvilab.org/upgrader/ and https://msfragger.arsci.com/ionquant/.'
+
+declare -a fragpipe_args
+
+while [[ $# -gt 0 ]]; do
+    case "$1" in
+        --msfragger_key)
+            shift
+            msfragger_key=$1
+            ;;
+        --ionquant_key)
+            shift
+            ionquant_key=$1
+            ;;
+        --workflow)
+            fragpipe_args+=("$1")
+            shift
+            workflow_file="$1"
+            fragpipe_args+=("$1")
+            ;;
+        *)
+            fragpipe_args+=("$1")
+            ;;
+    esac
+    shift
+done
+
+if [[ ! -z "$workflow_file" ]]; then
+    # Because the DIA-NN license is incompatible with bioconda, we remove the feature.
+    grep 'diann.run-dia-nn=true' "$workflow_file" >/dev/null
+    if [[ $? -eq 0 ]]; then
+        echo "Error: DIA-NN is disabled in the FragPipe bioconda package."
+        exit 1
+    fi
+fi
+
+if [[ -z $msfragger_key || -z $ionquant_key ]]; then
+    echo "$license_agreement_text"
+    exit 1
+else
+    msfragger --key $msfragger_key --help | grep 'License key verified' >/dev/null 2>&1
+    if [[ $? -ne 0 ]]; then
+        echo "Error: Invalid MSFragger license key"
+        echo "$license_agreement_text"
+        exit 1
+    fi
+    ionquant --key $ionquant_key --help | grep 'License key verified' >/dev/null 2>&1
+    if [[ $? -ne 0 ]]; then
+        echo "Error: Invalid IonQuant license key"
+        echo "$license_agreement_text"
+        exit 1
+    fi
+fi
+
+sh "$CONDA_PREFIX"/share/fragpipe*/bin/fragpipe "${fragpipe_args[@]}"
diff --git a/recipes/fragpipe/licenses/dia-umpire_LICENSE.txt b/recipes/fragpipe/licenses/dia-umpire_LICENSE.txt
new file mode 100644
index 0000000000000..f288702d2fa16
--- /dev/null
+++ b/recipes/fragpipe/licenses/dia-umpire_LICENSE.txt
@@ -0,0 +1,674 @@
+                    GNU GENERAL PUBLIC LICENSE
+                       Version 3, 29 June 2007
+
+ Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/>
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+                            Preamble
+
+  The GNU General Public License is a free, copyleft license for
+software and other kinds of works.
+
+  The licenses for most software and other practical works are designed
+to take away your freedom to share and change the works.  By contrast,
+the GNU General Public License is intended to guarantee your freedom to
+share and change all versions of a program--to make sure it remains free
+software for all its users.  We, the Free Software Foundation, use the
+GNU General Public License for most of our software; it applies also to
+any other work released this way by its authors.  You can apply it to
+your programs, too.
+
+  When we speak of free software, we are referring to freedom, not
+price.  Our General Public Licenses are designed to make sure that you
+have the freedom to distribute copies of free software (and charge for
+them if you wish), that you receive source code or can get it if you
+want it, that you can change the software or use pieces of it in new
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+
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+you modify it: responsibilities to respect the freedom of others.
+
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+
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+authors' sake, the GPL requires that modified versions be marked as
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+
+  11. Patents.
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+  A "contributor" is a copyright holder who authorizes use under this
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+  A contributor's "essential patent claims" are all patent claims
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+available, or (2) arrange to deprive yourself of the benefit of the
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+actual knowledge that, but for the patent license, your conveying the
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+
+  If, pursuant to or in connection with a single transaction or
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+you grant is automatically extended to all recipients of the covered
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+
+  A patent license is "discriminatory" if it does not include within
+the scope of its coverage, prohibits the exercise of, or is
+conditioned on the non-exercise of one or more of the rights that are
+specifically granted under this License.  You may not convey a covered
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+or that patent license was granted, prior to 28 March 2007.
+
+  Nothing in this License shall be construed as excluding or limiting
+any implied license or other defenses to infringement that may
+otherwise be available to you under applicable patent law.
+
+  12. No Surrender of Others' Freedom.
+
+  If conditions are imposed on you (whether by court order, agreement or
+otherwise) that contradict the conditions of this License, they do not
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+not convey it at all.  For example, if you agree to terms that obligate you
+to collect a royalty for further conveying from those to whom you convey
+the Program, the only way you could satisfy both those terms and this
+License would be to refrain entirely from conveying the Program.
+
+  13. Use with the GNU Affero General Public License.
+
+  Notwithstanding any other provision of this License, you have
+permission to link or combine any covered work with a work licensed
+under version 3 of the GNU Affero General Public License into a single
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+License will continue to apply to the part which is the covered work,
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+combination as such.
+
+  14. Revised Versions of this License.
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+  The Free Software Foundation may publish revised and/or new versions of
+the GNU General Public License from time to time.  Such new versions will
+be similar in spirit to the present version, but may differ in detail to
+address new problems or concerns.
+
+  Each version is given a distinguishing version number.  If the
+Program specifies that a certain numbered version of the GNU General
+Public License "or any later version" applies to it, you have the
+option of following the terms and conditions either of that numbered
+version or of any later version published by the Free Software
+Foundation.  If the Program does not specify a version number of the
+GNU General Public License, you may choose any version ever published
+by the Free Software Foundation.
+
+  If the Program specifies that a proxy can decide which future
+versions of the GNU General Public License can be used, that proxy's
+public statement of acceptance of a version permanently authorizes you
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+
+  Later license versions may give you additional or different
+permissions.  However, no additional obligations are imposed on any
+author or copyright holder as a result of your choosing to follow a
+later version.
+
+  15. Disclaimer of Warranty.
+
+  THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
+APPLICABLE LAW.  EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
+HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY
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+  16. Limitation of Liability.
+
+  IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
+WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
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+GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE
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+DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
+PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
+EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
+SUCH DAMAGES.
+
+  17. Interpretation of Sections 15 and 16.
+
+  If the disclaimer of warranty and limitation of liability provided
+above cannot be given local legal effect according to their terms,
+reviewing courts shall apply local law that most closely approximates
+an absolute waiver of all civil liability in connection with the
+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
+                     END OF TERMS AND CONDITIONS
+
+            How to Apply These Terms to Your New Programs
+
+  If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
+  To do so, attach the following notices to the program.  It is safest
+to attach them to the start of each source file to most effectively
+state the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+    <one line to give the program's name and a brief idea of what it does.>
+    Copyright (C) <year>  <name of author>
+
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+Also add information on how to contact you by electronic and paper mail.
+
+  If the program does terminal interaction, make it output a short
+notice like this when it starts in an interactive mode:
+
+    <program>  Copyright (C) <year>  <name of author>
+    This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+    This is free software, and you are welcome to redistribute it
+    under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License.  Of course, your program's commands
+might be different; for a GUI interface, you would use an "about box".
+
+  You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+<https://www.gnu.org/licenses/>.
+
+  The GNU General Public License does not permit incorporating your program
+into proprietary programs.  If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library.  If this is what you want to do, use the GNU Lesser General
+Public License instead of this License.  But first, please read
+<https://www.gnu.org/licenses/why-not-lgpl.html>.
diff --git a/recipes/fragpipe/licenses/easypqp_LICENSE.txt b/recipes/fragpipe/licenses/easypqp_LICENSE.txt
new file mode 100644
index 0000000000000..23f913152b08b
--- /dev/null
+++ b/recipes/fragpipe/licenses/easypqp_LICENSE.txt
@@ -0,0 +1,29 @@
+BSD 3-Clause License
+
+Copyright (c) 2019, George Rosenberger
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this
+   list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice,
+   this list of conditions and the following disclaimer in the documentation
+   and/or other materials provided with the distribution.
+
+3. Neither the name of the copyright holder nor the names of its
+   contributors may be used to endorse or promote products derived from
+   this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
diff --git a/recipes/fragpipe/licenses/fragpipe_LICENSE.txt b/recipes/fragpipe/licenses/fragpipe_LICENSE.txt
new file mode 100644
index 0000000000000..91c8581154fd7
--- /dev/null
+++ b/recipes/fragpipe/licenses/fragpipe_LICENSE.txt
@@ -0,0 +1,2 @@
+FragPipe GUI is licensed under GPL version 3.
+Individual tools, such as MSFragger, DIA-Umpire, Philosopher, MSBooster, PTM-Shepherd, IonQuant, TMT-Integrator, EasyPQP, and DIA-NN, in FragPipe GUI have their own licenses.
diff --git a/recipes/fragpipe/licenses/msbooster_LICENSE.txt b/recipes/fragpipe/licenses/msbooster_LICENSE.txt
new file mode 100644
index 0000000000000..329b49e199ef5
--- /dev/null
+++ b/recipes/fragpipe/licenses/msbooster_LICENSE.txt
@@ -0,0 +1,165 @@
+                                 GNU LESSER GENERAL PUBLIC LICENSE
+                       Version 3, 29 June 2007
+
+ Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/>
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+
+  This version of the GNU Lesser General Public License incorporates
+the terms and conditions of version 3 of the GNU General Public
+License, supplemented by the additional permissions listed below.
+
+  0. Additional Definitions.
+
+  As used herein, "this License" refers to version 3 of the GNU Lesser
+General Public License, and the "GNU GPL" refers to version 3 of the GNU
+General Public License.
+
+  "The Library" refers to a covered work governed by this License,
+other than an Application or a Combined Work as defined below.
+
+  An "Application" is any work that makes use of an interface provided
+by the Library, but which is not otherwise based on the Library.
+Defining a subclass of a class defined by the Library is deemed a mode
+of using an interface provided by the Library.
+
+  A "Combined Work" is a work produced by combining or linking an
+Application with the Library.  The particular version of the Library
+with which the Combined Work was made is also called the "Linked
+Version".
+
+  The "Minimal Corresponding Source" for a Combined Work means the
+Corresponding Source for the Combined Work, excluding any source code
+for portions of the Combined Work that, considered in isolation, are
+based on the Application, and not on the Linked Version.
+
+  The "Corresponding Application Code" for a Combined Work means the
+object code and/or source code for the Application, including any data
+and utility programs needed for reproducing the Combined Work from the
+Application, but excluding the System Libraries of the Combined Work.
+
+  1. Exception to Section 3 of the GNU GPL.
+
+  You may convey a covered work under sections 3 and 4 of this License
+without being bound by section 3 of the GNU GPL.
+
+  2. Conveying Modified Versions.
+
+  If you modify a copy of the Library, and, in your modifications, a
+facility refers to a function or data to be supplied by an Application
+that uses the facility (other than as an argument passed when the
+facility is invoked), then you may convey a copy of the modified
+version:
+
+   a) under this License, provided that you make a good faith effort to
+   ensure that, in the event an Application does not supply the
+   function or data, the facility still operates, and performs
+   whatever part of its purpose remains meaningful, or
+
+   b) under the GNU GPL, with none of the additional permissions of
+   this License applicable to that copy.
+
+  3. Object Code Incorporating Material from Library Header Files.
+
+  The object code form of an Application may incorporate material from
+a header file that is part of the Library.  You may convey such object
+code under terms of your choice, provided that, if the incorporated
+material is not limited to numerical parameters, data structure
+layouts and accessors, or small macros, inline functions and templates
+(ten or fewer lines in length), you do both of the following:
+
+   a) Give prominent notice with each copy of the object code that the
+   Library is used in it and that the Library and its use are
+   covered by this License.
+
+   b) Accompany the object code with a copy of the GNU GPL and this license
+   document.
+
+  4. Combined Works.
+
+  You may convey a Combined Work under terms of your choice that,
+taken together, effectively do not restrict modification of the
+portions of the Library contained in the Combined Work and reverse
+engineering for debugging such modifications, if you also do each of
+the following:
+
+   a) Give prominent notice with each copy of the Combined Work that
+   the Library is used in it and that the Library and its use are
+   covered by this License.
+
+   b) Accompany the Combined Work with a copy of the GNU GPL and this license
+   document.
+
+   c) For a Combined Work that displays copyright notices during
+   execution, include the copyright notice for the Library among
+   these notices, as well as a reference directing the user to the
+   copies of the GNU GPL and this license document.
+
+   d) Do one of the following:
+
+       0) Convey the Minimal Corresponding Source under the terms of this
+       License, and the Corresponding Application Code in a form
+       suitable for, and under terms that permit, the user to
+       recombine or relink the Application with a modified version of
+       the Linked Version to produce a modified Combined Work, in the
+       manner specified by section 6 of the GNU GPL for conveying
+       Corresponding Source.
+
+       1) Use a suitable shared library mechanism for linking with the
+       Library.  A suitable mechanism is one that (a) uses at run time
+       a copy of the Library already present on the user's computer
+       system, and (b) will operate properly with a modified version
+       of the Library that is interface-compatible with the Linked
+       Version.
+
+   e) Provide Installation Information, but only if you would otherwise
+   be required to provide such information under section 6 of the
+   GNU GPL, and only to the extent that such information is
+   necessary to install and execute a modified version of the
+   Combined Work produced by recombining or relinking the
+   Application with a modified version of the Linked Version. (If
+   you use option 4d0, the Installation Information must accompany
+   the Minimal Corresponding Source and Corresponding Application
+   Code. If you use option 4d1, you must provide the Installation
+   Information in the manner specified by section 6 of the GNU GPL
+   for conveying Corresponding Source.)
+
+  5. Combined Libraries.
+
+  You may place library facilities that are a work based on the
+Library side by side in a single library together with other library
+facilities that are not Applications and are not covered by this
+License, and convey such a combined library under terms of your
+choice, if you do both of the following:
+
+   a) Accompany the combined library with a copy of the same work based
+   on the Library, uncombined with any other library facilities,
+   conveyed under the terms of this License.
+
+   b) Give prominent notice with the combined library that part of it
+   is a work based on the Library, and explaining where to find the
+   accompanying uncombined form of the same work.
+
+  6. Revised Versions of the GNU Lesser General Public License.
+
+  The Free Software Foundation may publish revised and/or new versions
+of the GNU Lesser General Public License from time to time. Such new
+versions will be similar in spirit to the present version, but may
+differ in detail to address new problems or concerns.
+
+  Each version is given a distinguishing version number. If the
+Library as you received it specifies that a certain numbered version
+of the GNU Lesser General Public License "or any later version"
+applies to it, you have the option of following the terms and
+conditions either of that published version or of any later version
+published by the Free Software Foundation. If the Library as you
+received it does not specify a version number of the GNU Lesser
+General Public License, you may choose any version of the GNU Lesser
+General Public License ever published by the Free Software Foundation.
+
+  If the Library as you received it specifies that a proxy can decide
+whether future versions of the GNU Lesser General Public License shall
+apply, that proxy's public statement of acceptance of any version is
+permanent authorization for you to choose that version for the
+Library.
diff --git a/recipes/resfinder/LICENSE-2.0.txt b/recipes/fragpipe/licenses/ptm-shepherd_LICENSE.txt
similarity index 100%
rename from recipes/resfinder/LICENSE-2.0.txt
rename to recipes/fragpipe/licenses/ptm-shepherd_LICENSE.txt
diff --git a/recipes/fragpipe/meta.yaml b/recipes/fragpipe/meta.yaml
new file mode 100644
index 0000000000000..873f31d126e29
--- /dev/null
+++ b/recipes/fragpipe/meta.yaml
@@ -0,0 +1,72 @@
+{% set name = "FragPipe" %}
+{% set version = "20.0" %}
+{% set philosopher_version = "5.0.0" %}
+
+# These keys were generated ONLY for the testing of this bioconda package.
+# Users must generate their own key by agreeing to the terms at https://msfragger-upgrader.nesvilab.org/upgrader/ and https://msfragger.arsci.com/ionquant/.
+{% set msfragger_academic_use_only_key = "f28c4be2-759b0a11-6c1ea652-1240565a" %}
+{% set ionquant_academic_use_only_key = "b6c0ad83-9a4e8900-3e83d29c-aeba3bfb" %}
+
+package:
+  name: fragpipe
+  version: {{ version }}
+
+build:
+  number: 2
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage('fragpipe', max_pin="x.x") }}
+
+source:
+  - url: https://github.com/Nesvilab/{{ name }}/releases/download/{{ version }}/{{ name }}-{{ version }}.zip
+    sha256: 0d77db85ae26c190a915823e1c68238f3a19533810734b008564b2a8d85d1bd6
+    folder: fragpipe_source
+  - url: https://github.com/Nesvilab/philosopher/releases/download/v{{ philosopher_version }}/philosopher_v{{ philosopher_version }}_linux_amd64.zip
+    sha256: b0f6a6d22ca72efd54d1143142648e110b211eccaba20fe169ee65509da02fad
+    folder: philosopher_source
+
+requirements:
+  run:
+    - openjdk >=9
+    - python =3.9
+    - msfragger >=4.0
+    - ionquant >=1.10.12
+    - easypqp >=0.1.34
+    - lxml
+
+test:
+  commands:
+    - fragpipe --msfragger_key {{ msfragger_academic_use_only_key }} --ionquant_key {{ ionquant_academic_use_only_key }} --help | grep "FragPipe v{{ version }}"
+
+about:
+  home: https://github.com/Nesvilab/FragPipe
+  license: GPL-3.0 + LICENSE files
+  license_file:
+      - licenses/fragpipe_LICENSE.txt
+      - licenses/dia-umpire_LICENSE.txt
+      - licenses/easypqp_LICENSE.txt
+      - licenses/msbooster_LICENSE.txt
+      - licenses/ptm-shepherd_LICENSE.txt
+      - philosopher_source/License
+  summary:  Pipeline for comprehensive analysis of shotgun proteomics data
+  description: |
+    FragPipe is a Java Graphical User Interface (GUI) for a suite of computational tools
+    enabling comprehensive analysis of mass spectrometry-based proteomics data.
+    It is powered by MSFragger - an ultrafast proteomic search engine suitable
+    for both conventional and "open" (wide precursor mass tolerance) peptide identification.
+    FragPipe includes the Philosopher toolkit for downstream post-processing of
+    MSFragger search results (PeptideProphet, iProphet, ProteinProphet), FDR filtering,
+    label-based quantification, and multi-experiment summary report generation.
+    Crystal-C and PTM-Shepherd are included to aid interpretation of open search results.
+    Also included in FragPipe binary are TMT-Integrator for TMT/iTRAQ isobaric
+    labeling-based quantification, IonQuant for label-free quantification with
+    match-between-run (MBR) functionality, spectral library building with EasyPQP,
+    and MSFragger-DIA and DIA-Umpire SE modules for direct analysis of data independent
+    acquisition (DIA) data.
+
+extra:
+  recipe-maintainers:
+    - reid-wagner
+  identifiers:
+    - biotools:fragpipe
+    - doi:10.1074/mcp.TIR120.002048
diff --git a/recipes/freebayes/0001-make-meson-build-conda-friendly.patch b/recipes/freebayes/0001-make-meson-build-conda-friendly.patch
new file mode 100644
index 0000000000000..98067c888dcb8
--- /dev/null
+++ b/recipes/freebayes/0001-make-meson-build-conda-friendly.patch
@@ -0,0 +1,114 @@
+From 62630d76f804c930753b0215ed09a33a02e1347e Mon Sep 17 00:00:00 2001
+From: Lightning Auriga <lightning.auriga@gmail.com>
+Date: Sat, 7 Oct 2023 12:25:42 -0400
+Subject: [PATCH 1/2] make meson build conda friendly
+
+---
+ meson.build | 58 +++++++++--------------------------------------------
+ 1 file changed, 9 insertions(+), 49 deletions(-)
+
+diff --git a/meson.build b/meson.build
+index 2a91caf..66b8016 100644
+--- a/meson.build
++++ b/meson.build
+@@ -15,7 +15,7 @@
+ #     meson build -Dstatic=true -Dprefer_system_deps=false --buildtype release
+ 
+ project('freebayes', ['cpp', 'c'],
+-        version : '1.3.6',
++        version : '1.3.7',
+         default_options : ['warning_level=1', 'cpp_std=c++17', 'optimization=3'])
+ static_build = get_option('static')
+ 
+@@ -24,21 +24,16 @@ cc = meson.get_compiler('cpp')
+ zlib_dep = dependency('zlib', static: static_build)
+ lzma_dep = dependency('liblzma', static: static_build)
+ thread_dep = dependency('threads', static: static_build)
+-tabixpp_dep = cc.find_library('tabixpp', required: false, static: static_build)
+ 
+ # to compile htslib use
+ #   meson build -Dprefer_system_deps=false
+ # otherwise it tries to pick up the local system libs
+ if get_option('prefer_system_deps')
+   htslib_dep = dependency('htslib', static: static_build, required: false)
+-  tabixpp_dep = cc.find_library('tabixpp', static: static_build, required: false)
+-  vcflib_dep = dependency('libvcflib', static: static_build, required: false)
+   seqlib_dep = dependency('libseqlib', static: static_build, required: false)
+ else
+   # uses the local git submodules
+   htslib_dep = dependency('', required : false)
+-  tabixpp_dep = dependency('', required : false)
+-  vcflib_dep = dependency('', required : false)
+   seqlib_dep = dependency('', required : false)
+ endif
+ 
+@@ -99,50 +94,15 @@ if not htslib_dep.found()
+     htslib_dep = declare_dependency(link_with : htslib_lib,
+                                     include_directories : htslib_inc)
+ else
+-    htslib_inc = []
++    htslib_inc = [get_option('prefix') + '/include']
++    htslib_lib = [get_option('prefix') + '/lib']
+ endif
+ 
+-
+-if not tabixpp_dep.found()
+-    tabixpp_inc = include_directories('contrib/vcflib/contrib/tabixpp/')
+-    tabixpp_src = files('contrib/vcflib/contrib/tabixpp/tabix.cpp')
+-    tabixpp_lib = static_library('custom_tabixpp',
+-                                 tabixpp_src,
+-                                 include_directories : [tabixpp_inc, htslib_inc],
+-                                 override_options : warn_quiet)
+-    tabixpp_dep = declare_dependency(link_with : tabixpp_lib,
+-                                     include_directories : tabixpp_inc)
+-else
+-    tabixpp_inc = []
+-endif
+-
+-if not vcflib_dep.found()
+-  vcflib_inc = include_directories(
+-    'contrib/vcflib/src',
+-    'contrib/vcflib/contrib/smithwaterman',
+-    'contrib/vcflib/contrib/multichoose',
+-    'contrib/vcflib/contrib/filevercmp',
+-    'contrib/vcflib/contrib/fastahack',
+-    )
+-  vcflib_src = files(
+-    'contrib/vcflib/src/Variant.cpp',
+-    'contrib/vcflib/src/allele.cpp',
+-    'contrib/vcflib/src/cigar.cpp',
+-    'contrib/vcflib/src/split.cpp',
+-    'contrib/vcflib/contrib/fastahack/Fasta.cpp',
+-    'contrib/vcflib/contrib/smithwaterman/SmithWatermanGotoh.cpp',
+-    'contrib/vcflib/contrib/smithwaterman/disorder.cpp',
+-    'contrib/vcflib/contrib/smithwaterman/Repeats.cpp',
+-    'contrib/vcflib/contrib/smithwaterman/LeftAlign.cpp',
+-    'contrib/vcflib/contrib/smithwaterman/IndelAllele.cpp',
+-    )
+-  vcflib_lib = static_library('custom_vcflib',
+-                              vcflib_src,
+-                              include_directories : [htslib_inc, tabixpp_inc, vcflib_inc],
+-                              override_options : warn_quiet)
+-  vcflib_dep = declare_dependency(link_with : vcflib_lib,
+-                                  include_directories : vcflib_inc)
+-endif
++tabixpp_inc = [get_option('prefix') + '/include']
++tabixpp_dep = []
++vcflib_inc = [get_option('prefix') + '/include']
++vcflib_lib = [get_option('prefix') + '/lib']
++vcflib_dep = []
+ 
+ 
+ if not seqlib_dep.found()
+@@ -227,7 +187,7 @@ freebayes_lib = static_library(
+ if static_build
+   link_arguments = '-static'
+ else
+-  link_arguments = []
++  link_arguments = ['-ltabixpp', '-lwfa2', '-lvcflib']
+ endif
+ 
+ executable('freebayes',
+-- 
+2.41.0
+
diff --git a/recipes/freebayes/0002-fix-intervaltree-include-path.patch b/recipes/freebayes/0002-fix-intervaltree-include-path.patch
new file mode 100644
index 0000000000000..ad42bf6a166ac
--- /dev/null
+++ b/recipes/freebayes/0002-fix-intervaltree-include-path.patch
@@ -0,0 +1,39 @@
+From 2ce902eee1f187dab660d07d09cf11223b2c745f Mon Sep 17 00:00:00 2001
+From: Lightning Auriga <lightning.auriga@gmail.com>
+Date: Sat, 7 Oct 2023 12:26:03 -0400
+Subject: [PATCH 2/2] fix intervaltree include path
+
+---
+ src/BedReader.cpp | 2 +-
+ src/BedReader.h   | 2 +-
+ 2 files changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/src/BedReader.cpp b/src/BedReader.cpp
+index 9dd79c7..ea79235 100644
+--- a/src/BedReader.cpp
++++ b/src/BedReader.cpp
+@@ -11,7 +11,7 @@
+ #include "Utility.h"
+ #include "BedReader.h"
+ #include "Logging.h"
+-#include "../intervaltree/IntervalTree.h"
++#include "IntervalTree.h"
+ 
+ using namespace std;
+ 
+diff --git a/src/BedReader.h b/src/BedReader.h
+index 03abb3f..8777d53 100644
+--- a/src/BedReader.h
++++ b/src/BedReader.h
+@@ -9,7 +9,7 @@
+ #include <map>
+ #include <iterator>
+ #include <algorithm>
+-#include "../intervaltree/IntervalTree.h"
++#include "IntervalTree.h"
+ #include "split.h"
+ 
+ using namespace std;
+-- 
+2.41.0
+
diff --git a/recipes/freebayes/0003-meson-macos.patch b/recipes/freebayes/0003-meson-macos.patch
new file mode 100644
index 0000000000000..47e1176d8d7ad
--- /dev/null
+++ b/recipes/freebayes/0003-meson-macos.patch
@@ -0,0 +1,13 @@
+diff --git a/meson.build b/meson.build
+index 66b8016..bf0bf10 100644
+--- a/meson.build
++++ b/meson.build
+@@ -16,7 +16,7 @@
+ 
+ project('freebayes', ['cpp', 'c'],
+         version : '1.3.7',
+-        default_options : ['warning_level=1', 'cpp_std=c++17', 'optimization=3'])
++        default_options : ['warning_level=1', 'cpp_std=c++14', 'optimization=3'])
+ static_build = get_option('static')
+ 
+ cc = meson.get_compiler('cpp')
diff --git a/recipes/freebayes/build.sh b/recipes/freebayes/build.sh
index a8ef4bb394e1f..a090a95414a3a 100644
--- a/recipes/freebayes/build.sh
+++ b/recipes/freebayes/build.sh
@@ -1,12 +1,10 @@
 #!/bin/bash
 
-#export C_INCLUDE_PATH=$PREFIX/include
-#export CPLUS_INCLUDE_PATH=$PREFIX/include
-
 mkdir build
-meson build/ --buildtype debug --prefix "${PREFIX}"
-
+mkdir -p ${PREFIX}/bin
 
+CXX="${CXX}" CC="${CC}" meson setup --buildtype release --prefix "${PREFIX}" \
+	--strip --prefer-static -Dprefer_system_deps=true build/
 
 cd build
 ninja -v
@@ -16,7 +14,6 @@ ninja -v install
 ##Copy scripts over ## This will likely need to be removed with an updated build
 cp -n ../scripts/*.py $PREFIX/bin
 cp -n ../scripts/*.sh $PREFIX/bin
-cp -n ../scripts/*.pl $PREFIX/bin 
-#cp -n ../scripts/*.R $PREFIX/bin
+cp -n ../scripts/*.pl $PREFIX/bin
 
 cp -n ../scripts/freebayes-parallel $PREFIX/bin
diff --git a/recipes/freebayes/meson.patch b/recipes/freebayes/meson.patch
deleted file mode 100644
index bc98faef5df12..0000000000000
--- a/recipes/freebayes/meson.patch
+++ /dev/null
@@ -1,18 +0,0 @@
---- freebayes/meson.build	
-+++ freebayes/meson.build	
-@@ -18,7 +18,7 @@
-
- htslib_dep = dependency('htslib', required : false)
- tabixpp_dep = cc.find_library('tabixpp', required : false)
--vcflib_dep = dependency('libvcflib', required : false)
-+vcflib_dep = cc.find_library('vcflib', required : false)
- seqlib_dep = dependency('libseqlib', required : false)
-
- # for setting a warning_level on the external code in custom_* targets below
-@@ -113,6 +113,8 @@
-                               override_options : warn_quiet)
-   vcflib_dep = declare_dependency(link_with : vcflib_lib,
-                                   include_directories : vcflib_inc)
-+else
-+    vcflib_inc = []
- endif
diff --git a/recipes/freebayes/meta.yaml b/recipes/freebayes/meta.yaml
index fbac60b01d1fe..f10c0fa32a4b2 100644
--- a/recipes/freebayes/meta.yaml
+++ b/recipes/freebayes/meta.yaml
@@ -1,16 +1,22 @@
-{% set version = "1.3.6" %}
+{% set name = "freebayes" %}
+{% set version = "1.3.7" %}
 
 package:
-  name: freebayes
+  name: {{ name }}
   version: {{ version }}
 
 source:
-  url: https://github.com/freebayes/freebayes/releases/download/v{{ version }}/freebayes-{{ version }}-src.tar.gz
-  sha256: 6016c1e58fdf34a1f6f77b720dd8e12e13a127f7cbac9c747e47954561b437f5
+  url: https://github.com/freebayes/freebayes/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 89c2202aaa82925bc6a49e04df593e5ef3b1547b3b514efcbd490a54d8ad200b
+  patches:
+    - 0001-make-meson-build-conda-friendly.patch
+    - 0002-fix-intervaltree-include-path.patch
+    - 0003-meson-macos.patch  # [osx]
 
 build:
-  number: 6
-  skip: true  # [osx]
+  number: 2
+  run_exports:
+    - {{ pin_subpackage("freebayes", max_pin="x") }}
 
 requirements:
   build:
@@ -25,25 +31,33 @@ requirements:
     - htslib
     - tabixpp
     - vcflib
+    - simde
+    - zlib
   run:
     - parallel
     - samtools
     - tabixpp
     - vcflib
-    
+    - zlib
+
 test:
   commands:
     - freebayes --version
     - freebayes-parallel
-    
+
 about:
-  home: https://github.com/ekg/freebayes
+  home: https://github.com/freebayes/freebayes
   license: MIT
   license_file: LICENSE
   license_family: MIT
   summary: Bayesian haplotype-based polymorphism discovery and genotyping
-  maintainers: jpuritz
+  dev_url: https://github.com/freebayes/freebayes
 
 extra:
-   identifiers:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
     - biotools:freebayes
+    - usegalaxy-eu:freebayes
+  recipe-maintainers:
+    - jpuritz
diff --git a/recipes/freebayes/qcfail.diff b/recipes/freebayes/qcfail.diff
deleted file mode 100644
index 31c93fe11d0af..0000000000000
--- a/recipes/freebayes/qcfail.diff
+++ /dev/null
@@ -1,37 +0,0 @@
-diff --git a/src/AlleleParser.cpp b/src/AlleleParser.cpp
-index 72c0c14..a6b16ae 100644
---- a/src/AlleleParser.cpp
-+++ b/src/AlleleParser.cpp
-@@ -2001,6 +2001,12 @@ void AlleleParser::updateAlignmentQueue(long int position,
-                 continue;
-             }
- 
-+            // skip reads that fail QC, used by VariantBam for high coverage downsampling
-+            if (currentAlignment.ISFAILQC) {
-+              DEBUG("skipping alignment " << currentAlignment.QNAME << " because it is fails QC");
-+              continue;
-+            }
-+
-             // skip alignments which have no aligned bases
-             if (currentAlignment.ALIGNEDBASES == 0) {
-                 DEBUG("skipping alignment " << currentAlignment.QNAME << " because it has no aligned bases");
-diff --git a/src/LeftAlign.h b/src/LeftAlign.h
-index 46aa8f5..98e4539 100644
---- a/src/LeftAlign.h
-+++ b/src/LeftAlign.h
-@@ -49,6 +49,7 @@ using namespace BamTools;
- #define ISPAIRED IsPaired()
- #define ISMATEMAPPED IsMateMapped()
- #define ISPROPERPAIR IsProperPair()
-+#define ISFAILQC IsFailedQC()
- #define CIGLEN Length
- #define CIGTYPE Type
- #define BAMREADER BamMultiReader
-@@ -90,6 +91,7 @@ using namespace BamTools;
- #define GETCIGAR GetCigar()
- #define GETREFID(name) Header().Name2ID(name)
- #define ISDUPLICATE DuplicateFlag()
-+#define ISFAILQC QCFailFlag()
- #define CIGLEN Length()
- #define CIGTYPE Type()
- #define ADDCIGAR add
diff --git a/recipes/freyja/meta.yaml b/recipes/freyja/meta.yaml
index 227dab312d941..361f0291e6932 100644
--- a/recipes/freyja/meta.yaml
+++ b/recipes/freyja/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.4.4" %}
+{% set version = "1.5.0" %}
 {% set name = "Freyja" %}
 
 package:
@@ -11,10 +11,12 @@ build:
   noarch: python
   entry_points:
     - freyja=freyja._cli:cli
+  run_exports:
+    - {{ pin_subpackage('freyja', max_pin="x") }}
 
 source:
   url:  https://github.com/andersen-lab/{{ name }}/archive/v{{ version }}.tar.gz
-  sha256: 53584aed2352ff15c5a04ae5d69e372ef49c317b2c2e4980fffc80471fd44f78
+  sha256: b7d95ec0a632ffda019ab01d1170bd4550f8ef41039e1987a5bc93bdc5fa0edb
 
 requirements:
   host:
diff --git a/recipes/fuc/meta.yaml b/recipes/fuc/meta.yaml
index 9970bc84660d9..aacdace66d0bc 100644
--- a/recipes/fuc/meta.yaml
+++ b/recipes/fuc/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "fuc" %}
-{% set version = "0.36.0" %} 
+{% set version = "0.37.0" %} 
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: aa2f972b527e81c488cb192490947d729f8913c5d40a2ef10093a2d3e79090bf
+  sha256: 827f254f6cb57fb897f63cc9e3d8ecc5aac56c3c3257b8ae57b13c43bb4b41c2
 
 build:
   number: 0
@@ -15,6 +15,8 @@ build:
     - fuc=fuc.__main__:main
   script: "{{ PYTHON }} -m pip install . --no-deps -vv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/fusion-inspector/meta.yaml b/recipes/fusion-inspector/meta.yaml
index 52f380a790386..cb6f81488fffb 100644
--- a/recipes/fusion-inspector/meta.yaml
+++ b/recipes/fusion-inspector/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "fusion-inspector" %}
-{% set version = "2.2.1" %}
+{% set version = "2.8.0" %}
 {% set build = "0" %}
 
 package:
@@ -8,11 +8,13 @@ package:
 
 source:
   url: https://github.com/FusionInspector/FusionInspector/releases/download/FusionInspector-v{{ version }}/FusionInspector-v{{ version }}.FULL.tar.gz
-  sha256: 3a6a885dceb39fdba0cfd6aa33d4298d3017aa0c18afa5d61d2e5f2328f7d432
+  sha256: adfef115dffce5a9f55798fe0bd6ffdf771afe94f11883b69776d58858afc2ed
 
 build:
   noarch: generic
   number: {{ build }}
+  run_exports:
+    - {{ pin_subpackage('fusion-inspector', max_pin="x") }}
 
 # Trinity is needed for the build, because we have to set its location in an environment variable.
 # We need HTSLIB >=1.3, but was complaining about unpinned. CONDA_HTSLIB is 1.6.
diff --git a/recipes/fwdpy11/build.sh b/recipes/fwdpy11/build.sh
index b03d77ec6e6a5..00d150e289830 100644
--- a/recipes/fwdpy11/build.sh
+++ b/recipes/fwdpy11/build.sh
@@ -1,8 +1,16 @@
 #!/bin/bash
 
+# Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
+# We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
+export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="${BUILD_PREFIX}/.cargo"
+
+if [ `uname` == Darwin ]; then
+	export HOME=`mktemp -d`
+fi
+
 # https://molpopgen.github.io/fwdpy11/misc/developersguide.html
 # https://doc.rust-lang.org/cargo/commands/cargo-install.html
-CARGO_INSTALL_ROOT=$BUILD_PREFIX CARGO_HOME=$BUILD_PREFIX cargo install cbindgen
+CARGO_INSTALL_ROOT=$BUILD_PREFIX CARGO_HOME=$CARGO_HOME cargo install cbindgen
 #CARGO_INSTALL_ROOT=$PREFIX CARGO_HOME=$PREFIX cargo install cbindgen
 
 # cmake's "find GSL macro" can barf when conda
@@ -10,7 +18,7 @@ CARGO_INSTALL_ROOT=$BUILD_PREFIX CARGO_HOME=$BUILD_PREFIX cargo install cbindgen
 # fix that:
 #GSL_ROOT_DIR=$PREFIX $PYTHON -m pip install --no-deps --ignore-installed -vv .
 # for mac osx need also to add other vars:
-CARGO_INSTALL_ROOT=$BUILD_PREFIX CARGO_HOME=$BUILD_PREFIX GSL_ROOT_DIR=$PREFIX $PYTHON -m pip install --no-deps --ignore-installed -vv .
+CARGO_INSTALL_ROOT=$BUILD_PREFIX CARGO_HOME=$CARGO_HOME GSL_ROOT_DIR=$PREFIX $PYTHON -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv
 # on bioconda's Azure it seems that `$PYTHON` variable is not set because get an error:
 # /opt/conda/conda-bld/fwdpy11_1670108175931/work/conda_build.sh: line 16: -m: command not found
 # so will hard-code it:
diff --git a/recipes/fwdpy11/meta.yaml b/recipes/fwdpy11/meta.yaml
index 668b8c026257d..cfbac7c97ecc0 100644
--- a/recipes/fwdpy11/meta.yaml
+++ b/recipes/fwdpy11/meta.yaml
@@ -1,74 +1,69 @@
+{% set name = "fwdpy11" %}
+{% set version = "0.22.2" %}
+
 package:
-  name: fwdpy11
-  version: "0.20.0"
+  name: {{ name|lower }}
+  version: {{ version }}
 
 source:
-  url: https://files.pythonhosted.org/packages/39/e4/f1fe9befcdb59de4a53823e80f590bb22f1b09830ae6608b768f8997e390/fwdpy11-0.20.0.tar.gz
-  sha256: d19436f651a1fb58cd73d220dfc23f96e0235b6ff556bd0733cc3b1ccb9ca477
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/fwdpy11-{{ version }}.tar.gz
+  sha256: 4bdd42d749d3c4e12f728c16d6db8c97bb5d03fff7362fe98b3c8cdfa759841d
 
 build:
-  skip: True # [py27 or py<38]
-  number: 2
+  skip: True  # [py < 38 or py > 312]
+  number: 0
+  script_env:
+    - SETUPTOOLS_SCM_PRETEND_VERSION={{ version }}
+  entry_points:
+    - fwdpy11 = fwdpy11.__main__:main
+  run_exports:
+    - {{ pin_subpackage('fwdpy11', max_pin="x.x") }}
 
 requirements:
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
+    - {{ compiler('rust') }}
     - cmake
     - make
   host:
-    - python
-    - pkgconfig
     - python
     - pip
-    - numpy >=1.20
-    - pybind11 ==2.10.0
-    - tskit >=0.5
+    - setuptools-scm >=8
+    - pybind11 ==2.11.1
     - gsl
-    - openblas
-    - attrs
-    - setuptools_scm
-    - rust >=1.62.1  
-#    - intervaltree
-#    - pybind11 >=2.10.0
-#    - numpy
-#    - scipy
-#    - attrs >=0.19.2
-#    - black
-#    - tskit
-#    - msprime
-#    - gsl
-#    - boost
-#    - pytest
-#    - pytest-xdist
-#    - setuptools_scm
-#    - demes >=0.2.0
-#    - rust >=1.62.1
-#    - hypothesis
+    - scikit-build-core >=0.3.3
   run:
     - python
-    - numpy >=1.20
-    - tskit >=0.5
+    - numpy <2.0
+    - tskit >=0.5.6
     - gsl
     - openblas
     - scipy
     - attrs
     - black
-    - demes >=0.2
+    - demes >=0.2.2
     - intervaltree
+    - deprecated
 
 test:
-  # Python imports
   imports:
     - fwdpy11
+  commands:
+    - fwdpy11 --help
 
 about:
-  home: http://pypi.python.org/pypi/fwdpy11
-  license: GNU General Public License v3 or later (GPLv3+)
+  home: https://github.com/molpopgen/fwdpy11
+  license: "GPL-3.0-or-later"
+  license_family: GPL3
   license_file: "COPYING"
   summary: 'Forward-time population genetic simulation in Python.'
+  dev_url: https://github.com/molpopgen/fwdpy11
+  doc_url: https://molpopgen.github.io/fwdpy11
 
-extras:
+extra:
   identifiers:
-    - 10.1534/genetics.114.165019
-    - 10.1371/journal.pcbi.1006581
+    - doi:10.1534/genetics.114.165019
+    - doi:10.1371/journal.pcbi.1006581
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/gadem/meta.yaml b/recipes/gadem/meta.yaml
index 283883945f57a..bf0f5a7c94fa2 100644
--- a/recipes/gadem/meta.yaml
+++ b/recipes/gadem/meta.yaml
@@ -7,7 +7,9 @@ source:
   sha256: afe89b8d1ecf7d7dc785b9f59ffdfdb511df68c147934eedc0398873fa2640dc
 
 build:
-  number: 5
+  number: 6
+  run_exports:
+    - {{ pin_subpackage('gadem', max_pin="x") }}
 
 requirements:
   build:
@@ -23,3 +25,7 @@ about:
   home: https://www.niehs.nih.gov/research/resources/software/biostatistics/gadem/index.cfm
   license: GPLv3
   summary: A Genetic Algorithm Guided Formation of Spaced Dyads Coupled with an EM Algorithm for Motif Discovery
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/gadma/meta.yaml b/recipes/gadma/meta.yaml
index e5445f18d4436..e993392fac055 100644
--- a/recipes/gadma/meta.yaml
+++ b/recipes/gadma/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "gadma" %}
-{% set version = "2.0.0rc26" %}
+{% set version = "2.0.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,33 +7,30 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 35ed38938e26026d3a0f8bb2563320c734713dfc0b201b51ba4d19e08d023953
+  sha256: 1e891b87749261ce9c1866fd3e0ac389306096e3b940eb364101448efeca4cfd
 
 build:
   number: 0
+  script_env:
+    - SETUPTOOLS_SCM_PRETEND_VERSION={{ version }}
   entry_points:
     - gadma = gadma.core:main
     - gadma-run_ls_on_boot_data = gadma.run_ls_on_boot_data:main
     - gadma-get_confidence_intervals = gadma.get_confidence_intervals:main
-  script: "{{ PYTHON }} -m pip install . --no-deps -vv"
+    - gadma-get_confidence_intervals_for_ld = gadma.get_confidence_intervals_for_ld:main
+    - gadma-precompute_ld_data = gadma.precompute_ld_data:main
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('gadma', max_pin="x") }}
 
 requirements:
-  #build:
-  #  - {{ compiler('c') }}
   host:
     - python >=3.6,<3.9
-    #- dadi
-    #- matplotlib-base
-    #- mpmath
-    ##- nlopt
-    #- numpy
-    #- pillow
     - pip
-    #- ruamel.yaml
-    #- scipy
-    - setuptools_scm 
+    - setuptools-scm
   run:
+    - python >=3.6,<3.9
     - dadi
     - matplotlib-base
     - mpmath
@@ -41,7 +38,6 @@ requirements:
     - numpy
     - pandas
     - pillow
-    - python >=3.6,<3.9
     - ruamel.yaml
     - scipy
     - networkx
@@ -63,6 +59,8 @@ test:
     - gadma --help
     - gadma-run_ls_on_boot_data --help
     - gadma-get_confidence_intervals --help
+    - gadma-get_confidence_intervals_for_ld --help
+    - gadma-precompute_ld_data --help
 
 about:
   home: "https://github.com/ctlab/GADMA"
@@ -70,6 +68,7 @@ about:
   license_family: LGPL
   license_file: LICENSE
   summary: "Genetic Algorithm for Demographic Inference"
+  doc_url: https://gadma.readthedocs.io/en/latest/
 
 extra:
   identifiers:
diff --git a/recipes/galah/meta.yaml b/recipes/galah/meta.yaml
index 362a196815042..f90f03562e182 100644
--- a/recipes/galah/meta.yaml
+++ b/recipes/galah/meta.yaml
@@ -1,14 +1,16 @@
-{% set version = "0.3.1" %}
+{% set version = "0.4.0" %}
 {% set name = "galah" %}
-{% set sha256 = "78a278a2a4d2e5f074115e41a38c426fab328d3deaac84cb55cded77e9c97428" %}
+{% set sha256 = "9b40cc805df15461e5b07fd3108663cc92d286030c17fefe5a33716b5b8fa10a" %}
 
 package:
   name: {{ name }}
   version: {{ version }}
 
 build:
-  number: 3
+  number: 1
   skip: True # [osx]
+  run_exports:
+    - {{ pin_subpackage('galah', max_pin="x.x") }}
 
 source:
   url: https://github.com/wwood/{{ name }}/archive/v{{version}}.tar.gz
@@ -20,7 +22,7 @@ requirements:
     - {{ compiler('c') }}
   run:
     - dashing ==0.4.0
-    - fastani ==1.31
+    - fastani >=1.31
 
 test:
   commands:
@@ -29,5 +31,6 @@ test:
 about:
   home: https://github.com/wwood/galah
   license: GPL-3.0-only
+  license_family: GPL3
   license_file: LICENCE.txt
   summary: Galah aims to be a more scalable metagenome assembled genome (MAG) dereplication method.
diff --git a/recipes/galaxy-files/meta.yaml b/recipes/galaxy-files/meta.yaml
index c3239a4785363..574bbf277470b 100644
--- a/recipes/galaxy-files/meta.yaml
+++ b/recipes/galaxy-files/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "23.0.5" %}
-{% set sha256 = "8133b8ce27cf7e89c966f5c06e52911b8fa714c5f125edbd9642fc4c209c4bcd" %}
+{% set version = "24.0.0" %}
+{% set sha256 = "d00dab002d94a6463bb93d6c7fab4d5dce921e7ab54de5ca59c615faa1a14038" %}
 {% set galaxy_version = version.split(".")[:2]|join(".") %}
 
 package:
@@ -13,7 +13,9 @@ source:
 build:
   noarch: python
   number: 0
-  script: "{{ PYTHON }} -m pip install . --no-deps -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    -{{ pin_subpackage('galaxy-files', max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/galaxy-objectstore/meta.yaml b/recipes/galaxy-objectstore/meta.yaml
index aecfc3d793e28..d8ec586420831 100644
--- a/recipes/galaxy-objectstore/meta.yaml
+++ b/recipes/galaxy-objectstore/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "23.0.5" %}
-{% set sha256 = "90efe2740c0c0251d68fa76e0f79938bade798128140e7d67d63bf572cebcb64" %}
+{% set version = "24.0.0" %}
+{% set sha256 = "0cd30eff8285b83320b3eb5677bb93e3d368a8e771747c906861f88ca5036cd6" %}
 {% set galaxy_version = version.split(".")[:2]|join(".") %}
 
 package:
@@ -13,18 +13,20 @@ source:
 build:
   noarch: python
   number: 0
-  script: "{{ PYTHON }} -m pip install . --no-deps -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('galaxy-objectstore', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - python >=3.6
+    - python >=3.7
     - galaxy-util >={{ galaxy_version }}
   run:
     - galaxy-util >={{ galaxy_version }}
     - pyyaml
-    - python >=3.6
-    - six >=1.9.0
+    - pydantic
+    - python >=3.7
 
 test:
   imports:
diff --git a/recipes/galaxyxml/meta.yaml b/recipes/galaxyxml/meta.yaml
index dac996e31218e..bf19b25fbba66 100644
--- a/recipes/galaxyxml/meta.yaml
+++ b/recipes/galaxyxml/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "galaxyxml" %}
-{% set version = "0.4.14" %}
+{% set version = "0.5.3" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: fbf635ed64fb85ff3a6135d6ca52afbc1c867839ecf99691790278aa68f48b8f
+  sha256: 6712e7a06ea0b0f153e29976ecf0ed6aa2c3e087c9345951223d0134bbab4405
 
 build:
   number: 0
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('galaxyxml', max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/galitime/meta.yaml b/recipes/galitime/meta.yaml
new file mode 100644
index 0000000000000..5f48c03aab361
--- /dev/null
+++ b/recipes/galitime/meta.yaml
@@ -0,0 +1,40 @@
+{% set name = "galitime" %}
+{% set version = "0.1.3" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: 3d2d77adf50d1f40f42b23070d9b7754fc84e6492d0a4cf466d0cad5cd4d569a
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - galitime=galitime.galitime:main
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('galitime', max_pin="x") }}
+
+requirements:
+  host:
+    - pip
+    - python >=3
+  run:
+    - python >=3
+
+test:
+  imports:
+    - galitime
+
+about:
+  home: https://github.com/karel-brinda/galitime
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE.txt
+  doc_url: https://github.com/karel-brinda/galitime
+  summary: 'benchmarking of scientific computaional experiments'
+
+
diff --git a/recipes/gambit/meta.yaml b/recipes/gambit/meta.yaml
index 83c982a33655e..208f7eae334dc 100644
--- a/recipes/gambit/meta.yaml
+++ b/recipes/gambit/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.0.0" %}
+{% set version = "1.0.1" %}
 
 package:
   name: gambit
@@ -6,13 +6,16 @@ package:
 
 source:
   url: https://github.com/jlumpe/gambit/archive/v{{ version }}.tar.gz
-  sha256: a2d6465a482d2113d2b03c56689871fa088b0443dd663652bf9304a9befa1470
-
+  sha256: d99285b1b8df971d36292ca3639bab5998b501262db8c72769dc1287920f73e8
 
 build:
-  number: 1
-  script: "{{ PYTHON }} -m pip install --no-deps --ignore-installed ."
+  number: 0
+  script: "{{ PYTHON }} -m pip install --no-deps --no-build-isolation . -vvv"
   skip: True  # [py < 37]
+  entry_points:
+    - gambit = gambit.cli:cli
+  run_exports:
+    - {{ pin_subpackage("gambit", max_pin="x") }}
 
 requirements:
   build:
@@ -21,11 +24,11 @@ requirements:
     - python
     - pip
     - numpy >=1.13
-    - cython
+    - cython >=0.27,<1
   run:
     - python
-    - numpy >=1.13
-    - sqlalchemy >=1.1
+    - {{ pin_compatible('numpy') }}
+    - sqlalchemy >=1.1,<2.dev0
     - biopython >=1.69
     - alembic >=1.0
     - attrs >=20
@@ -56,9 +59,16 @@ about:
     approximately 50,000 reference genomes (derived from NCBI RefSeq) to identify
     unknown bacterial genomes within seconds.
   license: AGPL-3.0-or-later
+  license_family: AGPL
   license_file: LICENSE
   doc_url: https://gambit-genomics.readthedocs.io/en/latest
+  dev_url: https://github.com/jlumpe/gambit
 
 extra:
   recipe-maintainers:
     - jlumpe
+  skip-lints:
+    - uses_setuptools  # uses pkg_resoures during run time
+  identifiers:
+    - doi:10.1371/journal.pone.0277575
+    - biotools:gambit_bacterial
diff --git a/recipes/gametes/LICENSE b/recipes/gametes/LICENSE
new file mode 100644
index 0000000000000..8a8f06b2d908f
--- /dev/null
+++ b/recipes/gametes/LICENSE
@@ -0,0 +1,362 @@
+# GNU GENERAL PUBLIC LICENSE
+
+Version 2, June 1991
+
+    Copyright (C) 1989, 1991 Free Software Foundation, Inc.  
+    51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+
+    Everyone is permitted to copy and distribute verbatim copies
+    of this license document, but changing it is not allowed.
+
+## Preamble
+
+The licenses for most software are designed to take away your freedom
+to share and change it. By contrast, the GNU General Public License is
+intended to guarantee your freedom to share and change free
+software--to make sure the software is free for all its users. This
+General Public License applies to most of the Free Software
+Foundation's software and to any other program whose authors commit to
+using it. (Some other Free Software Foundation software is covered by
+the GNU Lesser General Public License instead.) You can apply it to
+your programs, too.
+
+When we speak of free software, we are referring to freedom, not
+price. Our General Public Licenses are designed to make sure that you
+have the freedom to distribute copies of free software (and charge for
+this service if you wish), that you receive source code or can get it
+if you want it, that you can change the software or use pieces of it
+in new free programs; and that you know you can do these things.
+
+To protect your rights, we need to make restrictions that forbid
+anyone to deny you these rights or to ask you to surrender the rights.
+These restrictions translate to certain responsibilities for you if
+you distribute copies of the software, or if you modify it.
+
+For example, if you distribute copies of such a program, whether
+gratis or for a fee, you must give the recipients all the rights that
+you have. You must make sure that they, too, receive or can get the
+source code. And you must show them these terms so they know their
+rights.
+
+We protect your rights with two steps: (1) copyright the software, and
+(2) offer you this license which gives you legal permission to copy,
+distribute and/or modify the software.
+
+Also, for each author's protection and ours, we want to make certain
+that everyone understands that there is no warranty for this free
+software. If the software is modified by someone else and passed on,
+we want its recipients to know that what they have is not the
+original, so that any problems introduced by others will not reflect
+on the original authors' reputations.
+
+Finally, any free program is threatened constantly by software
+patents. We wish to avoid the danger that redistributors of a free
+program will individually obtain patent licenses, in effect making the
+program proprietary. To prevent this, we have made it clear that any
+patent must be licensed for everyone's free use or not licensed at
+all.
+
+The precise terms and conditions for copying, distribution and
+modification follow.
+
+## TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
+
+**0.** This License applies to any program or other work which
+contains a notice placed by the copyright holder saying it may be
+distributed under the terms of this General Public License. The
+"Program", below, refers to any such program or work, and a "work
+based on the Program" means either the Program or any derivative work
+under copyright law: that is to say, a work containing the Program or
+a portion of it, either verbatim or with modifications and/or
+translated into another language. (Hereinafter, translation is
+included without limitation in the term "modification".) Each licensee
+is addressed as "you".
+
+Activities other than copying, distribution and modification are not
+covered by this License; they are outside its scope. The act of
+running the Program is not restricted, and the output from the Program
+is covered only if its contents constitute a work based on the Program
+(independent of having been made by running the Program). Whether that
+is true depends on what the Program does.
+
+**1.** You may copy and distribute verbatim copies of the Program's
+source code as you receive it, in any medium, provided that you
+conspicuously and appropriately publish on each copy an appropriate
+copyright notice and disclaimer of warranty; keep intact all the
+notices that refer to this License and to the absence of any warranty;
+and give any other recipients of the Program a copy of this License
+along with the Program.
+
+You may charge a fee for the physical act of transferring a copy, and
+you may at your option offer warranty protection in exchange for a
+fee.
+
+**2.** You may modify your copy or copies of the Program or any
+portion of it, thus forming a work based on the Program, and copy and
+distribute such modifications or work under the terms of Section 1
+above, provided that you also meet all of these conditions:
+
+  
+**a)** You must cause the modified files to carry prominent notices
+stating that you changed the files and the date of any change.
+
+  
+**b)** You must cause any work that you distribute or publish, that in
+whole or in part contains or is derived from the Program or any part
+thereof, to be licensed as a whole at no charge to all third parties
+under the terms of this License.
+
+  
+**c)** If the modified program normally reads commands interactively
+when run, you must cause it, when started running for such interactive
+use in the most ordinary way, to print or display an announcement
+including an appropriate copyright notice and a notice that there is
+no warranty (or else, saying that you provide a warranty) and that
+users may redistribute the program under these conditions, and telling
+the user how to view a copy of this License. (Exception: if the
+Program itself is interactive but does not normally print such an
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+an announcement.)
+
+These requirements apply to the modified work as a whole. If
+identifiable sections of that work are not derived from the Program,
+and can be reasonably considered independent and separate works in
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+sections when you distribute them as separate works. But when you
+distribute the same sections as part of a whole which is a work based
+on the Program, the distribution of the whole must be on the terms of
+this License, whose permissions for other licensees extend to the
+entire whole, and thus to each and every part regardless of who wrote
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+
+Thus, it is not the intent of this section to claim rights or contest
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+
+In addition, mere aggregation of another work not based on the Program
+with the Program (or with a work based on the Program) on a volume of
+a storage or distribution medium does not bring the other work under
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+
+**3.** You may copy and distribute the Program (or a work based on it,
+under Section 2) in object code or executable form under the terms of
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+**a)** Accompany it with the complete corresponding machine-readable
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+
+**4.** You may not copy, modify, sublicense, or distribute the Program
+except as expressly provided under this License. Any attempt otherwise
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+will automatically terminate your rights under this License. However,
+parties who have received copies, or rights, from you under this
+License will not have their licenses terminated so long as such
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+
+**5.** You are not required to accept this License, since you have not
+signed it. However, nothing else grants you permission to modify or
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+prohibited by law if you do not accept this License. Therefore, by
+modifying or distributing the Program (or any work based on the
+Program), you indicate your acceptance of this License to do so, and
+all its terms and conditions for copying, distributing or modifying
+the Program or works based on it.
+
+**6.** Each time you redistribute the Program (or any work based on
+the Program), the recipient automatically receives a license from the
+original licensor to copy, distribute or modify the Program subject to
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+License, they do not excuse you from the conditions of this License.
+If you cannot distribute so as to satisfy simultaneously your
+obligations under this License and any other pertinent obligations,
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+example, if a patent license would not permit royalty-free
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+or indirectly through you, then the only way you could satisfy both it
+and this License would be to refrain entirely from distribution of the
+Program.
+
+If any portion of this section is held invalid or unenforceable under
+any particular circumstance, the balance of the section is intended to
+apply and the section as a whole is intended to apply in other
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+
+It is not the purpose of this section to induce you to infringe any
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+such claims; this section has the sole purpose of protecting the
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+generous contributions to the wide range of software distributed
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+impose that choice.
+
+This section is intended to make thoroughly clear what is believed to
+be a consequence of the rest of this License.
+
+**8.** If the distribution and/or use of the Program is restricted in
+certain countries either by patents or by copyrighted interfaces, the
+original copyright holder who places the Program under this License
+may add an explicit geographical distribution limitation excluding
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+countries not thus excluded. In such case, this License incorporates
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+
+**9.** The Free Software Foundation may publish revised and/or new
+versions of the General Public License from time to time. Such new
+versions will be similar in spirit to the present version, but may
+differ in detail to address new problems or concerns.
+
+Each version is given a distinguishing version number. If the Program
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+conditions either of that version or of any later version published by
+the Free Software Foundation. If the Program does not specify a
+version number of this License, you may choose any version ever
+published by the Free Software Foundation.
+
+**10.** If you wish to incorporate parts of the Program into other
+free programs whose distribution conditions are different, write to
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+we sometimes make exceptions for this. Our decision will be guided by
+the two goals of preserving the free status of all derivatives of our
+free software and of promoting the sharing and reuse of software
+generally.
+
+**NO WARRANTY**
+
+**11.** BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO
+WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW.
+EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR
+OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY
+KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
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+PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME
+THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
+
+**12.** IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN
+WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY
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+PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING
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+FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF
+SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH
+DAMAGES.
+
+END OF TERMS AND CONDITIONS
+
+## How to Apply These Terms to Your New Programs
+
+If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these
+terms.
+
+To do so, attach the following notices to the program. It is safest to
+attach them to the start of each source file to most effectively
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+the "copyright" line and a pointer to where the full notice is found.
+
+    one line to give the program's name and an idea of what it does.
+    Copyright (C) yyyy  name of author
+
+    This program is free software; you can redistribute it and/or
+    modify it under the terms of the GNU General Public License
+    as published by the Free Software Foundation; either version 2
+    of the License, or (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with this program; if not, write to the Free Software
+    Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA.
+
+Also add information on how to contact you by electronic and paper
+mail.
+
+If the program is interactive, make it output a short notice like this
+when it starts in an interactive mode:
+
+    Gnomovision version 69, Copyright (C) year name of author
+    Gnomovision comes with ABSOLUTELY NO WARRANTY; for details
+    type `show w'.  This is free software, and you are welcome
+    to redistribute it under certain conditions; type `show c' 
+    for details.
+
+The hypothetical commands \`show w' and \`show c' should show the
+appropriate parts of the General Public License. Of course, the
+commands you use may be called something other than \`show w' and
+\`show c'; they could even be mouse-clicks or menu items--whatever
+suits your program.
+
+You should also get your employer (if you work as a programmer) or
+your school, if any, to sign a "copyright disclaimer" for the program,
+if necessary. Here is a sample; alter the names:
+
+    Yoyodyne, Inc., hereby disclaims all copyright
+    interest in the program `Gnomovision'
+    (which makes passes at compilers) written 
+    by James Hacker.
+
+    signature of Ty Coon, 1 April 1989
+    Ty Coon, President of Vice
+
+This General Public License does not permit incorporating your program
+into proprietary programs. If your program is a subroutine library,
+you may consider it more useful to permit linking proprietary
+applications with the library. If this is what you want to do, use the
+[GNU Lesser General Public
+License](https://www.gnu.org/licenses/lgpl.html) instead of this
+License.
+
diff --git a/recipes/gametes/build.sh b/recipes/gametes/build.sh
new file mode 100644
index 0000000000000..89d67ad13e340
--- /dev/null
+++ b/recipes/gametes/build.sh
@@ -0,0 +1,24 @@
+#create target directory
+PACKAGE_HOME=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
+mkdir -p $PACKAGE_HOME
+
+#create bin
+BINARY_HOME=$PREFIX/bin
+mkdir -p $BINARY_HOME
+
+cd $SRC_DIR
+
+JAR_NAME=GAMETES_2.1.jar
+
+cp $JAR_NAME $PACKAGE_HOME/gametes.jar
+
+#mv wrapper script to package home 
+cp $RECIPE_DIR/gametes.py $PACKAGE_HOME
+
+#and symlink to $PREFIX/bin
+#ln -s $PACKAGE_HOME/gametes.py  ${BINARY_HOME}
+ln -s $PACKAGE_HOME/gametes.py $BINARY_HOME/gametes
+
+#chmod +x ${BINARY_HOME}
+chmod +x ${BINARY_HOME}/gametes
+
diff --git a/recipes/gametes/gametes.py b/recipes/gametes/gametes.py
new file mode 100644
index 0000000000000..99dc779a47f50
--- /dev/null
+++ b/recipes/gametes/gametes.py
@@ -0,0 +1,88 @@
+#!/usr/bin/env python
+
+import os
+import subprocess
+import sys
+from os import access, getenv, path, X_OK
+
+
+# jar file
+JAR_NAME = 'gametes.jar'
+PKG_NAME = 'gametes'
+PKG_VERSION = '2.1'
+PKG_BUILDNUM = '0'
+
+
+default_jvm_mem_opts = ['-Xms512m', '-Xmx1g']
+
+
+
+def real_dirname(in_path):
+    """Return the path to the JAR file"""
+    #realPath = os.path.dirname(os.path.realpath(in_path))
+    realPath = os.path.dirname(os.path.dirname(os.path.realpath(in_path)))
+    newPath = os.path.realpath(os.path.join(realPath, "..", "share", "{}-{}-{}".format(PKG_NAME, PKG_VERSION, PKG_BUILDNUM)))
+    return newPath
+
+
+
+def java_executable():
+    """Returns the name of the Java executable."""
+    java_home = getenv('JAVA_HOME')
+    java_bin = path.join('bin', 'java')
+    if java_home and access(os.path.join(java_home, java_bin), X_OK):
+        return os.path.join(java_home, java_bin)
+    else:
+        return "java"  # Default to using 'java' command directly
+        
+
+
+def jvm_opts(argv):
+    """Construct list of Java arguments based on our argument list.
+
+    The argument list passed in argv must not include the script name.
+    The return value is a 3-tuple lists of strings of the form:
+      (memory_options, prop_options, passthrough_options)
+    """
+
+
+    mem_opts, prop_opts, pass_args = [], [], []
+
+    for arg in argv:
+        if arg.startswith('-D') or arg.startswith('-XX'):
+            opts_list = prop_opts
+        elif arg.startswith('-Xm'):
+            opts_list = mem_opts
+        else:
+            opts_list = pass_args
+        opts_list.append(arg)
+
+    if mem_opts == [] and getenv('_JAVA_OPTIONS') is None:
+        mem_opts = default_jvm_mem_opts
+
+    return (mem_opts, prop_opts, pass_args)
+
+def main():
+    java = java_executable()
+    jar_dir = real_dirname(sys.argv[0])
+    (mem_opts, prop_opts, pass_args) = jvm_opts(sys.argv[1:])
+
+    if pass_args != [] and pass_args[0].startswith('org'):
+        jar_arg = '-cp'
+    else:
+        jar_arg = '-jar'
+
+    jar_path = os.path.join(jar_dir, JAR_NAME)
+
+    if not os.path.isfile(jar_path):
+        sys.stderr.write('GAMETES jar file not found\n')
+        sys.exit(1)
+
+    java_args = [java] + mem_opts + prop_opts + [jar_arg] + [jar_path] + pass_args
+    sys.exit(subprocess.call(java_args))
+
+
+if __name__ == '__main__':
+    main()
+
+
diff --git a/recipes/gametes/meta.yaml b/recipes/gametes/meta.yaml
new file mode 100644
index 0000000000000..6f6daf12580f6
--- /dev/null
+++ b/recipes/gametes/meta.yaml
@@ -0,0 +1,38 @@
+{% set name = "gametes" %}
+{% set version = "2.1" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+about:
+  home: https://sourceforge.net/projects/gametes/
+  license: GPL-2.0-only
+  summary: Tool for the generation of complex single SNP models
+  license_file: LICENSE
+
+
+build:
+  noarch: generic
+  number: 0
+  run_exports:
+  - {{ pin_subpackage("gametes", max_pin="x") }}
+
+source:
+  url: https://sourceforge.net/projects/gametes/files/GAMETES_2.1.jar
+  sha256: 5e38b0993f8915e3e3e4c225ce6b684455d02c6189877d6ae219d24ad69e27d7
+
+requirements:
+  run:
+    - openjdk >=17
+    - python
+  host:
+    - openjdk >=17
+    - python
+
+test:
+  commands:
+    - $(echo $(gametes -h |  grep Usage))
+
+
+
diff --git a/recipes/ganon/build_failure.linux-64.yaml b/recipes/ganon/build_failure.linux-64.yaml
deleted file mode 100644
index dd58888dbf700..0000000000000
--- a/recipes/ganon/build_failure.linux-64.yaml
+++ /dev/null
@@ -1,104 +0,0 @@
-recipe_sha: a2de07a72a0165afc0ea398c58f57f70672ea2ba5795360cbe18e9637a3a0e23  # The commit at which this recipe failed to build.
-skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
-log: |-
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/sam_file/format_sam.hpp:711:24: error: template argument 1 is invalid
-    711 |                   std::integral<std::remove_cvref_t<decltype(std::get<2>(mate))>>),
-        |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/sam_file/format_sam.hpp:717:53: error: template argument 1 is invalid
-    717 |     if constexpr (std::integral<std::remove_cvref_t<decltype(std::get<0>(mate))>> ||
-        |                                                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/sam_file/format_sam.hpp:717:24: error: template argument 1 is invalid
-    717 |     if constexpr (std::integral<std::remove_cvref_t<decltype(std::get<0>(mate))>> ||
-        |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/sam_file/format_sam.hpp:718:102: error: template argument 1 is invalid
-    718 |                   detail::is_type_specialisation_of_v<std::remove_cvref_t<decltype(std::get<0>(mate))>, std::optional>)
-        |                                                                                                      ^
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/sam_file/format_sam.hpp:718:110: error: 'optional' is not a member of 'std'
-    718 |                   detail::is_type_specialisation_of_v<std::remove_cvref_t<decltype(std::get<0>(mate))>, std::optional>)
-        |                                                                                                              ^~~~~~~~
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/sam_file/format_sam.hpp:718:110: note: 'std::optional' is defined in header '<optional>'; did you forget to '#include <optional>'?
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/sam_file/format_sam.hpp:731:99: error: 'optional' is not a member of 'std'
-    731 |                   !detail::is_type_specialisation_of_v<std::remove_reference_t<ref_id_type>, std::optional>)
-        |                                                                                                   ^~~~~~~~
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/sam_file/format_sam.hpp:731:99: note: 'std::optional' is defined in header '<optional>'; did you forget to '#include <optional>'?
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/sam_file/format_sam.hpp:761:9: error: 'ref_offset' was not declared in this scope; did you mean 'seqan3::field::ref_offset'?
-    761 |     if (ref_offset.has_value() && (ref_offset.value()  1) < 0)
-        |         ^~~~~~~~~~
-        |         seqan3::field::ref_offset
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/record.hpp:84:5: note: 'seqan3::field::ref_offset' declared here
-     84 |     ref_offset,     //!< Sequence (seqan3::field::ref_seq) relative start position (0-based), unsigned value.
-        |     ^~~~~~~~~~
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/sam_file/format_sam.hpp:786:50: error: 'flag' was not declared in this scope; did you mean 'seqan3::field::flag'?
-    786 |     stream_it.write_number(static_cast<uint16_t>(flag));
-        |                                                  ^~~~
-        |                                                  seqan3::field::flag
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/record.hpp:87:5: note: 'seqan3::field::flag' declared here
-     87 |     flag,           //!< The alignment flag (bit information), uint16_t value.
-        |     ^~~~
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/sam_file/format_sam.hpp:795:107: error: 'optional' is not a member of 'std'
-    795 |         else if constexpr (detail::is_type_specialisation_of_v<std::remove_reference_t<ref_id_type>, std::optional>)
-        |                                                                                                           ^~~~~~~~
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/sam_file/format_sam.hpp:795:107: note: 'std::optional' is defined in header '<optional>'; did you forget to '#include <optional>'?
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/sam_file/format_sam.hpp:815:28: error: 'ref_offset' was not declared in this scope; did you mean 'seqan3::field::ref_offset'?
-    815 |     stream_it.write_number(ref_offset.value_or(-1)  1);
-        |                            ^~~~~~~~~~
-        |                            seqan3::field::ref_offset
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/record.hpp:84:5: note: 'seqan3::field::ref_offset' declared here
-     84 |     ref_offset,     //!< Sequence (seqan3::field::ref_seq) relative start position (0-based), unsigned value.
-        |     ^~~~~~~~~~
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/sam_file/format_sam.hpp:818:50: error: 'mapq' was not declared in this scope; did you mean 'seqan3::field::mapq'?
-    818 |     stream_it.write_number(static_cast<unsigned>(mapq));
-        |                                                  ^~~~
-        |                                                  seqan3::field::mapq
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/record.hpp:89:5: note: 'seqan3::field::mapq' declared here
-     89 |     mapq,           //!< The mapping quality of the seqan3::field::seq alignment, usually a Phred-scaled score.
-        |     ^~~~
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/sam_file/format_sam.hpp:821:29: error: 'cigar_vector' was not declared in this scope; did you mean 'rna5_vector'?
-    821 |     if (!std::ranges::empty(cigar_vector))
-        |                             ^~~~~~~~~~~~
-        |                             rna5_vector
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/sam_file/format_sam.hpp:850:57: error: template argument 1 is invalid
-    850 |     if constexpr (std::integral<std::remove_reference_t<decltype(get<0>(mate))>>)
-        |                                                         ^~~~~~~~~~~~~~~~~~~~~~
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/sam_file/format_sam.hpp:850:24: error: template argument 1 is invalid
-    850 |     if constexpr (std::integral<std::remove_reference_t<decltype(get<0>(mate))>>)
-        |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/sam_file/format_sam.hpp:854:106: error: template argument 1 is invalid
-    854 |     else if constexpr (detail::is_type_specialisation_of_v<std::remove_reference_t<decltype(get<0>(mate))>, std::optional>)
-        |                                                                                                          ^
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/sam_file/format_sam.hpp:854:114: error: 'optional' is not a member of 'std'
-    854 |     else if constexpr (detail::is_type_specialisation_of_v<std::remove_reference_t<decltype(get<0>(mate))>, std::optional>)
-        |                                                                                                                  ^~~~~~~~
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/sam_file/format_sam.hpp:854:114: note: 'std::optional' is defined in header '<optional>'; did you forget to '#include <optional>'?
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/sam_file/format_sam.hpp:870:97: error: template argument 1 is invalid
-    870 |     if constexpr (detail::is_type_specialisation_of_v<std::remove_cvref_t<decltype(get<1>(mate))>, std::optional>)
-        |                                                                                                 ^
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/sam_file/format_sam.hpp:870:105: error: 'optional' is not a member of 'std'
-    870 |     if constexpr (detail::is_type_specialisation_of_v<std::remove_cvref_t<decltype(get<1>(mate))>, std::optional>)
-        |                                                                                                         ^~~~~~~~
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/sam_file/format_sam.hpp:870:105: note: 'std::optional' is defined in header '<optional>'; did you forget to '#include <optional>'?
-  /opt/conda/conda-bld/ganon_1686048214748/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/seqan3/io/sam_file/format_sam.hpp:890:33: error: 'tag_dict' was not declared in this scope
-    890 |     write_tag_fields(stream_it, tag_dict, separator);
-        |                                 ^~~~~~~~
-  make[2]: *** [src/CMakeFiles/ganon-build-lib.dir/build.make:90: src/CMakeFiles/ganon-build-lib.dir/ganon-build/GanonBuild.cpp.o] Error 1
-  make[1]: *** [CMakeFiles/Makefile2:122: src/CMakeFiles/ganon-build-lib.dir/all] Error 2
-  make: *** [Makefile:146: all] Error 2
-  Traceback (most recent call last):
-    File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
-      sys.exit(main())
-    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
-      call_conda_build(action, config)
-    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
-      result = api.build(
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
-      return build_tree(
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
-      packages_from_this = build(metadata, stats,
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
-      utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
-      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
-      raise subprocess.CalledProcessError(proc.returncode, _args)
-  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/ganon_1686048214748/work/conda_build.sh']' returned non-zero exit status 2.
-# Last 100 lines of the build log.
diff --git a/recipes/ganon/meta.yaml b/recipes/ganon/meta.yaml
index c785e0496564f..8138ce24f94e8 100755
--- a/recipes/ganon/meta.yaml
+++ b/recipes/ganon/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "ganon" %}
-{% set version = "1.6.0" %}
+{% set version = "2.1.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -8,45 +8,50 @@ package:
 source:
   - folder: ganon
     url: https://github.com/pirovc/{{ name }}/archive/{{ version }}.tar.gz
-    sha256: fe6e9d74ae2ce3978b2537dd6d6c17810c059b460da28b2c2edad32ff35c426a
+    sha256: bba93f9c45c922d6d309fcb81dfeddac6ef5439852ff1c48a1e6fed299e29f8b
   - folder: robin-hood-hashing
     url: https://github.com/martinus/robin-hood-hashing/archive/refs/tags/3.11.3.tar.gz
     sha256: dcf2b7fa9ef9dd0c67102d94c28e8df3effbe1845e0ed1f31f4772ca5e857fc4
     
 build:
-  number: 1
+  number: 0
   skip: True  # [py<36 or osx]
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   build:
     - make
     - {{ compiler('cxx') }}
-    - cmake >=3.14
+    - cmake >=3.4
   host:
     - bzip2
-    - seqan3 ==3.1.0
+    - seqan3 ==3.3.0
     - catch2 ==2.*
     - cxxopts >=2.2.0
     - python
-    - pandas >=1.1.0
+    - pandas >=1.2.0
     - multitax >=1.3.1
-    - genome_updater >=0.6.2
+    - genome_updater >=0.6.3
     - grep
     - coreutils
     - curl
     - diffutils
     - zlib
+    - parameterized >=0.9.0
+    - raptor ==3.*
   run:
     - bzip2
     - python
-    - pandas >=1.1.0
+    - pandas >=1.2.0
     - multitax >=1.3.1
-    - genome_updater >=0.6.2
+    - genome_updater >=0.6.3
     - grep
     - coreutils
     - curl
-    - diffutils      
+    - diffutils 
     - zlib
+    - raptor ==3.*
     
 test:
   commands:
@@ -56,11 +61,11 @@ test:
 
 about:
   home: https://github.com/pirovc/ganon
-  summary: "ganon classifies DNA sequences against large sets of genomic reference sequences efficiently"
+  summary: "ganon2 classifies genomic sequences against large sets of references efficiently,"
   description: |
-          ganon classifies DNA sequences against large sets of genomic sequences efficiently, 
-          with download and update of references (RefSeq/Genbank), taxonomic (NCBI/GTDB) and 
-          hierarchical classification, customized reporting and more
+          ganon2 classifies genomic sequences against large sets of references efficiently, 
+          with integrated download and update of databases (refseq/genbank), taxonomic profiling 
+          (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
   license: MIT License
   license_family: MIT
   license_file: {{ SRC_DIR }}/ganon/LICENSE
diff --git a/recipes/gapmm2/meta.yaml b/recipes/gapmm2/meta.yaml
new file mode 100644
index 0000000000000..d1dc84eb881d0
--- /dev/null
+++ b/recipes/gapmm2/meta.yaml
@@ -0,0 +1,46 @@
+{% set name = "gapmm2" %}
+{% set version = "23.11.3" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/gapmm2-{{ version }}.tar.gz
+  sha256: da058706e9e71a786ed6b35686a67ee53090258c8f16f7b2c07451cf85e05ddb
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - gapmm2 = gapmm2.__main__:main
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  run_exports:
+    - {{ pin_subpackage('gapmm2', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.6
+    - pip
+  run:
+    - python >=3.6
+    - mappy
+    - python-edlib
+    - natsort
+
+test:
+  imports:
+    - gapmm2
+  commands:
+    - gapmm2 --help
+
+about:
+  home: https://github.com/nextgenusfs/gapmm2
+  summary: 'gapmm2: gapped alignment using minimap2'
+  license: BSD-2-Clause
+  license_family: BSD
+  license_file: LICENSE.md
+
+extra:
+  recipe-maintainers:
+    - nextgenusfs
diff --git a/recipes/gappa/build.sh b/recipes/gappa/build.sh
index 27a186617836b..2456a7bb675f9 100644
--- a/recipes/gappa/build.sh
+++ b/recipes/gappa/build.sh
@@ -4,7 +4,7 @@ if [ "$(uname)" == Darwin ] ; then
         CXXFLAGS="$CXXFLAGS -fopenmp"
 fi
 
-make  
+make -j ${CPU_COUNT}
 
 mkdir -p $PREFIX/bin
 
diff --git a/recipes/gappa/meta.yaml b/recipes/gappa/meta.yaml
index f0fd77ade36d8..e2fc50494968b 100644
--- a/recipes/gappa/meta.yaml
+++ b/recipes/gappa/meta.yaml
@@ -3,7 +3,9 @@ package:
   version: "0.8.4"
 
 build:
-  number: 0
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('gappa', max_pin='x.x') }}
 
 source:
   url: https://github.com/lczech/gappa/archive/refs/tags/v0.8.4.tar.gz
@@ -31,5 +33,7 @@ about:
   summary: Genesis Applications for Phylogenetic Placement Analysis
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - doi:10.1093/bioinformatics/bty767
diff --git a/recipes/gapseq/build.sh b/recipes/gapseq/build.sh
new file mode 100644
index 0000000000000..5cf8ec2bdb7b9
--- /dev/null
+++ b/recipes/gapseq/build.sh
@@ -0,0 +1,41 @@
+#!/usr/bin/env bash
+
+# Installation instructions taken from https://github.com/jotech/gapseq/blob/master/docs/install.md#conda April 2024 by cmkobel
+
+# Copy contents to conda prefix
+mkdir -p ${PREFIX}/gapseq/
+cp ISSUE_TEMPLATE.MD LICENSE README.md gapseq gapseq_env.yml ${PREFIX}/gapseq/
+cp -r dat/ docs/ src/ toy/ unit/ ${PREFIX}/gapseq/
+
+
+# Installing the CRAN archived sybilSBML package here requires a bunch of debugging to set the lib paths in R. That time is probably better spend fixing the package (sybilSBML) in the first place. So here is a quick workaround that makes this process a bit easier for the user. SybilSBML is not strictly necessary so I think the priority should be to get the main package (gapseq) working first.
+echo '''#!/usr/bin/env bash
+wget https://cran.r-project.org/src/contrib/Archive/sybilSBML/sybilSBML_3.1.2.tar.gz
+R CMD INSTALL --configure-args=" \
+--with-sbml-include=$CONDA_PREFIX/include \
+--with-sbml-lib=$CONDA_PREFIX/lib" sybilSBML_3.1.2.tar.gz
+rm sybilSBML_3.1.2.tar.gz
+''' > ${PREFIX}/gapseq/src/install_archived_sybilSBML.sh
+chmod +x ${PREFIX}/gapseq/src/install_archived_sybilSBML.sh
+# Now the user can "easily" install this after installing the bioconda package with install_archived_sybilSBML.sh (This file will be linked to bin/).
+
+
+# Download reference sequence data
+# To install the database, we must call the installed file as it uses its own path to place the files correctly.
+bash ${PREFIX}/gapseq/src/update_sequences.sh
+
+
+# Final setup - Make binary available
+mkdir -p ${PREFIX}/bin
+ln -sr ${PREFIX}/gapseq/gapseq ${PREFIX}/bin/
+ln -sr ${PREFIX}/gapseq/src/update_sequences.sh ${PREFIX}/bin/
+ln -sr ${PREFIX}/gapseq/src/install_archived_sybilSBML.sh ${PREFIX}/bin/
+
+
+# --- 
+
+
+# Build at home with (before submitting to azure):
+# conda activate bioconda-utils
+# bioconda-utils lint --git-range master
+# bioconda-utils build --mulled-test --git-range master
diff --git a/recipes/gapseq/meta.yaml b/recipes/gapseq/meta.yaml
new file mode 100644
index 0000000000000..b62b67d0b8755
--- /dev/null
+++ b/recipes/gapseq/meta.yaml
@@ -0,0 +1,71 @@
+{% set version = "1.2" %}
+
+package:
+  name: gapseq
+  version: {{ version }}
+
+source:
+  url: https://github.com/jotech/gapseq/archive/refs/tags/v{{ version}}.tar.gz
+  sha256: 061799f8e0406662450dd3d8d61d824220670fb23231895deecd490a5cbdf7cf
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('gapseq', max_pin="x") }}
+  skip: True # [osx]
+
+requirements:
+  run:
+    - r-base
+    - perl
+    - parallel
+    - gawk
+    - sed
+    - grep
+    - bc
+    - git
+    - coreutils
+    - wget
+    - openssl
+    - barrnap
+    - bedtools
+    - exonerate
+    - glpk
+    - hmmer
+    - blast
+    - libsbml 
+    - r-data.table
+    - r-stringr
+    - r-stringi
+    - r-getopt
+    - r-doParallel
+    - r-foreach
+    - r-r.utils
+    - r-sybil
+    - r-biocmanager
+    - bioconductor-biostrings
+    - r-jsonlite
+    - r-renv
+    - r-glpkapi
+    - r-rcurl
+    - r-httr
+    - r-chnosz
+  build: 
+    - wget
+
+test:
+  commands:
+    - gapseq test
+
+about:
+  home: https://github.com/jotech/gapseq
+  summary: Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks 
+  license_family: GPL
+  license: AGPL-3.0-only
+  license_file: LICENSE
+extra:
+  skip-lints:
+    - should_be_noarch_generic
+  recipe-maintainers:
+    - cmkobel
+
diff --git a/recipes/gatk/meta.yaml b/recipes/gatk/meta.yaml
index 77decd93b1470..cc2a442f6d1b3 100644
--- a/recipes/gatk/meta.yaml
+++ b/recipes/gatk/meta.yaml
@@ -11,7 +11,9 @@ package:
 
 build:
   noarch: generic
-  number: 11
+  number: 12
+  run_exports:
+    - {{ pin_subpackage("gatk", max_pin="x") }}  
 
 source:
     url: https://storage.googleapis.com/gatk-software/package-archive/gatk/GenomeAnalysisTK-3.8-1-0-gf15c1c3ef.tar.bz2
diff --git a/recipes/gatk4/meta.yaml b/recipes/gatk4/meta.yaml
index 5e77a8f9a2ef8..f588a9884779c 100644
--- a/recipes/gatk4/meta.yaml
+++ b/recipes/gatk4/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "GATK4" %}
-{% set version = "4.4.0.0" %}
-{% set sha256 = "444600f7b38b46ad0b3606b7d40ce921e0ff1910a50165872f1c73c7c4a1a390" %}
+{% set version = "4.5.0.0" %}
+{% set sha256 = "dc1a4471e8bb566397db9894ca18acbf8f40f3fc312c8fad9a8c5390c218e916" %}
 
 package:
   name: {{ name|lower }}
@@ -13,24 +13,26 @@ source:
 build:
   noarch: generic
   number: 0
+  run_exports:
+     - {{ pin_subpackage('gatk4', max_pin="x") }}
 
 requirements:
   host:
-    - r-base
+    - r-base =3.6
     - r-gplots
     - r-ggplot2
     - r-gsalib
     - r-reshape
-    - gcnvkernel
+    - gcnvkernel =0.8
   run:
     - openjdk >=17,<18
     - python
-    - r-base
+    - r-base =3.6
     - r-gplots
     - r-ggplot2
     - r-gsalib
     - r-reshape
-    - gcnvkernel
+    - gcnvkernel =0.8
 
 test:
   commands:
diff --git a/recipes/gb-io/build.sh b/recipes/gb-io/build.sh
new file mode 100644
index 0000000000000..a8f3305257de7
--- /dev/null
+++ b/recipes/gb-io/build.sh
@@ -0,0 +1,12 @@
+#!/bin/bash -e
+
+set -ex
+
+# Use a custom temporary directory as home on macOS.
+# (not sure why this is useful, but people use it in bioconda recipes)
+if [ `uname` == Darwin ]; then
+  export HOME=`mktemp -d`
+fi
+
+# build statically linked binary with Rust
+$PYTHON -m pip install . --no-deps --no-build-isolation -vvv
diff --git a/recipes/gb-io/meta.yaml b/recipes/gb-io/meta.yaml
new file mode 100644
index 0000000000000..e346cc5b35e5a
--- /dev/null
+++ b/recipes/gb-io/meta.yaml
@@ -0,0 +1,37 @@
+{% set name = "gb-io" %}
+{% set version = "0.3.2" %}
+
+package:
+  name: "{{ name }}"
+  version: "{{ version }}"
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('gb-io', max_pin="x.x") }}
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: 5bf0a5b2755e5e4aa928184043a44c28e2658158965901abb003ede8c794ad6e
+
+requirements:
+  build:
+    - {{ compiler('rust') }}
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+  host:
+    - pip
+    - python
+    - setuptools-rust
+  run:
+    - python
+
+test:
+  imports:
+    - gb_io
+
+about:
+  home: https://github.com/althonos/gb-io.py
+  license: MIT
+  license_file: COPYING
+  summary: A Python interface to gb-io, a fast GenBank parser and serializer written in Rust.
diff --git a/recipes/gcnvkernel/meta.yaml b/recipes/gcnvkernel/meta.yaml
index da4ef22df24e6..f8c6448ea98bb 100644
--- a/recipes/gcnvkernel/meta.yaml
+++ b/recipes/gcnvkernel/meta.yaml
@@ -1,7 +1,7 @@
 {% set name = "gcnvkernel" %}
 {% set version = "0.8" %}
-{% set gatk_version = "4.3.0.0" %}
-{% set gatk_sha256 = "e2c27229b34c3e22445964adf00639a0909887bbfcc040f6910079177bc6e2dd" %}
+{% set gatk_version = "4.5.0.0" %}
+{% set gatk_sha256 = "dc1a4471e8bb566397db9894ca18acbf8f40f3fc312c8fad9a8c5390c218e916" %}
 
 package:
   name: {{ name|lower }}
@@ -13,7 +13,9 @@ source:
 
 build:
   noarch: python
-  number: 0
+  number: 1
+  run_exports:
+     - {{ pin_subpackage('gcnvkernel', max_pin="x") }}
 
 requirements:
   build:
@@ -24,17 +26,17 @@ requirements:
     #
     # https://github.com/broadinstitute/gatk/blob/master/scripts/gatkcondaenv.yml.template
     - conda-forge::python =3.6.10
-    - pip =20.0.2
+    - pip =21.3.1
     - conda-forge::mkl =2019.5
     - conda-forge::mkl-service =2.3.0
     - conda-forge::numpy =1.17.5
     - conda-forge::theano =1.0.4
-    - defaults::tensorflow =1.15.0
+    - tensorflow <2
     - conda-forge::scipy =1.0.0
     - conda-forge::pymc3 =3.1
     - conda-forge::h5py =2.10.0 
     - conda-forge::keras =2.2.4
-    - defaults::intel-openmp =2019.4
+    - conda-forge::intel-openmp
     - conda-forge::scikit-learn =0.23.1
     - conda-forge::matplotlib =3.2.1
     - conda-forge::pandas =1.0.3
diff --git a/recipes/gdmicro/meta.yaml b/recipes/gdmicro/meta.yaml
new file mode 100644
index 0000000000000..27718cb32aaea
--- /dev/null
+++ b/recipes/gdmicro/meta.yaml
@@ -0,0 +1,54 @@
+{% set name = "gdmicro" %}
+{% set version = "1.0.10" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: d71dd9b5fdaf1e88b97374d16462b00381242fd2830b5a0b7b5d62bfaca9e4f6
+
+build:
+  number: 0
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+      - {{ pin_subpackage('gdmicro', max_pin="x") }}
+  entry_points:
+    - gdmicro = GDmicro.GDmicro:main
+  noarch: python
+
+requirements:
+  host:
+    - pip
+    - python ==3.7.3
+  run:
+    - python ==3.7.3
+    - numpy
+    - pandas
+    - scipy
+    - scikit-learn
+    - pytorch ==1.12.0
+    - networkx ==2.6.3
+    - matplotlib-base
+    - ipython
+    - r-base ==3.6.1
+    - bioconductor-siamcat ==1.6.0
+    - r-yaml ==2.2.1
+    - r-tidyverse ==1.2.1
+
+test:
+    imports:
+         - GDmicro
+    commands:
+         - gdmicro --help
+
+about:
+  home: https://github.com/liaoherui/GDmicro
+  license: MIT
+  license_family: MIT
+  summary: GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data
+
+extra:
+  recipe-maintainers:
+    - liaoherui
diff --git a/recipes/gecco/meta.yaml b/recipes/gecco/meta.yaml
index 6dec56a044f8e..34a6b65a20e38 100644
--- a/recipes/gecco/meta.yaml
+++ b/recipes/gecco/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "GECCO" %}
 {% set name_pypi = "gecco-tool" %}
-{% set version = "0.9.8" %}
+{% set version = "0.9.10" %}
 
 package:
   name: "{{ name|lower }}"
@@ -8,12 +8,14 @@ package:
 
 source:
   url: https://pypi.org/packages/source/g/{{ name_pypi }}/{{ name_pypi }}-{{ version }}.tar.gz
-  sha256: 4d67a654e84258c574ec1e3506ea1411c2ffa2d8b1abac41c198bb276edd4626
+  sha256: 6ab405587824228a2a2baa08ccb9e6df1f6df214fe6c1a531b778a613fb1e90d
 
 build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vvv "
+  run_exports:
+    - {{ pin_subpackage("gecco", max_pin="x.x") }}
 
 requirements:
   host:
@@ -34,8 +36,8 @@ requirements:
     - numpy >=1.16
     - polars >=0.16.1
     - psutil >=5.8
-    - pyhmmer >=0.8.0
-    - pyrodigal >=2.1.0
+    - pyhmmer >=0.10.0
+    - pyrodigal >=3.0
     - rich >=12.4.0
     - scikit-learn >=1.0
     - scipy >=1.4
diff --git a/recipes/gemf_favites/build.sh b/recipes/gemf_favites/build.sh
new file mode 100644
index 0000000000000..f3ceea26ca6f1
--- /dev/null
+++ b/recipes/gemf_favites/build.sh
@@ -0,0 +1,5 @@
+#!/bin/bash
+
+mkdir -p ${PREFIX}/bin
+make CC=${CC}
+cp GEMF GEMF_FAVITES.py ${PREFIX}/bin
diff --git a/recipes/gemf_favites/meta.yaml b/recipes/gemf_favites/meta.yaml
new file mode 100644
index 0000000000000..12f628887e00f
--- /dev/null
+++ b/recipes/gemf_favites/meta.yaml
@@ -0,0 +1,39 @@
+{% set version = "1.0.3" %}
+
+package:
+  name: gemf_favites
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('gemf_favites', max_pin="x.x.x") }}
+
+source:
+  url: https://github.com/niemasd/GEMF/archive/refs/tags/{{ version }}.tar.gz
+  sha256: 6a342852ff196501022d8814eb86a76fcb1d4ef1c2405ef24e8f4c79e2e1edf5
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - make
+  run:
+    - python >=3.7
+
+about:
+  home: https://github.com/niemasd/GEMF
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE
+  summary: User-friendly epidemic simulations
+  dev_url: https://github.com/niemasd/GEMF
+
+test:
+  commands:
+    - GEMF_FAVITES.py -h | grep "usage:"
+
+extra:
+  identifiers:
+    - biotools:gemf_favites
+  recipe-maintainers:
+    - niemasd
diff --git a/recipes/gemini/meta.yaml b/recipes/gemini/meta.yaml
index 58e594f5761c1..4208619313276 100644
--- a/recipes/gemini/meta.yaml
+++ b/recipes/gemini/meta.yaml
@@ -6,9 +6,10 @@ package:
   version: {{ version }}
 
 build:
-  number: 5
-  skip: True # [not py27]
+  number: 6
   script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 source:
   url: https://github.com/arq5x/gemini/archive/v{{ version }}.tar.gz
@@ -19,12 +20,11 @@ requirements:
     - {{ compiler('c') }}
   host:
     - pip
-    - python
+    - python >=3.8
     - setuptools
     - bcolz
     - bottle
     - bx-python
-    - cyordereddict
     - cython
     - cyvcf2 >0.6.5
     - geneimpacts
@@ -38,18 +38,17 @@ requirements:
     - openpyxl
     - pandas
     - pybedtools
-    - pysam
+    - pysam >=0.22
     - pyyaml
     - scipy
     - unidecode
     - snappy
     - python-snappy
   run:
-    - python
+    - python >=3.8
     - bcolz
     - bottle
     - bx-python
-    - cyordereddict
     - cyvcf2 >0.6.5
     - geneimpacts
     - inheritance
@@ -63,7 +62,7 @@ requirements:
     - openpyxl
     - pandas
     - pybedtools
-    - pysam
+    - pysam >=0.22
     - pyyaml
     - scipy
     - unidecode
@@ -84,6 +83,8 @@ about:
   summary: a lightweight db framework for disease and population genetics.
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:GEMINI
     - doi:10.1371/journal.pcbi.1003153
diff --git a/recipes/genbank/meta.yaml b/recipes/genbank/meta.yaml
new file mode 100644
index 0000000000000..d5a0c8f267aad
--- /dev/null
+++ b/recipes/genbank/meta.yaml
@@ -0,0 +1,37 @@
+{% set name = "genbank" %}
+{% set version = "0.110" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/genbank-{{ version }}.tar.gz
+  sha256: f9a6ba243d62934e9e5ed283d8b475ab3dd9a3760ba329a054d5f6df54a8ec45
+
+build:
+  number: 0
+  skip: True  # [py < 36]
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  run_exports:
+    - {{ pin_subpackage('genbank', max_pin="x.x") }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+  host:
+    - python
+    - pip
+  run:
+    - python
+
+test:
+  imports:
+    - genbank
+
+about:
+  home: https://github.com/deprekate/genbank
+  summary: Code to work with Genbank files
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE
diff --git a/recipes/gencove/meta.yaml b/recipes/gencove/meta.yaml
index f0b9b53191a14..4f89bdef799e2 100644
--- a/recipes/gencove/meta.yaml
+++ b/recipes/gencove/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "2.5.2" %}
-{% set sha256 = "8888cfa213022e014a5ae8585b63b1d798e54f4f1603f8e720017995c8d085fd" %}
+{% set version = "2.8.1" %}
+{% set sha256 = "bcda1ddbea0bf4b14e343c6e11e88755f41b8fd1df9225ac55993b438bb45c32" %}
 
 package:
   name: gencove
@@ -12,15 +12,18 @@ source:
 build:
   noarch: python
   number: 0
-  script: '$PYTHON -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv '
+  script: '{{ PYTHON }} -m pip install . --use-pep517 --no-deps --ignore-installed --no-cache-dir -vvv'
+  entry_points:
+    - gencove = gencove.cli:cli
+  run_exports:
+    - {{ pin_subpackage("gencove", max_pin="x") }}
 
 requirements:
-  build:
-    - pip
-    - setuptools
   host:
     - python >=3.7
+    - pip
     - pytest-runner
+    - setuptools
   run:
     - python >=3.7
     - python-dateutil >=2.2.0
@@ -42,6 +45,8 @@ about:
   license: Apache-2.0
   license_file: LICENSE
   summary: Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis. This command-line interface can be used to easily access the Gencove API.
+  dev_url: https://github.com/gncv/gencove-cli
+  doc_url: https://docs.gencove.com
 
 extra:
   recipe-maintainers:
diff --git a/recipes/generax/meta.yaml b/recipes/generax/meta.yaml
index 6463eb3db5c99..0c662c20d3c3d 100644
--- a/recipes/generax/meta.yaml
+++ b/recipes/generax/meta.yaml
@@ -1,6 +1,7 @@
 {% set name = "generax" %}
-{% set version = "2.0.4" %}
- 
+{% set version = "2.1.3" %}
+
+
 package:
   name: {{ name|lower }}
   version: {{ version }}
@@ -9,12 +10,11 @@ source:
   git_url: https://github.com/benoitmorel/{{ name|lower }}.git
   git_rev: {{ version }}
   sha256: unused
-  patches:
-    - patch
 
 build:
-  number: 3
-
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('generax', max_pin="x") }}
 requirements:
   build:
     - make
diff --git a/recipes/generax/patch b/recipes/generax/patch
deleted file mode 100644
index 20728f85402ef..0000000000000
--- a/recipes/generax/patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff --git a/src/core/IO/Model.hpp b/src/core/IO/Model.hpp
-index 0eb6ce1..3a16942 100644
---- a/src/core/IO/Model.hpp
-+++ b/src/core/IO/Model.hpp
-@@ -6,6 +6,7 @@
- 
- #include <algorithm>
- #include <unordered_map>
-+#include <stdexcept>
- extern "C" {
- #include <pll.h>
- #include <pllmod_algorithm.h>
diff --git a/recipes/genewalk/meta.yaml b/recipes/genewalk/meta.yaml
index f54b7778327a2..969b33e9b8222 100644
--- a/recipes/genewalk/meta.yaml
+++ b/recipes/genewalk/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "genewalk" %}
-{% set version = "1.6.1" %}
+{% set version = "1.6.2" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,14 +7,16 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: "847cabfe7fea2efe869f314b7a721fe02ba85df35cf992dade8f74891052b777"
+  sha256: "e989c20ef9c5ef5a6de0b495cc6f8ee4490ab9ebbdd2634e03cf77dfdec44b10"
 
 build:
   number: 0
   noarch: python
   entry_points: 
     - genewalk = genewalk.cli:main
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage('genewalk', max_pin="x") }}
 
 requirements:
   host:
@@ -27,9 +29,9 @@ requirements:
     - numpy
     - pandas
     - python
-    - scipy >=1.3.0
+    - scipy <1.13
     - matplotlib-base
-    - seaborn
+    - seaborn-base
     - plotly >=4.0.0
 
 test:
diff --git a/recipes/genmod/meta.yaml b/recipes/genmod/meta.yaml
index 51dbf72fb873b..4b226e225aa97 100644
--- a/recipes/genmod/meta.yaml
+++ b/recipes/genmod/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "genmod" %}
-{% set version = "3.7.4" %}
+{% set version = "3.8.2" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,29 +7,24 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: a45d0a197ac5cfa5d3df50cf415a0c9e91e7ab4cd5778077779eb8f6c29664e8
+  sha256: 72921cce29fd8d6b99eea76921a0a71d3846abcb92bcb02dafd24886ab9264a3
 
 build:
   number: 0
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('genmod', max_pin="x") }}
   entry_points:
     - genmod = genmod.commands.base:cli
-  script: "{{ PYTHON }} -m pip install . --no-deps -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
 
 requirements:
   host:
-    - click <7
-    - configobj
-    - extract_vcf >=0.4.2
-    - interval_tree >=0.3.2
-    - intervaltree
-    - ped_parser >=1.6.2
     - pip
-    - pytabix
-    - pytest
-    - python
+    - python 3.8.*
+    - pypandoc <1.8
   run:
-    - click <7
+    - click >=8.1.3
     - configobj
     - extract_vcf >=0.4.2
     - interval_tree >=0.3.2
@@ -37,7 +32,8 @@ requirements:
     - ped_parser >=1.6.2
     - pytabix
     - pytest
-    - python
+    - python 3.8.*
+    - vcftoolbox >=1.5.1
 
 test:
   imports:
@@ -59,7 +55,7 @@ about:
   home: "http://github.com/moonso/genmod"
   license: MIT
   license_family: MIT
-  license_file: 
+  license_file: LICENSE.txt
   summary: "Annotate genetic inheritance models in variant files"
 
 extra:
diff --git a/recipes/geno2phenotb/meta.yaml b/recipes/geno2phenotb/meta.yaml
index 9cc9d7ecffdd0..aab586a23d203 100644
--- a/recipes/geno2phenotb/meta.yaml
+++ b/recipes/geno2phenotb/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "1.0.0" %}
-{% set sha256 = "a1c1778761992f40f15c25efb2601118d0e6c7b53c17a697a290189393bbf146" %}
+{% set version = "1.0.1" %}
+{% set sha256 = "c1c3c06e5b87d5eabd7f75b33d86e870ac52fe04025a382b40049212f5e3ee25" %}
 
 package:
   name: geno2phenotb
@@ -10,40 +10,53 @@ source:
   sha256: "{{ sha256 }}"
 
 build:
-  noarch: python
   number: 0
-  script: python -m pip install --no-deps --ignore-installed .
+  noarch: python
+  script: {{ PYTHON }} -m pip install --no-deps --ignore-installed .
 
 requirements:
   host:
-    - python =3.7.15
+    - python =3.8.17
     - pip
-    - setuptools =65.5.0
+    - setuptools
   run:
     - bwa =0.7.17
     - gatk =3.8
     - imbalanced-learn =0.8.1
-    - joblib =1.1.1
+    - joblib =1.2
     - mtbseq =1.0.4
     - numpy =1.21.5
-    - numpy-base =1.21.5
-    - packaging =21.3
+    - packaging =21
     - pandas =0.25.3
     - perl-base =2.23
-    - python =3.7.15
+    - python =3.8.17
+    - requests =2
     - samtools =1.6
     - scikit-learn =0.24.2
     - scipy =1.7.3
-    - setuptools =65.5.0
+    - setuptools
+    - tqdm =4
     - importlib_metadata
-    - wheel =0.37.1
+    - wheel =0.37
 
 test:
   imports:
     - geno2phenotb
+  commands:
+    - geno2phenotb --help
+    - geno2phenotb test -f
 
 about:
   home: https://github.com/msmdev/geno2phenoTB
   license: LGPL-3.0-only
   license_file: LICENSE.txt
-  summary: Machine learning based engine to predict Mycobacterium tuberculosis drug resistance using whole-genome sequencing data
+  summary: Prediction of Mycobacterium tuberculosis drug resistance from WGS data
+  description: |
+    geno2phenoTB is a machine learning based tool to predict resistance of Mycobacterium tuberculosis against antibiotics using whole-genome sequencing data.
+  doc_url: https://geno2phenotb.readthedocs.io/en/latest
+  dev_url: https://github.com/msmdev/geno2phenoTB
+
+extra:
+  recipe-maintainers:
+    - msmdev
+    - not_a_feature
diff --git a/recipes/genoboo/build.sh b/recipes/genoboo/build.sh
index 76a76236e8b16..d42cfaa60bf28 100644
--- a/recipes/genoboo/build.sh
+++ b/recipes/genoboo/build.sh
@@ -11,17 +11,20 @@ export ARCH=$(uname -m)
 export HOME="$(mktemp -d)"
 
 # Install meteor here (instead of in npm run bundle) because we need to patch the install script
-curl "https://install.meteor.com/?release=2.8.0" > meteor.sh
+curl "https://install.meteor.com/?release=2.13.3" > meteor.sh
 chmod a+x meteor.sh
 sed -i.bak 's|PREFIX=|#PREFIX=|' meteor.sh
 ./meteor.sh
 
+sed -i.bak 's/"preinstall".*/"preinstall":"",/g' package.json
+
 npm install --unsafe-perm
 
 export PATH=$PATH:"$HOME/.meteor"
 
 # Now run the normal gnb install
-METEOR_ALLOW_SUPERUSER=1 METEOR_DISABLE_OPTIMISTIC_CACHING=1 npm run bundle
+
+TOOL_NODE_FLAGS="--max-old-space-size=2048" METEOR_ALLOW_SUPERUSER=1 METEOR_DISABLE_OPTIMISTIC_CACHING=1 npm run bundle
 
 cp -R genoboo_v${PKG_VERSION}/* $outdir
 
diff --git a/recipes/genoboo/meta.yaml b/recipes/genoboo/meta.yaml
index 301d6aea94366..b7eabb53df9ac 100644
--- a/recipes/genoboo/meta.yaml
+++ b/recipes/genoboo/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = 'genoboo' %}
-{% set version = '0.4.4' %}
-{% set sha256 = 'e6b11ad2b710ad0042b2b496185792d762cd9ac67f7e21d50a3c03d8927baa0f' %}
+{% set version = '0.4.15' %}
+{% set sha256 = 'af315b785b5bf849b1ab859fb56a0fc91dd8dadae130636e8ecc5c99be33c792' %}
 
 package:
   name: {{ name|lower }}
@@ -10,22 +10,24 @@ source:
   url: https://github.com/gogepp/genoboo/archive/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
 
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('genoboo', max_pin="x") }}
+
 requirements:
+  build:
+    - {{ compiler('cxx') }}
+    - make
   host:
     - jq
     - nodejs >=15, <16
     - python >=3
-  build:
-    - {{ compiler('cxx') }}
-    - make
   run:
     - blast
     - nodejs >=15, <16
     - mongodb >=5.0
 
-build:
-  number: 0
-
 test:
   commands:
     - genoboo -v
diff --git a/recipes/genoflu/meta.yaml b/recipes/genoflu/meta.yaml
index 9b8cdc7c00314..4086881aa0d61 100644
--- a/recipes/genoflu/meta.yaml
+++ b/recipes/genoflu/meta.yaml
@@ -1,8 +1,8 @@
 {% set user = "USDA-VS" %}
 {% set name = "GenoFLU" %}
 
-{% set version = "1.01" %}
-{% set sha256 = "c97ad073c2cf14f1c14f1a705ddc3817189c30f03239ba97b068a1ddab90ceb8" %}
+{% set version = "1.03" %}
+{% set sha256 = "fe814ff8e256b57e32a3398d4c16d449eb6222cbb02869bd876534484c5b070e" %}
 
 package:
   name: {{ name|lower }}
@@ -11,6 +11,8 @@ package:
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('genoflu', max_pin="x") }}
 
 source:
   url: https://github.com/{{ user }}/{{ name }}/archive/{{ version }}.tar.gz
@@ -30,7 +32,7 @@ test:
 
 about:
   home: https://github.com/{{ user }}/{{ name }}
-  license: GPL3
+  license: GPL-3.0-or-later
   license_file: LICENSE
   summary: Influenza data pipeline to automate genotyping assignment.
-  dev_url: https://github.com/USDA-VS/GenoFLU
\ No newline at end of file
+  dev_url: https://github.com/USDA-VS/GenoFLU
diff --git a/recipes/genomad/meta.yaml b/recipes/genomad/meta.yaml
index c5ced4b156ca3..206a6bcb905ee 100644
--- a/recipes/genomad/meta.yaml
+++ b/recipes/genomad/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "genomad" %}
-{% set version = "1.5.2" %}
+{% set version = "1.8.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,14 +7,16 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 683d00c448770a9c08a75e5245efce870a155c5335a3661a24c2e2441eaef0b6
+  sha256: 631599f9fea8ea8d07bdc9334e0fc328aed1274968da78f6f5854c0146022233
 
 build:
-  number: 0
+  number: 1
   noarch: python
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
   entry_points:
     - genomad=genomad.cli:cli
+  run_exports:
+    - {{ pin_subpackage("genomad", max_pin="x") }}
 
 requirements:
   host:
@@ -23,16 +25,16 @@ requirements:
     - flit-core >=3.2,<4
   run:
     - python >=3.8
-    - prodigal-gv >=2.7.0
+    - pyrodigal-gv >=0.3.1
     - mmseqs2 =14.7e284
     - aragorn
-    - keras >=2.7
-    - numba
-    - numpy <1.24
+    - keras >=2.7,<3
+    - numba >=0.57
+    - numpy >=1.21
     - python-crfsuite
     - rich-click >=1.4
     - taxopy >=0.4.0
-    - tensorflow >=2.7
+    - tensorflow >=2.7,<2.16
     - xgboost >=1.6
 
 test:
@@ -46,3 +48,8 @@ about:
   license_file: LICENSE
   summary: "Identification of mobile genetic elements"
   dev_url: https://github.com/apcamargo/genomad/
+  doc_url: https://portal.nersc.gov/genomad/
+
+extra:
+  identifiers:
+    - biotools:genomad
diff --git a/recipes/genome_updater/meta.yaml b/recipes/genome_updater/meta.yaml
index 73918265bbcfd..3aa455d57c492 100755
--- a/recipes/genome_updater/meta.yaml
+++ b/recipes/genome_updater/meta.yaml
@@ -11,7 +11,7 @@ source:
 
     
 build:
-  number: 0
+  number: 1
   noarch: generic
 
 requirements:
@@ -22,6 +22,8 @@ requirements:
     - gawk
     - coreutils
     - wget
+    - findutils
+    - curl
 
 test:
   commands:
diff --git a/recipes/genomedata/build.sh b/recipes/genomedata/build.sh
index b53be74eadecd..29ed708237cbf 100644
--- a/recipes/genomedata/build.sh
+++ b/recipes/genomedata/build.sh
@@ -6,7 +6,7 @@ export HDF5_DIR=$PREFIX
 export CPPFLAGS='-D_FORTIFY_SOURCE=2 -O2'
 export LD_LIBRARY_PATH=$PREFIX/lib
 
-$PYTHON -m pip install -vv --disable-pip-version-check --no-deps --no-cache-dir --ignore-installed . 
+$PYTHON -m pip install -vvv --disable-pip-version-check --no-deps --no-cache-dir --no-build-isolation .
 # Work around for no 'source_files' support in test section of meta.yaml
 cp test/run_tests.py $PREFIX/bin/run_genomedata_tests.py
 cp test/test_genomedata.py $PREFIX/bin
diff --git a/recipes/genomedata/meta.yaml b/recipes/genomedata/meta.yaml
index eaf9c8531b343..c79e56a3185bc 100644
--- a/recipes/genomedata/meta.yaml
+++ b/recipes/genomedata/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "genomedata" %}
-{% set version = "1.6.0" %}
-{% set sha256 = "72f15fb8dc595b680e5c24855d7bff3fc0a523c838b4c27c2be074aab6ef9feb" %}
+{% set version = "1.7.2" %}
+{% set sha256 = "588efabd6a163af059e945aa6c638b9e9129ab46f27c4a35baafdbfb5f7edbbd" %}
 
 package:
   name: {{ name|lower }}
@@ -9,10 +9,25 @@ package:
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
   sha256: {{ sha256 }}
-  
+
 build:
-  skip: True  # [osx or py < 37]
-  number: 1
+  skip: True  # [osx or py < 39]
+  number: 0
+  entry_points:
+    - genomedata-close-data = genomedata._close_data:main
+    - genomedata-erase-data = genomedata._erase_data:main
+    - genomedata-hardmask = genomedata._hardmask:main
+    - genomedata-histogram = genomedata._histogram:main
+    - genomedata-info = genomedata._info:main
+    - genomedata-load = genomedata.load_genomedata:main
+    - genomedata-load-assembly = genomedata._load_seq:main
+    - genomedata-load-data = genomedata._load_data:main
+    - genomedata-load-seq = genomedata._load_seq:main
+    - genomedata-open-data = genomedata._open_data:main
+    - genomedata-query = genomedata._query:main
+    - genomedata-report = genomedata._report:main
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   build:
@@ -30,6 +45,7 @@ requirements:
     - six
     - hdf5
     - pytables >=3.4.3
+    - pybigwig
     - path.py
     - textinput
     - bedtools
@@ -59,8 +75,12 @@ test:
 
 about:
   home: http://genomedata.hoffmanlab.org/
-  license: GPL2
-  summary: 'tools for accessing large amounts of genomic data'
+  license: GPL-2.0
+  license_family: GPL2
+  license_file: LICENSE
+  summary: 'Tools for accessing large amounts of genomic data'
+  doc_url: https://genomedata.readthedocs.io/en/latest/
+  dev_url: https://github.com/hoffmangroup/genomedata
 
 extra:
   identifiers:
diff --git a/recipes/genomepy/meta.yaml b/recipes/genomepy/meta.yaml
index 87a26d0ebd98b..f82088f838ea9 100644
--- a/recipes/genomepy/meta.yaml
+++ b/recipes/genomepy/meta.yaml
@@ -9,9 +9,11 @@ source:
   sha256: c550e32fbafd67ae4ce3792356459fd6658de70ab8820a735a8a815238643be9
 
 build:
-  number: 0
+  number: 1
   noarch: python
   script: {{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv
+  run_exports:
+    - {{ pin_subpackage('genomepy', max_pin="x.x") }}
   
 requirements:
   host:
diff --git a/recipes/genometools-genometools/build.sh b/recipes/genometools-genometools/build.sh
index 69fc98e90cf4c..7ca485d42ac66 100644
--- a/recipes/genometools-genometools/build.sh
+++ b/recipes/genometools-genometools/build.sh
@@ -9,7 +9,7 @@ if [[ "$(uname)" == Darwin ]]; then
     LIBS="LIBS=-lc"
 fi
 
-make ${CAIRO_OPT} ${LIBS} errorcheck=no
+make ${CAIRO_OPT} ${LIBS} errorcheck=no -j ${CPU_COUNT}
 export prefix=$PREFIX
 make ${CAIRO_OPT} install 
 
diff --git a/recipes/genometools-genometools/meta.yaml b/recipes/genometools-genometools/meta.yaml
index dafee02825f16..63ecad35f6ab6 100644
--- a/recipes/genometools-genometools/meta.yaml
+++ b/recipes/genometools-genometools/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "genometools" %}
-{% set version = "1.6.2" %}
-{% set sha256 = "974825ddc42602bdce3d5fbe2b6e2726e7a35e81b532a0dc236f6e375d18adac" %}
+{% set version = "1.6.5" %}
+{% set sha256 = "f71b95c84761847223cd52a17d30ad9e6d55854448c2139fcd0aac437f73fbbe" %}
 
 package:
   name: {{ name }}-{{ name }}
@@ -12,7 +12,9 @@ source:
 
 build:
   skip: true  # [py2k]
-  number: 6
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('genometools-genometools', max_pin="x") }}
 
 requirements:
   build:
@@ -49,6 +51,8 @@ about:
   doc_url: http://genometools.org/documentation.html
   dev_url: https://github.com/genometools/genometools
 extra:
+  additional-platforms:
+    - linux-aarch64
   recipe-maintainers:
     - notestaff
   identifiers:
diff --git a/recipes/genomic_address_service/meta.yaml b/recipes/genomic_address_service/meta.yaml
new file mode 100644
index 0000000000000..6eea935428e20
--- /dev/null
+++ b/recipes/genomic_address_service/meta.yaml
@@ -0,0 +1,53 @@
+{% set name = "genomic_address_service" %}
+{% set version = "0.1.1" %}
+{% set sha256 = "5aa088e063190561f09c8d5f66f54af5a2c7561e2ad24eaf41055e56331b2954" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/genomic_address_service-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+  
+
+build:
+  number: 1
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage("genomic_address_service", max_pin="x.x") }}
+  script: {{ PYTHON }} -m pip install . --use-pep517 --no-deps -vvv
+  entry_points:
+    - gas=genomic_address_service.main:main
+
+requirements:
+  host:
+    - python
+    - pip
+    - pytest-runner
+  run:
+    - python >=3.8,<4
+    - {{ pin_compatible('numpy') }}
+    - pyarrow >=12.0.0
+    - fastparquet >=2023.4.0
+    - numba
+    - pytables >=3.8.0
+    - six >=1.16.0
+    - pandas >=2.0.2
+    - scipy
+    - psutil
+
+test:
+  imports:
+    - genomic_address_service
+  commands:
+    - gas -h
+
+about:
+  home: 'https://pypi.org/project/genomic-address-service'
+  summary: 'Genomic Address Service: De novo clustering and cluster address assignment'
+  license: Apache-2.0
+  license_file: LICENSE
+  dev_url: 'https://github.com/phac-nml/genomic_address_service'
+
+
diff --git a/recipes/genotyphi/build.sh b/recipes/genotyphi/build.sh
index c55dac43f810f..3d0a5d709d8f4 100644
--- a/recipes/genotyphi/build.sh
+++ b/recipes/genotyphi/build.sh
@@ -6,7 +6,7 @@ ln $PREFIX/bin/genotyphi.py $PREFIX/bin/genotyphi
 chmod +x $PREFIX/bin/genotyphi.py $PREFIX/bin/genotyphi
 
 # Add script for Mykrobe based analysis
-wget -O parse_typhi_mykrobe.py https://github.com/katholt/genotyphi/raw/main/parse_typhi_mykrobe.py
+wget -O parse_typhi_mykrobe.py https://raw.githubusercontent.com/typhoidgenomics/genotyphi/main/typhimykrobe/parse_typhi_mykrobe.py
 echo "#! /usr/bin/env python" > $PREFIX/bin/parse_typhi_mykrobe.py
 cat parse_typhi_mykrobe.py >> $PREFIX/bin/parse_typhi_mykrobe.py
 chmod 755 $PREFIX/bin/parse_typhi_mykrobe.py
diff --git a/recipes/genotyphi/meta.yaml b/recipes/genotyphi/meta.yaml
index c8a1d17676d4e..010e90af15eb0 100644
--- a/recipes/genotyphi/meta.yaml
+++ b/recipes/genotyphi/meta.yaml
@@ -7,12 +7,14 @@ package:
   version: {{ version }}
 
 source:
-  url: https://github.com/katholt/genotyphi/archive/v{{ version }}.tar.gz
+  url: https://github.com/typhoidgenomics/genotyphi/archive/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
 
 build:
   noarch: python
-  number: 0
+  number: 1
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin='x') }}
 
 requirements:
   host:
@@ -30,7 +32,7 @@ test:
     - parse_typhi_mykrobe.py -h
 
 about:
-  home: https://github.com/katholt/genotyphi
+  home: https://github.com/typhoidgenomics/genotyphi
   license: GPL3
   license_file: LICENSE
   summary: Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)
diff --git a/recipes/gentle/build.sh b/recipes/gentle/build.sh
new file mode 100755
index 0000000000000..000f0b96fae8a
--- /dev/null
+++ b/recipes/gentle/build.sh
@@ -0,0 +1,11 @@
+#!/bin/sh
+set -ex
+aclocal
+libtoolize --automake --force --copy
+automake --add-missing
+autoconf
+mkdir -p ${PREFIX}
+
+./configure --prefix=$PREFIX CXXFLAGS="-I${PREFIX}/include"
+make
+make install
diff --git a/recipes/gentle/meta.yaml b/recipes/gentle/meta.yaml
new file mode 100644
index 0000000000000..bede2051b03a7
--- /dev/null
+++ b/recipes/gentle/meta.yaml
@@ -0,0 +1,56 @@
+{% set version = "1.9.5.alpha1" %}
+package:
+  name: gentle
+  version: {{ version }}
+
+source:
+  url: https://github.com/GENtle-persons/gentle-m/archive/refs/tags/{{ version }}.tar.gz
+  sha256: dabf9145158423f56cfbd839d47a5bfbebb3e66f10605b036454035c40dd729e
+  sha1: ef42ec806cfc92bab3ff4245b1d63a45e2bef802
+  md5: e14ebb0d99e370584fc8a9fa3e178278
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('gentle', max_pin="x") }}
+
+requirements:
+  build:
+    - {{ compiler('cxx') }}
+    - {{ compiler('c') }}
+    - autoconf
+    - automake
+    - make
+    - m4
+  host:
+    - wxwidgets
+    - tinyxml
+    - sqlite
+    - mysql
+  run:
+    - wxwidgets
+    - tinyxml
+    - sqlite
+    - mysql
+
+test:
+  commands:
+    - test -e $PREFIX/bin/GENtle
+
+about:
+  home: https://github.com/GENtle-persons/gentle-m
+  license: GPL-2.0-or-later
+  license_file: COPYING
+  dev_url: https://github.com/GENtle-persons/gentle-m
+  summary: Software suite for DNA cloning
+  description: |
+    GENtle provides a GUI for amino acid editing, plasmid maps,
+    restriction and ligation, alignments, sequencer data import,
+    calculators, gel image display, PCR, and much more.
+
+extra:
+  recipe-maintainers:
+    - smoe
+  identifiers:
+    - debian:gentle
+    - biotools:gentle
diff --git a/recipes/geofetch/meta.yaml b/recipes/geofetch/meta.yaml
index 3ff5be0c40f15..bddae8d83699a 100644
--- a/recipes/geofetch/meta.yaml
+++ b/recipes/geofetch/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "geofetch" %}
-{% set version = "0.12.3" %}
+{% set version = "0.12.6" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 498cd69b54841a2537948bdc375861af1adfd8c3b89b74fdb14537c518dc6c04
+  sha256: 7ce07c05bad3f18b6f44b79579342604c2b56890e1dec293373b462bf06690b6
 
 build:
   number: 0
@@ -15,6 +15,8 @@ build:
     - geofetch = geofetch.geofetch:main
     - sraconvert = geofetch.sraconvert:main
   noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv"
 
 requirements:
@@ -22,6 +24,7 @@ requirements:
     - pip
     - python >=3.8
   run:
+    - python >=3.8
     - attmap >=0.1.8
     - colorama >=0.3.9
     - coloredlogs >=15.0.1
@@ -41,9 +44,6 @@ test:
   commands:
     - geofetch --help
     - sraconvert --help
-  requires:
-    - mock >=2.0.0
-    - pytest ==3.10.1
 
 about:
   home: "https://github.com/pepkit/geofetch/"
diff --git a/recipes/get_homologues/meta.yaml b/recipes/get_homologues/meta.yaml
index 4b34c7901de2f..6146754cffe4e 100644
--- a/recipes/get_homologues/meta.yaml
+++ b/recipes/get_homologues/meta.yaml
@@ -1,6 +1,5 @@
-
-{% set version = "3.6.1" %}
-{% set sha256 = "22b126b45d79cd2f7489cf40c8a22738ecb9a034d2662e9ff82cb93a07d10af7" %}
+{% set version = "3.6.2" %}
+{% set sha256 = "882f5e94ad1ddcfec6b5ddf4502c946dbcf95a53adb3445a6aaf917ba6052cee" %}
 
 package:
   name: get_homologues
@@ -9,42 +8,39 @@ package:
 build:
   number: 0
   noarch: generic
-  #skip: True  # [osx]
   script_env:
    - LC_ALL=POSIX
+  run_exports:
+    - {{ pin_subpackage('get_homologues', max_pin="x") }}
 
 source:
   url: https://github.com/eead-csic-compbio/get_homologues/archive/refs/tags/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
 
 requirements:
-
   run:
     - wget
-
     - perl
     - perl-gd
-
     - r-base
     - r-gplots
     - r-dendextend
     - r-ape
     - r-factoextra
-
     - blast
     - hmmer
     - diamond
-    - mcl 
+    - mcl
     - cogtriangles
     - phylip
 
-test: 
+test:
   source_files:
     - CHANGES.txt
     - "*.pl"
     - lib
     - bin
-    - db 
+    - db
 
   commands:
     - get_homologues.pl -v
@@ -53,14 +49,14 @@ test:
 about:
   home: https://github.com/eead-csic-compbio/get_homologues
   summary: "A versatile software package for pan-genome analysis, including GET_HOMOLOGUES and GET_HOMOLOGUES-EST"
-  license: GPL3
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE.txt
-   
 
 extra:
   identifiers:
     - biotools:get_homologues
     - doi:https://doi.org/10.1128/AEM.02411-13
-    - doi:https://doi.org/10.3389/fpls.2017.00184 
+    - doi:https://doi.org/10.3389/fpls.2017.00184
     - doi:https://doi.org/10.1007/978-1-4939-1720-4_14
     - doi:https://doi.org/10.1007/978-1-0716-2429-6_9
diff --git a/recipes/get_orfs/build.sh b/recipes/get_orfs/build.sh
new file mode 100644
index 0000000000000..acb1c63caeec0
--- /dev/null
+++ b/recipes/get_orfs/build.sh
@@ -0,0 +1,7 @@
+#!/bin/bash
+mkdir release && pushd release
+cmake -DCMAKE_BUILD_TYPE=Release ..
+make VERBOSE=1 -j ${CPU_COUNT}
+install -d $PREFIX/bin
+install get_orfs $PREFIX/bin
+popd
diff --git a/recipes/get_orfs/meta.yaml b/recipes/get_orfs/meta.yaml
new file mode 100644
index 0000000000000..c4543774d55d6
--- /dev/null
+++ b/recipes/get_orfs/meta.yaml
@@ -0,0 +1,44 @@
+{% set name = "get_orfs" %}
+{% set version = "1.1.0" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/linsalrob/{{ name }}/archive/v{{ version }}.tar.gz
+  sha256: 6a9df2e0949b2e75b2ebb5bbeafa97d4fdf1f0691258ffda70797129811cf4d1
+
+build:
+  skip: True  # [osx]
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('get_orfs', max_pin="x") }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('cxx') }}
+    - cmake
+  host:
+    - zlib
+    - pthread-stubs
+  run:
+    - zlib
+    - pthread-stubs
+
+test:
+  commands:
+    - get_orfs --help 2>&1 | grep translation
+
+about:
+  home: https://github.com/linsalrob/get_orfs
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "Fast extraction of ORFs in all possible translation tables"
+  dev_url: https://github.com/linsalrob/get_orfs
+
+extra:
+  recipe-maintainers:
+    - linsalrob
diff --git a/recipes/getorganelle/meta.yaml b/recipes/getorganelle/meta.yaml
index 01453f6f21055..bc62d76f7e438 100644
--- a/recipes/getorganelle/meta.yaml
+++ b/recipes/getorganelle/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "getorganelle" %}
-{% set version = "1.7.7.0" %}
+{% set version = "1.7.7.1" %}
 
 package:
   name: {{name}}
@@ -7,20 +7,21 @@ package:
 
 source:
   url: https://github.com/Kinggerm/GetOrganelle/archive/{{version}}.tar.gz
-  sha256: dd351b5cd33688adfcd8bff9794ae0cc0ce01a572dac2bcf6c9d7db77b3e4883
+  sha256: cf8e14766de43967182be839de20c9d1709b60fae38a0b3d175742dfad7a5d44
 
 build:
   number: 0
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('getorganelle', max_pin="x") }}
 
 requirements:
   host:
-    - python
+    - python >=3.7
     - pip
-
   run:
-    - python
+    - python >=3.7
     - perl
     - pigz
     - spades >=3.9
@@ -33,16 +34,25 @@ requirements:
     - requests
 
 test:
-  imports:
-    - GetOrganelleLib
-
+  #imports:
+    #- GetOrganelleLib
   commands:
     - get_organelle_from_reads.py -h
     - get_organelle_from_assembly.py -h
     - slim_graph.py -h
 
 about:
-  home: http://github.com/Kinggerm/GetOrganelle
-  license: GPL3
+  home: https://github.com/Kinggerm/GetOrganelle
+  license: "GPL-3.0-or-later"
+  license_family: GPL3
   license_file: LICENSE
   summary: Get organelle genomes from genome skimming data
+  dev_url: https://github.com/Kinggerm/GetOrganelle
+  doc_url: https://github.com/Kinggerm/GetOrganelle/wiki
+
+extra:
+  identifiers:
+    - doi:10.1186/s13059-020-02154-5
+    - biotools:getorganelle
+    - usegalaxy-eu:get_organelle_from_reads
+    - usegalaxy-eu:get_annotated_regions_from_gb
diff --git a/recipes/gfaffix/meta.yaml b/recipes/gfaffix/meta.yaml
index 6a61483f430bd..9bab54cd82305 100644
--- a/recipes/gfaffix/meta.yaml
+++ b/recipes/gfaffix/meta.yaml
@@ -1,5 +1,7 @@
 {% set name = "GFAffix" %}
-{% set version = "0.1.4" %}
+{% set version = "0.1.5b" %}
+{% set sha256 = "7a49a588c374670316f52f30d209766c93c99391e03d68262a0e40e75898e43c " %}
+
 
 package:
   name: {{ name|lower }}
@@ -7,10 +9,12 @@ package:
 
 source:
   url: https://github.com/marschall-lab/{{ name }}/archive/refs/tags/{{ version }}.tar.gz
-  sha256: 648dba1258b10dd8121d5b0eecf4226f7d689bfa1bb7b33d0d15924f090d5276 
+  sha256: {{ sha256 }}
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x.x", allow_no_other_outputs=True) }}
 
 requirements:
   build:
diff --git a/recipes/gfflu/meta.yaml b/recipes/gfflu/meta.yaml
index e4e3995a5ed31..fed4d666cd07c 100644
--- a/recipes/gfflu/meta.yaml
+++ b/recipes/gfflu/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "gfflu" %}
-{% set version = "0.0.1" %}
+{% set version = "0.0.2" %}
 
 package:
   name: {{ name|lower }}
@@ -7,7 +7,7 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 49a4df62c2538b59f404df6b6f12afa7d261dea6269ba9998ecfed24874c79da
+  sha256: c327a59786500ae714a5d16cb87a7019c120e4d2a1764ac06a79e6a87de5d9fc
 
 build:
   number: 0
diff --git a/recipes/gffpandas/meta.yaml b/recipes/gffpandas/meta.yaml
new file mode 100644
index 0000000000000..0d3f2ead2c06e
--- /dev/null
+++ b/recipes/gffpandas/meta.yaml
@@ -0,0 +1,37 @@
+{% set name = "gffpandas" %}
+{% set version = "1.2.2" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/foerstner-lab/gffpandas/archive/v{{ version }}.tar.gz
+  sha256: bf58757e8d0eb4c2aa800864d2ab6e8ee3d499862473417435b57a05d9bf00b2
+
+build:
+  number: 0
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  run_exports:
+    - {{ pin_subpackage('gffpandas', max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3
+    - pip
+  run:
+    - python >=3
+    - pandas
+
+test:
+  imports:
+    - gffpandas
+
+about:
+  home: https://github.com/foerstner-lab/gffpandas
+  summary: "Parse GFF3 into Pandas dataframes"
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  doc_url: https://gffpandas.readthedocs.io/en/latest/
diff --git a/recipes/gffread/meta.yaml b/recipes/gffread/meta.yaml
index cf0bd29fad6db..5ae18c806919d 100644
--- a/recipes/gffread/meta.yaml
+++ b/recipes/gffread/meta.yaml
@@ -12,7 +12,9 @@ source:
       - Makefile.patch
 
 build:
-  number: 3
+  number: 4
+  run_exports:
+    - {{ pin_subpackage("gffread", max_pin="x.x") }}
 
 requirements:
   build:
@@ -34,6 +36,8 @@ about:
   dev_url: "https://github.com/gpertea/gffread"
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:gffread
   skip-lints:
diff --git a/recipes/gfftk/meta.yaml b/recipes/gfftk/meta.yaml
new file mode 100644
index 0000000000000..60caeb4b3da4a
--- /dev/null
+++ b/recipes/gfftk/meta.yaml
@@ -0,0 +1,46 @@
+{% set name = "gfftk" %}
+{% set version = "24.2.4" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/gfftk-{{ version }}.tar.gz
+  sha256: 053a95204cfcb24b47e0dc23e5983b57cdc0023a37763a4c80a83d7d92598056
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - gfftk = gfftk.__main__:main
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  run_exports:
+    - {{ pin_subpackage('gfftk', max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.6
+    - pip
+  run:
+    - python >=3.6
+    - natsort
+    - numpy
+    - table2asn
+
+test:
+  imports:
+    - gfftk
+  commands:
+    - gfftk --help
+
+about:
+  home: https://github.com/nextgenusfs/gfftk
+  summary: 'GFFtk: genome annotation GFF3 tool kit'
+  license: BSD-2-Clause
+  license_family: BSD
+  license_file: LICENSE.md
+
+extra:
+  recipe-maintainers:
+    - nextgenusfs
diff --git a/recipes/gffutils/meta.yaml b/recipes/gffutils/meta.yaml
index f1f35d06d9903..f57c8e24baa63 100644
--- a/recipes/gffutils/meta.yaml
+++ b/recipes/gffutils/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "gffutils" %}
-{% set version = "0.12" %}
-{% set sha256 = "b31e261db5bd8737cb712c361c129eb2c373ef62f03b62770320589f10da1983" %}
+{% set version = "0.13" %}
+{% set sha256 = "b0d52f35c014cc0330fb5c4e3c6fea127c90ccf4c5384a825cdb5c8ff330d4eb" %}
 
 package:
   name: "{{ name|lower }}"
@@ -14,6 +14,8 @@ build:
   noarch: python
   number: 0
   script: "{{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   host:
@@ -25,7 +27,6 @@ requirements:
     - pyfaidx >=0.5.5.2
     - python
     - simplejson
-    - six >=1.12.0
 
 test:
   imports:
diff --git a/recipes/gget/meta.yaml b/recipes/gget/meta.yaml
index d634c284a5a31..f47038aae5141 100644
--- a/recipes/gget/meta.yaml
+++ b/recipes/gget/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "gget" %}
-{% set version = "0.27.8" %}
-{% set sha256 = "40d31eb6f003ece6957747b510c038dda7665a490207b300c9762d94c96fff10" %}
+{% set version = "0.28.4" %}
+{% set sha256 = "bab45530f72b189b233a72be20421176fbc4ca7ed407e36eec758086c2cda7c6" %}
 
 package:
   name: "{{ name|lower }}"
@@ -13,29 +13,24 @@ source:
 build:
   number: 0
   noarch: python
-  script: {{ PYTHON }} -m pip install --no-deps --ignore-installed -vv .
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation -vvv .
+  run_exports:
+    - {{ pin_subpackage('gget', max_pin="x.x") }}
 
 requirements:
-  build:
-    - python >=3.6
-    - pip
-    - setuptools
   host:
     - python >=3.6
-    - numpy >=1.17.2
-    - pandas >=1.0.0
+    - pip
+    - bs4
     - requests >=2.22.0
+    - pandas >=1.0.0
     - ipython
-    - matplotlib-base
     - mysql-connector-python >=8.0.5,<=8.0.29
-    - beautifulsoup4 >=4.10.0
-    - ipywidgets
+    - matplotlib-base
     - tqdm
-    - py3Dmol >=1.8.0
-    - curl
+    - ipywidgets
     - lxml
-    - openmm ==7.5.1
-    - openai
+    - numpy >=1.17.2
   run:
     - python >=3.6
     - numpy >=1.17.2
@@ -52,7 +47,7 @@ requirements:
     - lxml
     - openmm ==7.5.1
     - openai
-    
+
 test:
   commands:
     - {{ name }} ref --help
diff --git a/recipes/giatools/meta.yaml b/recipes/giatools/meta.yaml
new file mode 100644
index 0000000000000..f63d780aa5808
--- /dev/null
+++ b/recipes/giatools/meta.yaml
@@ -0,0 +1,43 @@
+{% set name = "giatools" %}
+{% set version = "0.1.1" %}
+
+package:
+  name: "{{ name }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://github.com/BMCV/giatools/archive/refs/tags/{{ version }}.zip"
+  sha256: 7b4aeb897382d493dd55f5440a3d2a81e70a096ddf88155faebfb38f0ec774f7
+
+build:
+  number: 0
+  noarch: python
+  script: "{{ PYTHON }} -m pip install --no-deps --ignore-installed . -vv "
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.8,<3.12
+    - pip
+    - setuptools
+    - numpy >=1.18
+    - scikit-image >=0.18
+  run:
+    - python >=3.8,<3.12
+    - numpy >=1.18
+    - scikit-image >=0.18
+
+test:
+  commands:
+    - python -c "import giatools; print(giatools.VERSION)"
+
+about:
+  home: "https://github.com/BMCV/giatools"
+  license: MIT
+  summary: "Tools required for Galaxy Image Analysis"
+  dev_url: "https://github.com/BMCV/giatools"
+
+extra:
+  recipe-maintainers:
+    - kostrykin
diff --git a/recipes/gimbleprep/meta.yaml b/recipes/gimbleprep/meta.yaml
new file mode 100644
index 0000000000000..838501aeb7602
--- /dev/null
+++ b/recipes/gimbleprep/meta.yaml
@@ -0,0 +1,54 @@
+{% set name = "gimbleprep" %}
+{% set version = "0.0.2" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/LohseLab/gimbleprep/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: afa5311acd8030635073dbe01b0e2cea55beecf217b968e43eb548bde418ba06
+
+build:
+  noarch: python
+  number: 0
+  entry_points:
+    - gimbleprep = gimbleprep.interface:main
+  script: {{ PYTHON }} setup.py install --single-version-externally-managed --record=record.txt
+  run_exports:
+    - {{ pin_subpackage("gimbleprep", max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.8
+    - pip
+  run:
+    - python >=3.8
+    - docopt
+    - numpy
+    - pandas
+    - parallel
+    - pysam
+    - tqdm
+    - bedtools
+    - bcftools
+    - samtools
+    - vcflib
+    - mosdepth ==0.3.2
+
+test:
+  commands:
+    - gimbleprep --help
+
+about:
+  home: https://github.com/LohseLab/gimbleprep
+  summary: Preprocess fasta, bam and vcf files ready to be used by gimble
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE
+  doc_url: https://github.com/LohseLab/gimbleprep
+
+extra:
+  recipe-maintainers:
+    - GertjanBisschop
+    - DRL
diff --git a/recipes/gimmemotifs/meta.yaml b/recipes/gimmemotifs/meta.yaml
index d4aa790fba52f..7811f1aef805b 100644
--- a/recipes/gimmemotifs/meta.yaml
+++ b/recipes/gimmemotifs/meta.yaml
@@ -9,7 +9,11 @@ source:
   sha256: 8e7d23a898174a962c845b22433a74e3ddde619c5d77f3a5b5dbfb8fa61e7351
 
 build:
-  number: 4
+  number: 5
+  skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage('gimmemotifs', max_pin="x.x") }}
+    - {{ pin_subpackage('gimmemotifs-minimal', max_pin="x.x") }}
 
 outputs:
   - name: gimmemotifs-minimal
diff --git a/recipes/glimmerhmm/meta.yaml b/recipes/glimmerhmm/meta.yaml
index 627e2e08693c2..a23cc5efbff1d 100644
--- a/recipes/glimmerhmm/meta.yaml
+++ b/recipes/glimmerhmm/meta.yaml
@@ -7,7 +7,9 @@ source:
   url: https://ccb.jhu.edu/software/glimmerhmm/dl/GlimmerHMM-3.0.4.tar.gz
 
 build:
-  number: 6
+  number: 7
+  run_exports:
+    - {{ pin_subpackage('glimmerhmm', max_pin="x") }}
 
 requirements:
   build:
@@ -28,3 +30,7 @@ about:
   home: https://ccb.jhu.edu/software/glimmerhmm/
   license: Artistic License
   summary: "GlimmerHMM is a gene finder based on a Generalized Hidden Markov Model (GHMM)"
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/gmap/build.sh b/recipes/gmap/build.sh
index e9921dfe99cee..759a24c161362 100644
--- a/recipes/gmap/build.sh
+++ b/recipes/gmap/build.sh
@@ -1,30 +1,64 @@
-#!/bin/bash
+#!/bin/bash -euo
 
-export INCLUDE_PATH=${PREFIX}/include
-export LIBRARY_PATH=${PREFIX}/lib
+export INCLUDE_PATH="${PREFIX}/include"
+export LIBRARY_PATH="${PREFIX}/lib"
 export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
 export CFLAGS="${CFLAGS} -O3"
 export CPPFLAGS="${CPPFLAGS} -I${PREFIX}/include"
 
+export LC_ALL=en_US.UTF-8
+
 if [ "$(uname)" == "Darwin" ]; then
     # for Mac OSX
     export LDFLAGS="${LDFLAGS} -headerpad_max_install_names"
     export CFLAGS="${CFLAGS} -m64"
+    export LC_ALL=C
 fi
 
-export LANGUAGE=en_US.UTF-8
-export LANG=en_US.UTF-8
-export LC_ALL=en_US.UTF-8
+case $(uname -m) in
+	x86_64)
+		SIMD_LEVEL="sse42"
+		;;
+	aarch64)
+		SIMD_LEVEL="arm"
+		;;
+	*)
+		SIMD_LEVEL="none"
+		;;
+esac
 
-autoconf
-autoheader
+autoreconf -if
 ./configure CC="${CC}" CFLAGS="${CFLAGS}" \
 	CPPFLAGS="${CPPFLAGS}" \
 	LDFLAGS="${LDFLAGS}" \
 	--prefix="${PREFIX}" \
 	--with-gmapdb="${PREFIX}/share" \
-	--with-simd-level=sse42
+	--with-simd-level=${SIMD_LEVEL}
 
 make -j"${CPU_COUNT}"
 make install
 make clean
+
+# Fix perl shebang
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' ${PREFIX}/bin/dbsnp_iit
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' ${PREFIX}/bin/ensembl_genes
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' ${PREFIX}/bin/fa_coords
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' ${PREFIX}/bin/gff3_genes
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' ${PREFIX}/bin/gff3_introns
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' ${PREFIX}/bin/gff3_splicesites
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' ${PREFIX}/bin/gmap_build
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' ${PREFIX}/bin/gmap_cat
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' ${PREFIX}/bin/gmap_process
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' ${PREFIX}/bin/gtf_genes
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' ${PREFIX}/bin/gtf_introns
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' ${PREFIX}/bin/gtf_splicesites
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' ${PREFIX}/bin/gtf_transcript_splicesites
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' ${PREFIX}/bin/gvf_iit
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' ${PREFIX}/bin/md_coords
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' ${PREFIX}/bin/psl_genes
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' ${PREFIX}/bin/psl_introns
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' ${PREFIX}/bin/psl_splicesites
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' ${PREFIX}/bin/snpindex
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' ${PREFIX}/bin/vcf_iit
+
+rm -rf ${PREFIX}/bin/*.bak
diff --git a/recipes/gmap/meta.yaml b/recipes/gmap/meta.yaml
index 4487cb1b37c67..e8c298171af19 100644
--- a/recipes/gmap/meta.yaml
+++ b/recipes/gmap/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "GMAP" %}
-{% set version = "2023.07.20" %}
-{% set sha256 = "19e70eebd9b282d8596721812d071efed188b6d5000627b9948f0486f87fe68f" %}
+{% set version = "2024.05.20" %}
+{% set sha256 = "a3e434ace5943595be983ad213a4d05d5c86287f13ca50d938e8bcb1b17f4087" %}
 
 package:
   name: {{ name|lower }}
@@ -14,14 +14,18 @@ source:
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage('gmap', max_pin=None) }}
 
 requirements:
   build:
     - make
     - {{ compiler('c') }}
     - autoconf
-    - perl
+    - automake
+    - libtool
   host:
+    - perl
     - zlib
     - bzip2
   run:
@@ -34,13 +38,17 @@ test:
     - "gsnap --help"
 
 about:
-  home: "http://research-pub.gene.com/gmap/"
+  home: "http://research-pub.gene.com/gmap"
   license: "Apache-2.0"
   license_family: APACHE
   license_file: LICENSE
   summary: "Genomic mapping and alignment program for mRNA and EST sequences."
+  dev_url: "http://research-pub.gene.com/gmap"
+  doc_url: "http://research-pub.gene.com/gmap"
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:gmap
     - biotools:gsnap
diff --git a/recipes/gmm-demux/meta.yaml b/recipes/gmm-demux/meta.yaml
new file mode 100644
index 0000000000000..7836d387489f5
--- /dev/null
+++ b/recipes/gmm-demux/meta.yaml
@@ -0,0 +1,50 @@
+{% set name = "GMM-Demux" %}
+{% set version = "0.2.2.3" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/GMM_Demux-{{ version }}.tar.gz
+  sha256: 989092feea7a61e309f6a75ce77246f619c2eff997f1f7a1a7457dfaf5a10ecf
+
+build:
+  entry_points:
+    - GMM-demux = GMM_Demux.GMM_Demux:main
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('gmm-demux', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python
+    - pip
+  run:
+    - python
+    - pandas >=1.4.3
+    - numpy >=1.22.4
+    - scipy >=1.12.0
+    - tabulate
+    - bitvector
+    - scikit-learn
+
+test:
+  imports:
+    - GMM_Demux
+  commands:
+    - GMM-demux --help
+
+about:
+  home: https://github.com/CHPGenetics/GMM-demux
+  summary: GMM-Demux is a Gaussian-Mixture-Model-based software for processing sample barcoding data (cell hashing and MULTI-seq).
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  dev_url: https://github.com/CHPGenetics/GMM-demux
+
+extra:
+  identifiers:
+    - doi:10.1186/s13059-020-02084-2
diff --git a/recipes/gmsc-mapper/meta.yaml b/recipes/gmsc-mapper/meta.yaml
new file mode 100644
index 0000000000000..52d5894f99a1a
--- /dev/null
+++ b/recipes/gmsc-mapper/meta.yaml
@@ -0,0 +1,58 @@
+{% set name = "GMSC-mapper" %}
+{% set version = "0.1.0" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://github.com/BigDataBiology/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz"
+  sha256: 30cc09425028969ce9847a7c55d93919921fef7d91a138bfff2b9a1e31bc2921
+
+build:
+  noarch: python
+  number: 0
+  run_exports:
+    - {{ pin_compatible(name, max_pin="x.x") }}
+  entry_points:
+    - gmsc-mapper=gmsc_mapper.main:main
+  script: {{ PYTHON }} -m pip install --no-deps . -vv
+
+requirements:
+  host:
+    - pip
+    - python >=3.7
+  run:
+    - atomicwrites
+    - biopython
+    - Bottleneck
+    - certifi
+    - numexpr
+    - numpy
+    - packaging
+    - pandas
+    - pyparsing
+    - pyrodigal
+    - python-dateutil
+    - pytz
+    - six
+    - python >=3.7
+    - mmseqs2 
+    - diamond >=2.0.13
+
+test:
+  imports:
+    - gmsc_mapper
+  commands:
+    - gmsc-mapper --help
+
+about:
+  home: "https://github.com/BigDataBiology/GMSC-mapper"
+  license: MIT
+  license_family: MIT
+  summary: "GMSC-mapper is a command line tool to query the Global Microbial smORFs Catalog (GMSC)."
+
+extra:
+  recipe-maintainers:
+    - luispedro
+    - cocodyq
diff --git a/recipes/gmwi2/meta.yaml b/recipes/gmwi2/meta.yaml
index da022ab9ff5a3..1a93956e3f40b 100644
--- a/recipes/gmwi2/meta.yaml
+++ b/recipes/gmwi2/meta.yaml
@@ -9,6 +9,8 @@ build:
   noarch: python
   number: 0
   script: {{ PYTHON }} -m pip install . -vv --no-dependencies
+  run_exports:
+    - {{ pin_subpackage("gmwi2", max_pin="x") }}
 
 source:
   url: https://github.com/danielchang2002/GMWI2/archive/{{version}}.tar.gz
diff --git a/recipes/gndiff/build.sh b/recipes/gndiff/build.sh
index 8520f299e8c1b..fcfc499c48070 100644
--- a/recipes/gndiff/build.sh
+++ b/recipes/gndiff/build.sh
@@ -1,6 +1,5 @@
 #!/bin/bash
 
-cd gndiff
 go build
 mkdir -p $PREFIX/bin
 mv gndiff $PREFIX/bin
diff --git a/recipes/gndiff/meta.yaml b/recipes/gndiff/meta.yaml
index 8d6f5adf8105b..a87b5907e1781 100644
--- a/recipes/gndiff/meta.yaml
+++ b/recipes/gndiff/meta.yaml
@@ -1,17 +1,18 @@
-{% set version = "0.2.0" %}
-{% set sha256 = "1dc41ccf7929ad6a572eda197eb18cdd247c8a7cc2c2235ea6fb48cd846002f5" %}
+{% set version = "0.3.0" %}
+{% set sha256 = "a91176a7799f674ecbddfb8e7204b9ed81d1e599f11d5b45a8d6c269da04d1a8" %}
 
 package:
   name: "gndiff"
   version: {{ version }}
 
 source:
-  url:
-    - https://github.com/gnames/gndiff/archive/refs/tags/v{{ version}}.tar.gz
+  url: https://github.com/gnames/gndiff/archive/refs/tags/v{{ version}}.tar.gz
   sha256: {{ sha256 }}
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage('gndiff', max_pin="x") }}
 
 requirements:
   build:
diff --git a/recipes/gnparser/meta.yaml b/recipes/gnparser/meta.yaml
index 91f8b8890b40f..c01464d8282b5 100644
--- a/recipes/gnparser/meta.yaml
+++ b/recipes/gnparser/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "1.7.3" %}
-{% set sha256 = "40813d180b8ab078b52fcd0ba4be6e0aae5f462afabbb6b5d360638d833cd4eb" %}
+{% set version = "1.9.2" %}
+{% set sha256 = "e061f99b65cf0fe33cf04acbea76943f3f91aa0ddcab77a199ac981d3540e183" %}
 
 package:
   name: "gnparser"
@@ -12,6 +12,8 @@ source:
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage('gnparser', max_pin="x") }}
 
 requirements:
   build:
@@ -26,6 +28,7 @@ about:
   home: https://parser.globalnames.org/
   dev_url: https://github.com/gnames/gnparser
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary: "GNparser normalises scientific names and extracts their semantic elements"
 
diff --git a/recipes/go-figure/build.sh b/recipes/go-figure/build.sh
new file mode 100644
index 0000000000000..fcbe3d9ae2f36
--- /dev/null
+++ b/recipes/go-figure/build.sh
@@ -0,0 +1,12 @@
+#!/bin/bash
+
+# Create bin directory if necessary
+mkdir -p $PREFIX/bin
+
+# Copy executable and required data files to bin directory
+cp gofigure.py $PREFIX/bin/
+cp data/ic.tsv $PREFIX/bin/
+cp data/go.obo $PREFIX/bin/
+cp data/relations_full.tsv $PREFIX/bin/
+
+chmod +x $PREFIX/bin/gofigure.py
diff --git a/recipes/go-figure/change_data_path.patch b/recipes/go-figure/change_data_path.patch
new file mode 100644
index 0000000000000..cf3277542f412
--- /dev/null
+++ b/recipes/go-figure/change_data_path.patch
@@ -0,0 +1,36 @@
+diff --git a/gofigure.py b/gofigure.py
+index 0517691..651e494 100755
+--- a/gofigure.py
++++ b/gofigure.py
+@@ -1,3 +1,4 @@
++#!/usr/bin/env python3
+ ##
+ ## Summary Visualizations of Gene Ontology Enrichment with GO-Figure!
+ ##
+@@ -379,7 +380,7 @@ def process_input(input_file_path,input_type):
+ def read_IC(scriptPath):
+ 	ic_dict = defaultdict(float)
+ 	frequency_dict = defaultdict(float)
+-	for line in open(scriptPath+'/data/ic.tsv'):
++	for line in open(scriptPath+'/ic.tsv'):
+ 		if not line.startswith('#'):
+ 			go,ic,frequency = line.strip().split('\t')
+ 			ic_dict[go] = float(ic)
+@@ -394,7 +395,7 @@ def read_OBO(scriptPath):
+ 	namespace_dict = defaultdict(str)
+ 	obsolete_dict = defaultdict(set)
+ 	alt_dict = defaultdict(str)
+-	for line in open(scriptPath+'/data/go.obo'):
++	for line in open(scriptPath+'/go.obo'):
+ 		if line.startswith('id: GO:'):
+ 			go = line.strip().split('id: ')[1]
+ 			obsolete_bool = False
+@@ -423,7 +424,7 @@ def read_OBO(scriptPath):
+ def read_parents_children(scriptPath):
+ 	parents_dict = defaultdict(list)
+ 	children_dict = defaultdict(list)
+-	for line in open(scriptPath+'/data/relations_full.tsv'):
++	for line in open(scriptPath+'/relations_full.tsv'):
+ 		if not line.startswith('#'):
+ 			go,parent = line.strip().split('\t')
+ 			parents_dict[go].append(parent)
diff --git a/recipes/go-figure/meta.yaml b/recipes/go-figure/meta.yaml
new file mode 100644
index 0000000000000..082dc24b1b0d1
--- /dev/null
+++ b/recipes/go-figure/meta.yaml
@@ -0,0 +1,43 @@
+{% set name = 'go-figure' %}
+{% set version = '1.0.2' %}
+
+package:
+  name: '{{ name }}'
+  version: '{{ version }}'
+
+source:
+  url: https://gitlab.com/evogenlab/GO-Figure/-/archive/v{{ version }}/GO-Figure-v{{ version }}.tar.gz
+  sha256: 91728363c2fa1b1210355f665fdcfdd36287daa5fbaf05c2ac502c95fbb95b26
+  patches:
+    - change_data_path.patch
+
+build:
+  noarch: python
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('go-figure', max_pin="x") }}
+
+requirements:
+  run:
+    - python >=3
+    - matplotlib-base 3.7.1.*
+    - scikit-learn 1.2.2.*
+    - seaborn 0.12.2.*
+    - adjusttext 0.7.3.1.*
+
+test:
+  commands:
+    - /usr/bin/env python --version
+    - python3 $(which gofigure.py) --help
+
+about:
+  home: https://gitlab.com/evogenlab/GO-Figure
+  license: GPL-3.0-or-later
+  summary: "GO-Figure! offers a simple solution for command-line plotting of informative summary visualisations of lists of GO terms, designed to support exploratory data analyses and multiple dataset comparisons."
+  license_family: GPL3
+  description: 'GO-Figure! offers a simple solution for command-line plotting of informative summary visualisations of lists of GO terms, designed to support exploratory data analyses and multiple dataset comparisons.'
+  dev_url: 'https://gitlab.com/evogenlab/GO-Figure'
+
+extra:
+  recipe-maintainers:
+    - hdetering
diff --git a/recipes/goalign/conda_build_config.yaml b/recipes/goalign/conda_build_config.yaml
deleted file mode 100644
index 4c386030469ee..0000000000000
--- a/recipes/goalign/conda_build_config.yaml
+++ /dev/null
@@ -1,2 +0,0 @@
-go:
-  - go-nocgo=1.18.3
diff --git a/recipes/goalign/meta.yaml b/recipes/goalign/meta.yaml
index a4fdf70d5bb57..6821e4de56ec7 100644
--- a/recipes/goalign/meta.yaml
+++ b/recipes/goalign/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.3.5" %}
+{% set version = "0.3.7" %}
 {% set name = "goalign" %}
 
 package:
@@ -6,17 +6,19 @@ package:
   version: {{ version }}
 
 build:
-  number: 1
+  number: 0
   binary_relocation: false
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 source:
   - url: https://github.com/evolbioinfo/{{name}}/archive/v{{ version }}.tar.gz
-    sha256: fe4271dd38e2889b3967a49ef59827414bc07cb8c7030c49b62059a5c1e6d518
+    sha256: ae88553b45944f104486aa2c71161820ac9125f3628bb494ee76bfea3e75142e
     folder: src/github.com/evolbioinfo/{{name}}/
 
 requirements:
   build:
-    - {{ go }}
+    - go-nocgo
 
 test:
   commands:
diff --git a/recipes/gofasta/meta.yaml b/recipes/gofasta/meta.yaml
index 9a812276bc1a6..64a8626a53d44 100644
--- a/recipes/gofasta/meta.yaml
+++ b/recipes/gofasta/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.2.0" %}
+{% set version = "1.2.1" %}
 
 package:
   name: gofasta
@@ -6,14 +6,16 @@ package:
 
 source:
   url: https://github.com/virus-evolution/gofasta/archive/v{{ version }}.tar.gz
-  sha256: f5293fcb4796f97810cbe3d99f5b81807f904822a85b042995b1eeef16a24e5c
+  sha256: 9ac248b6cd43954299ab88b536b155c9378394fc22f35840bae2ad3ea1234bff
 
 requirements:
   build:
     - {{ compiler('go-nocgo') }}
 
 build:
-  number: 0
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('gofasta', max_pin="x") }}
   script:
     - mkdir -p $PREFIX/bin
     - go build -o $PREFIX/bin/gofasta
@@ -27,3 +29,7 @@ about:
   license: MIT
   license_file: LICENSE
   summary: Genomic epidemiology utilities for short genome alignments
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/gogstools/meta.yaml b/recipes/gogstools/meta.yaml
new file mode 100644
index 0000000000000..2ccbece7643eb
--- /dev/null
+++ b/recipes/gogstools/meta.yaml
@@ -0,0 +1,46 @@
+{% set name = "gogstools" %}
+{% set version = "0.1.2" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: 8fd83e481de68a9f7280a612043a72e851c102cca6536e12be4bf1dc7a008404
+
+build:
+  number: 0
+  noarch: generic
+  script: "{{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation"
+  run_exports:
+    - {{ pin_subpackage('gogstools', max_pin="x") }}
+
+requirements:
+  host:
+    - pip
+    - python ==3.10
+  run:
+    - python ==3.10
+    - bedops ==2.4.39  # version 2.4.40 broke the output of gff2bed
+    - bedtools
+    - gffread
+    - bcbio-gff
+
+test:
+  commands:
+    - ogs_check -h
+    - ogs_merge -h
+
+about:
+  home: "https://github.com/genouest/ogs-tools"
+  license: "GNU General Public v3 (GPLv3)"
+  license_family: GPL3
+  license_file: LICENSE
+  summary: "GenOuest tools for manipulating Official Gene Sets"
+  doc_url: "https://github.com/genouest/ogs-tools"
+  dev_url: "https://github.com/genouest/ogs-tools"
+
+extra:
+  recipe-maintainers:
+    - abretaud
diff --git a/recipes/goldrush/meta.yaml b/recipes/goldrush/meta.yaml
index a0b2f07cbfcd0..14d75ccce8eec 100644
--- a/recipes/goldrush/meta.yaml
+++ b/recipes/goldrush/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "goldrush" %}
-{% set version = "1.0.3" %}
+{% set version = "1.1.1" %}
 
 package:
   name: {{ name|lower }}
@@ -7,11 +7,12 @@ package:
 
 source:
   url: https://github.com/bcgsc/goldrush/releases/download/{{ version }}/{{ name|lower }}-{{ version }}.tar.xz
-  sha256: 194d38dfd117a142187a224975f0936b2cbde33bcc4bfdce320bb4fc29ef0f2c
+  sha256: f9847c3bed5bb16494789661d4e12137537b1987c6bb19a0932ae0dd90b6e3ed
 
 build:
   skip: true  # [py < 38 or win or py > 39]
-  number: 1
+  number: 0
+  run_exports: {{ pin_subpackage("goldrush", max_pin="x") }}
 
 requirements:
   build:
@@ -28,20 +29,21 @@ requirements:
     - boost-cpp >=1.82.0
     - libdivsufsort
     - sparsehash
-    - btllib
+    - btllib >=1.6.2
   run:
     - make
     - python
     - ntlink >=1.3.0
-    - btllib
-    - tigmint
+    - btllib >=1.6.2
+    - tigmint >=1.2.6
     - minimap2
     - gperftools
+    - bc
 
 test:
   commands:
     - goldrush help
-    - goldrush-edit --help
+    - goldpolish --help
     - goldrush-path --help
   imports:
     - btllib
diff --git a/recipes/goleft/build.sh b/recipes/goleft/build.sh
index 49d4ada78fb2a..5b317e41721de 100644
--- a/recipes/goleft/build.sh
+++ b/recipes/goleft/build.sh
@@ -1,4 +1,4 @@
 #!/bin/bash
-chmod a+x golef*
+chmod a+x goleft*
 mkdir -p $PREFIX/bin
 cp goleft* $PREFIX/bin/goleft
diff --git a/recipes/goleft/meta.yaml b/recipes/goleft/meta.yaml
index 48a4be6f328e7..0b170fe53ab2d 100644
--- a/recipes/goleft/meta.yaml
+++ b/recipes/goleft/meta.yaml
@@ -1,18 +1,22 @@
-{% set version = "0.2.4" %}
+{% set version = "0.2.6" %}
 
 package:
   name: goleft
   version: '{{ version }}'
 
 source:
-  - url: https://github.com/brentp/goleft/releases/download/v{{ version }}/goleft_linux64  # [linux]
-    sha256: 5f8df703f7a369213961b4fc583aa625012548fb213dd906eaaeaaed89a319ab  # [linux]
+  - url: https://github.com/brentp/goleft/releases/download/v{{ version }}/goleft_linux64  # [linux and x86_64]
+    sha256: 3fbb8076c1b2da4a1d7bcb5edd0cc879fe608066c0ca58221db155e7edd5bcb3  # [linux and x86_64]
+  - url: https://github.com/brentp/goleft/releases/download/v{{ version }}/goleft_linux_aarch64  # [linux and aarch64]
+    sha256: bf3179de66297b916e720f72a4afd57fef937b098d869926d5ac967f9634b8b8  # [linux and aarch64]
   - url: https://github.com/brentp/goleft/releases/download/v{{ version }}/goleft_osx  # [osx]
-    sha256: eab89fe80063095f9d01d02bac6770ea9ef102abab900ce01477ebb6fd9bdebc  # [osx]
+    sha256: 1aebf606658b1007669d96a76de9a1a3106b5caa4c4d5b786a75339d35d0e54e  # [osx]
 
 build:
-  number: 1
+  number: 0
   binary_relocation: false
+  run_exports:
+    - {{ pin_subpackage('goleft', max_pin='x.x') }}
 
 requirements:
   run:
@@ -29,6 +33,8 @@ about:
   summary: goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   skip-lints:
     - should_be_noarch_generic
     - should_not_be_noarch_source
diff --git a/recipes/gotree/conda_build_config.yaml b/recipes/gotree/conda_build_config.yaml
deleted file mode 100644
index 4c386030469ee..0000000000000
--- a/recipes/gotree/conda_build_config.yaml
+++ /dev/null
@@ -1,2 +0,0 @@
-go:
-  - go-nocgo=1.18.3
diff --git a/recipes/gotree/meta.yaml b/recipes/gotree/meta.yaml
index 0333e3dbc28f1..f828bc85efeff 100644
--- a/recipes/gotree/meta.yaml
+++ b/recipes/gotree/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.4.3" %}
+{% set version = "0.4.5" %}
 {% set name = "gotree" %}
 
 package:
@@ -6,17 +6,19 @@ package:
   version: {{ version }}
 
 build:
-  number: 2
+  number: 0
   binary_relocation: false
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 source:
   - url: https://github.com/evolbioinfo/{{name}}/archive/v{{ version }}.tar.gz
-    sha256: 5a2a0df16dbd03b018ce5badf1f7dd8072881266a85bec7ea2d986c8f78e41ff
+    sha256: 317a881fc8465e45c991dac9c1fbf95031e8c8cb7fe65a1f4de1c0c1c91e9026
     folder: src/github.com/evolbioinfo/{{name}}/
 
 requirements:
   build:
-    - {{ go }}
+    - go-nocgo
 
 test:
   commands:
diff --git a/recipes/gottcha2/meta.yaml b/recipes/gottcha2/meta.yaml
new file mode 100644
index 0000000000000..50a0db70f10d7
--- /dev/null
+++ b/recipes/gottcha2/meta.yaml
@@ -0,0 +1,51 @@
+{% set name = "GOTTCHA2" %}
+{% set version = "2.1.8.6" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+build:
+  noarch: python
+  number: 0
+  script: {{ PYTHON }} -m pip install -vvv --no-deps --no-build-isolation .
+  entry_points:
+    - gottcha2 = cmd:gottcha2_command
+  run_exports:
+      - {{ pin_subpackage('gottcha2', max_pin='x') }}
+
+source:
+  url: https://github.com/poeli/GOTTCHA2/archive/refs/tags/{{ version }}.tar.gz
+  sha256: 18ae74fa448e837ade605676334c5c37cda07473a6cf0105937d8afe1b017359
+
+requirements:
+  host:
+    - python >=3.6
+    - pip
+  run:
+    - python >=3.6
+    - minimap2 >=2.17
+    - gawk
+    - biom-format >=2.1.7
+    - numpy
+    - pandas
+    - requests
+    - tqdm
+
+test:
+  commands:
+    - minimap2 -h
+    - gawk -h
+    - gottcha2.py --version
+
+about:
+  home: https://github.com/poeli/GOTTCHA2
+  license: BSD-3-Clause
+  license_family: BSD
+  license_file: LICENSE
+  summary: 'Genomic Origin Through Taxonomic CHAllenge (GOTTCHA) v2'
+  dev_url: https://github.com/poeli/GOTTCHA2
+
+extra:
+  identifiers:
+    - biotools:gottcha2
diff --git a/recipes/gottcha2/post-link.sh b/recipes/gottcha2/post-link.sh
new file mode 100644
index 0000000000000..11273771bc6f1
--- /dev/null
+++ b/recipes/gottcha2/post-link.sh
@@ -0,0 +1,5 @@
+echo "
+GOTTCHA2 installed. The database can be download at:
+
+https://ref-db.edgebioinformatics.org/gottcha2/
+" > $PREFIX/.messages.txt
\ No newline at end of file
diff --git a/recipes/grabix/meta.yaml b/recipes/grabix/meta.yaml
index 83e16c66f818a..c08d290d74b4e 100644
--- a/recipes/grabix/meta.yaml
+++ b/recipes/grabix/meta.yaml
@@ -4,11 +4,14 @@ package:
   version: "0.1.8"
 
 build:
-  number: 9
+  number: 10
+  run_exports:
+    - {{ pin_subpackage('grabix', max_pin="x.x") }}
 
 source:
   url: https://github.com/arq5x/grabix/archive/{{ revision }}.tar.gz
   md5: eb8805bed149ef56669ef19abba19b80
+
 requirements:
   build:
     - {{ compiler('cxx') }}
@@ -16,10 +19,16 @@ requirements:
     - zlib
   run:
     - zlib
+
 test:
   commands:
     - grabix
+
 about:
   home: https://github.com/arq5x/grabix
   summary: a wee tool for random access into BGZF files.
   license: MIT
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/graftm/meta.yaml b/recipes/graftm/meta.yaml
index a1d273245217f..79ebc38c5a444 100644
--- a/recipes/graftm/meta.yaml
+++ b/recipes/graftm/meta.yaml
@@ -1,15 +1,17 @@
 package:
   name: graftm
-  version: "0.14.0"
+  version: "0.15.0"
 
 source:
-  url: https://files.pythonhosted.org/packages/63/52/3e79be958516522aa48f137a07a777e763453013ebbc7572a6e180461a1d/graftm-0.14.0.tar.gz
-  sha256: 326270bda534f85f10f748573fa7b51ebbb9b654a1edcbac1c8811f96293419f
+  url: https://files.pythonhosted.org/packages/6f/dc/8c7b874a0fbeaa4ffb613aa0dcee722222ba0c06276e42881cac79048fc7/graftm-0.15.0.tar.gz
+  sha256: 794b2c6a8fff36c81db8b9a544ac021ab1397c569638bf7651ce5329db36de21
 
 build:
-  number: 1
+  number: 0
   noarch: python
   script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
+  run_exports:
+    - {{ pin_subpackage('graftm', max_pin="x") }}
 
 requirements:
   host:
@@ -17,20 +19,20 @@ requirements:
     - pip
     - nose
   run:    
-    - python>3.7
-    - orfm>=0.2.0
-    - hmmer=3.2.1
-    - mfqe>=0.5.0
+    - python >3.7
+    - orfm >=0.2.0
+    - hmmer =3.2.1
+    - mfqe >=0.5.0
     - pplacer
-    - krona>=2.4
-    - mafft>=7.22
-    - diamond>=0.9
+    - krona >=2.4
+    - mafft >=7.22
+    - diamond >=0.9
     - fasttree
-    - biopython>=1.64
-    - biom-format>=2.1.4
+    - biopython >=1.64
+    - biom-format >=2.1.4
     - extern
-    - taxtastic>=0.5.4
-    - dendropy>= 4.1.0
+    - taxtastic >=0.5.4
+    - dendropy >=4.1.0
     - pyyaml
     - fastalite
     - jinja2
@@ -45,3 +47,4 @@ about:
   license: GPL3+
   summary: 'GraftM is a pipeline used for identifying and classifying marker gene reads from metagenomic datasets'
   license_family: GPL3
+  license_file: LICENCE.txt
diff --git a/recipes/graphaligner/meta.yaml b/recipes/graphaligner/meta.yaml
index c4977bd3f8f8b..38b34e29495ea 100644
--- a/recipes/graphaligner/meta.yaml
+++ b/recipes/graphaligner/meta.yaml
@@ -1,19 +1,21 @@
 {% set name = "GraphAligner" %}
-{% set version = "1.0.17b" %}
+{% set version = "1.0.19" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://github.com/maickrau/{{ name }}/files/10706255/{{ name }}.tar.gz
-  sha256: b0eb5531bf111f808feeaf35045d43b7d81f75d87003458c7415622c9e3006ad
+  url: https://github.com/maickrau/{{ name }}/files/14037134/{{ name }}.tar.gz
+  sha256: b65d26d415c3fd459bf2fc884b3d48dc0c55f7e9135e700c5c38d62be8ee39fc
   patches:
     - version.patch
     - linux_link.patch # [linux]
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('graphaligner', max_pin="x.x") }}
 
 requirements:
   build:
diff --git a/recipes/graphanalyzer/meta.yaml b/recipes/graphanalyzer/meta.yaml
index dfc14901acd55..4971952796cdd 100644
--- a/recipes/graphanalyzer/meta.yaml
+++ b/recipes/graphanalyzer/meta.yaml
@@ -1,21 +1,23 @@
-{% set name="graphanalyzer" %}
-{% set version="1.5.1" %}
+{% set name = "graphanalyzer" %}
+{% set version = "1.6.0" %}
 
 package:
   name: {{ name }}
   version: {{ version }}
 
 build:
-  noarch: generic 
+  noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('graphanalyzer', max_pin="x") }}
 
 source:
   url: https://github.com/lazzarigioele/{{ name }}/archive/v{{ version }}.tar.gz
-  sha256: 9e6b327cb8b69be2a5fc6f1407920a6de1a79a3d67bdfd45d4f7f5ec6c5af316
+  sha256: e2b4b6eda06cb98ee17c398be1168cb5f083caa246a5507339bc01b384994258
 
 requirements:
   run:
-    - python >=3.6
+    - python >=3.7
     - pandas >=1.0
     - networkx
     - hvplot
@@ -32,7 +34,9 @@ test:
 
 about:
   home: https://github.com/lazzarigioele/graphanalyzer
-  license: 'GPLv3'
+  license: 'GPL-3.0-or-later'
+  license_family: GPL3
+  license_file: 'LICENSE.txt'
   summary: 'A tool to automatically interpret the outputs generated by vConTACT2 when using the INPHARED database'
 
 extra:
diff --git a/recipes/graphembed/build.sh b/recipes/graphembed/build.sh
new file mode 100644
index 0000000000000..f4634f476014f
--- /dev/null
+++ b/recipes/graphembed/build.sh
@@ -0,0 +1,8 @@
+#!/bin/bash -euo
+
+# Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
+# We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
+export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="$(pwd)/.cargo"
+
+# build statically linked binary with Rust
+RUST_BACKTRACE=1 cargo install --features intel-mkl-static --verbose --path . --root $PREFIX
diff --git a/recipes/graphembed/meta.yaml b/recipes/graphembed/meta.yaml
new file mode 100644
index 0000000000000..08b5d38bbf652
--- /dev/null
+++ b/recipes/graphembed/meta.yaml
@@ -0,0 +1,35 @@
+{% set version = "0.1.1" %}
+
+package:
+  name: graphembed
+  version: {{ version }}
+
+build:
+  number: 1
+  run_exports:
+      - {{ pin_subpackage('graphembed', max_pin="x.x") }}
+  skip: True  # [osx]
+source:
+  url: https://github.com/jianshu93/graphembed/archive/v{{ version }}.tar.gz
+  sha256: 894ffd1e2042ef93501317059c018bef817225dcb994a932ceb7593a134e7d8e
+
+requirements:
+  build:
+    - {{ compiler("cxx") }}
+    - {{ compiler('c') }}
+    - rust >=1.39
+    - make
+    - cmake
+
+test:
+  commands:
+    - graphembed -h
+
+about:
+  home: https://github.com/jean-pierreBoth/graphembed
+  license: MIT
+  summary: Efficient Graph Embedding via Recursive Sketching or High-order Transitivity Preserving with Benchmarking
+extra:
+  maintainers:
+   - Jean Pierre-Both
+   - Jianshu Zhao
diff --git a/recipes/graphmb/meta.yaml b/recipes/graphmb/meta.yaml
index adf167d08590b..3625fab0cb5ed 100644
--- a/recipes/graphmb/meta.yaml
+++ b/recipes/graphmb/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "graphmb" %}
-{% set version = "0.2.3" %}
+{% set version = "0.2.5" %}
 
 package:
   name: {{ name|lower }}
@@ -7,7 +7,7 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/graphmb-{{ version }}.tar.gz
-  sha256: 4cc5719d4c3e5a9ddc48dc7f6e69567c83743851de32d138c86ba4235fd0f8d0
+  sha256: df50c3a27a1d693a00678e54359bebfad8b8637e29441789b1e29c87e94fc880
 
 build:
   entry_points:
@@ -25,9 +25,9 @@ requirements:
     - requests
     - networkx >=2.6.2
     - pytorch >=1.13.1
-    - tensorflow >=2.11.0
+    - tensorflow >=2.11.1
     - tqdm >=4.61.2
-    - mlflow >=2.1.1
+    - mlflow >=2.3.1
     - importlib-resources
 
 test:
diff --git a/recipes/gridss/0001-fix-samtools-version-check.patch b/recipes/gridss/0001-fix-samtools-version-check.patch
new file mode 100644
index 0000000000000..7111cf0e23670
--- /dev/null
+++ b/recipes/gridss/0001-fix-samtools-version-check.patch
@@ -0,0 +1,11 @@
+--- a/gridss_extract_overlapping_fragments
++++ b/gridss_extract_overlapping_fragments
+@@ -206,7 +206,7 @@ for tool in gridsstools samtools ; do
+ 	fi
+ 	write_status "Found $(which $tool)"
+ done
+-samtools_version=$(samtools --version | grep samtools | cut -b 10-)
++samtools_version=$(samtools --version | head -n1 | grep samtools | cut -b 10-)
+ write_status "samtools version: $samtools_version"
+ samtools_major_version=$(echo $samtools_version | cut -f 1 -d ".")
+ samtools_minor_version=$(echo $samtools_version | cut -f 2 -d ".")
diff --git a/recipes/gridss/0002-set-gridssargs-for-virusbreakend-annotation.patch b/recipes/gridss/0002-set-gridssargs-for-virusbreakend-annotation.patch
new file mode 100644
index 0000000000000..0cab94a467907
--- /dev/null
+++ b/recipes/gridss/0002-set-gridssargs-for-virusbreakend-annotation.patch
@@ -0,0 +1,10 @@
+--- a/virusbreakend
++++ b/virusbreakend
+@@ -777,6 +777,7 @@ if [[ ! -f $file_host_annotated_vcf ]] ; then
+ 		-t $threads \
+ 		-r $reference \
+ 		-j $gridss_jar \
++		$gridssargs \
+ 		-s setupreference \
+ 		1>&2 2>> $logfile
+ 	$timecmd java -Xmx4g $jvm_args \
diff --git a/recipes/gridss/meta.yaml b/recipes/gridss/meta.yaml
index 68671af6301ce..478a47b6b0629 100644
--- a/recipes/gridss/meta.yaml
+++ b/recipes/gridss/meta.yaml
@@ -8,9 +8,14 @@ package:
 source:
   url: https://github.com/PapenfussLab/gridss/releases/download/v{{ version }}/gridss-{{ version }}.tar.gz
   sha256: '{{ sha256 }}'
+  patches:
+    - 0001-fix-samtools-version-check.patch
+    - 0002-set-gridssargs-for-virusbreakend-annotation.patch
 
 build:
-  number: 2
+  number: 3
+  run_exports:
+    - {{ pin_subpackage('gridss', max_pin="x.x.x") }}
   skip: True # [osx]
 
 requirements:
diff --git a/recipes/gromacs_py/meta.yaml b/recipes/gromacs_py/meta.yaml
index 45de8a88550fa..4866195e69da8 100644
--- a/recipes/gromacs_py/meta.yaml
+++ b/recipes/gromacs_py/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "gromacs_py" %}
-{% set version = "2.0.2" %}
+{% set version = "2.0.3" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 8cfa15759de5fec06679da00817f00681d7528fa8e287e965864da2c30082f1a
+  sha256: a61a29808ffb91755e7f4db0d8cd0dbb9c697eb8fa4a47562c5386144a3091be
 
 build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   host:
@@ -27,9 +29,9 @@ requirements:
     - os_command_py
     - pdb_manip_py
     - pdb2pqr_htmd_propka30
-    - gromacs=2019.1
-    - rdkit=2020.09
-    - acpype=2020.10
+    - gromacs >=2019.1
+    - rdkit
+    - acpype
     - tqdm
 
 test:
diff --git a/recipes/gromacs_py/run_test.sh b/recipes/gromacs_py/run_test.sh
deleted file mode 100755
index 98a82bd3d586b..0000000000000
--- a/recipes/gromacs_py/run_test.sh
+++ /dev/null
@@ -1,3 +0,0 @@
-#!/usr/bin/env sh
-
-pytest --pyargs gromacs_py --doctest-modules
\ No newline at end of file
diff --git a/recipes/groot/build.sh b/recipes/groot/build.sh
index e318969a521b2..1bd6e5d9aaee4 100644
--- a/recipes/groot/build.sh
+++ b/recipes/groot/build.sh
@@ -1,7 +1,12 @@
-#!/bin/bash
+#!/usr/bin/env bash
+
+set -xe
+
 mkdir -p $PREFIX/bin
 
 go get -d -v ./...
+go get github.com/dgryski/go-metro
+go get github.com/dgryski/go-spooky
 go test -v ./...
 go build -o groot
 
diff --git a/recipes/groot/meta.yaml b/recipes/groot/meta.yaml
index 20d9c2ec28ccd..b824757d8e733 100644
--- a/recipes/groot/meta.yaml
+++ b/recipes/groot/meta.yaml
@@ -9,7 +9,9 @@ source:
   sha256: 46c6f67990397c2230f580be40697e4fdc284fbe7f0a38999a05d81cd6da5928
 
 build:
-  number: 2
+  number: 3
+  run_exports:
+    - {{ pin_subpackage('groot', max_pin='x') }}
 
 requirements:
   build:
@@ -27,5 +29,7 @@ about:
   summary: A tool for resistome profiling of metagenomic samples.
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   skip-lints:
     - should_be_noarch_generic
diff --git a/recipes/gsalign/build.sh b/recipes/gsalign/build.sh
index e5b6c14c7cf09..76dd0bcd47c43 100755
--- a/recipes/gsalign/build.sh
+++ b/recipes/gsalign/build.sh
@@ -1,4 +1,7 @@
-#!/bin/bash
+#!/usr/bin/env bash
+
+set -xe
+
 mkdir -p ${PREFIX}/bin
 
 # index
@@ -7,7 +10,16 @@ make CC=$CC FLAGS="$CFLAGS" LIBS="$LDFLAGS -lm -lz"
 cp bwt_index $PREFIX/bin
 popd
 
+ARCH_FLAGS=""
+case $(uname -m) in
+    x86_64)
+        ARCH_FLAGS="-m64 -msse4.2 -mpopcnt"
+        ;;
+    *)
+        ;;
+esac
+
 # GSAlign
 pushd src
-make CXX=$CXX FLAGS="$CXXFLAGS -I$PREFIX/include -Wall -D NDEBUG -O3 -m64 -msse4.2 -mpopcnt -fPIC" LIB="$LDFLAGS -lz -lm -lpthread"
+make CXX=$CXX FLAGS="$CXXFLAGS -I$PREFIX/include -Wall -D NDEBUG -O3 ${ARCH_FLAGS} -fPIC" LIB="$LDFLAGS -lz -lm -lpthread" -j ${CPU_COUNT}
 cp GSAlign $PREFIX/bin
diff --git a/recipes/gsalign/meta.yaml b/recipes/gsalign/meta.yaml
index 263c5c66da47e..68e3cfe77ba5f 100644
--- a/recipes/gsalign/meta.yaml
+++ b/recipes/gsalign/meta.yaml
@@ -7,9 +7,13 @@ package:
 source:
   url: https://github.com/hsinnan75/GSAlign/archive/{{ version }}.tar.gz
   sha256: '832eb3f570756cf6c0165036994a184e8882b152f3163d50367caa9d0815f619'
+  patches:
+    - support-linux-aarch64.patch # [linux and aarch64]
 
 build:
-  number: 4
+  number: 5
+  run_exports:
+    - {{ pin_subpackage('gsalign', max_pin='x') }}
 
 requirements:
   build:
@@ -38,5 +42,7 @@ about:
   description: "an ultra-fast sequence alignment tool for genome sequence comparison."
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - doi:10.1101/782193
diff --git a/recipes/gsalign/support-linux-aarch64.patch b/recipes/gsalign/support-linux-aarch64.patch
new file mode 100644
index 0000000000000..841a50566f7d3
--- /dev/null
+++ b/recipes/gsalign/support-linux-aarch64.patch
@@ -0,0 +1,9352 @@
+From df8b1fb962aa81559f93e52a3bea3034c27c0a72 Mon Sep 17 00:00:00 2001
+From: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
+Date: Wed, 24 Apr 2024 15:49:12 +0300
+Subject: [PATCH 1/5] Use sse2neon.h for Linux ARM64 support
+
+https://github.com/DLTcollab/sse2neon/blob/ab7a34794507332edfa93b824b256f41e43f9e31/sse2neon.h
+from today (24.04.2024)
+
+Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
+---
+ src/ksw2_alignment.cpp |    5 +
+ src/sse2neon.h         | 9284 ++++++++++++++++++++++++++++++++++++++++
+ 2 files changed, 9289 insertions(+)
+ create mode 100644 src/sse2neon.h
+
+diff --git a/src/ksw2_alignment.cpp b/src/ksw2_alignment.cpp
+index db09c6a..d01c7ac 100644
+--- a/src/ksw2_alignment.cpp
++++ b/src/ksw2_alignment.cpp
+@@ -1,6 +1,11 @@
+ #include "structure.h"
++
++#ifdef __aarch64__
++#include "sse2neon.h"
++#else
+ #include <emmintrin.h>
+ #include <smmintrin.h>
++#endif
+ 
+ //copyright: Heng Li
+ 
+diff --git a/src/sse2neon.h b/src/sse2neon.h
+new file mode 100644
+index 0000000..48da95f
+--- /dev/null
++++ b/src/sse2neon.h
+@@ -0,0 +1,9284 @@
++#ifndef SSE2NEON_H
++#define SSE2NEON_H
++
++/*
++ * sse2neon is freely redistributable under the MIT License.
++ *
++ * Copyright (c) 2015-2024 SSE2NEON Contributors.
++ *
++ * Permission is hereby granted, free of charge, to any person obtaining a copy
++ * of this software and associated documentation files (the "Software"), to deal
++ * in the Software without restriction, including without limitation the rights
++ * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
++ * copies of the Software, and to permit persons to whom the Software is
++ * furnished to do so, subject to the following conditions:
++ *
++ * The above copyright notice and this permission notice shall be included in
++ * all copies or substantial portions of the Software.
++ *
++ * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
++ * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
++ * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
++ * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
++ * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
++ * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
++ * SOFTWARE.
++ */
++
++// This header file provides a simple API translation layer
++// between SSE intrinsics to their corresponding Arm/Aarch64 NEON versions
++//
++// Contributors to this work are:
++//   John W. Ratcliff <jratcliffscarab@gmail.com>
++//   Brandon Rowlett <browlett@nvidia.com>
++//   Ken Fast <kfast@gdeb.com>
++//   Eric van Beurden <evanbeurden@nvidia.com>
++//   Alexander Potylitsin <apotylitsin@nvidia.com>
++//   Hasindu Gamaarachchi <hasindu2008@gmail.com>
++//   Jim Huang <jserv@ccns.ncku.edu.tw>
++//   Mark Cheng <marktwtn@gmail.com>
++//   Malcolm James MacLeod <malcolm@gulden.com>
++//   Devin Hussey (easyaspi314) <husseydevin@gmail.com>
++//   Sebastian Pop <spop@amazon.com>
++//   Developer Ecosystem Engineering <DeveloperEcosystemEngineering@apple.com>
++//   Danila Kutenin <danilak@google.com>
++//   François Turban (JishinMaster) <francois.turban@gmail.com>
++//   Pei-Hsuan Hung <afcidk@gmail.com>
++//   Yang-Hao Yuan <yuanyanghau@gmail.com>
++//   Syoyo Fujita <syoyo@lighttransport.com>
++//   Brecht Van Lommel <brecht@blender.org>
++//   Jonathan Hue <jhue@adobe.com>
++//   Cuda Chen <clh960524@gmail.com>
++//   Aymen Qader <aymen.qader@arm.com>
++//   Anthony Roberts <anthony.roberts@linaro.org>
++
++/* Tunable configurations */
++
++/* Enable precise implementation of math operations
++ * This would slow down the computation a bit, but gives consistent result with
++ * x86 SSE. (e.g. would solve a hole or NaN pixel in the rendering result)
++ */
++/* _mm_min|max_ps|ss|pd|sd */
++#ifndef SSE2NEON_PRECISE_MINMAX
++#define SSE2NEON_PRECISE_MINMAX (0)
++#endif
++/* _mm_rcp_ps and _mm_div_ps */
++#ifndef SSE2NEON_PRECISE_DIV
++#define SSE2NEON_PRECISE_DIV (0)
++#endif
++/* _mm_sqrt_ps and _mm_rsqrt_ps */
++#ifndef SSE2NEON_PRECISE_SQRT
++#define SSE2NEON_PRECISE_SQRT (0)
++#endif
++/* _mm_dp_pd */
++#ifndef SSE2NEON_PRECISE_DP
++#define SSE2NEON_PRECISE_DP (0)
++#endif
++
++/* Enable inclusion of windows.h on MSVC platforms
++ * This makes _mm_clflush functional on windows, as there is no builtin.
++ */
++#ifndef SSE2NEON_INCLUDE_WINDOWS_H
++#define SSE2NEON_INCLUDE_WINDOWS_H (0)
++#endif
++
++/* compiler specific definitions */
++#if defined(__GNUC__) || defined(__clang__)
++#pragma push_macro("FORCE_INLINE")
++#pragma push_macro("ALIGN_STRUCT")
++#define FORCE_INLINE static inline __attribute__((always_inline))
++#define ALIGN_STRUCT(x) __attribute__((aligned(x)))
++#define _sse2neon_likely(x) __builtin_expect(!!(x), 1)
++#define _sse2neon_unlikely(x) __builtin_expect(!!(x), 0)
++#elif defined(_MSC_VER)
++#if _MSVC_TRADITIONAL
++#error Using the traditional MSVC preprocessor is not supported! Use /Zc:preprocessor instead.
++#endif
++#ifndef FORCE_INLINE
++#define FORCE_INLINE static inline
++#endif
++#ifndef ALIGN_STRUCT
++#define ALIGN_STRUCT(x) __declspec(align(x))
++#endif
++#define _sse2neon_likely(x) (x)
++#define _sse2neon_unlikely(x) (x)
++#else
++#pragma message("Macro name collisions may happen with unsupported compilers.")
++#endif
++
++#if !defined(__clang__) && defined(__GNUC__) && __GNUC__ < 10
++#warning "GCC versions earlier than 10 are not supported."
++#endif
++
++/* C language does not allow initializing a variable with a function call. */
++#ifdef __cplusplus
++#define _sse2neon_const static const
++#else
++#define _sse2neon_const const
++#endif
++
++#include <stdint.h>
++#include <stdlib.h>
++
++#if defined(_WIN32)
++/* Definitions for _mm_{malloc,free} are provided by <malloc.h>
++ * from both MinGW-w64 and MSVC.
++ */
++#define SSE2NEON_ALLOC_DEFINED
++#endif
++
++/* If using MSVC */
++#ifdef _MSC_VER
++#include <intrin.h>
++#if SSE2NEON_INCLUDE_WINDOWS_H
++#include <processthreadsapi.h>
++#include <windows.h>
++#endif
++
++#if !defined(__cplusplus)
++#error SSE2NEON only supports C++ compilation with this compiler
++#endif
++
++#ifdef SSE2NEON_ALLOC_DEFINED
++#include <malloc.h>
++#endif
++
++#if (defined(_M_AMD64) || defined(__x86_64__)) || \
++    (defined(_M_ARM64) || defined(__arm64__))
++#define SSE2NEON_HAS_BITSCAN64
++#endif
++#endif
++
++#if defined(__GNUC__) || defined(__clang__)
++#define _sse2neon_define0(type, s, body) \
++    __extension__({                      \
++        type _a = (s);                   \
++        body                             \
++    })
++#define _sse2neon_define1(type, s, body) \
++    __extension__({                      \
++        type _a = (s);                   \
++        body                             \
++    })
++#define _sse2neon_define2(type, a, b, body) \
++    __extension__({                         \
++        type _a = (a), _b = (b);            \
++        body                                \
++    })
++#define _sse2neon_return(ret) (ret)
++#else
++#define _sse2neon_define0(type, a, body) [=](type _a) { body }(a)
++#define _sse2neon_define1(type, a, body) [](type _a) { body }(a)
++#define _sse2neon_define2(type, a, b, body) \
++    [](type _a, type _b) { body }((a), (b))
++#define _sse2neon_return(ret) return ret
++#endif
++
++#define _sse2neon_init(...) \
++    {                       \
++        __VA_ARGS__         \
++    }
++
++/* Compiler barrier */
++#if defined(_MSC_VER)
++#define SSE2NEON_BARRIER() _ReadWriteBarrier()
++#else
++#define SSE2NEON_BARRIER()                     \
++    do {                                       \
++        __asm__ __volatile__("" ::: "memory"); \
++        (void) 0;                              \
++    } while (0)
++#endif
++
++/* Memory barriers
++ * __atomic_thread_fence does not include a compiler barrier; instead,
++ * the barrier is part of __atomic_load/__atomic_store's "volatile-like"
++ * semantics.
++ */
++#if defined(__STDC_VERSION__) && (__STDC_VERSION__ >= 201112L)
++#include <stdatomic.h>
++#endif
++
++FORCE_INLINE void _sse2neon_smp_mb(void)
++{
++    SSE2NEON_BARRIER();
++#if defined(__STDC_VERSION__) && (__STDC_VERSION__ >= 201112L) && \
++    !defined(__STDC_NO_ATOMICS__)
++    atomic_thread_fence(memory_order_seq_cst);
++#elif defined(__GNUC__) || defined(__clang__)
++    __atomic_thread_fence(__ATOMIC_SEQ_CST);
++#else /* MSVC */
++    __dmb(_ARM64_BARRIER_ISH);
++#endif
++}
++
++/* Architecture-specific build options */
++/* FIXME: #pragma GCC push_options is only available on GCC */
++#if defined(__GNUC__)
++#if defined(__arm__) && __ARM_ARCH == 7
++/* According to ARM C Language Extensions Architecture specification,
++ * __ARM_NEON is defined to a value indicating the Advanced SIMD (NEON)
++ * architecture supported.
++ */
++#if !defined(__ARM_NEON) || !defined(__ARM_NEON__)
++#error "You must enable NEON instructions (e.g. -mfpu=neon) to use SSE2NEON."
++#endif
++#if !defined(__clang__)
++#pragma GCC push_options
++#pragma GCC target("fpu=neon")
++#endif
++#elif defined(__aarch64__) || defined(_M_ARM64)
++#if !defined(__clang__) && !defined(_MSC_VER)
++#pragma GCC push_options
++#pragma GCC target("+simd")
++#endif
++#elif __ARM_ARCH == 8
++#if !defined(__ARM_NEON) || !defined(__ARM_NEON__)
++#error \
++    "You must enable NEON instructions (e.g. -mfpu=neon-fp-armv8) to use SSE2NEON."
++#endif
++#if !defined(__clang__) && !defined(_MSC_VER)
++#pragma GCC push_options
++#endif
++#else
++#error \
++    "Unsupported target. Must be either ARMv7-A+NEON or ARMv8-A \
++(you could try setting target explicitly with -march or -mcpu)"
++#endif
++#endif
++
++#include <arm_neon.h>
++#if (!defined(__aarch64__) && !defined(_M_ARM64)) && (__ARM_ARCH == 8)
++#if defined __has_include && __has_include(<arm_acle.h>)
++#include <arm_acle.h>
++#endif
++#endif
++
++/* Apple Silicon cache lines are double of what is commonly used by Intel, AMD
++ * and other Arm microarchitectures use.
++ * From sysctl -a on Apple M1:
++ * hw.cachelinesize: 128
++ */
++#if defined(__APPLE__) && (defined(__aarch64__) || defined(__arm64__))
++#define SSE2NEON_CACHELINE_SIZE 128
++#else
++#define SSE2NEON_CACHELINE_SIZE 64
++#endif
++
++/* Rounding functions require either Aarch64 instructions or libm fallback */
++#if !defined(__aarch64__) && !defined(_M_ARM64)
++#include <math.h>
++#endif
++
++/* On ARMv7, some registers, such as PMUSERENR and PMCCNTR, are read-only
++ * or even not accessible in user mode.
++ * To write or access to these registers in user mode,
++ * we have to perform syscall instead.
++ */
++#if (!defined(__aarch64__) && !defined(_M_ARM64))
++#include <sys/time.h>
++#endif
++
++/* "__has_builtin" can be used to query support for built-in functions
++ * provided by gcc/clang and other compilers that support it.
++ */
++#ifndef __has_builtin /* GCC prior to 10 or non-clang compilers */
++/* Compatibility with gcc <= 9 */
++#if defined(__GNUC__) && (__GNUC__ <= 9)
++#define __has_builtin(x) HAS##x
++#define HAS__builtin_popcount 1
++#define HAS__builtin_popcountll 1
++
++// __builtin_shuffle introduced in GCC 4.7.0
++#if (__GNUC__ >= 5) || ((__GNUC__ == 4) && (__GNUC_MINOR__ >= 7))
++#define HAS__builtin_shuffle 1
++#else
++#define HAS__builtin_shuffle 0
++#endif
++
++#define HAS__builtin_shufflevector 0
++#define HAS__builtin_nontemporal_store 0
++#else
++#define __has_builtin(x) 0
++#endif
++#endif
++
++/**
++ * MACRO for shuffle parameter for _mm_shuffle_ps().
++ * Argument fp3 is a digit[0123] that represents the fp from argument "b"
++ * of mm_shuffle_ps that will be placed in fp3 of result. fp2 is the same
++ * for fp2 in result. fp1 is a digit[0123] that represents the fp from
++ * argument "a" of mm_shuffle_ps that will be places in fp1 of result.
++ * fp0 is the same for fp0 of result.
++ */
++#define _MM_SHUFFLE(fp3, fp2, fp1, fp0) \
++    (((fp3) << 6) | ((fp2) << 4) | ((fp1) << 2) | ((fp0)))
++
++#if __has_builtin(__builtin_shufflevector)
++#define _sse2neon_shuffle(type, a, b, ...) \
++    __builtin_shufflevector(a, b, __VA_ARGS__)
++#elif __has_builtin(__builtin_shuffle)
++#define _sse2neon_shuffle(type, a, b, ...) \
++    __extension__({                        \
++        type tmp = {__VA_ARGS__};          \
++        __builtin_shuffle(a, b, tmp);      \
++    })
++#endif
++
++#ifdef _sse2neon_shuffle
++#define vshuffle_s16(a, b, ...) _sse2neon_shuffle(int16x4_t, a, b, __VA_ARGS__)
++#define vshuffleq_s16(a, b, ...) _sse2neon_shuffle(int16x8_t, a, b, __VA_ARGS__)
++#define vshuffle_s32(a, b, ...) _sse2neon_shuffle(int32x2_t, a, b, __VA_ARGS__)
++#define vshuffleq_s32(a, b, ...) _sse2neon_shuffle(int32x4_t, a, b, __VA_ARGS__)
++#define vshuffle_s64(a, b, ...) _sse2neon_shuffle(int64x1_t, a, b, __VA_ARGS__)
++#define vshuffleq_s64(a, b, ...) _sse2neon_shuffle(int64x2_t, a, b, __VA_ARGS__)
++#endif
++
++/* Rounding mode macros. */
++#define _MM_FROUND_TO_NEAREST_INT 0x00
++#define _MM_FROUND_TO_NEG_INF 0x01
++#define _MM_FROUND_TO_POS_INF 0x02
++#define _MM_FROUND_TO_ZERO 0x03
++#define _MM_FROUND_CUR_DIRECTION 0x04
++#define _MM_FROUND_NO_EXC 0x08
++#define _MM_FROUND_RAISE_EXC 0x00
++#define _MM_FROUND_NINT (_MM_FROUND_TO_NEAREST_INT | _MM_FROUND_RAISE_EXC)
++#define _MM_FROUND_FLOOR (_MM_FROUND_TO_NEG_INF | _MM_FROUND_RAISE_EXC)
++#define _MM_FROUND_CEIL (_MM_FROUND_TO_POS_INF | _MM_FROUND_RAISE_EXC)
++#define _MM_FROUND_TRUNC (_MM_FROUND_TO_ZERO | _MM_FROUND_RAISE_EXC)
++#define _MM_FROUND_RINT (_MM_FROUND_CUR_DIRECTION | _MM_FROUND_RAISE_EXC)
++#define _MM_FROUND_NEARBYINT (_MM_FROUND_CUR_DIRECTION | _MM_FROUND_NO_EXC)
++#define _MM_ROUND_NEAREST 0x0000
++#define _MM_ROUND_DOWN 0x2000
++#define _MM_ROUND_UP 0x4000
++#define _MM_ROUND_TOWARD_ZERO 0x6000
++/* Flush zero mode macros. */
++#define _MM_FLUSH_ZERO_MASK 0x8000
++#define _MM_FLUSH_ZERO_ON 0x8000
++#define _MM_FLUSH_ZERO_OFF 0x0000
++/* Denormals are zeros mode macros. */
++#define _MM_DENORMALS_ZERO_MASK 0x0040
++#define _MM_DENORMALS_ZERO_ON 0x0040
++#define _MM_DENORMALS_ZERO_OFF 0x0000
++
++/* indicate immediate constant argument in a given range */
++#define __constrange(a, b) const
++
++/* A few intrinsics accept traditional data types like ints or floats, but
++ * most operate on data types that are specific to SSE.
++ * If a vector type ends in d, it contains doubles, and if it does not have
++ * a suffix, it contains floats. An integer vector type can contain any type
++ * of integer, from chars to shorts to unsigned long longs.
++ */
++typedef int64x1_t __m64;
++typedef float32x4_t __m128; /* 128-bit vector containing 4 floats */
++// On ARM 32-bit architecture, the float64x2_t is not supported.
++// The data type __m128d should be represented in a different way for related
++// intrinsic conversion.
++#if defined(__aarch64__) || defined(_M_ARM64)
++typedef float64x2_t __m128d; /* 128-bit vector containing 2 doubles */
++#else
++typedef float32x4_t __m128d;
++#endif
++typedef int64x2_t __m128i; /* 128-bit vector containing integers */
++
++// __int64 is defined in the Intrinsics Guide which maps to different datatype
++// in different data model
++#if !(defined(_WIN32) || defined(_WIN64) || defined(__int64))
++#if (defined(__x86_64__) || defined(__i386__))
++#define __int64 long long
++#else
++#define __int64 int64_t
++#endif
++#endif
++
++/* type-safe casting between types */
++
++#define vreinterpretq_m128_f16(x) vreinterpretq_f32_f16(x)
++#define vreinterpretq_m128_f32(x) (x)
++#define vreinterpretq_m128_f64(x) vreinterpretq_f32_f64(x)
++
++#define vreinterpretq_m128_u8(x) vreinterpretq_f32_u8(x)
++#define vreinterpretq_m128_u16(x) vreinterpretq_f32_u16(x)
++#define vreinterpretq_m128_u32(x) vreinterpretq_f32_u32(x)
++#define vreinterpretq_m128_u64(x) vreinterpretq_f32_u64(x)
++
++#define vreinterpretq_m128_s8(x) vreinterpretq_f32_s8(x)
++#define vreinterpretq_m128_s16(x) vreinterpretq_f32_s16(x)
++#define vreinterpretq_m128_s32(x) vreinterpretq_f32_s32(x)
++#define vreinterpretq_m128_s64(x) vreinterpretq_f32_s64(x)
++
++#define vreinterpretq_f16_m128(x) vreinterpretq_f16_f32(x)
++#define vreinterpretq_f32_m128(x) (x)
++#define vreinterpretq_f64_m128(x) vreinterpretq_f64_f32(x)
++
++#define vreinterpretq_u8_m128(x) vreinterpretq_u8_f32(x)
++#define vreinterpretq_u16_m128(x) vreinterpretq_u16_f32(x)
++#define vreinterpretq_u32_m128(x) vreinterpretq_u32_f32(x)
++#define vreinterpretq_u64_m128(x) vreinterpretq_u64_f32(x)
++
++#define vreinterpretq_s8_m128(x) vreinterpretq_s8_f32(x)
++#define vreinterpretq_s16_m128(x) vreinterpretq_s16_f32(x)
++#define vreinterpretq_s32_m128(x) vreinterpretq_s32_f32(x)
++#define vreinterpretq_s64_m128(x) vreinterpretq_s64_f32(x)
++
++#define vreinterpretq_m128i_s8(x) vreinterpretq_s64_s8(x)
++#define vreinterpretq_m128i_s16(x) vreinterpretq_s64_s16(x)
++#define vreinterpretq_m128i_s32(x) vreinterpretq_s64_s32(x)
++#define vreinterpretq_m128i_s64(x) (x)
++
++#define vreinterpretq_m128i_u8(x) vreinterpretq_s64_u8(x)
++#define vreinterpretq_m128i_u16(x) vreinterpretq_s64_u16(x)
++#define vreinterpretq_m128i_u32(x) vreinterpretq_s64_u32(x)
++#define vreinterpretq_m128i_u64(x) vreinterpretq_s64_u64(x)
++
++#define vreinterpretq_f32_m128i(x) vreinterpretq_f32_s64(x)
++#define vreinterpretq_f64_m128i(x) vreinterpretq_f64_s64(x)
++
++#define vreinterpretq_s8_m128i(x) vreinterpretq_s8_s64(x)
++#define vreinterpretq_s16_m128i(x) vreinterpretq_s16_s64(x)
++#define vreinterpretq_s32_m128i(x) vreinterpretq_s32_s64(x)
++#define vreinterpretq_s64_m128i(x) (x)
++
++#define vreinterpretq_u8_m128i(x) vreinterpretq_u8_s64(x)
++#define vreinterpretq_u16_m128i(x) vreinterpretq_u16_s64(x)
++#define vreinterpretq_u32_m128i(x) vreinterpretq_u32_s64(x)
++#define vreinterpretq_u64_m128i(x) vreinterpretq_u64_s64(x)
++
++#define vreinterpret_m64_s8(x) vreinterpret_s64_s8(x)
++#define vreinterpret_m64_s16(x) vreinterpret_s64_s16(x)
++#define vreinterpret_m64_s32(x) vreinterpret_s64_s32(x)
++#define vreinterpret_m64_s64(x) (x)
++
++#define vreinterpret_m64_u8(x) vreinterpret_s64_u8(x)
++#define vreinterpret_m64_u16(x) vreinterpret_s64_u16(x)
++#define vreinterpret_m64_u32(x) vreinterpret_s64_u32(x)
++#define vreinterpret_m64_u64(x) vreinterpret_s64_u64(x)
++
++#define vreinterpret_m64_f16(x) vreinterpret_s64_f16(x)
++#define vreinterpret_m64_f32(x) vreinterpret_s64_f32(x)
++#define vreinterpret_m64_f64(x) vreinterpret_s64_f64(x)
++
++#define vreinterpret_u8_m64(x) vreinterpret_u8_s64(x)
++#define vreinterpret_u16_m64(x) vreinterpret_u16_s64(x)
++#define vreinterpret_u32_m64(x) vreinterpret_u32_s64(x)
++#define vreinterpret_u64_m64(x) vreinterpret_u64_s64(x)
++
++#define vreinterpret_s8_m64(x) vreinterpret_s8_s64(x)
++#define vreinterpret_s16_m64(x) vreinterpret_s16_s64(x)
++#define vreinterpret_s32_m64(x) vreinterpret_s32_s64(x)
++#define vreinterpret_s64_m64(x) (x)
++
++#define vreinterpret_f32_m64(x) vreinterpret_f32_s64(x)
++
++#if defined(__aarch64__) || defined(_M_ARM64)
++#define vreinterpretq_m128d_s32(x) vreinterpretq_f64_s32(x)
++#define vreinterpretq_m128d_s64(x) vreinterpretq_f64_s64(x)
++
++#define vreinterpretq_m128d_u64(x) vreinterpretq_f64_u64(x)
++
++#define vreinterpretq_m128d_f32(x) vreinterpretq_f64_f32(x)
++#define vreinterpretq_m128d_f64(x) (x)
++
++#define vreinterpretq_s64_m128d(x) vreinterpretq_s64_f64(x)
++
++#define vreinterpretq_u32_m128d(x) vreinterpretq_u32_f64(x)
++#define vreinterpretq_u64_m128d(x) vreinterpretq_u64_f64(x)
++
++#define vreinterpretq_f64_m128d(x) (x)
++#define vreinterpretq_f32_m128d(x) vreinterpretq_f32_f64(x)
++#else
++#define vreinterpretq_m128d_s32(x) vreinterpretq_f32_s32(x)
++#define vreinterpretq_m128d_s64(x) vreinterpretq_f32_s64(x)
++
++#define vreinterpretq_m128d_u32(x) vreinterpretq_f32_u32(x)
++#define vreinterpretq_m128d_u64(x) vreinterpretq_f32_u64(x)
++
++#define vreinterpretq_m128d_f32(x) (x)
++
++#define vreinterpretq_s64_m128d(x) vreinterpretq_s64_f32(x)
++
++#define vreinterpretq_u32_m128d(x) vreinterpretq_u32_f32(x)
++#define vreinterpretq_u64_m128d(x) vreinterpretq_u64_f32(x)
++
++#define vreinterpretq_f32_m128d(x) (x)
++#endif
++
++// A struct is defined in this header file called 'SIMDVec' which can be used
++// by applications which attempt to access the contents of an __m128 struct
++// directly.  It is important to note that accessing the __m128 struct directly
++// is bad coding practice by Microsoft: @see:
++// https://learn.microsoft.com/en-us/cpp/cpp/m128
++//
++// However, some legacy source code may try to access the contents of an __m128
++// struct directly so the developer can use the SIMDVec as an alias for it.  Any
++// casting must be done manually by the developer, as you cannot cast or
++// otherwise alias the base NEON data type for intrinsic operations.
++//
++// union intended to allow direct access to an __m128 variable using the names
++// that the MSVC compiler provides.  This union should really only be used when
++// trying to access the members of the vector as integer values.  GCC/clang
++// allow native access to the float members through a simple array access
++// operator (in C since 4.6, in C++ since 4.8).
++//
++// Ideally direct accesses to SIMD vectors should not be used since it can cause
++// a performance hit.  If it really is needed however, the original __m128
++// variable can be aliased with a pointer to this union and used to access
++// individual components.  The use of this union should be hidden behind a macro
++// that is used throughout the codebase to access the members instead of always
++// declaring this type of variable.
++typedef union ALIGN_STRUCT(16) SIMDVec {
++    float m128_f32[4];     // as floats - DON'T USE. Added for convenience.
++    int8_t m128_i8[16];    // as signed 8-bit integers.
++    int16_t m128_i16[8];   // as signed 16-bit integers.
++    int32_t m128_i32[4];   // as signed 32-bit integers.
++    int64_t m128_i64[2];   // as signed 64-bit integers.
++    uint8_t m128_u8[16];   // as unsigned 8-bit integers.
++    uint16_t m128_u16[8];  // as unsigned 16-bit integers.
++    uint32_t m128_u32[4];  // as unsigned 32-bit integers.
++    uint64_t m128_u64[2];  // as unsigned 64-bit integers.
++} SIMDVec;
++
++// casting using SIMDVec
++#define vreinterpretq_nth_u64_m128i(x, n) (((SIMDVec *) &x)->m128_u64[n])
++#define vreinterpretq_nth_u32_m128i(x, n) (((SIMDVec *) &x)->m128_u32[n])
++#define vreinterpretq_nth_u8_m128i(x, n) (((SIMDVec *) &x)->m128_u8[n])
++
++/* SSE macros */
++#define _MM_GET_FLUSH_ZERO_MODE _sse2neon_mm_get_flush_zero_mode
++#define _MM_SET_FLUSH_ZERO_MODE _sse2neon_mm_set_flush_zero_mode
++#define _MM_GET_DENORMALS_ZERO_MODE _sse2neon_mm_get_denormals_zero_mode
++#define _MM_SET_DENORMALS_ZERO_MODE _sse2neon_mm_set_denormals_zero_mode
++
++// Function declaration
++// SSE
++FORCE_INLINE unsigned int _MM_GET_ROUNDING_MODE(void);
++FORCE_INLINE __m128 _mm_move_ss(__m128, __m128);
++FORCE_INLINE __m128 _mm_or_ps(__m128, __m128);
++FORCE_INLINE __m128 _mm_set_ps1(float);
++FORCE_INLINE __m128 _mm_setzero_ps(void);
++// SSE2
++FORCE_INLINE __m128i _mm_and_si128(__m128i, __m128i);
++FORCE_INLINE __m128i _mm_castps_si128(__m128);
++FORCE_INLINE __m128i _mm_cmpeq_epi32(__m128i, __m128i);
++FORCE_INLINE __m128i _mm_cvtps_epi32(__m128);
++FORCE_INLINE __m128d _mm_move_sd(__m128d, __m128d);
++FORCE_INLINE __m128i _mm_or_si128(__m128i, __m128i);
++FORCE_INLINE __m128i _mm_set_epi32(int, int, int, int);
++FORCE_INLINE __m128i _mm_set_epi64x(int64_t, int64_t);
++FORCE_INLINE __m128d _mm_set_pd(double, double);
++FORCE_INLINE __m128i _mm_set1_epi32(int);
++FORCE_INLINE __m128i _mm_setzero_si128(void);
++// SSE4.1
++FORCE_INLINE __m128d _mm_ceil_pd(__m128d);
++FORCE_INLINE __m128 _mm_ceil_ps(__m128);
++FORCE_INLINE __m128d _mm_floor_pd(__m128d);
++FORCE_INLINE __m128 _mm_floor_ps(__m128);
++FORCE_INLINE __m128d _mm_round_pd(__m128d, int);
++FORCE_INLINE __m128 _mm_round_ps(__m128, int);
++// SSE4.2
++FORCE_INLINE uint32_t _mm_crc32_u8(uint32_t, uint8_t);
++
++/* Backwards compatibility for compilers with lack of specific type support */
++
++// Older gcc does not define vld1q_u8_x4 type
++#if defined(__GNUC__) && !defined(__clang__) &&                        \
++    ((__GNUC__ <= 13 && defined(__arm__)) ||                           \
++     (__GNUC__ == 10 && __GNUC_MINOR__ < 3 && defined(__aarch64__)) || \
++     (__GNUC__ <= 9 && defined(__aarch64__)))
++FORCE_INLINE uint8x16x4_t _sse2neon_vld1q_u8_x4(const uint8_t *p)
++{
++    uint8x16x4_t ret;
++    ret.val[0] = vld1q_u8(p + 0);
++    ret.val[1] = vld1q_u8(p + 16);
++    ret.val[2] = vld1q_u8(p + 32);
++    ret.val[3] = vld1q_u8(p + 48);
++    return ret;
++}
++#else
++// Wraps vld1q_u8_x4
++FORCE_INLINE uint8x16x4_t _sse2neon_vld1q_u8_x4(const uint8_t *p)
++{
++    return vld1q_u8_x4(p);
++}
++#endif
++
++#if !defined(__aarch64__) && !defined(_M_ARM64)
++/* emulate vaddv u8 variant */
++FORCE_INLINE uint8_t _sse2neon_vaddv_u8(uint8x8_t v8)
++{
++    const uint64x1_t v1 = vpaddl_u32(vpaddl_u16(vpaddl_u8(v8)));
++    return vget_lane_u8(vreinterpret_u8_u64(v1), 0);
++}
++#else
++// Wraps vaddv_u8
++FORCE_INLINE uint8_t _sse2neon_vaddv_u8(uint8x8_t v8)
++{
++    return vaddv_u8(v8);
++}
++#endif
++
++#if !defined(__aarch64__) && !defined(_M_ARM64)
++/* emulate vaddvq u8 variant */
++FORCE_INLINE uint8_t _sse2neon_vaddvq_u8(uint8x16_t a)
++{
++    uint8x8_t tmp = vpadd_u8(vget_low_u8(a), vget_high_u8(a));
++    uint8_t res = 0;
++    for (int i = 0; i < 8; ++i)
++        res += tmp[i];
++    return res;
++}
++#else
++// Wraps vaddvq_u8
++FORCE_INLINE uint8_t _sse2neon_vaddvq_u8(uint8x16_t a)
++{
++    return vaddvq_u8(a);
++}
++#endif
++
++#if !defined(__aarch64__) && !defined(_M_ARM64)
++/* emulate vaddvq u16 variant */
++FORCE_INLINE uint16_t _sse2neon_vaddvq_u16(uint16x8_t a)
++{
++    uint32x4_t m = vpaddlq_u16(a);
++    uint64x2_t n = vpaddlq_u32(m);
++    uint64x1_t o = vget_low_u64(n) + vget_high_u64(n);
++
++    return vget_lane_u32((uint32x2_t) o, 0);
++}
++#else
++// Wraps vaddvq_u16
++FORCE_INLINE uint16_t _sse2neon_vaddvq_u16(uint16x8_t a)
++{
++    return vaddvq_u16(a);
++}
++#endif
++
++/* Function Naming Conventions
++ * The naming convention of SSE intrinsics is straightforward. A generic SSE
++ * intrinsic function is given as follows:
++ *   _mm_<name>_<data_type>
++ *
++ * The parts of this format are given as follows:
++ * 1. <name> describes the operation performed by the intrinsic
++ * 2. <data_type> identifies the data type of the function's primary arguments
++ *
++ * This last part, <data_type>, is a little complicated. It identifies the
++ * content of the input values, and can be set to any of the following values:
++ * + ps - vectors contain floats (ps stands for packed single-precision)
++ * + pd - vectors contain doubles (pd stands for packed double-precision)
++ * + epi8/epi16/epi32/epi64 - vectors contain 8-bit/16-bit/32-bit/64-bit
++ *                            signed integers
++ * + epu8/epu16/epu32/epu64 - vectors contain 8-bit/16-bit/32-bit/64-bit
++ *                            unsigned integers
++ * + si128 - unspecified 128-bit vector or 256-bit vector
++ * + m128/m128i/m128d - identifies input vector types when they are different
++ *                      than the type of the returned vector
++ *
++ * For example, _mm_setzero_ps. The _mm implies that the function returns
++ * a 128-bit vector. The _ps at the end implies that the argument vectors
++ * contain floats.
++ *
++ * A complete example: Byte Shuffle - pshufb (_mm_shuffle_epi8)
++ *   // Set packed 16-bit integers. 128 bits, 8 short, per 16 bits
++ *   __m128i v_in = _mm_setr_epi16(1, 2, 3, 4, 5, 6, 7, 8);
++ *   // Set packed 8-bit integers
++ *   // 128 bits, 16 chars, per 8 bits
++ *   __m128i v_perm = _mm_setr_epi8(1, 0,  2,  3, 8, 9, 10, 11,
++ *                                  4, 5, 12, 13, 6, 7, 14, 15);
++ *   // Shuffle packed 8-bit integers
++ *   __m128i v_out = _mm_shuffle_epi8(v_in, v_perm); // pshufb
++ */
++
++/* Constants for use with _mm_prefetch. */
++enum _mm_hint {
++    _MM_HINT_NTA = 0, /* load data to L1 and L2 cache, mark it as NTA */
++    _MM_HINT_T0 = 1,  /* load data to L1 and L2 cache */
++    _MM_HINT_T1 = 2,  /* load data to L2 cache only */
++    _MM_HINT_T2 = 3,  /* load data to L2 cache only, mark it as NTA */
++};
++
++// The bit field mapping to the FPCR(floating-point control register)
++typedef struct {
++    uint16_t res0;
++    uint8_t res1 : 6;
++    uint8_t bit22 : 1;
++    uint8_t bit23 : 1;
++    uint8_t bit24 : 1;
++    uint8_t res2 : 7;
++#if defined(__aarch64__) || defined(_M_ARM64)
++    uint32_t res3;
++#endif
++} fpcr_bitfield;
++
++// Takes the upper 64 bits of a and places it in the low end of the result
++// Takes the lower 64 bits of b and places it into the high end of the result.
++FORCE_INLINE __m128 _mm_shuffle_ps_1032(__m128 a, __m128 b)
++{
++    float32x2_t a32 = vget_high_f32(vreinterpretq_f32_m128(a));
++    float32x2_t b10 = vget_low_f32(vreinterpretq_f32_m128(b));
++    return vreinterpretq_m128_f32(vcombine_f32(a32, b10));
++}
++
++// takes the lower two 32-bit values from a and swaps them and places in high
++// end of result takes the higher two 32 bit values from b and swaps them and
++// places in low end of result.
++FORCE_INLINE __m128 _mm_shuffle_ps_2301(__m128 a, __m128 b)
++{
++    float32x2_t a01 = vrev64_f32(vget_low_f32(vreinterpretq_f32_m128(a)));
++    float32x2_t b23 = vrev64_f32(vget_high_f32(vreinterpretq_f32_m128(b)));
++    return vreinterpretq_m128_f32(vcombine_f32(a01, b23));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_0321(__m128 a, __m128 b)
++{
++    float32x2_t a21 = vget_high_f32(
++        vextq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(a), 3));
++    float32x2_t b03 = vget_low_f32(
++        vextq_f32(vreinterpretq_f32_m128(b), vreinterpretq_f32_m128(b), 3));
++    return vreinterpretq_m128_f32(vcombine_f32(a21, b03));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_2103(__m128 a, __m128 b)
++{
++    float32x2_t a03 = vget_low_f32(
++        vextq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(a), 3));
++    float32x2_t b21 = vget_high_f32(
++        vextq_f32(vreinterpretq_f32_m128(b), vreinterpretq_f32_m128(b), 3));
++    return vreinterpretq_m128_f32(vcombine_f32(a03, b21));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_1010(__m128 a, __m128 b)
++{
++    float32x2_t a10 = vget_low_f32(vreinterpretq_f32_m128(a));
++    float32x2_t b10 = vget_low_f32(vreinterpretq_f32_m128(b));
++    return vreinterpretq_m128_f32(vcombine_f32(a10, b10));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_1001(__m128 a, __m128 b)
++{
++    float32x2_t a01 = vrev64_f32(vget_low_f32(vreinterpretq_f32_m128(a)));
++    float32x2_t b10 = vget_low_f32(vreinterpretq_f32_m128(b));
++    return vreinterpretq_m128_f32(vcombine_f32(a01, b10));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_0101(__m128 a, __m128 b)
++{
++    float32x2_t a01 = vrev64_f32(vget_low_f32(vreinterpretq_f32_m128(a)));
++    float32x2_t b01 = vrev64_f32(vget_low_f32(vreinterpretq_f32_m128(b)));
++    return vreinterpretq_m128_f32(vcombine_f32(a01, b01));
++}
++
++// keeps the low 64 bits of b in the low and puts the high 64 bits of a in the
++// high
++FORCE_INLINE __m128 _mm_shuffle_ps_3210(__m128 a, __m128 b)
++{
++    float32x2_t a10 = vget_low_f32(vreinterpretq_f32_m128(a));
++    float32x2_t b32 = vget_high_f32(vreinterpretq_f32_m128(b));
++    return vreinterpretq_m128_f32(vcombine_f32(a10, b32));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_0011(__m128 a, __m128 b)
++{
++    float32x2_t a11 = vdup_lane_f32(vget_low_f32(vreinterpretq_f32_m128(a)), 1);
++    float32x2_t b00 = vdup_lane_f32(vget_low_f32(vreinterpretq_f32_m128(b)), 0);
++    return vreinterpretq_m128_f32(vcombine_f32(a11, b00));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_0022(__m128 a, __m128 b)
++{
++    float32x2_t a22 =
++        vdup_lane_f32(vget_high_f32(vreinterpretq_f32_m128(a)), 0);
++    float32x2_t b00 = vdup_lane_f32(vget_low_f32(vreinterpretq_f32_m128(b)), 0);
++    return vreinterpretq_m128_f32(vcombine_f32(a22, b00));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_2200(__m128 a, __m128 b)
++{
++    float32x2_t a00 = vdup_lane_f32(vget_low_f32(vreinterpretq_f32_m128(a)), 0);
++    float32x2_t b22 =
++        vdup_lane_f32(vget_high_f32(vreinterpretq_f32_m128(b)), 0);
++    return vreinterpretq_m128_f32(vcombine_f32(a00, b22));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_3202(__m128 a, __m128 b)
++{
++    float32_t a0 = vgetq_lane_f32(vreinterpretq_f32_m128(a), 0);
++    float32x2_t a22 =
++        vdup_lane_f32(vget_high_f32(vreinterpretq_f32_m128(a)), 0);
++    float32x2_t a02 = vset_lane_f32(a0, a22, 1); /* TODO: use vzip ?*/
++    float32x2_t b32 = vget_high_f32(vreinterpretq_f32_m128(b));
++    return vreinterpretq_m128_f32(vcombine_f32(a02, b32));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_1133(__m128 a, __m128 b)
++{
++    float32x2_t a33 =
++        vdup_lane_f32(vget_high_f32(vreinterpretq_f32_m128(a)), 1);
++    float32x2_t b11 = vdup_lane_f32(vget_low_f32(vreinterpretq_f32_m128(b)), 1);
++    return vreinterpretq_m128_f32(vcombine_f32(a33, b11));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_2010(__m128 a, __m128 b)
++{
++    float32x2_t a10 = vget_low_f32(vreinterpretq_f32_m128(a));
++    float32_t b2 = vgetq_lane_f32(vreinterpretq_f32_m128(b), 2);
++    float32x2_t b00 = vdup_lane_f32(vget_low_f32(vreinterpretq_f32_m128(b)), 0);
++    float32x2_t b20 = vset_lane_f32(b2, b00, 1);
++    return vreinterpretq_m128_f32(vcombine_f32(a10, b20));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_2001(__m128 a, __m128 b)
++{
++    float32x2_t a01 = vrev64_f32(vget_low_f32(vreinterpretq_f32_m128(a)));
++    float32_t b2 = vgetq_lane_f32(b, 2);
++    float32x2_t b00 = vdup_lane_f32(vget_low_f32(vreinterpretq_f32_m128(b)), 0);
++    float32x2_t b20 = vset_lane_f32(b2, b00, 1);
++    return vreinterpretq_m128_f32(vcombine_f32(a01, b20));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_2032(__m128 a, __m128 b)
++{
++    float32x2_t a32 = vget_high_f32(vreinterpretq_f32_m128(a));
++    float32_t b2 = vgetq_lane_f32(b, 2);
++    float32x2_t b00 = vdup_lane_f32(vget_low_f32(vreinterpretq_f32_m128(b)), 0);
++    float32x2_t b20 = vset_lane_f32(b2, b00, 1);
++    return vreinterpretq_m128_f32(vcombine_f32(a32, b20));
++}
++
++// For MSVC, we check only if it is ARM64, as every single ARM64 processor
++// supported by WoA has crypto extensions. If this changes in the future,
++// this can be verified via the runtime-only method of:
++// IsProcessorFeaturePresent(PF_ARM_V8_CRYPTO_INSTRUCTIONS_AVAILABLE)
++#if (defined(_M_ARM64) && !defined(__clang__)) || \
++    (defined(__ARM_FEATURE_CRYPTO) &&             \
++     (defined(__aarch64__) || __has_builtin(__builtin_arm_crypto_vmullp64)))
++// Wraps vmull_p64
++FORCE_INLINE uint64x2_t _sse2neon_vmull_p64(uint64x1_t _a, uint64x1_t _b)
++{
++    poly64_t a = vget_lane_p64(vreinterpret_p64_u64(_a), 0);
++    poly64_t b = vget_lane_p64(vreinterpret_p64_u64(_b), 0);
++#if defined(_MSC_VER)
++    __n64 a1 = {a}, b1 = {b};
++    return vreinterpretq_u64_p128(vmull_p64(a1, b1));
++#else
++    return vreinterpretq_u64_p128(vmull_p64(a, b));
++#endif
++}
++#else  // ARMv7 polyfill
++// ARMv7/some A64 lacks vmull_p64, but it has vmull_p8.
++//
++// vmull_p8 calculates 8 8-bit->16-bit polynomial multiplies, but we need a
++// 64-bit->128-bit polynomial multiply.
++//
++// It needs some work and is somewhat slow, but it is still faster than all
++// known scalar methods.
++//
++// Algorithm adapted to C from
++// https://www.workofard.com/2017/07/ghash-for-low-end-cores/, which is adapted
++// from "Fast Software Polynomial Multiplication on ARM Processors Using the
++// NEON Engine" by Danilo Camara, Conrado Gouvea, Julio Lopez and Ricardo Dahab
++// (https://hal.inria.fr/hal-01506572)
++static uint64x2_t _sse2neon_vmull_p64(uint64x1_t _a, uint64x1_t _b)
++{
++    poly8x8_t a = vreinterpret_p8_u64(_a);
++    poly8x8_t b = vreinterpret_p8_u64(_b);
++
++    // Masks
++    uint8x16_t k48_32 = vcombine_u8(vcreate_u8(0x0000ffffffffffff),
++                                    vcreate_u8(0x00000000ffffffff));
++    uint8x16_t k16_00 = vcombine_u8(vcreate_u8(0x000000000000ffff),
++                                    vcreate_u8(0x0000000000000000));
++
++    // Do the multiplies, rotating with vext to get all combinations
++    uint8x16_t d = vreinterpretq_u8_p16(vmull_p8(a, b));  // D = A0 * B0
++    uint8x16_t e =
++        vreinterpretq_u8_p16(vmull_p8(a, vext_p8(b, b, 1)));  // E = A0 * B1
++    uint8x16_t f =
++        vreinterpretq_u8_p16(vmull_p8(vext_p8(a, a, 1), b));  // F = A1 * B0
++    uint8x16_t g =
++        vreinterpretq_u8_p16(vmull_p8(a, vext_p8(b, b, 2)));  // G = A0 * B2
++    uint8x16_t h =
++        vreinterpretq_u8_p16(vmull_p8(vext_p8(a, a, 2), b));  // H = A2 * B0
++    uint8x16_t i =
++        vreinterpretq_u8_p16(vmull_p8(a, vext_p8(b, b, 3)));  // I = A0 * B3
++    uint8x16_t j =
++        vreinterpretq_u8_p16(vmull_p8(vext_p8(a, a, 3), b));  // J = A3 * B0
++    uint8x16_t k =
++        vreinterpretq_u8_p16(vmull_p8(a, vext_p8(b, b, 4)));  // L = A0 * B4
++
++    // Add cross products
++    uint8x16_t l = veorq_u8(e, f);  // L = E + F
++    uint8x16_t m = veorq_u8(g, h);  // M = G + H
++    uint8x16_t n = veorq_u8(i, j);  // N = I + J
++
++    // Interleave. Using vzip1 and vzip2 prevents Clang from emitting TBL
++    // instructions.
++#if defined(__aarch64__)
++    uint8x16_t lm_p0 = vreinterpretq_u8_u64(
++        vzip1q_u64(vreinterpretq_u64_u8(l), vreinterpretq_u64_u8(m)));
++    uint8x16_t lm_p1 = vreinterpretq_u8_u64(
++        vzip2q_u64(vreinterpretq_u64_u8(l), vreinterpretq_u64_u8(m)));
++    uint8x16_t nk_p0 = vreinterpretq_u8_u64(
++        vzip1q_u64(vreinterpretq_u64_u8(n), vreinterpretq_u64_u8(k)));
++    uint8x16_t nk_p1 = vreinterpretq_u8_u64(
++        vzip2q_u64(vreinterpretq_u64_u8(n), vreinterpretq_u64_u8(k)));
++#else
++    uint8x16_t lm_p0 = vcombine_u8(vget_low_u8(l), vget_low_u8(m));
++    uint8x16_t lm_p1 = vcombine_u8(vget_high_u8(l), vget_high_u8(m));
++    uint8x16_t nk_p0 = vcombine_u8(vget_low_u8(n), vget_low_u8(k));
++    uint8x16_t nk_p1 = vcombine_u8(vget_high_u8(n), vget_high_u8(k));
++#endif
++    // t0 = (L) (P0 + P1) << 8
++    // t1 = (M) (P2 + P3) << 16
++    uint8x16_t t0t1_tmp = veorq_u8(lm_p0, lm_p1);
++    uint8x16_t t0t1_h = vandq_u8(lm_p1, k48_32);
++    uint8x16_t t0t1_l = veorq_u8(t0t1_tmp, t0t1_h);
++
++    // t2 = (N) (P4 + P5) << 24
++    // t3 = (K) (P6 + P7) << 32
++    uint8x16_t t2t3_tmp = veorq_u8(nk_p0, nk_p1);
++    uint8x16_t t2t3_h = vandq_u8(nk_p1, k16_00);
++    uint8x16_t t2t3_l = veorq_u8(t2t3_tmp, t2t3_h);
++
++    // De-interleave
++#if defined(__aarch64__)
++    uint8x16_t t0 = vreinterpretq_u8_u64(
++        vuzp1q_u64(vreinterpretq_u64_u8(t0t1_l), vreinterpretq_u64_u8(t0t1_h)));
++    uint8x16_t t1 = vreinterpretq_u8_u64(
++        vuzp2q_u64(vreinterpretq_u64_u8(t0t1_l), vreinterpretq_u64_u8(t0t1_h)));
++    uint8x16_t t2 = vreinterpretq_u8_u64(
++        vuzp1q_u64(vreinterpretq_u64_u8(t2t3_l), vreinterpretq_u64_u8(t2t3_h)));
++    uint8x16_t t3 = vreinterpretq_u8_u64(
++        vuzp2q_u64(vreinterpretq_u64_u8(t2t3_l), vreinterpretq_u64_u8(t2t3_h)));
++#else
++    uint8x16_t t1 = vcombine_u8(vget_high_u8(t0t1_l), vget_high_u8(t0t1_h));
++    uint8x16_t t0 = vcombine_u8(vget_low_u8(t0t1_l), vget_low_u8(t0t1_h));
++    uint8x16_t t3 = vcombine_u8(vget_high_u8(t2t3_l), vget_high_u8(t2t3_h));
++    uint8x16_t t2 = vcombine_u8(vget_low_u8(t2t3_l), vget_low_u8(t2t3_h));
++#endif
++    // Shift the cross products
++    uint8x16_t t0_shift = vextq_u8(t0, t0, 15);  // t0 << 8
++    uint8x16_t t1_shift = vextq_u8(t1, t1, 14);  // t1 << 16
++    uint8x16_t t2_shift = vextq_u8(t2, t2, 13);  // t2 << 24
++    uint8x16_t t3_shift = vextq_u8(t3, t3, 12);  // t3 << 32
++
++    // Accumulate the products
++    uint8x16_t cross1 = veorq_u8(t0_shift, t1_shift);
++    uint8x16_t cross2 = veorq_u8(t2_shift, t3_shift);
++    uint8x16_t mix = veorq_u8(d, cross1);
++    uint8x16_t r = veorq_u8(mix, cross2);
++    return vreinterpretq_u64_u8(r);
++}
++#endif  // ARMv7 polyfill
++
++// C equivalent:
++//   __m128i _mm_shuffle_epi32_default(__m128i a,
++//                                     __constrange(0, 255) int imm) {
++//       __m128i ret;
++//       ret[0] = a[imm        & 0x3];   ret[1] = a[(imm >> 2) & 0x3];
++//       ret[2] = a[(imm >> 4) & 0x03];  ret[3] = a[(imm >> 6) & 0x03];
++//       return ret;
++//   }
++#define _mm_shuffle_epi32_default(a, imm)                                   \
++    vreinterpretq_m128i_s32(vsetq_lane_s32(                                 \
++        vgetq_lane_s32(vreinterpretq_s32_m128i(a), ((imm) >> 6) & 0x3),     \
++        vsetq_lane_s32(                                                     \
++            vgetq_lane_s32(vreinterpretq_s32_m128i(a), ((imm) >> 4) & 0x3), \
++            vsetq_lane_s32(vgetq_lane_s32(vreinterpretq_s32_m128i(a),       \
++                                          ((imm) >> 2) & 0x3),              \
++                           vmovq_n_s32(vgetq_lane_s32(                      \
++                               vreinterpretq_s32_m128i(a), (imm) & (0x3))), \
++                           1),                                              \
++            2),                                                             \
++        3))
++
++// Takes the upper 64 bits of a and places it in the low end of the result
++// Takes the lower 64 bits of a and places it into the high end of the result.
++FORCE_INLINE __m128i _mm_shuffle_epi_1032(__m128i a)
++{
++    int32x2_t a32 = vget_high_s32(vreinterpretq_s32_m128i(a));
++    int32x2_t a10 = vget_low_s32(vreinterpretq_s32_m128i(a));
++    return vreinterpretq_m128i_s32(vcombine_s32(a32, a10));
++}
++
++// takes the lower two 32-bit values from a and swaps them and places in low end
++// of result takes the higher two 32 bit values from a and swaps them and places
++// in high end of result.
++FORCE_INLINE __m128i _mm_shuffle_epi_2301(__m128i a)
++{
++    int32x2_t a01 = vrev64_s32(vget_low_s32(vreinterpretq_s32_m128i(a)));
++    int32x2_t a23 = vrev64_s32(vget_high_s32(vreinterpretq_s32_m128i(a)));
++    return vreinterpretq_m128i_s32(vcombine_s32(a01, a23));
++}
++
++// rotates the least significant 32 bits into the most significant 32 bits, and
++// shifts the rest down
++FORCE_INLINE __m128i _mm_shuffle_epi_0321(__m128i a)
++{
++    return vreinterpretq_m128i_s32(
++        vextq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(a), 1));
++}
++
++// rotates the most significant 32 bits into the least significant 32 bits, and
++// shifts the rest up
++FORCE_INLINE __m128i _mm_shuffle_epi_2103(__m128i a)
++{
++    return vreinterpretq_m128i_s32(
++        vextq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(a), 3));
++}
++
++// gets the lower 64 bits of a, and places it in the upper 64 bits
++// gets the lower 64 bits of a and places it in the lower 64 bits
++FORCE_INLINE __m128i _mm_shuffle_epi_1010(__m128i a)
++{
++    int32x2_t a10 = vget_low_s32(vreinterpretq_s32_m128i(a));
++    return vreinterpretq_m128i_s32(vcombine_s32(a10, a10));
++}
++
++// gets the lower 64 bits of a, swaps the 0 and 1 elements, and places it in the
++// lower 64 bits gets the lower 64 bits of a, and places it in the upper 64 bits
++FORCE_INLINE __m128i _mm_shuffle_epi_1001(__m128i a)
++{
++    int32x2_t a01 = vrev64_s32(vget_low_s32(vreinterpretq_s32_m128i(a)));
++    int32x2_t a10 = vget_low_s32(vreinterpretq_s32_m128i(a));
++    return vreinterpretq_m128i_s32(vcombine_s32(a01, a10));
++}
++
++// gets the lower 64 bits of a, swaps the 0 and 1 elements and places it in the
++// upper 64 bits gets the lower 64 bits of a, swaps the 0 and 1 elements, and
++// places it in the lower 64 bits
++FORCE_INLINE __m128i _mm_shuffle_epi_0101(__m128i a)
++{
++    int32x2_t a01 = vrev64_s32(vget_low_s32(vreinterpretq_s32_m128i(a)));
++    return vreinterpretq_m128i_s32(vcombine_s32(a01, a01));
++}
++
++FORCE_INLINE __m128i _mm_shuffle_epi_2211(__m128i a)
++{
++    int32x2_t a11 = vdup_lane_s32(vget_low_s32(vreinterpretq_s32_m128i(a)), 1);
++    int32x2_t a22 = vdup_lane_s32(vget_high_s32(vreinterpretq_s32_m128i(a)), 0);
++    return vreinterpretq_m128i_s32(vcombine_s32(a11, a22));
++}
++
++FORCE_INLINE __m128i _mm_shuffle_epi_0122(__m128i a)
++{
++    int32x2_t a22 = vdup_lane_s32(vget_high_s32(vreinterpretq_s32_m128i(a)), 0);
++    int32x2_t a01 = vrev64_s32(vget_low_s32(vreinterpretq_s32_m128i(a)));
++    return vreinterpretq_m128i_s32(vcombine_s32(a22, a01));
++}
++
++FORCE_INLINE __m128i _mm_shuffle_epi_3332(__m128i a)
++{
++    int32x2_t a32 = vget_high_s32(vreinterpretq_s32_m128i(a));
++    int32x2_t a33 = vdup_lane_s32(vget_high_s32(vreinterpretq_s32_m128i(a)), 1);
++    return vreinterpretq_m128i_s32(vcombine_s32(a32, a33));
++}
++
++#if defined(__aarch64__) || defined(_M_ARM64)
++#define _mm_shuffle_epi32_splat(a, imm) \
++    vreinterpretq_m128i_s32(vdupq_laneq_s32(vreinterpretq_s32_m128i(a), (imm)))
++#else
++#define _mm_shuffle_epi32_splat(a, imm) \
++    vreinterpretq_m128i_s32(            \
++        vdupq_n_s32(vgetq_lane_s32(vreinterpretq_s32_m128i(a), (imm))))
++#endif
++
++// NEON does not support a general purpose permute intrinsic.
++// Shuffle single-precision (32-bit) floating-point elements in a using the
++// control in imm8, and store the results in dst.
++//
++// C equivalent:
++//   __m128 _mm_shuffle_ps_default(__m128 a, __m128 b,
++//                                 __constrange(0, 255) int imm) {
++//       __m128 ret;
++//       ret[0] = a[imm        & 0x3];   ret[1] = a[(imm >> 2) & 0x3];
++//       ret[2] = b[(imm >> 4) & 0x03];  ret[3] = b[(imm >> 6) & 0x03];
++//       return ret;
++//   }
++//
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_shuffle_ps
++#define _mm_shuffle_ps_default(a, b, imm)                                      \
++    vreinterpretq_m128_f32(vsetq_lane_f32(                                     \
++        vgetq_lane_f32(vreinterpretq_f32_m128(b), ((imm) >> 6) & 0x3),         \
++        vsetq_lane_f32(                                                        \
++            vgetq_lane_f32(vreinterpretq_f32_m128(b), ((imm) >> 4) & 0x3),     \
++            vsetq_lane_f32(                                                    \
++                vgetq_lane_f32(vreinterpretq_f32_m128(a), ((imm) >> 2) & 0x3), \
++                vmovq_n_f32(                                                   \
++                    vgetq_lane_f32(vreinterpretq_f32_m128(a), (imm) & (0x3))), \
++                1),                                                            \
++            2),                                                                \
++        3))
++
++// Shuffle 16-bit integers in the low 64 bits of a using the control in imm8.
++// Store the results in the low 64 bits of dst, with the high 64 bits being
++// copied from a to dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_shufflelo_epi16
++#define _mm_shufflelo_epi16_function(a, imm)                                  \
++    _sse2neon_define1(                                                        \
++        __m128i, a, int16x8_t ret = vreinterpretq_s16_m128i(_a);              \
++        int16x4_t lowBits = vget_low_s16(ret);                                \
++        ret = vsetq_lane_s16(vget_lane_s16(lowBits, (imm) & (0x3)), ret, 0);  \
++        ret = vsetq_lane_s16(vget_lane_s16(lowBits, ((imm) >> 2) & 0x3), ret, \
++                             1);                                              \
++        ret = vsetq_lane_s16(vget_lane_s16(lowBits, ((imm) >> 4) & 0x3), ret, \
++                             2);                                              \
++        ret = vsetq_lane_s16(vget_lane_s16(lowBits, ((imm) >> 6) & 0x3), ret, \
++                             3);                                              \
++        _sse2neon_return(vreinterpretq_m128i_s16(ret));)
++
++// Shuffle 16-bit integers in the high 64 bits of a using the control in imm8.
++// Store the results in the high 64 bits of dst, with the low 64 bits being
++// copied from a to dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_shufflehi_epi16
++#define _mm_shufflehi_epi16_function(a, imm)                                   \
++    _sse2neon_define1(                                                         \
++        __m128i, a, int16x8_t ret = vreinterpretq_s16_m128i(_a);               \
++        int16x4_t highBits = vget_high_s16(ret);                               \
++        ret = vsetq_lane_s16(vget_lane_s16(highBits, (imm) & (0x3)), ret, 4);  \
++        ret = vsetq_lane_s16(vget_lane_s16(highBits, ((imm) >> 2) & 0x3), ret, \
++                             5);                                               \
++        ret = vsetq_lane_s16(vget_lane_s16(highBits, ((imm) >> 4) & 0x3), ret, \
++                             6);                                               \
++        ret = vsetq_lane_s16(vget_lane_s16(highBits, ((imm) >> 6) & 0x3), ret, \
++                             7);                                               \
++        _sse2neon_return(vreinterpretq_m128i_s16(ret));)
++
++/* MMX */
++
++//_mm_empty is a no-op on arm
++FORCE_INLINE void _mm_empty(void) {}
++
++/* SSE */
++
++// Add packed single-precision (32-bit) floating-point elements in a and b, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_add_ps
++FORCE_INLINE __m128 _mm_add_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_f32(
++        vaddq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++}
++
++// Add the lower single-precision (32-bit) floating-point element in a and b,
++// store the result in the lower element of dst, and copy the upper 3 packed
++// elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_add_ss
++FORCE_INLINE __m128 _mm_add_ss(__m128 a, __m128 b)
++{
++    float32_t b0 = vgetq_lane_f32(vreinterpretq_f32_m128(b), 0);
++    float32x4_t value = vsetq_lane_f32(b0, vdupq_n_f32(0), 0);
++    // the upper values in the result must be the remnants of <a>.
++    return vreinterpretq_m128_f32(vaddq_f32(a, value));
++}
++
++// Compute the bitwise AND of packed single-precision (32-bit) floating-point
++// elements in a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_and_ps
++FORCE_INLINE __m128 _mm_and_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_s32(
++        vandq_s32(vreinterpretq_s32_m128(a), vreinterpretq_s32_m128(b)));
++}
++
++// Compute the bitwise NOT of packed single-precision (32-bit) floating-point
++// elements in a and then AND with b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_andnot_ps
++FORCE_INLINE __m128 _mm_andnot_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_s32(
++        vbicq_s32(vreinterpretq_s32_m128(b),
++                  vreinterpretq_s32_m128(a)));  // *NOTE* argument swap
++}
++
++// Average packed unsigned 16-bit integers in a and b, and store the results in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_avg_pu16
++FORCE_INLINE __m64 _mm_avg_pu16(__m64 a, __m64 b)
++{
++    return vreinterpret_m64_u16(
++        vrhadd_u16(vreinterpret_u16_m64(a), vreinterpret_u16_m64(b)));
++}
++
++// Average packed unsigned 8-bit integers in a and b, and store the results in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_avg_pu8
++FORCE_INLINE __m64 _mm_avg_pu8(__m64 a, __m64 b)
++{
++    return vreinterpret_m64_u8(
++        vrhadd_u8(vreinterpret_u8_m64(a), vreinterpret_u8_m64(b)));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b
++// for equality, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpeq_ps
++FORCE_INLINE __m128 _mm_cmpeq_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_u32(
++        vceqq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b for equality, store the result in the lower element of dst, and copy the
++// upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpeq_ss
++FORCE_INLINE __m128 _mm_cmpeq_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_cmpeq_ps(a, b));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b
++// for greater-than-or-equal, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpge_ps
++FORCE_INLINE __m128 _mm_cmpge_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_u32(
++        vcgeq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b for greater-than-or-equal, store the result in the lower element of dst,
++// and copy the upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpge_ss
++FORCE_INLINE __m128 _mm_cmpge_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_cmpge_ps(a, b));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b
++// for greater-than, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpgt_ps
++FORCE_INLINE __m128 _mm_cmpgt_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_u32(
++        vcgtq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b for greater-than, store the result in the lower element of dst, and copy
++// the upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpgt_ss
++FORCE_INLINE __m128 _mm_cmpgt_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_cmpgt_ps(a, b));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b
++// for less-than-or-equal, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmple_ps
++FORCE_INLINE __m128 _mm_cmple_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_u32(
++        vcleq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b for less-than-or-equal, store the result in the lower element of dst, and
++// copy the upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmple_ss
++FORCE_INLINE __m128 _mm_cmple_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_cmple_ps(a, b));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b
++// for less-than, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmplt_ps
++FORCE_INLINE __m128 _mm_cmplt_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_u32(
++        vcltq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b for less-than, store the result in the lower element of dst, and copy the
++// upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmplt_ss
++FORCE_INLINE __m128 _mm_cmplt_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_cmplt_ps(a, b));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b
++// for not-equal, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpneq_ps
++FORCE_INLINE __m128 _mm_cmpneq_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_u32(vmvnq_u32(
++        vceqq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b))));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b for not-equal, store the result in the lower element of dst, and copy the
++// upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpneq_ss
++FORCE_INLINE __m128 _mm_cmpneq_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_cmpneq_ps(a, b));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b
++// for not-greater-than-or-equal, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpnge_ps
++FORCE_INLINE __m128 _mm_cmpnge_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_u32(vmvnq_u32(
++        vcgeq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b))));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b for not-greater-than-or-equal, store the result in the lower element of
++// dst, and copy the upper 3 packed elements from a to the upper elements of
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpnge_ss
++FORCE_INLINE __m128 _mm_cmpnge_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_cmpnge_ps(a, b));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b
++// for not-greater-than, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpngt_ps
++FORCE_INLINE __m128 _mm_cmpngt_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_u32(vmvnq_u32(
++        vcgtq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b))));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b for not-greater-than, store the result in the lower element of dst, and
++// copy the upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpngt_ss
++FORCE_INLINE __m128 _mm_cmpngt_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_cmpngt_ps(a, b));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b
++// for not-less-than-or-equal, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpnle_ps
++FORCE_INLINE __m128 _mm_cmpnle_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_u32(vmvnq_u32(
++        vcleq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b))));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b for not-less-than-or-equal, store the result in the lower element of dst,
++// and copy the upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpnle_ss
++FORCE_INLINE __m128 _mm_cmpnle_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_cmpnle_ps(a, b));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b
++// for not-less-than, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpnlt_ps
++FORCE_INLINE __m128 _mm_cmpnlt_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_u32(vmvnq_u32(
++        vcltq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b))));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b for not-less-than, store the result in the lower element of dst, and copy
++// the upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpnlt_ss
++FORCE_INLINE __m128 _mm_cmpnlt_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_cmpnlt_ps(a, b));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b
++// to see if neither is NaN, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpord_ps
++//
++// See also:
++// http://stackoverflow.com/questions/8627331/what-does-ordered-unordered-comparison-mean
++// http://stackoverflow.com/questions/29349621/neon-isnanval-intrinsics
++FORCE_INLINE __m128 _mm_cmpord_ps(__m128 a, __m128 b)
++{
++    // Note: NEON does not have ordered compare builtin
++    // Need to compare a eq a and b eq b to check for NaN
++    // Do AND of results to get final
++    uint32x4_t ceqaa =
++        vceqq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(a));
++    uint32x4_t ceqbb =
++        vceqq_f32(vreinterpretq_f32_m128(b), vreinterpretq_f32_m128(b));
++    return vreinterpretq_m128_u32(vandq_u32(ceqaa, ceqbb));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b to see if neither is NaN, store the result in the lower element of dst, and
++// copy the upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpord_ss
++FORCE_INLINE __m128 _mm_cmpord_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_cmpord_ps(a, b));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b
++// to see if either is NaN, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpunord_ps
++FORCE_INLINE __m128 _mm_cmpunord_ps(__m128 a, __m128 b)
++{
++    uint32x4_t f32a =
++        vceqq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(a));
++    uint32x4_t f32b =
++        vceqq_f32(vreinterpretq_f32_m128(b), vreinterpretq_f32_m128(b));
++    return vreinterpretq_m128_u32(vmvnq_u32(vandq_u32(f32a, f32b)));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b to see if either is NaN, store the result in the lower element of dst, and
++// copy the upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpunord_ss
++FORCE_INLINE __m128 _mm_cmpunord_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_cmpunord_ps(a, b));
++}
++
++// Compare the lower single-precision (32-bit) floating-point element in a and b
++// for equality, and return the boolean result (0 or 1).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_comieq_ss
++FORCE_INLINE int _mm_comieq_ss(__m128 a, __m128 b)
++{
++    uint32x4_t a_eq_b =
++        vceqq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b));
++    return vgetq_lane_u32(a_eq_b, 0) & 0x1;
++}
++
++// Compare the lower single-precision (32-bit) floating-point element in a and b
++// for greater-than-or-equal, and return the boolean result (0 or 1).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_comige_ss
++FORCE_INLINE int _mm_comige_ss(__m128 a, __m128 b)
++{
++    uint32x4_t a_ge_b =
++        vcgeq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b));
++    return vgetq_lane_u32(a_ge_b, 0) & 0x1;
++}
++
++// Compare the lower single-precision (32-bit) floating-point element in a and b
++// for greater-than, and return the boolean result (0 or 1).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_comigt_ss
++FORCE_INLINE int _mm_comigt_ss(__m128 a, __m128 b)
++{
++    uint32x4_t a_gt_b =
++        vcgtq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b));
++    return vgetq_lane_u32(a_gt_b, 0) & 0x1;
++}
++
++// Compare the lower single-precision (32-bit) floating-point element in a and b
++// for less-than-or-equal, and return the boolean result (0 or 1).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_comile_ss
++FORCE_INLINE int _mm_comile_ss(__m128 a, __m128 b)
++{
++    uint32x4_t a_le_b =
++        vcleq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b));
++    return vgetq_lane_u32(a_le_b, 0) & 0x1;
++}
++
++// Compare the lower single-precision (32-bit) floating-point element in a and b
++// for less-than, and return the boolean result (0 or 1).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_comilt_ss
++FORCE_INLINE int _mm_comilt_ss(__m128 a, __m128 b)
++{
++    uint32x4_t a_lt_b =
++        vcltq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b));
++    return vgetq_lane_u32(a_lt_b, 0) & 0x1;
++}
++
++// Compare the lower single-precision (32-bit) floating-point element in a and b
++// for not-equal, and return the boolean result (0 or 1).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_comineq_ss
++FORCE_INLINE int _mm_comineq_ss(__m128 a, __m128 b)
++{
++    return !_mm_comieq_ss(a, b);
++}
++
++// Convert packed signed 32-bit integers in b to packed single-precision
++// (32-bit) floating-point elements, store the results in the lower 2 elements
++// of dst, and copy the upper 2 packed elements from a to the upper elements of
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvt_pi2ps
++FORCE_INLINE __m128 _mm_cvt_pi2ps(__m128 a, __m64 b)
++{
++    return vreinterpretq_m128_f32(
++        vcombine_f32(vcvt_f32_s32(vreinterpret_s32_m64(b)),
++                     vget_high_f32(vreinterpretq_f32_m128(a))));
++}
++
++// Convert packed single-precision (32-bit) floating-point elements in a to
++// packed 32-bit integers, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvt_ps2pi
++FORCE_INLINE __m64 _mm_cvt_ps2pi(__m128 a)
++{
++#if (defined(__aarch64__) || defined(_M_ARM64)) || \
++    defined(__ARM_FEATURE_DIRECTED_ROUNDING)
++    return vreinterpret_m64_s32(
++        vget_low_s32(vcvtnq_s32_f32(vrndiq_f32(vreinterpretq_f32_m128(a)))));
++#else
++    return vreinterpret_m64_s32(vcvt_s32_f32(vget_low_f32(
++        vreinterpretq_f32_m128(_mm_round_ps(a, _MM_FROUND_CUR_DIRECTION)))));
++#endif
++}
++
++// Convert the signed 32-bit integer b to a single-precision (32-bit)
++// floating-point element, store the result in the lower element of dst, and
++// copy the upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvt_si2ss
++FORCE_INLINE __m128 _mm_cvt_si2ss(__m128 a, int b)
++{
++    return vreinterpretq_m128_f32(
++        vsetq_lane_f32((float) b, vreinterpretq_f32_m128(a), 0));
++}
++
++// Convert the lower single-precision (32-bit) floating-point element in a to a
++// 32-bit integer, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvt_ss2si
++FORCE_INLINE int _mm_cvt_ss2si(__m128 a)
++{
++#if (defined(__aarch64__) || defined(_M_ARM64)) || \
++    defined(__ARM_FEATURE_DIRECTED_ROUNDING)
++    return vgetq_lane_s32(vcvtnq_s32_f32(vrndiq_f32(vreinterpretq_f32_m128(a))),
++                          0);
++#else
++    float32_t data = vgetq_lane_f32(
++        vreinterpretq_f32_m128(_mm_round_ps(a, _MM_FROUND_CUR_DIRECTION)), 0);
++    return (int32_t) data;
++#endif
++}
++
++// Convert packed 16-bit integers in a to packed single-precision (32-bit)
++// floating-point elements, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtpi16_ps
++FORCE_INLINE __m128 _mm_cvtpi16_ps(__m64 a)
++{
++    return vreinterpretq_m128_f32(
++        vcvtq_f32_s32(vmovl_s16(vreinterpret_s16_m64(a))));
++}
++
++// Convert packed 32-bit integers in b to packed single-precision (32-bit)
++// floating-point elements, store the results in the lower 2 elements of dst,
++// and copy the upper 2 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtpi32_ps
++FORCE_INLINE __m128 _mm_cvtpi32_ps(__m128 a, __m64 b)
++{
++    return vreinterpretq_m128_f32(
++        vcombine_f32(vcvt_f32_s32(vreinterpret_s32_m64(b)),
++                     vget_high_f32(vreinterpretq_f32_m128(a))));
++}
++
++// Convert packed signed 32-bit integers in a to packed single-precision
++// (32-bit) floating-point elements, store the results in the lower 2 elements
++// of dst, then convert the packed signed 32-bit integers in b to
++// single-precision (32-bit) floating-point element, and store the results in
++// the upper 2 elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtpi32x2_ps
++FORCE_INLINE __m128 _mm_cvtpi32x2_ps(__m64 a, __m64 b)
++{
++    return vreinterpretq_m128_f32(vcvtq_f32_s32(
++        vcombine_s32(vreinterpret_s32_m64(a), vreinterpret_s32_m64(b))));
++}
++
++// Convert the lower packed 8-bit integers in a to packed single-precision
++// (32-bit) floating-point elements, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtpi8_ps
++FORCE_INLINE __m128 _mm_cvtpi8_ps(__m64 a)
++{
++    return vreinterpretq_m128_f32(vcvtq_f32_s32(
++        vmovl_s16(vget_low_s16(vmovl_s8(vreinterpret_s8_m64(a))))));
++}
++
++// Convert packed single-precision (32-bit) floating-point elements in a to
++// packed 16-bit integers, and store the results in dst. Note: this intrinsic
++// will generate 0x7FFF, rather than 0x8000, for input values between 0x7FFF and
++// 0x7FFFFFFF.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtps_pi16
++FORCE_INLINE __m64 _mm_cvtps_pi16(__m128 a)
++{
++    return vreinterpret_m64_s16(
++        vqmovn_s32(vreinterpretq_s32_m128i(_mm_cvtps_epi32(a))));
++}
++
++// Convert packed single-precision (32-bit) floating-point elements in a to
++// packed 32-bit integers, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtps_pi32
++#define _mm_cvtps_pi32(a) _mm_cvt_ps2pi(a)
++
++// Convert packed single-precision (32-bit) floating-point elements in a to
++// packed 8-bit integers, and store the results in lower 4 elements of dst.
++// Note: this intrinsic will generate 0x7F, rather than 0x80, for input values
++// between 0x7F and 0x7FFFFFFF.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtps_pi8
++FORCE_INLINE __m64 _mm_cvtps_pi8(__m128 a)
++{
++    return vreinterpret_m64_s8(vqmovn_s16(
++        vcombine_s16(vreinterpret_s16_m64(_mm_cvtps_pi16(a)), vdup_n_s16(0))));
++}
++
++// Convert packed unsigned 16-bit integers in a to packed single-precision
++// (32-bit) floating-point elements, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtpu16_ps
++FORCE_INLINE __m128 _mm_cvtpu16_ps(__m64 a)
++{
++    return vreinterpretq_m128_f32(
++        vcvtq_f32_u32(vmovl_u16(vreinterpret_u16_m64(a))));
++}
++
++// Convert the lower packed unsigned 8-bit integers in a to packed
++// single-precision (32-bit) floating-point elements, and store the results in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtpu8_ps
++FORCE_INLINE __m128 _mm_cvtpu8_ps(__m64 a)
++{
++    return vreinterpretq_m128_f32(vcvtq_f32_u32(
++        vmovl_u16(vget_low_u16(vmovl_u8(vreinterpret_u8_m64(a))))));
++}
++
++// Convert the signed 32-bit integer b to a single-precision (32-bit)
++// floating-point element, store the result in the lower element of dst, and
++// copy the upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsi32_ss
++#define _mm_cvtsi32_ss(a, b) _mm_cvt_si2ss(a, b)
++
++// Convert the signed 64-bit integer b to a single-precision (32-bit)
++// floating-point element, store the result in the lower element of dst, and
++// copy the upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsi64_ss
++FORCE_INLINE __m128 _mm_cvtsi64_ss(__m128 a, int64_t b)
++{
++    return vreinterpretq_m128_f32(
++        vsetq_lane_f32((float) b, vreinterpretq_f32_m128(a), 0));
++}
++
++// Copy the lower single-precision (32-bit) floating-point element of a to dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtss_f32
++FORCE_INLINE float _mm_cvtss_f32(__m128 a)
++{
++    return vgetq_lane_f32(vreinterpretq_f32_m128(a), 0);
++}
++
++// Convert the lower single-precision (32-bit) floating-point element in a to a
++// 32-bit integer, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtss_si32
++#define _mm_cvtss_si32(a) _mm_cvt_ss2si(a)
++
++// Convert the lower single-precision (32-bit) floating-point element in a to a
++// 64-bit integer, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtss_si64
++FORCE_INLINE int64_t _mm_cvtss_si64(__m128 a)
++{
++#if (defined(__aarch64__) || defined(_M_ARM64)) || \
++    defined(__ARM_FEATURE_DIRECTED_ROUNDING)
++    return (int64_t) vgetq_lane_f32(vrndiq_f32(vreinterpretq_f32_m128(a)), 0);
++#else
++    float32_t data = vgetq_lane_f32(
++        vreinterpretq_f32_m128(_mm_round_ps(a, _MM_FROUND_CUR_DIRECTION)), 0);
++    return (int64_t) data;
++#endif
++}
++
++// Convert packed single-precision (32-bit) floating-point elements in a to
++// packed 32-bit integers with truncation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtt_ps2pi
++FORCE_INLINE __m64 _mm_cvtt_ps2pi(__m128 a)
++{
++    return vreinterpret_m64_s32(
++        vget_low_s32(vcvtq_s32_f32(vreinterpretq_f32_m128(a))));
++}
++
++// Convert the lower single-precision (32-bit) floating-point element in a to a
++// 32-bit integer with truncation, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtt_ss2si
++FORCE_INLINE int _mm_cvtt_ss2si(__m128 a)
++{
++    return vgetq_lane_s32(vcvtq_s32_f32(vreinterpretq_f32_m128(a)), 0);
++}
++
++// Convert packed single-precision (32-bit) floating-point elements in a to
++// packed 32-bit integers with truncation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvttps_pi32
++#define _mm_cvttps_pi32(a) _mm_cvtt_ps2pi(a)
++
++// Convert the lower single-precision (32-bit) floating-point element in a to a
++// 32-bit integer with truncation, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvttss_si32
++#define _mm_cvttss_si32(a) _mm_cvtt_ss2si(a)
++
++// Convert the lower single-precision (32-bit) floating-point element in a to a
++// 64-bit integer with truncation, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvttss_si64
++FORCE_INLINE int64_t _mm_cvttss_si64(__m128 a)
++{
++    return (int64_t) vgetq_lane_f32(vreinterpretq_f32_m128(a), 0);
++}
++
++// Divide packed single-precision (32-bit) floating-point elements in a by
++// packed elements in b, and store the results in dst.
++// Due to ARMv7-A NEON's lack of a precise division intrinsic, we implement
++// division by multiplying a by b's reciprocal before using the Newton-Raphson
++// method to approximate the results.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_div_ps
++FORCE_INLINE __m128 _mm_div_ps(__m128 a, __m128 b)
++{
++#if (defined(__aarch64__) || defined(_M_ARM64)) && !SSE2NEON_PRECISE_DIV
++    return vreinterpretq_m128_f32(
++        vdivq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++#else
++    float32x4_t recip = vrecpeq_f32(vreinterpretq_f32_m128(b));
++    recip = vmulq_f32(recip, vrecpsq_f32(recip, vreinterpretq_f32_m128(b)));
++    // Additional Netwon-Raphson iteration for accuracy
++    recip = vmulq_f32(recip, vrecpsq_f32(recip, vreinterpretq_f32_m128(b)));
++    return vreinterpretq_m128_f32(vmulq_f32(vreinterpretq_f32_m128(a), recip));
++#endif
++}
++
++// Divide the lower single-precision (32-bit) floating-point element in a by the
++// lower single-precision (32-bit) floating-point element in b, store the result
++// in the lower element of dst, and copy the upper 3 packed elements from a to
++// the upper elements of dst.
++// Warning: ARMv7-A does not produce the same result compared to Intel and not
++// IEEE-compliant.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_div_ss
++FORCE_INLINE __m128 _mm_div_ss(__m128 a, __m128 b)
++{
++    float32_t value =
++        vgetq_lane_f32(vreinterpretq_f32_m128(_mm_div_ps(a, b)), 0);
++    return vreinterpretq_m128_f32(
++        vsetq_lane_f32(value, vreinterpretq_f32_m128(a), 0));
++}
++
++// Extract a 16-bit integer from a, selected with imm8, and store the result in
++// the lower element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_extract_pi16
++#define _mm_extract_pi16(a, imm) \
++    (int32_t) vget_lane_u16(vreinterpret_u16_m64(a), (imm))
++
++// Free aligned memory that was allocated with _mm_malloc.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_free
++#if !defined(SSE2NEON_ALLOC_DEFINED)
++FORCE_INLINE void _mm_free(void *addr)
++{
++    free(addr);
++}
++#endif
++
++FORCE_INLINE uint64_t _sse2neon_get_fpcr(void)
++{
++    uint64_t value;
++#if defined(_MSC_VER)
++    value = _ReadStatusReg(ARM64_FPCR);
++#else
++    __asm__ __volatile__("mrs %0, FPCR" : "=r"(value)); /* read */
++#endif
++    return value;
++}
++
++FORCE_INLINE void _sse2neon_set_fpcr(uint64_t value)
++{
++#if defined(_MSC_VER)
++    _WriteStatusReg(ARM64_FPCR, value);
++#else
++    __asm__ __volatile__("msr FPCR, %0" ::"r"(value));  /* write */
++#endif
++}
++
++// Macro: Get the flush zero bits from the MXCSR control and status register.
++// The flush zero may contain any of the following flags: _MM_FLUSH_ZERO_ON or
++// _MM_FLUSH_ZERO_OFF
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_MM_GET_FLUSH_ZERO_MODE
++FORCE_INLINE unsigned int _sse2neon_mm_get_flush_zero_mode(void)
++{
++    union {
++        fpcr_bitfield field;
++#if defined(__aarch64__) || defined(_M_ARM64)
++        uint64_t value;
++#else
++        uint32_t value;
++#endif
++    } r;
++
++#if defined(__aarch64__) || defined(_M_ARM64)
++    r.value = _sse2neon_get_fpcr();
++#else
++    __asm__ __volatile__("vmrs %0, FPSCR" : "=r"(r.value)); /* read */
++#endif
++
++    return r.field.bit24 ? _MM_FLUSH_ZERO_ON : _MM_FLUSH_ZERO_OFF;
++}
++
++// Macro: Get the rounding mode bits from the MXCSR control and status register.
++// The rounding mode may contain any of the following flags: _MM_ROUND_NEAREST,
++// _MM_ROUND_DOWN, _MM_ROUND_UP, _MM_ROUND_TOWARD_ZERO
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_MM_GET_ROUNDING_MODE
++FORCE_INLINE unsigned int _MM_GET_ROUNDING_MODE(void)
++{
++    union {
++        fpcr_bitfield field;
++#if defined(__aarch64__) || defined(_M_ARM64)
++        uint64_t value;
++#else
++        uint32_t value;
++#endif
++    } r;
++
++#if defined(__aarch64__) || defined(_M_ARM64)
++    r.value = _sse2neon_get_fpcr();
++#else
++    __asm__ __volatile__("vmrs %0, FPSCR" : "=r"(r.value)); /* read */
++#endif
++
++    if (r.field.bit22) {
++        return r.field.bit23 ? _MM_ROUND_TOWARD_ZERO : _MM_ROUND_UP;
++    } else {
++        return r.field.bit23 ? _MM_ROUND_DOWN : _MM_ROUND_NEAREST;
++    }
++}
++
++// Copy a to dst, and insert the 16-bit integer i into dst at the location
++// specified by imm8.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_insert_pi16
++#define _mm_insert_pi16(a, b, imm) \
++    vreinterpret_m64_s16(vset_lane_s16((b), vreinterpret_s16_m64(a), (imm)))
++
++// Load 128-bits (composed of 4 packed single-precision (32-bit) floating-point
++// elements) from memory into dst. mem_addr must be aligned on a 16-byte
++// boundary or a general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_load_ps
++FORCE_INLINE __m128 _mm_load_ps(const float *p)
++{
++    return vreinterpretq_m128_f32(vld1q_f32(p));
++}
++
++// Load a single-precision (32-bit) floating-point element from memory into all
++// elements of dst.
++//
++//   dst[31:0] := MEM[mem_addr+31:mem_addr]
++//   dst[63:32] := MEM[mem_addr+31:mem_addr]
++//   dst[95:64] := MEM[mem_addr+31:mem_addr]
++//   dst[127:96] := MEM[mem_addr+31:mem_addr]
++//
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_load_ps1
++#define _mm_load_ps1 _mm_load1_ps
++
++// Load a single-precision (32-bit) floating-point element from memory into the
++// lower of dst, and zero the upper 3 elements. mem_addr does not need to be
++// aligned on any particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_load_ss
++FORCE_INLINE __m128 _mm_load_ss(const float *p)
++{
++    return vreinterpretq_m128_f32(vsetq_lane_f32(*p, vdupq_n_f32(0), 0));
++}
++
++// Load a single-precision (32-bit) floating-point element from memory into all
++// elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_load1_ps
++FORCE_INLINE __m128 _mm_load1_ps(const float *p)
++{
++    return vreinterpretq_m128_f32(vld1q_dup_f32(p));
++}
++
++// Load 2 single-precision (32-bit) floating-point elements from memory into the
++// upper 2 elements of dst, and copy the lower 2 elements from a to dst.
++// mem_addr does not need to be aligned on any particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadh_pi
++FORCE_INLINE __m128 _mm_loadh_pi(__m128 a, __m64 const *p)
++{
++    return vreinterpretq_m128_f32(
++        vcombine_f32(vget_low_f32(a), vld1_f32((const float32_t *) p)));
++}
++
++// Load 2 single-precision (32-bit) floating-point elements from memory into the
++// lower 2 elements of dst, and copy the upper 2 elements from a to dst.
++// mem_addr does not need to be aligned on any particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadl_pi
++FORCE_INLINE __m128 _mm_loadl_pi(__m128 a, __m64 const *p)
++{
++    return vreinterpretq_m128_f32(
++        vcombine_f32(vld1_f32((const float32_t *) p), vget_high_f32(a)));
++}
++
++// Load 4 single-precision (32-bit) floating-point elements from memory into dst
++// in reverse order. mem_addr must be aligned on a 16-byte boundary or a
++// general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadr_ps
++FORCE_INLINE __m128 _mm_loadr_ps(const float *p)
++{
++    float32x4_t v = vrev64q_f32(vld1q_f32(p));
++    return vreinterpretq_m128_f32(vextq_f32(v, v, 2));
++}
++
++// Load 128-bits (composed of 4 packed single-precision (32-bit) floating-point
++// elements) from memory into dst. mem_addr does not need to be aligned on any
++// particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadu_ps
++FORCE_INLINE __m128 _mm_loadu_ps(const float *p)
++{
++    // for neon, alignment doesn't matter, so _mm_load_ps and _mm_loadu_ps are
++    // equivalent for neon
++    return vreinterpretq_m128_f32(vld1q_f32(p));
++}
++
++// Load unaligned 16-bit integer from memory into the first element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadu_si16
++FORCE_INLINE __m128i _mm_loadu_si16(const void *p)
++{
++    return vreinterpretq_m128i_s16(
++        vsetq_lane_s16(*(const int16_t *) p, vdupq_n_s16(0), 0));
++}
++
++// Load unaligned 64-bit integer from memory into the first element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadu_si64
++FORCE_INLINE __m128i _mm_loadu_si64(const void *p)
++{
++    return vreinterpretq_m128i_s64(
++        vcombine_s64(vld1_s64((const int64_t *) p), vdup_n_s64(0)));
++}
++
++// Allocate size bytes of memory, aligned to the alignment specified in align,
++// and return a pointer to the allocated memory. _mm_free should be used to free
++// memory that is allocated with _mm_malloc.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_malloc
++#if !defined(SSE2NEON_ALLOC_DEFINED)
++FORCE_INLINE void *_mm_malloc(size_t size, size_t align)
++{
++    void *ptr;
++    if (align == 1)
++        return malloc(size);
++    if (align == 2 || (sizeof(void *) == 8 && align == 4))
++        align = sizeof(void *);
++    if (!posix_memalign(&ptr, align, size))
++        return ptr;
++    return NULL;
++}
++#endif
++
++// Conditionally store 8-bit integer elements from a into memory using mask
++// (elements are not stored when the highest bit is not set in the corresponding
++// element) and a non-temporal memory hint.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_maskmove_si64
++FORCE_INLINE void _mm_maskmove_si64(__m64 a, __m64 mask, char *mem_addr)
++{
++    int8x8_t shr_mask = vshr_n_s8(vreinterpret_s8_m64(mask), 7);
++    __m128 b = _mm_load_ps((const float *) mem_addr);
++    int8x8_t masked =
++        vbsl_s8(vreinterpret_u8_s8(shr_mask), vreinterpret_s8_m64(a),
++                vreinterpret_s8_u64(vget_low_u64(vreinterpretq_u64_m128(b))));
++    vst1_s8((int8_t *) mem_addr, masked);
++}
++
++// Conditionally store 8-bit integer elements from a into memory using mask
++// (elements are not stored when the highest bit is not set in the corresponding
++// element) and a non-temporal memory hint.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_m_maskmovq
++#define _m_maskmovq(a, mask, mem_addr) _mm_maskmove_si64(a, mask, mem_addr)
++
++// Compare packed signed 16-bit integers in a and b, and store packed maximum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_pi16
++FORCE_INLINE __m64 _mm_max_pi16(__m64 a, __m64 b)
++{
++    return vreinterpret_m64_s16(
++        vmax_s16(vreinterpret_s16_m64(a), vreinterpret_s16_m64(b)));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b,
++// and store packed maximum values in dst. dst does not follow the IEEE Standard
++// for Floating-Point Arithmetic (IEEE 754) maximum value when inputs are NaN or
++// signed-zero values.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_ps
++FORCE_INLINE __m128 _mm_max_ps(__m128 a, __m128 b)
++{
++#if SSE2NEON_PRECISE_MINMAX
++    float32x4_t _a = vreinterpretq_f32_m128(a);
++    float32x4_t _b = vreinterpretq_f32_m128(b);
++    return vreinterpretq_m128_f32(vbslq_f32(vcgtq_f32(_a, _b), _a, _b));
++#else
++    return vreinterpretq_m128_f32(
++        vmaxq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++#endif
++}
++
++// Compare packed unsigned 8-bit integers in a and b, and store packed maximum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_pu8
++FORCE_INLINE __m64 _mm_max_pu8(__m64 a, __m64 b)
++{
++    return vreinterpret_m64_u8(
++        vmax_u8(vreinterpret_u8_m64(a), vreinterpret_u8_m64(b)));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b, store the maximum value in the lower element of dst, and copy the upper 3
++// packed elements from a to the upper element of dst. dst does not follow the
++// IEEE Standard for Floating-Point Arithmetic (IEEE 754) maximum value when
++// inputs are NaN or signed-zero values.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_ss
++FORCE_INLINE __m128 _mm_max_ss(__m128 a, __m128 b)
++{
++    float32_t value = vgetq_lane_f32(_mm_max_ps(a, b), 0);
++    return vreinterpretq_m128_f32(
++        vsetq_lane_f32(value, vreinterpretq_f32_m128(a), 0));
++}
++
++// Compare packed signed 16-bit integers in a and b, and store packed minimum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_min_pi16
++FORCE_INLINE __m64 _mm_min_pi16(__m64 a, __m64 b)
++{
++    return vreinterpret_m64_s16(
++        vmin_s16(vreinterpret_s16_m64(a), vreinterpret_s16_m64(b)));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b,
++// and store packed minimum values in dst. dst does not follow the IEEE Standard
++// for Floating-Point Arithmetic (IEEE 754) minimum value when inputs are NaN or
++// signed-zero values.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_min_ps
++FORCE_INLINE __m128 _mm_min_ps(__m128 a, __m128 b)
++{
++#if SSE2NEON_PRECISE_MINMAX
++    float32x4_t _a = vreinterpretq_f32_m128(a);
++    float32x4_t _b = vreinterpretq_f32_m128(b);
++    return vreinterpretq_m128_f32(vbslq_f32(vcltq_f32(_a, _b), _a, _b));
++#else
++    return vreinterpretq_m128_f32(
++        vminq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++#endif
++}
++
++// Compare packed unsigned 8-bit integers in a and b, and store packed minimum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_min_pu8
++FORCE_INLINE __m64 _mm_min_pu8(__m64 a, __m64 b)
++{
++    return vreinterpret_m64_u8(
++        vmin_u8(vreinterpret_u8_m64(a), vreinterpret_u8_m64(b)));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b, store the minimum value in the lower element of dst, and copy the upper 3
++// packed elements from a to the upper element of dst. dst does not follow the
++// IEEE Standard for Floating-Point Arithmetic (IEEE 754) minimum value when
++// inputs are NaN or signed-zero values.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_min_ss
++FORCE_INLINE __m128 _mm_min_ss(__m128 a, __m128 b)
++{
++    float32_t value = vgetq_lane_f32(_mm_min_ps(a, b), 0);
++    return vreinterpretq_m128_f32(
++        vsetq_lane_f32(value, vreinterpretq_f32_m128(a), 0));
++}
++
++// Move the lower single-precision (32-bit) floating-point element from b to the
++// lower element of dst, and copy the upper 3 packed elements from a to the
++// upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_move_ss
++FORCE_INLINE __m128 _mm_move_ss(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_f32(
++        vsetq_lane_f32(vgetq_lane_f32(vreinterpretq_f32_m128(b), 0),
++                       vreinterpretq_f32_m128(a), 0));
++}
++
++// Move the upper 2 single-precision (32-bit) floating-point elements from b to
++// the lower 2 elements of dst, and copy the upper 2 elements from a to the
++// upper 2 elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_movehl_ps
++FORCE_INLINE __m128 _mm_movehl_ps(__m128 a, __m128 b)
++{
++#if defined(aarch64__)
++    return vreinterpretq_m128_u64(
++        vzip2q_u64(vreinterpretq_u64_m128(b), vreinterpretq_u64_m128(a)));
++#else
++    float32x2_t a32 = vget_high_f32(vreinterpretq_f32_m128(a));
++    float32x2_t b32 = vget_high_f32(vreinterpretq_f32_m128(b));
++    return vreinterpretq_m128_f32(vcombine_f32(b32, a32));
++#endif
++}
++
++// Move the lower 2 single-precision (32-bit) floating-point elements from b to
++// the upper 2 elements of dst, and copy the lower 2 elements from a to the
++// lower 2 elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_movelh_ps
++FORCE_INLINE __m128 _mm_movelh_ps(__m128 __A, __m128 __B)
++{
++    float32x2_t a10 = vget_low_f32(vreinterpretq_f32_m128(__A));
++    float32x2_t b10 = vget_low_f32(vreinterpretq_f32_m128(__B));
++    return vreinterpretq_m128_f32(vcombine_f32(a10, b10));
++}
++
++// Create mask from the most significant bit of each 8-bit element in a, and
++// store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_movemask_pi8
++FORCE_INLINE int _mm_movemask_pi8(__m64 a)
++{
++    uint8x8_t input = vreinterpret_u8_m64(a);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    static const int8_t shift[8] = {0, 1, 2, 3, 4, 5, 6, 7};
++    uint8x8_t tmp = vshr_n_u8(input, 7);
++    return vaddv_u8(vshl_u8(tmp, vld1_s8(shift)));
++#else
++    // Refer the implementation of `_mm_movemask_epi8`
++    uint16x4_t high_bits = vreinterpret_u16_u8(vshr_n_u8(input, 7));
++    uint32x2_t paired16 =
++        vreinterpret_u32_u16(vsra_n_u16(high_bits, high_bits, 7));
++    uint8x8_t paired32 =
++        vreinterpret_u8_u32(vsra_n_u32(paired16, paired16, 14));
++    return vget_lane_u8(paired32, 0) | ((int) vget_lane_u8(paired32, 4) << 4);
++#endif
++}
++
++// Set each bit of mask dst based on the most significant bit of the
++// corresponding packed single-precision (32-bit) floating-point element in a.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_movemask_ps
++FORCE_INLINE int _mm_movemask_ps(__m128 a)
++{
++    uint32x4_t input = vreinterpretq_u32_m128(a);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    static const int32_t shift[4] = {0, 1, 2, 3};
++    uint32x4_t tmp = vshrq_n_u32(input, 31);
++    return vaddvq_u32(vshlq_u32(tmp, vld1q_s32(shift)));
++#else
++    // Uses the exact same method as _mm_movemask_epi8, see that for details.
++    // Shift out everything but the sign bits with a 32-bit unsigned shift
++    // right.
++    uint64x2_t high_bits = vreinterpretq_u64_u32(vshrq_n_u32(input, 31));
++    // Merge the two pairs together with a 64-bit unsigned shift right + add.
++    uint8x16_t paired =
++        vreinterpretq_u8_u64(vsraq_n_u64(high_bits, high_bits, 31));
++    // Extract the result.
++    return vgetq_lane_u8(paired, 0) | (vgetq_lane_u8(paired, 8) << 2);
++#endif
++}
++
++// Multiply packed single-precision (32-bit) floating-point elements in a and b,
++// and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mul_ps
++FORCE_INLINE __m128 _mm_mul_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_f32(
++        vmulq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++}
++
++// Multiply the lower single-precision (32-bit) floating-point element in a and
++// b, store the result in the lower element of dst, and copy the upper 3 packed
++// elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mul_ss
++FORCE_INLINE __m128 _mm_mul_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_mul_ps(a, b));
++}
++
++// Multiply the packed unsigned 16-bit integers in a and b, producing
++// intermediate 32-bit integers, and store the high 16 bits of the intermediate
++// integers in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mulhi_pu16
++FORCE_INLINE __m64 _mm_mulhi_pu16(__m64 a, __m64 b)
++{
++    return vreinterpret_m64_u16(vshrn_n_u32(
++        vmull_u16(vreinterpret_u16_m64(a), vreinterpret_u16_m64(b)), 16));
++}
++
++// Compute the bitwise OR of packed single-precision (32-bit) floating-point
++// elements in a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_or_ps
++FORCE_INLINE __m128 _mm_or_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_s32(
++        vorrq_s32(vreinterpretq_s32_m128(a), vreinterpretq_s32_m128(b)));
++}
++
++// Average packed unsigned 8-bit integers in a and b, and store the results in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_m_pavgb
++#define _m_pavgb(a, b) _mm_avg_pu8(a, b)
++
++// Average packed unsigned 16-bit integers in a and b, and store the results in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_m_pavgw
++#define _m_pavgw(a, b) _mm_avg_pu16(a, b)
++
++// Extract a 16-bit integer from a, selected with imm8, and store the result in
++// the lower element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_m_pextrw
++#define _m_pextrw(a, imm) _mm_extract_pi16(a, imm)
++
++// Copy a to dst, and insert the 16-bit integer i into dst at the location
++// specified by imm8.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=m_pinsrw
++#define _m_pinsrw(a, i, imm) _mm_insert_pi16(a, i, imm)
++
++// Compare packed signed 16-bit integers in a and b, and store packed maximum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_m_pmaxsw
++#define _m_pmaxsw(a, b) _mm_max_pi16(a, b)
++
++// Compare packed unsigned 8-bit integers in a and b, and store packed maximum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_m_pmaxub
++#define _m_pmaxub(a, b) _mm_max_pu8(a, b)
++
++// Compare packed signed 16-bit integers in a and b, and store packed minimum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_m_pminsw
++#define _m_pminsw(a, b) _mm_min_pi16(a, b)
++
++// Compare packed unsigned 8-bit integers in a and b, and store packed minimum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_m_pminub
++#define _m_pminub(a, b) _mm_min_pu8(a, b)
++
++// Create mask from the most significant bit of each 8-bit element in a, and
++// store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_m_pmovmskb
++#define _m_pmovmskb(a) _mm_movemask_pi8(a)
++
++// Multiply the packed unsigned 16-bit integers in a and b, producing
++// intermediate 32-bit integers, and store the high 16 bits of the intermediate
++// integers in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_m_pmulhuw
++#define _m_pmulhuw(a, b) _mm_mulhi_pu16(a, b)
++
++// Fetch the line of data from memory that contains address p to a location in
++// the cache hierarchy specified by the locality hint i.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_prefetch
++FORCE_INLINE void _mm_prefetch(char const *p, int i)
++{
++    (void) i;
++#if defined(_MSC_VER)
++    switch (i) {
++    case _MM_HINT_NTA:
++        __prefetch2(p, 1);
++        break;
++    case _MM_HINT_T0:
++        __prefetch2(p, 0);
++        break;
++    case _MM_HINT_T1:
++        __prefetch2(p, 2);
++        break;
++    case _MM_HINT_T2:
++        __prefetch2(p, 4);
++        break;
++    }
++#else
++    switch (i) {
++    case _MM_HINT_NTA:
++        __builtin_prefetch(p, 0, 0);
++        break;
++    case _MM_HINT_T0:
++        __builtin_prefetch(p, 0, 3);
++        break;
++    case _MM_HINT_T1:
++        __builtin_prefetch(p, 0, 2);
++        break;
++    case _MM_HINT_T2:
++        __builtin_prefetch(p, 0, 1);
++        break;
++    }
++#endif
++}
++
++// Compute the absolute differences of packed unsigned 8-bit integers in a and
++// b, then horizontally sum each consecutive 8 differences to produce four
++// unsigned 16-bit integers, and pack these unsigned 16-bit integers in the low
++// 16 bits of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=m_psadbw
++#define _m_psadbw(a, b) _mm_sad_pu8(a, b)
++
++// Shuffle 16-bit integers in a using the control in imm8, and store the results
++// in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_m_pshufw
++#define _m_pshufw(a, imm) _mm_shuffle_pi16(a, imm)
++
++// Compute the approximate reciprocal of packed single-precision (32-bit)
++// floating-point elements in a, and store the results in dst. The maximum
++// relative error for this approximation is less than 1.5*2^-12.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_rcp_ps
++FORCE_INLINE __m128 _mm_rcp_ps(__m128 in)
++{
++    float32x4_t recip = vrecpeq_f32(vreinterpretq_f32_m128(in));
++    recip = vmulq_f32(recip, vrecpsq_f32(recip, vreinterpretq_f32_m128(in)));
++#if SSE2NEON_PRECISE_DIV
++    // Additional Netwon-Raphson iteration for accuracy
++    recip = vmulq_f32(recip, vrecpsq_f32(recip, vreinterpretq_f32_m128(in)));
++#endif
++    return vreinterpretq_m128_f32(recip);
++}
++
++// Compute the approximate reciprocal of the lower single-precision (32-bit)
++// floating-point element in a, store the result in the lower element of dst,
++// and copy the upper 3 packed elements from a to the upper elements of dst. The
++// maximum relative error for this approximation is less than 1.5*2^-12.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_rcp_ss
++FORCE_INLINE __m128 _mm_rcp_ss(__m128 a)
++{
++    return _mm_move_ss(a, _mm_rcp_ps(a));
++}
++
++// Compute the approximate reciprocal square root of packed single-precision
++// (32-bit) floating-point elements in a, and store the results in dst. The
++// maximum relative error for this approximation is less than 1.5*2^-12.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_rsqrt_ps
++FORCE_INLINE __m128 _mm_rsqrt_ps(__m128 in)
++{
++    float32x4_t out = vrsqrteq_f32(vreinterpretq_f32_m128(in));
++
++    // Generate masks for detecting whether input has any 0.0f/-0.0f
++    // (which becomes positive/negative infinity by IEEE-754 arithmetic rules).
++    const uint32x4_t pos_inf = vdupq_n_u32(0x7F800000);
++    const uint32x4_t neg_inf = vdupq_n_u32(0xFF800000);
++    const uint32x4_t has_pos_zero =
++        vceqq_u32(pos_inf, vreinterpretq_u32_f32(out));
++    const uint32x4_t has_neg_zero =
++        vceqq_u32(neg_inf, vreinterpretq_u32_f32(out));
++
++    out = vmulq_f32(
++        out, vrsqrtsq_f32(vmulq_f32(vreinterpretq_f32_m128(in), out), out));
++#if SSE2NEON_PRECISE_SQRT
++    // Additional Netwon-Raphson iteration for accuracy
++    out = vmulq_f32(
++        out, vrsqrtsq_f32(vmulq_f32(vreinterpretq_f32_m128(in), out), out));
++#endif
++
++    // Set output vector element to infinity/negative-infinity if
++    // the corresponding input vector element is 0.0f/-0.0f.
++    out = vbslq_f32(has_pos_zero, (float32x4_t) pos_inf, out);
++    out = vbslq_f32(has_neg_zero, (float32x4_t) neg_inf, out);
++
++    return vreinterpretq_m128_f32(out);
++}
++
++// Compute the approximate reciprocal square root of the lower single-precision
++// (32-bit) floating-point element in a, store the result in the lower element
++// of dst, and copy the upper 3 packed elements from a to the upper elements of
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_rsqrt_ss
++FORCE_INLINE __m128 _mm_rsqrt_ss(__m128 in)
++{
++    return vsetq_lane_f32(vgetq_lane_f32(_mm_rsqrt_ps(in), 0), in, 0);
++}
++
++// Compute the absolute differences of packed unsigned 8-bit integers in a and
++// b, then horizontally sum each consecutive 8 differences to produce four
++// unsigned 16-bit integers, and pack these unsigned 16-bit integers in the low
++// 16 bits of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sad_pu8
++FORCE_INLINE __m64 _mm_sad_pu8(__m64 a, __m64 b)
++{
++    uint64x1_t t = vpaddl_u32(vpaddl_u16(
++        vpaddl_u8(vabd_u8(vreinterpret_u8_m64(a), vreinterpret_u8_m64(b)))));
++    return vreinterpret_m64_u16(
++        vset_lane_u16((int) vget_lane_u64(t, 0), vdup_n_u16(0), 0));
++}
++
++// Macro: Set the flush zero bits of the MXCSR control and status register to
++// the value in unsigned 32-bit integer a. The flush zero may contain any of the
++// following flags: _MM_FLUSH_ZERO_ON or _MM_FLUSH_ZERO_OFF
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_MM_SET_FLUSH_ZERO_MODE
++FORCE_INLINE void _sse2neon_mm_set_flush_zero_mode(unsigned int flag)
++{
++    // AArch32 Advanced SIMD arithmetic always uses the Flush-to-zero setting,
++    // regardless of the value of the FZ bit.
++    union {
++        fpcr_bitfield field;
++#if defined(__aarch64__) || defined(_M_ARM64)
++        uint64_t value;
++#else
++        uint32_t value;
++#endif
++    } r;
++
++#if defined(__aarch64__) || defined(_M_ARM64)
++    r.value = _sse2neon_get_fpcr();
++#else
++    __asm__ __volatile__("vmrs %0, FPSCR" : "=r"(r.value)); /* read */
++#endif
++
++    r.field.bit24 = (flag & _MM_FLUSH_ZERO_MASK) == _MM_FLUSH_ZERO_ON;
++
++#if defined(__aarch64__) || defined(_M_ARM64)
++    _sse2neon_set_fpcr(r.value);
++#else
++    __asm__ __volatile__("vmsr FPSCR, %0" ::"r"(r));        /* write */
++#endif
++}
++
++// Set packed single-precision (32-bit) floating-point elements in dst with the
++// supplied values.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set_ps
++FORCE_INLINE __m128 _mm_set_ps(float w, float z, float y, float x)
++{
++    float ALIGN_STRUCT(16) data[4] = {x, y, z, w};
++    return vreinterpretq_m128_f32(vld1q_f32(data));
++}
++
++// Broadcast single-precision (32-bit) floating-point value a to all elements of
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set_ps1
++FORCE_INLINE __m128 _mm_set_ps1(float _w)
++{
++    return vreinterpretq_m128_f32(vdupq_n_f32(_w));
++}
++
++// Macro: Set the rounding mode bits of the MXCSR control and status register to
++// the value in unsigned 32-bit integer a. The rounding mode may contain any of
++// the following flags: _MM_ROUND_NEAREST, _MM_ROUND_DOWN, _MM_ROUND_UP,
++// _MM_ROUND_TOWARD_ZERO
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_MM_SET_ROUNDING_MODE
++FORCE_INLINE void _MM_SET_ROUNDING_MODE(int rounding)
++{
++    union {
++        fpcr_bitfield field;
++#if defined(__aarch64__) || defined(_M_ARM64)
++        uint64_t value;
++#else
++        uint32_t value;
++#endif
++    } r;
++
++#if defined(__aarch64__) || defined(_M_ARM64)
++    r.value = _sse2neon_get_fpcr();
++#else
++    __asm__ __volatile__("vmrs %0, FPSCR" : "=r"(r.value)); /* read */
++#endif
++
++    switch (rounding) {
++    case _MM_ROUND_TOWARD_ZERO:
++        r.field.bit22 = 1;
++        r.field.bit23 = 1;
++        break;
++    case _MM_ROUND_DOWN:
++        r.field.bit22 = 0;
++        r.field.bit23 = 1;
++        break;
++    case _MM_ROUND_UP:
++        r.field.bit22 = 1;
++        r.field.bit23 = 0;
++        break;
++    default:  //_MM_ROUND_NEAREST
++        r.field.bit22 = 0;
++        r.field.bit23 = 0;
++    }
++
++#if defined(__aarch64__) || defined(_M_ARM64)
++    _sse2neon_set_fpcr(r.value);
++#else
++    __asm__ __volatile__("vmsr FPSCR, %0" ::"r"(r));        /* write */
++#endif
++}
++
++// Copy single-precision (32-bit) floating-point element a to the lower element
++// of dst, and zero the upper 3 elements.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set_ss
++FORCE_INLINE __m128 _mm_set_ss(float a)
++{
++    return vreinterpretq_m128_f32(vsetq_lane_f32(a, vdupq_n_f32(0), 0));
++}
++
++// Broadcast single-precision (32-bit) floating-point value a to all elements of
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set1_ps
++FORCE_INLINE __m128 _mm_set1_ps(float _w)
++{
++    return vreinterpretq_m128_f32(vdupq_n_f32(_w));
++}
++
++// Set the MXCSR control and status register with the value in unsigned 32-bit
++// integer a.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_setcsr
++// FIXME: _mm_setcsr() implementation supports changing the rounding mode only.
++FORCE_INLINE void _mm_setcsr(unsigned int a)
++{
++    _MM_SET_ROUNDING_MODE(a);
++}
++
++// Get the unsigned 32-bit value of the MXCSR control and status register.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_getcsr
++// FIXME: _mm_getcsr() implementation supports reading the rounding mode only.
++FORCE_INLINE unsigned int _mm_getcsr(void)
++{
++    return _MM_GET_ROUNDING_MODE();
++}
++
++// Set packed single-precision (32-bit) floating-point elements in dst with the
++// supplied values in reverse order.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_setr_ps
++FORCE_INLINE __m128 _mm_setr_ps(float w, float z, float y, float x)
++{
++    float ALIGN_STRUCT(16) data[4] = {w, z, y, x};
++    return vreinterpretq_m128_f32(vld1q_f32(data));
++}
++
++// Return vector of type __m128 with all elements set to zero.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_setzero_ps
++FORCE_INLINE __m128 _mm_setzero_ps(void)
++{
++    return vreinterpretq_m128_f32(vdupq_n_f32(0));
++}
++
++// Shuffle 16-bit integers in a using the control in imm8, and store the results
++// in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_shuffle_pi16
++#ifdef _sse2neon_shuffle
++#define _mm_shuffle_pi16(a, imm)                                       \
++    vreinterpret_m64_s16(vshuffle_s16(                                 \
++        vreinterpret_s16_m64(a), vreinterpret_s16_m64(a), (imm & 0x3), \
++        ((imm >> 2) & 0x3), ((imm >> 4) & 0x3), ((imm >> 6) & 0x3)))
++#else
++#define _mm_shuffle_pi16(a, imm)                                              \
++    _sse2neon_define1(                                                        \
++        __m64, a, int16x4_t ret;                                              \
++        ret = vmov_n_s16(                                                     \
++            vget_lane_s16(vreinterpret_s16_m64(_a), (imm) & (0x3)));          \
++        ret = vset_lane_s16(                                                  \
++            vget_lane_s16(vreinterpret_s16_m64(_a), ((imm) >> 2) & 0x3), ret, \
++            1);                                                               \
++        ret = vset_lane_s16(                                                  \
++            vget_lane_s16(vreinterpret_s16_m64(_a), ((imm) >> 4) & 0x3), ret, \
++            2);                                                               \
++        ret = vset_lane_s16(                                                  \
++            vget_lane_s16(vreinterpret_s16_m64(_a), ((imm) >> 6) & 0x3), ret, \
++            3);                                                               \
++        _sse2neon_return(vreinterpret_m64_s16(ret));)
++#endif
++
++// Perform a serializing operation on all store-to-memory instructions that were
++// issued prior to this instruction. Guarantees that every store instruction
++// that precedes, in program order, is globally visible before any store
++// instruction which follows the fence in program order.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sfence
++FORCE_INLINE void _mm_sfence(void)
++{
++    _sse2neon_smp_mb();
++}
++
++// Perform a serializing operation on all load-from-memory and store-to-memory
++// instructions that were issued prior to this instruction. Guarantees that
++// every memory access that precedes, in program order, the memory fence
++// instruction is globally visible before any memory instruction which follows
++// the fence in program order.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mfence
++FORCE_INLINE void _mm_mfence(void)
++{
++    _sse2neon_smp_mb();
++}
++
++// Perform a serializing operation on all load-from-memory instructions that
++// were issued prior to this instruction. Guarantees that every load instruction
++// that precedes, in program order, is globally visible before any load
++// instruction which follows the fence in program order.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_lfence
++FORCE_INLINE void _mm_lfence(void)
++{
++    _sse2neon_smp_mb();
++}
++
++// FORCE_INLINE __m128 _mm_shuffle_ps(__m128 a, __m128 b, __constrange(0,255)
++// int imm)
++#ifdef _sse2neon_shuffle
++#define _mm_shuffle_ps(a, b, imm)                                              \
++    __extension__({                                                            \
++        float32x4_t _input1 = vreinterpretq_f32_m128(a);                       \
++        float32x4_t _input2 = vreinterpretq_f32_m128(b);                       \
++        float32x4_t _shuf =                                                    \
++            vshuffleq_s32(_input1, _input2, (imm) & (0x3), ((imm) >> 2) & 0x3, \
++                          (((imm) >> 4) & 0x3) + 4, (((imm) >> 6) & 0x3) + 4); \
++        vreinterpretq_m128_f32(_shuf);                                         \
++    })
++#else  // generic
++#define _mm_shuffle_ps(a, b, imm)                            \
++    _sse2neon_define2(                                       \
++        __m128, a, b, __m128 ret; switch (imm) {             \
++            case _MM_SHUFFLE(1, 0, 3, 2):                    \
++                ret = _mm_shuffle_ps_1032(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(2, 3, 0, 1):                    \
++                ret = _mm_shuffle_ps_2301(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(0, 3, 2, 1):                    \
++                ret = _mm_shuffle_ps_0321(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(2, 1, 0, 3):                    \
++                ret = _mm_shuffle_ps_2103(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(1, 0, 1, 0):                    \
++                ret = _mm_movelh_ps(_a, _b);                 \
++                break;                                       \
++            case _MM_SHUFFLE(1, 0, 0, 1):                    \
++                ret = _mm_shuffle_ps_1001(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(0, 1, 0, 1):                    \
++                ret = _mm_shuffle_ps_0101(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(3, 2, 1, 0):                    \
++                ret = _mm_shuffle_ps_3210(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(0, 0, 1, 1):                    \
++                ret = _mm_shuffle_ps_0011(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(0, 0, 2, 2):                    \
++                ret = _mm_shuffle_ps_0022(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(2, 2, 0, 0):                    \
++                ret = _mm_shuffle_ps_2200(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(3, 2, 0, 2):                    \
++                ret = _mm_shuffle_ps_3202(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(3, 2, 3, 2):                    \
++                ret = _mm_movehl_ps(_b, _a);                 \
++                break;                                       \
++            case _MM_SHUFFLE(1, 1, 3, 3):                    \
++                ret = _mm_shuffle_ps_1133(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(2, 0, 1, 0):                    \
++                ret = _mm_shuffle_ps_2010(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(2, 0, 0, 1):                    \
++                ret = _mm_shuffle_ps_2001(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(2, 0, 3, 2):                    \
++                ret = _mm_shuffle_ps_2032(_a, _b);           \
++                break;                                       \
++            default:                                         \
++                ret = _mm_shuffle_ps_default(_a, _b, (imm)); \
++                break;                                       \
++        } _sse2neon_return(ret);)
++#endif
++
++// Compute the square root of packed single-precision (32-bit) floating-point
++// elements in a, and store the results in dst.
++// Due to ARMv7-A NEON's lack of a precise square root intrinsic, we implement
++// square root by multiplying input in with its reciprocal square root before
++// using the Newton-Raphson method to approximate the results.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sqrt_ps
++FORCE_INLINE __m128 _mm_sqrt_ps(__m128 in)
++{
++#if (defined(__aarch64__) || defined(_M_ARM64)) && !SSE2NEON_PRECISE_SQRT
++    return vreinterpretq_m128_f32(vsqrtq_f32(vreinterpretq_f32_m128(in)));
++#else
++    float32x4_t recip = vrsqrteq_f32(vreinterpretq_f32_m128(in));
++
++    // Test for vrsqrteq_f32(0) -> positive infinity case.
++    // Change to zero, so that s * 1/sqrt(s) result is zero too.
++    const uint32x4_t pos_inf = vdupq_n_u32(0x7F800000);
++    const uint32x4_t div_by_zero =
++        vceqq_u32(pos_inf, vreinterpretq_u32_f32(recip));
++    recip = vreinterpretq_f32_u32(
++        vandq_u32(vmvnq_u32(div_by_zero), vreinterpretq_u32_f32(recip)));
++
++    recip = vmulq_f32(
++        vrsqrtsq_f32(vmulq_f32(recip, recip), vreinterpretq_f32_m128(in)),
++        recip);
++    // Additional Netwon-Raphson iteration for accuracy
++    recip = vmulq_f32(
++        vrsqrtsq_f32(vmulq_f32(recip, recip), vreinterpretq_f32_m128(in)),
++        recip);
++
++    // sqrt(s) = s * 1/sqrt(s)
++    return vreinterpretq_m128_f32(vmulq_f32(vreinterpretq_f32_m128(in), recip));
++#endif
++}
++
++// Compute the square root of the lower single-precision (32-bit) floating-point
++// element in a, store the result in the lower element of dst, and copy the
++// upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sqrt_ss
++FORCE_INLINE __m128 _mm_sqrt_ss(__m128 in)
++{
++    float32_t value =
++        vgetq_lane_f32(vreinterpretq_f32_m128(_mm_sqrt_ps(in)), 0);
++    return vreinterpretq_m128_f32(
++        vsetq_lane_f32(value, vreinterpretq_f32_m128(in), 0));
++}
++
++// Store 128-bits (composed of 4 packed single-precision (32-bit) floating-point
++// elements) from a into memory. mem_addr must be aligned on a 16-byte boundary
++// or a general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_store_ps
++FORCE_INLINE void _mm_store_ps(float *p, __m128 a)
++{
++    vst1q_f32(p, vreinterpretq_f32_m128(a));
++}
++
++// Store the lower single-precision (32-bit) floating-point element from a into
++// 4 contiguous elements in memory. mem_addr must be aligned on a 16-byte
++// boundary or a general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_store_ps1
++FORCE_INLINE void _mm_store_ps1(float *p, __m128 a)
++{
++    float32_t a0 = vgetq_lane_f32(vreinterpretq_f32_m128(a), 0);
++    vst1q_f32(p, vdupq_n_f32(a0));
++}
++
++// Store the lower single-precision (32-bit) floating-point element from a into
++// memory. mem_addr does not need to be aligned on any particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_store_ss
++FORCE_INLINE void _mm_store_ss(float *p, __m128 a)
++{
++    vst1q_lane_f32(p, vreinterpretq_f32_m128(a), 0);
++}
++
++// Store the lower single-precision (32-bit) floating-point element from a into
++// 4 contiguous elements in memory. mem_addr must be aligned on a 16-byte
++// boundary or a general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_store1_ps
++#define _mm_store1_ps _mm_store_ps1
++
++// Store the upper 2 single-precision (32-bit) floating-point elements from a
++// into memory.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storeh_pi
++FORCE_INLINE void _mm_storeh_pi(__m64 *p, __m128 a)
++{
++    *p = vreinterpret_m64_f32(vget_high_f32(a));
++}
++
++// Store the lower 2 single-precision (32-bit) floating-point elements from a
++// into memory.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storel_pi
++FORCE_INLINE void _mm_storel_pi(__m64 *p, __m128 a)
++{
++    *p = vreinterpret_m64_f32(vget_low_f32(a));
++}
++
++// Store 4 single-precision (32-bit) floating-point elements from a into memory
++// in reverse order. mem_addr must be aligned on a 16-byte boundary or a
++// general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storer_ps
++FORCE_INLINE void _mm_storer_ps(float *p, __m128 a)
++{
++    float32x4_t tmp = vrev64q_f32(vreinterpretq_f32_m128(a));
++    float32x4_t rev = vextq_f32(tmp, tmp, 2);
++    vst1q_f32(p, rev);
++}
++
++// Store 128-bits (composed of 4 packed single-precision (32-bit) floating-point
++// elements) from a into memory. mem_addr does not need to be aligned on any
++// particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storeu_ps
++FORCE_INLINE void _mm_storeu_ps(float *p, __m128 a)
++{
++    vst1q_f32(p, vreinterpretq_f32_m128(a));
++}
++
++// Stores 16-bits of integer data a at the address p.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storeu_si16
++FORCE_INLINE void _mm_storeu_si16(void *p, __m128i a)
++{
++    vst1q_lane_s16((int16_t *) p, vreinterpretq_s16_m128i(a), 0);
++}
++
++// Stores 64-bits of integer data a at the address p.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storeu_si64
++FORCE_INLINE void _mm_storeu_si64(void *p, __m128i a)
++{
++    vst1q_lane_s64((int64_t *) p, vreinterpretq_s64_m128i(a), 0);
++}
++
++// Store 64-bits of integer data from a into memory using a non-temporal memory
++// hint.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_stream_pi
++FORCE_INLINE void _mm_stream_pi(__m64 *p, __m64 a)
++{
++    vst1_s64((int64_t *) p, vreinterpret_s64_m64(a));
++}
++
++// Store 128-bits (composed of 4 packed single-precision (32-bit) floating-
++// point elements) from a into memory using a non-temporal memory hint.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_stream_ps
++FORCE_INLINE void _mm_stream_ps(float *p, __m128 a)
++{
++#if __has_builtin(__builtin_nontemporal_store)
++    __builtin_nontemporal_store(a, (float32x4_t *) p);
++#else
++    vst1q_f32(p, vreinterpretq_f32_m128(a));
++#endif
++}
++
++// Subtract packed single-precision (32-bit) floating-point elements in b from
++// packed single-precision (32-bit) floating-point elements in a, and store the
++// results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sub_ps
++FORCE_INLINE __m128 _mm_sub_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_f32(
++        vsubq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++}
++
++// Subtract the lower single-precision (32-bit) floating-point element in b from
++// the lower single-precision (32-bit) floating-point element in a, store the
++// result in the lower element of dst, and copy the upper 3 packed elements from
++// a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sub_ss
++FORCE_INLINE __m128 _mm_sub_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_sub_ps(a, b));
++}
++
++// Macro: Transpose the 4x4 matrix formed by the 4 rows of single-precision
++// (32-bit) floating-point elements in row0, row1, row2, and row3, and store the
++// transposed matrix in these vectors (row0 now contains column 0, etc.).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=MM_TRANSPOSE4_PS
++#define _MM_TRANSPOSE4_PS(row0, row1, row2, row3)         \
++    do {                                                  \
++        float32x4x2_t ROW01 = vtrnq_f32(row0, row1);      \
++        float32x4x2_t ROW23 = vtrnq_f32(row2, row3);      \
++        row0 = vcombine_f32(vget_low_f32(ROW01.val[0]),   \
++                            vget_low_f32(ROW23.val[0]));  \
++        row1 = vcombine_f32(vget_low_f32(ROW01.val[1]),   \
++                            vget_low_f32(ROW23.val[1]));  \
++        row2 = vcombine_f32(vget_high_f32(ROW01.val[0]),  \
++                            vget_high_f32(ROW23.val[0])); \
++        row3 = vcombine_f32(vget_high_f32(ROW01.val[1]),  \
++                            vget_high_f32(ROW23.val[1])); \
++    } while (0)
++
++// according to the documentation, these intrinsics behave the same as the
++// non-'u' versions.  We'll just alias them here.
++#define _mm_ucomieq_ss _mm_comieq_ss
++#define _mm_ucomige_ss _mm_comige_ss
++#define _mm_ucomigt_ss _mm_comigt_ss
++#define _mm_ucomile_ss _mm_comile_ss
++#define _mm_ucomilt_ss _mm_comilt_ss
++#define _mm_ucomineq_ss _mm_comineq_ss
++
++// Return vector of type __m128i with undefined elements.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=mm_undefined_si128
++FORCE_INLINE __m128i _mm_undefined_si128(void)
++{
++#if defined(__GNUC__) || defined(__clang__)
++#pragma GCC diagnostic push
++#pragma GCC diagnostic ignored "-Wuninitialized"
++#endif
++    __m128i a;
++#if defined(_MSC_VER)
++    a = _mm_setzero_si128();
++#endif
++    return a;
++#if defined(__GNUC__) || defined(__clang__)
++#pragma GCC diagnostic pop
++#endif
++}
++
++// Return vector of type __m128 with undefined elements.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_undefined_ps
++FORCE_INLINE __m128 _mm_undefined_ps(void)
++{
++#if defined(__GNUC__) || defined(__clang__)
++#pragma GCC diagnostic push
++#pragma GCC diagnostic ignored "-Wuninitialized"
++#endif
++    __m128 a;
++#if defined(_MSC_VER)
++    a = _mm_setzero_ps();
++#endif
++    return a;
++#if defined(__GNUC__) || defined(__clang__)
++#pragma GCC diagnostic pop
++#endif
++}
++
++// Unpack and interleave single-precision (32-bit) floating-point elements from
++// the high half a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_unpackhi_ps
++FORCE_INLINE __m128 _mm_unpackhi_ps(__m128 a, __m128 b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128_f32(
++        vzip2q_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++#else
++    float32x2_t a1 = vget_high_f32(vreinterpretq_f32_m128(a));
++    float32x2_t b1 = vget_high_f32(vreinterpretq_f32_m128(b));
++    float32x2x2_t result = vzip_f32(a1, b1);
++    return vreinterpretq_m128_f32(vcombine_f32(result.val[0], result.val[1]));
++#endif
++}
++
++// Unpack and interleave single-precision (32-bit) floating-point elements from
++// the low half of a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_unpacklo_ps
++FORCE_INLINE __m128 _mm_unpacklo_ps(__m128 a, __m128 b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128_f32(
++        vzip1q_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++#else
++    float32x2_t a1 = vget_low_f32(vreinterpretq_f32_m128(a));
++    float32x2_t b1 = vget_low_f32(vreinterpretq_f32_m128(b));
++    float32x2x2_t result = vzip_f32(a1, b1);
++    return vreinterpretq_m128_f32(vcombine_f32(result.val[0], result.val[1]));
++#endif
++}
++
++// Compute the bitwise XOR of packed single-precision (32-bit) floating-point
++// elements in a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_xor_ps
++FORCE_INLINE __m128 _mm_xor_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_s32(
++        veorq_s32(vreinterpretq_s32_m128(a), vreinterpretq_s32_m128(b)));
++}
++
++/* SSE2 */
++
++// Add packed 16-bit integers in a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_add_epi16
++FORCE_INLINE __m128i _mm_add_epi16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s16(
++        vaddq_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b)));
++}
++
++// Add packed 32-bit integers in a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_add_epi32
++FORCE_INLINE __m128i _mm_add_epi32(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s32(
++        vaddq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++}
++
++// Add packed 64-bit integers in a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_add_epi64
++FORCE_INLINE __m128i _mm_add_epi64(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s64(
++        vaddq_s64(vreinterpretq_s64_m128i(a), vreinterpretq_s64_m128i(b)));
++}
++
++// Add packed 8-bit integers in a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_add_epi8
++FORCE_INLINE __m128i _mm_add_epi8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s8(
++        vaddq_s8(vreinterpretq_s8_m128i(a), vreinterpretq_s8_m128i(b)));
++}
++
++// Add packed double-precision (64-bit) floating-point elements in a and b, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_add_pd
++FORCE_INLINE __m128d _mm_add_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vaddq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#else
++    double *da = (double *) &a;
++    double *db = (double *) &b;
++    double c[2];
++    c[0] = da[0] + db[0];
++    c[1] = da[1] + db[1];
++    return vld1q_f32((float32_t *) c);
++#endif
++}
++
++// Add the lower double-precision (64-bit) floating-point element in a and b,
++// store the result in the lower element of dst, and copy the upper element from
++// a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_add_sd
++FORCE_INLINE __m128d _mm_add_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return _mm_move_sd(a, _mm_add_pd(a, b));
++#else
++    double *da = (double *) &a;
++    double *db = (double *) &b;
++    double c[2];
++    c[0] = da[0] + db[0];
++    c[1] = da[1];
++    return vld1q_f32((float32_t *) c);
++#endif
++}
++
++// Add 64-bit integers a and b, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_add_si64
++FORCE_INLINE __m64 _mm_add_si64(__m64 a, __m64 b)
++{
++    return vreinterpret_m64_s64(
++        vadd_s64(vreinterpret_s64_m64(a), vreinterpret_s64_m64(b)));
++}
++
++// Add packed signed 16-bit integers in a and b using saturation, and store the
++// results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_adds_epi16
++FORCE_INLINE __m128i _mm_adds_epi16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s16(
++        vqaddq_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b)));
++}
++
++// Add packed signed 8-bit integers in a and b using saturation, and store the
++// results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_adds_epi8
++FORCE_INLINE __m128i _mm_adds_epi8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s8(
++        vqaddq_s8(vreinterpretq_s8_m128i(a), vreinterpretq_s8_m128i(b)));
++}
++
++// Add packed unsigned 16-bit integers in a and b using saturation, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_adds_epu16
++FORCE_INLINE __m128i _mm_adds_epu16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u16(
++        vqaddq_u16(vreinterpretq_u16_m128i(a), vreinterpretq_u16_m128i(b)));
++}
++
++// Add packed unsigned 8-bit integers in a and b using saturation, and store the
++// results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_adds_epu8
++FORCE_INLINE __m128i _mm_adds_epu8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u8(
++        vqaddq_u8(vreinterpretq_u8_m128i(a), vreinterpretq_u8_m128i(b)));
++}
++
++// Compute the bitwise AND of packed double-precision (64-bit) floating-point
++// elements in a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_and_pd
++FORCE_INLINE __m128d _mm_and_pd(__m128d a, __m128d b)
++{
++    return vreinterpretq_m128d_s64(
++        vandq_s64(vreinterpretq_s64_m128d(a), vreinterpretq_s64_m128d(b)));
++}
++
++// Compute the bitwise AND of 128 bits (representing integer data) in a and b,
++// and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_and_si128
++FORCE_INLINE __m128i _mm_and_si128(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s32(
++        vandq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++}
++
++// Compute the bitwise NOT of packed double-precision (64-bit) floating-point
++// elements in a and then AND with b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_andnot_pd
++FORCE_INLINE __m128d _mm_andnot_pd(__m128d a, __m128d b)
++{
++    // *NOTE* argument swap
++    return vreinterpretq_m128d_s64(
++        vbicq_s64(vreinterpretq_s64_m128d(b), vreinterpretq_s64_m128d(a)));
++}
++
++// Compute the bitwise NOT of 128 bits (representing integer data) in a and then
++// AND with b, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_andnot_si128
++FORCE_INLINE __m128i _mm_andnot_si128(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s32(
++        vbicq_s32(vreinterpretq_s32_m128i(b),
++                  vreinterpretq_s32_m128i(a)));  // *NOTE* argument swap
++}
++
++// Average packed unsigned 16-bit integers in a and b, and store the results in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_avg_epu16
++FORCE_INLINE __m128i _mm_avg_epu16(__m128i a, __m128i b)
++{
++    return (__m128i) vrhaddq_u16(vreinterpretq_u16_m128i(a),
++                                 vreinterpretq_u16_m128i(b));
++}
++
++// Average packed unsigned 8-bit integers in a and b, and store the results in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_avg_epu8
++FORCE_INLINE __m128i _mm_avg_epu8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u8(
++        vrhaddq_u8(vreinterpretq_u8_m128i(a), vreinterpretq_u8_m128i(b)));
++}
++
++// Shift a left by imm8 bytes while shifting in zeros, and store the results in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_bslli_si128
++#define _mm_bslli_si128(a, imm) _mm_slli_si128(a, imm)
++
++// Shift a right by imm8 bytes while shifting in zeros, and store the results in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_bsrli_si128
++#define _mm_bsrli_si128(a, imm) _mm_srli_si128(a, imm)
++
++// Cast vector of type __m128d to type __m128. This intrinsic is only used for
++// compilation and does not generate any instructions, thus it has zero latency.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_castpd_ps
++FORCE_INLINE __m128 _mm_castpd_ps(__m128d a)
++{
++    return vreinterpretq_m128_s64(vreinterpretq_s64_m128d(a));
++}
++
++// Cast vector of type __m128d to type __m128i. This intrinsic is only used for
++// compilation and does not generate any instructions, thus it has zero latency.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_castpd_si128
++FORCE_INLINE __m128i _mm_castpd_si128(__m128d a)
++{
++    return vreinterpretq_m128i_s64(vreinterpretq_s64_m128d(a));
++}
++
++// Cast vector of type __m128 to type __m128d. This intrinsic is only used for
++// compilation and does not generate any instructions, thus it has zero latency.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_castps_pd
++FORCE_INLINE __m128d _mm_castps_pd(__m128 a)
++{
++    return vreinterpretq_m128d_s32(vreinterpretq_s32_m128(a));
++}
++
++// Cast vector of type __m128 to type __m128i. This intrinsic is only used for
++// compilation and does not generate any instructions, thus it has zero latency.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_castps_si128
++FORCE_INLINE __m128i _mm_castps_si128(__m128 a)
++{
++    return vreinterpretq_m128i_s32(vreinterpretq_s32_m128(a));
++}
++
++// Cast vector of type __m128i to type __m128d. This intrinsic is only used for
++// compilation and does not generate any instructions, thus it has zero latency.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_castsi128_pd
++FORCE_INLINE __m128d _mm_castsi128_pd(__m128i a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(vreinterpretq_f64_m128i(a));
++#else
++    return vreinterpretq_m128d_f32(vreinterpretq_f32_m128i(a));
++#endif
++}
++
++// Cast vector of type __m128i to type __m128. This intrinsic is only used for
++// compilation and does not generate any instructions, thus it has zero latency.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_castsi128_ps
++FORCE_INLINE __m128 _mm_castsi128_ps(__m128i a)
++{
++    return vreinterpretq_m128_s32(vreinterpretq_s32_m128i(a));
++}
++
++// Invalidate and flush the cache line that contains p from all levels of the
++// cache hierarchy.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_clflush
++#if defined(__APPLE__)
++#include <libkern/OSCacheControl.h>
++#endif
++FORCE_INLINE void _mm_clflush(void const *p)
++{
++    (void) p;
++
++    /* sys_icache_invalidate is supported since macOS 10.5.
++     * However, it does not work on non-jailbroken iOS devices, although the
++     * compilation is successful.
++     */
++#if defined(__APPLE__)
++    sys_icache_invalidate((void *) (uintptr_t) p, SSE2NEON_CACHELINE_SIZE);
++#elif defined(__GNUC__) || defined(__clang__)
++    uintptr_t ptr = (uintptr_t) p;
++    __builtin___clear_cache((char *) ptr,
++                            (char *) ptr + SSE2NEON_CACHELINE_SIZE);
++#elif (_MSC_VER) && SSE2NEON_INCLUDE_WINDOWS_H
++    FlushInstructionCache(GetCurrentProcess(), p, SSE2NEON_CACHELINE_SIZE);
++#endif
++}
++
++// Compare packed 16-bit integers in a and b for equality, and store the results
++// in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpeq_epi16
++FORCE_INLINE __m128i _mm_cmpeq_epi16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u16(
++        vceqq_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b)));
++}
++
++// Compare packed 32-bit integers in a and b for equality, and store the results
++// in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpeq_epi32
++FORCE_INLINE __m128i _mm_cmpeq_epi32(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u32(
++        vceqq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++}
++
++// Compare packed 8-bit integers in a and b for equality, and store the results
++// in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpeq_epi8
++FORCE_INLINE __m128i _mm_cmpeq_epi8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u8(
++        vceqq_s8(vreinterpretq_s8_m128i(a), vreinterpretq_s8_m128i(b)));
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b
++// for equality, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpeq_pd
++FORCE_INLINE __m128d _mm_cmpeq_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_u64(
++        vceqq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#else
++    // (a == b) -> (a_lo == b_lo) && (a_hi == b_hi)
++    uint32x4_t cmp =
++        vceqq_u32(vreinterpretq_u32_m128d(a), vreinterpretq_u32_m128d(b));
++    uint32x4_t swapped = vrev64q_u32(cmp);
++    return vreinterpretq_m128d_u32(vandq_u32(cmp, swapped));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b for equality, store the result in the lower element of dst, and copy the
++// upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpeq_sd
++FORCE_INLINE __m128d _mm_cmpeq_sd(__m128d a, __m128d b)
++{
++    return _mm_move_sd(a, _mm_cmpeq_pd(a, b));
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b
++// for greater-than-or-equal, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpge_pd
++FORCE_INLINE __m128d _mm_cmpge_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_u64(
++        vcgeq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t b1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] = (*(double *) &a0) >= (*(double *) &b0) ? ~UINT64_C(0) : UINT64_C(0);
++    d[1] = (*(double *) &a1) >= (*(double *) &b1) ? ~UINT64_C(0) : UINT64_C(0);
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b for greater-than-or-equal, store the result in the lower element of dst,
++// and copy the upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpge_sd
++FORCE_INLINE __m128d _mm_cmpge_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return _mm_move_sd(a, _mm_cmpge_pd(a, b));
++#else
++    // expand "_mm_cmpge_pd()" to reduce unnecessary operations
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] = (*(double *) &a0) >= (*(double *) &b0) ? ~UINT64_C(0) : UINT64_C(0);
++    d[1] = a1;
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare packed signed 16-bit integers in a and b for greater-than, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpgt_epi16
++FORCE_INLINE __m128i _mm_cmpgt_epi16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u16(
++        vcgtq_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b)));
++}
++
++// Compare packed signed 32-bit integers in a and b for greater-than, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpgt_epi32
++FORCE_INLINE __m128i _mm_cmpgt_epi32(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u32(
++        vcgtq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++}
++
++// Compare packed signed 8-bit integers in a and b for greater-than, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpgt_epi8
++FORCE_INLINE __m128i _mm_cmpgt_epi8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u8(
++        vcgtq_s8(vreinterpretq_s8_m128i(a), vreinterpretq_s8_m128i(b)));
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b
++// for greater-than, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpgt_pd
++FORCE_INLINE __m128d _mm_cmpgt_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_u64(
++        vcgtq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t b1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] = (*(double *) &a0) > (*(double *) &b0) ? ~UINT64_C(0) : UINT64_C(0);
++    d[1] = (*(double *) &a1) > (*(double *) &b1) ? ~UINT64_C(0) : UINT64_C(0);
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b for greater-than, store the result in the lower element of dst, and copy
++// the upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpgt_sd
++FORCE_INLINE __m128d _mm_cmpgt_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return _mm_move_sd(a, _mm_cmpgt_pd(a, b));
++#else
++    // expand "_mm_cmpge_pd()" to reduce unnecessary operations
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] = (*(double *) &a0) > (*(double *) &b0) ? ~UINT64_C(0) : UINT64_C(0);
++    d[1] = a1;
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b
++// for less-than-or-equal, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmple_pd
++FORCE_INLINE __m128d _mm_cmple_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_u64(
++        vcleq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t b1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] = (*(double *) &a0) <= (*(double *) &b0) ? ~UINT64_C(0) : UINT64_C(0);
++    d[1] = (*(double *) &a1) <= (*(double *) &b1) ? ~UINT64_C(0) : UINT64_C(0);
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b for less-than-or-equal, store the result in the lower element of dst, and
++// copy the upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmple_sd
++FORCE_INLINE __m128d _mm_cmple_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return _mm_move_sd(a, _mm_cmple_pd(a, b));
++#else
++    // expand "_mm_cmpge_pd()" to reduce unnecessary operations
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] = (*(double *) &a0) <= (*(double *) &b0) ? ~UINT64_C(0) : UINT64_C(0);
++    d[1] = a1;
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare packed signed 16-bit integers in a and b for less-than, and store the
++// results in dst. Note: This intrinsic emits the pcmpgtw instruction with the
++// order of the operands switched.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmplt_epi16
++FORCE_INLINE __m128i _mm_cmplt_epi16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u16(
++        vcltq_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b)));
++}
++
++// Compare packed signed 32-bit integers in a and b for less-than, and store the
++// results in dst. Note: This intrinsic emits the pcmpgtd instruction with the
++// order of the operands switched.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmplt_epi32
++FORCE_INLINE __m128i _mm_cmplt_epi32(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u32(
++        vcltq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++}
++
++// Compare packed signed 8-bit integers in a and b for less-than, and store the
++// results in dst. Note: This intrinsic emits the pcmpgtb instruction with the
++// order of the operands switched.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmplt_epi8
++FORCE_INLINE __m128i _mm_cmplt_epi8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u8(
++        vcltq_s8(vreinterpretq_s8_m128i(a), vreinterpretq_s8_m128i(b)));
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b
++// for less-than, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmplt_pd
++FORCE_INLINE __m128d _mm_cmplt_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_u64(
++        vcltq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t b1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] = (*(double *) &a0) < (*(double *) &b0) ? ~UINT64_C(0) : UINT64_C(0);
++    d[1] = (*(double *) &a1) < (*(double *) &b1) ? ~UINT64_C(0) : UINT64_C(0);
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b for less-than, store the result in the lower element of dst, and copy the
++// upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmplt_sd
++FORCE_INLINE __m128d _mm_cmplt_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return _mm_move_sd(a, _mm_cmplt_pd(a, b));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] = (*(double *) &a0) < (*(double *) &b0) ? ~UINT64_C(0) : UINT64_C(0);
++    d[1] = a1;
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b
++// for not-equal, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpneq_pd
++FORCE_INLINE __m128d _mm_cmpneq_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_s32(vmvnq_s32(vreinterpretq_s32_u64(
++        vceqq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)))));
++#else
++    // (a == b) -> (a_lo == b_lo) && (a_hi == b_hi)
++    uint32x4_t cmp =
++        vceqq_u32(vreinterpretq_u32_m128d(a), vreinterpretq_u32_m128d(b));
++    uint32x4_t swapped = vrev64q_u32(cmp);
++    return vreinterpretq_m128d_u32(vmvnq_u32(vandq_u32(cmp, swapped)));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b for not-equal, store the result in the lower element of dst, and copy the
++// upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpneq_sd
++FORCE_INLINE __m128d _mm_cmpneq_sd(__m128d a, __m128d b)
++{
++    return _mm_move_sd(a, _mm_cmpneq_pd(a, b));
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b
++// for not-greater-than-or-equal, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpnge_pd
++FORCE_INLINE __m128d _mm_cmpnge_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_u64(veorq_u64(
++        vcgeq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)),
++        vdupq_n_u64(UINT64_MAX)));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t b1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] =
++        !((*(double *) &a0) >= (*(double *) &b0)) ? ~UINT64_C(0) : UINT64_C(0);
++    d[1] =
++        !((*(double *) &a1) >= (*(double *) &b1)) ? ~UINT64_C(0) : UINT64_C(0);
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b for not-greater-than-or-equal, store the result in the lower element of
++// dst, and copy the upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpnge_sd
++FORCE_INLINE __m128d _mm_cmpnge_sd(__m128d a, __m128d b)
++{
++    return _mm_move_sd(a, _mm_cmpnge_pd(a, b));
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b
++// for not-greater-than, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_cmpngt_pd
++FORCE_INLINE __m128d _mm_cmpngt_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_u64(veorq_u64(
++        vcgtq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)),
++        vdupq_n_u64(UINT64_MAX)));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t b1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] =
++        !((*(double *) &a0) > (*(double *) &b0)) ? ~UINT64_C(0) : UINT64_C(0);
++    d[1] =
++        !((*(double *) &a1) > (*(double *) &b1)) ? ~UINT64_C(0) : UINT64_C(0);
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b for not-greater-than, store the result in the lower element of dst, and
++// copy the upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpngt_sd
++FORCE_INLINE __m128d _mm_cmpngt_sd(__m128d a, __m128d b)
++{
++    return _mm_move_sd(a, _mm_cmpngt_pd(a, b));
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b
++// for not-less-than-or-equal, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpnle_pd
++FORCE_INLINE __m128d _mm_cmpnle_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_u64(veorq_u64(
++        vcleq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)),
++        vdupq_n_u64(UINT64_MAX)));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t b1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] =
++        !((*(double *) &a0) <= (*(double *) &b0)) ? ~UINT64_C(0) : UINT64_C(0);
++    d[1] =
++        !((*(double *) &a1) <= (*(double *) &b1)) ? ~UINT64_C(0) : UINT64_C(0);
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b for not-less-than-or-equal, store the result in the lower element of dst,
++// and copy the upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpnle_sd
++FORCE_INLINE __m128d _mm_cmpnle_sd(__m128d a, __m128d b)
++{
++    return _mm_move_sd(a, _mm_cmpnle_pd(a, b));
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b
++// for not-less-than, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpnlt_pd
++FORCE_INLINE __m128d _mm_cmpnlt_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_u64(veorq_u64(
++        vcltq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)),
++        vdupq_n_u64(UINT64_MAX)));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t b1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] =
++        !((*(double *) &a0) < (*(double *) &b0)) ? ~UINT64_C(0) : UINT64_C(0);
++    d[1] =
++        !((*(double *) &a1) < (*(double *) &b1)) ? ~UINT64_C(0) : UINT64_C(0);
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b for not-less-than, store the result in the lower element of dst, and copy
++// the upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpnlt_sd
++FORCE_INLINE __m128d _mm_cmpnlt_sd(__m128d a, __m128d b)
++{
++    return _mm_move_sd(a, _mm_cmpnlt_pd(a, b));
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b
++// to see if neither is NaN, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpord_pd
++FORCE_INLINE __m128d _mm_cmpord_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    // Excluding NaNs, any two floating point numbers can be compared.
++    uint64x2_t not_nan_a =
++        vceqq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(a));
++    uint64x2_t not_nan_b =
++        vceqq_f64(vreinterpretq_f64_m128d(b), vreinterpretq_f64_m128d(b));
++    return vreinterpretq_m128d_u64(vandq_u64(not_nan_a, not_nan_b));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t b1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] = ((*(double *) &a0) == (*(double *) &a0) &&
++            (*(double *) &b0) == (*(double *) &b0))
++               ? ~UINT64_C(0)
++               : UINT64_C(0);
++    d[1] = ((*(double *) &a1) == (*(double *) &a1) &&
++            (*(double *) &b1) == (*(double *) &b1))
++               ? ~UINT64_C(0)
++               : UINT64_C(0);
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b to see if neither is NaN, store the result in the lower element of dst, and
++// copy the upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpord_sd
++FORCE_INLINE __m128d _mm_cmpord_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return _mm_move_sd(a, _mm_cmpord_pd(a, b));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t d[2];
++    d[0] = ((*(double *) &a0) == (*(double *) &a0) &&
++            (*(double *) &b0) == (*(double *) &b0))
++               ? ~UINT64_C(0)
++               : UINT64_C(0);
++    d[1] = a1;
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b
++// to see if either is NaN, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpunord_pd
++FORCE_INLINE __m128d _mm_cmpunord_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    // Two NaNs are not equal in comparison operation.
++    uint64x2_t not_nan_a =
++        vceqq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(a));
++    uint64x2_t not_nan_b =
++        vceqq_f64(vreinterpretq_f64_m128d(b), vreinterpretq_f64_m128d(b));
++    return vreinterpretq_m128d_s32(
++        vmvnq_s32(vreinterpretq_s32_u64(vandq_u64(not_nan_a, not_nan_b))));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t b1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] = ((*(double *) &a0) == (*(double *) &a0) &&
++            (*(double *) &b0) == (*(double *) &b0))
++               ? UINT64_C(0)
++               : ~UINT64_C(0);
++    d[1] = ((*(double *) &a1) == (*(double *) &a1) &&
++            (*(double *) &b1) == (*(double *) &b1))
++               ? UINT64_C(0)
++               : ~UINT64_C(0);
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b to see if either is NaN, store the result in the lower element of dst, and
++// copy the upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpunord_sd
++FORCE_INLINE __m128d _mm_cmpunord_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return _mm_move_sd(a, _mm_cmpunord_pd(a, b));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t d[2];
++    d[0] = ((*(double *) &a0) == (*(double *) &a0) &&
++            (*(double *) &b0) == (*(double *) &b0))
++               ? UINT64_C(0)
++               : ~UINT64_C(0);
++    d[1] = a1;
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point element in a and b
++// for greater-than-or-equal, and return the boolean result (0 or 1).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_comige_sd
++FORCE_INLINE int _mm_comige_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vgetq_lane_u64(vcgeq_f64(a, b), 0) & 0x1;
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++
++    return (*(double *) &a0 >= *(double *) &b0);
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point element in a and b
++// for greater-than, and return the boolean result (0 or 1).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_comigt_sd
++FORCE_INLINE int _mm_comigt_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vgetq_lane_u64(vcgtq_f64(a, b), 0) & 0x1;
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++
++    return (*(double *) &a0 > *(double *) &b0);
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point element in a and b
++// for less-than-or-equal, and return the boolean result (0 or 1).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_comile_sd
++FORCE_INLINE int _mm_comile_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vgetq_lane_u64(vcleq_f64(a, b), 0) & 0x1;
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++
++    return (*(double *) &a0 <= *(double *) &b0);
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point element in a and b
++// for less-than, and return the boolean result (0 or 1).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_comilt_sd
++FORCE_INLINE int _mm_comilt_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vgetq_lane_u64(vcltq_f64(a, b), 0) & 0x1;
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++
++    return (*(double *) &a0 < *(double *) &b0);
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point element in a and b
++// for equality, and return the boolean result (0 or 1).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_comieq_sd
++FORCE_INLINE int _mm_comieq_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vgetq_lane_u64(vceqq_f64(a, b), 0) & 0x1;
++#else
++    uint32x4_t a_not_nan =
++        vceqq_u32(vreinterpretq_u32_m128d(a), vreinterpretq_u32_m128d(a));
++    uint32x4_t b_not_nan =
++        vceqq_u32(vreinterpretq_u32_m128d(b), vreinterpretq_u32_m128d(b));
++    uint32x4_t a_and_b_not_nan = vandq_u32(a_not_nan, b_not_nan);
++    uint32x4_t a_eq_b =
++        vceqq_u32(vreinterpretq_u32_m128d(a), vreinterpretq_u32_m128d(b));
++    uint64x2_t and_results = vandq_u64(vreinterpretq_u64_u32(a_and_b_not_nan),
++                                       vreinterpretq_u64_u32(a_eq_b));
++    return vgetq_lane_u64(and_results, 0) & 0x1;
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point element in a and b
++// for not-equal, and return the boolean result (0 or 1).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_comineq_sd
++FORCE_INLINE int _mm_comineq_sd(__m128d a, __m128d b)
++{
++    return !_mm_comieq_sd(a, b);
++}
++
++// Convert packed signed 32-bit integers in a to packed double-precision
++// (64-bit) floating-point elements, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepi32_pd
++FORCE_INLINE __m128d _mm_cvtepi32_pd(__m128i a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vcvtq_f64_s64(vmovl_s32(vget_low_s32(vreinterpretq_s32_m128i(a)))));
++#else
++    double a0 = (double) vgetq_lane_s32(vreinterpretq_s32_m128i(a), 0);
++    double a1 = (double) vgetq_lane_s32(vreinterpretq_s32_m128i(a), 1);
++    return _mm_set_pd(a1, a0);
++#endif
++}
++
++// Convert packed signed 32-bit integers in a to packed single-precision
++// (32-bit) floating-point elements, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepi32_ps
++FORCE_INLINE __m128 _mm_cvtepi32_ps(__m128i a)
++{
++    return vreinterpretq_m128_f32(vcvtq_f32_s32(vreinterpretq_s32_m128i(a)));
++}
++
++// Convert packed double-precision (64-bit) floating-point elements in a to
++// packed 32-bit integers, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtpd_epi32
++FORCE_INLINE __m128i _mm_cvtpd_epi32(__m128d a)
++{
++// vrnd32xq_f64 not supported on clang
++#if defined(__ARM_FEATURE_FRINT) && !defined(__clang__)
++    float64x2_t rounded = vrnd32xq_f64(vreinterpretq_f64_m128d(a));
++    int64x2_t integers = vcvtq_s64_f64(rounded);
++    return vreinterpretq_m128i_s32(
++        vcombine_s32(vmovn_s64(integers), vdup_n_s32(0)));
++#else
++    __m128d rnd = _mm_round_pd(a, _MM_FROUND_CUR_DIRECTION);
++    double d0 = ((double *) &rnd)[0];
++    double d1 = ((double *) &rnd)[1];
++    return _mm_set_epi32(0, 0, (int32_t) d1, (int32_t) d0);
++#endif
++}
++
++// Convert packed double-precision (64-bit) floating-point elements in a to
++// packed 32-bit integers, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtpd_pi32
++FORCE_INLINE __m64 _mm_cvtpd_pi32(__m128d a)
++{
++    __m128d rnd = _mm_round_pd(a, _MM_FROUND_CUR_DIRECTION);
++    double d0 = ((double *) &rnd)[0];
++    double d1 = ((double *) &rnd)[1];
++    int32_t ALIGN_STRUCT(16) data[2] = {(int32_t) d0, (int32_t) d1};
++    return vreinterpret_m64_s32(vld1_s32(data));
++}
++
++// Convert packed double-precision (64-bit) floating-point elements in a to
++// packed single-precision (32-bit) floating-point elements, and store the
++// results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtpd_ps
++FORCE_INLINE __m128 _mm_cvtpd_ps(__m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    float32x2_t tmp = vcvt_f32_f64(vreinterpretq_f64_m128d(a));
++    return vreinterpretq_m128_f32(vcombine_f32(tmp, vdup_n_f32(0)));
++#else
++    float a0 = (float) ((double *) &a)[0];
++    float a1 = (float) ((double *) &a)[1];
++    return _mm_set_ps(0, 0, a1, a0);
++#endif
++}
++
++// Convert packed signed 32-bit integers in a to packed double-precision
++// (64-bit) floating-point elements, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtpi32_pd
++FORCE_INLINE __m128d _mm_cvtpi32_pd(__m64 a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vcvtq_f64_s64(vmovl_s32(vreinterpret_s32_m64(a))));
++#else
++    double a0 = (double) vget_lane_s32(vreinterpret_s32_m64(a), 0);
++    double a1 = (double) vget_lane_s32(vreinterpret_s32_m64(a), 1);
++    return _mm_set_pd(a1, a0);
++#endif
++}
++
++// Convert packed single-precision (32-bit) floating-point elements in a to
++// packed 32-bit integers, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtps_epi32
++// *NOTE*. The default rounding mode on SSE is 'round to even', which ARMv7-A
++// does not support! It is supported on ARMv8-A however.
++FORCE_INLINE __m128i _mm_cvtps_epi32(__m128 a)
++{
++#if defined(__ARM_FEATURE_FRINT)
++    return vreinterpretq_m128i_s32(vcvtq_s32_f32(vrnd32xq_f32(a)));
++#elif (defined(__aarch64__) || defined(_M_ARM64)) || \
++    defined(__ARM_FEATURE_DIRECTED_ROUNDING)
++    switch (_MM_GET_ROUNDING_MODE()) {
++    case _MM_ROUND_NEAREST:
++        return vreinterpretq_m128i_s32(vcvtnq_s32_f32(a));
++    case _MM_ROUND_DOWN:
++        return vreinterpretq_m128i_s32(vcvtmq_s32_f32(a));
++    case _MM_ROUND_UP:
++        return vreinterpretq_m128i_s32(vcvtpq_s32_f32(a));
++    default:  // _MM_ROUND_TOWARD_ZERO
++        return vreinterpretq_m128i_s32(vcvtq_s32_f32(a));
++    }
++#else
++    float *f = (float *) &a;
++    switch (_MM_GET_ROUNDING_MODE()) {
++    case _MM_ROUND_NEAREST: {
++        uint32x4_t signmask = vdupq_n_u32(0x80000000);
++        float32x4_t half = vbslq_f32(signmask, vreinterpretq_f32_m128(a),
++                                     vdupq_n_f32(0.5f)); /* +/- 0.5 */
++        int32x4_t r_normal = vcvtq_s32_f32(vaddq_f32(
++            vreinterpretq_f32_m128(a), half)); /* round to integer: [a + 0.5]*/
++        int32x4_t r_trunc = vcvtq_s32_f32(
++            vreinterpretq_f32_m128(a)); /* truncate to integer: [a] */
++        int32x4_t plusone = vreinterpretq_s32_u32(vshrq_n_u32(
++            vreinterpretq_u32_s32(vnegq_s32(r_trunc)), 31)); /* 1 or 0 */
++        int32x4_t r_even = vbicq_s32(vaddq_s32(r_trunc, plusone),
++                                     vdupq_n_s32(1)); /* ([a] + {0,1}) & ~1 */
++        float32x4_t delta = vsubq_f32(
++            vreinterpretq_f32_m128(a),
++            vcvtq_f32_s32(r_trunc)); /* compute delta: delta = (a - [a]) */
++        uint32x4_t is_delta_half =
++            vceqq_f32(delta, half); /* delta == +/- 0.5 */
++        return vreinterpretq_m128i_s32(
++            vbslq_s32(is_delta_half, r_even, r_normal));
++    }
++    case _MM_ROUND_DOWN:
++        return _mm_set_epi32(floorf(f[3]), floorf(f[2]), floorf(f[1]),
++                             floorf(f[0]));
++    case _MM_ROUND_UP:
++        return _mm_set_epi32(ceilf(f[3]), ceilf(f[2]), ceilf(f[1]),
++                             ceilf(f[0]));
++    default:  // _MM_ROUND_TOWARD_ZERO
++        return _mm_set_epi32((int32_t) f[3], (int32_t) f[2], (int32_t) f[1],
++                             (int32_t) f[0]);
++    }
++#endif
++}
++
++// Convert packed single-precision (32-bit) floating-point elements in a to
++// packed double-precision (64-bit) floating-point elements, and store the
++// results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtps_pd
++FORCE_INLINE __m128d _mm_cvtps_pd(__m128 a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vcvt_f64_f32(vget_low_f32(vreinterpretq_f32_m128(a))));
++#else
++    double a0 = (double) vgetq_lane_f32(vreinterpretq_f32_m128(a), 0);
++    double a1 = (double) vgetq_lane_f32(vreinterpretq_f32_m128(a), 1);
++    return _mm_set_pd(a1, a0);
++#endif
++}
++
++// Copy the lower double-precision (64-bit) floating-point element of a to dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsd_f64
++FORCE_INLINE double _mm_cvtsd_f64(__m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return (double) vgetq_lane_f64(vreinterpretq_f64_m128d(a), 0);
++#else
++    return ((double *) &a)[0];
++#endif
++}
++
++// Convert the lower double-precision (64-bit) floating-point element in a to a
++// 32-bit integer, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsd_si32
++FORCE_INLINE int32_t _mm_cvtsd_si32(__m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return (int32_t) vgetq_lane_f64(vrndiq_f64(vreinterpretq_f64_m128d(a)), 0);
++#else
++    __m128d rnd = _mm_round_pd(a, _MM_FROUND_CUR_DIRECTION);
++    double ret = ((double *) &rnd)[0];
++    return (int32_t) ret;
++#endif
++}
++
++// Convert the lower double-precision (64-bit) floating-point element in a to a
++// 64-bit integer, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsd_si64
++FORCE_INLINE int64_t _mm_cvtsd_si64(__m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return (int64_t) vgetq_lane_f64(vrndiq_f64(vreinterpretq_f64_m128d(a)), 0);
++#else
++    __m128d rnd = _mm_round_pd(a, _MM_FROUND_CUR_DIRECTION);
++    double ret = ((double *) &rnd)[0];
++    return (int64_t) ret;
++#endif
++}
++
++// Convert the lower double-precision (64-bit) floating-point element in a to a
++// 64-bit integer, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsd_si64x
++#define _mm_cvtsd_si64x _mm_cvtsd_si64
++
++// Convert the lower double-precision (64-bit) floating-point element in b to a
++// single-precision (32-bit) floating-point element, store the result in the
++// lower element of dst, and copy the upper 3 packed elements from a to the
++// upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsd_ss
++FORCE_INLINE __m128 _mm_cvtsd_ss(__m128 a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128_f32(vsetq_lane_f32(
++        vget_lane_f32(vcvt_f32_f64(vreinterpretq_f64_m128d(b)), 0),
++        vreinterpretq_f32_m128(a), 0));
++#else
++    return vreinterpretq_m128_f32(vsetq_lane_f32((float) ((double *) &b)[0],
++                                                 vreinterpretq_f32_m128(a), 0));
++#endif
++}
++
++// Copy the lower 32-bit integer in a to dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsi128_si32
++FORCE_INLINE int _mm_cvtsi128_si32(__m128i a)
++{
++    return vgetq_lane_s32(vreinterpretq_s32_m128i(a), 0);
++}
++
++// Copy the lower 64-bit integer in a to dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsi128_si64
++FORCE_INLINE int64_t _mm_cvtsi128_si64(__m128i a)
++{
++    return vgetq_lane_s64(vreinterpretq_s64_m128i(a), 0);
++}
++
++// Copy the lower 64-bit integer in a to dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsi128_si64x
++#define _mm_cvtsi128_si64x(a) _mm_cvtsi128_si64(a)
++
++// Convert the signed 32-bit integer b to a double-precision (64-bit)
++// floating-point element, store the result in the lower element of dst, and
++// copy the upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsi32_sd
++FORCE_INLINE __m128d _mm_cvtsi32_sd(__m128d a, int32_t b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vsetq_lane_f64((double) b, vreinterpretq_f64_m128d(a), 0));
++#else
++    double bf = (double) b;
++    return vreinterpretq_m128d_s64(
++        vsetq_lane_s64(*(int64_t *) &bf, vreinterpretq_s64_m128d(a), 0));
++#endif
++}
++
++// Copy the lower 64-bit integer in a to dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsi128_si64x
++#define _mm_cvtsi128_si64x(a) _mm_cvtsi128_si64(a)
++
++// Copy 32-bit integer a to the lower elements of dst, and zero the upper
++// elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsi32_si128
++FORCE_INLINE __m128i _mm_cvtsi32_si128(int a)
++{
++    return vreinterpretq_m128i_s32(vsetq_lane_s32(a, vdupq_n_s32(0), 0));
++}
++
++// Convert the signed 64-bit integer b to a double-precision (64-bit)
++// floating-point element, store the result in the lower element of dst, and
++// copy the upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsi64_sd
++FORCE_INLINE __m128d _mm_cvtsi64_sd(__m128d a, int64_t b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vsetq_lane_f64((double) b, vreinterpretq_f64_m128d(a), 0));
++#else
++    double bf = (double) b;
++    return vreinterpretq_m128d_s64(
++        vsetq_lane_s64(*(int64_t *) &bf, vreinterpretq_s64_m128d(a), 0));
++#endif
++}
++
++// Copy 64-bit integer a to the lower element of dst, and zero the upper
++// element.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsi64_si128
++FORCE_INLINE __m128i _mm_cvtsi64_si128(int64_t a)
++{
++    return vreinterpretq_m128i_s64(vsetq_lane_s64(a, vdupq_n_s64(0), 0));
++}
++
++// Copy 64-bit integer a to the lower element of dst, and zero the upper
++// element.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsi64x_si128
++#define _mm_cvtsi64x_si128(a) _mm_cvtsi64_si128(a)
++
++// Convert the signed 64-bit integer b to a double-precision (64-bit)
++// floating-point element, store the result in the lower element of dst, and
++// copy the upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsi64x_sd
++#define _mm_cvtsi64x_sd(a, b) _mm_cvtsi64_sd(a, b)
++
++// Convert the lower single-precision (32-bit) floating-point element in b to a
++// double-precision (64-bit) floating-point element, store the result in the
++// lower element of dst, and copy the upper element from a to the upper element
++// of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtss_sd
++FORCE_INLINE __m128d _mm_cvtss_sd(__m128d a, __m128 b)
++{
++    double d = (double) vgetq_lane_f32(vreinterpretq_f32_m128(b), 0);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vsetq_lane_f64(d, vreinterpretq_f64_m128d(a), 0));
++#else
++    return vreinterpretq_m128d_s64(
++        vsetq_lane_s64(*(int64_t *) &d, vreinterpretq_s64_m128d(a), 0));
++#endif
++}
++
++// Convert packed double-precision (64-bit) floating-point elements in a to
++// packed 32-bit integers with truncation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvttpd_epi32
++FORCE_INLINE __m128i _mm_cvttpd_epi32(__m128d a)
++{
++    double a0 = ((double *) &a)[0];
++    double a1 = ((double *) &a)[1];
++    return _mm_set_epi32(0, 0, (int32_t) a1, (int32_t) a0);
++}
++
++// Convert packed double-precision (64-bit) floating-point elements in a to
++// packed 32-bit integers with truncation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvttpd_pi32
++FORCE_INLINE __m64 _mm_cvttpd_pi32(__m128d a)
++{
++    double a0 = ((double *) &a)[0];
++    double a1 = ((double *) &a)[1];
++    int32_t ALIGN_STRUCT(16) data[2] = {(int32_t) a0, (int32_t) a1};
++    return vreinterpret_m64_s32(vld1_s32(data));
++}
++
++// Convert packed single-precision (32-bit) floating-point elements in a to
++// packed 32-bit integers with truncation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvttps_epi32
++FORCE_INLINE __m128i _mm_cvttps_epi32(__m128 a)
++{
++    return vreinterpretq_m128i_s32(vcvtq_s32_f32(vreinterpretq_f32_m128(a)));
++}
++
++// Convert the lower double-precision (64-bit) floating-point element in a to a
++// 32-bit integer with truncation, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvttsd_si32
++FORCE_INLINE int32_t _mm_cvttsd_si32(__m128d a)
++{
++    double ret = *((double *) &a);
++    return (int32_t) ret;
++}
++
++// Convert the lower double-precision (64-bit) floating-point element in a to a
++// 64-bit integer with truncation, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvttsd_si64
++FORCE_INLINE int64_t _mm_cvttsd_si64(__m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vgetq_lane_s64(vcvtq_s64_f64(vreinterpretq_f64_m128d(a)), 0);
++#else
++    double ret = *((double *) &a);
++    return (int64_t) ret;
++#endif
++}
++
++// Convert the lower double-precision (64-bit) floating-point element in a to a
++// 64-bit integer with truncation, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvttsd_si64x
++#define _mm_cvttsd_si64x(a) _mm_cvttsd_si64(a)
++
++// Divide packed double-precision (64-bit) floating-point elements in a by
++// packed elements in b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_div_pd
++FORCE_INLINE __m128d _mm_div_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vdivq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#else
++    double *da = (double *) &a;
++    double *db = (double *) &b;
++    double c[2];
++    c[0] = da[0] / db[0];
++    c[1] = da[1] / db[1];
++    return vld1q_f32((float32_t *) c);
++#endif
++}
++
++// Divide the lower double-precision (64-bit) floating-point element in a by the
++// lower double-precision (64-bit) floating-point element in b, store the result
++// in the lower element of dst, and copy the upper element from a to the upper
++// element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_div_sd
++FORCE_INLINE __m128d _mm_div_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    float64x2_t tmp =
++        vdivq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b));
++    return vreinterpretq_m128d_f64(
++        vsetq_lane_f64(vgetq_lane_f64(vreinterpretq_f64_m128d(a), 1), tmp, 1));
++#else
++    return _mm_move_sd(a, _mm_div_pd(a, b));
++#endif
++}
++
++// Extract a 16-bit integer from a, selected with imm8, and store the result in
++// the lower element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_extract_epi16
++// FORCE_INLINE int _mm_extract_epi16(__m128i a, __constrange(0,8) int imm)
++#define _mm_extract_epi16(a, imm) \
++    vgetq_lane_u16(vreinterpretq_u16_m128i(a), (imm))
++
++// Copy a to dst, and insert the 16-bit integer i into dst at the location
++// specified by imm8.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_insert_epi16
++// FORCE_INLINE __m128i _mm_insert_epi16(__m128i a, int b,
++//                                       __constrange(0,8) int imm)
++#define _mm_insert_epi16(a, b, imm) \
++    vreinterpretq_m128i_s16(        \
++        vsetq_lane_s16((b), vreinterpretq_s16_m128i(a), (imm)))
++
++// Load 128-bits (composed of 2 packed double-precision (64-bit) floating-point
++// elements) from memory into dst. mem_addr must be aligned on a 16-byte
++// boundary or a general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_load_pd
++FORCE_INLINE __m128d _mm_load_pd(const double *p)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(vld1q_f64(p));
++#else
++    const float *fp = (const float *) p;
++    float ALIGN_STRUCT(16) data[4] = {fp[0], fp[1], fp[2], fp[3]};
++    return vreinterpretq_m128d_f32(vld1q_f32(data));
++#endif
++}
++
++// Load a double-precision (64-bit) floating-point element from memory into both
++// elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_load_pd1
++#define _mm_load_pd1 _mm_load1_pd
++
++// Load a double-precision (64-bit) floating-point element from memory into the
++// lower of dst, and zero the upper element. mem_addr does not need to be
++// aligned on any particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_load_sd
++FORCE_INLINE __m128d _mm_load_sd(const double *p)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(vsetq_lane_f64(*p, vdupq_n_f64(0), 0));
++#else
++    const float *fp = (const float *) p;
++    float ALIGN_STRUCT(16) data[4] = {fp[0], fp[1], 0, 0};
++    return vreinterpretq_m128d_f32(vld1q_f32(data));
++#endif
++}
++
++// Load 128-bits of integer data from memory into dst. mem_addr must be aligned
++// on a 16-byte boundary or a general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_load_si128
++FORCE_INLINE __m128i _mm_load_si128(const __m128i *p)
++{
++    return vreinterpretq_m128i_s32(vld1q_s32((const int32_t *) p));
++}
++
++// Load a double-precision (64-bit) floating-point element from memory into both
++// elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_load1_pd
++FORCE_INLINE __m128d _mm_load1_pd(const double *p)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(vld1q_dup_f64(p));
++#else
++    return vreinterpretq_m128d_s64(vdupq_n_s64(*(const int64_t *) p));
++#endif
++}
++
++// Load a double-precision (64-bit) floating-point element from memory into the
++// upper element of dst, and copy the lower element from a to dst. mem_addr does
++// not need to be aligned on any particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadh_pd
++FORCE_INLINE __m128d _mm_loadh_pd(__m128d a, const double *p)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vcombine_f64(vget_low_f64(vreinterpretq_f64_m128d(a)), vld1_f64(p)));
++#else
++    return vreinterpretq_m128d_f32(vcombine_f32(
++        vget_low_f32(vreinterpretq_f32_m128d(a)), vld1_f32((const float *) p)));
++#endif
++}
++
++// Load 64-bit integer from memory into the first element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadl_epi64
++FORCE_INLINE __m128i _mm_loadl_epi64(__m128i const *p)
++{
++    /* Load the lower 64 bits of the value pointed to by p into the
++     * lower 64 bits of the result, zeroing the upper 64 bits of the result.
++     */
++    return vreinterpretq_m128i_s32(
++        vcombine_s32(vld1_s32((int32_t const *) p), vcreate_s32(0)));
++}
++
++// Load a double-precision (64-bit) floating-point element from memory into the
++// lower element of dst, and copy the upper element from a to dst. mem_addr does
++// not need to be aligned on any particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadl_pd
++FORCE_INLINE __m128d _mm_loadl_pd(__m128d a, const double *p)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vcombine_f64(vld1_f64(p), vget_high_f64(vreinterpretq_f64_m128d(a))));
++#else
++    return vreinterpretq_m128d_f32(
++        vcombine_f32(vld1_f32((const float *) p),
++                     vget_high_f32(vreinterpretq_f32_m128d(a))));
++#endif
++}
++
++// Load 2 double-precision (64-bit) floating-point elements from memory into dst
++// in reverse order. mem_addr must be aligned on a 16-byte boundary or a
++// general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadr_pd
++FORCE_INLINE __m128d _mm_loadr_pd(const double *p)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    float64x2_t v = vld1q_f64(p);
++    return vreinterpretq_m128d_f64(vextq_f64(v, v, 1));
++#else
++    int64x2_t v = vld1q_s64((const int64_t *) p);
++    return vreinterpretq_m128d_s64(vextq_s64(v, v, 1));
++#endif
++}
++
++// Loads two double-precision from unaligned memory, floating-point values.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadu_pd
++FORCE_INLINE __m128d _mm_loadu_pd(const double *p)
++{
++    return _mm_load_pd(p);
++}
++
++// Load 128-bits of integer data from memory into dst. mem_addr does not need to
++// be aligned on any particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadu_si128
++FORCE_INLINE __m128i _mm_loadu_si128(const __m128i *p)
++{
++    return vreinterpretq_m128i_s32(vld1q_s32((const int32_t *) p));
++}
++
++// Load unaligned 32-bit integer from memory into the first element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadu_si32
++FORCE_INLINE __m128i _mm_loadu_si32(const void *p)
++{
++    return vreinterpretq_m128i_s32(
++        vsetq_lane_s32(*(const int32_t *) p, vdupq_n_s32(0), 0));
++}
++
++// Multiply packed signed 16-bit integers in a and b, producing intermediate
++// signed 32-bit integers. Horizontally add adjacent pairs of intermediate
++// 32-bit integers, and pack the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_madd_epi16
++FORCE_INLINE __m128i _mm_madd_epi16(__m128i a, __m128i b)
++{
++    int32x4_t low = vmull_s16(vget_low_s16(vreinterpretq_s16_m128i(a)),
++                              vget_low_s16(vreinterpretq_s16_m128i(b)));
++#if defined(__aarch64__) || defined(_M_ARM64)
++    int32x4_t high =
++        vmull_high_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b));
++
++    return vreinterpretq_m128i_s32(vpaddq_s32(low, high));
++#else
++    int32x4_t high = vmull_s16(vget_high_s16(vreinterpretq_s16_m128i(a)),
++                               vget_high_s16(vreinterpretq_s16_m128i(b)));
++
++    int32x2_t low_sum = vpadd_s32(vget_low_s32(low), vget_high_s32(low));
++    int32x2_t high_sum = vpadd_s32(vget_low_s32(high), vget_high_s32(high));
++
++    return vreinterpretq_m128i_s32(vcombine_s32(low_sum, high_sum));
++#endif
++}
++
++// Conditionally store 8-bit integer elements from a into memory using mask
++// (elements are not stored when the highest bit is not set in the corresponding
++// element) and a non-temporal memory hint. mem_addr does not need to be aligned
++// on any particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_maskmoveu_si128
++FORCE_INLINE void _mm_maskmoveu_si128(__m128i a, __m128i mask, char *mem_addr)
++{
++    int8x16_t shr_mask = vshrq_n_s8(vreinterpretq_s8_m128i(mask), 7);
++    __m128 b = _mm_load_ps((const float *) mem_addr);
++    int8x16_t masked =
++        vbslq_s8(vreinterpretq_u8_s8(shr_mask), vreinterpretq_s8_m128i(a),
++                 vreinterpretq_s8_m128(b));
++    vst1q_s8((int8_t *) mem_addr, masked);
++}
++
++// Compare packed signed 16-bit integers in a and b, and store packed maximum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_epi16
++FORCE_INLINE __m128i _mm_max_epi16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s16(
++        vmaxq_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b)));
++}
++
++// Compare packed unsigned 8-bit integers in a and b, and store packed maximum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_epu8
++FORCE_INLINE __m128i _mm_max_epu8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u8(
++        vmaxq_u8(vreinterpretq_u8_m128i(a), vreinterpretq_u8_m128i(b)));
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b,
++// and store packed maximum values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_pd
++FORCE_INLINE __m128d _mm_max_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++#if SSE2NEON_PRECISE_MINMAX
++    float64x2_t _a = vreinterpretq_f64_m128d(a);
++    float64x2_t _b = vreinterpretq_f64_m128d(b);
++    return vreinterpretq_m128d_f64(vbslq_f64(vcgtq_f64(_a, _b), _a, _b));
++#else
++    return vreinterpretq_m128d_f64(
++        vmaxq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#endif
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t b1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] = (*(double *) &a0) > (*(double *) &b0) ? a0 : b0;
++    d[1] = (*(double *) &a1) > (*(double *) &b1) ? a1 : b1;
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b, store the maximum value in the lower element of dst, and copy the upper
++// element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_sd
++FORCE_INLINE __m128d _mm_max_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return _mm_move_sd(a, _mm_max_pd(a, b));
++#else
++    double *da = (double *) &a;
++    double *db = (double *) &b;
++    double c[2] = {da[0] > db[0] ? da[0] : db[0], da[1]};
++    return vreinterpretq_m128d_f32(vld1q_f32((float32_t *) c));
++#endif
++}
++
++// Compare packed signed 16-bit integers in a and b, and store packed minimum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_min_epi16
++FORCE_INLINE __m128i _mm_min_epi16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s16(
++        vminq_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b)));
++}
++
++// Compare packed unsigned 8-bit integers in a and b, and store packed minimum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_min_epu8
++FORCE_INLINE __m128i _mm_min_epu8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u8(
++        vminq_u8(vreinterpretq_u8_m128i(a), vreinterpretq_u8_m128i(b)));
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b,
++// and store packed minimum values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_min_pd
++FORCE_INLINE __m128d _mm_min_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++#if SSE2NEON_PRECISE_MINMAX
++    float64x2_t _a = vreinterpretq_f64_m128d(a);
++    float64x2_t _b = vreinterpretq_f64_m128d(b);
++    return vreinterpretq_m128d_f64(vbslq_f64(vcltq_f64(_a, _b), _a, _b));
++#else
++    return vreinterpretq_m128d_f64(
++        vminq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#endif
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t b1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] = (*(double *) &a0) < (*(double *) &b0) ? a0 : b0;
++    d[1] = (*(double *) &a1) < (*(double *) &b1) ? a1 : b1;
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b, store the minimum value in the lower element of dst, and copy the upper
++// element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_min_sd
++FORCE_INLINE __m128d _mm_min_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return _mm_move_sd(a, _mm_min_pd(a, b));
++#else
++    double *da = (double *) &a;
++    double *db = (double *) &b;
++    double c[2] = {da[0] < db[0] ? da[0] : db[0], da[1]};
++    return vreinterpretq_m128d_f32(vld1q_f32((float32_t *) c));
++#endif
++}
++
++// Copy the lower 64-bit integer in a to the lower element of dst, and zero the
++// upper element.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_move_epi64
++FORCE_INLINE __m128i _mm_move_epi64(__m128i a)
++{
++    return vreinterpretq_m128i_s64(
++        vsetq_lane_s64(0, vreinterpretq_s64_m128i(a), 1));
++}
++
++// Move the lower double-precision (64-bit) floating-point element from b to the
++// lower element of dst, and copy the upper element from a to the upper element
++// of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_move_sd
++FORCE_INLINE __m128d _mm_move_sd(__m128d a, __m128d b)
++{
++    return vreinterpretq_m128d_f32(
++        vcombine_f32(vget_low_f32(vreinterpretq_f32_m128d(b)),
++                     vget_high_f32(vreinterpretq_f32_m128d(a))));
++}
++
++// Create mask from the most significant bit of each 8-bit element in a, and
++// store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_movemask_epi8
++FORCE_INLINE int _mm_movemask_epi8(__m128i a)
++{
++    // Use increasingly wide shifts+adds to collect the sign bits
++    // together.
++    // Since the widening shifts would be rather confusing to follow in little
++    // endian, everything will be illustrated in big endian order instead. This
++    // has a different result - the bits would actually be reversed on a big
++    // endian machine.
++
++    // Starting input (only half the elements are shown):
++    // 89 ff 1d c0 00 10 99 33
++    uint8x16_t input = vreinterpretq_u8_m128i(a);
++
++    // Shift out everything but the sign bits with an unsigned shift right.
++    //
++    // Bytes of the vector::
++    // 89 ff 1d c0 00 10 99 33
++    // \  \  \  \  \  \  \  \    high_bits = (uint16x4_t)(input >> 7)
++    //  |  |  |  |  |  |  |  |
++    // 01 01 00 01 00 00 01 00
++    //
++    // Bits of first important lane(s):
++    // 10001001 (89)
++    // \______
++    //        |
++    // 00000001 (01)
++    uint16x8_t high_bits = vreinterpretq_u16_u8(vshrq_n_u8(input, 7));
++
++    // Merge the even lanes together with a 16-bit unsigned shift right + add.
++    // 'xx' represents garbage data which will be ignored in the final result.
++    // In the important bytes, the add functions like a binary OR.
++    //
++    // 01 01 00 01 00 00 01 00
++    //  \_ |  \_ |  \_ |  \_ |   paired16 = (uint32x4_t)(input + (input >> 7))
++    //    \|    \|    \|    \|
++    // xx 03 xx 01 xx 00 xx 02
++    //
++    // 00000001 00000001 (01 01)
++    //        \_______ |
++    //                \|
++    // xxxxxxxx xxxxxx11 (xx 03)
++    uint32x4_t paired16 =
++        vreinterpretq_u32_u16(vsraq_n_u16(high_bits, high_bits, 7));
++
++    // Repeat with a wider 32-bit shift + add.
++    // xx 03 xx 01 xx 00 xx 02
++    //     \____ |     \____ |  paired32 = (uint64x1_t)(paired16 + (paired16 >>
++    //     14))
++    //          \|          \|
++    // xx xx xx 0d xx xx xx 02
++    //
++    // 00000011 00000001 (03 01)
++    //        \\_____ ||
++    //         '----.\||
++    // xxxxxxxx xxxx1101 (xx 0d)
++    uint64x2_t paired32 =
++        vreinterpretq_u64_u32(vsraq_n_u32(paired16, paired16, 14));
++
++    // Last, an even wider 64-bit shift + add to get our result in the low 8 bit
++    // lanes. xx xx xx 0d xx xx xx 02
++    //            \_________ |   paired64 = (uint8x8_t)(paired32 + (paired32 >>
++    //            28))
++    //                      \|
++    // xx xx xx xx xx xx xx d2
++    //
++    // 00001101 00000010 (0d 02)
++    //     \   \___ |  |
++    //      '---.  \|  |
++    // xxxxxxxx 11010010 (xx d2)
++    uint8x16_t paired64 =
++        vreinterpretq_u8_u64(vsraq_n_u64(paired32, paired32, 28));
++
++    // Extract the low 8 bits from each 64-bit lane with 2 8-bit extracts.
++    // xx xx xx xx xx xx xx d2
++    //                      ||  return paired64[0]
++    //                      d2
++    // Note: Little endian would return the correct value 4b (01001011) instead.
++    return vgetq_lane_u8(paired64, 0) | ((int) vgetq_lane_u8(paired64, 8) << 8);
++}
++
++// Set each bit of mask dst based on the most significant bit of the
++// corresponding packed double-precision (64-bit) floating-point element in a.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_movemask_pd
++FORCE_INLINE int _mm_movemask_pd(__m128d a)
++{
++    uint64x2_t input = vreinterpretq_u64_m128d(a);
++    uint64x2_t high_bits = vshrq_n_u64(input, 63);
++    return (int) (vgetq_lane_u64(high_bits, 0) |
++                  (vgetq_lane_u64(high_bits, 1) << 1));
++}
++
++// Copy the lower 64-bit integer in a to dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_movepi64_pi64
++FORCE_INLINE __m64 _mm_movepi64_pi64(__m128i a)
++{
++    return vreinterpret_m64_s64(vget_low_s64(vreinterpretq_s64_m128i(a)));
++}
++
++// Copy the 64-bit integer a to the lower element of dst, and zero the upper
++// element.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_movpi64_epi64
++FORCE_INLINE __m128i _mm_movpi64_epi64(__m64 a)
++{
++    return vreinterpretq_m128i_s64(
++        vcombine_s64(vreinterpret_s64_m64(a), vdup_n_s64(0)));
++}
++
++// Multiply the low unsigned 32-bit integers from each packed 64-bit element in
++// a and b, and store the unsigned 64-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mul_epu32
++FORCE_INLINE __m128i _mm_mul_epu32(__m128i a, __m128i b)
++{
++    // vmull_u32 upcasts instead of masking, so we downcast.
++    uint32x2_t a_lo = vmovn_u64(vreinterpretq_u64_m128i(a));
++    uint32x2_t b_lo = vmovn_u64(vreinterpretq_u64_m128i(b));
++    return vreinterpretq_m128i_u64(vmull_u32(a_lo, b_lo));
++}
++
++// Multiply packed double-precision (64-bit) floating-point elements in a and b,
++// and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mul_pd
++FORCE_INLINE __m128d _mm_mul_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vmulq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#else
++    double *da = (double *) &a;
++    double *db = (double *) &b;
++    double c[2];
++    c[0] = da[0] * db[0];
++    c[1] = da[1] * db[1];
++    return vld1q_f32((float32_t *) c);
++#endif
++}
++
++// Multiply the lower double-precision (64-bit) floating-point element in a and
++// b, store the result in the lower element of dst, and copy the upper element
++// from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=mm_mul_sd
++FORCE_INLINE __m128d _mm_mul_sd(__m128d a, __m128d b)
++{
++    return _mm_move_sd(a, _mm_mul_pd(a, b));
++}
++
++// Multiply the low unsigned 32-bit integers from a and b, and store the
++// unsigned 64-bit result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mul_su32
++FORCE_INLINE __m64 _mm_mul_su32(__m64 a, __m64 b)
++{
++    return vreinterpret_m64_u64(vget_low_u64(
++        vmull_u32(vreinterpret_u32_m64(a), vreinterpret_u32_m64(b))));
++}
++
++// Multiply the packed signed 16-bit integers in a and b, producing intermediate
++// 32-bit integers, and store the high 16 bits of the intermediate integers in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mulhi_epi16
++FORCE_INLINE __m128i _mm_mulhi_epi16(__m128i a, __m128i b)
++{
++    /* FIXME: issue with large values because of result saturation */
++    // int16x8_t ret = vqdmulhq_s16(vreinterpretq_s16_m128i(a),
++    // vreinterpretq_s16_m128i(b)); /* =2*a*b */ return
++    // vreinterpretq_m128i_s16(vshrq_n_s16(ret, 1));
++    int16x4_t a3210 = vget_low_s16(vreinterpretq_s16_m128i(a));
++    int16x4_t b3210 = vget_low_s16(vreinterpretq_s16_m128i(b));
++    int32x4_t ab3210 = vmull_s16(a3210, b3210); /* 3333222211110000 */
++    int16x4_t a7654 = vget_high_s16(vreinterpretq_s16_m128i(a));
++    int16x4_t b7654 = vget_high_s16(vreinterpretq_s16_m128i(b));
++    int32x4_t ab7654 = vmull_s16(a7654, b7654); /* 7777666655554444 */
++    uint16x8x2_t r =
++        vuzpq_u16(vreinterpretq_u16_s32(ab3210), vreinterpretq_u16_s32(ab7654));
++    return vreinterpretq_m128i_u16(r.val[1]);
++}
++
++// Multiply the packed unsigned 16-bit integers in a and b, producing
++// intermediate 32-bit integers, and store the high 16 bits of the intermediate
++// integers in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mulhi_epu16
++FORCE_INLINE __m128i _mm_mulhi_epu16(__m128i a, __m128i b)
++{
++    uint16x4_t a3210 = vget_low_u16(vreinterpretq_u16_m128i(a));
++    uint16x4_t b3210 = vget_low_u16(vreinterpretq_u16_m128i(b));
++    uint32x4_t ab3210 = vmull_u16(a3210, b3210);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    uint32x4_t ab7654 =
++        vmull_high_u16(vreinterpretq_u16_m128i(a), vreinterpretq_u16_m128i(b));
++    uint16x8_t r = vuzp2q_u16(vreinterpretq_u16_u32(ab3210),
++                              vreinterpretq_u16_u32(ab7654));
++    return vreinterpretq_m128i_u16(r);
++#else
++    uint16x4_t a7654 = vget_high_u16(vreinterpretq_u16_m128i(a));
++    uint16x4_t b7654 = vget_high_u16(vreinterpretq_u16_m128i(b));
++    uint32x4_t ab7654 = vmull_u16(a7654, b7654);
++    uint16x8x2_t r =
++        vuzpq_u16(vreinterpretq_u16_u32(ab3210), vreinterpretq_u16_u32(ab7654));
++    return vreinterpretq_m128i_u16(r.val[1]);
++#endif
++}
++
++// Multiply the packed 16-bit integers in a and b, producing intermediate 32-bit
++// integers, and store the low 16 bits of the intermediate integers in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mullo_epi16
++FORCE_INLINE __m128i _mm_mullo_epi16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s16(
++        vmulq_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b)));
++}
++
++// Compute the bitwise OR of packed double-precision (64-bit) floating-point
++// elements in a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=mm_or_pd
++FORCE_INLINE __m128d _mm_or_pd(__m128d a, __m128d b)
++{
++    return vreinterpretq_m128d_s64(
++        vorrq_s64(vreinterpretq_s64_m128d(a), vreinterpretq_s64_m128d(b)));
++}
++
++// Compute the bitwise OR of 128 bits (representing integer data) in a and b,
++// and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_or_si128
++FORCE_INLINE __m128i _mm_or_si128(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s32(
++        vorrq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++}
++
++// Convert packed signed 16-bit integers from a and b to packed 8-bit integers
++// using signed saturation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_packs_epi16
++FORCE_INLINE __m128i _mm_packs_epi16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s8(
++        vcombine_s8(vqmovn_s16(vreinterpretq_s16_m128i(a)),
++                    vqmovn_s16(vreinterpretq_s16_m128i(b))));
++}
++
++// Convert packed signed 32-bit integers from a and b to packed 16-bit integers
++// using signed saturation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_packs_epi32
++FORCE_INLINE __m128i _mm_packs_epi32(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s16(
++        vcombine_s16(vqmovn_s32(vreinterpretq_s32_m128i(a)),
++                     vqmovn_s32(vreinterpretq_s32_m128i(b))));
++}
++
++// Convert packed signed 16-bit integers from a and b to packed 8-bit integers
++// using unsigned saturation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_packus_epi16
++FORCE_INLINE __m128i _mm_packus_epi16(const __m128i a, const __m128i b)
++{
++    return vreinterpretq_m128i_u8(
++        vcombine_u8(vqmovun_s16(vreinterpretq_s16_m128i(a)),
++                    vqmovun_s16(vreinterpretq_s16_m128i(b))));
++}
++
++// Pause the processor. This is typically used in spin-wait loops and depending
++// on the x86 processor typical values are in the 40-100 cycle range. The
++// 'yield' instruction isn't a good fit because it's effectively a nop on most
++// Arm cores. Experience with several databases has shown has shown an 'isb' is
++// a reasonable approximation.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_pause
++FORCE_INLINE void _mm_pause(void)
++{
++#if defined(_MSC_VER)
++    __isb(_ARM64_BARRIER_SY);
++#else
++    __asm__ __volatile__("isb\n");
++#endif
++}
++
++// Compute the absolute differences of packed unsigned 8-bit integers in a and
++// b, then horizontally sum each consecutive 8 differences to produce two
++// unsigned 16-bit integers, and pack these unsigned 16-bit integers in the low
++// 16 bits of 64-bit elements in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sad_epu8
++FORCE_INLINE __m128i _mm_sad_epu8(__m128i a, __m128i b)
++{
++    uint16x8_t t = vpaddlq_u8(vabdq_u8((uint8x16_t) a, (uint8x16_t) b));
++    return vreinterpretq_m128i_u64(vpaddlq_u32(vpaddlq_u16(t)));
++}
++
++// Set packed 16-bit integers in dst with the supplied values.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set_epi16
++FORCE_INLINE __m128i _mm_set_epi16(short i7,
++                                   short i6,
++                                   short i5,
++                                   short i4,
++                                   short i3,
++                                   short i2,
++                                   short i1,
++                                   short i0)
++{
++    int16_t ALIGN_STRUCT(16) data[8] = {i0, i1, i2, i3, i4, i5, i6, i7};
++    return vreinterpretq_m128i_s16(vld1q_s16(data));
++}
++
++// Set packed 32-bit integers in dst with the supplied values.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set_epi32
++FORCE_INLINE __m128i _mm_set_epi32(int i3, int i2, int i1, int i0)
++{
++    int32_t ALIGN_STRUCT(16) data[4] = {i0, i1, i2, i3};
++    return vreinterpretq_m128i_s32(vld1q_s32(data));
++}
++
++// Set packed 64-bit integers in dst with the supplied values.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set_epi64
++FORCE_INLINE __m128i _mm_set_epi64(__m64 i1, __m64 i2)
++{
++    return _mm_set_epi64x(vget_lane_s64(i1, 0), vget_lane_s64(i2, 0));
++}
++
++// Set packed 64-bit integers in dst with the supplied values.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set_epi64x
++FORCE_INLINE __m128i _mm_set_epi64x(int64_t i1, int64_t i2)
++{
++    return vreinterpretq_m128i_s64(
++        vcombine_s64(vcreate_s64(i2), vcreate_s64(i1)));
++}
++
++// Set packed 8-bit integers in dst with the supplied values.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set_epi8
++FORCE_INLINE __m128i _mm_set_epi8(signed char b15,
++                                  signed char b14,
++                                  signed char b13,
++                                  signed char b12,
++                                  signed char b11,
++                                  signed char b10,
++                                  signed char b9,
++                                  signed char b8,
++                                  signed char b7,
++                                  signed char b6,
++                                  signed char b5,
++                                  signed char b4,
++                                  signed char b3,
++                                  signed char b2,
++                                  signed char b1,
++                                  signed char b0)
++{
++    int8_t ALIGN_STRUCT(16)
++        data[16] = {(int8_t) b0,  (int8_t) b1,  (int8_t) b2,  (int8_t) b3,
++                    (int8_t) b4,  (int8_t) b5,  (int8_t) b6,  (int8_t) b7,
++                    (int8_t) b8,  (int8_t) b9,  (int8_t) b10, (int8_t) b11,
++                    (int8_t) b12, (int8_t) b13, (int8_t) b14, (int8_t) b15};
++    return (__m128i) vld1q_s8(data);
++}
++
++// Set packed double-precision (64-bit) floating-point elements in dst with the
++// supplied values.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set_pd
++FORCE_INLINE __m128d _mm_set_pd(double e1, double e0)
++{
++    double ALIGN_STRUCT(16) data[2] = {e0, e1};
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(vld1q_f64((float64_t *) data));
++#else
++    return vreinterpretq_m128d_f32(vld1q_f32((float32_t *) data));
++#endif
++}
++
++// Broadcast double-precision (64-bit) floating-point value a to all elements of
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set_pd1
++#define _mm_set_pd1 _mm_set1_pd
++
++// Copy double-precision (64-bit) floating-point element a to the lower element
++// of dst, and zero the upper element.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set_sd
++FORCE_INLINE __m128d _mm_set_sd(double a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(vsetq_lane_f64(a, vdupq_n_f64(0), 0));
++#else
++    return _mm_set_pd(0, a);
++#endif
++}
++
++// Broadcast 16-bit integer a to all elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set1_epi16
++FORCE_INLINE __m128i _mm_set1_epi16(short w)
++{
++    return vreinterpretq_m128i_s16(vdupq_n_s16(w));
++}
++
++// Broadcast 32-bit integer a to all elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set1_epi32
++FORCE_INLINE __m128i _mm_set1_epi32(int _i)
++{
++    return vreinterpretq_m128i_s32(vdupq_n_s32(_i));
++}
++
++// Broadcast 64-bit integer a to all elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set1_epi64
++FORCE_INLINE __m128i _mm_set1_epi64(__m64 _i)
++{
++    return vreinterpretq_m128i_s64(vdupq_lane_s64(_i, 0));
++}
++
++// Broadcast 64-bit integer a to all elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set1_epi64x
++FORCE_INLINE __m128i _mm_set1_epi64x(int64_t _i)
++{
++    return vreinterpretq_m128i_s64(vdupq_n_s64(_i));
++}
++
++// Broadcast 8-bit integer a to all elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set1_epi8
++FORCE_INLINE __m128i _mm_set1_epi8(signed char w)
++{
++    return vreinterpretq_m128i_s8(vdupq_n_s8(w));
++}
++
++// Broadcast double-precision (64-bit) floating-point value a to all elements of
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set1_pd
++FORCE_INLINE __m128d _mm_set1_pd(double d)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(vdupq_n_f64(d));
++#else
++    return vreinterpretq_m128d_s64(vdupq_n_s64(*(int64_t *) &d));
++#endif
++}
++
++// Set packed 16-bit integers in dst with the supplied values in reverse order.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_setr_epi16
++FORCE_INLINE __m128i _mm_setr_epi16(short w0,
++                                    short w1,
++                                    short w2,
++                                    short w3,
++                                    short w4,
++                                    short w5,
++                                    short w6,
++                                    short w7)
++{
++    int16_t ALIGN_STRUCT(16) data[8] = {w0, w1, w2, w3, w4, w5, w6, w7};
++    return vreinterpretq_m128i_s16(vld1q_s16((int16_t *) data));
++}
++
++// Set packed 32-bit integers in dst with the supplied values in reverse order.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_setr_epi32
++FORCE_INLINE __m128i _mm_setr_epi32(int i3, int i2, int i1, int i0)
++{
++    int32_t ALIGN_STRUCT(16) data[4] = {i3, i2, i1, i0};
++    return vreinterpretq_m128i_s32(vld1q_s32(data));
++}
++
++// Set packed 64-bit integers in dst with the supplied values in reverse order.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_setr_epi64
++FORCE_INLINE __m128i _mm_setr_epi64(__m64 e1, __m64 e0)
++{
++    return vreinterpretq_m128i_s64(vcombine_s64(e1, e0));
++}
++
++// Set packed 8-bit integers in dst with the supplied values in reverse order.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_setr_epi8
++FORCE_INLINE __m128i _mm_setr_epi8(signed char b0,
++                                   signed char b1,
++                                   signed char b2,
++                                   signed char b3,
++                                   signed char b4,
++                                   signed char b5,
++                                   signed char b6,
++                                   signed char b7,
++                                   signed char b8,
++                                   signed char b9,
++                                   signed char b10,
++                                   signed char b11,
++                                   signed char b12,
++                                   signed char b13,
++                                   signed char b14,
++                                   signed char b15)
++{
++    int8_t ALIGN_STRUCT(16)
++        data[16] = {(int8_t) b0,  (int8_t) b1,  (int8_t) b2,  (int8_t) b3,
++                    (int8_t) b4,  (int8_t) b5,  (int8_t) b6,  (int8_t) b7,
++                    (int8_t) b8,  (int8_t) b9,  (int8_t) b10, (int8_t) b11,
++                    (int8_t) b12, (int8_t) b13, (int8_t) b14, (int8_t) b15};
++    return (__m128i) vld1q_s8(data);
++}
++
++// Set packed double-precision (64-bit) floating-point elements in dst with the
++// supplied values in reverse order.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_setr_pd
++FORCE_INLINE __m128d _mm_setr_pd(double e1, double e0)
++{
++    return _mm_set_pd(e0, e1);
++}
++
++// Return vector of type __m128d with all elements set to zero.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_setzero_pd
++FORCE_INLINE __m128d _mm_setzero_pd(void)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(vdupq_n_f64(0));
++#else
++    return vreinterpretq_m128d_f32(vdupq_n_f32(0));
++#endif
++}
++
++// Return vector of type __m128i with all elements set to zero.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_setzero_si128
++FORCE_INLINE __m128i _mm_setzero_si128(void)
++{
++    return vreinterpretq_m128i_s32(vdupq_n_s32(0));
++}
++
++// Shuffle 32-bit integers in a using the control in imm8, and store the results
++// in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_shuffle_epi32
++// FORCE_INLINE __m128i _mm_shuffle_epi32(__m128i a,
++//                                        __constrange(0,255) int imm)
++#if defined(_sse2neon_shuffle)
++#define _mm_shuffle_epi32(a, imm)                                            \
++    __extension__({                                                          \
++        int32x4_t _input = vreinterpretq_s32_m128i(a);                       \
++        int32x4_t _shuf =                                                    \
++            vshuffleq_s32(_input, _input, (imm) & (0x3), ((imm) >> 2) & 0x3, \
++                          ((imm) >> 4) & 0x3, ((imm) >> 6) & 0x3);           \
++        vreinterpretq_m128i_s32(_shuf);                                      \
++    })
++#else  // generic
++#define _mm_shuffle_epi32(a, imm)                           \
++    _sse2neon_define1(                                      \
++        __m128i, a, __m128i ret; switch (imm) {             \
++            case _MM_SHUFFLE(1, 0, 3, 2):                   \
++                ret = _mm_shuffle_epi_1032(_a);             \
++                break;                                      \
++            case _MM_SHUFFLE(2, 3, 0, 1):                   \
++                ret = _mm_shuffle_epi_2301(_a);             \
++                break;                                      \
++            case _MM_SHUFFLE(0, 3, 2, 1):                   \
++                ret = _mm_shuffle_epi_0321(_a);             \
++                break;                                      \
++            case _MM_SHUFFLE(2, 1, 0, 3):                   \
++                ret = _mm_shuffle_epi_2103(_a);             \
++                break;                                      \
++            case _MM_SHUFFLE(1, 0, 1, 0):                   \
++                ret = _mm_shuffle_epi_1010(_a);             \
++                break;                                      \
++            case _MM_SHUFFLE(1, 0, 0, 1):                   \
++                ret = _mm_shuffle_epi_1001(_a);             \
++                break;                                      \
++            case _MM_SHUFFLE(0, 1, 0, 1):                   \
++                ret = _mm_shuffle_epi_0101(_a);             \
++                break;                                      \
++            case _MM_SHUFFLE(2, 2, 1, 1):                   \
++                ret = _mm_shuffle_epi_2211(_a);             \
++                break;                                      \
++            case _MM_SHUFFLE(0, 1, 2, 2):                   \
++                ret = _mm_shuffle_epi_0122(_a);             \
++                break;                                      \
++            case _MM_SHUFFLE(3, 3, 3, 2):                   \
++                ret = _mm_shuffle_epi_3332(_a);             \
++                break;                                      \
++            case _MM_SHUFFLE(0, 0, 0, 0):                   \
++                ret = _mm_shuffle_epi32_splat(_a, 0);       \
++                break;                                      \
++            case _MM_SHUFFLE(1, 1, 1, 1):                   \
++                ret = _mm_shuffle_epi32_splat(_a, 1);       \
++                break;                                      \
++            case _MM_SHUFFLE(2, 2, 2, 2):                   \
++                ret = _mm_shuffle_epi32_splat(_a, 2);       \
++                break;                                      \
++            case _MM_SHUFFLE(3, 3, 3, 3):                   \
++                ret = _mm_shuffle_epi32_splat(_a, 3);       \
++                break;                                      \
++            default:                                        \
++                ret = _mm_shuffle_epi32_default(_a, (imm)); \
++                break;                                      \
++        } _sse2neon_return(ret);)
++#endif
++
++// Shuffle double-precision (64-bit) floating-point elements using the control
++// in imm8, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_shuffle_pd
++#ifdef _sse2neon_shuffle
++#define _mm_shuffle_pd(a, b, imm8)                                            \
++    vreinterpretq_m128d_s64(                                                  \
++        vshuffleq_s64(vreinterpretq_s64_m128d(a), vreinterpretq_s64_m128d(b), \
++                      imm8 & 0x1, ((imm8 & 0x2) >> 1) + 2))
++#else
++#define _mm_shuffle_pd(a, b, imm8)                                     \
++    _mm_castsi128_pd(_mm_set_epi64x(                                   \
++        vgetq_lane_s64(vreinterpretq_s64_m128d(b), (imm8 & 0x2) >> 1), \
++        vgetq_lane_s64(vreinterpretq_s64_m128d(a), imm8 & 0x1)))
++#endif
++
++// FORCE_INLINE __m128i _mm_shufflehi_epi16(__m128i a,
++//                                          __constrange(0,255) int imm)
++#if defined(_sse2neon_shuffle)
++#define _mm_shufflehi_epi16(a, imm)                                           \
++    __extension__({                                                           \
++        int16x8_t _input = vreinterpretq_s16_m128i(a);                        \
++        int16x8_t _shuf =                                                     \
++            vshuffleq_s16(_input, _input, 0, 1, 2, 3, ((imm) & (0x3)) + 4,    \
++                          (((imm) >> 2) & 0x3) + 4, (((imm) >> 4) & 0x3) + 4, \
++                          (((imm) >> 6) & 0x3) + 4);                          \
++        vreinterpretq_m128i_s16(_shuf);                                       \
++    })
++#else  // generic
++#define _mm_shufflehi_epi16(a, imm) _mm_shufflehi_epi16_function((a), (imm))
++#endif
++
++// FORCE_INLINE __m128i _mm_shufflelo_epi16(__m128i a,
++//                                          __constrange(0,255) int imm)
++#if defined(_sse2neon_shuffle)
++#define _mm_shufflelo_epi16(a, imm)                                  \
++    __extension__({                                                  \
++        int16x8_t _input = vreinterpretq_s16_m128i(a);               \
++        int16x8_t _shuf = vshuffleq_s16(                             \
++            _input, _input, ((imm) & (0x3)), (((imm) >> 2) & 0x3),   \
++            (((imm) >> 4) & 0x3), (((imm) >> 6) & 0x3), 4, 5, 6, 7); \
++        vreinterpretq_m128i_s16(_shuf);                              \
++    })
++#else  // generic
++#define _mm_shufflelo_epi16(a, imm) _mm_shufflelo_epi16_function((a), (imm))
++#endif
++
++// Shift packed 16-bit integers in a left by count while shifting in zeros, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sll_epi16
++FORCE_INLINE __m128i _mm_sll_epi16(__m128i a, __m128i count)
++{
++    uint64_t c = vreinterpretq_nth_u64_m128i(count, 0);
++    if (_sse2neon_unlikely(c & ~15))
++        return _mm_setzero_si128();
++
++    int16x8_t vc = vdupq_n_s16((int16_t) c);
++    return vreinterpretq_m128i_s16(vshlq_s16(vreinterpretq_s16_m128i(a), vc));
++}
++
++// Shift packed 32-bit integers in a left by count while shifting in zeros, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sll_epi32
++FORCE_INLINE __m128i _mm_sll_epi32(__m128i a, __m128i count)
++{
++    uint64_t c = vreinterpretq_nth_u64_m128i(count, 0);
++    if (_sse2neon_unlikely(c & ~31))
++        return _mm_setzero_si128();
++
++    int32x4_t vc = vdupq_n_s32((int32_t) c);
++    return vreinterpretq_m128i_s32(vshlq_s32(vreinterpretq_s32_m128i(a), vc));
++}
++
++// Shift packed 64-bit integers in a left by count while shifting in zeros, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sll_epi64
++FORCE_INLINE __m128i _mm_sll_epi64(__m128i a, __m128i count)
++{
++    uint64_t c = vreinterpretq_nth_u64_m128i(count, 0);
++    if (_sse2neon_unlikely(c & ~63))
++        return _mm_setzero_si128();
++
++    int64x2_t vc = vdupq_n_s64((int64_t) c);
++    return vreinterpretq_m128i_s64(vshlq_s64(vreinterpretq_s64_m128i(a), vc));
++}
++
++// Shift packed 16-bit integers in a left by imm8 while shifting in zeros, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_slli_epi16
++FORCE_INLINE __m128i _mm_slli_epi16(__m128i a, int imm)
++{
++    if (_sse2neon_unlikely(imm & ~15))
++        return _mm_setzero_si128();
++    return vreinterpretq_m128i_s16(
++        vshlq_s16(vreinterpretq_s16_m128i(a), vdupq_n_s16(imm)));
++}
++
++// Shift packed 32-bit integers in a left by imm8 while shifting in zeros, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_slli_epi32
++FORCE_INLINE __m128i _mm_slli_epi32(__m128i a, int imm)
++{
++    if (_sse2neon_unlikely(imm & ~31))
++        return _mm_setzero_si128();
++    return vreinterpretq_m128i_s32(
++        vshlq_s32(vreinterpretq_s32_m128i(a), vdupq_n_s32(imm)));
++}
++
++// Shift packed 64-bit integers in a left by imm8 while shifting in zeros, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_slli_epi64
++FORCE_INLINE __m128i _mm_slli_epi64(__m128i a, int imm)
++{
++    if (_sse2neon_unlikely(imm & ~63))
++        return _mm_setzero_si128();
++    return vreinterpretq_m128i_s64(
++        vshlq_s64(vreinterpretq_s64_m128i(a), vdupq_n_s64(imm)));
++}
++
++// Shift a left by imm8 bytes while shifting in zeros, and store the results in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_slli_si128
++#define _mm_slli_si128(a, imm)                                              \
++    _sse2neon_define1(                                                      \
++        __m128i, a, int8x16_t ret;                                          \
++        if (_sse2neon_unlikely(imm == 0)) ret = vreinterpretq_s8_m128i(_a); \
++        else if (_sse2neon_unlikely((imm) & ~15)) ret = vdupq_n_s8(0);      \
++        else ret = vextq_s8(vdupq_n_s8(0), vreinterpretq_s8_m128i(_a),      \
++                            ((imm <= 0 || imm > 15) ? 0 : (16 - imm)));     \
++        _sse2neon_return(vreinterpretq_m128i_s8(ret));)
++
++// Compute the square root of packed double-precision (64-bit) floating-point
++// elements in a, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sqrt_pd
++FORCE_INLINE __m128d _mm_sqrt_pd(__m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(vsqrtq_f64(vreinterpretq_f64_m128d(a)));
++#else
++    double a0 = sqrt(((double *) &a)[0]);
++    double a1 = sqrt(((double *) &a)[1]);
++    return _mm_set_pd(a1, a0);
++#endif
++}
++
++// Compute the square root of the lower double-precision (64-bit) floating-point
++// element in b, store the result in the lower element of dst, and copy the
++// upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sqrt_sd
++FORCE_INLINE __m128d _mm_sqrt_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return _mm_move_sd(a, _mm_sqrt_pd(b));
++#else
++    return _mm_set_pd(((double *) &a)[1], sqrt(((double *) &b)[0]));
++#endif
++}
++
++// Shift packed 16-bit integers in a right by count while shifting in sign bits,
++// and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sra_epi16
++FORCE_INLINE __m128i _mm_sra_epi16(__m128i a, __m128i count)
++{
++    int64_t c = vgetq_lane_s64(count, 0);
++    if (_sse2neon_unlikely(c & ~15))
++        return _mm_cmplt_epi16(a, _mm_setzero_si128());
++    return vreinterpretq_m128i_s16(
++        vshlq_s16((int16x8_t) a, vdupq_n_s16((int) -c)));
++}
++
++// Shift packed 32-bit integers in a right by count while shifting in sign bits,
++// and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sra_epi32
++FORCE_INLINE __m128i _mm_sra_epi32(__m128i a, __m128i count)
++{
++    int64_t c = vgetq_lane_s64(count, 0);
++    if (_sse2neon_unlikely(c & ~31))
++        return _mm_cmplt_epi32(a, _mm_setzero_si128());
++    return vreinterpretq_m128i_s32(
++        vshlq_s32((int32x4_t) a, vdupq_n_s32((int) -c)));
++}
++
++// Shift packed 16-bit integers in a right by imm8 while shifting in sign
++// bits, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_srai_epi16
++FORCE_INLINE __m128i _mm_srai_epi16(__m128i a, int imm)
++{
++    const int count = (imm & ~15) ? 15 : imm;
++    return (__m128i) vshlq_s16((int16x8_t) a, vdupq_n_s16(-count));
++}
++
++// Shift packed 32-bit integers in a right by imm8 while shifting in sign bits,
++// and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_srai_epi32
++// FORCE_INLINE __m128i _mm_srai_epi32(__m128i a, __constrange(0,255) int imm)
++#define _mm_srai_epi32(a, imm)                                                \
++    _sse2neon_define0(                                                        \
++        __m128i, a, __m128i ret; if (_sse2neon_unlikely((imm) == 0)) {        \
++            ret = _a;                                                         \
++        } else if (_sse2neon_likely(0 < (imm) && (imm) < 32)) {               \
++            ret = vreinterpretq_m128i_s32(                                    \
++                vshlq_s32(vreinterpretq_s32_m128i(_a), vdupq_n_s32(-(imm)))); \
++        } else {                                                              \
++            ret = vreinterpretq_m128i_s32(                                    \
++                vshrq_n_s32(vreinterpretq_s32_m128i(_a), 31));                \
++        } _sse2neon_return(ret);)
++
++// Shift packed 16-bit integers in a right by count while shifting in zeros, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_srl_epi16
++FORCE_INLINE __m128i _mm_srl_epi16(__m128i a, __m128i count)
++{
++    uint64_t c = vreinterpretq_nth_u64_m128i(count, 0);
++    if (_sse2neon_unlikely(c & ~15))
++        return _mm_setzero_si128();
++
++    int16x8_t vc = vdupq_n_s16(-(int16_t) c);
++    return vreinterpretq_m128i_u16(vshlq_u16(vreinterpretq_u16_m128i(a), vc));
++}
++
++// Shift packed 32-bit integers in a right by count while shifting in zeros, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_srl_epi32
++FORCE_INLINE __m128i _mm_srl_epi32(__m128i a, __m128i count)
++{
++    uint64_t c = vreinterpretq_nth_u64_m128i(count, 0);
++    if (_sse2neon_unlikely(c & ~31))
++        return _mm_setzero_si128();
++
++    int32x4_t vc = vdupq_n_s32(-(int32_t) c);
++    return vreinterpretq_m128i_u32(vshlq_u32(vreinterpretq_u32_m128i(a), vc));
++}
++
++// Shift packed 64-bit integers in a right by count while shifting in zeros, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_srl_epi64
++FORCE_INLINE __m128i _mm_srl_epi64(__m128i a, __m128i count)
++{
++    uint64_t c = vreinterpretq_nth_u64_m128i(count, 0);
++    if (_sse2neon_unlikely(c & ~63))
++        return _mm_setzero_si128();
++
++    int64x2_t vc = vdupq_n_s64(-(int64_t) c);
++    return vreinterpretq_m128i_u64(vshlq_u64(vreinterpretq_u64_m128i(a), vc));
++}
++
++// Shift packed 16-bit integers in a right by imm8 while shifting in zeros, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_srli_epi16
++#define _mm_srli_epi16(a, imm)                                                \
++    _sse2neon_define0(                                                        \
++        __m128i, a, __m128i ret; if (_sse2neon_unlikely((imm) & ~15)) {       \
++            ret = _mm_setzero_si128();                                        \
++        } else {                                                              \
++            ret = vreinterpretq_m128i_u16(                                    \
++                vshlq_u16(vreinterpretq_u16_m128i(_a), vdupq_n_s16(-(imm)))); \
++        } _sse2neon_return(ret);)
++
++// Shift packed 32-bit integers in a right by imm8 while shifting in zeros, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_srli_epi32
++// FORCE_INLINE __m128i _mm_srli_epi32(__m128i a, __constrange(0,255) int imm)
++#define _mm_srli_epi32(a, imm)                                                \
++    _sse2neon_define0(                                                        \
++        __m128i, a, __m128i ret; if (_sse2neon_unlikely((imm) & ~31)) {       \
++            ret = _mm_setzero_si128();                                        \
++        } else {                                                              \
++            ret = vreinterpretq_m128i_u32(                                    \
++                vshlq_u32(vreinterpretq_u32_m128i(_a), vdupq_n_s32(-(imm)))); \
++        } _sse2neon_return(ret);)
++
++// Shift packed 64-bit integers in a right by imm8 while shifting in zeros, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_srli_epi64
++#define _mm_srli_epi64(a, imm)                                                \
++    _sse2neon_define0(                                                        \
++        __m128i, a, __m128i ret; if (_sse2neon_unlikely((imm) & ~63)) {       \
++            ret = _mm_setzero_si128();                                        \
++        } else {                                                              \
++            ret = vreinterpretq_m128i_u64(                                    \
++                vshlq_u64(vreinterpretq_u64_m128i(_a), vdupq_n_s64(-(imm)))); \
++        } _sse2neon_return(ret);)
++
++// Shift a right by imm8 bytes while shifting in zeros, and store the results in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_srli_si128
++#define _mm_srli_si128(a, imm)                                         \
++    _sse2neon_define1(                                                 \
++        __m128i, a, int8x16_t ret;                                     \
++        if (_sse2neon_unlikely((imm) & ~15)) ret = vdupq_n_s8(0);      \
++        else ret = vextq_s8(vreinterpretq_s8_m128i(_a), vdupq_n_s8(0), \
++                            (imm > 15 ? 0 : imm));                     \
++        _sse2neon_return(vreinterpretq_m128i_s8(ret));)
++
++// Store 128-bits (composed of 2 packed double-precision (64-bit) floating-point
++// elements) from a into memory. mem_addr must be aligned on a 16-byte boundary
++// or a general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_store_pd
++FORCE_INLINE void _mm_store_pd(double *mem_addr, __m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    vst1q_f64((float64_t *) mem_addr, vreinterpretq_f64_m128d(a));
++#else
++    vst1q_f32((float32_t *) mem_addr, vreinterpretq_f32_m128d(a));
++#endif
++}
++
++// Store the lower double-precision (64-bit) floating-point element from a into
++// 2 contiguous elements in memory. mem_addr must be aligned on a 16-byte
++// boundary or a general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_store_pd1
++FORCE_INLINE void _mm_store_pd1(double *mem_addr, __m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    float64x1_t a_low = vget_low_f64(vreinterpretq_f64_m128d(a));
++    vst1q_f64((float64_t *) mem_addr,
++              vreinterpretq_f64_m128d(vcombine_f64(a_low, a_low)));
++#else
++    float32x2_t a_low = vget_low_f32(vreinterpretq_f32_m128d(a));
++    vst1q_f32((float32_t *) mem_addr,
++              vreinterpretq_f32_m128d(vcombine_f32(a_low, a_low)));
++#endif
++}
++
++// Store the lower double-precision (64-bit) floating-point element from a into
++// memory. mem_addr does not need to be aligned on any particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=mm_store_sd
++FORCE_INLINE void _mm_store_sd(double *mem_addr, __m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    vst1_f64((float64_t *) mem_addr, vget_low_f64(vreinterpretq_f64_m128d(a)));
++#else
++    vst1_u64((uint64_t *) mem_addr, vget_low_u64(vreinterpretq_u64_m128d(a)));
++#endif
++}
++
++// Store 128-bits of integer data from a into memory. mem_addr must be aligned
++// on a 16-byte boundary or a general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_store_si128
++FORCE_INLINE void _mm_store_si128(__m128i *p, __m128i a)
++{
++    vst1q_s32((int32_t *) p, vreinterpretq_s32_m128i(a));
++}
++
++// Store the lower double-precision (64-bit) floating-point element from a into
++// 2 contiguous elements in memory. mem_addr must be aligned on a 16-byte
++// boundary or a general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#expand=9,526,5601&text=_mm_store1_pd
++#define _mm_store1_pd _mm_store_pd1
++
++// Store the upper double-precision (64-bit) floating-point element from a into
++// memory.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storeh_pd
++FORCE_INLINE void _mm_storeh_pd(double *mem_addr, __m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    vst1_f64((float64_t *) mem_addr, vget_high_f64(vreinterpretq_f64_m128d(a)));
++#else
++    vst1_f32((float32_t *) mem_addr, vget_high_f32(vreinterpretq_f32_m128d(a)));
++#endif
++}
++
++// Store 64-bit integer from the first element of a into memory.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storel_epi64
++FORCE_INLINE void _mm_storel_epi64(__m128i *a, __m128i b)
++{
++    vst1_u64((uint64_t *) a, vget_low_u64(vreinterpretq_u64_m128i(b)));
++}
++
++// Store the lower double-precision (64-bit) floating-point element from a into
++// memory.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storel_pd
++FORCE_INLINE void _mm_storel_pd(double *mem_addr, __m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    vst1_f64((float64_t *) mem_addr, vget_low_f64(vreinterpretq_f64_m128d(a)));
++#else
++    vst1_f32((float32_t *) mem_addr, vget_low_f32(vreinterpretq_f32_m128d(a)));
++#endif
++}
++
++// Store 2 double-precision (64-bit) floating-point elements from a into memory
++// in reverse order. mem_addr must be aligned on a 16-byte boundary or a
++// general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storer_pd
++FORCE_INLINE void _mm_storer_pd(double *mem_addr, __m128d a)
++{
++    float32x4_t f = vreinterpretq_f32_m128d(a);
++    _mm_store_pd(mem_addr, vreinterpretq_m128d_f32(vextq_f32(f, f, 2)));
++}
++
++// Store 128-bits (composed of 2 packed double-precision (64-bit) floating-point
++// elements) from a into memory. mem_addr does not need to be aligned on any
++// particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storeu_pd
++FORCE_INLINE void _mm_storeu_pd(double *mem_addr, __m128d a)
++{
++    _mm_store_pd(mem_addr, a);
++}
++
++// Store 128-bits of integer data from a into memory. mem_addr does not need to
++// be aligned on any particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storeu_si128
++FORCE_INLINE void _mm_storeu_si128(__m128i *p, __m128i a)
++{
++    vst1q_s32((int32_t *) p, vreinterpretq_s32_m128i(a));
++}
++
++// Store 32-bit integer from the first element of a into memory. mem_addr does
++// not need to be aligned on any particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storeu_si32
++FORCE_INLINE void _mm_storeu_si32(void *p, __m128i a)
++{
++    vst1q_lane_s32((int32_t *) p, vreinterpretq_s32_m128i(a), 0);
++}
++
++// Store 128-bits (composed of 2 packed double-precision (64-bit) floating-point
++// elements) from a into memory using a non-temporal memory hint. mem_addr must
++// be aligned on a 16-byte boundary or a general-protection exception may be
++// generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_stream_pd
++FORCE_INLINE void _mm_stream_pd(double *p, __m128d a)
++{
++#if __has_builtin(__builtin_nontemporal_store)
++    __builtin_nontemporal_store(a, (__m128d *) p);
++#elif defined(__aarch64__) || defined(_M_ARM64)
++    vst1q_f64(p, vreinterpretq_f64_m128d(a));
++#else
++    vst1q_s64((int64_t *) p, vreinterpretq_s64_m128d(a));
++#endif
++}
++
++// Store 128-bits of integer data from a into memory using a non-temporal memory
++// hint. mem_addr must be aligned on a 16-byte boundary or a general-protection
++// exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_stream_si128
++FORCE_INLINE void _mm_stream_si128(__m128i *p, __m128i a)
++{
++#if __has_builtin(__builtin_nontemporal_store)
++    __builtin_nontemporal_store(a, p);
++#else
++    vst1q_s64((int64_t *) p, vreinterpretq_s64_m128i(a));
++#endif
++}
++
++// Store 32-bit integer a into memory using a non-temporal hint to minimize
++// cache pollution. If the cache line containing address mem_addr is already in
++// the cache, the cache will be updated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_stream_si32
++FORCE_INLINE void _mm_stream_si32(int *p, int a)
++{
++    vst1q_lane_s32((int32_t *) p, vdupq_n_s32(a), 0);
++}
++
++// Store 64-bit integer a into memory using a non-temporal hint to minimize
++// cache pollution. If the cache line containing address mem_addr is already in
++// the cache, the cache will be updated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_stream_si64
++FORCE_INLINE void _mm_stream_si64(__int64 *p, __int64 a)
++{
++    vst1_s64((int64_t *) p, vdup_n_s64((int64_t) a));
++}
++
++// Subtract packed 16-bit integers in b from packed 16-bit integers in a, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sub_epi16
++FORCE_INLINE __m128i _mm_sub_epi16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s16(
++        vsubq_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b)));
++}
++
++// Subtract packed 32-bit integers in b from packed 32-bit integers in a, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sub_epi32
++FORCE_INLINE __m128i _mm_sub_epi32(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s32(
++        vsubq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++}
++
++// Subtract packed 64-bit integers in b from packed 64-bit integers in a, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sub_epi64
++FORCE_INLINE __m128i _mm_sub_epi64(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s64(
++        vsubq_s64(vreinterpretq_s64_m128i(a), vreinterpretq_s64_m128i(b)));
++}
++
++// Subtract packed 8-bit integers in b from packed 8-bit integers in a, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sub_epi8
++FORCE_INLINE __m128i _mm_sub_epi8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s8(
++        vsubq_s8(vreinterpretq_s8_m128i(a), vreinterpretq_s8_m128i(b)));
++}
++
++// Subtract packed double-precision (64-bit) floating-point elements in b from
++// packed double-precision (64-bit) floating-point elements in a, and store the
++// results in dst.
++//  https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=mm_sub_pd
++FORCE_INLINE __m128d _mm_sub_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vsubq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#else
++    double *da = (double *) &a;
++    double *db = (double *) &b;
++    double c[2];
++    c[0] = da[0] - db[0];
++    c[1] = da[1] - db[1];
++    return vld1q_f32((float32_t *) c);
++#endif
++}
++
++// Subtract the lower double-precision (64-bit) floating-point element in b from
++// the lower double-precision (64-bit) floating-point element in a, store the
++// result in the lower element of dst, and copy the upper element from a to the
++// upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sub_sd
++FORCE_INLINE __m128d _mm_sub_sd(__m128d a, __m128d b)
++{
++    return _mm_move_sd(a, _mm_sub_pd(a, b));
++}
++
++// Subtract 64-bit integer b from 64-bit integer a, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sub_si64
++FORCE_INLINE __m64 _mm_sub_si64(__m64 a, __m64 b)
++{
++    return vreinterpret_m64_s64(
++        vsub_s64(vreinterpret_s64_m64(a), vreinterpret_s64_m64(b)));
++}
++
++// Subtract packed signed 16-bit integers in b from packed 16-bit integers in a
++// using saturation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_subs_epi16
++FORCE_INLINE __m128i _mm_subs_epi16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s16(
++        vqsubq_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b)));
++}
++
++// Subtract packed signed 8-bit integers in b from packed 8-bit integers in a
++// using saturation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_subs_epi8
++FORCE_INLINE __m128i _mm_subs_epi8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s8(
++        vqsubq_s8(vreinterpretq_s8_m128i(a), vreinterpretq_s8_m128i(b)));
++}
++
++// Subtract packed unsigned 16-bit integers in b from packed unsigned 16-bit
++// integers in a using saturation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_subs_epu16
++FORCE_INLINE __m128i _mm_subs_epu16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u16(
++        vqsubq_u16(vreinterpretq_u16_m128i(a), vreinterpretq_u16_m128i(b)));
++}
++
++// Subtract packed unsigned 8-bit integers in b from packed unsigned 8-bit
++// integers in a using saturation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_subs_epu8
++FORCE_INLINE __m128i _mm_subs_epu8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u8(
++        vqsubq_u8(vreinterpretq_u8_m128i(a), vreinterpretq_u8_m128i(b)));
++}
++
++#define _mm_ucomieq_sd _mm_comieq_sd
++#define _mm_ucomige_sd _mm_comige_sd
++#define _mm_ucomigt_sd _mm_comigt_sd
++#define _mm_ucomile_sd _mm_comile_sd
++#define _mm_ucomilt_sd _mm_comilt_sd
++#define _mm_ucomineq_sd _mm_comineq_sd
++
++// Return vector of type __m128d with undefined elements.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_undefined_pd
++FORCE_INLINE __m128d _mm_undefined_pd(void)
++{
++#if defined(__GNUC__) || defined(__clang__)
++#pragma GCC diagnostic push
++#pragma GCC diagnostic ignored "-Wuninitialized"
++#endif
++    __m128d a;
++#if defined(_MSC_VER)
++    a = _mm_setzero_pd();
++#endif
++    return a;
++#if defined(__GNUC__) || defined(__clang__)
++#pragma GCC diagnostic pop
++#endif
++}
++
++// Unpack and interleave 16-bit integers from the high half of a and b, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_unpackhi_epi16
++FORCE_INLINE __m128i _mm_unpackhi_epi16(__m128i a, __m128i b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s16(
++        vzip2q_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b)));
++#else
++    int16x4_t a1 = vget_high_s16(vreinterpretq_s16_m128i(a));
++    int16x4_t b1 = vget_high_s16(vreinterpretq_s16_m128i(b));
++    int16x4x2_t result = vzip_s16(a1, b1);
++    return vreinterpretq_m128i_s16(vcombine_s16(result.val[0], result.val[1]));
++#endif
++}
++
++// Unpack and interleave 32-bit integers from the high half of a and b, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_unpackhi_epi32
++FORCE_INLINE __m128i _mm_unpackhi_epi32(__m128i a, __m128i b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s32(
++        vzip2q_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++#else
++    int32x2_t a1 = vget_high_s32(vreinterpretq_s32_m128i(a));
++    int32x2_t b1 = vget_high_s32(vreinterpretq_s32_m128i(b));
++    int32x2x2_t result = vzip_s32(a1, b1);
++    return vreinterpretq_m128i_s32(vcombine_s32(result.val[0], result.val[1]));
++#endif
++}
++
++// Unpack and interleave 64-bit integers from the high half of a and b, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_unpackhi_epi64
++FORCE_INLINE __m128i _mm_unpackhi_epi64(__m128i a, __m128i b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s64(
++        vzip2q_s64(vreinterpretq_s64_m128i(a), vreinterpretq_s64_m128i(b)));
++#else
++    int64x1_t a_h = vget_high_s64(vreinterpretq_s64_m128i(a));
++    int64x1_t b_h = vget_high_s64(vreinterpretq_s64_m128i(b));
++    return vreinterpretq_m128i_s64(vcombine_s64(a_h, b_h));
++#endif
++}
++
++// Unpack and interleave 8-bit integers from the high half of a and b, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_unpackhi_epi8
++FORCE_INLINE __m128i _mm_unpackhi_epi8(__m128i a, __m128i b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s8(
++        vzip2q_s8(vreinterpretq_s8_m128i(a), vreinterpretq_s8_m128i(b)));
++#else
++    int8x8_t a1 =
++        vreinterpret_s8_s16(vget_high_s16(vreinterpretq_s16_m128i(a)));
++    int8x8_t b1 =
++        vreinterpret_s8_s16(vget_high_s16(vreinterpretq_s16_m128i(b)));
++    int8x8x2_t result = vzip_s8(a1, b1);
++    return vreinterpretq_m128i_s8(vcombine_s8(result.val[0], result.val[1]));
++#endif
++}
++
++// Unpack and interleave double-precision (64-bit) floating-point elements from
++// the high half of a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_unpackhi_pd
++FORCE_INLINE __m128d _mm_unpackhi_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vzip2q_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#else
++    return vreinterpretq_m128d_s64(
++        vcombine_s64(vget_high_s64(vreinterpretq_s64_m128d(a)),
++                     vget_high_s64(vreinterpretq_s64_m128d(b))));
++#endif
++}
++
++// Unpack and interleave 16-bit integers from the low half of a and b, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_unpacklo_epi16
++FORCE_INLINE __m128i _mm_unpacklo_epi16(__m128i a, __m128i b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s16(
++        vzip1q_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b)));
++#else
++    int16x4_t a1 = vget_low_s16(vreinterpretq_s16_m128i(a));
++    int16x4_t b1 = vget_low_s16(vreinterpretq_s16_m128i(b));
++    int16x4x2_t result = vzip_s16(a1, b1);
++    return vreinterpretq_m128i_s16(vcombine_s16(result.val[0], result.val[1]));
++#endif
++}
++
++// Unpack and interleave 32-bit integers from the low half of a and b, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_unpacklo_epi32
++FORCE_INLINE __m128i _mm_unpacklo_epi32(__m128i a, __m128i b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s32(
++        vzip1q_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++#else
++    int32x2_t a1 = vget_low_s32(vreinterpretq_s32_m128i(a));
++    int32x2_t b1 = vget_low_s32(vreinterpretq_s32_m128i(b));
++    int32x2x2_t result = vzip_s32(a1, b1);
++    return vreinterpretq_m128i_s32(vcombine_s32(result.val[0], result.val[1]));
++#endif
++}
++
++// Unpack and interleave 64-bit integers from the low half of a and b, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_unpacklo_epi64
++FORCE_INLINE __m128i _mm_unpacklo_epi64(__m128i a, __m128i b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s64(
++        vzip1q_s64(vreinterpretq_s64_m128i(a), vreinterpretq_s64_m128i(b)));
++#else
++    int64x1_t a_l = vget_low_s64(vreinterpretq_s64_m128i(a));
++    int64x1_t b_l = vget_low_s64(vreinterpretq_s64_m128i(b));
++    return vreinterpretq_m128i_s64(vcombine_s64(a_l, b_l));
++#endif
++}
++
++// Unpack and interleave 8-bit integers from the low half of a and b, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_unpacklo_epi8
++FORCE_INLINE __m128i _mm_unpacklo_epi8(__m128i a, __m128i b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s8(
++        vzip1q_s8(vreinterpretq_s8_m128i(a), vreinterpretq_s8_m128i(b)));
++#else
++    int8x8_t a1 = vreinterpret_s8_s16(vget_low_s16(vreinterpretq_s16_m128i(a)));
++    int8x8_t b1 = vreinterpret_s8_s16(vget_low_s16(vreinterpretq_s16_m128i(b)));
++    int8x8x2_t result = vzip_s8(a1, b1);
++    return vreinterpretq_m128i_s8(vcombine_s8(result.val[0], result.val[1]));
++#endif
++}
++
++// Unpack and interleave double-precision (64-bit) floating-point elements from
++// the low half of a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_unpacklo_pd
++FORCE_INLINE __m128d _mm_unpacklo_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vzip1q_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#else
++    return vreinterpretq_m128d_s64(
++        vcombine_s64(vget_low_s64(vreinterpretq_s64_m128d(a)),
++                     vget_low_s64(vreinterpretq_s64_m128d(b))));
++#endif
++}
++
++// Compute the bitwise XOR of packed double-precision (64-bit) floating-point
++// elements in a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_xor_pd
++FORCE_INLINE __m128d _mm_xor_pd(__m128d a, __m128d b)
++{
++    return vreinterpretq_m128d_s64(
++        veorq_s64(vreinterpretq_s64_m128d(a), vreinterpretq_s64_m128d(b)));
++}
++
++// Compute the bitwise XOR of 128 bits (representing integer data) in a and b,
++// and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_xor_si128
++FORCE_INLINE __m128i _mm_xor_si128(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s32(
++        veorq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++}
++
++/* SSE3 */
++
++// Alternatively add and subtract packed double-precision (64-bit)
++// floating-point elements in a to/from packed elements in b, and store the
++// results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_addsub_pd
++FORCE_INLINE __m128d _mm_addsub_pd(__m128d a, __m128d b)
++{
++    _sse2neon_const __m128d mask = _mm_set_pd(1.0f, -1.0f);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(vfmaq_f64(vreinterpretq_f64_m128d(a),
++                                             vreinterpretq_f64_m128d(b),
++                                             vreinterpretq_f64_m128d(mask)));
++#else
++    return _mm_add_pd(_mm_mul_pd(b, mask), a);
++#endif
++}
++
++// Alternatively add and subtract packed single-precision (32-bit)
++// floating-point elements in a to/from packed elements in b, and store the
++// results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=addsub_ps
++FORCE_INLINE __m128 _mm_addsub_ps(__m128 a, __m128 b)
++{
++    _sse2neon_const __m128 mask = _mm_setr_ps(-1.0f, 1.0f, -1.0f, 1.0f);
++#if (defined(__aarch64__) || defined(_M_ARM64)) || \
++    defined(__ARM_FEATURE_FMA) /* VFPv4+ */
++    return vreinterpretq_m128_f32(vfmaq_f32(vreinterpretq_f32_m128(a),
++                                            vreinterpretq_f32_m128(mask),
++                                            vreinterpretq_f32_m128(b)));
++#else
++    return _mm_add_ps(_mm_mul_ps(b, mask), a);
++#endif
++}
++
++// Horizontally add adjacent pairs of double-precision (64-bit) floating-point
++// elements in a and b, and pack the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hadd_pd
++FORCE_INLINE __m128d _mm_hadd_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vpaddq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#else
++    double *da = (double *) &a;
++    double *db = (double *) &b;
++    double c[] = {da[0] + da[1], db[0] + db[1]};
++    return vreinterpretq_m128d_u64(vld1q_u64((uint64_t *) c));
++#endif
++}
++
++// Horizontally add adjacent pairs of single-precision (32-bit) floating-point
++// elements in a and b, and pack the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hadd_ps
++FORCE_INLINE __m128 _mm_hadd_ps(__m128 a, __m128 b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128_f32(
++        vpaddq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++#else
++    float32x2_t a10 = vget_low_f32(vreinterpretq_f32_m128(a));
++    float32x2_t a32 = vget_high_f32(vreinterpretq_f32_m128(a));
++    float32x2_t b10 = vget_low_f32(vreinterpretq_f32_m128(b));
++    float32x2_t b32 = vget_high_f32(vreinterpretq_f32_m128(b));
++    return vreinterpretq_m128_f32(
++        vcombine_f32(vpadd_f32(a10, a32), vpadd_f32(b10, b32)));
++#endif
++}
++
++// Horizontally subtract adjacent pairs of double-precision (64-bit)
++// floating-point elements in a and b, and pack the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hsub_pd
++FORCE_INLINE __m128d _mm_hsub_pd(__m128d _a, __m128d _b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    float64x2_t a = vreinterpretq_f64_m128d(_a);
++    float64x2_t b = vreinterpretq_f64_m128d(_b);
++    return vreinterpretq_m128d_f64(
++        vsubq_f64(vuzp1q_f64(a, b), vuzp2q_f64(a, b)));
++#else
++    double *da = (double *) &_a;
++    double *db = (double *) &_b;
++    double c[] = {da[0] - da[1], db[0] - db[1]};
++    return vreinterpretq_m128d_u64(vld1q_u64((uint64_t *) c));
++#endif
++}
++
++// Horizontally subtract adjacent pairs of single-precision (32-bit)
++// floating-point elements in a and b, and pack the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hsub_ps
++FORCE_INLINE __m128 _mm_hsub_ps(__m128 _a, __m128 _b)
++{
++    float32x4_t a = vreinterpretq_f32_m128(_a);
++    float32x4_t b = vreinterpretq_f32_m128(_b);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128_f32(
++        vsubq_f32(vuzp1q_f32(a, b), vuzp2q_f32(a, b)));
++#else
++    float32x4x2_t c = vuzpq_f32(a, b);
++    return vreinterpretq_m128_f32(vsubq_f32(c.val[0], c.val[1]));
++#endif
++}
++
++// Load 128-bits of integer data from unaligned memory into dst. This intrinsic
++// may perform better than _mm_loadu_si128 when the data crosses a cache line
++// boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_lddqu_si128
++#define _mm_lddqu_si128 _mm_loadu_si128
++
++// Load a double-precision (64-bit) floating-point element from memory into both
++// elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loaddup_pd
++#define _mm_loaddup_pd _mm_load1_pd
++
++// Duplicate the low double-precision (64-bit) floating-point element from a,
++// and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_movedup_pd
++FORCE_INLINE __m128d _mm_movedup_pd(__m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vdupq_laneq_f64(vreinterpretq_f64_m128d(a), 0));
++#else
++    return vreinterpretq_m128d_u64(
++        vdupq_n_u64(vgetq_lane_u64(vreinterpretq_u64_m128d(a), 0)));
++#endif
++}
++
++// Duplicate odd-indexed single-precision (32-bit) floating-point elements
++// from a, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_movehdup_ps
++FORCE_INLINE __m128 _mm_movehdup_ps(__m128 a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128_f32(
++        vtrn2q_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(a)));
++#elif defined(_sse2neon_shuffle)
++    return vreinterpretq_m128_f32(vshuffleq_s32(
++        vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(a), 1, 1, 3, 3));
++#else
++    float32_t a1 = vgetq_lane_f32(vreinterpretq_f32_m128(a), 1);
++    float32_t a3 = vgetq_lane_f32(vreinterpretq_f32_m128(a), 3);
++    float ALIGN_STRUCT(16) data[4] = {a1, a1, a3, a3};
++    return vreinterpretq_m128_f32(vld1q_f32(data));
++#endif
++}
++
++// Duplicate even-indexed single-precision (32-bit) floating-point elements
++// from a, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_moveldup_ps
++FORCE_INLINE __m128 _mm_moveldup_ps(__m128 a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128_f32(
++        vtrn1q_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(a)));
++#elif defined(_sse2neon_shuffle)
++    return vreinterpretq_m128_f32(vshuffleq_s32(
++        vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(a), 0, 0, 2, 2));
++#else
++    float32_t a0 = vgetq_lane_f32(vreinterpretq_f32_m128(a), 0);
++    float32_t a2 = vgetq_lane_f32(vreinterpretq_f32_m128(a), 2);
++    float ALIGN_STRUCT(16) data[4] = {a0, a0, a2, a2};
++    return vreinterpretq_m128_f32(vld1q_f32(data));
++#endif
++}
++
++/* SSSE3 */
++
++// Compute the absolute value of packed signed 16-bit integers in a, and store
++// the unsigned results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_abs_epi16
++FORCE_INLINE __m128i _mm_abs_epi16(__m128i a)
++{
++    return vreinterpretq_m128i_s16(vabsq_s16(vreinterpretq_s16_m128i(a)));
++}
++
++// Compute the absolute value of packed signed 32-bit integers in a, and store
++// the unsigned results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_abs_epi32
++FORCE_INLINE __m128i _mm_abs_epi32(__m128i a)
++{
++    return vreinterpretq_m128i_s32(vabsq_s32(vreinterpretq_s32_m128i(a)));
++}
++
++// Compute the absolute value of packed signed 8-bit integers in a, and store
++// the unsigned results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_abs_epi8
++FORCE_INLINE __m128i _mm_abs_epi8(__m128i a)
++{
++    return vreinterpretq_m128i_s8(vabsq_s8(vreinterpretq_s8_m128i(a)));
++}
++
++// Compute the absolute value of packed signed 16-bit integers in a, and store
++// the unsigned results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_abs_pi16
++FORCE_INLINE __m64 _mm_abs_pi16(__m64 a)
++{
++    return vreinterpret_m64_s16(vabs_s16(vreinterpret_s16_m64(a)));
++}
++
++// Compute the absolute value of packed signed 32-bit integers in a, and store
++// the unsigned results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_abs_pi32
++FORCE_INLINE __m64 _mm_abs_pi32(__m64 a)
++{
++    return vreinterpret_m64_s32(vabs_s32(vreinterpret_s32_m64(a)));
++}
++
++// Compute the absolute value of packed signed 8-bit integers in a, and store
++// the unsigned results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_abs_pi8
++FORCE_INLINE __m64 _mm_abs_pi8(__m64 a)
++{
++    return vreinterpret_m64_s8(vabs_s8(vreinterpret_s8_m64(a)));
++}
++
++// Concatenate 16-byte blocks in a and b into a 32-byte temporary result, shift
++// the result right by imm8 bytes, and store the low 16 bytes in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_alignr_epi8
++#if defined(__GNUC__) && !defined(__clang__)
++#define _mm_alignr_epi8(a, b, imm)                                            \
++    __extension__({                                                           \
++        uint8x16_t _a = vreinterpretq_u8_m128i(a);                            \
++        uint8x16_t _b = vreinterpretq_u8_m128i(b);                            \
++        __m128i ret;                                                          \
++        if (_sse2neon_unlikely((imm) & ~31))                                  \
++            ret = vreinterpretq_m128i_u8(vdupq_n_u8(0));                      \
++        else if (imm >= 16)                                                   \
++            ret = _mm_srli_si128(a, imm >= 16 ? imm - 16 : 0);                \
++        else                                                                  \
++            ret =                                                             \
++                vreinterpretq_m128i_u8(vextq_u8(_b, _a, imm < 16 ? imm : 0)); \
++        ret;                                                                  \
++    })
++
++#else
++#define _mm_alignr_epi8(a, b, imm)                                          \
++    _sse2neon_define2(                                                      \
++        __m128i, a, b, uint8x16_t __a = vreinterpretq_u8_m128i(_a);         \
++        uint8x16_t __b = vreinterpretq_u8_m128i(_b); __m128i ret;           \
++        if (_sse2neon_unlikely((imm) & ~31)) ret =                          \
++            vreinterpretq_m128i_u8(vdupq_n_u8(0));                          \
++        else if (imm >= 16) ret =                                           \
++            _mm_srli_si128(_a, imm >= 16 ? imm - 16 : 0);                   \
++        else ret =                                                          \
++            vreinterpretq_m128i_u8(vextq_u8(__b, __a, imm < 16 ? imm : 0)); \
++        _sse2neon_return(ret);)
++
++#endif
++
++// Concatenate 8-byte blocks in a and b into a 16-byte temporary result, shift
++// the result right by imm8 bytes, and store the low 8 bytes in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_alignr_pi8
++#define _mm_alignr_pi8(a, b, imm)                                           \
++    _sse2neon_define2(                                                      \
++        __m64, a, b, __m64 ret; if (_sse2neon_unlikely((imm) >= 16)) {      \
++            ret = vreinterpret_m64_s8(vdup_n_s8(0));                        \
++        } else {                                                            \
++            uint8x8_t tmp_low;                                              \
++            uint8x8_t tmp_high;                                             \
++            if ((imm) >= 8) {                                               \
++                const int idx = (imm) -8;                                   \
++                tmp_low = vreinterpret_u8_m64(_a);                          \
++                tmp_high = vdup_n_u8(0);                                    \
++                ret = vreinterpret_m64_u8(vext_u8(tmp_low, tmp_high, idx)); \
++            } else {                                                        \
++                const int idx = (imm);                                      \
++                tmp_low = vreinterpret_u8_m64(_b);                          \
++                tmp_high = vreinterpret_u8_m64(_a);                         \
++                ret = vreinterpret_m64_u8(vext_u8(tmp_low, tmp_high, idx)); \
++            }                                                               \
++        } _sse2neon_return(ret);)
++
++// Horizontally add adjacent pairs of 16-bit integers in a and b, and pack the
++// signed 16-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hadd_epi16
++FORCE_INLINE __m128i _mm_hadd_epi16(__m128i _a, __m128i _b)
++{
++    int16x8_t a = vreinterpretq_s16_m128i(_a);
++    int16x8_t b = vreinterpretq_s16_m128i(_b);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s16(vpaddq_s16(a, b));
++#else
++    return vreinterpretq_m128i_s16(
++        vcombine_s16(vpadd_s16(vget_low_s16(a), vget_high_s16(a)),
++                     vpadd_s16(vget_low_s16(b), vget_high_s16(b))));
++#endif
++}
++
++// Horizontally add adjacent pairs of 32-bit integers in a and b, and pack the
++// signed 32-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hadd_epi32
++FORCE_INLINE __m128i _mm_hadd_epi32(__m128i _a, __m128i _b)
++{
++    int32x4_t a = vreinterpretq_s32_m128i(_a);
++    int32x4_t b = vreinterpretq_s32_m128i(_b);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s32(vpaddq_s32(a, b));
++#else
++    return vreinterpretq_m128i_s32(
++        vcombine_s32(vpadd_s32(vget_low_s32(a), vget_high_s32(a)),
++                     vpadd_s32(vget_low_s32(b), vget_high_s32(b))));
++#endif
++}
++
++// Horizontally add adjacent pairs of 16-bit integers in a and b, and pack the
++// signed 16-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hadd_pi16
++FORCE_INLINE __m64 _mm_hadd_pi16(__m64 a, __m64 b)
++{
++    return vreinterpret_m64_s16(
++        vpadd_s16(vreinterpret_s16_m64(a), vreinterpret_s16_m64(b)));
++}
++
++// Horizontally add adjacent pairs of 32-bit integers in a and b, and pack the
++// signed 32-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hadd_pi32
++FORCE_INLINE __m64 _mm_hadd_pi32(__m64 a, __m64 b)
++{
++    return vreinterpret_m64_s32(
++        vpadd_s32(vreinterpret_s32_m64(a), vreinterpret_s32_m64(b)));
++}
++
++// Horizontally add adjacent pairs of signed 16-bit integers in a and b using
++// saturation, and pack the signed 16-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hadds_epi16
++FORCE_INLINE __m128i _mm_hadds_epi16(__m128i _a, __m128i _b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    int16x8_t a = vreinterpretq_s16_m128i(_a);
++    int16x8_t b = vreinterpretq_s16_m128i(_b);
++    return vreinterpretq_s64_s16(
++        vqaddq_s16(vuzp1q_s16(a, b), vuzp2q_s16(a, b)));
++#else
++    int32x4_t a = vreinterpretq_s32_m128i(_a);
++    int32x4_t b = vreinterpretq_s32_m128i(_b);
++    // Interleave using vshrn/vmovn
++    // [a0|a2|a4|a6|b0|b2|b4|b6]
++    // [a1|a3|a5|a7|b1|b3|b5|b7]
++    int16x8_t ab0246 = vcombine_s16(vmovn_s32(a), vmovn_s32(b));
++    int16x8_t ab1357 = vcombine_s16(vshrn_n_s32(a, 16), vshrn_n_s32(b, 16));
++    // Saturated add
++    return vreinterpretq_m128i_s16(vqaddq_s16(ab0246, ab1357));
++#endif
++}
++
++// Horizontally add adjacent pairs of signed 16-bit integers in a and b using
++// saturation, and pack the signed 16-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hadds_pi16
++FORCE_INLINE __m64 _mm_hadds_pi16(__m64 _a, __m64 _b)
++{
++    int16x4_t a = vreinterpret_s16_m64(_a);
++    int16x4_t b = vreinterpret_s16_m64(_b);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpret_s64_s16(vqadd_s16(vuzp1_s16(a, b), vuzp2_s16(a, b)));
++#else
++    int16x4x2_t res = vuzp_s16(a, b);
++    return vreinterpret_s64_s16(vqadd_s16(res.val[0], res.val[1]));
++#endif
++}
++
++// Horizontally subtract adjacent pairs of 16-bit integers in a and b, and pack
++// the signed 16-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hsub_epi16
++FORCE_INLINE __m128i _mm_hsub_epi16(__m128i _a, __m128i _b)
++{
++    int16x8_t a = vreinterpretq_s16_m128i(_a);
++    int16x8_t b = vreinterpretq_s16_m128i(_b);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s16(
++        vsubq_s16(vuzp1q_s16(a, b), vuzp2q_s16(a, b)));
++#else
++    int16x8x2_t c = vuzpq_s16(a, b);
++    return vreinterpretq_m128i_s16(vsubq_s16(c.val[0], c.val[1]));
++#endif
++}
++
++// Horizontally subtract adjacent pairs of 32-bit integers in a and b, and pack
++// the signed 32-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hsub_epi32
++FORCE_INLINE __m128i _mm_hsub_epi32(__m128i _a, __m128i _b)
++{
++    int32x4_t a = vreinterpretq_s32_m128i(_a);
++    int32x4_t b = vreinterpretq_s32_m128i(_b);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s32(
++        vsubq_s32(vuzp1q_s32(a, b), vuzp2q_s32(a, b)));
++#else
++    int32x4x2_t c = vuzpq_s32(a, b);
++    return vreinterpretq_m128i_s32(vsubq_s32(c.val[0], c.val[1]));
++#endif
++}
++
++// Horizontally subtract adjacent pairs of 16-bit integers in a and b, and pack
++// the signed 16-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hsub_pi16
++FORCE_INLINE __m64 _mm_hsub_pi16(__m64 _a, __m64 _b)
++{
++    int16x4_t a = vreinterpret_s16_m64(_a);
++    int16x4_t b = vreinterpret_s16_m64(_b);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpret_m64_s16(vsub_s16(vuzp1_s16(a, b), vuzp2_s16(a, b)));
++#else
++    int16x4x2_t c = vuzp_s16(a, b);
++    return vreinterpret_m64_s16(vsub_s16(c.val[0], c.val[1]));
++#endif
++}
++
++// Horizontally subtract adjacent pairs of 32-bit integers in a and b, and pack
++// the signed 32-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=mm_hsub_pi32
++FORCE_INLINE __m64 _mm_hsub_pi32(__m64 _a, __m64 _b)
++{
++    int32x2_t a = vreinterpret_s32_m64(_a);
++    int32x2_t b = vreinterpret_s32_m64(_b);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpret_m64_s32(vsub_s32(vuzp1_s32(a, b), vuzp2_s32(a, b)));
++#else
++    int32x2x2_t c = vuzp_s32(a, b);
++    return vreinterpret_m64_s32(vsub_s32(c.val[0], c.val[1]));
++#endif
++}
++
++// Horizontally subtract adjacent pairs of signed 16-bit integers in a and b
++// using saturation, and pack the signed 16-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hsubs_epi16
++FORCE_INLINE __m128i _mm_hsubs_epi16(__m128i _a, __m128i _b)
++{
++    int16x8_t a = vreinterpretq_s16_m128i(_a);
++    int16x8_t b = vreinterpretq_s16_m128i(_b);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s16(
++        vqsubq_s16(vuzp1q_s16(a, b), vuzp2q_s16(a, b)));
++#else
++    int16x8x2_t c = vuzpq_s16(a, b);
++    return vreinterpretq_m128i_s16(vqsubq_s16(c.val[0], c.val[1]));
++#endif
++}
++
++// Horizontally subtract adjacent pairs of signed 16-bit integers in a and b
++// using saturation, and pack the signed 16-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hsubs_pi16
++FORCE_INLINE __m64 _mm_hsubs_pi16(__m64 _a, __m64 _b)
++{
++    int16x4_t a = vreinterpret_s16_m64(_a);
++    int16x4_t b = vreinterpret_s16_m64(_b);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpret_m64_s16(vqsub_s16(vuzp1_s16(a, b), vuzp2_s16(a, b)));
++#else
++    int16x4x2_t c = vuzp_s16(a, b);
++    return vreinterpret_m64_s16(vqsub_s16(c.val[0], c.val[1]));
++#endif
++}
++
++// Vertically multiply each unsigned 8-bit integer from a with the corresponding
++// signed 8-bit integer from b, producing intermediate signed 16-bit integers.
++// Horizontally add adjacent pairs of intermediate signed 16-bit integers,
++// and pack the saturated results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_maddubs_epi16
++FORCE_INLINE __m128i _mm_maddubs_epi16(__m128i _a, __m128i _b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    uint8x16_t a = vreinterpretq_u8_m128i(_a);
++    int8x16_t b = vreinterpretq_s8_m128i(_b);
++    int16x8_t tl = vmulq_s16(vreinterpretq_s16_u16(vmovl_u8(vget_low_u8(a))),
++                             vmovl_s8(vget_low_s8(b)));
++    int16x8_t th = vmulq_s16(vreinterpretq_s16_u16(vmovl_u8(vget_high_u8(a))),
++                             vmovl_s8(vget_high_s8(b)));
++    return vreinterpretq_m128i_s16(
++        vqaddq_s16(vuzp1q_s16(tl, th), vuzp2q_s16(tl, th)));
++#else
++    // This would be much simpler if x86 would choose to zero extend OR sign
++    // extend, not both. This could probably be optimized better.
++    uint16x8_t a = vreinterpretq_u16_m128i(_a);
++    int16x8_t b = vreinterpretq_s16_m128i(_b);
++
++    // Zero extend a
++    int16x8_t a_odd = vreinterpretq_s16_u16(vshrq_n_u16(a, 8));
++    int16x8_t a_even = vreinterpretq_s16_u16(vbicq_u16(a, vdupq_n_u16(0xff00)));
++
++    // Sign extend by shifting left then shifting right.
++    int16x8_t b_even = vshrq_n_s16(vshlq_n_s16(b, 8), 8);
++    int16x8_t b_odd = vshrq_n_s16(b, 8);
++
++    // multiply
++    int16x8_t prod1 = vmulq_s16(a_even, b_even);
++    int16x8_t prod2 = vmulq_s16(a_odd, b_odd);
++
++    // saturated add
++    return vreinterpretq_m128i_s16(vqaddq_s16(prod1, prod2));
++#endif
++}
++
++// Vertically multiply each unsigned 8-bit integer from a with the corresponding
++// signed 8-bit integer from b, producing intermediate signed 16-bit integers.
++// Horizontally add adjacent pairs of intermediate signed 16-bit integers, and
++// pack the saturated results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_maddubs_pi16
++FORCE_INLINE __m64 _mm_maddubs_pi16(__m64 _a, __m64 _b)
++{
++    uint16x4_t a = vreinterpret_u16_m64(_a);
++    int16x4_t b = vreinterpret_s16_m64(_b);
++
++    // Zero extend a
++    int16x4_t a_odd = vreinterpret_s16_u16(vshr_n_u16(a, 8));
++    int16x4_t a_even = vreinterpret_s16_u16(vand_u16(a, vdup_n_u16(0xff)));
++
++    // Sign extend by shifting left then shifting right.
++    int16x4_t b_even = vshr_n_s16(vshl_n_s16(b, 8), 8);
++    int16x4_t b_odd = vshr_n_s16(b, 8);
++
++    // multiply
++    int16x4_t prod1 = vmul_s16(a_even, b_even);
++    int16x4_t prod2 = vmul_s16(a_odd, b_odd);
++
++    // saturated add
++    return vreinterpret_m64_s16(vqadd_s16(prod1, prod2));
++}
++
++// Multiply packed signed 16-bit integers in a and b, producing intermediate
++// signed 32-bit integers. Shift right by 15 bits while rounding up, and store
++// the packed 16-bit integers in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mulhrs_epi16
++FORCE_INLINE __m128i _mm_mulhrs_epi16(__m128i a, __m128i b)
++{
++    // Has issues due to saturation
++    // return vreinterpretq_m128i_s16(vqrdmulhq_s16(a, b));
++
++    // Multiply
++    int32x4_t mul_lo = vmull_s16(vget_low_s16(vreinterpretq_s16_m128i(a)),
++                                 vget_low_s16(vreinterpretq_s16_m128i(b)));
++    int32x4_t mul_hi = vmull_s16(vget_high_s16(vreinterpretq_s16_m128i(a)),
++                                 vget_high_s16(vreinterpretq_s16_m128i(b)));
++
++    // Rounding narrowing shift right
++    // narrow = (int16_t)((mul + 16384) >> 15);
++    int16x4_t narrow_lo = vrshrn_n_s32(mul_lo, 15);
++    int16x4_t narrow_hi = vrshrn_n_s32(mul_hi, 15);
++
++    // Join together
++    return vreinterpretq_m128i_s16(vcombine_s16(narrow_lo, narrow_hi));
++}
++
++// Multiply packed signed 16-bit integers in a and b, producing intermediate
++// signed 32-bit integers. Truncate each intermediate integer to the 18 most
++// significant bits, round by adding 1, and store bits [16:1] to dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mulhrs_pi16
++FORCE_INLINE __m64 _mm_mulhrs_pi16(__m64 a, __m64 b)
++{
++    int32x4_t mul_extend =
++        vmull_s16((vreinterpret_s16_m64(a)), (vreinterpret_s16_m64(b)));
++
++    // Rounding narrowing shift right
++    return vreinterpret_m64_s16(vrshrn_n_s32(mul_extend, 15));
++}
++
++// Shuffle packed 8-bit integers in a according to shuffle control mask in the
++// corresponding 8-bit element of b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_shuffle_epi8
++FORCE_INLINE __m128i _mm_shuffle_epi8(__m128i a, __m128i b)
++{
++    int8x16_t tbl = vreinterpretq_s8_m128i(a);   // input a
++    uint8x16_t idx = vreinterpretq_u8_m128i(b);  // input b
++    uint8x16_t idx_masked =
++        vandq_u8(idx, vdupq_n_u8(0x8F));  // avoid using meaningless bits
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s8(vqtbl1q_s8(tbl, idx_masked));
++#elif defined(__GNUC__)
++    int8x16_t ret;
++    // %e and %f represent the even and odd D registers
++    // respectively.
++    __asm__ __volatile__(
++        "vtbl.8  %e[ret], {%e[tbl], %f[tbl]}, %e[idx]\n"
++        "vtbl.8  %f[ret], {%e[tbl], %f[tbl]}, %f[idx]\n"
++        : [ret] "=&w"(ret)
++        : [tbl] "w"(tbl), [idx] "w"(idx_masked));
++    return vreinterpretq_m128i_s8(ret);
++#else
++    // use this line if testing on aarch64
++    int8x8x2_t a_split = {vget_low_s8(tbl), vget_high_s8(tbl)};
++    return vreinterpretq_m128i_s8(
++        vcombine_s8(vtbl2_s8(a_split, vget_low_u8(idx_masked)),
++                    vtbl2_s8(a_split, vget_high_u8(idx_masked))));
++#endif
++}
++
++// Shuffle packed 8-bit integers in a according to shuffle control mask in the
++// corresponding 8-bit element of b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_shuffle_pi8
++FORCE_INLINE __m64 _mm_shuffle_pi8(__m64 a, __m64 b)
++{
++    const int8x8_t controlMask =
++        vand_s8(vreinterpret_s8_m64(b), vdup_n_s8((int8_t) (0x1 << 7 | 0x07)));
++    int8x8_t res = vtbl1_s8(vreinterpret_s8_m64(a), controlMask);
++    return vreinterpret_m64_s8(res);
++}
++
++// Negate packed 16-bit integers in a when the corresponding signed
++// 16-bit integer in b is negative, and store the results in dst.
++// Element in dst are zeroed out when the corresponding element
++// in b is zero.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sign_epi16
++FORCE_INLINE __m128i _mm_sign_epi16(__m128i _a, __m128i _b)
++{
++    int16x8_t a = vreinterpretq_s16_m128i(_a);
++    int16x8_t b = vreinterpretq_s16_m128i(_b);
++
++    // signed shift right: faster than vclt
++    // (b < 0) ? 0xFFFF : 0
++    uint16x8_t ltMask = vreinterpretq_u16_s16(vshrq_n_s16(b, 15));
++    // (b == 0) ? 0xFFFF : 0
++#if defined(__aarch64__) || defined(_M_ARM64)
++    int16x8_t zeroMask = vreinterpretq_s16_u16(vceqzq_s16(b));
++#else
++    int16x8_t zeroMask = vreinterpretq_s16_u16(vceqq_s16(b, vdupq_n_s16(0)));
++#endif
++
++    // bitwise select either a or negative 'a' (vnegq_s16(a) equals to negative
++    // 'a') based on ltMask
++    int16x8_t masked = vbslq_s16(ltMask, vnegq_s16(a), a);
++    // res = masked & (~zeroMask)
++    int16x8_t res = vbicq_s16(masked, zeroMask);
++    return vreinterpretq_m128i_s16(res);
++}
++
++// Negate packed 32-bit integers in a when the corresponding signed
++// 32-bit integer in b is negative, and store the results in dst.
++// Element in dst are zeroed out when the corresponding element
++// in b is zero.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sign_epi32
++FORCE_INLINE __m128i _mm_sign_epi32(__m128i _a, __m128i _b)
++{
++    int32x4_t a = vreinterpretq_s32_m128i(_a);
++    int32x4_t b = vreinterpretq_s32_m128i(_b);
++
++    // signed shift right: faster than vclt
++    // (b < 0) ? 0xFFFFFFFF : 0
++    uint32x4_t ltMask = vreinterpretq_u32_s32(vshrq_n_s32(b, 31));
++
++    // (b == 0) ? 0xFFFFFFFF : 0
++#if defined(__aarch64__) || defined(_M_ARM64)
++    int32x4_t zeroMask = vreinterpretq_s32_u32(vceqzq_s32(b));
++#else
++    int32x4_t zeroMask = vreinterpretq_s32_u32(vceqq_s32(b, vdupq_n_s32(0)));
++#endif
++
++    // bitwise select either a or negative 'a' (vnegq_s32(a) equals to negative
++    // 'a') based on ltMask
++    int32x4_t masked = vbslq_s32(ltMask, vnegq_s32(a), a);
++    // res = masked & (~zeroMask)
++    int32x4_t res = vbicq_s32(masked, zeroMask);
++    return vreinterpretq_m128i_s32(res);
++}
++
++// Negate packed 8-bit integers in a when the corresponding signed
++// 8-bit integer in b is negative, and store the results in dst.
++// Element in dst are zeroed out when the corresponding element
++// in b is zero.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sign_epi8
++FORCE_INLINE __m128i _mm_sign_epi8(__m128i _a, __m128i _b)
++{
++    int8x16_t a = vreinterpretq_s8_m128i(_a);
++    int8x16_t b = vreinterpretq_s8_m128i(_b);
++
++    // signed shift right: faster than vclt
++    // (b < 0) ? 0xFF : 0
++    uint8x16_t ltMask = vreinterpretq_u8_s8(vshrq_n_s8(b, 7));
++
++    // (b == 0) ? 0xFF : 0
++#if defined(__aarch64__) || defined(_M_ARM64)
++    int8x16_t zeroMask = vreinterpretq_s8_u8(vceqzq_s8(b));
++#else
++    int8x16_t zeroMask = vreinterpretq_s8_u8(vceqq_s8(b, vdupq_n_s8(0)));
++#endif
++
++    // bitwise select either a or negative 'a' (vnegq_s8(a) return negative 'a')
++    // based on ltMask
++    int8x16_t masked = vbslq_s8(ltMask, vnegq_s8(a), a);
++    // res = masked & (~zeroMask)
++    int8x16_t res = vbicq_s8(masked, zeroMask);
++
++    return vreinterpretq_m128i_s8(res);
++}
++
++// Negate packed 16-bit integers in a when the corresponding signed 16-bit
++// integer in b is negative, and store the results in dst. Element in dst are
++// zeroed out when the corresponding element in b is zero.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sign_pi16
++FORCE_INLINE __m64 _mm_sign_pi16(__m64 _a, __m64 _b)
++{
++    int16x4_t a = vreinterpret_s16_m64(_a);
++    int16x4_t b = vreinterpret_s16_m64(_b);
++
++    // signed shift right: faster than vclt
++    // (b < 0) ? 0xFFFF : 0
++    uint16x4_t ltMask = vreinterpret_u16_s16(vshr_n_s16(b, 15));
++
++    // (b == 0) ? 0xFFFF : 0
++#if defined(__aarch64__) || defined(_M_ARM64)
++    int16x4_t zeroMask = vreinterpret_s16_u16(vceqz_s16(b));
++#else
++    int16x4_t zeroMask = vreinterpret_s16_u16(vceq_s16(b, vdup_n_s16(0)));
++#endif
++
++    // bitwise select either a or negative 'a' (vneg_s16(a) return negative 'a')
++    // based on ltMask
++    int16x4_t masked = vbsl_s16(ltMask, vneg_s16(a), a);
++    // res = masked & (~zeroMask)
++    int16x4_t res = vbic_s16(masked, zeroMask);
++
++    return vreinterpret_m64_s16(res);
++}
++
++// Negate packed 32-bit integers in a when the corresponding signed 32-bit
++// integer in b is negative, and store the results in dst. Element in dst are
++// zeroed out when the corresponding element in b is zero.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sign_pi32
++FORCE_INLINE __m64 _mm_sign_pi32(__m64 _a, __m64 _b)
++{
++    int32x2_t a = vreinterpret_s32_m64(_a);
++    int32x2_t b = vreinterpret_s32_m64(_b);
++
++    // signed shift right: faster than vclt
++    // (b < 0) ? 0xFFFFFFFF : 0
++    uint32x2_t ltMask = vreinterpret_u32_s32(vshr_n_s32(b, 31));
++
++    // (b == 0) ? 0xFFFFFFFF : 0
++#if defined(__aarch64__) || defined(_M_ARM64)
++    int32x2_t zeroMask = vreinterpret_s32_u32(vceqz_s32(b));
++#else
++    int32x2_t zeroMask = vreinterpret_s32_u32(vceq_s32(b, vdup_n_s32(0)));
++#endif
++
++    // bitwise select either a or negative 'a' (vneg_s32(a) return negative 'a')
++    // based on ltMask
++    int32x2_t masked = vbsl_s32(ltMask, vneg_s32(a), a);
++    // res = masked & (~zeroMask)
++    int32x2_t res = vbic_s32(masked, zeroMask);
++
++    return vreinterpret_m64_s32(res);
++}
++
++// Negate packed 8-bit integers in a when the corresponding signed 8-bit integer
++// in b is negative, and store the results in dst. Element in dst are zeroed out
++// when the corresponding element in b is zero.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sign_pi8
++FORCE_INLINE __m64 _mm_sign_pi8(__m64 _a, __m64 _b)
++{
++    int8x8_t a = vreinterpret_s8_m64(_a);
++    int8x8_t b = vreinterpret_s8_m64(_b);
++
++    // signed shift right: faster than vclt
++    // (b < 0) ? 0xFF : 0
++    uint8x8_t ltMask = vreinterpret_u8_s8(vshr_n_s8(b, 7));
++
++    // (b == 0) ? 0xFF : 0
++#if defined(__aarch64__) || defined(_M_ARM64)
++    int8x8_t zeroMask = vreinterpret_s8_u8(vceqz_s8(b));
++#else
++    int8x8_t zeroMask = vreinterpret_s8_u8(vceq_s8(b, vdup_n_s8(0)));
++#endif
++
++    // bitwise select either a or negative 'a' (vneg_s8(a) return negative 'a')
++    // based on ltMask
++    int8x8_t masked = vbsl_s8(ltMask, vneg_s8(a), a);
++    // res = masked & (~zeroMask)
++    int8x8_t res = vbic_s8(masked, zeroMask);
++
++    return vreinterpret_m64_s8(res);
++}
++
++/* SSE4.1 */
++
++// Blend packed 16-bit integers from a and b using control mask imm8, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_blend_epi16
++// FORCE_INLINE __m128i _mm_blend_epi16(__m128i a, __m128i b,
++//                                      __constrange(0,255) int imm)
++#define _mm_blend_epi16(a, b, imm)                                      \
++    _sse2neon_define2(                                                  \
++        __m128i, a, b,                                                  \
++        const uint16_t _mask[8] =                                       \
++            _sse2neon_init(((imm) & (1 << 0)) ? (uint16_t) -1 : 0x0,    \
++                           ((imm) & (1 << 1)) ? (uint16_t) -1 : 0x0,    \
++                           ((imm) & (1 << 2)) ? (uint16_t) -1 : 0x0,    \
++                           ((imm) & (1 << 3)) ? (uint16_t) -1 : 0x0,    \
++                           ((imm) & (1 << 4)) ? (uint16_t) -1 : 0x0,    \
++                           ((imm) & (1 << 5)) ? (uint16_t) -1 : 0x0,    \
++                           ((imm) & (1 << 6)) ? (uint16_t) -1 : 0x0,    \
++                           ((imm) & (1 << 7)) ? (uint16_t) -1 : 0x0);   \
++        uint16x8_t _mask_vec = vld1q_u16(_mask);                        \
++        uint16x8_t __a = vreinterpretq_u16_m128i(_a);                   \
++        uint16x8_t __b = vreinterpretq_u16_m128i(_b); _sse2neon_return( \
++            vreinterpretq_m128i_u16(vbslq_u16(_mask_vec, __b, __a)));)
++
++// Blend packed double-precision (64-bit) floating-point elements from a and b
++// using control mask imm8, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_blend_pd
++#define _mm_blend_pd(a, b, imm)                                              \
++    _sse2neon_define2(                                                       \
++        __m128d, a, b,                                                       \
++        const uint64_t _mask[2] =                                            \
++            _sse2neon_init(((imm) & (1 << 0)) ? ~UINT64_C(0) : UINT64_C(0),  \
++                           ((imm) & (1 << 1)) ? ~UINT64_C(0) : UINT64_C(0)); \
++        uint64x2_t _mask_vec = vld1q_u64(_mask);                             \
++        uint64x2_t __a = vreinterpretq_u64_m128d(_a);                        \
++        uint64x2_t __b = vreinterpretq_u64_m128d(_b); _sse2neon_return(      \
++            vreinterpretq_m128d_u64(vbslq_u64(_mask_vec, __b, __a)));)
++
++// Blend packed single-precision (32-bit) floating-point elements from a and b
++// using mask, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_blend_ps
++FORCE_INLINE __m128 _mm_blend_ps(__m128 _a, __m128 _b, const char imm8)
++{
++    const uint32_t ALIGN_STRUCT(16)
++        data[4] = {((imm8) & (1 << 0)) ? UINT32_MAX : 0,
++                   ((imm8) & (1 << 1)) ? UINT32_MAX : 0,
++                   ((imm8) & (1 << 2)) ? UINT32_MAX : 0,
++                   ((imm8) & (1 << 3)) ? UINT32_MAX : 0};
++    uint32x4_t mask = vld1q_u32(data);
++    float32x4_t a = vreinterpretq_f32_m128(_a);
++    float32x4_t b = vreinterpretq_f32_m128(_b);
++    return vreinterpretq_m128_f32(vbslq_f32(mask, b, a));
++}
++
++// Blend packed 8-bit integers from a and b using mask, and store the results in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_blendv_epi8
++FORCE_INLINE __m128i _mm_blendv_epi8(__m128i _a, __m128i _b, __m128i _mask)
++{
++    // Use a signed shift right to create a mask with the sign bit
++    uint8x16_t mask =
++        vreinterpretq_u8_s8(vshrq_n_s8(vreinterpretq_s8_m128i(_mask), 7));
++    uint8x16_t a = vreinterpretq_u8_m128i(_a);
++    uint8x16_t b = vreinterpretq_u8_m128i(_b);
++    return vreinterpretq_m128i_u8(vbslq_u8(mask, b, a));
++}
++
++// Blend packed double-precision (64-bit) floating-point elements from a and b
++// using mask, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_blendv_pd
++FORCE_INLINE __m128d _mm_blendv_pd(__m128d _a, __m128d _b, __m128d _mask)
++{
++    uint64x2_t mask =
++        vreinterpretq_u64_s64(vshrq_n_s64(vreinterpretq_s64_m128d(_mask), 63));
++#if defined(__aarch64__) || defined(_M_ARM64)
++    float64x2_t a = vreinterpretq_f64_m128d(_a);
++    float64x2_t b = vreinterpretq_f64_m128d(_b);
++    return vreinterpretq_m128d_f64(vbslq_f64(mask, b, a));
++#else
++    uint64x2_t a = vreinterpretq_u64_m128d(_a);
++    uint64x2_t b = vreinterpretq_u64_m128d(_b);
++    return vreinterpretq_m128d_u64(vbslq_u64(mask, b, a));
++#endif
++}
++
++// Blend packed single-precision (32-bit) floating-point elements from a and b
++// using mask, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_blendv_ps
++FORCE_INLINE __m128 _mm_blendv_ps(__m128 _a, __m128 _b, __m128 _mask)
++{
++    // Use a signed shift right to create a mask with the sign bit
++    uint32x4_t mask =
++        vreinterpretq_u32_s32(vshrq_n_s32(vreinterpretq_s32_m128(_mask), 31));
++    float32x4_t a = vreinterpretq_f32_m128(_a);
++    float32x4_t b = vreinterpretq_f32_m128(_b);
++    return vreinterpretq_m128_f32(vbslq_f32(mask, b, a));
++}
++
++// Round the packed double-precision (64-bit) floating-point elements in a up
++// to an integer value, and store the results as packed double-precision
++// floating-point elements in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_ceil_pd
++FORCE_INLINE __m128d _mm_ceil_pd(__m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(vrndpq_f64(vreinterpretq_f64_m128d(a)));
++#else
++    double *f = (double *) &a;
++    return _mm_set_pd(ceil(f[1]), ceil(f[0]));
++#endif
++}
++
++// Round the packed single-precision (32-bit) floating-point elements in a up to
++// an integer value, and store the results as packed single-precision
++// floating-point elements in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_ceil_ps
++FORCE_INLINE __m128 _mm_ceil_ps(__m128 a)
++{
++#if (defined(__aarch64__) || defined(_M_ARM64)) || \
++    defined(__ARM_FEATURE_DIRECTED_ROUNDING)
++    return vreinterpretq_m128_f32(vrndpq_f32(vreinterpretq_f32_m128(a)));
++#else
++    float *f = (float *) &a;
++    return _mm_set_ps(ceilf(f[3]), ceilf(f[2]), ceilf(f[1]), ceilf(f[0]));
++#endif
++}
++
++// Round the lower double-precision (64-bit) floating-point element in b up to
++// an integer value, store the result as a double-precision floating-point
++// element in the lower element of dst, and copy the upper element from a to the
++// upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_ceil_sd
++FORCE_INLINE __m128d _mm_ceil_sd(__m128d a, __m128d b)
++{
++    return _mm_move_sd(a, _mm_ceil_pd(b));
++}
++
++// Round the lower single-precision (32-bit) floating-point element in b up to
++// an integer value, store the result as a single-precision floating-point
++// element in the lower element of dst, and copy the upper 3 packed elements
++// from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_ceil_ss
++FORCE_INLINE __m128 _mm_ceil_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_ceil_ps(b));
++}
++
++// Compare packed 64-bit integers in a and b for equality, and store the results
++// in dst
++FORCE_INLINE __m128i _mm_cmpeq_epi64(__m128i a, __m128i b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_u64(
++        vceqq_u64(vreinterpretq_u64_m128i(a), vreinterpretq_u64_m128i(b)));
++#else
++    // ARMv7 lacks vceqq_u64
++    // (a == b) -> (a_lo == b_lo) && (a_hi == b_hi)
++    uint32x4_t cmp =
++        vceqq_u32(vreinterpretq_u32_m128i(a), vreinterpretq_u32_m128i(b));
++    uint32x4_t swapped = vrev64q_u32(cmp);
++    return vreinterpretq_m128i_u32(vandq_u32(cmp, swapped));
++#endif
++}
++
++// Sign extend packed 16-bit integers in a to packed 32-bit integers, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepi16_epi32
++FORCE_INLINE __m128i _mm_cvtepi16_epi32(__m128i a)
++{
++    return vreinterpretq_m128i_s32(
++        vmovl_s16(vget_low_s16(vreinterpretq_s16_m128i(a))));
++}
++
++// Sign extend packed 16-bit integers in a to packed 64-bit integers, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepi16_epi64
++FORCE_INLINE __m128i _mm_cvtepi16_epi64(__m128i a)
++{
++    int16x8_t s16x8 = vreinterpretq_s16_m128i(a);     /* xxxx xxxx xxxx 0B0A */
++    int32x4_t s32x4 = vmovl_s16(vget_low_s16(s16x8)); /* 000x 000x 000B 000A */
++    int64x2_t s64x2 = vmovl_s32(vget_low_s32(s32x4)); /* 0000 000B 0000 000A */
++    return vreinterpretq_m128i_s64(s64x2);
++}
++
++// Sign extend packed 32-bit integers in a to packed 64-bit integers, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepi32_epi64
++FORCE_INLINE __m128i _mm_cvtepi32_epi64(__m128i a)
++{
++    return vreinterpretq_m128i_s64(
++        vmovl_s32(vget_low_s32(vreinterpretq_s32_m128i(a))));
++}
++
++// Sign extend packed 8-bit integers in a to packed 16-bit integers, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepi8_epi16
++FORCE_INLINE __m128i _mm_cvtepi8_epi16(__m128i a)
++{
++    int8x16_t s8x16 = vreinterpretq_s8_m128i(a);    /* xxxx xxxx xxxx DCBA */
++    int16x8_t s16x8 = vmovl_s8(vget_low_s8(s8x16)); /* 0x0x 0x0x 0D0C 0B0A */
++    return vreinterpretq_m128i_s16(s16x8);
++}
++
++// Sign extend packed 8-bit integers in a to packed 32-bit integers, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepi8_epi32
++FORCE_INLINE __m128i _mm_cvtepi8_epi32(__m128i a)
++{
++    int8x16_t s8x16 = vreinterpretq_s8_m128i(a);      /* xxxx xxxx xxxx DCBA */
++    int16x8_t s16x8 = vmovl_s8(vget_low_s8(s8x16));   /* 0x0x 0x0x 0D0C 0B0A */
++    int32x4_t s32x4 = vmovl_s16(vget_low_s16(s16x8)); /* 000D 000C 000B 000A */
++    return vreinterpretq_m128i_s32(s32x4);
++}
++
++// Sign extend packed 8-bit integers in the low 8 bytes of a to packed 64-bit
++// integers, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepi8_epi64
++FORCE_INLINE __m128i _mm_cvtepi8_epi64(__m128i a)
++{
++    int8x16_t s8x16 = vreinterpretq_s8_m128i(a);      /* xxxx xxxx xxxx xxBA */
++    int16x8_t s16x8 = vmovl_s8(vget_low_s8(s8x16));   /* 0x0x 0x0x 0x0x 0B0A */
++    int32x4_t s32x4 = vmovl_s16(vget_low_s16(s16x8)); /* 000x 000x 000B 000A */
++    int64x2_t s64x2 = vmovl_s32(vget_low_s32(s32x4)); /* 0000 000B 0000 000A */
++    return vreinterpretq_m128i_s64(s64x2);
++}
++
++// Zero extend packed unsigned 16-bit integers in a to packed 32-bit integers,
++// and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepu16_epi32
++FORCE_INLINE __m128i _mm_cvtepu16_epi32(__m128i a)
++{
++    return vreinterpretq_m128i_u32(
++        vmovl_u16(vget_low_u16(vreinterpretq_u16_m128i(a))));
++}
++
++// Zero extend packed unsigned 16-bit integers in a to packed 64-bit integers,
++// and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepu16_epi64
++FORCE_INLINE __m128i _mm_cvtepu16_epi64(__m128i a)
++{
++    uint16x8_t u16x8 = vreinterpretq_u16_m128i(a);     /* xxxx xxxx xxxx 0B0A */
++    uint32x4_t u32x4 = vmovl_u16(vget_low_u16(u16x8)); /* 000x 000x 000B 000A */
++    uint64x2_t u64x2 = vmovl_u32(vget_low_u32(u32x4)); /* 0000 000B 0000 000A */
++    return vreinterpretq_m128i_u64(u64x2);
++}
++
++// Zero extend packed unsigned 32-bit integers in a to packed 64-bit integers,
++// and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepu32_epi64
++FORCE_INLINE __m128i _mm_cvtepu32_epi64(__m128i a)
++{
++    return vreinterpretq_m128i_u64(
++        vmovl_u32(vget_low_u32(vreinterpretq_u32_m128i(a))));
++}
++
++// Zero extend packed unsigned 8-bit integers in a to packed 16-bit integers,
++// and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepu8_epi16
++FORCE_INLINE __m128i _mm_cvtepu8_epi16(__m128i a)
++{
++    uint8x16_t u8x16 = vreinterpretq_u8_m128i(a);    /* xxxx xxxx HGFE DCBA */
++    uint16x8_t u16x8 = vmovl_u8(vget_low_u8(u8x16)); /* 0H0G 0F0E 0D0C 0B0A */
++    return vreinterpretq_m128i_u16(u16x8);
++}
++
++// Zero extend packed unsigned 8-bit integers in a to packed 32-bit integers,
++// and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepu8_epi32
++FORCE_INLINE __m128i _mm_cvtepu8_epi32(__m128i a)
++{
++    uint8x16_t u8x16 = vreinterpretq_u8_m128i(a);      /* xxxx xxxx xxxx DCBA */
++    uint16x8_t u16x8 = vmovl_u8(vget_low_u8(u8x16));   /* 0x0x 0x0x 0D0C 0B0A */
++    uint32x4_t u32x4 = vmovl_u16(vget_low_u16(u16x8)); /* 000D 000C 000B 000A */
++    return vreinterpretq_m128i_u32(u32x4);
++}
++
++// Zero extend packed unsigned 8-bit integers in the low 8 bytes of a to packed
++// 64-bit integers, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepu8_epi64
++FORCE_INLINE __m128i _mm_cvtepu8_epi64(__m128i a)
++{
++    uint8x16_t u8x16 = vreinterpretq_u8_m128i(a);      /* xxxx xxxx xxxx xxBA */
++    uint16x8_t u16x8 = vmovl_u8(vget_low_u8(u8x16));   /* 0x0x 0x0x 0x0x 0B0A */
++    uint32x4_t u32x4 = vmovl_u16(vget_low_u16(u16x8)); /* 000x 000x 000B 000A */
++    uint64x2_t u64x2 = vmovl_u32(vget_low_u32(u32x4)); /* 0000 000B 0000 000A */
++    return vreinterpretq_m128i_u64(u64x2);
++}
++
++// Conditionally multiply the packed double-precision (64-bit) floating-point
++// elements in a and b using the high 4 bits in imm8, sum the four products, and
++// conditionally store the sum in dst using the low 4 bits of imm8.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_dp_pd
++FORCE_INLINE __m128d _mm_dp_pd(__m128d a, __m128d b, const int imm)
++{
++    // Generate mask value from constant immediate bit value
++    const int64_t bit0Mask = imm & 0x01 ? UINT64_MAX : 0;
++    const int64_t bit1Mask = imm & 0x02 ? UINT64_MAX : 0;
++#if !SSE2NEON_PRECISE_DP
++    const int64_t bit4Mask = imm & 0x10 ? UINT64_MAX : 0;
++    const int64_t bit5Mask = imm & 0x20 ? UINT64_MAX : 0;
++#endif
++    // Conditional multiplication
++#if !SSE2NEON_PRECISE_DP
++    __m128d mul = _mm_mul_pd(a, b);
++    const __m128d mulMask =
++        _mm_castsi128_pd(_mm_set_epi64x(bit5Mask, bit4Mask));
++    __m128d tmp = _mm_and_pd(mul, mulMask);
++#else
++#if defined(__aarch64__) || defined(_M_ARM64)
++    double d0 = (imm & 0x10) ? vgetq_lane_f64(vreinterpretq_f64_m128d(a), 0) *
++                                   vgetq_lane_f64(vreinterpretq_f64_m128d(b), 0)
++                             : 0;
++    double d1 = (imm & 0x20) ? vgetq_lane_f64(vreinterpretq_f64_m128d(a), 1) *
++                                   vgetq_lane_f64(vreinterpretq_f64_m128d(b), 1)
++                             : 0;
++#else
++    double d0 = (imm & 0x10) ? ((double *) &a)[0] * ((double *) &b)[0] : 0;
++    double d1 = (imm & 0x20) ? ((double *) &a)[1] * ((double *) &b)[1] : 0;
++#endif
++    __m128d tmp = _mm_set_pd(d1, d0);
++#endif
++    // Sum the products
++#if defined(__aarch64__) || defined(_M_ARM64)
++    double sum = vpaddd_f64(vreinterpretq_f64_m128d(tmp));
++#else
++    double sum = *((double *) &tmp) + *(((double *) &tmp) + 1);
++#endif
++    // Conditionally store the sum
++    const __m128d sumMask =
++        _mm_castsi128_pd(_mm_set_epi64x(bit1Mask, bit0Mask));
++    __m128d res = _mm_and_pd(_mm_set_pd1(sum), sumMask);
++    return res;
++}
++
++// Conditionally multiply the packed single-precision (32-bit) floating-point
++// elements in a and b using the high 4 bits in imm8, sum the four products,
++// and conditionally store the sum in dst using the low 4 bits of imm.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_dp_ps
++FORCE_INLINE __m128 _mm_dp_ps(__m128 a, __m128 b, const int imm)
++{
++    float32x4_t elementwise_prod = _mm_mul_ps(a, b);
++
++#if defined(__aarch64__) || defined(_M_ARM64)
++    /* shortcuts */
++    if (imm == 0xFF) {
++        return _mm_set1_ps(vaddvq_f32(elementwise_prod));
++    }
++
++    if ((imm & 0x0F) == 0x0F) {
++        if (!(imm & (1 << 4)))
++            elementwise_prod = vsetq_lane_f32(0.0f, elementwise_prod, 0);
++        if (!(imm & (1 << 5)))
++            elementwise_prod = vsetq_lane_f32(0.0f, elementwise_prod, 1);
++        if (!(imm & (1 << 6)))
++            elementwise_prod = vsetq_lane_f32(0.0f, elementwise_prod, 2);
++        if (!(imm & (1 << 7)))
++            elementwise_prod = vsetq_lane_f32(0.0f, elementwise_prod, 3);
++
++        return _mm_set1_ps(vaddvq_f32(elementwise_prod));
++    }
++#endif
++
++    float s = 0.0f;
++
++    if (imm & (1 << 4))
++        s += vgetq_lane_f32(elementwise_prod, 0);
++    if (imm & (1 << 5))
++        s += vgetq_lane_f32(elementwise_prod, 1);
++    if (imm & (1 << 6))
++        s += vgetq_lane_f32(elementwise_prod, 2);
++    if (imm & (1 << 7))
++        s += vgetq_lane_f32(elementwise_prod, 3);
++
++    const float32_t res[4] = {
++        (imm & 0x1) ? s : 0.0f,
++        (imm & 0x2) ? s : 0.0f,
++        (imm & 0x4) ? s : 0.0f,
++        (imm & 0x8) ? s : 0.0f,
++    };
++    return vreinterpretq_m128_f32(vld1q_f32(res));
++}
++
++// Extract a 32-bit integer from a, selected with imm8, and store the result in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_extract_epi32
++// FORCE_INLINE int _mm_extract_epi32(__m128i a, __constrange(0,4) int imm)
++#define _mm_extract_epi32(a, imm) \
++    vgetq_lane_s32(vreinterpretq_s32_m128i(a), (imm))
++
++// Extract a 64-bit integer from a, selected with imm8, and store the result in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_extract_epi64
++// FORCE_INLINE __int64 _mm_extract_epi64(__m128i a, __constrange(0,2) int imm)
++#define _mm_extract_epi64(a, imm) \
++    vgetq_lane_s64(vreinterpretq_s64_m128i(a), (imm))
++
++// Extract an 8-bit integer from a, selected with imm8, and store the result in
++// the lower element of dst. FORCE_INLINE int _mm_extract_epi8(__m128i a,
++// __constrange(0,16) int imm)
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_extract_epi8
++#define _mm_extract_epi8(a, imm) vgetq_lane_u8(vreinterpretq_u8_m128i(a), (imm))
++
++// Extracts the selected single-precision (32-bit) floating-point from a.
++// FORCE_INLINE int _mm_extract_ps(__m128 a, __constrange(0,4) int imm)
++#define _mm_extract_ps(a, imm) vgetq_lane_s32(vreinterpretq_s32_m128(a), (imm))
++
++// Round the packed double-precision (64-bit) floating-point elements in a down
++// to an integer value, and store the results as packed double-precision
++// floating-point elements in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_floor_pd
++FORCE_INLINE __m128d _mm_floor_pd(__m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(vrndmq_f64(vreinterpretq_f64_m128d(a)));
++#else
++    double *f = (double *) &a;
++    return _mm_set_pd(floor(f[1]), floor(f[0]));
++#endif
++}
++
++// Round the packed single-precision (32-bit) floating-point elements in a down
++// to an integer value, and store the results as packed single-precision
++// floating-point elements in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_floor_ps
++FORCE_INLINE __m128 _mm_floor_ps(__m128 a)
++{
++#if (defined(__aarch64__) || defined(_M_ARM64)) || \
++    defined(__ARM_FEATURE_DIRECTED_ROUNDING)
++    return vreinterpretq_m128_f32(vrndmq_f32(vreinterpretq_f32_m128(a)));
++#else
++    float *f = (float *) &a;
++    return _mm_set_ps(floorf(f[3]), floorf(f[2]), floorf(f[1]), floorf(f[0]));
++#endif
++}
++
++// Round the lower double-precision (64-bit) floating-point element in b down to
++// an integer value, store the result as a double-precision floating-point
++// element in the lower element of dst, and copy the upper element from a to the
++// upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_floor_sd
++FORCE_INLINE __m128d _mm_floor_sd(__m128d a, __m128d b)
++{
++    return _mm_move_sd(a, _mm_floor_pd(b));
++}
++
++// Round the lower single-precision (32-bit) floating-point element in b down to
++// an integer value, store the result as a single-precision floating-point
++// element in the lower element of dst, and copy the upper 3 packed elements
++// from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_floor_ss
++FORCE_INLINE __m128 _mm_floor_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_floor_ps(b));
++}
++
++// Copy a to dst, and insert the 32-bit integer i into dst at the location
++// specified by imm8.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_insert_epi32
++// FORCE_INLINE __m128i _mm_insert_epi32(__m128i a, int b,
++//                                       __constrange(0,4) int imm)
++#define _mm_insert_epi32(a, b, imm) \
++    vreinterpretq_m128i_s32(        \
++        vsetq_lane_s32((b), vreinterpretq_s32_m128i(a), (imm)))
++
++// Copy a to dst, and insert the 64-bit integer i into dst at the location
++// specified by imm8.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_insert_epi64
++// FORCE_INLINE __m128i _mm_insert_epi64(__m128i a, __int64 b,
++//                                       __constrange(0,2) int imm)
++#define _mm_insert_epi64(a, b, imm) \
++    vreinterpretq_m128i_s64(        \
++        vsetq_lane_s64((b), vreinterpretq_s64_m128i(a), (imm)))
++
++// Copy a to dst, and insert the lower 8-bit integer from i into dst at the
++// location specified by imm8.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_insert_epi8
++// FORCE_INLINE __m128i _mm_insert_epi8(__m128i a, int b,
++//                                      __constrange(0,16) int imm)
++#define _mm_insert_epi8(a, b, imm) \
++    vreinterpretq_m128i_s8(vsetq_lane_s8((b), vreinterpretq_s8_m128i(a), (imm)))
++
++// Copy a to tmp, then insert a single-precision (32-bit) floating-point
++// element from b into tmp using the control in imm8. Store tmp to dst using
++// the mask in imm8 (elements are zeroed out when the corresponding bit is set).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=insert_ps
++#define _mm_insert_ps(a, b, imm8)                                            \
++    _sse2neon_define2(                                                       \
++        __m128, a, b,                                                        \
++        float32x4_t tmp1 =                                                   \
++            vsetq_lane_f32(vgetq_lane_f32(_b, (imm8 >> 6) & 0x3),            \
++                           vreinterpretq_f32_m128(_a), 0);                   \
++        float32x4_t tmp2 =                                                   \
++            vsetq_lane_f32(vgetq_lane_f32(tmp1, 0),                          \
++                           vreinterpretq_f32_m128(_a), ((imm8 >> 4) & 0x3)); \
++        const uint32_t data[4] =                                             \
++            _sse2neon_init(((imm8) & (1 << 0)) ? UINT32_MAX : 0,             \
++                           ((imm8) & (1 << 1)) ? UINT32_MAX : 0,             \
++                           ((imm8) & (1 << 2)) ? UINT32_MAX : 0,             \
++                           ((imm8) & (1 << 3)) ? UINT32_MAX : 0);            \
++        uint32x4_t mask = vld1q_u32(data);                                   \
++        float32x4_t all_zeros = vdupq_n_f32(0);                              \
++                                                                             \
++        _sse2neon_return(vreinterpretq_m128_f32(                             \
++            vbslq_f32(mask, all_zeros, vreinterpretq_f32_m128(tmp2))));)
++
++// Compare packed signed 32-bit integers in a and b, and store packed maximum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_epi32
++FORCE_INLINE __m128i _mm_max_epi32(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s32(
++        vmaxq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++}
++
++// Compare packed signed 8-bit integers in a and b, and store packed maximum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_epi8
++FORCE_INLINE __m128i _mm_max_epi8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s8(
++        vmaxq_s8(vreinterpretq_s8_m128i(a), vreinterpretq_s8_m128i(b)));
++}
++
++// Compare packed unsigned 16-bit integers in a and b, and store packed maximum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_epu16
++FORCE_INLINE __m128i _mm_max_epu16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u16(
++        vmaxq_u16(vreinterpretq_u16_m128i(a), vreinterpretq_u16_m128i(b)));
++}
++
++// Compare packed unsigned 32-bit integers in a and b, and store packed maximum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_epu32
++FORCE_INLINE __m128i _mm_max_epu32(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u32(
++        vmaxq_u32(vreinterpretq_u32_m128i(a), vreinterpretq_u32_m128i(b)));
++}
++
++// Compare packed signed 32-bit integers in a and b, and store packed minimum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_min_epi32
++FORCE_INLINE __m128i _mm_min_epi32(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s32(
++        vminq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++}
++
++// Compare packed signed 8-bit integers in a and b, and store packed minimum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_min_epi8
++FORCE_INLINE __m128i _mm_min_epi8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s8(
++        vminq_s8(vreinterpretq_s8_m128i(a), vreinterpretq_s8_m128i(b)));
++}
++
++// Compare packed unsigned 16-bit integers in a and b, and store packed minimum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_min_epu16
++FORCE_INLINE __m128i _mm_min_epu16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u16(
++        vminq_u16(vreinterpretq_u16_m128i(a), vreinterpretq_u16_m128i(b)));
++}
++
++// Compare packed unsigned 32-bit integers in a and b, and store packed minimum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_epu32
++FORCE_INLINE __m128i _mm_min_epu32(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u32(
++        vminq_u32(vreinterpretq_u32_m128i(a), vreinterpretq_u32_m128i(b)));
++}
++
++// Horizontally compute the minimum amongst the packed unsigned 16-bit integers
++// in a, store the minimum and index in dst, and zero the remaining bits in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_minpos_epu16
++FORCE_INLINE __m128i _mm_minpos_epu16(__m128i a)
++{
++    __m128i dst;
++    uint16_t min, idx = 0;
++#if defined(__aarch64__) || defined(_M_ARM64)
++    // Find the minimum value
++    min = vminvq_u16(vreinterpretq_u16_m128i(a));
++
++    // Get the index of the minimum value
++    static const uint16_t idxv[] = {0, 1, 2, 3, 4, 5, 6, 7};
++    uint16x8_t minv = vdupq_n_u16(min);
++    uint16x8_t cmeq = vceqq_u16(minv, vreinterpretq_u16_m128i(a));
++    idx = vminvq_u16(vornq_u16(vld1q_u16(idxv), cmeq));
++#else
++    // Find the minimum value
++    __m64 tmp;
++    tmp = vreinterpret_m64_u16(
++        vmin_u16(vget_low_u16(vreinterpretq_u16_m128i(a)),
++                 vget_high_u16(vreinterpretq_u16_m128i(a))));
++    tmp = vreinterpret_m64_u16(
++        vpmin_u16(vreinterpret_u16_m64(tmp), vreinterpret_u16_m64(tmp)));
++    tmp = vreinterpret_m64_u16(
++        vpmin_u16(vreinterpret_u16_m64(tmp), vreinterpret_u16_m64(tmp)));
++    min = vget_lane_u16(vreinterpret_u16_m64(tmp), 0);
++    // Get the index of the minimum value
++    int i;
++    for (i = 0; i < 8; i++) {
++        if (min == vgetq_lane_u16(vreinterpretq_u16_m128i(a), 0)) {
++            idx = (uint16_t) i;
++            break;
++        }
++        a = _mm_srli_si128(a, 2);
++    }
++#endif
++    // Generate result
++    dst = _mm_setzero_si128();
++    dst = vreinterpretq_m128i_u16(
++        vsetq_lane_u16(min, vreinterpretq_u16_m128i(dst), 0));
++    dst = vreinterpretq_m128i_u16(
++        vsetq_lane_u16(idx, vreinterpretq_u16_m128i(dst), 1));
++    return dst;
++}
++
++// Compute the sum of absolute differences (SADs) of quadruplets of unsigned
++// 8-bit integers in a compared to those in b, and store the 16-bit results in
++// dst. Eight SADs are performed using one quadruplet from b and eight
++// quadruplets from a. One quadruplet is selected from b starting at on the
++// offset specified in imm8. Eight quadruplets are formed from sequential 8-bit
++// integers selected from a starting at the offset specified in imm8.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mpsadbw_epu8
++FORCE_INLINE __m128i _mm_mpsadbw_epu8(__m128i a, __m128i b, const int imm)
++{
++    uint8x16_t _a, _b;
++
++    switch (imm & 0x4) {
++    case 0:
++        // do nothing
++        _a = vreinterpretq_u8_m128i(a);
++        break;
++    case 4:
++        _a = vreinterpretq_u8_u32(vextq_u32(vreinterpretq_u32_m128i(a),
++                                            vreinterpretq_u32_m128i(a), 1));
++        break;
++    default:
++#if defined(__GNUC__) || defined(__clang__)
++        __builtin_unreachable();
++#elif defined(_MSC_VER)
++        __assume(0);
++#endif
++        break;
++    }
++
++    switch (imm & 0x3) {
++    case 0:
++        _b = vreinterpretq_u8_u32(
++            vdupq_n_u32(vgetq_lane_u32(vreinterpretq_u32_m128i(b), 0)));
++        break;
++    case 1:
++        _b = vreinterpretq_u8_u32(
++            vdupq_n_u32(vgetq_lane_u32(vreinterpretq_u32_m128i(b), 1)));
++        break;
++    case 2:
++        _b = vreinterpretq_u8_u32(
++            vdupq_n_u32(vgetq_lane_u32(vreinterpretq_u32_m128i(b), 2)));
++        break;
++    case 3:
++        _b = vreinterpretq_u8_u32(
++            vdupq_n_u32(vgetq_lane_u32(vreinterpretq_u32_m128i(b), 3)));
++        break;
++    default:
++#if defined(__GNUC__) || defined(__clang__)
++        __builtin_unreachable();
++#elif defined(_MSC_VER)
++        __assume(0);
++#endif
++        break;
++    }
++
++    int16x8_t c04, c15, c26, c37;
++    uint8x8_t low_b = vget_low_u8(_b);
++    c04 = vreinterpretq_s16_u16(vabdl_u8(vget_low_u8(_a), low_b));
++    uint8x16_t _a_1 = vextq_u8(_a, _a, 1);
++    c15 = vreinterpretq_s16_u16(vabdl_u8(vget_low_u8(_a_1), low_b));
++    uint8x16_t _a_2 = vextq_u8(_a, _a, 2);
++    c26 = vreinterpretq_s16_u16(vabdl_u8(vget_low_u8(_a_2), low_b));
++    uint8x16_t _a_3 = vextq_u8(_a, _a, 3);
++    c37 = vreinterpretq_s16_u16(vabdl_u8(vget_low_u8(_a_3), low_b));
++#if defined(__aarch64__) || defined(_M_ARM64)
++    // |0|4|2|6|
++    c04 = vpaddq_s16(c04, c26);
++    // |1|5|3|7|
++    c15 = vpaddq_s16(c15, c37);
++
++    int32x4_t trn1_c =
++        vtrn1q_s32(vreinterpretq_s32_s16(c04), vreinterpretq_s32_s16(c15));
++    int32x4_t trn2_c =
++        vtrn2q_s32(vreinterpretq_s32_s16(c04), vreinterpretq_s32_s16(c15));
++    return vreinterpretq_m128i_s16(vpaddq_s16(vreinterpretq_s16_s32(trn1_c),
++                                              vreinterpretq_s16_s32(trn2_c)));
++#else
++    int16x4_t c01, c23, c45, c67;
++    c01 = vpadd_s16(vget_low_s16(c04), vget_low_s16(c15));
++    c23 = vpadd_s16(vget_low_s16(c26), vget_low_s16(c37));
++    c45 = vpadd_s16(vget_high_s16(c04), vget_high_s16(c15));
++    c67 = vpadd_s16(vget_high_s16(c26), vget_high_s16(c37));
++
++    return vreinterpretq_m128i_s16(
++        vcombine_s16(vpadd_s16(c01, c23), vpadd_s16(c45, c67)));
++#endif
++}
++
++// Multiply the low signed 32-bit integers from each packed 64-bit element in
++// a and b, and store the signed 64-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mul_epi32
++FORCE_INLINE __m128i _mm_mul_epi32(__m128i a, __m128i b)
++{
++    // vmull_s32 upcasts instead of masking, so we downcast.
++    int32x2_t a_lo = vmovn_s64(vreinterpretq_s64_m128i(a));
++    int32x2_t b_lo = vmovn_s64(vreinterpretq_s64_m128i(b));
++    return vreinterpretq_m128i_s64(vmull_s32(a_lo, b_lo));
++}
++
++// Multiply the packed 32-bit integers in a and b, producing intermediate 64-bit
++// integers, and store the low 32 bits of the intermediate integers in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mullo_epi32
++FORCE_INLINE __m128i _mm_mullo_epi32(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s32(
++        vmulq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++}
++
++// Convert packed signed 32-bit integers from a and b to packed 16-bit integers
++// using unsigned saturation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_packus_epi32
++FORCE_INLINE __m128i _mm_packus_epi32(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u16(
++        vcombine_u16(vqmovun_s32(vreinterpretq_s32_m128i(a)),
++                     vqmovun_s32(vreinterpretq_s32_m128i(b))));
++}
++
++// Round the packed double-precision (64-bit) floating-point elements in a using
++// the rounding parameter, and store the results as packed double-precision
++// floating-point elements in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_round_pd
++FORCE_INLINE __m128d _mm_round_pd(__m128d a, int rounding)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    switch (rounding) {
++    case (_MM_FROUND_TO_NEAREST_INT | _MM_FROUND_NO_EXC):
++        return vreinterpretq_m128d_f64(vrndnq_f64(vreinterpretq_f64_m128d(a)));
++    case (_MM_FROUND_TO_NEG_INF | _MM_FROUND_NO_EXC):
++        return _mm_floor_pd(a);
++    case (_MM_FROUND_TO_POS_INF | _MM_FROUND_NO_EXC):
++        return _mm_ceil_pd(a);
++    case (_MM_FROUND_TO_ZERO | _MM_FROUND_NO_EXC):
++        return vreinterpretq_m128d_f64(vrndq_f64(vreinterpretq_f64_m128d(a)));
++    default:  //_MM_FROUND_CUR_DIRECTION
++        return vreinterpretq_m128d_f64(vrndiq_f64(vreinterpretq_f64_m128d(a)));
++    }
++#else
++    double *v_double = (double *) &a;
++
++    if (rounding == (_MM_FROUND_TO_NEAREST_INT | _MM_FROUND_NO_EXC) ||
++        (rounding == _MM_FROUND_CUR_DIRECTION &&
++         _MM_GET_ROUNDING_MODE() == _MM_ROUND_NEAREST)) {
++        double res[2], tmp;
++        for (int i = 0; i < 2; i++) {
++            tmp = (v_double[i] < 0) ? -v_double[i] : v_double[i];
++            double roundDown = floor(tmp);  // Round down value
++            double roundUp = ceil(tmp);     // Round up value
++            double diffDown = tmp - roundDown;
++            double diffUp = roundUp - tmp;
++            if (diffDown < diffUp) {
++                /* If it's closer to the round down value, then use it */
++                res[i] = roundDown;
++            } else if (diffDown > diffUp) {
++                /* If it's closer to the round up value, then use it */
++                res[i] = roundUp;
++            } else {
++                /* If it's equidistant between round up and round down value,
++                 * pick the one which is an even number */
++                double half = roundDown / 2;
++                if (half != floor(half)) {
++                    /* If the round down value is odd, return the round up value
++                     */
++                    res[i] = roundUp;
++                } else {
++                    /* If the round up value is odd, return the round down value
++                     */
++                    res[i] = roundDown;
++                }
++            }
++            res[i] = (v_double[i] < 0) ? -res[i] : res[i];
++        }
++        return _mm_set_pd(res[1], res[0]);
++    } else if (rounding == (_MM_FROUND_TO_NEG_INF | _MM_FROUND_NO_EXC) ||
++               (rounding == _MM_FROUND_CUR_DIRECTION &&
++                _MM_GET_ROUNDING_MODE() == _MM_ROUND_DOWN)) {
++        return _mm_floor_pd(a);
++    } else if (rounding == (_MM_FROUND_TO_POS_INF | _MM_FROUND_NO_EXC) ||
++               (rounding == _MM_FROUND_CUR_DIRECTION &&
++                _MM_GET_ROUNDING_MODE() == _MM_ROUND_UP)) {
++        return _mm_ceil_pd(a);
++    }
++    return _mm_set_pd(v_double[1] > 0 ? floor(v_double[1]) : ceil(v_double[1]),
++                      v_double[0] > 0 ? floor(v_double[0]) : ceil(v_double[0]));
++#endif
++}
++
++// Round the packed single-precision (32-bit) floating-point elements in a using
++// the rounding parameter, and store the results as packed single-precision
++// floating-point elements in dst.
++// software.intel.com/sites/landingpage/IntrinsicsGuide/#text=_mm_round_ps
++FORCE_INLINE __m128 _mm_round_ps(__m128 a, int rounding)
++{
++#if (defined(__aarch64__) || defined(_M_ARM64)) || \
++    defined(__ARM_FEATURE_DIRECTED_ROUNDING)
++    switch (rounding) {
++    case (_MM_FROUND_TO_NEAREST_INT | _MM_FROUND_NO_EXC):
++        return vreinterpretq_m128_f32(vrndnq_f32(vreinterpretq_f32_m128(a)));
++    case (_MM_FROUND_TO_NEG_INF | _MM_FROUND_NO_EXC):
++        return _mm_floor_ps(a);
++    case (_MM_FROUND_TO_POS_INF | _MM_FROUND_NO_EXC):
++        return _mm_ceil_ps(a);
++    case (_MM_FROUND_TO_ZERO | _MM_FROUND_NO_EXC):
++        return vreinterpretq_m128_f32(vrndq_f32(vreinterpretq_f32_m128(a)));
++    default:  //_MM_FROUND_CUR_DIRECTION
++        return vreinterpretq_m128_f32(vrndiq_f32(vreinterpretq_f32_m128(a)));
++    }
++#else
++    float *v_float = (float *) &a;
++
++    if (rounding == (_MM_FROUND_TO_NEAREST_INT | _MM_FROUND_NO_EXC) ||
++        (rounding == _MM_FROUND_CUR_DIRECTION &&
++         _MM_GET_ROUNDING_MODE() == _MM_ROUND_NEAREST)) {
++        uint32x4_t signmask = vdupq_n_u32(0x80000000);
++        float32x4_t half = vbslq_f32(signmask, vreinterpretq_f32_m128(a),
++                                     vdupq_n_f32(0.5f)); /* +/- 0.5 */
++        int32x4_t r_normal = vcvtq_s32_f32(vaddq_f32(
++            vreinterpretq_f32_m128(a), half)); /* round to integer: [a + 0.5]*/
++        int32x4_t r_trunc = vcvtq_s32_f32(
++            vreinterpretq_f32_m128(a)); /* truncate to integer: [a] */
++        int32x4_t plusone = vreinterpretq_s32_u32(vshrq_n_u32(
++            vreinterpretq_u32_s32(vnegq_s32(r_trunc)), 31)); /* 1 or 0 */
++        int32x4_t r_even = vbicq_s32(vaddq_s32(r_trunc, plusone),
++                                     vdupq_n_s32(1)); /* ([a] + {0,1}) & ~1 */
++        float32x4_t delta = vsubq_f32(
++            vreinterpretq_f32_m128(a),
++            vcvtq_f32_s32(r_trunc)); /* compute delta: delta = (a - [a]) */
++        uint32x4_t is_delta_half =
++            vceqq_f32(delta, half); /* delta == +/- 0.5 */
++        return vreinterpretq_m128_f32(
++            vcvtq_f32_s32(vbslq_s32(is_delta_half, r_even, r_normal)));
++    } else if (rounding == (_MM_FROUND_TO_NEG_INF | _MM_FROUND_NO_EXC) ||
++               (rounding == _MM_FROUND_CUR_DIRECTION &&
++                _MM_GET_ROUNDING_MODE() == _MM_ROUND_DOWN)) {
++        return _mm_floor_ps(a);
++    } else if (rounding == (_MM_FROUND_TO_POS_INF | _MM_FROUND_NO_EXC) ||
++               (rounding == _MM_FROUND_CUR_DIRECTION &&
++                _MM_GET_ROUNDING_MODE() == _MM_ROUND_UP)) {
++        return _mm_ceil_ps(a);
++    }
++    return _mm_set_ps(v_float[3] > 0 ? floorf(v_float[3]) : ceilf(v_float[3]),
++                      v_float[2] > 0 ? floorf(v_float[2]) : ceilf(v_float[2]),
++                      v_float[1] > 0 ? floorf(v_float[1]) : ceilf(v_float[1]),
++                      v_float[0] > 0 ? floorf(v_float[0]) : ceilf(v_float[0]));
++#endif
++}
++
++// Round the lower double-precision (64-bit) floating-point element in b using
++// the rounding parameter, store the result as a double-precision floating-point
++// element in the lower element of dst, and copy the upper element from a to the
++// upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_round_sd
++FORCE_INLINE __m128d _mm_round_sd(__m128d a, __m128d b, int rounding)
++{
++    return _mm_move_sd(a, _mm_round_pd(b, rounding));
++}
++
++// Round the lower single-precision (32-bit) floating-point element in b using
++// the rounding parameter, store the result as a single-precision floating-point
++// element in the lower element of dst, and copy the upper 3 packed elements
++// from a to the upper elements of dst. Rounding is done according to the
++// rounding[3:0] parameter, which can be one of:
++//     (_MM_FROUND_TO_NEAREST_INT |_MM_FROUND_NO_EXC) // round to nearest, and
++//     suppress exceptions
++//     (_MM_FROUND_TO_NEG_INF |_MM_FROUND_NO_EXC)     // round down, and
++//     suppress exceptions
++//     (_MM_FROUND_TO_POS_INF |_MM_FROUND_NO_EXC)     // round up, and suppress
++//     exceptions
++//     (_MM_FROUND_TO_ZERO |_MM_FROUND_NO_EXC)        // truncate, and suppress
++//     exceptions _MM_FROUND_CUR_DIRECTION // use MXCSR.RC; see
++//     _MM_SET_ROUNDING_MODE
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_round_ss
++FORCE_INLINE __m128 _mm_round_ss(__m128 a, __m128 b, int rounding)
++{
++    return _mm_move_ss(a, _mm_round_ps(b, rounding));
++}
++
++// Load 128-bits of integer data from memory into dst using a non-temporal
++// memory hint. mem_addr must be aligned on a 16-byte boundary or a
++// general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_stream_load_si128
++FORCE_INLINE __m128i _mm_stream_load_si128(__m128i *p)
++{
++#if __has_builtin(__builtin_nontemporal_store)
++    return __builtin_nontemporal_load(p);
++#else
++    return vreinterpretq_m128i_s64(vld1q_s64((int64_t *) p));
++#endif
++}
++
++// Compute the bitwise NOT of a and then AND with a 128-bit vector containing
++// all 1's, and return 1 if the result is zero, otherwise return 0.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_test_all_ones
++FORCE_INLINE int _mm_test_all_ones(__m128i a)
++{
++    return (uint64_t) (vgetq_lane_s64(a, 0) & vgetq_lane_s64(a, 1)) ==
++           ~(uint64_t) 0;
++}
++
++// Compute the bitwise AND of 128 bits (representing integer data) in a and
++// mask, and return 1 if the result is zero, otherwise return 0.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_test_all_zeros
++FORCE_INLINE int _mm_test_all_zeros(__m128i a, __m128i mask)
++{
++    int64x2_t a_and_mask =
++        vandq_s64(vreinterpretq_s64_m128i(a), vreinterpretq_s64_m128i(mask));
++    return !(vgetq_lane_s64(a_and_mask, 0) | vgetq_lane_s64(a_and_mask, 1));
++}
++
++// Compute the bitwise AND of 128 bits (representing integer data) in a and
++// mask, and set ZF to 1 if the result is zero, otherwise set ZF to 0. Compute
++// the bitwise NOT of a and then AND with mask, and set CF to 1 if the result is
++// zero, otherwise set CF to 0. Return 1 if both the ZF and CF values are zero,
++// otherwise return 0.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=mm_test_mix_ones_zero
++// Note: Argument names may be wrong in the Intel intrinsics guide.
++FORCE_INLINE int _mm_test_mix_ones_zeros(__m128i a, __m128i mask)
++{
++    uint64x2_t v = vreinterpretq_u64_m128i(a);
++    uint64x2_t m = vreinterpretq_u64_m128i(mask);
++
++    // find ones (set-bits) and zeros (clear-bits) under clip mask
++    uint64x2_t ones = vandq_u64(m, v);
++    uint64x2_t zeros = vbicq_u64(m, v);
++
++    // If both 128-bit variables are populated (non-zero) then return 1.
++    // For comparision purposes, first compact each var down to 32-bits.
++    uint32x2_t reduced = vpmax_u32(vqmovn_u64(ones), vqmovn_u64(zeros));
++
++    // if folding minimum is non-zero then both vars must be non-zero
++    return (vget_lane_u32(vpmin_u32(reduced, reduced), 0) != 0);
++}
++
++// Compute the bitwise AND of 128 bits (representing integer data) in a and b,
++// and set ZF to 1 if the result is zero, otherwise set ZF to 0. Compute the
++// bitwise NOT of a and then AND with b, and set CF to 1 if the result is zero,
++// otherwise set CF to 0. Return the CF value.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_testc_si128
++FORCE_INLINE int _mm_testc_si128(__m128i a, __m128i b)
++{
++    int64x2_t s64 =
++        vbicq_s64(vreinterpretq_s64_m128i(b), vreinterpretq_s64_m128i(a));
++    return !(vgetq_lane_s64(s64, 0) | vgetq_lane_s64(s64, 1));
++}
++
++// Compute the bitwise AND of 128 bits (representing integer data) in a and b,
++// and set ZF to 1 if the result is zero, otherwise set ZF to 0. Compute the
++// bitwise NOT of a and then AND with b, and set CF to 1 if the result is zero,
++// otherwise set CF to 0. Return 1 if both the ZF and CF values are zero,
++// otherwise return 0.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_testnzc_si128
++#define _mm_testnzc_si128(a, b) _mm_test_mix_ones_zeros(a, b)
++
++// Compute the bitwise AND of 128 bits (representing integer data) in a and b,
++// and set ZF to 1 if the result is zero, otherwise set ZF to 0. Compute the
++// bitwise NOT of a and then AND with b, and set CF to 1 if the result is zero,
++// otherwise set CF to 0. Return the ZF value.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_testz_si128
++FORCE_INLINE int _mm_testz_si128(__m128i a, __m128i b)
++{
++    int64x2_t s64 =
++        vandq_s64(vreinterpretq_s64_m128i(a), vreinterpretq_s64_m128i(b));
++    return !(vgetq_lane_s64(s64, 0) | vgetq_lane_s64(s64, 1));
++}
++
++/* SSE4.2 */
++
++static const uint16_t ALIGN_STRUCT(16) _sse2neon_cmpestr_mask16b[8] = {
++    0x01, 0x02, 0x04, 0x08, 0x10, 0x20, 0x40, 0x80,
++};
++static const uint8_t ALIGN_STRUCT(16) _sse2neon_cmpestr_mask8b[16] = {
++    0x01, 0x02, 0x04, 0x08, 0x10, 0x20, 0x40, 0x80,
++    0x01, 0x02, 0x04, 0x08, 0x10, 0x20, 0x40, 0x80,
++};
++
++/* specify the source data format */
++#define _SIDD_UBYTE_OPS 0x00 /* unsigned 8-bit characters */
++#define _SIDD_UWORD_OPS 0x01 /* unsigned 16-bit characters */
++#define _SIDD_SBYTE_OPS 0x02 /* signed 8-bit characters */
++#define _SIDD_SWORD_OPS 0x03 /* signed 16-bit characters */
++
++/* specify the comparison operation */
++#define _SIDD_CMP_EQUAL_ANY 0x00     /* compare equal any: strchr */
++#define _SIDD_CMP_RANGES 0x04        /* compare ranges */
++#define _SIDD_CMP_EQUAL_EACH 0x08    /* compare equal each: strcmp */
++#define _SIDD_CMP_EQUAL_ORDERED 0x0C /* compare equal ordered */
++
++/* specify the polarity */
++#define _SIDD_POSITIVE_POLARITY 0x00
++#define _SIDD_MASKED_POSITIVE_POLARITY 0x20
++#define _SIDD_NEGATIVE_POLARITY 0x10 /* negate results */
++#define _SIDD_MASKED_NEGATIVE_POLARITY \
++    0x30 /* negate results only before end of string */
++
++/* specify the output selection in _mm_cmpXstri */
++#define _SIDD_LEAST_SIGNIFICANT 0x00
++#define _SIDD_MOST_SIGNIFICANT 0x40
++
++/* specify the output selection in _mm_cmpXstrm */
++#define _SIDD_BIT_MASK 0x00
++#define _SIDD_UNIT_MASK 0x40
++
++/* Pattern Matching for C macros.
++ * https://github.com/pfultz2/Cloak/wiki/C-Preprocessor-tricks,-tips,-and-idioms
++ */
++
++/* catenate */
++#define SSE2NEON_PRIMITIVE_CAT(a, ...) a##__VA_ARGS__
++#define SSE2NEON_CAT(a, b) SSE2NEON_PRIMITIVE_CAT(a, b)
++
++#define SSE2NEON_IIF(c) SSE2NEON_PRIMITIVE_CAT(SSE2NEON_IIF_, c)
++/* run the 2nd parameter */
++#define SSE2NEON_IIF_0(t, ...) __VA_ARGS__
++/* run the 1st parameter */
++#define SSE2NEON_IIF_1(t, ...) t
++
++#define SSE2NEON_COMPL(b) SSE2NEON_PRIMITIVE_CAT(SSE2NEON_COMPL_, b)
++#define SSE2NEON_COMPL_0 1
++#define SSE2NEON_COMPL_1 0
++
++#define SSE2NEON_DEC(x) SSE2NEON_PRIMITIVE_CAT(SSE2NEON_DEC_, x)
++#define SSE2NEON_DEC_1 0
++#define SSE2NEON_DEC_2 1
++#define SSE2NEON_DEC_3 2
++#define SSE2NEON_DEC_4 3
++#define SSE2NEON_DEC_5 4
++#define SSE2NEON_DEC_6 5
++#define SSE2NEON_DEC_7 6
++#define SSE2NEON_DEC_8 7
++#define SSE2NEON_DEC_9 8
++#define SSE2NEON_DEC_10 9
++#define SSE2NEON_DEC_11 10
++#define SSE2NEON_DEC_12 11
++#define SSE2NEON_DEC_13 12
++#define SSE2NEON_DEC_14 13
++#define SSE2NEON_DEC_15 14
++#define SSE2NEON_DEC_16 15
++
++/* detection */
++#define SSE2NEON_CHECK_N(x, n, ...) n
++#define SSE2NEON_CHECK(...) SSE2NEON_CHECK_N(__VA_ARGS__, 0, )
++#define SSE2NEON_PROBE(x) x, 1,
++
++#define SSE2NEON_NOT(x) SSE2NEON_CHECK(SSE2NEON_PRIMITIVE_CAT(SSE2NEON_NOT_, x))
++#define SSE2NEON_NOT_0 SSE2NEON_PROBE(~)
++
++#define SSE2NEON_BOOL(x) SSE2NEON_COMPL(SSE2NEON_NOT(x))
++#define SSE2NEON_IF(c) SSE2NEON_IIF(SSE2NEON_BOOL(c))
++
++#define SSE2NEON_EAT(...)
++#define SSE2NEON_EXPAND(...) __VA_ARGS__
++#define SSE2NEON_WHEN(c) SSE2NEON_IF(c)(SSE2NEON_EXPAND, SSE2NEON_EAT)
++
++/* recursion */
++/* deferred expression */
++#define SSE2NEON_EMPTY()
++#define SSE2NEON_DEFER(id) id SSE2NEON_EMPTY()
++#define SSE2NEON_OBSTRUCT(...) __VA_ARGS__ SSE2NEON_DEFER(SSE2NEON_EMPTY)()
++#define SSE2NEON_EXPAND(...) __VA_ARGS__
++
++#define SSE2NEON_EVAL(...) \
++    SSE2NEON_EVAL1(SSE2NEON_EVAL1(SSE2NEON_EVAL1(__VA_ARGS__)))
++#define SSE2NEON_EVAL1(...) \
++    SSE2NEON_EVAL2(SSE2NEON_EVAL2(SSE2NEON_EVAL2(__VA_ARGS__)))
++#define SSE2NEON_EVAL2(...) \
++    SSE2NEON_EVAL3(SSE2NEON_EVAL3(SSE2NEON_EVAL3(__VA_ARGS__)))
++#define SSE2NEON_EVAL3(...) __VA_ARGS__
++
++#define SSE2NEON_REPEAT(count, macro, ...)                         \
++    SSE2NEON_WHEN(count)                                           \
++    (SSE2NEON_OBSTRUCT(SSE2NEON_REPEAT_INDIRECT)()(                \
++        SSE2NEON_DEC(count), macro,                                \
++        __VA_ARGS__) SSE2NEON_OBSTRUCT(macro)(SSE2NEON_DEC(count), \
++                                              __VA_ARGS__))
++#define SSE2NEON_REPEAT_INDIRECT() SSE2NEON_REPEAT
++
++#define SSE2NEON_SIZE_OF_byte 8
++#define SSE2NEON_NUMBER_OF_LANES_byte 16
++#define SSE2NEON_SIZE_OF_word 16
++#define SSE2NEON_NUMBER_OF_LANES_word 8
++
++#define SSE2NEON_COMPARE_EQUAL_THEN_FILL_LANE(i, type)                         \
++    mtx[i] = vreinterpretq_m128i_##type(vceqq_##type(                          \
++        vdupq_n_##type(vgetq_lane_##type(vreinterpretq_##type##_m128i(b), i)), \
++        vreinterpretq_##type##_m128i(a)));
++
++#define SSE2NEON_FILL_LANE(i, type) \
++    vec_b[i] =                      \
++        vdupq_n_##type(vgetq_lane_##type(vreinterpretq_##type##_m128i(b), i));
++
++#define PCMPSTR_RANGES(a, b, mtx, data_type_prefix, type_prefix, size,        \
++                       number_of_lanes, byte_or_word)                         \
++    do {                                                                      \
++        SSE2NEON_CAT(                                                         \
++            data_type_prefix,                                                 \
++            SSE2NEON_CAT(size,                                                \
++                         SSE2NEON_CAT(x, SSE2NEON_CAT(number_of_lanes, _t)))) \
++        vec_b[number_of_lanes];                                               \
++        __m128i mask = SSE2NEON_IIF(byte_or_word)(                            \
++            vreinterpretq_m128i_u16(vdupq_n_u16(0xff)),                       \
++            vreinterpretq_m128i_u32(vdupq_n_u32(0xffff)));                    \
++        SSE2NEON_EVAL(SSE2NEON_REPEAT(number_of_lanes, SSE2NEON_FILL_LANE,    \
++                                      SSE2NEON_CAT(type_prefix, size)))       \
++        for (int i = 0; i < number_of_lanes; i++) {                           \
++            mtx[i] = SSE2NEON_CAT(vreinterpretq_m128i_u,                      \
++                                  size)(SSE2NEON_CAT(vbslq_u, size)(          \
++                SSE2NEON_CAT(vreinterpretq_u,                                 \
++                             SSE2NEON_CAT(size, _m128i))(mask),               \
++                SSE2NEON_CAT(vcgeq_, SSE2NEON_CAT(type_prefix, size))(        \
++                    vec_b[i],                                                 \
++                    SSE2NEON_CAT(                                             \
++                        vreinterpretq_,                                       \
++                        SSE2NEON_CAT(type_prefix,                             \
++                                     SSE2NEON_CAT(size, _m128i(a))))),        \
++                SSE2NEON_CAT(vcleq_, SSE2NEON_CAT(type_prefix, size))(        \
++                    vec_b[i],                                                 \
++                    SSE2NEON_CAT(                                             \
++                        vreinterpretq_,                                       \
++                        SSE2NEON_CAT(type_prefix,                             \
++                                     SSE2NEON_CAT(size, _m128i(a)))))));      \
++        }                                                                     \
++    } while (0)
++
++#define PCMPSTR_EQ(a, b, mtx, size, number_of_lanes)                         \
++    do {                                                                     \
++        SSE2NEON_EVAL(SSE2NEON_REPEAT(number_of_lanes,                       \
++                                      SSE2NEON_COMPARE_EQUAL_THEN_FILL_LANE, \
++                                      SSE2NEON_CAT(u, size)))                \
++    } while (0)
++
++#define SSE2NEON_CMP_EQUAL_ANY_IMPL(type)                                     \
++    static int _sse2neon_cmp_##type##_equal_any(__m128i a, int la, __m128i b, \
++                                                int lb)                       \
++    {                                                                         \
++        __m128i mtx[16];                                                      \
++        PCMPSTR_EQ(a, b, mtx, SSE2NEON_CAT(SSE2NEON_SIZE_OF_, type),          \
++                   SSE2NEON_CAT(SSE2NEON_NUMBER_OF_LANES_, type));            \
++        return SSE2NEON_CAT(                                                  \
++            _sse2neon_aggregate_equal_any_,                                   \
++            SSE2NEON_CAT(                                                     \
++                SSE2NEON_CAT(SSE2NEON_SIZE_OF_, type),                        \
++                SSE2NEON_CAT(x, SSE2NEON_CAT(SSE2NEON_NUMBER_OF_LANES_,       \
++                                             type))))(la, lb, mtx);           \
++    }
++
++#define SSE2NEON_CMP_RANGES_IMPL(type, data_type, us, byte_or_word)            \
++    static int _sse2neon_cmp_##us##type##_ranges(__m128i a, int la, __m128i b, \
++                                                 int lb)                       \
++    {                                                                          \
++        __m128i mtx[16];                                                       \
++        PCMPSTR_RANGES(                                                        \
++            a, b, mtx, data_type, us, SSE2NEON_CAT(SSE2NEON_SIZE_OF_, type),   \
++            SSE2NEON_CAT(SSE2NEON_NUMBER_OF_LANES_, type), byte_or_word);      \
++        return SSE2NEON_CAT(                                                   \
++            _sse2neon_aggregate_ranges_,                                       \
++            SSE2NEON_CAT(                                                      \
++                SSE2NEON_CAT(SSE2NEON_SIZE_OF_, type),                         \
++                SSE2NEON_CAT(x, SSE2NEON_CAT(SSE2NEON_NUMBER_OF_LANES_,        \
++                                             type))))(la, lb, mtx);            \
++    }
++
++#define SSE2NEON_CMP_EQUAL_ORDERED_IMPL(type)                                  \
++    static int _sse2neon_cmp_##type##_equal_ordered(__m128i a, int la,         \
++                                                    __m128i b, int lb)         \
++    {                                                                          \
++        __m128i mtx[16];                                                       \
++        PCMPSTR_EQ(a, b, mtx, SSE2NEON_CAT(SSE2NEON_SIZE_OF_, type),           \
++                   SSE2NEON_CAT(SSE2NEON_NUMBER_OF_LANES_, type));             \
++        return SSE2NEON_CAT(                                                   \
++            _sse2neon_aggregate_equal_ordered_,                                \
++            SSE2NEON_CAT(                                                      \
++                SSE2NEON_CAT(SSE2NEON_SIZE_OF_, type),                         \
++                SSE2NEON_CAT(x,                                                \
++                             SSE2NEON_CAT(SSE2NEON_NUMBER_OF_LANES_, type))))( \
++            SSE2NEON_CAT(SSE2NEON_NUMBER_OF_LANES_, type), la, lb, mtx);       \
++    }
++
++static int _sse2neon_aggregate_equal_any_8x16(int la, int lb, __m128i mtx[16])
++{
++    int res = 0;
++    int m = (1 << la) - 1;
++    uint8x8_t vec_mask = vld1_u8(_sse2neon_cmpestr_mask8b);
++    uint8x8_t t_lo = vtst_u8(vdup_n_u8(m & 0xff), vec_mask);
++    uint8x8_t t_hi = vtst_u8(vdup_n_u8(m >> 8), vec_mask);
++    uint8x16_t vec = vcombine_u8(t_lo, t_hi);
++    for (int j = 0; j < lb; j++) {
++        mtx[j] = vreinterpretq_m128i_u8(
++            vandq_u8(vec, vreinterpretq_u8_m128i(mtx[j])));
++        mtx[j] = vreinterpretq_m128i_u8(
++            vshrq_n_u8(vreinterpretq_u8_m128i(mtx[j]), 7));
++        int tmp = _sse2neon_vaddvq_u8(vreinterpretq_u8_m128i(mtx[j])) ? 1 : 0;
++        res |= (tmp << j);
++    }
++    return res;
++}
++
++static int _sse2neon_aggregate_equal_any_16x8(int la, int lb, __m128i mtx[16])
++{
++    int res = 0;
++    int m = (1 << la) - 1;
++    uint16x8_t vec =
++        vtstq_u16(vdupq_n_u16(m), vld1q_u16(_sse2neon_cmpestr_mask16b));
++    for (int j = 0; j < lb; j++) {
++        mtx[j] = vreinterpretq_m128i_u16(
++            vandq_u16(vec, vreinterpretq_u16_m128i(mtx[j])));
++        mtx[j] = vreinterpretq_m128i_u16(
++            vshrq_n_u16(vreinterpretq_u16_m128i(mtx[j]), 15));
++        int tmp = _sse2neon_vaddvq_u16(vreinterpretq_u16_m128i(mtx[j])) ? 1 : 0;
++        res |= (tmp << j);
++    }
++    return res;
++}
++
++/* clang-format off */
++#define SSE2NEON_GENERATE_CMP_EQUAL_ANY(prefix) \
++    prefix##IMPL(byte) \
++    prefix##IMPL(word)
++/* clang-format on */
++
++SSE2NEON_GENERATE_CMP_EQUAL_ANY(SSE2NEON_CMP_EQUAL_ANY_)
++
++static int _sse2neon_aggregate_ranges_16x8(int la, int lb, __m128i mtx[16])
++{
++    int res = 0;
++    int m = (1 << la) - 1;
++    uint16x8_t vec =
++        vtstq_u16(vdupq_n_u16(m), vld1q_u16(_sse2neon_cmpestr_mask16b));
++    for (int j = 0; j < lb; j++) {
++        mtx[j] = vreinterpretq_m128i_u16(
++            vandq_u16(vec, vreinterpretq_u16_m128i(mtx[j])));
++        mtx[j] = vreinterpretq_m128i_u16(
++            vshrq_n_u16(vreinterpretq_u16_m128i(mtx[j]), 15));
++        __m128i tmp = vreinterpretq_m128i_u32(
++            vshrq_n_u32(vreinterpretq_u32_m128i(mtx[j]), 16));
++        uint32x4_t vec_res = vandq_u32(vreinterpretq_u32_m128i(mtx[j]),
++                                       vreinterpretq_u32_m128i(tmp));
++#if defined(__aarch64__) || defined(_M_ARM64)
++        int t = vaddvq_u32(vec_res) ? 1 : 0;
++#else
++        uint64x2_t sumh = vpaddlq_u32(vec_res);
++        int t = vgetq_lane_u64(sumh, 0) + vgetq_lane_u64(sumh, 1);
++#endif
++        res |= (t << j);
++    }
++    return res;
++}
++
++static int _sse2neon_aggregate_ranges_8x16(int la, int lb, __m128i mtx[16])
++{
++    int res = 0;
++    int m = (1 << la) - 1;
++    uint8x8_t vec_mask = vld1_u8(_sse2neon_cmpestr_mask8b);
++    uint8x8_t t_lo = vtst_u8(vdup_n_u8(m & 0xff), vec_mask);
++    uint8x8_t t_hi = vtst_u8(vdup_n_u8(m >> 8), vec_mask);
++    uint8x16_t vec = vcombine_u8(t_lo, t_hi);
++    for (int j = 0; j < lb; j++) {
++        mtx[j] = vreinterpretq_m128i_u8(
++            vandq_u8(vec, vreinterpretq_u8_m128i(mtx[j])));
++        mtx[j] = vreinterpretq_m128i_u8(
++            vshrq_n_u8(vreinterpretq_u8_m128i(mtx[j]), 7));
++        __m128i tmp = vreinterpretq_m128i_u16(
++            vshrq_n_u16(vreinterpretq_u16_m128i(mtx[j]), 8));
++        uint16x8_t vec_res = vandq_u16(vreinterpretq_u16_m128i(mtx[j]),
++                                       vreinterpretq_u16_m128i(tmp));
++        int t = _sse2neon_vaddvq_u16(vec_res) ? 1 : 0;
++        res |= (t << j);
++    }
++    return res;
++}
++
++#define SSE2NEON_CMP_RANGES_IS_BYTE 1
++#define SSE2NEON_CMP_RANGES_IS_WORD 0
++
++/* clang-format off */
++#define SSE2NEON_GENERATE_CMP_RANGES(prefix)             \
++    prefix##IMPL(byte, uint, u, prefix##IS_BYTE)         \
++    prefix##IMPL(byte, int, s, prefix##IS_BYTE)          \
++    prefix##IMPL(word, uint, u, prefix##IS_WORD)         \
++    prefix##IMPL(word, int, s, prefix##IS_WORD)
++/* clang-format on */
++
++SSE2NEON_GENERATE_CMP_RANGES(SSE2NEON_CMP_RANGES_)
++
++#undef SSE2NEON_CMP_RANGES_IS_BYTE
++#undef SSE2NEON_CMP_RANGES_IS_WORD
++
++static int _sse2neon_cmp_byte_equal_each(__m128i a, int la, __m128i b, int lb)
++{
++    uint8x16_t mtx =
++        vceqq_u8(vreinterpretq_u8_m128i(a), vreinterpretq_u8_m128i(b));
++    int m0 = (la < lb) ? 0 : ((1 << la) - (1 << lb));
++    int m1 = 0x10000 - (1 << la);
++    int tb = 0x10000 - (1 << lb);
++    uint8x8_t vec_mask, vec0_lo, vec0_hi, vec1_lo, vec1_hi;
++    uint8x8_t tmp_lo, tmp_hi, res_lo, res_hi;
++    vec_mask = vld1_u8(_sse2neon_cmpestr_mask8b);
++    vec0_lo = vtst_u8(vdup_n_u8(m0), vec_mask);
++    vec0_hi = vtst_u8(vdup_n_u8(m0 >> 8), vec_mask);
++    vec1_lo = vtst_u8(vdup_n_u8(m1), vec_mask);
++    vec1_hi = vtst_u8(vdup_n_u8(m1 >> 8), vec_mask);
++    tmp_lo = vtst_u8(vdup_n_u8(tb), vec_mask);
++    tmp_hi = vtst_u8(vdup_n_u8(tb >> 8), vec_mask);
++
++    res_lo = vbsl_u8(vec0_lo, vdup_n_u8(0), vget_low_u8(mtx));
++    res_hi = vbsl_u8(vec0_hi, vdup_n_u8(0), vget_high_u8(mtx));
++    res_lo = vbsl_u8(vec1_lo, tmp_lo, res_lo);
++    res_hi = vbsl_u8(vec1_hi, tmp_hi, res_hi);
++    res_lo = vand_u8(res_lo, vec_mask);
++    res_hi = vand_u8(res_hi, vec_mask);
++
++    int res = _sse2neon_vaddv_u8(res_lo) + (_sse2neon_vaddv_u8(res_hi) << 8);
++    return res;
++}
++
++static int _sse2neon_cmp_word_equal_each(__m128i a, int la, __m128i b, int lb)
++{
++    uint16x8_t mtx =
++        vceqq_u16(vreinterpretq_u16_m128i(a), vreinterpretq_u16_m128i(b));
++    int m0 = (la < lb) ? 0 : ((1 << la) - (1 << lb));
++    int m1 = 0x100 - (1 << la);
++    int tb = 0x100 - (1 << lb);
++    uint16x8_t vec_mask = vld1q_u16(_sse2neon_cmpestr_mask16b);
++    uint16x8_t vec0 = vtstq_u16(vdupq_n_u16(m0), vec_mask);
++    uint16x8_t vec1 = vtstq_u16(vdupq_n_u16(m1), vec_mask);
++    uint16x8_t tmp = vtstq_u16(vdupq_n_u16(tb), vec_mask);
++    mtx = vbslq_u16(vec0, vdupq_n_u16(0), mtx);
++    mtx = vbslq_u16(vec1, tmp, mtx);
++    mtx = vandq_u16(mtx, vec_mask);
++    return _sse2neon_vaddvq_u16(mtx);
++}
++
++#define SSE2NEON_AGGREGATE_EQUAL_ORDER_IS_UBYTE 1
++#define SSE2NEON_AGGREGATE_EQUAL_ORDER_IS_UWORD 0
++
++#define SSE2NEON_AGGREGATE_EQUAL_ORDER_IMPL(size, number_of_lanes, data_type)  \
++    static int _sse2neon_aggregate_equal_ordered_##size##x##number_of_lanes(   \
++        int bound, int la, int lb, __m128i mtx[16])                            \
++    {                                                                          \
++        int res = 0;                                                           \
++        int m1 = SSE2NEON_IIF(data_type)(0x10000, 0x100) - (1 << la);          \
++        uint##size##x8_t vec_mask = SSE2NEON_IIF(data_type)(                   \
++            vld1_u##size(_sse2neon_cmpestr_mask##size##b),                     \
++            vld1q_u##size(_sse2neon_cmpestr_mask##size##b));                   \
++        uint##size##x##number_of_lanes##_t vec1 = SSE2NEON_IIF(data_type)(     \
++            vcombine_u##size(vtst_u##size(vdup_n_u##size(m1), vec_mask),       \
++                             vtst_u##size(vdup_n_u##size(m1 >> 8), vec_mask)), \
++            vtstq_u##size(vdupq_n_u##size(m1), vec_mask));                     \
++        uint##size##x##number_of_lanes##_t vec_minusone = vdupq_n_u##size(-1); \
++        uint##size##x##number_of_lanes##_t vec_zero = vdupq_n_u##size(0);      \
++        for (int j = 0; j < lb; j++) {                                         \
++            mtx[j] = vreinterpretq_m128i_u##size(vbslq_u##size(                \
++                vec1, vec_minusone, vreinterpretq_u##size##_m128i(mtx[j])));   \
++        }                                                                      \
++        for (int j = lb; j < bound; j++) {                                     \
++            mtx[j] = vreinterpretq_m128i_u##size(                              \
++                vbslq_u##size(vec1, vec_minusone, vec_zero));                  \
++        }                                                                      \
++        unsigned SSE2NEON_IIF(data_type)(char, short) *ptr =                   \
++            (unsigned SSE2NEON_IIF(data_type)(char, short) *) mtx;             \
++        for (int i = 0; i < bound; i++) {                                      \
++            int val = 1;                                                       \
++            for (int j = 0, k = i; j < bound - i && k < bound; j++, k++)       \
++                val &= ptr[k * bound + j];                                     \
++            res += val << i;                                                   \
++        }                                                                      \
++        return res;                                                            \
++    }
++
++/* clang-format off */
++#define SSE2NEON_GENERATE_AGGREGATE_EQUAL_ORDER(prefix) \
++    prefix##IMPL(8, 16, prefix##IS_UBYTE)               \
++    prefix##IMPL(16, 8, prefix##IS_UWORD)
++/* clang-format on */
++
++SSE2NEON_GENERATE_AGGREGATE_EQUAL_ORDER(SSE2NEON_AGGREGATE_EQUAL_ORDER_)
++
++#undef SSE2NEON_AGGREGATE_EQUAL_ORDER_IS_UBYTE
++#undef SSE2NEON_AGGREGATE_EQUAL_ORDER_IS_UWORD
++
++/* clang-format off */
++#define SSE2NEON_GENERATE_CMP_EQUAL_ORDERED(prefix) \
++    prefix##IMPL(byte)                              \
++    prefix##IMPL(word)
++/* clang-format on */
++
++SSE2NEON_GENERATE_CMP_EQUAL_ORDERED(SSE2NEON_CMP_EQUAL_ORDERED_)
++
++#define SSE2NEON_CMPESTR_LIST                          \
++    _(CMP_UBYTE_EQUAL_ANY, cmp_byte_equal_any)         \
++    _(CMP_UWORD_EQUAL_ANY, cmp_word_equal_any)         \
++    _(CMP_SBYTE_EQUAL_ANY, cmp_byte_equal_any)         \
++    _(CMP_SWORD_EQUAL_ANY, cmp_word_equal_any)         \
++    _(CMP_UBYTE_RANGES, cmp_ubyte_ranges)              \
++    _(CMP_UWORD_RANGES, cmp_uword_ranges)              \
++    _(CMP_SBYTE_RANGES, cmp_sbyte_ranges)              \
++    _(CMP_SWORD_RANGES, cmp_sword_ranges)              \
++    _(CMP_UBYTE_EQUAL_EACH, cmp_byte_equal_each)       \
++    _(CMP_UWORD_EQUAL_EACH, cmp_word_equal_each)       \
++    _(CMP_SBYTE_EQUAL_EACH, cmp_byte_equal_each)       \
++    _(CMP_SWORD_EQUAL_EACH, cmp_word_equal_each)       \
++    _(CMP_UBYTE_EQUAL_ORDERED, cmp_byte_equal_ordered) \
++    _(CMP_UWORD_EQUAL_ORDERED, cmp_word_equal_ordered) \
++    _(CMP_SBYTE_EQUAL_ORDERED, cmp_byte_equal_ordered) \
++    _(CMP_SWORD_EQUAL_ORDERED, cmp_word_equal_ordered)
++
++enum {
++#define _(name, func_suffix) name,
++    SSE2NEON_CMPESTR_LIST
++#undef _
++};
++typedef int (*cmpestr_func_t)(__m128i a, int la, __m128i b, int lb);
++static cmpestr_func_t _sse2neon_cmpfunc_table[] = {
++#define _(name, func_suffix) _sse2neon_##func_suffix,
++    SSE2NEON_CMPESTR_LIST
++#undef _
++};
++
++FORCE_INLINE int _sse2neon_sido_negative(int res, int lb, int imm8, int bound)
++{
++    switch (imm8 & 0x30) {
++    case _SIDD_NEGATIVE_POLARITY:
++        res ^= 0xffffffff;
++        break;
++    case _SIDD_MASKED_NEGATIVE_POLARITY:
++        res ^= (1 << lb) - 1;
++        break;
++    default:
++        break;
++    }
++
++    return res & ((bound == 8) ? 0xFF : 0xFFFF);
++}
++
++FORCE_INLINE int _sse2neon_clz(unsigned int x)
++{
++#ifdef _MSC_VER
++    unsigned long cnt = 0;
++    if (_BitScanReverse(&cnt, x))
++        return 31 - cnt;
++    return 32;
++#else
++    return x != 0 ? __builtin_clz(x) : 32;
++#endif
++}
++
++FORCE_INLINE int _sse2neon_ctz(unsigned int x)
++{
++#ifdef _MSC_VER
++    unsigned long cnt = 0;
++    if (_BitScanForward(&cnt, x))
++        return cnt;
++    return 32;
++#else
++    return x != 0 ? __builtin_ctz(x) : 32;
++#endif
++}
++
++FORCE_INLINE int _sse2neon_ctzll(unsigned long long x)
++{
++#ifdef _MSC_VER
++    unsigned long cnt;
++#if defined(SSE2NEON_HAS_BITSCAN64)
++    if (_BitScanForward64(&cnt, x))
++        return (int) (cnt);
++#else
++    if (_BitScanForward(&cnt, (unsigned long) (x)))
++        return (int) cnt;
++    if (_BitScanForward(&cnt, (unsigned long) (x >> 32)))
++        return (int) (cnt + 32);
++#endif /* SSE2NEON_HAS_BITSCAN64 */
++    return 64;
++#else /* assume GNU compatible compilers */
++    return x != 0 ? __builtin_ctzll(x) : 64;
++#endif
++}
++
++#define SSE2NEON_MIN(x, y) (x) < (y) ? (x) : (y)
++
++#define SSE2NEON_CMPSTR_SET_UPPER(var, imm) \
++    const int var = (imm & 0x01) ? 8 : 16
++
++#define SSE2NEON_CMPESTRX_LEN_PAIR(a, b, la, lb) \
++    int tmp1 = la ^ (la >> 31);                  \
++    la = tmp1 - (la >> 31);                      \
++    int tmp2 = lb ^ (lb >> 31);                  \
++    lb = tmp2 - (lb >> 31);                      \
++    la = SSE2NEON_MIN(la, bound);                \
++    lb = SSE2NEON_MIN(lb, bound)
++
++// Compare all pairs of character in string a and b,
++// then aggregate the result.
++// As the only difference of PCMPESTR* and PCMPISTR* is the way to calculate the
++// length of string, we use SSE2NEON_CMP{I,E}STRX_GET_LEN to get the length of
++// string a and b.
++#define SSE2NEON_COMP_AGG(a, b, la, lb, imm8, IE)                  \
++    SSE2NEON_CMPSTR_SET_UPPER(bound, imm8);                        \
++    SSE2NEON_##IE##_LEN_PAIR(a, b, la, lb);                        \
++    int r2 = (_sse2neon_cmpfunc_table[imm8 & 0x0f])(a, la, b, lb); \
++    r2 = _sse2neon_sido_negative(r2, lb, imm8, bound)
++
++#define SSE2NEON_CMPSTR_GENERATE_INDEX(r2, bound, imm8)          \
++    return (r2 == 0) ? bound                                     \
++                     : ((imm8 & 0x40) ? (31 - _sse2neon_clz(r2)) \
++                                      : _sse2neon_ctz(r2))
++
++#define SSE2NEON_CMPSTR_GENERATE_MASK(dst)                                     \
++    __m128i dst = vreinterpretq_m128i_u8(vdupq_n_u8(0));                       \
++    if (imm8 & 0x40) {                                                         \
++        if (bound == 8) {                                                      \
++            uint16x8_t tmp = vtstq_u16(vdupq_n_u16(r2),                        \
++                                       vld1q_u16(_sse2neon_cmpestr_mask16b));  \
++            dst = vreinterpretq_m128i_u16(vbslq_u16(                           \
++                tmp, vdupq_n_u16(-1), vreinterpretq_u16_m128i(dst)));          \
++        } else {                                                               \
++            uint8x16_t vec_r2 =                                                \
++                vcombine_u8(vdup_n_u8(r2), vdup_n_u8(r2 >> 8));                \
++            uint8x16_t tmp =                                                   \
++                vtstq_u8(vec_r2, vld1q_u8(_sse2neon_cmpestr_mask8b));          \
++            dst = vreinterpretq_m128i_u8(                                      \
++                vbslq_u8(tmp, vdupq_n_u8(-1), vreinterpretq_u8_m128i(dst)));   \
++        }                                                                      \
++    } else {                                                                   \
++        if (bound == 16) {                                                     \
++            dst = vreinterpretq_m128i_u16(                                     \
++                vsetq_lane_u16(r2 & 0xffff, vreinterpretq_u16_m128i(dst), 0)); \
++        } else {                                                               \
++            dst = vreinterpretq_m128i_u8(                                      \
++                vsetq_lane_u8(r2 & 0xff, vreinterpretq_u8_m128i(dst), 0));     \
++        }                                                                      \
++    }                                                                          \
++    return dst
++
++// Compare packed strings in a and b with lengths la and lb using the control
++// in imm8, and returns 1 if b did not contain a null character and the
++// resulting mask was zero, and 0 otherwise.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpestra
++FORCE_INLINE int _mm_cmpestra(__m128i a,
++                              int la,
++                              __m128i b,
++                              int lb,
++                              const int imm8)
++{
++    int lb_cpy = lb;
++    SSE2NEON_COMP_AGG(a, b, la, lb, imm8, CMPESTRX);
++    return !r2 & (lb_cpy > bound);
++}
++
++// Compare packed strings in a and b with lengths la and lb using the control in
++// imm8, and returns 1 if the resulting mask was non-zero, and 0 otherwise.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpestrc
++FORCE_INLINE int _mm_cmpestrc(__m128i a,
++                              int la,
++                              __m128i b,
++                              int lb,
++                              const int imm8)
++{
++    SSE2NEON_COMP_AGG(a, b, la, lb, imm8, CMPESTRX);
++    return r2 != 0;
++}
++
++// Compare packed strings in a and b with lengths la and lb using the control
++// in imm8, and store the generated index in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpestri
++FORCE_INLINE int _mm_cmpestri(__m128i a,
++                              int la,
++                              __m128i b,
++                              int lb,
++                              const int imm8)
++{
++    SSE2NEON_COMP_AGG(a, b, la, lb, imm8, CMPESTRX);
++    SSE2NEON_CMPSTR_GENERATE_INDEX(r2, bound, imm8);
++}
++
++// Compare packed strings in a and b with lengths la and lb using the control
++// in imm8, and store the generated mask in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpestrm
++FORCE_INLINE __m128i
++_mm_cmpestrm(__m128i a, int la, __m128i b, int lb, const int imm8)
++{
++    SSE2NEON_COMP_AGG(a, b, la, lb, imm8, CMPESTRX);
++    SSE2NEON_CMPSTR_GENERATE_MASK(dst);
++}
++
++// Compare packed strings in a and b with lengths la and lb using the control in
++// imm8, and returns bit 0 of the resulting bit mask.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpestro
++FORCE_INLINE int _mm_cmpestro(__m128i a,
++                              int la,
++                              __m128i b,
++                              int lb,
++                              const int imm8)
++{
++    SSE2NEON_COMP_AGG(a, b, la, lb, imm8, CMPESTRX);
++    return r2 & 1;
++}
++
++// Compare packed strings in a and b with lengths la and lb using the control in
++// imm8, and returns 1 if any character in a was null, and 0 otherwise.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpestrs
++FORCE_INLINE int _mm_cmpestrs(__m128i a,
++                              int la,
++                              __m128i b,
++                              int lb,
++                              const int imm8)
++{
++    (void) a;
++    (void) b;
++    (void) lb;
++    SSE2NEON_CMPSTR_SET_UPPER(bound, imm8);
++    return la <= (bound - 1);
++}
++
++// Compare packed strings in a and b with lengths la and lb using the control in
++// imm8, and returns 1 if any character in b was null, and 0 otherwise.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpestrz
++FORCE_INLINE int _mm_cmpestrz(__m128i a,
++                              int la,
++                              __m128i b,
++                              int lb,
++                              const int imm8)
++{
++    (void) a;
++    (void) b;
++    (void) la;
++    SSE2NEON_CMPSTR_SET_UPPER(bound, imm8);
++    return lb <= (bound - 1);
++}
++
++#define SSE2NEON_CMPISTRX_LENGTH(str, len, imm8)                         \
++    do {                                                                 \
++        if (imm8 & 0x01) {                                               \
++            uint16x8_t equal_mask_##str =                                \
++                vceqq_u16(vreinterpretq_u16_m128i(str), vdupq_n_u16(0)); \
++            uint8x8_t res_##str = vshrn_n_u16(equal_mask_##str, 4);      \
++            uint64_t matches_##str =                                     \
++                vget_lane_u64(vreinterpret_u64_u8(res_##str), 0);        \
++            len = _sse2neon_ctzll(matches_##str) >> 3;                   \
++        } else {                                                         \
++            uint16x8_t equal_mask_##str = vreinterpretq_u16_u8(          \
++                vceqq_u8(vreinterpretq_u8_m128i(str), vdupq_n_u8(0)));   \
++            uint8x8_t res_##str = vshrn_n_u16(equal_mask_##str, 4);      \
++            uint64_t matches_##str =                                     \
++                vget_lane_u64(vreinterpret_u64_u8(res_##str), 0);        \
++            len = _sse2neon_ctzll(matches_##str) >> 2;                   \
++        }                                                                \
++    } while (0)
++
++#define SSE2NEON_CMPISTRX_LEN_PAIR(a, b, la, lb) \
++    int la, lb;                                  \
++    do {                                         \
++        SSE2NEON_CMPISTRX_LENGTH(a, la, imm8);   \
++        SSE2NEON_CMPISTRX_LENGTH(b, lb, imm8);   \
++    } while (0)
++
++// Compare packed strings with implicit lengths in a and b using the control in
++// imm8, and returns 1 if b did not contain a null character and the resulting
++// mask was zero, and 0 otherwise.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpistra
++FORCE_INLINE int _mm_cmpistra(__m128i a, __m128i b, const int imm8)
++{
++    SSE2NEON_COMP_AGG(a, b, la, lb, imm8, CMPISTRX);
++    return !r2 & (lb >= bound);
++}
++
++// Compare packed strings with implicit lengths in a and b using the control in
++// imm8, and returns 1 if the resulting mask was non-zero, and 0 otherwise.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpistrc
++FORCE_INLINE int _mm_cmpistrc(__m128i a, __m128i b, const int imm8)
++{
++    SSE2NEON_COMP_AGG(a, b, la, lb, imm8, CMPISTRX);
++    return r2 != 0;
++}
++
++// Compare packed strings with implicit lengths in a and b using the control in
++// imm8, and store the generated index in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpistri
++FORCE_INLINE int _mm_cmpistri(__m128i a, __m128i b, const int imm8)
++{
++    SSE2NEON_COMP_AGG(a, b, la, lb, imm8, CMPISTRX);
++    SSE2NEON_CMPSTR_GENERATE_INDEX(r2, bound, imm8);
++}
++
++// Compare packed strings with implicit lengths in a and b using the control in
++// imm8, and store the generated mask in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpistrm
++FORCE_INLINE __m128i _mm_cmpistrm(__m128i a, __m128i b, const int imm8)
++{
++    SSE2NEON_COMP_AGG(a, b, la, lb, imm8, CMPISTRX);
++    SSE2NEON_CMPSTR_GENERATE_MASK(dst);
++}
++
++// Compare packed strings with implicit lengths in a and b using the control in
++// imm8, and returns bit 0 of the resulting bit mask.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpistro
++FORCE_INLINE int _mm_cmpistro(__m128i a, __m128i b, const int imm8)
++{
++    SSE2NEON_COMP_AGG(a, b, la, lb, imm8, CMPISTRX);
++    return r2 & 1;
++}
++
++// Compare packed strings with implicit lengths in a and b using the control in
++// imm8, and returns 1 if any character in a was null, and 0 otherwise.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpistrs
++FORCE_INLINE int _mm_cmpistrs(__m128i a, __m128i b, const int imm8)
++{
++    (void) b;
++    SSE2NEON_CMPSTR_SET_UPPER(bound, imm8);
++    int la;
++    SSE2NEON_CMPISTRX_LENGTH(a, la, imm8);
++    return la <= (bound - 1);
++}
++
++// Compare packed strings with implicit lengths in a and b using the control in
++// imm8, and returns 1 if any character in b was null, and 0 otherwise.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpistrz
++FORCE_INLINE int _mm_cmpistrz(__m128i a, __m128i b, const int imm8)
++{
++    (void) a;
++    SSE2NEON_CMPSTR_SET_UPPER(bound, imm8);
++    int lb;
++    SSE2NEON_CMPISTRX_LENGTH(b, lb, imm8);
++    return lb <= (bound - 1);
++}
++
++// Compares the 2 signed 64-bit integers in a and the 2 signed 64-bit integers
++// in b for greater than.
++FORCE_INLINE __m128i _mm_cmpgt_epi64(__m128i a, __m128i b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_u64(
++        vcgtq_s64(vreinterpretq_s64_m128i(a), vreinterpretq_s64_m128i(b)));
++#else
++    return vreinterpretq_m128i_s64(vshrq_n_s64(
++        vqsubq_s64(vreinterpretq_s64_m128i(b), vreinterpretq_s64_m128i(a)),
++        63));
++#endif
++}
++
++// Starting with the initial value in crc, accumulates a CRC32 value for
++// unsigned 16-bit integer v, and stores the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_crc32_u16
++FORCE_INLINE uint32_t _mm_crc32_u16(uint32_t crc, uint16_t v)
++{
++#if defined(__aarch64__) && defined(__ARM_FEATURE_CRC32)
++    __asm__ __volatile__("crc32ch %w[c], %w[c], %w[v]\n\t"
++                         : [c] "+r"(crc)
++                         : [v] "r"(v));
++#elif ((__ARM_ARCH == 8) && defined(__ARM_FEATURE_CRC32)) || \
++    (defined(_M_ARM64) && !defined(__clang__))
++    crc = __crc32ch(crc, v);
++#else
++    crc = _mm_crc32_u8(crc, v & 0xff);
++    crc = _mm_crc32_u8(crc, (v >> 8) & 0xff);
++#endif
++    return crc;
++}
++
++// Starting with the initial value in crc, accumulates a CRC32 value for
++// unsigned 32-bit integer v, and stores the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_crc32_u32
++FORCE_INLINE uint32_t _mm_crc32_u32(uint32_t crc, uint32_t v)
++{
++#if defined(__aarch64__) && defined(__ARM_FEATURE_CRC32)
++    __asm__ __volatile__("crc32cw %w[c], %w[c], %w[v]\n\t"
++                         : [c] "+r"(crc)
++                         : [v] "r"(v));
++#elif ((__ARM_ARCH == 8) && defined(__ARM_FEATURE_CRC32)) || \
++    (defined(_M_ARM64) && !defined(__clang__))
++    crc = __crc32cw(crc, v);
++#else
++    crc = _mm_crc32_u16(crc, v & 0xffff);
++    crc = _mm_crc32_u16(crc, (v >> 16) & 0xffff);
++#endif
++    return crc;
++}
++
++// Starting with the initial value in crc, accumulates a CRC32 value for
++// unsigned 64-bit integer v, and stores the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_crc32_u64
++FORCE_INLINE uint64_t _mm_crc32_u64(uint64_t crc, uint64_t v)
++{
++#if defined(__aarch64__) && defined(__ARM_FEATURE_CRC32)
++    __asm__ __volatile__("crc32cx %w[c], %w[c], %x[v]\n\t"
++                         : [c] "+r"(crc)
++                         : [v] "r"(v));
++#elif (defined(_M_ARM64) && !defined(__clang__))
++    crc = __crc32cd((uint32_t) crc, v);
++#else
++    crc = _mm_crc32_u32((uint32_t) (crc), v & 0xffffffff);
++    crc = _mm_crc32_u32((uint32_t) (crc), (v >> 32) & 0xffffffff);
++#endif
++    return crc;
++}
++
++// Starting with the initial value in crc, accumulates a CRC32 value for
++// unsigned 8-bit integer v, and stores the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_crc32_u8
++FORCE_INLINE uint32_t _mm_crc32_u8(uint32_t crc, uint8_t v)
++{
++#if defined(__aarch64__) && defined(__ARM_FEATURE_CRC32)
++    __asm__ __volatile__("crc32cb %w[c], %w[c], %w[v]\n\t"
++                         : [c] "+r"(crc)
++                         : [v] "r"(v));
++#elif ((__ARM_ARCH == 8) && defined(__ARM_FEATURE_CRC32)) || \
++    (defined(_M_ARM64) && !defined(__clang__))
++    crc = __crc32cb(crc, v);
++#else
++    crc ^= v;
++#if defined(__ARM_FEATURE_CRYPTO)
++    // Adapted from: https://mary.rs/lab/crc32/
++    // Barrent reduction
++    uint64x2_t orig =
++        vcombine_u64(vcreate_u64((uint64_t) (crc) << 24), vcreate_u64(0x0));
++    uint64x2_t tmp = orig;
++
++    // Polynomial P(x) of CRC32C
++    uint64_t p = 0x105EC76F1;
++    // Barrett Reduction (in bit-reflected form) constant mu_{64} = \lfloor
++    // 2^{64} / P(x) \rfloor = 0x11f91caf6
++    uint64_t mu = 0x1dea713f1;
++
++    // Multiply by mu_{64}
++    tmp = _sse2neon_vmull_p64(vget_low_u64(tmp), vcreate_u64(mu));
++    // Divide by 2^{64} (mask away the unnecessary bits)
++    tmp =
++        vandq_u64(tmp, vcombine_u64(vcreate_u64(0xFFFFFFFF), vcreate_u64(0x0)));
++    // Multiply by P(x) (shifted left by 1 for alignment reasons)
++    tmp = _sse2neon_vmull_p64(vget_low_u64(tmp), vcreate_u64(p));
++    // Subtract original from result
++    tmp = veorq_u64(tmp, orig);
++
++    // Extract the 'lower' (in bit-reflected sense) 32 bits
++    crc = vgetq_lane_u32(vreinterpretq_u32_u64(tmp), 1);
++#else  // Fall back to the generic table lookup approach
++    // Adapted from: https://create.stephan-brumme.com/crc32/
++    // Apply half-byte comparision algorithm for the best ratio between
++    // performance and lookup table.
++
++    // The lookup table just needs to store every 16th entry
++    // of the standard look-up table.
++    static const uint32_t crc32_half_byte_tbl[] = {
++        0x00000000, 0x105ec76f, 0x20bd8ede, 0x30e349b1, 0x417b1dbc, 0x5125dad3,
++        0x61c69362, 0x7198540d, 0x82f63b78, 0x92a8fc17, 0xa24bb5a6, 0xb21572c9,
++        0xc38d26c4, 0xd3d3e1ab, 0xe330a81a, 0xf36e6f75,
++    };
++
++    crc = (crc >> 4) ^ crc32_half_byte_tbl[crc & 0x0F];
++    crc = (crc >> 4) ^ crc32_half_byte_tbl[crc & 0x0F];
++#endif
++#endif
++    return crc;
++}
++
++/* AES */
++
++#if !defined(__ARM_FEATURE_CRYPTO) && (!defined(_M_ARM64) || defined(__clang__))
++/* clang-format off */
++#define SSE2NEON_AES_SBOX(w)                                           \
++    {                                                                  \
++        w(0x63), w(0x7c), w(0x77), w(0x7b), w(0xf2), w(0x6b), w(0x6f), \
++        w(0xc5), w(0x30), w(0x01), w(0x67), w(0x2b), w(0xfe), w(0xd7), \
++        w(0xab), w(0x76), w(0xca), w(0x82), w(0xc9), w(0x7d), w(0xfa), \
++        w(0x59), w(0x47), w(0xf0), w(0xad), w(0xd4), w(0xa2), w(0xaf), \
++        w(0x9c), w(0xa4), w(0x72), w(0xc0), w(0xb7), w(0xfd), w(0x93), \
++        w(0x26), w(0x36), w(0x3f), w(0xf7), w(0xcc), w(0x34), w(0xa5), \
++        w(0xe5), w(0xf1), w(0x71), w(0xd8), w(0x31), w(0x15), w(0x04), \
++        w(0xc7), w(0x23), w(0xc3), w(0x18), w(0x96), w(0x05), w(0x9a), \
++        w(0x07), w(0x12), w(0x80), w(0xe2), w(0xeb), w(0x27), w(0xb2), \
++        w(0x75), w(0x09), w(0x83), w(0x2c), w(0x1a), w(0x1b), w(0x6e), \
++        w(0x5a), w(0xa0), w(0x52), w(0x3b), w(0xd6), w(0xb3), w(0x29), \
++        w(0xe3), w(0x2f), w(0x84), w(0x53), w(0xd1), w(0x00), w(0xed), \
++        w(0x20), w(0xfc), w(0xb1), w(0x5b), w(0x6a), w(0xcb), w(0xbe), \
++        w(0x39), w(0x4a), w(0x4c), w(0x58), w(0xcf), w(0xd0), w(0xef), \
++        w(0xaa), w(0xfb), w(0x43), w(0x4d), w(0x33), w(0x85), w(0x45), \
++        w(0xf9), w(0x02), w(0x7f), w(0x50), w(0x3c), w(0x9f), w(0xa8), \
++        w(0x51), w(0xa3), w(0x40), w(0x8f), w(0x92), w(0x9d), w(0x38), \
++        w(0xf5), w(0xbc), w(0xb6), w(0xda), w(0x21), w(0x10), w(0xff), \
++        w(0xf3), w(0xd2), w(0xcd), w(0x0c), w(0x13), w(0xec), w(0x5f), \
++        w(0x97), w(0x44), w(0x17), w(0xc4), w(0xa7), w(0x7e), w(0x3d), \
++        w(0x64), w(0x5d), w(0x19), w(0x73), w(0x60), w(0x81), w(0x4f), \
++        w(0xdc), w(0x22), w(0x2a), w(0x90), w(0x88), w(0x46), w(0xee), \
++        w(0xb8), w(0x14), w(0xde), w(0x5e), w(0x0b), w(0xdb), w(0xe0), \
++        w(0x32), w(0x3a), w(0x0a), w(0x49), w(0x06), w(0x24), w(0x5c), \
++        w(0xc2), w(0xd3), w(0xac), w(0x62), w(0x91), w(0x95), w(0xe4), \
++        w(0x79), w(0xe7), w(0xc8), w(0x37), w(0x6d), w(0x8d), w(0xd5), \
++        w(0x4e), w(0xa9), w(0x6c), w(0x56), w(0xf4), w(0xea), w(0x65), \
++        w(0x7a), w(0xae), w(0x08), w(0xba), w(0x78), w(0x25), w(0x2e), \
++        w(0x1c), w(0xa6), w(0xb4), w(0xc6), w(0xe8), w(0xdd), w(0x74), \
++        w(0x1f), w(0x4b), w(0xbd), w(0x8b), w(0x8a), w(0x70), w(0x3e), \
++        w(0xb5), w(0x66), w(0x48), w(0x03), w(0xf6), w(0x0e), w(0x61), \
++        w(0x35), w(0x57), w(0xb9), w(0x86), w(0xc1), w(0x1d), w(0x9e), \
++        w(0xe1), w(0xf8), w(0x98), w(0x11), w(0x69), w(0xd9), w(0x8e), \
++        w(0x94), w(0x9b), w(0x1e), w(0x87), w(0xe9), w(0xce), w(0x55), \
++        w(0x28), w(0xdf), w(0x8c), w(0xa1), w(0x89), w(0x0d), w(0xbf), \
++        w(0xe6), w(0x42), w(0x68), w(0x41), w(0x99), w(0x2d), w(0x0f), \
++        w(0xb0), w(0x54), w(0xbb), w(0x16)                             \
++    }
++#define SSE2NEON_AES_RSBOX(w)                                          \
++    {                                                                  \
++        w(0x52), w(0x09), w(0x6a), w(0xd5), w(0x30), w(0x36), w(0xa5), \
++        w(0x38), w(0xbf), w(0x40), w(0xa3), w(0x9e), w(0x81), w(0xf3), \
++        w(0xd7), w(0xfb), w(0x7c), w(0xe3), w(0x39), w(0x82), w(0x9b), \
++        w(0x2f), w(0xff), w(0x87), w(0x34), w(0x8e), w(0x43), w(0x44), \
++        w(0xc4), w(0xde), w(0xe9), w(0xcb), w(0x54), w(0x7b), w(0x94), \
++        w(0x32), w(0xa6), w(0xc2), w(0x23), w(0x3d), w(0xee), w(0x4c), \
++        w(0x95), w(0x0b), w(0x42), w(0xfa), w(0xc3), w(0x4e), w(0x08), \
++        w(0x2e), w(0xa1), w(0x66), w(0x28), w(0xd9), w(0x24), w(0xb2), \
++        w(0x76), w(0x5b), w(0xa2), w(0x49), w(0x6d), w(0x8b), w(0xd1), \
++        w(0x25), w(0x72), w(0xf8), w(0xf6), w(0x64), w(0x86), w(0x68), \
++        w(0x98), w(0x16), w(0xd4), w(0xa4), w(0x5c), w(0xcc), w(0x5d), \
++        w(0x65), w(0xb6), w(0x92), w(0x6c), w(0x70), w(0x48), w(0x50), \
++        w(0xfd), w(0xed), w(0xb9), w(0xda), w(0x5e), w(0x15), w(0x46), \
++        w(0x57), w(0xa7), w(0x8d), w(0x9d), w(0x84), w(0x90), w(0xd8), \
++        w(0xab), w(0x00), w(0x8c), w(0xbc), w(0xd3), w(0x0a), w(0xf7), \
++        w(0xe4), w(0x58), w(0x05), w(0xb8), w(0xb3), w(0x45), w(0x06), \
++        w(0xd0), w(0x2c), w(0x1e), w(0x8f), w(0xca), w(0x3f), w(0x0f), \
++        w(0x02), w(0xc1), w(0xaf), w(0xbd), w(0x03), w(0x01), w(0x13), \
++        w(0x8a), w(0x6b), w(0x3a), w(0x91), w(0x11), w(0x41), w(0x4f), \
++        w(0x67), w(0xdc), w(0xea), w(0x97), w(0xf2), w(0xcf), w(0xce), \
++        w(0xf0), w(0xb4), w(0xe6), w(0x73), w(0x96), w(0xac), w(0x74), \
++        w(0x22), w(0xe7), w(0xad), w(0x35), w(0x85), w(0xe2), w(0xf9), \
++        w(0x37), w(0xe8), w(0x1c), w(0x75), w(0xdf), w(0x6e), w(0x47), \
++        w(0xf1), w(0x1a), w(0x71), w(0x1d), w(0x29), w(0xc5), w(0x89), \
++        w(0x6f), w(0xb7), w(0x62), w(0x0e), w(0xaa), w(0x18), w(0xbe), \
++        w(0x1b), w(0xfc), w(0x56), w(0x3e), w(0x4b), w(0xc6), w(0xd2), \
++        w(0x79), w(0x20), w(0x9a), w(0xdb), w(0xc0), w(0xfe), w(0x78), \
++        w(0xcd), w(0x5a), w(0xf4), w(0x1f), w(0xdd), w(0xa8), w(0x33), \
++        w(0x88), w(0x07), w(0xc7), w(0x31), w(0xb1), w(0x12), w(0x10), \
++        w(0x59), w(0x27), w(0x80), w(0xec), w(0x5f), w(0x60), w(0x51), \
++        w(0x7f), w(0xa9), w(0x19), w(0xb5), w(0x4a), w(0x0d), w(0x2d), \
++        w(0xe5), w(0x7a), w(0x9f), w(0x93), w(0xc9), w(0x9c), w(0xef), \
++        w(0xa0), w(0xe0), w(0x3b), w(0x4d), w(0xae), w(0x2a), w(0xf5), \
++        w(0xb0), w(0xc8), w(0xeb), w(0xbb), w(0x3c), w(0x83), w(0x53), \
++        w(0x99), w(0x61), w(0x17), w(0x2b), w(0x04), w(0x7e), w(0xba), \
++        w(0x77), w(0xd6), w(0x26), w(0xe1), w(0x69), w(0x14), w(0x63), \
++        w(0x55), w(0x21), w(0x0c), w(0x7d)                             \
++    }
++/* clang-format on */
++
++/* X Macro trick. See https://en.wikipedia.org/wiki/X_Macro */
++#define SSE2NEON_AES_H0(x) (x)
++static const uint8_t _sse2neon_sbox[256] = SSE2NEON_AES_SBOX(SSE2NEON_AES_H0);
++static const uint8_t _sse2neon_rsbox[256] = SSE2NEON_AES_RSBOX(SSE2NEON_AES_H0);
++#undef SSE2NEON_AES_H0
++
++/* x_time function and matrix multiply function */
++#if !defined(__aarch64__) && !defined(_M_ARM64)
++#define SSE2NEON_XT(x) (((x) << 1) ^ ((((x) >> 7) & 1) * 0x1b))
++#define SSE2NEON_MULTIPLY(x, y)                                  \
++    (((y & 1) * x) ^ ((y >> 1 & 1) * SSE2NEON_XT(x)) ^           \
++     ((y >> 2 & 1) * SSE2NEON_XT(SSE2NEON_XT(x))) ^              \
++     ((y >> 3 & 1) * SSE2NEON_XT(SSE2NEON_XT(SSE2NEON_XT(x)))) ^ \
++     ((y >> 4 & 1) * SSE2NEON_XT(SSE2NEON_XT(SSE2NEON_XT(SSE2NEON_XT(x))))))
++#endif
++
++// In the absence of crypto extensions, implement aesenc using regular NEON
++// intrinsics instead. See:
++// https://www.workofard.com/2017/01/accelerated-aes-for-the-arm64-linux-kernel/
++// https://www.workofard.com/2017/07/ghash-for-low-end-cores/ and
++// for more information.
++FORCE_INLINE __m128i _mm_aesenc_si128(__m128i a, __m128i RoundKey)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    static const uint8_t shift_rows[] = {
++        0x0, 0x5, 0xa, 0xf, 0x4, 0x9, 0xe, 0x3,
++        0x8, 0xd, 0x2, 0x7, 0xc, 0x1, 0x6, 0xb,
++    };
++    static const uint8_t ror32by8[] = {
++        0x1, 0x2, 0x3, 0x0, 0x5, 0x6, 0x7, 0x4,
++        0x9, 0xa, 0xb, 0x8, 0xd, 0xe, 0xf, 0xc,
++    };
++
++    uint8x16_t v;
++    uint8x16_t w = vreinterpretq_u8_m128i(a);
++
++    /* shift rows */
++    w = vqtbl1q_u8(w, vld1q_u8(shift_rows));
++
++    /* sub bytes */
++    // Here, we separate the whole 256-bytes table into 4 64-bytes tables, and
++    // look up each of the table. After each lookup, we load the next table
++    // which locates at the next 64-bytes. In the meantime, the index in the
++    // table would be smaller than it was, so the index parameters of
++    // `vqtbx4q_u8()` need to be added the same constant as the loaded tables.
++    v = vqtbl4q_u8(_sse2neon_vld1q_u8_x4(_sse2neon_sbox), w);
++    // 'w-0x40' equals to 'vsubq_u8(w, vdupq_n_u8(0x40))'
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_sbox + 0x40), w - 0x40);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_sbox + 0x80), w - 0x80);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_sbox + 0xc0), w - 0xc0);
++
++    /* mix columns */
++    w = (v << 1) ^ (uint8x16_t) (((int8x16_t) v >> 7) & 0x1b);
++    w ^= (uint8x16_t) vrev32q_u16((uint16x8_t) v);
++    w ^= vqtbl1q_u8(v ^ w, vld1q_u8(ror32by8));
++
++    /* add round key */
++    return vreinterpretq_m128i_u8(w) ^ RoundKey;
++
++#else /* ARMv7-A implementation for a table-based AES */
++#define SSE2NEON_AES_B2W(b0, b1, b2, b3)                 \
++    (((uint32_t) (b3) << 24) | ((uint32_t) (b2) << 16) | \
++     ((uint32_t) (b1) << 8) | (uint32_t) (b0))
++// muliplying 'x' by 2 in GF(2^8)
++#define SSE2NEON_AES_F2(x) ((x << 1) ^ (((x >> 7) & 1) * 0x011b /* WPOLY */))
++// muliplying 'x' by 3 in GF(2^8)
++#define SSE2NEON_AES_F3(x) (SSE2NEON_AES_F2(x) ^ x)
++#define SSE2NEON_AES_U0(p) \
++    SSE2NEON_AES_B2W(SSE2NEON_AES_F2(p), p, p, SSE2NEON_AES_F3(p))
++#define SSE2NEON_AES_U1(p) \
++    SSE2NEON_AES_B2W(SSE2NEON_AES_F3(p), SSE2NEON_AES_F2(p), p, p)
++#define SSE2NEON_AES_U2(p) \
++    SSE2NEON_AES_B2W(p, SSE2NEON_AES_F3(p), SSE2NEON_AES_F2(p), p)
++#define SSE2NEON_AES_U3(p) \
++    SSE2NEON_AES_B2W(p, p, SSE2NEON_AES_F3(p), SSE2NEON_AES_F2(p))
++
++    // this generates a table containing every possible permutation of
++    // shift_rows() and sub_bytes() with mix_columns().
++    static const uint32_t ALIGN_STRUCT(16) aes_table[4][256] = {
++        SSE2NEON_AES_SBOX(SSE2NEON_AES_U0),
++        SSE2NEON_AES_SBOX(SSE2NEON_AES_U1),
++        SSE2NEON_AES_SBOX(SSE2NEON_AES_U2),
++        SSE2NEON_AES_SBOX(SSE2NEON_AES_U3),
++    };
++#undef SSE2NEON_AES_B2W
++#undef SSE2NEON_AES_F2
++#undef SSE2NEON_AES_F3
++#undef SSE2NEON_AES_U0
++#undef SSE2NEON_AES_U1
++#undef SSE2NEON_AES_U2
++#undef SSE2NEON_AES_U3
++
++    uint32_t x0 = _mm_cvtsi128_si32(a);  // get a[31:0]
++    uint32_t x1 =
++        _mm_cvtsi128_si32(_mm_shuffle_epi32(a, 0x55));  // get a[63:32]
++    uint32_t x2 =
++        _mm_cvtsi128_si32(_mm_shuffle_epi32(a, 0xAA));  // get a[95:64]
++    uint32_t x3 =
++        _mm_cvtsi128_si32(_mm_shuffle_epi32(a, 0xFF));  // get a[127:96]
++
++    // finish the modulo addition step in mix_columns()
++    __m128i out = _mm_set_epi32(
++        (aes_table[0][x3 & 0xff] ^ aes_table[1][(x0 >> 8) & 0xff] ^
++         aes_table[2][(x1 >> 16) & 0xff] ^ aes_table[3][x2 >> 24]),
++        (aes_table[0][x2 & 0xff] ^ aes_table[1][(x3 >> 8) & 0xff] ^
++         aes_table[2][(x0 >> 16) & 0xff] ^ aes_table[3][x1 >> 24]),
++        (aes_table[0][x1 & 0xff] ^ aes_table[1][(x2 >> 8) & 0xff] ^
++         aes_table[2][(x3 >> 16) & 0xff] ^ aes_table[3][x0 >> 24]),
++        (aes_table[0][x0 & 0xff] ^ aes_table[1][(x1 >> 8) & 0xff] ^
++         aes_table[2][(x2 >> 16) & 0xff] ^ aes_table[3][x3 >> 24]));
++
++    return _mm_xor_si128(out, RoundKey);
++#endif
++}
++
++// Perform one round of an AES decryption flow on data (state) in a using the
++// round key in RoundKey, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_aesdec_si128
++FORCE_INLINE __m128i _mm_aesdec_si128(__m128i a, __m128i RoundKey)
++{
++#if defined(__aarch64__)
++    static const uint8_t inv_shift_rows[] = {
++        0x0, 0xd, 0xa, 0x7, 0x4, 0x1, 0xe, 0xb,
++        0x8, 0x5, 0x2, 0xf, 0xc, 0x9, 0x6, 0x3,
++    };
++    static const uint8_t ror32by8[] = {
++        0x1, 0x2, 0x3, 0x0, 0x5, 0x6, 0x7, 0x4,
++        0x9, 0xa, 0xb, 0x8, 0xd, 0xe, 0xf, 0xc,
++    };
++
++    uint8x16_t v;
++    uint8x16_t w = vreinterpretq_u8_m128i(a);
++
++    // inverse shift rows
++    w = vqtbl1q_u8(w, vld1q_u8(inv_shift_rows));
++
++    // inverse sub bytes
++    v = vqtbl4q_u8(_sse2neon_vld1q_u8_x4(_sse2neon_rsbox), w);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_rsbox + 0x40), w - 0x40);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_rsbox + 0x80), w - 0x80);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_rsbox + 0xc0), w - 0xc0);
++
++    // inverse mix columns
++    // multiplying 'v' by 4 in GF(2^8)
++    w = (v << 1) ^ (uint8x16_t) (((int8x16_t) v >> 7) & 0x1b);
++    w = (w << 1) ^ (uint8x16_t) (((int8x16_t) w >> 7) & 0x1b);
++    v ^= w;
++    v ^= (uint8x16_t) vrev32q_u16((uint16x8_t) w);
++
++    w = (v << 1) ^ (uint8x16_t) (((int8x16_t) v >> 7) &
++                                 0x1b);  // muliplying 'v' by 2 in GF(2^8)
++    w ^= (uint8x16_t) vrev32q_u16((uint16x8_t) v);
++    w ^= vqtbl1q_u8(v ^ w, vld1q_u8(ror32by8));
++
++    // add round key
++    return vreinterpretq_m128i_u8(w) ^ RoundKey;
++
++#else /* ARMv7-A NEON implementation */
++    /* FIXME: optimized for NEON */
++    uint8_t i, e, f, g, h, v[4][4];
++    uint8_t *_a = (uint8_t *) &a;
++    for (i = 0; i < 16; ++i) {
++        v[((i / 4) + (i % 4)) % 4][i % 4] = _sse2neon_rsbox[_a[i]];
++    }
++
++    // inverse mix columns
++    for (i = 0; i < 4; ++i) {
++        e = v[i][0];
++        f = v[i][1];
++        g = v[i][2];
++        h = v[i][3];
++
++        v[i][0] = SSE2NEON_MULTIPLY(e, 0x0e) ^ SSE2NEON_MULTIPLY(f, 0x0b) ^
++                  SSE2NEON_MULTIPLY(g, 0x0d) ^ SSE2NEON_MULTIPLY(h, 0x09);
++        v[i][1] = SSE2NEON_MULTIPLY(e, 0x09) ^ SSE2NEON_MULTIPLY(f, 0x0e) ^
++                  SSE2NEON_MULTIPLY(g, 0x0b) ^ SSE2NEON_MULTIPLY(h, 0x0d);
++        v[i][2] = SSE2NEON_MULTIPLY(e, 0x0d) ^ SSE2NEON_MULTIPLY(f, 0x09) ^
++                  SSE2NEON_MULTIPLY(g, 0x0e) ^ SSE2NEON_MULTIPLY(h, 0x0b);
++        v[i][3] = SSE2NEON_MULTIPLY(e, 0x0b) ^ SSE2NEON_MULTIPLY(f, 0x0d) ^
++                  SSE2NEON_MULTIPLY(g, 0x09) ^ SSE2NEON_MULTIPLY(h, 0x0e);
++    }
++
++    return vreinterpretq_m128i_u8(vld1q_u8((uint8_t *) v)) ^ RoundKey;
++#endif
++}
++
++// Perform the last round of an AES encryption flow on data (state) in a using
++// the round key in RoundKey, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_aesenclast_si128
++FORCE_INLINE __m128i _mm_aesenclast_si128(__m128i a, __m128i RoundKey)
++{
++#if defined(__aarch64__)
++    static const uint8_t shift_rows[] = {
++        0x0, 0x5, 0xa, 0xf, 0x4, 0x9, 0xe, 0x3,
++        0x8, 0xd, 0x2, 0x7, 0xc, 0x1, 0x6, 0xb,
++    };
++
++    uint8x16_t v;
++    uint8x16_t w = vreinterpretq_u8_m128i(a);
++
++    // shift rows
++    w = vqtbl1q_u8(w, vld1q_u8(shift_rows));
++
++    // sub bytes
++    v = vqtbl4q_u8(_sse2neon_vld1q_u8_x4(_sse2neon_sbox), w);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_sbox + 0x40), w - 0x40);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_sbox + 0x80), w - 0x80);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_sbox + 0xc0), w - 0xc0);
++
++    // add round key
++    return vreinterpretq_m128i_u8(v) ^ RoundKey;
++
++#else /* ARMv7-A implementation */
++    uint8_t v[16] = {
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 0)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 5)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 10)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 15)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 4)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 9)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 14)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 3)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 8)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 13)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 2)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 7)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 12)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 1)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 6)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 11)],
++    };
++
++    return vreinterpretq_m128i_u8(vld1q_u8(v)) ^ RoundKey;
++#endif
++}
++
++// Perform the last round of an AES decryption flow on data (state) in a using
++// the round key in RoundKey, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_aesdeclast_si128
++FORCE_INLINE __m128i _mm_aesdeclast_si128(__m128i a, __m128i RoundKey)
++{
++#if defined(__aarch64__)
++    static const uint8_t inv_shift_rows[] = {
++        0x0, 0xd, 0xa, 0x7, 0x4, 0x1, 0xe, 0xb,
++        0x8, 0x5, 0x2, 0xf, 0xc, 0x9, 0x6, 0x3,
++    };
++
++    uint8x16_t v;
++    uint8x16_t w = vreinterpretq_u8_m128i(a);
++
++    // inverse shift rows
++    w = vqtbl1q_u8(w, vld1q_u8(inv_shift_rows));
++
++    // inverse sub bytes
++    v = vqtbl4q_u8(_sse2neon_vld1q_u8_x4(_sse2neon_rsbox), w);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_rsbox + 0x40), w - 0x40);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_rsbox + 0x80), w - 0x80);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_rsbox + 0xc0), w - 0xc0);
++
++    // add round key
++    return vreinterpretq_m128i_u8(v) ^ RoundKey;
++
++#else /* ARMv7-A NEON implementation */
++    /* FIXME: optimized for NEON */
++    uint8_t v[4][4];
++    uint8_t *_a = (uint8_t *) &a;
++    for (int i = 0; i < 16; ++i) {
++        v[((i / 4) + (i % 4)) % 4][i % 4] = _sse2neon_rsbox[_a[i]];
++    }
++
++    return vreinterpretq_m128i_u8(vld1q_u8((uint8_t *) v)) ^ RoundKey;
++#endif
++}
++
++// Perform the InvMixColumns transformation on a and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_aesimc_si128
++FORCE_INLINE __m128i _mm_aesimc_si128(__m128i a)
++{
++#if defined(__aarch64__)
++    static const uint8_t ror32by8[] = {
++        0x1, 0x2, 0x3, 0x0, 0x5, 0x6, 0x7, 0x4,
++        0x9, 0xa, 0xb, 0x8, 0xd, 0xe, 0xf, 0xc,
++    };
++    uint8x16_t v = vreinterpretq_u8_m128i(a);
++    uint8x16_t w;
++
++    // multiplying 'v' by 4 in GF(2^8)
++    w = (v << 1) ^ (uint8x16_t) (((int8x16_t) v >> 7) & 0x1b);
++    w = (w << 1) ^ (uint8x16_t) (((int8x16_t) w >> 7) & 0x1b);
++    v ^= w;
++    v ^= (uint8x16_t) vrev32q_u16((uint16x8_t) w);
++
++    // multiplying 'v' by 2 in GF(2^8)
++    w = (v << 1) ^ (uint8x16_t) (((int8x16_t) v >> 7) & 0x1b);
++    w ^= (uint8x16_t) vrev32q_u16((uint16x8_t) v);
++    w ^= vqtbl1q_u8(v ^ w, vld1q_u8(ror32by8));
++    return vreinterpretq_m128i_u8(w);
++
++#else /* ARMv7-A NEON implementation */
++    uint8_t i, e, f, g, h, v[4][4];
++    vst1q_u8((uint8_t *) v, vreinterpretq_u8_m128i(a));
++    for (i = 0; i < 4; ++i) {
++        e = v[i][0];
++        f = v[i][1];
++        g = v[i][2];
++        h = v[i][3];
++
++        v[i][0] = SSE2NEON_MULTIPLY(e, 0x0e) ^ SSE2NEON_MULTIPLY(f, 0x0b) ^
++                  SSE2NEON_MULTIPLY(g, 0x0d) ^ SSE2NEON_MULTIPLY(h, 0x09);
++        v[i][1] = SSE2NEON_MULTIPLY(e, 0x09) ^ SSE2NEON_MULTIPLY(f, 0x0e) ^
++                  SSE2NEON_MULTIPLY(g, 0x0b) ^ SSE2NEON_MULTIPLY(h, 0x0d);
++        v[i][2] = SSE2NEON_MULTIPLY(e, 0x0d) ^ SSE2NEON_MULTIPLY(f, 0x09) ^
++                  SSE2NEON_MULTIPLY(g, 0x0e) ^ SSE2NEON_MULTIPLY(h, 0x0b);
++        v[i][3] = SSE2NEON_MULTIPLY(e, 0x0b) ^ SSE2NEON_MULTIPLY(f, 0x0d) ^
++                  SSE2NEON_MULTIPLY(g, 0x09) ^ SSE2NEON_MULTIPLY(h, 0x0e);
++    }
++
++    return vreinterpretq_m128i_u8(vld1q_u8((uint8_t *) v));
++#endif
++}
++
++// Assist in expanding the AES cipher key by computing steps towards generating
++// a round key for encryption cipher using data from a and an 8-bit round
++// constant specified in imm8, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_aeskeygenassist_si128
++//
++// Emits the Advanced Encryption Standard (AES) instruction aeskeygenassist.
++// This instruction generates a round key for AES encryption. See
++// https://kazakov.life/2017/11/01/cryptocurrency-mining-on-ios-devices/
++// for details.
++FORCE_INLINE __m128i _mm_aeskeygenassist_si128(__m128i a, const int rcon)
++{
++#if defined(__aarch64__)
++    uint8x16_t _a = vreinterpretq_u8_m128i(a);
++    uint8x16_t v = vqtbl4q_u8(_sse2neon_vld1q_u8_x4(_sse2neon_sbox), _a);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_sbox + 0x40), _a - 0x40);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_sbox + 0x80), _a - 0x80);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_sbox + 0xc0), _a - 0xc0);
++
++    uint32x4_t v_u32 = vreinterpretq_u32_u8(v);
++    uint32x4_t ror_v = vorrq_u32(vshrq_n_u32(v_u32, 8), vshlq_n_u32(v_u32, 24));
++    uint32x4_t ror_xor_v = veorq_u32(ror_v, vdupq_n_u32(rcon));
++
++    return vreinterpretq_m128i_u32(vtrn2q_u32(v_u32, ror_xor_v));
++
++#else /* ARMv7-A NEON implementation */
++    uint32_t X1 = _mm_cvtsi128_si32(_mm_shuffle_epi32(a, 0x55));
++    uint32_t X3 = _mm_cvtsi128_si32(_mm_shuffle_epi32(a, 0xFF));
++    for (int i = 0; i < 4; ++i) {
++        ((uint8_t *) &X1)[i] = _sse2neon_sbox[((uint8_t *) &X1)[i]];
++        ((uint8_t *) &X3)[i] = _sse2neon_sbox[((uint8_t *) &X3)[i]];
++    }
++    return _mm_set_epi32(((X3 >> 8) | (X3 << 24)) ^ rcon, X3,
++                         ((X1 >> 8) | (X1 << 24)) ^ rcon, X1);
++#endif
++}
++#undef SSE2NEON_AES_SBOX
++#undef SSE2NEON_AES_RSBOX
++
++#if defined(__aarch64__)
++#undef SSE2NEON_XT
++#undef SSE2NEON_MULTIPLY
++#endif
++
++#else /* __ARM_FEATURE_CRYPTO */
++// Implements equivalent of 'aesenc' by combining AESE (with an empty key) and
++// AESMC and then manually applying the real key as an xor operation. This
++// unfortunately means an additional xor op; the compiler should be able to
++// optimize this away for repeated calls however. See
++// https://blog.michaelbrase.com/2018/05/08/emulating-x86-aes-intrinsics-on-armv8-a
++// for more details.
++FORCE_INLINE __m128i _mm_aesenc_si128(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u8(veorq_u8(
++        vaesmcq_u8(vaeseq_u8(vreinterpretq_u8_m128i(a), vdupq_n_u8(0))),
++        vreinterpretq_u8_m128i(b)));
++}
++
++// Perform one round of an AES decryption flow on data (state) in a using the
++// round key in RoundKey, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_aesdec_si128
++FORCE_INLINE __m128i _mm_aesdec_si128(__m128i a, __m128i RoundKey)
++{
++    return vreinterpretq_m128i_u8(veorq_u8(
++        vaesimcq_u8(vaesdq_u8(vreinterpretq_u8_m128i(a), vdupq_n_u8(0))),
++        vreinterpretq_u8_m128i(RoundKey)));
++}
++
++// Perform the last round of an AES encryption flow on data (state) in a using
++// the round key in RoundKey, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_aesenclast_si128
++FORCE_INLINE __m128i _mm_aesenclast_si128(__m128i a, __m128i RoundKey)
++{
++    return _mm_xor_si128(vreinterpretq_m128i_u8(vaeseq_u8(
++                             vreinterpretq_u8_m128i(a), vdupq_n_u8(0))),
++                         RoundKey);
++}
++
++// Perform the last round of an AES decryption flow on data (state) in a using
++// the round key in RoundKey, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_aesdeclast_si128
++FORCE_INLINE __m128i _mm_aesdeclast_si128(__m128i a, __m128i RoundKey)
++{
++    return vreinterpretq_m128i_u8(
++        veorq_u8(vaesdq_u8(vreinterpretq_u8_m128i(a), vdupq_n_u8(0)),
++                 vreinterpretq_u8_m128i(RoundKey)));
++}
++
++// Perform the InvMixColumns transformation on a and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_aesimc_si128
++FORCE_INLINE __m128i _mm_aesimc_si128(__m128i a)
++{
++    return vreinterpretq_m128i_u8(vaesimcq_u8(vreinterpretq_u8_m128i(a)));
++}
++
++// Assist in expanding the AES cipher key by computing steps towards generating
++// a round key for encryption cipher using data from a and an 8-bit round
++// constant specified in imm8, and store the result in dst."
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_aeskeygenassist_si128
++FORCE_INLINE __m128i _mm_aeskeygenassist_si128(__m128i a, const int rcon)
++{
++    // AESE does ShiftRows and SubBytes on A
++    uint8x16_t u8 = vaeseq_u8(vreinterpretq_u8_m128i(a), vdupq_n_u8(0));
++
++#ifndef _MSC_VER
++    uint8x16_t dest = {
++        // Undo ShiftRows step from AESE and extract X1 and X3
++        u8[0x4], u8[0x1], u8[0xE], u8[0xB],  // SubBytes(X1)
++        u8[0x1], u8[0xE], u8[0xB], u8[0x4],  // ROT(SubBytes(X1))
++        u8[0xC], u8[0x9], u8[0x6], u8[0x3],  // SubBytes(X3)
++        u8[0x9], u8[0x6], u8[0x3], u8[0xC],  // ROT(SubBytes(X3))
++    };
++    uint32x4_t r = {0, (unsigned) rcon, 0, (unsigned) rcon};
++    return vreinterpretq_m128i_u8(dest) ^ vreinterpretq_m128i_u32(r);
++#else
++    // We have to do this hack because MSVC is strictly adhering to the CPP
++    // standard, in particular C++03 8.5.1 sub-section 15, which states that
++    // unions must be initialized by their first member type.
++
++    // As per the Windows ARM64 ABI, it is always little endian, so this works
++    __n128 dest{
++        ((uint64_t) u8.n128_u8[0x4] << 0) | ((uint64_t) u8.n128_u8[0x1] << 8) |
++            ((uint64_t) u8.n128_u8[0xE] << 16) |
++            ((uint64_t) u8.n128_u8[0xB] << 24) |
++            ((uint64_t) u8.n128_u8[0x1] << 32) |
++            ((uint64_t) u8.n128_u8[0xE] << 40) |
++            ((uint64_t) u8.n128_u8[0xB] << 48) |
++            ((uint64_t) u8.n128_u8[0x4] << 56),
++        ((uint64_t) u8.n128_u8[0xC] << 0) | ((uint64_t) u8.n128_u8[0x9] << 8) |
++            ((uint64_t) u8.n128_u8[0x6] << 16) |
++            ((uint64_t) u8.n128_u8[0x3] << 24) |
++            ((uint64_t) u8.n128_u8[0x9] << 32) |
++            ((uint64_t) u8.n128_u8[0x6] << 40) |
++            ((uint64_t) u8.n128_u8[0x3] << 48) |
++            ((uint64_t) u8.n128_u8[0xC] << 56)};
++
++    dest.n128_u32[1] = dest.n128_u32[1] ^ rcon;
++    dest.n128_u32[3] = dest.n128_u32[3] ^ rcon;
++
++    return dest;
++#endif
++}
++#endif
++
++/* Others */
++
++// Perform a carry-less multiplication of two 64-bit integers, selected from a
++// and b according to imm8, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_clmulepi64_si128
++FORCE_INLINE __m128i _mm_clmulepi64_si128(__m128i _a, __m128i _b, const int imm)
++{
++    uint64x2_t a = vreinterpretq_u64_m128i(_a);
++    uint64x2_t b = vreinterpretq_u64_m128i(_b);
++    switch (imm & 0x11) {
++    case 0x00:
++        return vreinterpretq_m128i_u64(
++            _sse2neon_vmull_p64(vget_low_u64(a), vget_low_u64(b)));
++    case 0x01:
++        return vreinterpretq_m128i_u64(
++            _sse2neon_vmull_p64(vget_high_u64(a), vget_low_u64(b)));
++    case 0x10:
++        return vreinterpretq_m128i_u64(
++            _sse2neon_vmull_p64(vget_low_u64(a), vget_high_u64(b)));
++    case 0x11:
++        return vreinterpretq_m128i_u64(
++            _sse2neon_vmull_p64(vget_high_u64(a), vget_high_u64(b)));
++    default:
++        abort();
++    }
++}
++
++FORCE_INLINE unsigned int _sse2neon_mm_get_denormals_zero_mode(void)
++{
++    union {
++        fpcr_bitfield field;
++#if defined(__aarch64__) || defined(_M_ARM64)
++        uint64_t value;
++#else
++        uint32_t value;
++#endif
++    } r;
++
++#if defined(__aarch64__) || defined(_M_ARM64)
++    r.value = _sse2neon_get_fpcr();
++#else
++    __asm__ __volatile__("vmrs %0, FPSCR" : "=r"(r.value)); /* read */
++#endif
++
++    return r.field.bit24 ? _MM_DENORMALS_ZERO_ON : _MM_DENORMALS_ZERO_OFF;
++}
++
++// Count the number of bits set to 1 in unsigned 32-bit integer a, and
++// return that count in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_popcnt_u32
++FORCE_INLINE int _mm_popcnt_u32(unsigned int a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++#if __has_builtin(__builtin_popcount)
++    return __builtin_popcount(a);
++#elif defined(_MSC_VER)
++    return _CountOneBits(a);
++#else
++    return (int) vaddlv_u8(vcnt_u8(vcreate_u8((uint64_t) a)));
++#endif
++#else
++    uint32_t count = 0;
++    uint8x8_t input_val, count8x8_val;
++    uint16x4_t count16x4_val;
++    uint32x2_t count32x2_val;
++
++    input_val = vld1_u8((uint8_t *) &a);
++    count8x8_val = vcnt_u8(input_val);
++    count16x4_val = vpaddl_u8(count8x8_val);
++    count32x2_val = vpaddl_u16(count16x4_val);
++
++    vst1_u32(&count, count32x2_val);
++    return count;
++#endif
++}
++
++// Count the number of bits set to 1 in unsigned 64-bit integer a, and
++// return that count in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_popcnt_u64
++FORCE_INLINE int64_t _mm_popcnt_u64(uint64_t a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++#if __has_builtin(__builtin_popcountll)
++    return __builtin_popcountll(a);
++#elif defined(_MSC_VER)
++    return _CountOneBits64(a);
++#else
++    return (int64_t) vaddlv_u8(vcnt_u8(vcreate_u8(a)));
++#endif
++#else
++    uint64_t count = 0;
++    uint8x8_t input_val, count8x8_val;
++    uint16x4_t count16x4_val;
++    uint32x2_t count32x2_val;
++    uint64x1_t count64x1_val;
++
++    input_val = vld1_u8((uint8_t *) &a);
++    count8x8_val = vcnt_u8(input_val);
++    count16x4_val = vpaddl_u8(count8x8_val);
++    count32x2_val = vpaddl_u16(count16x4_val);
++    count64x1_val = vpaddl_u32(count32x2_val);
++    vst1_u64(&count, count64x1_val);
++    return count;
++#endif
++}
++
++FORCE_INLINE void _sse2neon_mm_set_denormals_zero_mode(unsigned int flag)
++{
++    // AArch32 Advanced SIMD arithmetic always uses the Flush-to-zero setting,
++    // regardless of the value of the FZ bit.
++    union {
++        fpcr_bitfield field;
++#if defined(__aarch64__) || defined(_M_ARM64)
++        uint64_t value;
++#else
++        uint32_t value;
++#endif
++    } r;
++
++#if defined(__aarch64__) || defined(_M_ARM64)
++    r.value = _sse2neon_get_fpcr();
++#else
++    __asm__ __volatile__("vmrs %0, FPSCR" : "=r"(r.value)); /* read */
++#endif
++
++    r.field.bit24 = (flag & _MM_DENORMALS_ZERO_MASK) == _MM_DENORMALS_ZERO_ON;
++
++#if defined(__aarch64__) || defined(_M_ARM64)
++    _sse2neon_set_fpcr(r.value);
++#else
++    __asm__ __volatile__("vmsr FPSCR, %0" ::"r"(r));        /* write */
++#endif
++}
++
++// Return the current 64-bit value of the processor's time-stamp counter.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=rdtsc
++FORCE_INLINE uint64_t _rdtsc(void)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    uint64_t val;
++
++    /* According to ARM DDI 0487F.c, from Armv8.0 to Armv8.5 inclusive, the
++     * system counter is at least 56 bits wide; from Armv8.6, the counter
++     * must be 64 bits wide.  So the system counter could be less than 64
++     * bits wide and it is attributed with the flag 'cap_user_time_short'
++     * is true.
++     */
++#if defined(_MSC_VER)
++    val = _ReadStatusReg(ARM64_SYSREG(3, 3, 14, 0, 2));
++#else
++    __asm__ __volatile__("mrs %0, cntvct_el0" : "=r"(val));
++#endif
++
++    return val;
++#else
++    uint32_t pmccntr, pmuseren, pmcntenset;
++    // Read the user mode Performance Monitoring Unit (PMU)
++    // User Enable Register (PMUSERENR) access permissions.
++    __asm__ __volatile__("mrc p15, 0, %0, c9, c14, 0" : "=r"(pmuseren));
++    if (pmuseren & 1) {  // Allows reading PMUSERENR for user mode code.
++        __asm__ __volatile__("mrc p15, 0, %0, c9, c12, 1" : "=r"(pmcntenset));
++        if (pmcntenset & 0x80000000UL) {  // Is it counting?
++            __asm__ __volatile__("mrc p15, 0, %0, c9, c13, 0" : "=r"(pmccntr));
++            // The counter is set up to count every 64th cycle
++            return (uint64_t) (pmccntr) << 6;
++        }
++    }
++
++    // Fallback to syscall as we can't enable PMUSERENR in user mode.
++    struct timeval tv;
++    gettimeofday(&tv, NULL);
++    return (uint64_t) (tv.tv_sec) * 1000000 + tv.tv_usec;
++#endif
++}
++
++#if defined(__GNUC__) || defined(__clang__)
++#pragma pop_macro("ALIGN_STRUCT")
++#pragma pop_macro("FORCE_INLINE")
++#endif
++
++#if defined(__GNUC__) && !defined(__clang__)
++#pragma GCC pop_options
++#endif
++
++#endif
+
+From d7bf7a21aee97b995c8ad75d2c4f956c56d5d72d Mon Sep 17 00:00:00 2001
+From: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
+Date: Wed, 24 Apr 2024 16:16:14 +0300
+Subject: [PATCH 2/5] Make it possible to overwrite c++ flags per CPU
+ architecture
+
+Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
+---
+ src/makefile | 7 ++++---
+ 1 file changed, 4 insertions(+), 3 deletions(-)
+
+diff --git a/src/makefile b/src/makefile
+index a272bfa..d2010bd 100644
+--- a/src/makefile
++++ b/src/makefile
+@@ -2,9 +2,10 @@
+ 
+ all: main
+ 
+-CXX		= g++
+-FLAGS		= -I${PREFIX}/include -Wall -D NDEBUG -O3 -m64 -msse4.2 -mpopcnt -fPIC
+-LIB		= -lpthread -lstdc++ -lz -lm
++ARCH_FLAGS  = -m64 -msse4.2 -mpopcnt
++CXX		    = g++
++FLAGS		= -I${PREFIX}/include -Wall -D NDEBUG -O3 ${ARCH_FLAGS} -fPIC
++LIB		    = -lpthread -lstdc++ -lz -lm
+ SOURCE		= main.cpp GetData.cpp GSAlign.cpp ProcessCandidateAlignment.cpp KmerAnalysis.cpp tools.cpp SeqVariant.cpp DotPloting.cpp bwt_index.cpp bwt_search.cpp ksw2_alignment.cpp
+ HEADER		= structure.h
+ OBJECT		= $(SOURCE:%.cpp=%.o)
+
diff --git a/recipes/gseapy/meta.yaml b/recipes/gseapy/meta.yaml
index b6f4c6819c1b4..80f4af5e7a0e3 100644
--- a/recipes/gseapy/meta.yaml
+++ b/recipes/gseapy/meta.yaml
@@ -1,14 +1,16 @@
 package:
   name: gseapy
-  version: "1.0.5"
+  version: "1.1.3"
 
 source:
-  url: https://files.pythonhosted.org/packages/ce/34/f776fd7cc7b486446bc0ddfddc49d6d6563d7caf2c387e23c01ae92e34bf/gseapy-1.0.5.tar.gz
-  sha256: 933075a1569fac8729d71fe38b3e7d78b044528786f1e96f30ba566ad4d93c79
+  url: https://files.pythonhosted.org/packages/28/c2/7c03f74682de640b71ba9a9958c5c8a90867b0f4f9ffef2c15702113d47a/gseapy-1.1.3.tar.gz
+  sha256: 7f9218bb4014a862680d4d3e806e59bec8f81601e876a04495922da81da1b395
 
 build:
   entry_points:
     - gseapy = gseapy.__main__:main
+  run_exports:
+    - {{ pin_subpackage("gseapy", max_pin="x") }}
   skip: True  # [py2k or py == 36 ]
   number: 0
 
@@ -20,6 +22,7 @@ requirements:
     - wheel
     - setuptools
     - setuptools-rust
+    - tomli >=1.2.1
   run:
     - python
     - numpy >=1.13.0
@@ -27,6 +30,7 @@ requirements:
     - pandas >=0.16
     - matplotlib-base >=1.4.3
     - requests
+    - tomli >=1.2.1
 
 test:
   imports:
@@ -36,11 +40,14 @@ test:
 
 about:
   home: https://github.com/zqfang/gseapy
-  license: MIT License
+  license: MIT
   summary: 'Gene Set Enrichment Analysis in Python'
   license_family: MIT
+  license_file: LICENSE
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   container:
     # matplotlib needs opengl support
     extended-base: true
diff --git a/recipes/gsearch/build.sh b/recipes/gsearch/build.sh
index c4f31ae3a4136..255e702c00317 100644
--- a/recipes/gsearch/build.sh
+++ b/recipes/gsearch/build.sh
@@ -5,4 +5,4 @@
 export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="$(pwd)/.cargo"
 
 # build statically linked binary with Rust
-RUST_BACKTRACE=1 cargo install --features annembed_intel-mkl --verbose --path . --root $PREFIX
+RUST_BACKTRACE=1 cargo install --features annembed_intel-mkl,simdeez_f --verbose --path . --root $PREFIX
diff --git a/recipes/gsearch/build_failure.osx-64.yaml b/recipes/gsearch/build_failure.osx-64.yaml
deleted file mode 100644
index 2e8b5279f9afc..0000000000000
--- a/recipes/gsearch/build_failure.osx-64.yaml
+++ /dev/null
@@ -1,104 +0,0 @@
-recipe_sha: a757e7bcf784bac32f841424569be0135f9947f99404b0c044e4f2fab56298f4  # The commit at which this recipe failed to build.
-skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
-log: |2-
-               f32
-               f64
-  note: required by a bound in probminhash::superminhasher::SuperMinHash
-    --> /opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/.cargo/registry/src/github.com-1ecc6299db9ec823/probminhash-0.1.8/src/superminhasher.rs:92:28
-     |
-  92 | pub struct SuperMinHash<F: Float, T: Hash, H: HasherDefault> {
-     |                            ^^^^^ required by this bound in SuperMinHash
-
-  error[E0277]: the trait bound probminhash::superminhasher::NoHashHasher: Hash is not satisfied
-    --> /opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/.cargo/registry/src/github.com-1ecc6299db9ec823/kmerutils-0.0.7/src/sketching/seqminhash.rs:24:24
-     |
-  24 |     let mut sminhash : SuperMinHash<u32, NoHashHasher>= SuperMinHash::new(sketch_size, &bh);
-     |                        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ the trait Hash is not implemented for probminhash::superminhasher::NoHashHasher
-     |
-  note: required by a bound in probminhash::superminhasher::SuperMinHash
-    --> /opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/.cargo/registry/src/github.com-1ecc6299db9ec823/probminhash-0.1.8/src/superminhasher.rs:92:38
-     |
-  92 | pub struct SuperMinHash<F: Float, T: Hash, H: HasherDefault> {
-     |                                      ^^^^ required by this bound in SuperMinHash
-
-  error[E0277]: the trait bound u32: num::Float is not satisfied
-     --> /opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/.cargo/registry/src/github.com-1ecc6299db9ec823/kmerutils-0.0.7/src/sketching/seqminhash.rs:24:57
-      |
-  24  |     let mut sminhash : SuperMinHash<u32, NoHashHasher>= SuperMinHash::new(sketch_size, &bh);
-      |                                                         ^^^^^^^^^^^^^^^^^ the trait num::Float is not implemented for u32
-      |
-      = help: the following other types implement trait num::Float:
-                f32
-                f64
-  note: required by a bound in probminhash::superminhasher::SuperMinHash::<F, T, H>::new
-     --> /opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/.cargo/registry/src/github.com-1ecc6299db9ec823/probminhash-0.1.8/src/superminhasher.rs:113:10
-      |
-  113 | impl <F: Float  SampleUniform  std::fmt::Debug, T:Hash ,  H : HasherDefault> SuperMinHash<F, T, H> {
-      |          ^^^^^ required by this bound in SuperMinHash::<F, T, H>::new
-
-  error[E0277]: the trait bound probminhash::superminhasher::NoHashHasher: Hash is not satisfied
-     --> /opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/.cargo/registry/src/github.com-1ecc6299db9ec823/kmerutils-0.0.7/src/sketching/seqminhash.rs:24:57
-      |
-  24  |     let mut sminhash : SuperMinHash<u32, NoHashHasher>= SuperMinHash::new(sketch_size, &bh);
-      |                                                         ^^^^^^^^^^^^^^^^^ the trait Hash is not implemented for probminhash::superminhasher::NoHashHasher
-      |
-  note: required by a bound in probminhash::superminhasher::SuperMinHash::<F, T, H>::new
-     --> /opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/.cargo/registry/src/github.com-1ecc6299db9ec823/probminhash-0.1.8/src/superminhasher.rs:113:53
-      |
-  113 | impl <F: Float  SampleUniform  std::fmt::Debug, T:Hash ,  H : HasherDefault> SuperMinHash<F, T, H> {
-      |                                                     ^^^^ required by this bound in SuperMinHash::<F, T, H>::new
-
-  error[E0277]: the trait bound u32: num::Float is not satisfied
-    --> /opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/.cargo/registry/src/github.com-1ecc6299db9ec823/kmerutils-0.0.7/src/sketching/seqminhash.rs:24:57
-     |
-  24 |     let mut sminhash : SuperMinHash<u32, NoHashHasher>= SuperMinHash::new(sketch_size, &bh);
-     |                                                         ^^^^^^^^^^^^ the trait num::Float is not implemented for u32
-     |
-     = help: the following other types implement trait num::Float:
-               f32
-               f64
-  note: required by a bound in probminhash::superminhasher::SuperMinHash
-    --> /opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/.cargo/registry/src/github.com-1ecc6299db9ec823/probminhash-0.1.8/src/superminhasher.rs:92:28
-     |
-  92 | pub struct SuperMinHash<F: Float, T: Hash, H: HasherDefault> {
-     |                            ^^^^^ required by this bound in SuperMinHash
-
-  error[E0277]: the trait bound probminhash::superminhasher::NoHashHasher: Hash is not satisfied
-    --> /opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/.cargo/registry/src/github.com-1ecc6299db9ec823/kmerutils-0.0.7/src/sketching/seqminhash.rs:24:57
-     |
-  24 |     let mut sminhash : SuperMinHash<u32, NoHashHasher>= SuperMinHash::new(sketch_size, &bh);
-     |                                                         ^^^^^^^^^^^^ the trait Hash is not implemented for probminhash::superminhasher::NoHashHasher
-     |
-  note: required by a bound in probminhash::superminhasher::SuperMinHash
-    --> /opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/.cargo/registry/src/github.com-1ecc6299db9ec823/probminhash-0.1.8/src/superminhasher.rs:92:38
-     |
-  92 | pub struct SuperMinHash<F: Float, T: Hash, H: HasherDefault> {
-     |                                      ^^^^ required by this bound in SuperMinHash
-
-  Some errors have detailed explanations: E0107, E0277.
-  For more information about an error, try rustc --explain E0107.
-  error: could not compile kmerutils due to 7 previous errors
-
-  Caused by:
-    process didn't exit successfully: rustc --crate-name kmerutils --edition=2021 /opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/.cargo/registry/src/github.com-1ecc6299db9ec823/kmerutils-0.0.7/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' -C metadata=e577b0b5627b4f68 -C extra-filename=-e577b0b5627b4f68 --out-dir /opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps -L dependency=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps --extern bloom=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/libbloom-b042290736fb2c21.rmeta --extern clap=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/libclap-0e5c203b73694e8c.rmeta --extern crossbeam=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/libcrossbeam-26e83c0342dd1b90.rmeta --extern cuckoofilter=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/libcuckoofilter-7b2b60a32aee81ef.rmeta --extern env_logger=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/libenv_logger-1a3c6c9b35203a91.rmeta --extern fnv=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/libfnv-36ca22b81d6ef64e.rmeta --extern fxhash=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/libfxhash-ceb1768b1b16ddcd.rmeta --extern histogram=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/libhistogram-3a70a6b2fa5b3eb5.rmeta --extern hnsw_rs=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/libhnsw_rs-7b7760b4e8956c7a.rmeta --extern indexmap=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/libindexmap-684ec2db7e8e2771.rmeta --extern lazy_static=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/liblazy_static-a938bfd90d819d09.rmeta --extern log=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/liblog-62ef23b456af1749.rmeta --extern metrohash=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/libmetrohash-4249c76a367913c5.rmeta --extern multimap=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/libmultimap-27eb9f8b808ad9e4.rmeta --extern ndarray=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/libndarray-4a8af6554346deca.rmeta --extern needletail=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/libneedletail-74093466191669cd.rlib --extern num=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/libnum-722dbb8692acf49f.rmeta --extern num_cpus=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/libnum_cpus-2975b7a552267876.rmeta --extern parking_lot=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/libparking_lot-de9b1db1c4952286.rmeta --extern probminhash=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/libprobminhash-50fe35d6dd33ee8b.rmeta --extern rand=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/librand-3b86af9d9169e472.rmeta --extern rand_distr=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/librand_distr-b1483d48a6743dd1.rmeta --extern rand_xorshift=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/librand_xorshift-3b32a0de8818658d.rmeta --extern rand_xoshiro=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/librand_xoshiro-3fb444d2c1067b8d.rmeta --extern rayon=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/librayon-7fa37c0bbc464749.rmeta --extern redis=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/libredis-482eb422382e614d.rmeta --extern serde=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/libserde-3963c483b06466c2.rmeta --extern serde_json=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/libserde_json-5dac48cd2776f9c6.rmeta --extern wavelet_matrix=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/libwavelet_matrix-a852f4963c7d12bd.rmeta --extern wyhash=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/libwyhash-cbb0fc501026a983.rmeta --extern xdr_codec=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/deps/libxdr_codec-a37dee4acd904d76.rmeta --cap-lints allow -L native=/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target/release/build/bzip2-sys-25122d71c3cd00dd/out/lib -L native=/usr/local/Cellar/xz/5.4.3/lib (exit status: 1)
-  warning: build failed, waiting for other jobs to finish...
-  error: failed to compile gsearch v0.0.12 (/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work), intermediate artifacts can be found at /opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/target
-  Traceback (most recent call last):
-    File "/opt/mambaforge/envs/bioconda/bin/conda-mambabuild", line 10, in <module>
-      sys.exit(main())
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
-      call_conda_build(action, config)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
-      result = api.build(
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
-      return build_tree(
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
-      packages_from_this = build(metadata, stats,
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
-      utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
-      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
-      raise subprocess.CalledProcessError(proc.returncode, _args)
-  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/mambaforge/envs/bioconda/conda-bld/gsearch_1685356475155/work/conda_build.sh']' returned non-zero exit status 101.
-# Last 100 lines of the build log.
diff --git a/recipes/gsearch/meta.yaml b/recipes/gsearch/meta.yaml
index bfeed7e2c2a69..3149d4081ee0d 100644
--- a/recipes/gsearch/meta.yaml
+++ b/recipes/gsearch/meta.yaml
@@ -1,15 +1,17 @@
-{% set version = "0.1.2" %}
+{% set version = "0.1.9" %}
 
 package:
   name: gsearch
   version: {{ version }}
 
 build:
-  number: 6
+  number: 0
+  run_exports:
+      - {{ pin_subpackage('gsearch', max_pin="x.x") }}
   skip: True  # [osx]
 source:
-  url: https://github.com/jean-pierreBoth/gsearch/archive/v{{ version }}.tar.gz
-  sha256: 6625ee9d9bdb7df47a6aa3f848bd6a3157154aa7c7e5a95efe71c29732150a08
+  url: https://github.com/jianshu93/gsearch/archive/v{{ version }}.tar.gz
+  sha256: 21d87192f55a0826744e474c5e22add204b7d2b634bdc692d29ab88175a34c36
 
 requirements:
   build:
@@ -17,19 +19,17 @@ requirements:
     - {{ compiler('c') }}
     - rust >=1.39
     - make
-    - cmake 
-  host:
-    - zlib
-  run:
-    - zlib
+    - cmake
 
 test:
   commands:
-    - gsearchbin -h
+    - gsearch -h
 
 about:
   home: https://github.com/jean-pierreBoth/gsearch
   license: MIT
-  summary: gsearch is an ultra-fast and scalable microbial genome search program based on MinHash-like metric and graph-based approximate nearest neighbor search 
-    
-
+  summary: gsearch is an ultra-fast and scalable microbial genome search program based on MinHash-like metrics and graph-based approximate nearest neighbor search
+extra:
+  maintainers:
+   - Jean Pierre-Both
+   - Jianshu Zhao
diff --git a/recipes/gtdbtk/download-db.sh b/recipes/gtdbtk/download-db.sh
index c3c77b25d433c..236e3f44671c1 100755
--- a/recipes/gtdbtk/download-db.sh
+++ b/recipes/gtdbtk/download-db.sh
@@ -1,9 +1,9 @@
 set -e
 
 # Configuration
-N_FILES_IN_TAR=181718
-DB_URL="https://data.gtdb.ecogenomic.org/releases/release214/214.0/auxillary_files/gtdbtk_r214_data.tar.gz"
-TARGET_TAR_NAME="gtdbtk_r214_data.tar.gz"
+N_FILES_IN_TAR=241860
+DB_URL="https://data.gtdb.ecogenomic.org/releases/release220/220.0/auxillary_files/gtdbtk_package/full_package/gtdbtk_r220_data.tar.gz"
+TARGET_TAR_NAME="gtdbtk_r220_data.tar.gz"
 
 # Script variables (no need to configure)
 TARGET_DIR=${1:-$GTDBTK_DATA_PATH}
diff --git a/recipes/gtdbtk/meta.yaml b/recipes/gtdbtk/meta.yaml
index 611e22a30947f..3023022470731 100644
--- a/recipes/gtdbtk/meta.yaml
+++ b/recipes/gtdbtk/meta.yaml
@@ -1,16 +1,18 @@
 {% set name = "gtdbtk" %}
-{% set version = "2.3.2" %}
+{% set version = "2.4.0" %}
 package:
   name: {{ name|lower }}
   version: {{ version }}
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 80efd31e10007d835f56a3d6fdf039a59db3b6ba4be26b234692da5e688aa99f
+  sha256: e67bab2c8f3e47c7242c70236c78e85bb9dc4721636bbf5044b171f18f22b1f7
 build:
-  number: 0
+  number: 1
   noarch: python
   entry_points:
     - gtdbtk = gtdbtk.__main__:main
+  run_exports:
+    - {{ pin_subpackage('gtdbtk', max_pin="x") }}
 requirements:
   host:
     - pip
@@ -27,6 +29,7 @@ requirements:
     - mash >=2.0
     - tqdm >=4.35.0
     - pydantic >=1.9.2, <2
+    - skani >=0.2.0
 test:
   imports:
     - gtdbtk
diff --git a/recipes/gtdbtk/post-link.sh b/recipes/gtdbtk/post-link.sh
index 4ac76d7c003f8..ee340a4676c67 100644
--- a/recipes/gtdbtk/post-link.sh
+++ b/recipes/gtdbtk/post-link.sh
@@ -1,7 +1,7 @@
 #!/usr/bin/env bash
 
 echo "
-    GTDB-Tk v${PKG_VERSION} requires ~78G of external data which needs to be downloaded
+    GTDB-Tk v${PKG_VERSION} requires ~110G of external data which needs to be downloaded
     and extracted. This can be done automatically, or manually.
 
     Automatic:
@@ -12,11 +12,11 @@ echo "
     Manual:
 
         1. Manually download the latest reference data:
-            wget https://data.gtdb.ecogenomic.org/releases/release214/214.0/auxillary_files/gtdbtk_r214_data.tar.gz
+            wget https://data.gtdb.ecogenomic.org/releases/release220/220.0/auxillary_files/gtdbtk_package/full_package/gtdbtk_r220_data.tar.gz
 
         2. Extract the archive to a target directory:
-            tar -xvzf gtdbtk_r214_data.tar.gz -C \"/path/to/target/db\" --strip 1 > /dev/null
-            rm gtdbtk_r214_data.tar.gz
+            tar -xvzf gtdbtk_r220_data.tar.gz -C \"/path/to/target/db\" --strip 1 > /dev/null
+            rm gtdbtk_r220_data.tar.gz
 
         3. Set the GTDBTK_DATA_PATH environment variable by running:
             conda env config vars set GTDBTK_DATA_PATH=\"/path/to/target/db\"
diff --git a/recipes/gtfparse/build.sh b/recipes/gtfparse/build.sh
deleted file mode 100644
index 3786386a73c83..0000000000000
--- a/recipes/gtfparse/build.sh
+++ /dev/null
@@ -1,3 +0,0 @@
-#!/bin/bash
-
-$PYTHON setup.py install --single-version-externally-managed --record=record.txt
diff --git a/recipes/gtfparse/meta.yaml b/recipes/gtfparse/meta.yaml
index a60178d27a0c2..41e4bd86031e9 100644
--- a/recipes/gtfparse/meta.yaml
+++ b/recipes/gtfparse/meta.yaml
@@ -1,31 +1,32 @@
 {% set name = "gtfparse" %}
-{% set version = "1.2.1" %}
-{% set file_ext = "tar.gz" %}
-{% set hash_type = "sha256" %}
-{% set hash_value = "559d4d36b0bd5d4494f925cab3c00cd969783ebb6408fa025df92663965834b8" %}
+{% set version = "2.5.0" %}
+{% set sha256 = "9fea54811cd87f597a110a49dc1b1b6a3325ffb7d1f36ecc62c32d14d3eb9493" %}
 
 package:
-  name: '{{ name|lower }}'
-  version: '{{ version }}'
+  name: {{ name|lower }}
+  version: {{ version }}
 
 source:
-  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.{{ file_ext }}
-  '{{ hash_type }}': '{{ hash_value }}'
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/gtfparse-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
 
 build:
-  noarch: python
   number: 0
+  noarch: python
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
+  run_exports:
+    - {{ pin_subpackage('gtfparse', max_pin="x.x") }}
 
 requirements:
   host:
     - python
-    - numpy >=1.7,<2.0
-    - pandas >=0.15
-
+    - pip
   run:
     - python
-    - numpy >=1.7,<2.0
+    - polars >=0.20.2,<0.21.0
+    - numpy >=1.7
     - pandas >=0.15
+    - pyarrow >=14.0.2
 
 test:
   imports:
@@ -33,6 +34,8 @@ test:
 
 about:
   home: https://github.com/openvax/gtfparse
-  license: Apache 2.0
   summary: 'GTF Parsing'
-  license_family: APACHE
+  license: Apache-2.0
+  license_family: Apache
+  license_file: LICENSE
+  dev_url: https://github.com/openvax/gtfparse
diff --git a/recipes/gtfsort/build.sh b/recipes/gtfsort/build.sh
new file mode 100644
index 0000000000000..8e10cdc3e3237
--- /dev/null
+++ b/recipes/gtfsort/build.sh
@@ -0,0 +1,9 @@
+#!/bin/bash
+
+# Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
+# We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
+export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="${BUILD_PREFIX}/.cargo"
+
+# build statically linked binary with Rust
+RUST_BACKTRACE=1
+cargo install --verbose --path . --root ${PREFIX}
diff --git a/recipes/gtfsort/meta.yaml b/recipes/gtfsort/meta.yaml
new file mode 100644
index 0000000000000..b04cc6fac6f30
--- /dev/null
+++ b/recipes/gtfsort/meta.yaml
@@ -0,0 +1,39 @@
+{% set name = "gtfsort" %}
+{% set version = "0.2.2" %}
+
+package:
+ name: {{ name }}
+ version: {{ version }}
+
+source:
+ url: https://github.com/alejandrogzi/{{ name }}/archive/refs/tags/v.{{ version }}.tar.gz
+ sha256: d22a8ef32e30111ad2dd08d1da0e0914ac62a728483b8e39a4ef8ea4e6133b4f
+
+build:
+ number: 0
+ run_exports:
+    - {{ pin_subpackage('gtfsort', max_pin="x.x") }}
+
+requirements:
+  build:
+    - {{ compiler("cxx") }}
+    - rust >=1.39
+    - pkg-config
+
+test:
+ commands:
+   - gtfsort --help
+   - gtfsort --version
+
+about:
+ home: https://github.com/alejandrogzi/gtfsort
+ license: MIT
+ license_family: MIT
+ license_file: LICENSE
+ summary: "A chr/pos/feature GTF sorter that uses a lexicographically-based index ordering algorithm."
+
+extra:
+  recipe-maintainers:
+    - alejandrogzi
+  identifiers:
+    - doi:10.1101/2023.10.21.563454
diff --git a/recipes/gtotree/meta.yaml b/recipes/gtotree/meta.yaml
index 385abd9f09751..6955b5089cf72 100644
--- a/recipes/gtotree/meta.yaml
+++ b/recipes/gtotree/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "GToTree" %}
-{% set version = "1.8.2" %}
+{% set version = "1.8.6" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,10 +7,12 @@ package:
 
 source:
   url: https://github.com/AstrobioMike/GToTree/archive/v{{ version }}.tar.gz
-  sha256: e8abe8ef1daa6683d7351f8dab5c3126786c5a6589a48e70aa3140af3a9d9013
+  sha256: 1712d9e18f128bbeeb585b1528a8e207c3a36cc7f1dbb7df66416ec0278d5a9a
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_compatible(name, max_pin='x') }}
 
 requirements:
   build:
diff --git a/recipes/gubbins/build.sh b/recipes/gubbins/build.sh
index 9c858565554b5..109fbbc99f4dd 100644
--- a/recipes/gubbins/build.sh
+++ b/recipes/gubbins/build.sh
@@ -3,9 +3,17 @@ export CFLAGS="-I$PREFIX/include"
 export LDFLAGS="-L$PREFIX/lib"
 export CPATH=${PREFIX}/include
 
+if [[ $target_platform == osx-* ]]; then
+    for toolname in "otool" "install_name_tool"; do
+        tool=$(find "${BUILD_PREFIX}/bin/" -name "*apple*-$toolname")
+        mv "${tool}" "${tool}.bak"
+        ln -s "/Library/Developer/CommandLineTools/usr/bin/${toolname}" "$tool"
+    done
+fi
+
 autoreconf -i
 ./configure --prefix=$PREFIX
 make
 make install
 cd python
-$PYTHON setup.py install --single-version-externally-managed --record=record.txt
+$PYTHON -m pip install . --report record.txt
diff --git a/recipes/gubbins/gubbins.patch b/recipes/gubbins/gubbins.patch
deleted file mode 100644
index 6fb38af8b036a..0000000000000
--- a/recipes/gubbins/gubbins.patch
+++ /dev/null
@@ -1,27 +0,0 @@
---- configure.ac	2017-04-18 16:38:19.000000000 +0300
-+++ configure.ac	2017-04-18 16:38:30.000000000 +0300
-@@ -24,9 +24,6 @@
- # Checks for pthread
- AX_PTHREAD
- 
--# Ensure zlib is available
--PKG_CHECK_MODULES([zlib], [zlib])
--AC_CHECK_HEADERS([zlib.h math.h])
- 
- # Check for Python
- AM_PATH_PYTHON([3.0],
-
---- python/Makefile.am	2017-09-22 12:57:33.000000000 +0200
-+++ python/Makefile.am	2017-10-27 22:46:48.000000000 +0200
-@@ -1,11 +1,9 @@
- EXTRA_DIST=gubbins/* setup.py scripts/*
-
- all-local:
--	${PYTHON} setup.py build
-
-
- install-exec-local:
--	${PYTHON} setup.py install
-
- uninstall-local:
- 	rm -rf $(pythondir)/*gubbins*
diff --git a/recipes/gubbins/meta.yaml b/recipes/gubbins/meta.yaml
index 5ac00a5ecb13a..2166a683609f3 100644
--- a/recipes/gubbins/meta.yaml
+++ b/recipes/gubbins/meta.yaml
@@ -1,20 +1,20 @@
 {% set name = "gubbins" %}
-{% set version = "3.3.0" %}
-{% set sha256 = "e0d1fee072d09d8ee5bdddecb17027fac4145043f35325ca12d961a7b1bc9fcb" %}
+{% set version = "3.3.5" %}
+{% set sha256 = "4ee363f82708bdda0c00d1c6c334cf20127bd852ee488619f61140771a279774" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 build:
-  number: 1
+  number: 0
   skip: True  # [py < 38]
+  run_exports:
+    - {{ pin_subpackage('gubbins', max_pin="x") }}
 
 source:
-  url: https://github.com/nickjcroucher/{{ name|lower }}/archive/v{{ version }}.tar.gz
+  url: https://github.com/nickjcroucher/gubbins/archive/refs/tags/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
-  patches:
-    - gubbins.patch
 
 requirements:
   build:
@@ -24,32 +24,41 @@ requirements:
     - autoconf
     - automake
     - autoconf-archive
+    - pkg-config
   host:
     - perl
     - zlib
-    - python
-    - scipy >=1.5.3
+    - python >=3.8,<3.10
+    - scipy
     - setuptools
-    - dendropy  >=4.0.2
-    - biopython >=1.59
+    - dendropy
+    - biopython
     - numpy <=1.23.0
-    - numba >=0.53
+    - numba
   run:
-    - python
-    - scipy >=1.5.3
-    - reportlab >=3.0
-    - dendropy  >=4.0.2
-    - biopython >=1.59
-    - multiprocess >=0.70
+    - python >=3.8,<3.10
+    - scipy
+    - dendropy
+    - biopython
+    - multiprocess
     - setuptools
     - raxml =8.2.12
     - iqtree >=2.2
     - rapidnj
     - raxml-ng =1.0.1
     - fasttree =2.1.10
-    - numpy >=1.2
-    - numba >=0.56
-    - ska2
+    - numpy <=1.23.0
+    - numba
+    - ska2 >=0.3.0
+    - r-argparser
+    - r-magrittr
+    - r-tidyverse
+    - bioconductor-treeio
+    - bioconductor-ggtree
+    - r-aplot
+    - r-patchwork
+    - r-cowplot
+    - r-rcolorbrewer
 
 test:
   commands:
diff --git a/recipes/guidemaker/meta.yaml b/recipes/guidemaker/meta.yaml
index c8e7d47600c19..0101eb6b5f4c8 100644
--- a/recipes/guidemaker/meta.yaml
+++ b/recipes/guidemaker/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.3.6" %}
+{% set version = "0.4.2" %}
 {% set name = "GuideMaker" %}
-{% set sha256 = "776996bfaf93aa853f79330fb1eaf5fee5f8bc7c51d9ca3bf5a22e6237cd73aa" %}
+{% set sha256 = "8766e3fa2443a09c270e06af5162e1d323b840b85789ba9b92efb4d51ed4b833" %}
 {% set user = "USDA-ARS-GBRU" %}
 
 package:
@@ -16,16 +16,18 @@ build:
   noarch: python
   entry_points:
     - guidemaker=guidemaker.cli:main
-  script: python -m pip install --no-deps --ignore-installed .
+  script: {{ PYTHON }} -m pip install --no-deps --ignore-installed . -vvv
+  run_exports:
+    - {{ pin_subpackage('guidemaker', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - python >=3.6
+    - python >=3.8,<3.12
     - biopython >=1.79
   run:
     - pip
-    - python >=3.6
+    - python >=3.8,<3.12
     - biopython >=1.79
     - numpy >=1.11
     - pybedtools >=0.8.2
@@ -40,17 +42,20 @@ requirements:
     - streamlit_tags >=1.2.6
     - pdoc3
     - onnxruntime >=1.8.1
+    - importlib-resources >=6.0
 
 test:
   commands:
     - guidemaker --version
 
 about:
-  home: https://github.com/USDA-ARS-GBRU/GuideMaker
+  home: https://guidemaker.app.scinet.usda.gov/
   license: 'CC0-1.0'
   license_family: 'PUBLIC-DOMAIN'
   license_file: LICENSE.txt
   summary: 'GuideMaker: Software to design gRNAs pools in non-model genomes and CRISPR-Cas systems'
+  doc_url: https://guidemaker.org/
+  dev_url: https://github.com/USDA-ARS-GBRU/GuideMaker
 
 extra:
   recipe-maintainers:
diff --git a/recipes/guidescan/meta.yaml b/recipes/guidescan/meta.yaml
index 354bce512d7db..9aea5a66ea70d 100644
--- a/recipes/guidescan/meta.yaml
+++ b/recipes/guidescan/meta.yaml
@@ -1,5 +1,5 @@
 {% set name="guidescan" %}
-{% set version="2.1.5" %}
+{% set version="2.2.0" %}
 
 package:
   name: {{ name }}
@@ -7,10 +7,12 @@ package:
 
 source:
   url: https://github.com/pritykinlab/guidescan-cli/releases/download/v{{ version }}/guidescan-v{{ version }}-src.tar.gz
-  sha256: be4feebbaa75a059a967ed210e614e1e23c8e65674c23a1b671ad23b76322042
+  sha256: b1fd82fc65bbcd883e6006ed921762e8075edd61b693f1a4d084e1fda6305f72
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   build:
diff --git a/recipes/gum/meta.yaml b/recipes/gum/meta.yaml
index 8f9399190655f..80d205fd59d79 100644
--- a/recipes/gum/meta.yaml
+++ b/recipes/gum/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "gum" %}
-{% set version = "1.1.1" %}
+{% set version = "2.0.2" %}
 
 package:
   name: {{ name|lower }}
@@ -7,27 +7,29 @@ package:
 
 source:
   - url: https://github.com/cartoonist/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
-    sha256: c60e7c1cc323ceb965222488b22875305daa5bdd3fe9d5f0cb3aa7ccb4520215
+    sha256: 3afd2bed67cdc053d5afacdb1b951a15dce36738874f92cc74a9fafbf7bb65c0
     patches:
       - 00-fix-ext-cmake.patch
-  - url: https://github.com/cartoonist/sdsl-lite/archive/d3562fdd873e3dd3a8b92d9a914ff5f723b30794.tar.gz
-    sha256: 6e2f9fe832faff39c8bd78edd3ee44f2c2b6b31ead385602b4a6c6aa0f82c9db
+  - url: https://github.com/cartoonist/sdsl-lite/archive/af1820fa3c25d2eb64bbab37a1a94938af862ec8.tar.gz
+    sha256: bac8afcf2f2fa2e25115b1dbdd1269c2ae114572dbd2b8bcff0efeb0f5859aa1
     folder: ext/sdsl-lite
-  - url: https://github.com/greg7mdp/parallel-hashmap/archive/25293cefd8b85491b45600c03fe8edf07647553f.tar.gz
-    sha256: 1162723b13814e4e4538b95af37f56f3c1b49fb03c6a5888127716f7bae33a42
+  - url: https://github.com/greg7mdp/parallel-hashmap/archive/d2bed96d2947c13b8fc90337198c315b2200e058.tar.gz
+    sha256: 387ce116c8568f2d2be43658024a233ed807f420cc9152b4723a780472b97c04
     folder: ext/parallel-hashmap
-  - url: https://github.com/cartoonist/gfakluge/archive/3389908112faa128c19b13208fb31969c3ff89a6.tar.gz
-    sha256: 66b1041a7f9dea6a4d8707a65c4aa63e7f1c717214e585b4770b2f14b28cc53b
+  - url: https://github.com/cartoonist/gfakluge/archive/9f635f2e49dc42443160d30368e07864ab221efd.tar.gz
+    sha256: 85504b0e9c0a0d68361d65984be9168f728eb0b3faad1ca42fc6e08156d57850
     folder: ext/gfakluge
-  - url: https://github.com/cartoonist/tinyFA/archive/819e2eef58a7ca70646e7d59b619d96fe5d3d252.tar.gz
-    sha256: 3918a0c502088c7b4b118fdfef5c8a410a4fd74e38a38793983d03526ad07328
+  - url: https://github.com/cartoonist/tinyFA/archive/bfe1eea6bc5dbd2c87b7b3d48d99e05dafce7073.tar.gz
+    sha256: 92d00462cd770c421a2d30f99aef0de997c732714defead8e05da390e3528755
     folder: ext/gfakluge/src/tinyFA
   - url: https://github.com/cartoonist/pliib/archive/26d27f87fa6781a2aeed2c7a99e41fcad5bd7c4c.tar.gz
     sha256: 6996ce5167345238c6a2929651531f5340f1275f95622a8bf7b2be1cb97a8125
     folder: ext/gfakluge/src/tinyFA/pliib
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/gunc/meta.yaml b/recipes/gunc/meta.yaml
index 81134c4d3bcb6..4bcb86e8d4d81 100644
--- a/recipes/gunc/meta.yaml
+++ b/recipes/gunc/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "gunc" %}
-{% set version = "1.0.5" %}
+{% set version = "1.0.6" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 2b60dc57aba4a990622389905b5a089dd708437d5310e67549ecc71906222dbe
+  sha256: 6c8d6ffc658d130e59b39709da521fc5689c85ad84f4ec6d381dda5efbb16475
 
 build:
   number: 0
@@ -15,11 +15,13 @@ build:
     - gunc = gunc.gunc:main
   script: "{{ PYTHON }} -m pip install . -vv --ignore-installed --no-deps"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage("gunc", max_pin="x.x") }}
 
 requirements:
   host:
     - pip
-    - python >=3.6
+    - python >=3.6,<3.12
   run:
     - prodigal
     - diamond 2.0.4
diff --git a/recipes/gw/build.sh b/recipes/gw/build.sh
index ad9024fc8c20e..d04ce0b29c4d9 100644
--- a/recipes/gw/build.sh
+++ b/recipes/gw/build.sh
@@ -1,5 +1,9 @@
 #!/usr/bin/bash
 set -e
+export USE_GL=1
+if [[ "$OSTYPE" != "darwin"* ]]; then
+  sed -i 's/-lEGL -lGLESv2/-lGL/' Makefile
+fi
 make prep
 CXXFLAGS="${CXXFLAGS} -D_LIBCPP_DISABLE_AVAILABILITY" make
 mkdir -p $PREFIX/bin
diff --git a/recipes/gw/meta.yaml b/recipes/gw/meta.yaml
index 784acc6f72728..5594f0a8c7aa8 100644
--- a/recipes/gw/meta.yaml
+++ b/recipes/gw/meta.yaml
@@ -1,6 +1,6 @@
 
-{% set version = "0.8.2" %}
-{% set sha256 = "519f06fac2635a59614517ff00dc1e86e4f78c2926df504b03ba62a66a5de3e8" %}
+{% set version = "0.9.3" %}
+{% set sha256 = "43445ef6d96bd8a09a9a45cd18e21481d7fefe7e9ab26aec4abd8d1f4bff3fcd" %}
 
 package:
   name: gw
@@ -13,7 +13,9 @@ source:
 
 
 build:
-  number: 0
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('gw', max_pin="x") }} 
 
 requirements:
   build:
@@ -32,14 +34,14 @@ requirements:
   host:
     - fontconfig
     - libcurl
-    - libdeflate
-    - htslib
-    - glfw
+    - libdeflate >=1.0
+    - htslib >=1.12
+    - glfw >=3.3
     - freetype
     - xorg-libxfixes  # [linux]
   run:
-    - glfw
-    - htslib
+    - glfw >=3.3
+    - htslib >=1.12 
 
 test:
   commands:
diff --git a/recipes/gxf2bed/build.sh b/recipes/gxf2bed/build.sh
new file mode 100644
index 0000000000000..8e10cdc3e3237
--- /dev/null
+++ b/recipes/gxf2bed/build.sh
@@ -0,0 +1,9 @@
+#!/bin/bash
+
+# Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
+# We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
+export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="${BUILD_PREFIX}/.cargo"
+
+# build statically linked binary with Rust
+RUST_BACKTRACE=1
+cargo install --verbose --path . --root ${PREFIX}
diff --git a/recipes/gxf2bed/meta.yaml b/recipes/gxf2bed/meta.yaml
new file mode 100644
index 0000000000000..a0b0d0160416c
--- /dev/null
+++ b/recipes/gxf2bed/meta.yaml
@@ -0,0 +1,37 @@
+{% set name = "gxf2bed" %}
+{% set version = "0.2.2" %}
+
+package:
+  name: gxf2bed
+  version: {{ version }}
+
+source:
+  url: https://github.com/alejandrogzi/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: ee500e08e8c94b2663ea511482d6520300cb81c9cbbb05a288563e4a808f5377
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('gxf2bed', max_pin="x.x") }}
+
+requirements:
+  build:
+    - {{ compiler("cxx") }}
+    - rust >=1.39
+    - pkg-config
+
+test:
+  commands:
+    - gxf2bed --help
+    - gxf2bed --version
+
+about:
+  home: https://github.com/alejandrogzi/gxf2bed
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "Fastest GTF/GFF-to-BED converter chilling around"
+
+extra:
+  recipe-maintainers:
+    - alejandrogzi
diff --git a/recipes/gxf2chrom/build.sh b/recipes/gxf2chrom/build.sh
new file mode 100644
index 0000000000000..8e10cdc3e3237
--- /dev/null
+++ b/recipes/gxf2chrom/build.sh
@@ -0,0 +1,9 @@
+#!/bin/bash
+
+# Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
+# We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
+export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="${BUILD_PREFIX}/.cargo"
+
+# build statically linked binary with Rust
+RUST_BACKTRACE=1
+cargo install --verbose --path . --root ${PREFIX}
diff --git a/recipes/gxf2chrom/meta.yaml b/recipes/gxf2chrom/meta.yaml
new file mode 100644
index 0000000000000..d3925fc4bf0dd
--- /dev/null
+++ b/recipes/gxf2chrom/meta.yaml
@@ -0,0 +1,37 @@
+{% set name = "gxf2chrom" %}
+{% set version = "0.1.0" %}
+
+package:
+  name: gxf2chrom
+  version: {{ version }}
+
+source:
+  url: https://github.com/alejandrogzi/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 453df8aaff017f2ddb0c977de2e5f494feba8fa17d8f8fcddc908642ecb5fb08
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('gxf2chrom', max_pin="x.x") }}
+
+requirements:
+  build:
+    - {{ compiler("cxx") }}
+    - rust >=1.39
+    - pkg-config
+
+test:
+  commands:
+    - gxf2chrom --help
+    - gxf2chrom --version
+
+about:
+  home: https://github.com/alejandrogzi/gxf2chrom
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "Everything in .chrom from GTF/GFF"
+
+extra:
+  recipe-maintainers:
+    - alejandrogzi
diff --git a/recipes/haddock_biobb/build.sh b/recipes/haddock_biobb/build.sh
new file mode 100644
index 0000000000000..dc60e539c255e
--- /dev/null
+++ b/recipes/haddock_biobb/build.sh
@@ -0,0 +1,24 @@
+#!/usr/bin/env bash
+
+# Compile FCC
+cd src/
+git clone https://github.com/haddocking/fcc.git
+cd fcc/src
+chmod u+x Makefile
+make \
+    CPP="${CXX}"
+cd $SRC_DIR
+
+# Compile fast-rmsdmatrix
+cd src/
+git clone https://github.com/mgiulini/fast-rmsdmatrix.git
+cd fast-rmsdmatrix/src
+chmod u+x Makefile
+make \
+    CC="${CC}"
+cd $SRC_DIR
+
+${PYTHON} setup.py install --single-version-externally-managed --record=record.txt
+
+mkdir -p $PREFIX/bin
+mkdir -p $SRC_DIR/bin
diff --git a/recipes/haddock_biobb/meta.yaml b/recipes/haddock_biobb/meta.yaml
new file mode 100644
index 0000000000000..ece2626c4853a
--- /dev/null
+++ b/recipes/haddock_biobb/meta.yaml
@@ -0,0 +1,70 @@
+{% set name = "haddock_biobb" %}
+{% set version = "3.0.6" %}
+
+package:
+  name: '{{ name|lower }}'
+  version: '{{ version }}'
+
+source:
+  url: https://github.com/haddocking/haddock3/archive/refs/tags/v3.0.0-beta.5.tar.gz
+  sha256: e0651a4913fb659a57e897ac68c4f8e8f29b61e00abfcab3f3bbd623e1977f7b
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - make
+    - binutils
+    - pip
+    - python
+    - git
+    - setuptools
+
+  host:
+    - python
+    - setuptools
+    - pip
+    - git
+  run:
+    - python 3.8.*  # [py38]
+    - python 3.9.*  # [py39]
+    - python 3.10.*  # [py310]
+    - pip
+    - git
+    - biopython
+    - jsonpickle
+    - numpy
+    - pyyaml
+    - scipy
+    - toml
+    - tox
+    - pandas
+    - plotly
+    - kaleido-core
+    - freesasa
+    - pdb-tools
+
+test:
+  commands:
+    - echo "DONE!"
+
+about:
+  home: https://github.com/haddocking/haddock3
+  license: Apache Software License
+  license_family: APACHE
+  summary: HADDOCK3 is the next generation integrative modelling software in the long-lasting HADDOCK project.
+  description: "HADDOCK3 is the next generation integrative modelling software in the long-lasting HADDOCK project. It represents a complete rethinking and rewriting of the HADDOCK2.X series, implementing a new way to interact with HADDOCK and offering new features to users who can now define custom workflows."
+
+extra:
+  skip: true  # [py2k or py3k]
+  # Define build matrix for multiple Python versions
+  build:
+    python:
+      - 3.8
+      - 3.9
+      - 3.10
\ No newline at end of file
diff --git a/recipes/haddock_biobb/post-link.sh b/recipes/haddock_biobb/post-link.sh
new file mode 100644
index 0000000000000..616a2388237eb
--- /dev/null
+++ b/recipes/haddock_biobb/post-link.sh
@@ -0,0 +1,2 @@
+echo "Before using HADDOCK please install CNS. Instructions: https://github.com/haddocking/haddock3/blob/main/docs/CNS.md" > "${PREFIX}"/.messages.txt
+echo "And create a softlink [ln -s] of the CNS executable to the ${PREFIX}lib/pythonX.XX/bin/ folder (Replace the X by your env python version)" >> "${PREFIX}"/.messages.txt
diff --git a/recipes/hafez/meta.yaml b/recipes/hafez/meta.yaml
index 18340ae7da713..a598e177d9895 100644
--- a/recipes/hafez/meta.yaml
+++ b/recipes/hafez/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "hafeZ" %}
-{% set version = "1.0.3" %}
+{% set version = "1.0.4" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://github.com/Chrisjrt/hafeZ/releases/download/{{ version }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 91572193361cf20f1dc228f16b1ab0ff70d7501b7e863e06c884a6b78d42191b
+  sha256: 8be39ddb827be742c824a95fb00cb86448d6d09b9a2996c0a76ca725e8eff1a6
 
 build:
   number: 0
   noarch: python
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('hafez', max_pin="x") }}
 
 requirements:
   host:
@@ -31,6 +33,7 @@ requirements:
     - pandas >=1.2.4
     - pysam >=0.16.0.1
     - pyrodigal >=0.4.7
+    - python
     - samtools >=1.11
     - sambamba >=0.6.8
     - scipy >=1.6.2
@@ -44,8 +47,8 @@ test:
 
 about:
   home: "https://github.com/Chrisjrt/hafeZ"
-  license: GPL-3
-  license_family: GPL-3
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
   summary: "A tool for identifying active prophage elements through read mapping"
   doc_url: "https://github.com/Chrisjrt/hafeZ/blob/master/README.md"
diff --git a/recipes/hairsplitter/build.sh b/recipes/hairsplitter/build.sh
new file mode 100644
index 0000000000000..978ddf0265bd8
--- /dev/null
+++ b/recipes/hairsplitter/build.sh
@@ -0,0 +1,29 @@
+mkdir -p $PREFIX/bin
+
+mkdir src/build
+cd src/build/
+cmake ..
+make
+
+cp ../../hairsplitter.py $PREFIX/bin
+chmod +x $PREFIX/bin/hairsplitter.py
+cp -r ./HS_call_variants $PREFIX/bin
+cp -r ./HS_create_new_contigs $PREFIX/bin
+cp -r ./HS_fa2gfa $PREFIX/bin
+cp -r ./HS_gfa2fa $PREFIX/bin
+cp -r ./HS_separate_reads $PREFIX/bin
+cp -r ./HS_GenomeTailor/HS_GenomeTailor $PREFIX/bin
+cp -r ../cut_gfa.py $PREFIX/bin
+chmod +x $PREFIX/bin/cut_gfa.py
+
+cp -r ../GraphUnzip/graphunzip.py $PREFIX/bin
+chmod +x $PREFIX/bin/graphunzip.py
+cp -r ../GraphUnzip/segment.py $PREFIX/bin
+cp -r ../GraphUnzip/finish_untangling.py $PREFIX/bin
+cp -r ../GraphUnzip/simple_unzip.py $PREFIX/bin
+cp -r ../GraphUnzip/repolish.py $PREFIX/bin
+cp -r ../GraphUnzip/transform_gfa.py $PREFIX/bin
+cp -r ../GraphUnzip/input_output.py $PREFIX/bin
+cp -r ../GraphUnzip/determine_multiplicity.py $PREFIX/bin
+chmod +x $PREFIX/bin/determine_multiplicity.py
+
diff --git a/recipes/hairsplitter/conda_build_config.yaml b/recipes/hairsplitter/conda_build_config.yaml
new file mode 100644
index 0000000000000..f08c687e0ef69
--- /dev/null
+++ b/recipes/hairsplitter/conda_build_config.yaml
@@ -0,0 +1,7 @@
+c_compiler_version:
+  - 11.2.0 # [linux]
+  - 11.1.0 # [osx]
+
+cxx_compiler_version:
+  - 11.2.0 # [linux]
+  - 11.1.0 # [osx]
diff --git a/recipes/hairsplitter/meta.yaml b/recipes/hairsplitter/meta.yaml
new file mode 100644
index 0000000000000..e8a86de57ea0b
--- /dev/null
+++ b/recipes/hairsplitter/meta.yaml
@@ -0,0 +1,49 @@
+{% set name = "HairSplitter" %}
+{% set version = "1.8.0" %}
+{% set sha256 = "a4b22e3d50860a51d657ccc233a034f38f143b74eeb9cafc6c3ca0b19b628207" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/RolandFaure/HairSplitter/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number : 0
+  run_exports:
+    - {{ pin_subpackage("hairsplitter", max_pin="x.x") }}
+
+requirements:
+  build:
+    - cmake
+    - make
+    - openmp
+    - {{ compiler('cxx') }}
+  run:
+    - python
+    - scipy
+    - numpy
+    - minimap2
+    - minigraph >=0.20
+    - racon
+    - samtools >=1.16
+    - openmp
+    - raven-assembler
+
+test:
+  commands:
+    - hairsplitter.py --help
+    
+extra:
+  recipe-maintainers:
+    - rolandfaure
+
+about:
+  home: https://github.com/RolandFaure/HairSplitter
+  license: GPL-3.0-or-later
+  license_file: LICENSE
+  summary: "Recovers collapsed haplotypes from a draft assembly and long reads"
+  maintainer : RolandFaure # Optional
+
diff --git a/recipes/hamronization/meta.yaml b/recipes/hamronization/meta.yaml
index 787c47c3d54cc..95cc66558b7cf 100644
--- a/recipes/hamronization/meta.yaml
+++ b/recipes/hamronization/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "hAMRonization" %}
-{% set version = "1.1.1" %}
+{% set version = "1.1.4" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,23 +7,25 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: c2eedf2e7fba995b8eb22fad77e486212882a676a4ad274b304a6cee0bfacc2d
+  sha256: 2f70bdf9ea2bd1faee59c99979cf14928bfb18015e9237a9790fe72fe3bf8544
 
 build:
   noarch: python
   number: 0
   entry_points:
     - hamronize = hAMRonization.hamronize:main
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('hamronization', max_pin="x") }}
 
 requirements:
   host:
     - pandas
     - pip
-    - python>=3.7
+    - python >=3.7
   run:
     - pandas
-    - python>=3.7
+    - python >=3.7
 
 test:
   imports:
@@ -35,6 +37,7 @@ about:
   home: "https://github.com/pha4ge/hAMRonization"
   license: "GNU Lesser General Public v3 (LGPLv3)"
   license_family: LGPL
+  license_file: LICENSE.txt
   summary: "Tool to convert and summarize AMR gene detection outputs using the hAMRonization specification"
   doc_url: "https://github.com/pha4ge/hAMRonization/blob/master/README.md"
   dev_url: "https://github.com/pha4ge/hAMRonization"
diff --git a/recipes/handyreadgenotyper/meta.yaml b/recipes/handyreadgenotyper/meta.yaml
new file mode 100644
index 0000000000000..799d14669030e
--- /dev/null
+++ b/recipes/handyreadgenotyper/meta.yaml
@@ -0,0 +1,52 @@
+{% set name = "HandyReadGenotyper" %}
+{% set version = "0.1.13" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/AntonS-bio/HandyReadGenotyper/archive/{{ version }}.tar.gz
+  sha256: 2f12cac57d07248d1695cac783b4ab1027a2d902f85d676ff074565f465ce839
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  run_exports:
+      - {{ pin_subpackage('handyreadgenotyper', max_pin="x.x") }}  
+  number: 0
+
+requirements:
+  host:
+    - pip
+    - python >=3.8,<3.9.0a0
+  run:
+    - python >=3.8,<3.9.0a0
+    - pandas >=2.0.0
+    - scikit-learn >=1.3.*
+    - pysam >=0.22.0
+    - numpy >=1.20.*
+    - tqdm >=4.66.*
+    - biopython >=1.78
+    - minimap2
+    - samtools
+
+test:
+  commands:
+    - train -h
+  requires:
+    - pip
+
+about:
+  license: GPL-3.0
+  license_file: LICENSE
+  home: https://github.com/AntonS-bio/HandyReadGenotyper
+  summary: 'Tool for training model and classifying reads from environmental ONT amplicon sequencing.'
+  description: |
+    Tool for training model and classifying reads from environmental ONT amplicon sequencing. 
+  doc_source_url: https://github.com/AntonS-bio/HandyAmpliconTool/blob/main/README.md
+
+
+extra:
+  recipe-maintainers:
+    - AntonS-bio
diff --git a/recipes/handyreadgenotyper/setup.py b/recipes/handyreadgenotyper/setup.py
new file mode 100644
index 0000000000000..25c9cabb5ea92
--- /dev/null
+++ b/recipes/handyreadgenotyper/setup.py
@@ -0,0 +1,54 @@
+#!/usr/bin/env python3
+from setuptools import setup
+from setuptools.command.install import install
+import os
+import sys
+
+__version__ = '0.1.9'
+
+def readme():
+    with open('README.md') as f:
+        return f.read()
+
+def check_dir_write_permission(directory):
+    if os.path.isdir(directory) and not os.access(directory, os.W_OK):
+        sys.exit('Error: no write permission for ' + directory + '  ' +
+                 'Perhaps you need to use sudo?')
+
+class HandyReadGenotyperInstall(install):
+
+    def run(self):
+        check_dir_write_permission(self.install_lib)
+        install.run(self)
+
+
+
+setup(name='HandyReadGenotyper',
+      version=__version__,
+      description='HandyReadGenotyper',
+      long_description=readme(),
+      python_requires='>=3.8,<3.9.0a0',
+      classifiers=['Development Status :: Beta',
+                   'License :: OSI Approved :: GNU General Public License v3 (GPLv3)',
+                   'Programming Language :: Python :: 3',
+                   'Topic :: Scientific/Engineering :: Bio-Informatics',
+                   'Intended Audience :: Science/Research'],
+      keywords='PCR amplicon primers',
+      url='https://github.com/AntonS-bio/HandyReadGenotyper.git',
+      author='Anton Spadar',
+      author_email='',
+      packages=['scripts'],
+      include_package_data=True,
+      entry_points={'console_scripts': ['classify = classify:main', 'train = train:main']},
+      scripts=[
+          'scripts/classify.py',
+          'scripts/data_classes.py',
+          'scripts/genotyper_data_classes.py',
+          'scripts/input_processing.py',
+          'scripts/inputs_validation.py',
+          'scripts/model_manager.py',
+          'scripts/read_classifier.py',
+          'scripts/train.py'
+      ],
+      cmdclass={'install': HandyReadGenotyperInstall}
+)
diff --git a/recipes/hapcut2/meta.yaml b/recipes/hapcut2/meta.yaml
index 471c87eb7587e..e27214ae0c444 100644
--- a/recipes/hapcut2/meta.yaml
+++ b/recipes/hapcut2/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "HapCUT2" %}
-{% set version = "1.3.3" %}
+{% set version = "1.3.4" %}
 
 package:
   name: {{ name|lower }}
@@ -7,10 +7,12 @@ package:
 
 source:
   - url: https://github.com/vibansal/{{ name }}/archive/v{{ version }}.tar.gz
-    sha256: 95b832e667638aff1de51721e54c906dfe8b46793b1ca8ecf1b6790d4f84aade
+    sha256: 33d0a047c4d9b7ef4287be979cc580183acbd09a3ab518b9f5ebc5f41c2bf34e
 
 build:
-  number: 5
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('hapcut2', max_pin="x") }}
 
 requirements:
   build:
@@ -37,4 +39,6 @@ about:
   summary: Tools for haplotype assembly from sequence data
   home: https://github.com/vibansal/HapCUT2/
   license: BSD-2-Clause
+  license_family: BSD
   license_file: LICENSE
+  dev_url: https://github.com/vibansal/HapCUT2/
diff --git a/recipes/haplink/build.sh b/recipes/haplink/build.sh
new file mode 100644
index 0000000000000..43e5d76bff51e
--- /dev/null
+++ b/recipes/haplink/build.sh
@@ -0,0 +1,55 @@
+#!/bin/bash
+
+set -euxo pipefail
+
+# Avoid libgit2 issues as much as humanly possible
+export JULIA_PKG_USE_CLI_GIT=true
+
+# Start a fake Julia depot
+FAKEDEPOT="${PREFIX}/share/haplink/fake_depot"
+export JULIA_DEPOT_PATH="${FAKEDEPOT}"
+
+# Turn off automatic precompilation
+export JULIA_PKG_PRECOMPILE_AUTO=0
+
+# Copy the required files to a shared directory
+HAPLINK_SRC_DIR=${PREFIX}/share/haplink/src
+mkdir -p "${HAPLINK_SRC_DIR}"
+cp -r {src,deps,example,Project.toml,Comonicon.toml} "${HAPLINK_SRC_DIR}"
+
+# Work from the shared source directory
+cd "${HAPLINK_SRC_DIR}" || exit 1
+
+# Run the Comonicon install method
+julia \
+    --startup-file=no \
+    --history-file=no \
+    -e 'using Pkg; Pkg.develop(;path=pwd())'
+julia \
+    --startup-file=no \
+    --history-file=no \
+    "deps/build.jl"
+
+# Create a permanent depot
+HAPLINK_DEPOT="${PREFIX}/share/haplink/depot"
+mkdir -p "${HAPLINK_DEPOT}"
+
+# Copy the useful directories over to the permanent depot
+for SUBDIR in "packages" "artifacts" "environments" "scratchspaces"; do
+    mv "${FAKEDEPOT}/${SUBDIR}" "${HAPLINK_DEPOT}/${SUBDIR}"
+done
+
+# Copy the script to someplace more permanent
+mkdir -p "${PREFIX}/bin"
+mv "${JULIA_DEPOT_PATH}/bin/haplink" "${PREFIX}/bin"
+sed -i -E 's%JULIA_PROJECT=.+%JULIA_PROJECT=\${CONDA_PREFIX}/share/haplink/depot/scratchspaces/8ca39d33-de0d-4205-9b21-13a80f2b7eed/env%' "${PREFIX}/bin/haplink"
+sed -i -E 's%exec .+%exec ${CONDA_PREFIX}/bin/julia \\%' "${PREFIX}/bin/haplink"
+
+# Destroy the fake depot
+rm -rf "${FAKEDEPOT}"
+
+# Add activation scripts
+for CHANGE in "activate" "deactivate"; do
+    mkdir -p "${PREFIX}/etc/conda/${CHANGE}.d"
+    cp "${RECIPE_DIR}/scripts/${CHANGE}.sh" "${PREFIX}/etc/conda/${CHANGE}.d/${PKG_NAME}_${CHANGE}.sh"
+done
diff --git a/recipes/haplink/meta.yaml b/recipes/haplink/meta.yaml
new file mode 100644
index 0000000000000..2c68e6831f118
--- /dev/null
+++ b/recipes/haplink/meta.yaml
@@ -0,0 +1,45 @@
+{% set name = "haplink" %}
+{% set version = "1.1.0" %}
+{% set sha256 = "6a4dc2c4a6ef4b2eb2db32576755c8efabe8601ea3ac48455f162f97750cd469" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('haplink', max_pin='x') }}
+  binary_relocation: false
+  skip: True # [osx]
+
+source:
+  url: https://github.com/ksumngs/HapLink.jl/archive/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+# HapLink only requires Julia v1.6 to run natively, but the changes made to how
+# conda changes JULIA_DEPOT_PATH makes the conda version require Julia v1.8 or
+# greater
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - git
+    - julia >=1.8
+  host:
+    - julia >=1.8
+  run:
+    - julia >=1.8
+
+test:
+  commands:
+    - haplink --help
+
+about:
+  home: https://ksumngs.github.io/HapLink.jl
+  license: MIT
+  license_file: LICENSE
+  summary: Viral haplotype calling via linkage disequilibrium
+
+extra:
+  container:
+    extended-base: True
diff --git a/recipes/haplink/scripts/activate.sh b/recipes/haplink/scripts/activate.sh
new file mode 100644
index 0000000000000..e7f8a8d77bff4
--- /dev/null
+++ b/recipes/haplink/scripts/activate.sh
@@ -0,0 +1,3 @@
+#!/bin/sh
+export HAPLINK_JULIA_DEPOT_PATH_BACKUP="${JULIA_DEPOT_PATH:-}"
+export JULIA_DEPOT_PATH="${CONDA_PREFIX}/share/haplink/depot:${JULIA_DEPOT_PATH}"
diff --git a/recipes/haplink/scripts/deactivate.sh b/recipes/haplink/scripts/deactivate.sh
new file mode 100644
index 0000000000000..6377c2be2acb8
--- /dev/null
+++ b/recipes/haplink/scripts/deactivate.sh
@@ -0,0 +1,6 @@
+#!/bin/sh
+export JULIA_DEPOT_PATH="${JULIA_DEPOT_PATH_BACKUP}"
+unset HAPLINK_JULIA_DEPOT_PATH_BACKUP
+if [ -z "${JULIA_DEPOT_PATH}" ]; then
+  unset JULIA_DEPOT_PATH
+fi
diff --git a/recipes/haplotaglr/meta.yaml b/recipes/haplotaglr/meta.yaml
new file mode 100644
index 0000000000000..474b17810f67c
--- /dev/null
+++ b/recipes/haplotaglr/meta.yaml
@@ -0,0 +1,46 @@
+{% set name = "HaplotagLR" %}
+{% set version = "1.1.5" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: 5cbaa37b817a40f4b06ff3437f24e5364d516477df3abd550e3b00382be7b7f8
+
+build:
+  number: 0
+  entry_points:
+    - HaplotagLR = HaplotagLR.cli:main
+  script: "{{ PYTHON }} -m pip install . -vv"
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage('haplotaglr', max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.7,<3.13
+    - pip
+  run:
+    - python >=3.7,<3.13
+    - biopython >=1.78
+    - numpy >=1.20.1
+    - powerlaw >=1.4.6
+    - pyliftover >=0.4
+    - pysam >=0.16.0.1
+    - powerlaw >=1.4.6
+    - requests >=2.26.0
+
+test:
+  imports:
+    - HaplotagLR
+  commands:
+    - HaplotagLR --help
+
+about:
+  home: "https://github.com/Boyle-Lab/HaplotagLR.git"
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "Haplotagging individual long reads using known haplotype information."
diff --git a/recipes/hapog/meta.yaml b/recipes/hapog/meta.yaml
index 2851b58c4dbb3..295b5552dc1d6 100644
--- a/recipes/hapog/meta.yaml
+++ b/recipes/hapog/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.3.4" %}
+{% set version = "1.3.8" %}
 
 package:
   name: hapog
@@ -6,11 +6,13 @@ package:
 
 build:
   skip: True  # [py < 37]
-  number: 3
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("hapog", max_pin="x") }}
 
 source:
   url: https://github.com/institut-de-genomique/HAPO-G/archive/refs/tags/{{ version }}.tar.gz
-  sha256: "51acbd27ec6db328404256b9a0166a7f3911c572a3a53a818a83945a9c85623f"
+  sha256: "822f4c7e688ae2b3004ac444911b592beaa25db6800b766503c1d41f0290af4b"
 
 requirements:
   build:
@@ -20,11 +22,10 @@ requirements:
   host:
     - python
     - htslib
-    - setuptools
+    - zlib
   run:
     - htslib
     - python
-    - setuptools
     - biopython
     - bwa
     - samtools
@@ -43,6 +44,8 @@ about:
   license_family: OTHER
   license_file: LICENSE.md
   summary: Haplotype-Aware Polishing of Genomes
+  doc_url: https://www.genoscope.cns.fr/hapog/
+  dev_url: https://github.com/institut-de-genomique/HAPO-G
 
 extra:
   identifiers:
diff --git a/recipes/happy-python/LICENSE b/recipes/happy-python/LICENSE
new file mode 100644
index 0000000000000..936d55bee8caa
--- /dev/null
+++ b/recipes/happy-python/LICENSE
@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2020 Antoine Houtain
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.
diff --git a/recipes/happy-python/meta.yaml b/recipes/happy-python/meta.yaml
new file mode 100644
index 0000000000000..d947e5236e529
--- /dev/null
+++ b/recipes/happy-python/meta.yaml
@@ -0,0 +1,51 @@
+{% set name = "happy-python" %}
+{% set version = "0.2.1rc0" %}
+{% set sha256 = "1b9935fc30bf8974b4814f8e1b4f22d7ddf4ff16a6c92cda0114d7fa8a501682" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/happy-AntoineHo/happy-AntoineHo-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  noarch: python
+  script: {{ PYTHON }} -m pip install . --no-deps -vvv
+  entry_points:
+    - happy=happy.Hap:main
+
+requirements:
+  host:
+    - python >=3.7
+    - pip
+  run:
+    - python >=3.7
+    - numpy
+    - scipy
+    - matplotlib-base
+    - pandas
+    - docopt
+    - sambamba
+    - minimap2
+    - samtools
+
+test:
+  imports:
+    - happy
+  commands:
+    - happy --help
+
+about:
+  home: https://github.com/AntoineHo/HapPy
+  summary: Haploidy and Size Completeness Estimation with Python
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  doc_url: https://pypi.org/project/happy-AntoineHo/
+
+extra:
+  identifiers:
+    - doi:10.1186/s12859-021-04118-3
diff --git a/recipes/haptools/meta.yaml b/recipes/haptools/meta.yaml
index 46631d9450c45..402565706e9c1 100644
--- a/recipes/haptools/meta.yaml
+++ b/recipes/haptools/meta.yaml
@@ -1,6 +1,5 @@
 {% set name = "haptools" %}
-{% set version = "0.2.1" %}
-
+{% set version = "0.4.0" %}
 
 package:
   name: {{ name|lower }}
@@ -8,7 +7,7 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/haptools-{{ version }}.tar.gz
-  sha256: 792825cd0c89a8b087d07347ec1e324873837aa5cfb9caaedfab4a676020ec92
+  sha256: 85dba0bde58e33ac71c298eb37e1272ca83276d06714d6516f8bc722c3455fe0
 
 build:
   number: 0
@@ -16,19 +15,22 @@ build:
   entry_points:
     - haptools = haptools.__main__:main
   script: {{ PYTHON }} -m pip install . -vv
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   host:
     - pip >=19.0.3
     - poetry-core >=1.0.0
-    - python >=3.7,<3.11
+    - python >=3.7,<4.0
   run:
     - click >=8.0.3
     - cyvcf2 >=0.30.14
     - matplotlib-base >=3.5.1
     - numpy >=1.20.0
+    - pgenlib >=0.90.1
     - pysam >=0.19.0
-    - python >=3.7,<3.11
+    - python >=3.7,<4.0
 
 test:
   imports:
@@ -44,8 +46,14 @@ about:
   home: https://github.com/cast-genomics/haptools
   summary: Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis
   license: MIT
+  license_family: MIT
   license_file: LICENSE
+  doc_url: https://haptools.readthedocs.io
+  dev_url: https://github.com/cast-genomics/haptools
 
 extra:
   recipe-maintainers:
     - aryarm
+  identifiers:
+    - doi:10.1093/bioinformatics/btad104
+    - biotools:haptools
diff --git a/recipes/harmony-pytorch/meta.yaml b/recipes/harmony-pytorch/meta.yaml
index e29cb986fdae9..ac40e479722ae 100644
--- a/recipes/harmony-pytorch/meta.yaml
+++ b/recipes/harmony-pytorch/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "harmony-pytorch" %}
-{% set version = "0.1.7" %}
+{% set version = "0.1.8" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: "90b6d6d7a9ae0a20584840828cff415d503be5449a7328b0c76fc45ed3f8c4df"
+  sha256: "1b097906d49c6ed9dde6cf234f7d987fb49a3b649b8a1323d99e6ea71b5b7df2"
 
 build:
-  number: 1
+  number: 0
   noarch: python
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('harmony-pytorch', max_pin="x.x") }}
 
 requirements:
   host:
@@ -35,7 +37,8 @@ test:
 
 about:
   home: "https://github.com/lilab-bcb/harmony-pytorch"
-  license: BSD
+  license: BSD-3-Clause
+  license_family: BSD
   license_file: LICENSE
   summary: "This is a Pytorch implementation of Harmony algorithm on single-cell sequencing data integration."
 
diff --git a/recipes/harmonypy/meta.yaml b/recipes/harmonypy/meta.yaml
index 80d20e410bbc0..fa2d43585bcc3 100644
--- a/recipes/harmonypy/meta.yaml
+++ b/recipes/harmonypy/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "harmonypy" %}
-{% set version = "0.0.6" %}
+{% set version = "0.0.9" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: "9ab84eb9ae8544ae5307b38a28f81ccbede6df6cacf270335394e99e06750227"
+  sha256: "85bfdd4e6ec6e0fa8816a276639358d3598a40d60ba9f7a5d9dada8706be8c4d"
 
 build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   host:
@@ -28,7 +30,6 @@ requirements:
 test:
   imports:
     - harmonypy
-    - harmonypy.tests
 
 about:
   home: "https://github.com/slowkow/harmonypy"
diff --git a/recipes/harpy/build.sh b/recipes/harpy/build.sh
index 7c18a783e8bf4..dacb8c084c852 100644
--- a/recipes/harpy/build.sh
+++ b/recipes/harpy/build.sh
@@ -1,17 +1,16 @@
-#!/bin/bash
+#!/usr/bin/env bash
 
 mkdir -p ${PREFIX}/bin
 
-cp misc/ema-h ${PREFIX}/bin
-
-# Harpy executable
-cp harpy ${PREFIX}/bin/
+# install harpy proper
+${PYTHON} -m pip install . --no-deps -vv
 
 # rules
-cp rules/*.smk ${PREFIX}/bin/
+cp workflow/rules/*.smk ${PREFIX}/bin/
 
 # associated scripts
-cp utilities/*.{py,R,pl} ${PREFIX}/bin/
+chmod +x workflow/scripts/*
+cp workflow/scripts/* ${PREFIX}/bin/
 
 # reports
-cp reports/*.Rmd ${PREFIX}/bin/
\ No newline at end of file
+cp workflow/report/*.Rmd ${PREFIX}/bin/
diff --git a/recipes/harpy/makefile.patch b/recipes/harpy/makefile.patch
deleted file mode 100644
index 7cdd4b4079130..0000000000000
--- a/recipes/harpy/makefile.patch
+++ /dev/null
@@ -1,25 +0,0 @@
-diff -u -ur ema/Makefile ema.patched/Makefile
---- ema/Makefile
-+++ ema.patched/Makefile
-@@ -38,7 +38,7 @@
- .PRECIOUS: $(TARGET) $(OBJECTS)
- 
- $(TARGET): $(OBJECTS) preproc bwa
--	$(CXX) $(LFLAGS) $(OBJECTS) $(LIBS) -o $@
-+	$(CXX) $(LDFLAGS) $(LFLAGS) $(OBJECTS) $(LIBS) -o $@
- 
- clean:
- 	-rm -f $(OBJDIR)/*.o
-diff -u -ur ema/bwa/Makefile ema.patched/bwa/Makefile
-index 5480536..59f3e9d 100644
---- ema/bwa/Makefile
-+++ ema.patched/bwa/Makefile
-@@ -3,7 +3,7 @@
- CFLAGS=		-g -Wall -Wno-unused-function -O2
- WRAP_MALLOC=-DUSE_MALLOC_WRAPPERS
- AR=			ar
--DFLAGS=		-DHAVE_PTHREAD $(WRAP_MALLOC)
-+DFLAGS=		-DHAVE_PTHREAD $(WRAP_MALLOC) $(LDFLAGS)
- LOBJS=		utils.o kthread.o kstring.o ksw.o bwt.o bntseq.o bwa.o bwamem.o bwamem_pair.o bwamem_extra.o malloc_wrap.o \
- 			QSufSort.o bwt_gen.o rope.o rle.o is.o bwtindex.o
- AOBJS=		bwashm.o bwase.o bwaseqio.o bwtgap.o bwtaln.o bamlite.o \
diff --git a/recipes/harpy/meta.yaml b/recipes/harpy/meta.yaml
index 7042e8e9016ec..1075fe061f052 100644
--- a/recipes/harpy/meta.yaml
+++ b/recipes/harpy/meta.yaml
@@ -1,67 +1,59 @@
-{% set version = "0.2.0" %}
-{% set sha256 = "8e0b06bb253daf722a21789463a55153625e6ecffdf7887ac3a0998e47c569fe" %}
+{% set version = "0.9.1" %}
+{% set sha256 = "3d05a4995f6c6c9059b5fba269ff6dee7f8befd1bdc7cb622c7f753dea49af79" %}
 
 package:
   name: harpy
   version: '{{ version }}'
 
 source:
-  url: https://github.com/pdimens/harpy/archive/{{ version }}.tar.gz
+  url: https://github.com/pdimens/harpy/releases/download/{{ version }}/harpy.{{ version }}.tar.gz
   sha256: '{{ sha256 }}'
 
 build:
   skip: True  # [osx]
   number: 0
+  missing_dso_whitelist:
+    - /lib64/libstdc++.so.6
+    - /lib64/libc.so.6
+  run_exports:
+    - {{ pin_subpackage('harpy', max_pin="x.x") }}
 
 requirements:
+  host:
+    - python =3.12
+    - pip
   run:
-    - bcftools
-    - bioconductor-complexheatmap
-    - bwa
-    - datamash
-    - fastp
-    - hapcut2
-    - libzlib
-    - leviathan
-    - llvm-openmp 
-    - multiqc
-    - naibr-plus
-    - python >=3.7
-    - r-base >=4
-    - r-circlize
-    - r-dplyr
-    - r-dt
-    - r-ggplot2
-    - r-knitr
-    - r-magrittr
-    - r-plotly
-    - r-rmarkdown
-    - r-stitch
-    - r-tidyr
-    - r-viridislite
+    - bcftools =1.19
+    - pandas
+    - python >3.10
     - rich-click
-    - snakemake >=7
-    - sambamba
+    - snakemake-minimal >7
     - samtools
-    - seqfu
+    - seqtk
     - tabix
-    - zlib
 
 test:
   commands:
     - "snakemake --version"
-    - "R --version"
     - "harpy --version"
+
 about:
   home: "https://github.com/pdimens/harpy/"
-  license: "The MIT License (MIT)"
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE
   summary: "Process raw haplotagging data, from raw sequences to phased haplotypes."
+  description: |
+    Harpy is a command-line tool to easily process haplotag or 10x linked-read data. It uses
+    Snakemake under the hood to execute different workflows (quality control, trimming, 
+    alignment, variant calling, phasing, etc.), but the user is rarely, if ever, exposed
+    to Snakemake directly. With an emphasis on user-friendliness, parallelization, transparency,
+    and reproducibility, Harpy aims to quickly handle data processing so that you can focus more
+    on analyzing your data. 
   doc_url: https://pdimens.github.io/harpy/
   dev_url: https://github.com/pdimens/harpy
 
 extra:
-  container:
-    extended-base: True
   recipe-maintainers:
     - pdimens
   skip-lints:
diff --git a/recipes/harpy/remove_native.patch b/recipes/harpy/remove_native.patch
deleted file mode 100644
index 7c7eed3144d6b..0000000000000
--- a/recipes/harpy/remove_native.patch
+++ /dev/null
@@ -1,19 +0,0 @@
-diff --git ema/Makefile ema.patched/Makefile
-index 15e57b0..c7fba73 100644
---- ema/Makefile
-+++ ema.patched/Makefile
-@@ -2,11 +2,11 @@ TARGET = ema
- LIBS = -L$(BWADIR) -lbwa -lm -lz -lpthread
- CC = gcc
- WARNINGS = -Wall -Wextra
--CFLAGS = -std=gnu99 -march=native -O3 -fopenmp -flto -fstrict-aliasing $(WARNINGS)
--LFLAGS = -lstdc++ -march=native -O3 -flto -fopenmp -lpthread
-+CFLAGS = -std=gnu99 -march=x86-64 -O3 -fopenmp -flto -fstrict-aliasing $(WARNINGS)
-+LFLAGS = -lstdc++ -march=x86-64 -O3 -flto -fopenmp -lpthread
- 
- CXX = g++
--CPPFLAGS = -c -std=c++11 -O3 -march=native -pthread
-+CPPFLAGS = -c -std=c++11 -O3 -march=x86-64 -pthread
- LDFLAGS = -pthread
- 
- #CFLAGS = -std=gnu99 -fstrict-aliasing -fopenmp -ggdb -O0 $(WARNINGS)
diff --git a/recipes/hatchet/build.sh b/recipes/hatchet/build.sh
index c44c6715da79a..dce0f2fc3250e 100755
--- a/recipes/hatchet/build.sh
+++ b/recipes/hatchet/build.sh
@@ -1,3 +1,5 @@
+#!/bin/bash
+
 # Compile Gurobi
 
 if [[ "$OSTYPE" == "darwin"* ]]; then
@@ -18,6 +20,5 @@ else
     cp $GUROBI_HOME/linux64/lib/libgurobi90.so $PREFIX/lib
 fi
 
-export CXXFLAGS=-pthread
-$PYTHON setup.py install --single-version-externally-managed --record=record.txt
-
+export CXXFLAGS="-O3 -pthread -I${PREFIX}/include ${LDFLAGS}"
+$PYTHON -m pip install . --no-build-isolation --no-deps -vvv
diff --git a/recipes/hatchet/meta.yaml b/recipes/hatchet/meta.yaml
index 42ac3f6a77603..595507d10c9e0 100755
--- a/recipes/hatchet/meta.yaml
+++ b/recipes/hatchet/meta.yaml
@@ -1,13 +1,13 @@
 {% set name = "hatchet" %}
-{% set version = "1.1.1" %}
+{% set version = "2.0.1" %}
 
 package:
   name: '{{ name|lower }}'
   version: '{{ version }}'
 
 source:
-  - url: https://github.com/raphael-group/{{ name }}/archive/v{{ version }}.zip
-    sha256: db30183ffb2bbdfff4753e8ef1c58f7d93b59c65b5737f92b3ac1c5f2f3936a4
+  - url: https://github.com/raphael-group/{{ name }}/archive/v{{ version }}.tar.gz
+    sha256: e8ca462fc4404bacc97b2195e734cd6086eebd40e7941d450c069967d294d988
 
   - url: https://packages.gurobi.com/9.0/gurobi9.0.2_linux64.tar.gz  # [not osx]
     sha256: 6527581aef11c3e425c52993d108861ef53ec13971d9931861bf9c88d9d111f3  # [not osx]
@@ -17,44 +17,51 @@ source:
     sha256: 1d58586f9a33ac7035f51f6a04707248218f70bddbec78cb83f11c986ac652cd  # [osx]
 
 build:
-  number: 1
+  number: 0
   skip: True  # [py < 37]
+  entry_points:
+    - hatchet = hatchet.__main__:main
+  run_exports:
+    - {{ pin_subpackage('hatchet', max_pin="x") }}
 
 requirements:
-  build:  
+  build:
     - {{ compiler('cxx') }}
-    - cmake>=3.9
+    - cmake >=3.9
     - make
   host:
     - python
-    - setuptools
+    - pip
   run:
     - python
-    - bcftools>=1.9
+    - bcftools >=1.9
     - biopython
     - hmmlearn
     - matplotlib-base
     - mosdepth
     - pandas
-    - picard
+    - picard-slim
     - psutil
     - pyomo
     - pysam
     - requests
-    - samtools>=1.9
-    - seaborn 
+    - samtools >=1.9
+    - seaborn
     - scikit-learn
-    - scipy 
+    - scipy
     - tabix
 
 test:
   imports:
-    - hatchet 
+    - hatchet
 
 about:
   home: https://github.com/raphael-group/hatchet
-  license: BSD-3
-  summary: "Holistic Allele-specific Tumor Copy-number Heterogeneity"
+  license: BSD-3-Clause
+  license_family: BSD
+  license_file: LICENSE
+  summary: "A package to infer allele and clone-specific copy-number aberrations (CNAs)."
+  doc_url: https://raphael-group.github.io/hatchet/
   description: |
     HATCHet is an algorithm to infer allele and clone-specific copy-number
     aberrations (CNAs), clone proportions, and whole-genome duplications
diff --git a/recipes/hecatomb/meta.yaml b/recipes/hecatomb/meta.yaml
index 52fb463a7f9b2..3aa74512cf22e 100644
--- a/recipes/hecatomb/meta.yaml
+++ b/recipes/hecatomb/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "Hecatomb" %}
-{% set version = "1.2.0" %}
+{% set version = "1.3.2" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,11 +7,13 @@ package:
 
 source:
   url: "https://github.com/shandley/{{ name|lower }}/archive/refs/tags/v{{ version }}.tar.gz"
-  sha256: 20da6871131a01222d4374194188f766bfdd3ab164ab4dbdd4307db0b80341a7
+  sha256: d1699d80bef234c6815333d468721a6c57c24697a26d6e26ab9e0a3167373ff8
 
 build:
   number: 0
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('hecatomb', max_pin='x.x') }}
   script: "{{ PYTHON }} -m pip install . -vv "
 
 requirements:
@@ -19,12 +21,13 @@ requirements:
     - python
     - pip
   run:
-    - python >=3.8,<3.11
-    - snakemake >=7.14.0
+    - python >=3.9,<=3.12
+    - snakemake >=7.14.0,<8
+    - pulp <2.8
     - pyyaml >=6.0
     - click >=8.1.3
-    - jinja2 >=3.0.2
-    - mamba >=0.15.3
+    - metasnek >=0.0.7
+    - snaketool-utils >=0.0.4
 
 test:
   commands:
diff --git a/recipes/helitronscanner/HelitronScanner.sh b/recipes/helitronscanner/HelitronScanner.sh
new file mode 100644
index 0000000000000..1e028d8f50b7e
--- /dev/null
+++ b/recipes/helitronscanner/HelitronScanner.sh
@@ -0,0 +1,64 @@
+#!/bin/bash
+# HelitronScanner executable shell script, adapted from bazam shell script
+jar_name="HelitronScanner.jar"
+
+set -eu -o pipefail
+
+set -o pipefail
+export LC_ALL=en_US.UTF-8
+
+# Find original directory of bash script, resolving symlinks
+# http://stackoverflow.com/questions/59895/can-a-bash-script-tell-what-directory-its-stored-in/246128#246128
+SOURCE="${BASH_SOURCE[0]}"
+while [ -h "$SOURCE" ]; do # resolve $SOURCE until the file is no longer a symlink
+    DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
+    SOURCE="$(readlink "$SOURCE")"
+    [[ $SOURCE != /* ]] && SOURCE="$DIR/$SOURCE" # if $SOURCE was a relative symlink, we need to resolve it relative to the path where the symlink file was located
+done
+DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
+
+JAR_DIR=$DIR
+
+java=java
+
+if [ -n "${JAVA_HOME:=}" ]; then
+  if [ -e "$JAVA_HOME/bin/java" ]; then
+      java="$JAVA_HOME/bin/java"
+  fi
+fi
+
+# extract memory and system property Java arguments from the list of provided arguments
+# http://java.dzone.com/articles/better-java-shell-script
+default_jvm_mem_opts="-Xms512m -Xmx1g"
+jvm_mem_opts=""
+jvm_prop_opts=""
+pass_args=""
+for arg in "$@"; do
+    case $arg in
+        '-D'*)
+            jvm_prop_opts="$jvm_prop_opts $arg"
+            ;;
+        '-XX'*)
+            jvm_prop_opts="$jvm_prop_opts $arg"
+            ;;
+         '-Xm'*)
+            jvm_mem_opts="$jvm_mem_opts $arg"
+            ;;
+         *)
+            pass_args="$pass_args $arg"
+            ;;
+    esac
+done
+
+if [ "$jvm_mem_opts" == "" ]; then
+    jvm_mem_opts="$default_jvm_mem_opts"
+fi
+
+pass_arr=($pass_args)
+if [[ ${pass_arr[0]:=} == org* ]]
+then
+    eval "$java" $jvm_mem_opts $jvm_prop_opts -cp "$JAR_DIR/$jar_name" $pass_args
+else
+    eval "$java" $jvm_mem_opts $jvm_prop_opts -jar "$JAR_DIR/$jar_name" $pass_args
+fi
+exit
diff --git a/recipes/helitronscanner/build.sh b/recipes/helitronscanner/build.sh
new file mode 100644
index 0000000000000..ba789741a2457
--- /dev/null
+++ b/recipes/helitronscanner/build.sh
@@ -0,0 +1,28 @@
+#!/bin/sh
+set -x -e
+
+HELITRONSCANNER_DIR=${PREFIX}/share/HelitronScanner
+HELITRONSCANNER_TRAININGSET_PATH=${HELITRONSCANNER_DIR}/TrainingSet
+
+mkdir -p ${PREFIX}/bin
+mkdir -p ${HELITRONSCANNER_DIR}
+mkdir -p ${HELITRONSCANNER_TRAININGSET_PATH}
+
+cp -r HelitronScanner/* ${HELITRONSCANNER_DIR}
+cp -r TrainingSet/* ${HELITRONSCANNER_TRAININGSET_PATH}
+
+cp ${RECIPE_DIR}/HelitronScanner.sh ${HELITRONSCANNER_DIR}/HelitronScanner
+chmod +x ${HELITRONSCANNER_DIR}/HelitronScanner
+ln -s ${HELITRONSCANNER_DIR}/HelitronScanner ${PREFIX}/bin
+
+## Set HelitronScanner variables on env activation for training set access
+mkdir -p ${PREFIX}/etc/conda/activate.d ${PREFIX}/etc/conda/deactivate.d
+cat <<EOF >> ${PREFIX}/etc/conda/activate.d/helitronscanner.sh
+export HELITRONSCANNER_PATH=${HELITRONSCANNER_DIR}
+export HELITRONSCANNER_TRAININGSET_PATH=${HELITRONSCANNER_TRAININGSET_PATH}
+EOF
+
+cat <<EOF >> ${PREFIX}/etc/conda/deactivate.d/helitronscanner.sh
+unset HELITRONSCANNER_PATH
+unset HELITRONSCANNER_TRAININGSET_PATH
+EOF
diff --git a/recipes/helitronscanner/meta.yaml b/recipes/helitronscanner/meta.yaml
new file mode 100644
index 0000000000000..015f10c62f4d1
--- /dev/null
+++ b/recipes/helitronscanner/meta.yaml
@@ -0,0 +1,31 @@
+{% set name = "HelitronScanner" %}
+{% set version = "1.0" %}
+{% set sha256 = "936accf4a129bc36b38d10472a5b7295dd00f68cc275952e50fff9d9fa685815" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://sourceforge.net/projects/HelitronScanner/files/HelitronScanner_V{{ version }}.zip
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage('helitronscanner', max_pin='x') }}
+
+requirements:
+  run:
+    - openjdk
+
+test:
+  commands:
+    - HelitronScanner scanHead -Xmx2g --help | grep 'Scan for Helitron 5'
+    - cat "${HELITRONSCANNER_TRAININGSET_PATH}/head.lcvs" | grep 'TCCATAATA'
+
+about:
+  home: 'https://sourceforge.net/projects/helitronscanner'
+  license: GPL-3.0-or-later
+  summary: HelitronScanner uncovers a large overlooked cache of Helitron transposons in many genomes
diff --git a/recipes/hhsuite/build.sh b/recipes/hhsuite/build.sh
index 7dbbef3e25a4d..17e152530bc6a 100644
--- a/recipes/hhsuite/build.sh
+++ b/recipes/hhsuite/build.sh
@@ -1,8 +1,20 @@
 #!/bin/bash
+
+ARCH_BUILD=""
+case $(uname -m) in
+    x86_64) ARCH_BUILD="-DHAVE_SSE4_1=1" ;;
+    arm64|aarch64) ARCH_BUILD="-DHAVE_ARM8=1" ;;
+esac
+
+if [ -z "${ARCH_BUILD}" ]; then
+    echo "Invalid architecture"
+    exit 1
+fi
+
 mkdir -p build && cd build
 cmake -DCHECK_MPI=0 \
       -DHAVE_MPI=0 \
-      -DHAVE_SSE2=1 \
+      ${ARCH_BUILD} \
       -DCMAKE_INSTALL_PREFIX="${PREFIX}" \
       ..
 
diff --git a/recipes/hhsuite/meta.yaml b/recipes/hhsuite/meta.yaml
index e1b23092e49fa..43639d506e046 100644
--- a/recipes/hhsuite/meta.yaml
+++ b/recipes/hhsuite/meta.yaml
@@ -6,7 +6,9 @@ package:
   version: {{ version }}
 
 build:
-  number: 9
+  number: 10
+  run_exports:
+    - {{ pin_subpackage('hhsuite', max_pin="x") }}
 
 source:
   url: https://github.com/soedinglab/hh-suite/archive/v{{ version }}.tar.gz
@@ -47,3 +49,5 @@ extra:
     - biotools:hh-suite
   recipe-maintainers:
     - milot-mirdita
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/hic2cool/meta.yaml b/recipes/hic2cool/meta.yaml
index eb524e89673b7..b06d8470690e2 100644
--- a/recipes/hic2cool/meta.yaml
+++ b/recipes/hic2cool/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "hic2cool" %}
-{% set version = "0.8.3" %}
-{% set sha256 = "2fa1557df8b1b3eddc06df394649e69c0f1f40f1a0c951b26c16c0d3ff81a41e" %}
+{% set version = "1.0.1" %}
+{% set sha256 = "f1f1ffeeec8788819e6ae4b4d1236ba4349dceb98aa4a0b0b3068af30c2a6434" %}
 
 package:
   name: {{ name|lower }}
@@ -12,24 +12,26 @@ source:
 
 build:
   noarch: python
-  number: 2
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  number: 0
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage('hic2cool', max_pin="x") }}
 
 requirements:
   host:
-    - python
-    - setuptools
+    - python >=3.8,<3.10
+    - poetry-core >=1.0.0
     - numpy >=1.10.1
     - scipy
     - pandas
-    - cooler>=0.8.5
+    - cooler >=0.8.5
     - h5py >=2.8.0
   run:
     - python
     - numpy >=1.10.1
     - scipy
     - pandas
-    - cooler>=0.8.5
+    - cooler >=0.8.5
     - h5py >=2.8.0
 
 test:
@@ -43,4 +45,4 @@ about:
   license: MIT
   license_family: MIT
   license_file: LICENSE.txt
-  summary: "A converter between .hic files (from juicer) and .cool files (for cooler)."
+  summary: "A converter between .hic files (from juicer) and single-resolution or multi-resolution .cool files (for cooler)."
diff --git a/recipes/hicap/meta.yaml b/recipes/hicap/meta.yaml
index 6e28fc9954533..ccd261acff7ba 100644
--- a/recipes/hicap/meta.yaml
+++ b/recipes/hicap/meta.yaml
@@ -1,17 +1,22 @@
-{% set version = "1.0.3" %}
+{% set name = "hicap" %}
+{% set version = "1.0.4" %}
 
 package:
-  name: hicap
+  name: {{ name }}
   version: {{ version }}
 
 source:
   url: https://github.com/scwatts/hicap/archive/v{{ version }}.tar.gz
-  sha256: 6be5bc97ea4f6bf00d90381a0551760a38dd576f03e5b8e074d08307860091ae
+  sha256: 053feab67eb38f1b94caf4541054d11d61f705a7fbe579165089f783fc4753d2
 
 build:
-  noarch: python
   number: 0
-  script: "{{ PYTHON }} -m pip install . --no-deps -vv"
+  noarch: python
+  entry_points:
+    - hicap=hicap.main:main
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('hicap', max_pin="x") }}
 
 requirements:
   host:
@@ -29,11 +34,13 @@ test:
     - hicap --help
 
 about:
-  home: https://github.com/scwatts/hicap
+  home: "https://github.com/scwatts/hicap"
   summary: 'In silico typing of the H. influenzae capsule locus'
-  license: GPL-3.0
-  license_family: GPL
+  license: "GPL-3.0-or-later"
+  license_family: GPL3
+  dev_url: "https://github.com/scwatts/hicap"
+  doc_url: "https://github.com/scwatts/hicap/blob/main/README.md"
 
 extra:
   identifiers:
-    - doi:10.1128/JCM.00190-19 # J. Clin. Microbiol paper
+    - doi:10.1128/jcm.00190-19  # J. Clin. Microbiol paper
diff --git a/recipes/hicexplorer/meta.yaml b/recipes/hicexplorer/meta.yaml
index c123fdc53fa78..02e1d69a4de4a 100644
--- a/recipes/hicexplorer/meta.yaml
+++ b/recipes/hicexplorer/meta.yaml
@@ -1,52 +1,54 @@
-{% set version = "3.7.2" %}
+{% set name = "hicexplorer" %}
+{% set version = "3.7.4" %}
 
 package:
-  name: hicexplorer
-  version: '{{ version }}'
+  name: {{ name }}
+  version: {{ version }}
 
 source:
   url: https://github.com/deeptools/HiCExplorer/archive/{{ version }}.tar.gz
-  sha256: dca71065dd4e549d578db96870b8d650b48f3dc852918ef19a345f436f612037
+  sha256: 4c19c0bbb74417a87096ec0c9238bb7e59874020c6c82fadf114efb96d3be0d8
 
 build:
-  number: 1
-  script: "{{ PYTHON }} -m pip install . --no-deps -vv"
+  number: 0
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('hicexplorer', max_pin="x") }}
 
 requirements:
   host:
-    - python >=3.6
+    - python >=3.8
     - pip
   run:
-    - python >=3.6
+    - python >=3.8
     - numpy >=1.19
-    - scipy >=1.5
-    - matplotlib-base >=3.1.*
-    - ipykernel >=5.3.0
+    - scipy >=1.10
+    - matplotlib-base >=3.6
+    - ipykernel >=6.25.2
     - pysam
     - intervaltree
     - biopython
     - pytables
     - pybigwig
-    - pandas >=1.1.*
+    - pandas >=2.0
     - jinja2
-    - cooler >=0.8.10
+    - cooler >=0.9.3
     - future
     - unidecode
-    - hicmatrix >=15
-    - cooler
-    - pygenometracks >=3.5
+    - hicmatrix >=17
+    - pygenometracks >=3.8
     - hic2cool >=0.8.3
-    - fit_nbinom >=1.1
+    - fit_nbinom >=1.2
     - krbalancing >=0.0.5
     - psutil
-    - pybedtools >=0.8
-    - tqdm >=4.50
-    - hyperopt >=0.2.4
-    - python-graphviz >=0.14
-    - scikit-learn >=0.23.2
-    - imbalanced-learn >=0.7.*
-    - cleanlab >=0.1
+    - pybedtools >=0.9
+    - tqdm >=4.66
+    - hyperopt >=0.2.7
+    - python-graphviz >=0.20
+    - scikit-learn >=1.3,<1.4
+    - imbalanced-learn >=0.11
+    - cleanlab >=2.5
 
 test:
   imports:
@@ -93,15 +95,21 @@ test:
     - hicInterIntraTAD --version
     - hicTADClassifier --version
     - hicTrainTADClassifier --version
-    
- 
+
+
 about:
-  home: https://github.com/deeptools/HiCExplorer
-  license: GPL3
+  home: "https://github.com/deeptools/HiCExplorer"
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE
   summary: Set of programs to process, analyze and visualize Hi-C and capture Hi-C data
+  dev_url: "https://github.com/deeptools/HiCExplorer"
+  doc_url: "https://hicexplorer.readthedocs.org/"
 
 extra:
   identifiers:
     - doi:10.1093/nar/gky504
     - doi:10.1093/nar/gkaa220
+    - doi:10.1093/gigascience/giac061
     - usegalaxy-eu:hicexplorer_hicplotviewpoint
+    - biotools:hicexplorer
diff --git a/recipes/hicmatrix/build.sh b/recipes/hicmatrix/build.sh
deleted file mode 100644
index 3786386a73c83..0000000000000
--- a/recipes/hicmatrix/build.sh
+++ /dev/null
@@ -1,3 +0,0 @@
-#!/bin/bash
-
-$PYTHON setup.py install --single-version-externally-managed --record=record.txt
diff --git a/recipes/hicmatrix/meta.yaml b/recipes/hicmatrix/meta.yaml
index 7014531be701c..d30f8fa569fc2 100644
--- a/recipes/hicmatrix/meta.yaml
+++ b/recipes/hicmatrix/meta.yaml
@@ -1,25 +1,25 @@
+{% set name = "hicmatrix" %}
+{% set version = "17.2" %}
+
 package:
-  name: hicmatrix
-  version: 17
+  name: {{ name }}
+  version: {{ version }}
 
 source:
-  url: https://github.com/deeptools/HiCMatrix/archive/refs/tags/17.tar.gz
-  sha256: 40d0d0ed670ca8084bd67ec1fe9eb7aff6c180ca0e0fca277f5ad76d25ed97bb
+  url: https://github.com/deeptools/HiCMatrix/archive/refs/tags/{{ version }}.tar.gz
+  sha256: a2428676b5aad014e7b1653e3effe94f7ea8a68cc78be83e4b67f2255f6b4fbb
 
 build:
   number: 0
   noarch: python
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
+  run_exports:
+    - {{ pin_subpackage('hicmatrix', max_pin="x") }}
 
 requirements:
   host:
     - python >=3.7
-    - setuptools
-    - numpy >=1.20
-    - scipy >=1.2.*
-    - intervaltree >=3.0.*
-    - pytables >=3.5.*
-    - pandas >=0.25.*
-    - cooler >=0.8.10
+    - pip
   run:
     - python >=3.7
     - numpy >=1.20
@@ -28,6 +28,7 @@ requirements:
     - pytables >=3.5.*
     - pandas >=0.25.*
     - cooler >=0.8.10
+    - importlib-metadata  # [py < 38]
 
 test:
   imports:
@@ -35,5 +36,7 @@ test:
 
 about:
   home: https://github.com/deeptools/HiCMatrix
-  license: GPL3
+  license: GPL-3.0-or-later
+  license_family: GPL3
   summary: Library to manage Hi-C matrices for HiCExplorer and pyGenomeTracks
+  dev_url: https://github.com/deeptools/HiCMatrix
diff --git a/recipes/hicstuff/meta.yaml b/recipes/hicstuff/meta.yaml
index 2b643ce89f08e..fe9ff01dcad2e 100644
--- a/recipes/hicstuff/meta.yaml
+++ b/recipes/hicstuff/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "3.1.6" %}
+{% set version = "3.2.2" %}
 
 package:
   name: hicstuff
@@ -6,13 +6,15 @@ package:
 
 source:
   url: https://pypi.io/packages/source/h/hicstuff/hicstuff-{{ version }}.tar.gz
-  sha256: b8c48bc9f903d594ee1b09c96ee0f5f039c5011857e2f2f6c0b4f8be8fedecd1
+  sha256: 8d1dc203fa5352e9b0014ec29d03dc796f2dbc0d51fef1a9b0df4c3aedb4065d
 
 build:
   number: 0
   noarch: python
   entry_points:
     - hicstuff=hicstuff.main:main
+  run_exports:
+    - {{ pin_subpackage('hicstuff', max_pin='x') }}
   script: {{ PYTHON }} -m pip install . --no-deps -vv
 
 requirements:
@@ -35,6 +37,7 @@ requirements:
     - samtools
     - pyfastx
     - coreutils
+    - cooler
 
 test:
   imports:
diff --git a/recipes/hictk/build.sh b/recipes/hictk/build.sh
new file mode 100755
index 0000000000000..237a19ba2e1ad
--- /dev/null
+++ b/recipes/hictk/build.sh
@@ -0,0 +1,76 @@
+#!/bin/bash
+
+export CONAN_NON_INTERACTIVE=1
+
+export CMAKE_BUILD_PARALLEL_LEVEL=1 # ${CPU_COUNT}
+export CTEST_PARALLEL_LEVEL=${CPU_COUNT}
+
+if [[ ${DEBUG_C} == yes ]]; then
+  CMAKE_BUILD_TYPE=Debug
+else
+  CMAKE_BUILD_TYPE=Release
+fi
+
+scratch=$(mktemp -d)
+export CONAN_HOME="$scratch/conan"
+
+# shellcheck disable=SC2064
+trap "rm -rf '$scratch'" EXIT
+
+declare -a CMAKE_PLATFORM_FLAGS
+if [[ ${HOST} =~ .*darwin.* ]]; then
+  export MACOSX_DEPLOYMENT_TARGET=10.15  # Required to use std::filesystem
+  CMAKE_PLATFORM_FLAGS+=(-DCMAKE_OSX_SYSROOT="${CONDA_BUILD_SYSROOT}")
+  conan_profile='apple-clang'
+else
+  CMAKE_PLATFORM_FLAGS+=(-DCMAKE_TOOLCHAIN_FILE="${RECIPE_DIR}/cross-linux.cmake")
+  conan_profile='gcc'
+fi
+
+# Remember to update these profiles when bioconda's compiler toolchains are updated
+mkdir -p "$CONAN_HOME/profiles/"
+ln -s "${RECIPE_DIR}/conan_profiles/$conan_profile" "$CONAN_HOME/profiles/$conan_profile"
+
+# Remove unnecessary dependencies from conanfile.txt
+patch conanfile.txt < "${RECIPE_DIR}/conanfile.txt.patch"
+
+# Install header-only deps
+conan install conanfile.txt \
+       --build="*" \
+       -pr:b "$conan_profile" \
+       -pr:h "$conan_profile" \
+       --output-folder=build/
+
+# Add bioconda suffix to hictk version
+sed -i.bak 's/set(HICTK_PROJECT_VERSION_SUFFIX "")/set(HICTK_PROJECT_VERSION_SUFFIX "bioconda")/' cmake/Versioning.cmake
+
+CMAKE_PREFIX_PATH="$CMAKE_PREFIX_PATH:$PWD/build"
+
+# https://docs.conda.io/projects/conda-build/en/stable/user-guide/environment-variables.html#environment-variables-set-during-the-build-process
+cmake -DCMAKE_BUILD_TYPE="$CMAKE_BUILD_TYPE"   \
+      -DCMAKE_PREFIX_PATH="$CMAKE_PREFIX_PATH" \
+      -DBUILD_SHARED_LIBS=ON                   \
+      -DENABLE_DEVELOPER_MODE=OFF              \
+      -DHICTK_ENABLE_TESTING=ON                \
+      -DHICTK_BUILD_EXAMPLES=OFF               \
+      -DHICTK_BUILD_BENCHMARKS=OFF             \
+      -DHICTK_BUILD_TOOLS=ON                   \
+      -DHICTK_ENABLE_GIT_VERSION_TRACKING=OFF  \
+      -DCMAKE_INSTALL_PREFIX="$PREFIX"         \
+      -DCMAKE_C_COMPILER="$CC"                 \
+      -DCMAKE_CXX_COMPILER="$CXX"              \
+      "${CMAKE_PLATFORM_FLAGS[@]}"             \
+      -B build/                                \
+      -S .
+
+cmake --build build/
+
+ctest --test-dir build/   \
+      --schedule-random   \
+      --output-on-failure \
+      --no-tests=error    \
+      --timeout 100
+
+cmake --install build/
+
+"${PREFIX}/bin/hictk" --version
diff --git a/recipes/hictk/conan_profiles/apple-clang b/recipes/hictk/conan_profiles/apple-clang
new file mode 100644
index 0000000000000..6dc3813c7eae6
--- /dev/null
+++ b/recipes/hictk/conan_profiles/apple-clang
@@ -0,0 +1,9 @@
+[settings]
+arch=x86_64
+build_type=Release
+compiler=apple-clang
+compiler.cppstd=17
+compiler.libcxx=libc++
+compiler.version=15
+os=Macos
+os.version="10.15"
diff --git a/recipes/hictk/conan_profiles/gcc b/recipes/hictk/conan_profiles/gcc
new file mode 100644
index 0000000000000..ef7e2f6219ff1
--- /dev/null
+++ b/recipes/hictk/conan_profiles/gcc
@@ -0,0 +1,8 @@
+[settings]
+arch=x86_64
+build_type=Release
+compiler=gcc
+compiler.cppstd=17
+compiler.libcxx=libstdc++11
+compiler.version=13
+os=Linux
diff --git a/recipes/hictk/conanfile.txt.patch b/recipes/hictk/conanfile.txt.patch
new file mode 100644
index 0000000000000..294d8196b80d7
--- /dev/null
+++ b/recipes/hictk/conanfile.txt.patch
@@ -0,0 +1,38 @@
+diff --git a/conanfile.txt b/conanfile.txt
+index c76a83a..434833d 100644
+--- a/conanfile.txt
++++ b/conanfile.txt
+@@ -4,33 +4,12 @@
+ 
+ [requires]
+ bshoshany-thread-pool/4.1.0#be1802a8768416a6c9b1393cf0ce5e9c
+-catch2/3.5.4#d346ca291f8f62040fd9c1a891654711
+-cli11/2.4.1#afacffd31f631bbb8b7c7d6425fe7a66
+ concurrentqueue/1.0.4#1e48e1c712bcfd892087c9c622a51502
+-eigen/3.4.0#2e192482a8acff96fe34766adca2b24c
+-fast_float/6.1.1#e29acaa3d0543dee343abe3f6815346e
+-fmt/10.2.1#9199a7a0611866dea5c8849a77467b25
+-hdf5/1.14.3#31ccd8d4de83844f5db48471df1944a1
+-highfive/2.9.0#c57477beed8b0110fadeb6da8f48bcc5
+-libdeflate/1.19#3ea74a4549efc14d4b1202dc4bfbf602
+ parallel-hashmap/1.3.11#1e67f4855a3f7cdeb977cc472113baf7
+ readerwriterqueue/1.0.6#aaa5ff6fac60c2aee591e9e51b063b83
+ span-lite/0.11.0#519fd49fff711674cfed8cd17d4ed422
+-spdlog/1.13.0#8e88198fd5b9ee31d329431a6d0ccaa2
+-zstd/1.5.6#67383dae85d33f43823e7751a6745ea1
+ 
+ [generators]
+ CMakeDeps
+ 
+ [options]
+-fmt*:header_only=True
+-hdf5*:enable_cxx=False
+-hdf5*:hl=False
+-hdf5*:threadsafe=False
+-hdf5*:parallel=False
+-highfive*:with_boost=False
+-highfive*:with_eigen=False
+-highfive*:with_opencv=False
+-highfive*:with_xtensor=False
+-spdlog*:header_only=True
+-zstd*:build_programs=False
diff --git a/recipes/hictk/cross-linux.cmake b/recipes/hictk/cross-linux.cmake
new file mode 100644
index 0000000000000..b8f90c3409b9d
--- /dev/null
+++ b/recipes/hictk/cross-linux.cmake
@@ -0,0 +1,21 @@
+# this one is important
+set(CMAKE_SYSTEM_NAME Linux)
+set(CMAKE_PLATFORM Linux)
+#this one not so much
+set(CMAKE_SYSTEM_VERSION 1)
+
+# specify the cross compiler
+set(CMAKE_C_COMPILER $ENV{CC})
+set(CMAKE_CXX_COMPILER $ENV{CXX})
+
+# where is the target environment
+set(CMAKE_FIND_ROOT_PATH $ENV{PREFIX} $ENV{BUILD_PREFIX}/$ENV{HOST}/sysroot)
+
+# search for programs in the build host directories
+set(CMAKE_FIND_ROOT_PATH_MODE_PROGRAM NEVER)
+# for libraries and headers in the target directories
+set(CMAKE_FIND_ROOT_PATH_MODE_LIBRARY ONLY)
+set(CMAKE_FIND_ROOT_PATH_MODE_INCLUDE ONLY)
+
+# god-awful hack because it seems to not run correct tests to determine this:
+set(__CHAR_UNSIGNED___EXITCODE 1)
diff --git a/recipes/hictk/meta.yaml b/recipes/hictk/meta.yaml
new file mode 100644
index 0000000000000..38ec7eed97116
--- /dev/null
+++ b/recipes/hictk/meta.yaml
@@ -0,0 +1,100 @@
+{% set name = "hictk" %}
+{% set version = "0.0.12" %}
+{% set sha256 = "03e8f7c0076ea6209fdfee1580658e871895f6a59b895407c4a25512b9558fb7" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('hictk', max_pin='x.x') }}
+
+source:
+  url: https://github.com/paulsengroup/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - cmake >=3.25
+    - conan >=2
+    - make
+    - catch2 >=3.5
+    - cli11 >=2.3
+    - eigen >=3.4
+    - fast_float >=5
+    - fmt >=10
+    - highfive >=2.8
+    - spdlog >=1.12
+
+  host:
+    - hdf5 >=1.12
+    - libdeflate
+    - zstd >=1.5
+
+  run:
+    - hdf5 >=1.12
+    - libdeflate
+    - zstd >=1.5
+
+about:
+  home: https://github.com/paulsengroup/{{ name }}
+  license: MIT
+  license_file: LICENSE
+  summary: Blazing fast toolkit to work with .hic and .cool files
+  dev_url: https://github.com/paulsengroup/{{ name }}
+  doc_url: https://github.com/paulsengroup/{{ name }}#readme
+
+test:
+  requires:
+    - curl
+    - cooler>=0.9.3
+    - perl-digest-sha1
+    - xz
+  source_files:
+    - cmake/FetchTestDataset.cmake
+    - test/scripts/check_test_files_exist.sh
+    - test/scripts/compare_matrix_files.sh
+    - test/scripts/compare_plain_files.sh
+    - test/scripts/compare_weights.py
+    - test/scripts/hictk_balance_ice.sh
+    - test/scripts/hictk_balance_scale.sh
+    - test/scripts/hictk_balance_vc.sh
+    - test/scripts/hictk_convert_hic2cool.sh
+    - test/scripts/hictk_convert_cool2hic.sh
+    - test/scripts/hictk_dump_cells.sh
+    - test/scripts/hictk_dump_normalizations.sh
+    - test/scripts/hictk_dump_resolutions.sh
+    - test/scripts/hictk_dump_chroms.sh
+    - test/scripts/hictk_dump_bins.sh
+    - test/scripts/hictk_dump_gw.sh
+    - test/scripts/hictk_dump_cis.sh
+    - test/scripts/hictk_dump_trans.sh
+    - test/scripts/hictk_dump_balanced.sh
+    - test/scripts/hictk_fix_mcool.sh
+    - test/scripts/hictk_load_coo.sh
+    - test/scripts/hictk_load_bg2.sh
+    - test/scripts/hictk_load_4dn.sh
+    - test/scripts/hictk_merge.sh
+    - test/scripts/hictk_rename_chromosomes.sh
+    - test/scripts/hictk_validate.sh
+    - test/scripts/hictk_zoomify.sh
+    - test/scripts/nproc.sh
+    - test/scripts/readlink.sh
+    - test/scripts/shuffle.sh
+  commands:
+    - hictk --help
+    - hictk --version
+
+extra:
+  recipe-maintainers:
+    - robomics
+    - jonnings
+  identifiers:
+    - biotools:hictk
+    - doi:10.5281/zenodo.8214221
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/hictk/run_test.sh b/recipes/hictk/run_test.sh
new file mode 100755
index 0000000000000..40324b44eca22
--- /dev/null
+++ b/recipes/hictk/run_test.sh
@@ -0,0 +1,49 @@
+#!/bin/bash
+
+set -e
+set -u
+set -x
+set -o pipefail
+
+# Extract test dataset URL and checksum
+url="$(grep -F 'DOWNLOAD' 'cmake/FetchTestDataset.cmake' | sed -E 's/.*DOWNLOAD[[:space:]]+//')"
+checksum="$(grep -F 'EXPECTED_HASH' 'cmake/FetchTestDataset.cmake' | sed 's/.*SHA256=//')"
+
+# Download and extract test datasets
+curl -L "$url" -o hictk_test_dataset.tar.xz
+echo "$checksum  hictk_test_dataset.tar.xz" > checksum.sha256
+shasum -c checksum.sha256
+
+tar -xf hictk_test_dataset.tar.xz
+
+hictk="$(which hictk)"
+
+# Run integration tests
+
+test/scripts/hictk_balance_ice.sh "$hictk"
+test/scripts/hictk_balance_scale.sh "$hictk"
+test/scripts/hictk_balance_vc.sh "$hictk"
+
+test/scripts/hictk_dump_chroms.sh "$hictk"
+test/scripts/hictk_dump_bins.sh "$hictk"
+test/scripts/hictk_dump_gw.sh "$hictk"
+test/scripts/hictk_dump_cis.sh "$hictk"
+test/scripts/hictk_dump_trans.sh "$hictk"
+test/scripts/hictk_dump_balanced.sh "$hictk"
+
+test/scripts/hictk_convert_hic2cool.sh "$hictk"
+test/scripts/hictk_convert_cool2hic.sh "$hictk"
+
+test/scripts/hictk_load_coo.sh "$hictk" sorted
+test/scripts/hictk_load_coo.sh "$hictk" unsorted
+test/scripts/hictk_load_bg2.sh "$hictk" sorted
+test/scripts/hictk_load_bg2.sh "$hictk" unsorted
+test/scripts/hictk_load_4dn.sh "$hictk"
+
+test/scripts/hictk_merge.sh "$hictk"
+
+test/scripts/hictk_rename_chromosomes.sh "$hictk"
+
+test/scripts/hictk_validate.sh "$hictk"
+
+test/scripts/hictk_zoomify.sh "$hictk"
diff --git a/recipes/hictkpy/CMakeLists.txt.patch b/recipes/hictkpy/CMakeLists.txt.patch
new file mode 100644
index 0000000000000..a5c3cb5839689
--- /dev/null
+++ b/recipes/hictkpy/CMakeLists.txt.patch
@@ -0,0 +1,13 @@
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index 01a1413..b0dcdb4 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -17,6 +17,8 @@ set(CMAKE_C_STANDARD 11)
+ # -std=gnu++20 for example when compiling with PCH enabled
+ set(CMAKE_CXX_EXTENSIONS OFF)
+ 
++set(CMAKE_OSX_DEPLOYMENT_TARGET 10.15)
++
+ project(
+   hictkpy
+   LANGUAGES C CXX
diff --git a/recipes/hictkpy/build.sh b/recipes/hictkpy/build.sh
new file mode 100755
index 0000000000000..a6d756aa71a09
--- /dev/null
+++ b/recipes/hictkpy/build.sh
@@ -0,0 +1,41 @@
+#!/bin/bash
+
+# export CMAKE_BUILD_PARALLEL_LEVEL=${CPU_COUNT}
+
+scratch=$(mktemp -d)
+export CONAN_HOME="$scratch/conan"
+
+# shellcheck disable=SC2064
+trap "rm -rf '$scratch'" EXIT
+
+declare -a CMAKE_PLATFORM_FLAGS
+if [[ ${HOST} =~ .*darwin.* ]]; then
+  export MACOSX_DEPLOYMENT_TARGET=10.15  # Required to use std::filesystem
+  CMAKE_PLATFORM_FLAGS+=(-DCMAKE_OSX_SYSROOT="${CONDA_BUILD_SYSROOT}")
+  conan_profile='apple-clang'
+else
+  CMAKE_PLATFORM_FLAGS+=(-DCMAKE_TOOLCHAIN_FILE="${RECIPE_DIR}/cross-linux.cmake")
+  conan_profile='gcc'
+fi
+
+# Remember to update these profiles when bioconda's compiler toolchains are updated
+mkdir -p "$CONAN_HOME/profiles/"
+ln -s "${RECIPE_DIR}/conan_profiles/$conan_profile" "$CONAN_HOME/profiles/default"
+
+# explicitly set CMAKE_OSX_DEPLOYMENT_TARGET
+patch CMakeLists.txt < "${RECIPE_DIR}/CMakeLists.txt.patch"
+
+# Remove unnecessary dependencies from conanfile.txt
+patch conanfile.txt < "${RECIPE_DIR}/conanfile.txt.patch"
+
+# Build hictkpy as a shared library
+patch pyproject.toml < "${RECIPE_DIR}/pyproject.toml.patch"
+
+CMAKE_ARGS+=" -DPython_EXECUTABLE=$PYTHON"
+
+echo "$CMAKE_ARGS"
+export CMAKE_ARGS
+
+SETUPTOOLS_SCM_PRETEND_VERSION="$PKG_VERSION" \
+"$PYTHON" -m pip install "$SRC_DIR" -vv
+
diff --git a/recipes/hictkpy/conan_profiles/apple-clang b/recipes/hictkpy/conan_profiles/apple-clang
new file mode 100644
index 0000000000000..6dc3813c7eae6
--- /dev/null
+++ b/recipes/hictkpy/conan_profiles/apple-clang
@@ -0,0 +1,9 @@
+[settings]
+arch=x86_64
+build_type=Release
+compiler=apple-clang
+compiler.cppstd=17
+compiler.libcxx=libc++
+compiler.version=15
+os=Macos
+os.version="10.15"
diff --git a/recipes/hictkpy/conan_profiles/gcc b/recipes/hictkpy/conan_profiles/gcc
new file mode 100644
index 0000000000000..ef7e2f6219ff1
--- /dev/null
+++ b/recipes/hictkpy/conan_profiles/gcc
@@ -0,0 +1,8 @@
+[settings]
+arch=x86_64
+build_type=Release
+compiler=gcc
+compiler.cppstd=17
+compiler.libcxx=libstdc++11
+compiler.version=13
+os=Linux
diff --git a/recipes/hictkpy/conanfile.txt.patch b/recipes/hictkpy/conanfile.txt.patch
new file mode 100644
index 0000000000000..038babbd4c0df
--- /dev/null
+++ b/recipes/hictkpy/conanfile.txt.patch
@@ -0,0 +1,35 @@
+diff --git a/conanfile.txt b/conanfile.txt
+index cffb547..66cf415 100644
+--- a/conanfile.txt
++++ b/conanfile.txt
+@@ -5,30 +5,12 @@
+ [requires]
+ bshoshany-thread-pool/4.1.0#be1802a8768416a6c9b1393cf0ce5e9c
+ concurrentqueue/1.0.4#1e48e1c712bcfd892087c9c622a51502
+-fast_float/6.1.1#e29acaa3d0543dee343abe3f6815346e
+-fmt/10.2.1#9199a7a0611866dea5c8849a77467b25
+-hdf5/1.14.3#31ccd8d4de83844f5db48471df1944a1
+-highfive/2.9.0#c57477beed8b0110fadeb6da8f48bcc5
+-libdeflate/1.19#3ea74a4549efc14d4b1202dc4bfbf602
+ parallel-hashmap/1.3.11#1e67f4855a3f7cdeb977cc472113baf7
+ readerwriterqueue/1.0.6#aaa5ff6fac60c2aee591e9e51b063b83
+ span-lite/0.11.0#519fd49fff711674cfed8cd17d4ed422
+-spdlog/1.13.0#2775cc949e26b339029a852785b6b276
+-zstd/1.5.6#67383dae85d33f43823e7751a6745ea1
+ 
+ [generators]
+ CMakeDeps
+ 
+ [options]
+-fmt*:header_only=True
+-hdf5*:enable_cxx=False
+-hdf5*:hl=False
+-hdf5*:threadsafe=False
+-hdf5*:parallel=False
+-highfive*:with_boost=False
+-highfive*:with_eigen=False
+-highfive*:with_opencv=False
+-highfive*:with_xtensor=False
+-spdlog*:header_only=True
+-zstd*:build_programs=False
+ 
diff --git a/recipes/hictkpy/cross-linux.cmake b/recipes/hictkpy/cross-linux.cmake
new file mode 100644
index 0000000000000..b8f90c3409b9d
--- /dev/null
+++ b/recipes/hictkpy/cross-linux.cmake
@@ -0,0 +1,21 @@
+# this one is important
+set(CMAKE_SYSTEM_NAME Linux)
+set(CMAKE_PLATFORM Linux)
+#this one not so much
+set(CMAKE_SYSTEM_VERSION 1)
+
+# specify the cross compiler
+set(CMAKE_C_COMPILER $ENV{CC})
+set(CMAKE_CXX_COMPILER $ENV{CXX})
+
+# where is the target environment
+set(CMAKE_FIND_ROOT_PATH $ENV{PREFIX} $ENV{BUILD_PREFIX}/$ENV{HOST}/sysroot)
+
+# search for programs in the build host directories
+set(CMAKE_FIND_ROOT_PATH_MODE_PROGRAM NEVER)
+# for libraries and headers in the target directories
+set(CMAKE_FIND_ROOT_PATH_MODE_LIBRARY ONLY)
+set(CMAKE_FIND_ROOT_PATH_MODE_INCLUDE ONLY)
+
+# god-awful hack because it seems to not run correct tests to determine this:
+set(__CHAR_UNSIGNED___EXITCODE 1)
diff --git a/recipes/hictkpy/meta.yaml b/recipes/hictkpy/meta.yaml
new file mode 100644
index 0000000000000..22be84e3abea8
--- /dev/null
+++ b/recipes/hictkpy/meta.yaml
@@ -0,0 +1,71 @@
+{% set name = "hictkpy" %}
+{% set version = "0.0.5" %}
+{% set sha256 = "e9576a1a719ce378873da15b76e9f7e699748c0486901607e4d7e87c3f0c6556" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+build:
+  number: 0
+  skip: True  # [py < 39]
+  run_exports:
+    - {{ pin_subpackage('hictkpy', max_pin='x.x') }}
+
+source:
+  url: https://github.com/paulsengroup/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - cmake >=3.25
+    - conan >=2
+    - make
+    - fast_float >=5
+    - fmt >=10
+    - highfive >=2.7
+    - spdlog >=1.12
+  host:
+    - python
+    - hdf5 >=1.12
+    - libdeflate
+    - scikit-build-core
+    - setuptools_scm
+    - zstd >=1.5
+
+  run:
+    - python
+    - hdf5 >=1.12
+    - libdeflate
+    - numpy
+    - pandas
+    - scipy
+    - zstd >=1.5
+
+about:
+  home: https://github.com/paulsengroup/{{ name }}
+  license: MIT
+  license_file: LICENSE
+  summary: Python bindings for hictk
+  dev_url: https://github.com/paulsengroup/{{ name }}
+  doc_url: https://github.com/paulsengroup/{{ name }}#readme
+
+test:
+   requires:
+     - pytest>=6
+   source_files:
+     - test/*
+   imports:
+     - hictkpy
+
+extra:
+  recipe-maintainers:
+    - robomics
+    - jonnings
+  identifiers:
+    - biotools:hictkpy
+    - doi:10.5281/zenodo.8220300
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/hictkpy/pyproject.toml.patch b/recipes/hictkpy/pyproject.toml.patch
new file mode 100644
index 0000000000000..6763068194b11
--- /dev/null
+++ b/recipes/hictkpy/pyproject.toml.patch
@@ -0,0 +1,13 @@
+diff --git a/pyproject.toml b/pyproject.toml
+index 1a03623..36102d0 100644
+--- a/pyproject.toml
++++ b/pyproject.toml
+@@ -49,7 +49,7 @@ HICTK_BUILD_EXAMPLES = "OFF"
+ HICTK_BUILD_BENCHMARKS = "OFF"
+ HICTK_BUILD_TOOLS = "OFF"
+ HICTK_ENABLE_GIT_VERSION_TRACKING = "OFF"
+-BUILD_SHARED_LIBS = "OFF"
++BUILD_SHARED_LIBS = "ON"
+ CONAN_INSTALL_ARGS = "--settings=compiler.cppstd=17;--build=missing;--update;--options=*/*:shared=False"
+ 
+ [tool.setuptools_scm]
diff --git a/recipes/hictkpy/run_test.sh b/recipes/hictkpy/run_test.sh
new file mode 100644
index 0000000000000..a6729f994b26e
--- /dev/null
+++ b/recipes/hictkpy/run_test.sh
@@ -0,0 +1,4 @@
+#!/usr/bin/env bash
+
+"$PYTHON" -c 'import hictkpy; print(hictkpy.__version__)'
+"$PYTHON" -m pytest test
diff --git a/recipes/hifiasm/build.sh b/recipes/hifiasm/build.sh
index 9d579b2c893d6..ed1119d4f315b 100644
--- a/recipes/hifiasm/build.sh
+++ b/recipes/hifiasm/build.sh
@@ -2,6 +2,15 @@
 
 mkdir -p $PREFIX/bin
 
+ARCH_OPTS=""
+case $(uname -m) in
+    x86_64)
+        ARCH_OPTS="-msse4.2 -mpopcnt"
+        ;;
+    *)
+        ;;
+esac
+
 sed -i.bak 's/CXXFLAGS=.*//' Makefile
-make INCLUDES="-I$PREFIX/include" CXXFLAGS="-L$PREFIX/lib -g -O3 -msse4.2 -mpopcnt -fomit-frame-pointer -Wall" CC=${CC} CXX=${CXX}
+make INCLUDES="-I$PREFIX/include" CXXFLAGS="-L$PREFIX/lib -g -O3 ${ARCH_OPTS} -fomit-frame-pointer -Wall" CC=${CC} CXX=${CXX}
 cp hifiasm $PREFIX/bin
diff --git a/recipes/hifiasm/linux-aarch64-support.patch b/recipes/hifiasm/linux-aarch64-support.patch
new file mode 100644
index 0000000000000..f93a6fcd3fa4e
--- /dev/null
+++ b/recipes/hifiasm/linux-aarch64-support.patch
@@ -0,0 +1,9362 @@
+From 98192bf4808ce7ae40dcb9731e6968ffc985e75a Mon Sep 17 00:00:00 2001
+From: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
+Date: Sat, 27 Apr 2024 10:48:00 +0300
+Subject: [PATCH 1/3] Use sse2neon.h when running on ARM64
+
+Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
+---
+ Levenshtein_distance.h |    4 +
+ ksw2_extz2_sse.c       |    4 +
+ sse2neon.h             | 9284 ++++++++++++++++++++++++++++++++++++++++
+ 3 files changed, 9292 insertions(+)
+ create mode 100644 sse2neon.h
+
+diff --git a/Levenshtein_distance.h b/Levenshtein_distance.h
+index 592f1b5..ddd6df5 100644
+--- a/Levenshtein_distance.h
++++ b/Levenshtein_distance.h
+@@ -3,10 +3,14 @@
+ 
+ #define __STDC_LIMIT_MACROS
+ #include <stdint.h>
++#ifdef __ARM_NEON
++#include "sse2neon.h"
++#else
+ #include "emmintrin.h"
+ #include "nmmintrin.h"
+ #include "smmintrin.h"
+ #include <immintrin.h>
++#endif // ~__ARM_NEON
+ #include <string.h>
+ #include <stdlib.h>
+ #include <stdio.h>
+diff --git a/ksw2_extz2_sse.c b/ksw2_extz2_sse.c
+index 02bb4c2..d17f067 100644
+--- a/ksw2_extz2_sse.c
++++ b/ksw2_extz2_sse.c
+@@ -3,7 +3,11 @@
+ #include "ksw2.h"
+ 
+ #ifdef __SSE2__
++#ifdef __ARM_NEON
++#include "sse2neon.h"
++#else
+ #include <emmintrin.h>
++#endif // ~__ARM_NEON
+ 
+ #ifdef KSW_SSE2_ONLY
+ #undef __SSE4_1__
+diff --git a/sse2neon.h b/sse2neon.h
+new file mode 100644
+index 0000000..48da95f
+--- /dev/null
++++ b/sse2neon.h
+@@ -0,0 +1,9284 @@
++#ifndef SSE2NEON_H
++#define SSE2NEON_H
++
++/*
++ * sse2neon is freely redistributable under the MIT License.
++ *
++ * Copyright (c) 2015-2024 SSE2NEON Contributors.
++ *
++ * Permission is hereby granted, free of charge, to any person obtaining a copy
++ * of this software and associated documentation files (the "Software"), to deal
++ * in the Software without restriction, including without limitation the rights
++ * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
++ * copies of the Software, and to permit persons to whom the Software is
++ * furnished to do so, subject to the following conditions:
++ *
++ * The above copyright notice and this permission notice shall be included in
++ * all copies or substantial portions of the Software.
++ *
++ * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
++ * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
++ * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
++ * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
++ * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
++ * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
++ * SOFTWARE.
++ */
++
++// This header file provides a simple API translation layer
++// between SSE intrinsics to their corresponding Arm/Aarch64 NEON versions
++//
++// Contributors to this work are:
++//   John W. Ratcliff <jratcliffscarab@gmail.com>
++//   Brandon Rowlett <browlett@nvidia.com>
++//   Ken Fast <kfast@gdeb.com>
++//   Eric van Beurden <evanbeurden@nvidia.com>
++//   Alexander Potylitsin <apotylitsin@nvidia.com>
++//   Hasindu Gamaarachchi <hasindu2008@gmail.com>
++//   Jim Huang <jserv@ccns.ncku.edu.tw>
++//   Mark Cheng <marktwtn@gmail.com>
++//   Malcolm James MacLeod <malcolm@gulden.com>
++//   Devin Hussey (easyaspi314) <husseydevin@gmail.com>
++//   Sebastian Pop <spop@amazon.com>
++//   Developer Ecosystem Engineering <DeveloperEcosystemEngineering@apple.com>
++//   Danila Kutenin <danilak@google.com>
++//   François Turban (JishinMaster) <francois.turban@gmail.com>
++//   Pei-Hsuan Hung <afcidk@gmail.com>
++//   Yang-Hao Yuan <yuanyanghau@gmail.com>
++//   Syoyo Fujita <syoyo@lighttransport.com>
++//   Brecht Van Lommel <brecht@blender.org>
++//   Jonathan Hue <jhue@adobe.com>
++//   Cuda Chen <clh960524@gmail.com>
++//   Aymen Qader <aymen.qader@arm.com>
++//   Anthony Roberts <anthony.roberts@linaro.org>
++
++/* Tunable configurations */
++
++/* Enable precise implementation of math operations
++ * This would slow down the computation a bit, but gives consistent result with
++ * x86 SSE. (e.g. would solve a hole or NaN pixel in the rendering result)
++ */
++/* _mm_min|max_ps|ss|pd|sd */
++#ifndef SSE2NEON_PRECISE_MINMAX
++#define SSE2NEON_PRECISE_MINMAX (0)
++#endif
++/* _mm_rcp_ps and _mm_div_ps */
++#ifndef SSE2NEON_PRECISE_DIV
++#define SSE2NEON_PRECISE_DIV (0)
++#endif
++/* _mm_sqrt_ps and _mm_rsqrt_ps */
++#ifndef SSE2NEON_PRECISE_SQRT
++#define SSE2NEON_PRECISE_SQRT (0)
++#endif
++/* _mm_dp_pd */
++#ifndef SSE2NEON_PRECISE_DP
++#define SSE2NEON_PRECISE_DP (0)
++#endif
++
++/* Enable inclusion of windows.h on MSVC platforms
++ * This makes _mm_clflush functional on windows, as there is no builtin.
++ */
++#ifndef SSE2NEON_INCLUDE_WINDOWS_H
++#define SSE2NEON_INCLUDE_WINDOWS_H (0)
++#endif
++
++/* compiler specific definitions */
++#if defined(__GNUC__) || defined(__clang__)
++#pragma push_macro("FORCE_INLINE")
++#pragma push_macro("ALIGN_STRUCT")
++#define FORCE_INLINE static inline __attribute__((always_inline))
++#define ALIGN_STRUCT(x) __attribute__((aligned(x)))
++#define _sse2neon_likely(x) __builtin_expect(!!(x), 1)
++#define _sse2neon_unlikely(x) __builtin_expect(!!(x), 0)
++#elif defined(_MSC_VER)
++#if _MSVC_TRADITIONAL
++#error Using the traditional MSVC preprocessor is not supported! Use /Zc:preprocessor instead.
++#endif
++#ifndef FORCE_INLINE
++#define FORCE_INLINE static inline
++#endif
++#ifndef ALIGN_STRUCT
++#define ALIGN_STRUCT(x) __declspec(align(x))
++#endif
++#define _sse2neon_likely(x) (x)
++#define _sse2neon_unlikely(x) (x)
++#else
++#pragma message("Macro name collisions may happen with unsupported compilers.")
++#endif
++
++#if !defined(__clang__) && defined(__GNUC__) && __GNUC__ < 10
++#warning "GCC versions earlier than 10 are not supported."
++#endif
++
++/* C language does not allow initializing a variable with a function call. */
++#ifdef __cplusplus
++#define _sse2neon_const static const
++#else
++#define _sse2neon_const const
++#endif
++
++#include <stdint.h>
++#include <stdlib.h>
++
++#if defined(_WIN32)
++/* Definitions for _mm_{malloc,free} are provided by <malloc.h>
++ * from both MinGW-w64 and MSVC.
++ */
++#define SSE2NEON_ALLOC_DEFINED
++#endif
++
++/* If using MSVC */
++#ifdef _MSC_VER
++#include <intrin.h>
++#if SSE2NEON_INCLUDE_WINDOWS_H
++#include <processthreadsapi.h>
++#include <windows.h>
++#endif
++
++#if !defined(__cplusplus)
++#error SSE2NEON only supports C++ compilation with this compiler
++#endif
++
++#ifdef SSE2NEON_ALLOC_DEFINED
++#include <malloc.h>
++#endif
++
++#if (defined(_M_AMD64) || defined(__x86_64__)) || \
++    (defined(_M_ARM64) || defined(__arm64__))
++#define SSE2NEON_HAS_BITSCAN64
++#endif
++#endif
++
++#if defined(__GNUC__) || defined(__clang__)
++#define _sse2neon_define0(type, s, body) \
++    __extension__({                      \
++        type _a = (s);                   \
++        body                             \
++    })
++#define _sse2neon_define1(type, s, body) \
++    __extension__({                      \
++        type _a = (s);                   \
++        body                             \
++    })
++#define _sse2neon_define2(type, a, b, body) \
++    __extension__({                         \
++        type _a = (a), _b = (b);            \
++        body                                \
++    })
++#define _sse2neon_return(ret) (ret)
++#else
++#define _sse2neon_define0(type, a, body) [=](type _a) { body }(a)
++#define _sse2neon_define1(type, a, body) [](type _a) { body }(a)
++#define _sse2neon_define2(type, a, b, body) \
++    [](type _a, type _b) { body }((a), (b))
++#define _sse2neon_return(ret) return ret
++#endif
++
++#define _sse2neon_init(...) \
++    {                       \
++        __VA_ARGS__         \
++    }
++
++/* Compiler barrier */
++#if defined(_MSC_VER)
++#define SSE2NEON_BARRIER() _ReadWriteBarrier()
++#else
++#define SSE2NEON_BARRIER()                     \
++    do {                                       \
++        __asm__ __volatile__("" ::: "memory"); \
++        (void) 0;                              \
++    } while (0)
++#endif
++
++/* Memory barriers
++ * __atomic_thread_fence does not include a compiler barrier; instead,
++ * the barrier is part of __atomic_load/__atomic_store's "volatile-like"
++ * semantics.
++ */
++#if defined(__STDC_VERSION__) && (__STDC_VERSION__ >= 201112L)
++#include <stdatomic.h>
++#endif
++
++FORCE_INLINE void _sse2neon_smp_mb(void)
++{
++    SSE2NEON_BARRIER();
++#if defined(__STDC_VERSION__) && (__STDC_VERSION__ >= 201112L) && \
++    !defined(__STDC_NO_ATOMICS__)
++    atomic_thread_fence(memory_order_seq_cst);
++#elif defined(__GNUC__) || defined(__clang__)
++    __atomic_thread_fence(__ATOMIC_SEQ_CST);
++#else /* MSVC */
++    __dmb(_ARM64_BARRIER_ISH);
++#endif
++}
++
++/* Architecture-specific build options */
++/* FIXME: #pragma GCC push_options is only available on GCC */
++#if defined(__GNUC__)
++#if defined(__arm__) && __ARM_ARCH == 7
++/* According to ARM C Language Extensions Architecture specification,
++ * __ARM_NEON is defined to a value indicating the Advanced SIMD (NEON)
++ * architecture supported.
++ */
++#if !defined(__ARM_NEON) || !defined(__ARM_NEON__)
++#error "You must enable NEON instructions (e.g. -mfpu=neon) to use SSE2NEON."
++#endif
++#if !defined(__clang__)
++#pragma GCC push_options
++#pragma GCC target("fpu=neon")
++#endif
++#elif defined(__aarch64__) || defined(_M_ARM64)
++#if !defined(__clang__) && !defined(_MSC_VER)
++#pragma GCC push_options
++#pragma GCC target("+simd")
++#endif
++#elif __ARM_ARCH == 8
++#if !defined(__ARM_NEON) || !defined(__ARM_NEON__)
++#error \
++    "You must enable NEON instructions (e.g. -mfpu=neon-fp-armv8) to use SSE2NEON."
++#endif
++#if !defined(__clang__) && !defined(_MSC_VER)
++#pragma GCC push_options
++#endif
++#else
++#error \
++    "Unsupported target. Must be either ARMv7-A+NEON or ARMv8-A \
++(you could try setting target explicitly with -march or -mcpu)"
++#endif
++#endif
++
++#include <arm_neon.h>
++#if (!defined(__aarch64__) && !defined(_M_ARM64)) && (__ARM_ARCH == 8)
++#if defined __has_include && __has_include(<arm_acle.h>)
++#include <arm_acle.h>
++#endif
++#endif
++
++/* Apple Silicon cache lines are double of what is commonly used by Intel, AMD
++ * and other Arm microarchitectures use.
++ * From sysctl -a on Apple M1:
++ * hw.cachelinesize: 128
++ */
++#if defined(__APPLE__) && (defined(__aarch64__) || defined(__arm64__))
++#define SSE2NEON_CACHELINE_SIZE 128
++#else
++#define SSE2NEON_CACHELINE_SIZE 64
++#endif
++
++/* Rounding functions require either Aarch64 instructions or libm fallback */
++#if !defined(__aarch64__) && !defined(_M_ARM64)
++#include <math.h>
++#endif
++
++/* On ARMv7, some registers, such as PMUSERENR and PMCCNTR, are read-only
++ * or even not accessible in user mode.
++ * To write or access to these registers in user mode,
++ * we have to perform syscall instead.
++ */
++#if (!defined(__aarch64__) && !defined(_M_ARM64))
++#include <sys/time.h>
++#endif
++
++/* "__has_builtin" can be used to query support for built-in functions
++ * provided by gcc/clang and other compilers that support it.
++ */
++#ifndef __has_builtin /* GCC prior to 10 or non-clang compilers */
++/* Compatibility with gcc <= 9 */
++#if defined(__GNUC__) && (__GNUC__ <= 9)
++#define __has_builtin(x) HAS##x
++#define HAS__builtin_popcount 1
++#define HAS__builtin_popcountll 1
++
++// __builtin_shuffle introduced in GCC 4.7.0
++#if (__GNUC__ >= 5) || ((__GNUC__ == 4) && (__GNUC_MINOR__ >= 7))
++#define HAS__builtin_shuffle 1
++#else
++#define HAS__builtin_shuffle 0
++#endif
++
++#define HAS__builtin_shufflevector 0
++#define HAS__builtin_nontemporal_store 0
++#else
++#define __has_builtin(x) 0
++#endif
++#endif
++
++/**
++ * MACRO for shuffle parameter for _mm_shuffle_ps().
++ * Argument fp3 is a digit[0123] that represents the fp from argument "b"
++ * of mm_shuffle_ps that will be placed in fp3 of result. fp2 is the same
++ * for fp2 in result. fp1 is a digit[0123] that represents the fp from
++ * argument "a" of mm_shuffle_ps that will be places in fp1 of result.
++ * fp0 is the same for fp0 of result.
++ */
++#define _MM_SHUFFLE(fp3, fp2, fp1, fp0) \
++    (((fp3) << 6) | ((fp2) << 4) | ((fp1) << 2) | ((fp0)))
++
++#if __has_builtin(__builtin_shufflevector)
++#define _sse2neon_shuffle(type, a, b, ...) \
++    __builtin_shufflevector(a, b, __VA_ARGS__)
++#elif __has_builtin(__builtin_shuffle)
++#define _sse2neon_shuffle(type, a, b, ...) \
++    __extension__({                        \
++        type tmp = {__VA_ARGS__};          \
++        __builtin_shuffle(a, b, tmp);      \
++    })
++#endif
++
++#ifdef _sse2neon_shuffle
++#define vshuffle_s16(a, b, ...) _sse2neon_shuffle(int16x4_t, a, b, __VA_ARGS__)
++#define vshuffleq_s16(a, b, ...) _sse2neon_shuffle(int16x8_t, a, b, __VA_ARGS__)
++#define vshuffle_s32(a, b, ...) _sse2neon_shuffle(int32x2_t, a, b, __VA_ARGS__)
++#define vshuffleq_s32(a, b, ...) _sse2neon_shuffle(int32x4_t, a, b, __VA_ARGS__)
++#define vshuffle_s64(a, b, ...) _sse2neon_shuffle(int64x1_t, a, b, __VA_ARGS__)
++#define vshuffleq_s64(a, b, ...) _sse2neon_shuffle(int64x2_t, a, b, __VA_ARGS__)
++#endif
++
++/* Rounding mode macros. */
++#define _MM_FROUND_TO_NEAREST_INT 0x00
++#define _MM_FROUND_TO_NEG_INF 0x01
++#define _MM_FROUND_TO_POS_INF 0x02
++#define _MM_FROUND_TO_ZERO 0x03
++#define _MM_FROUND_CUR_DIRECTION 0x04
++#define _MM_FROUND_NO_EXC 0x08
++#define _MM_FROUND_RAISE_EXC 0x00
++#define _MM_FROUND_NINT (_MM_FROUND_TO_NEAREST_INT | _MM_FROUND_RAISE_EXC)
++#define _MM_FROUND_FLOOR (_MM_FROUND_TO_NEG_INF | _MM_FROUND_RAISE_EXC)
++#define _MM_FROUND_CEIL (_MM_FROUND_TO_POS_INF | _MM_FROUND_RAISE_EXC)
++#define _MM_FROUND_TRUNC (_MM_FROUND_TO_ZERO | _MM_FROUND_RAISE_EXC)
++#define _MM_FROUND_RINT (_MM_FROUND_CUR_DIRECTION | _MM_FROUND_RAISE_EXC)
++#define _MM_FROUND_NEARBYINT (_MM_FROUND_CUR_DIRECTION | _MM_FROUND_NO_EXC)
++#define _MM_ROUND_NEAREST 0x0000
++#define _MM_ROUND_DOWN 0x2000
++#define _MM_ROUND_UP 0x4000
++#define _MM_ROUND_TOWARD_ZERO 0x6000
++/* Flush zero mode macros. */
++#define _MM_FLUSH_ZERO_MASK 0x8000
++#define _MM_FLUSH_ZERO_ON 0x8000
++#define _MM_FLUSH_ZERO_OFF 0x0000
++/* Denormals are zeros mode macros. */
++#define _MM_DENORMALS_ZERO_MASK 0x0040
++#define _MM_DENORMALS_ZERO_ON 0x0040
++#define _MM_DENORMALS_ZERO_OFF 0x0000
++
++/* indicate immediate constant argument in a given range */
++#define __constrange(a, b) const
++
++/* A few intrinsics accept traditional data types like ints or floats, but
++ * most operate on data types that are specific to SSE.
++ * If a vector type ends in d, it contains doubles, and if it does not have
++ * a suffix, it contains floats. An integer vector type can contain any type
++ * of integer, from chars to shorts to unsigned long longs.
++ */
++typedef int64x1_t __m64;
++typedef float32x4_t __m128; /* 128-bit vector containing 4 floats */
++// On ARM 32-bit architecture, the float64x2_t is not supported.
++// The data type __m128d should be represented in a different way for related
++// intrinsic conversion.
++#if defined(__aarch64__) || defined(_M_ARM64)
++typedef float64x2_t __m128d; /* 128-bit vector containing 2 doubles */
++#else
++typedef float32x4_t __m128d;
++#endif
++typedef int64x2_t __m128i; /* 128-bit vector containing integers */
++
++// __int64 is defined in the Intrinsics Guide which maps to different datatype
++// in different data model
++#if !(defined(_WIN32) || defined(_WIN64) || defined(__int64))
++#if (defined(__x86_64__) || defined(__i386__))
++#define __int64 long long
++#else
++#define __int64 int64_t
++#endif
++#endif
++
++/* type-safe casting between types */
++
++#define vreinterpretq_m128_f16(x) vreinterpretq_f32_f16(x)
++#define vreinterpretq_m128_f32(x) (x)
++#define vreinterpretq_m128_f64(x) vreinterpretq_f32_f64(x)
++
++#define vreinterpretq_m128_u8(x) vreinterpretq_f32_u8(x)
++#define vreinterpretq_m128_u16(x) vreinterpretq_f32_u16(x)
++#define vreinterpretq_m128_u32(x) vreinterpretq_f32_u32(x)
++#define vreinterpretq_m128_u64(x) vreinterpretq_f32_u64(x)
++
++#define vreinterpretq_m128_s8(x) vreinterpretq_f32_s8(x)
++#define vreinterpretq_m128_s16(x) vreinterpretq_f32_s16(x)
++#define vreinterpretq_m128_s32(x) vreinterpretq_f32_s32(x)
++#define vreinterpretq_m128_s64(x) vreinterpretq_f32_s64(x)
++
++#define vreinterpretq_f16_m128(x) vreinterpretq_f16_f32(x)
++#define vreinterpretq_f32_m128(x) (x)
++#define vreinterpretq_f64_m128(x) vreinterpretq_f64_f32(x)
++
++#define vreinterpretq_u8_m128(x) vreinterpretq_u8_f32(x)
++#define vreinterpretq_u16_m128(x) vreinterpretq_u16_f32(x)
++#define vreinterpretq_u32_m128(x) vreinterpretq_u32_f32(x)
++#define vreinterpretq_u64_m128(x) vreinterpretq_u64_f32(x)
++
++#define vreinterpretq_s8_m128(x) vreinterpretq_s8_f32(x)
++#define vreinterpretq_s16_m128(x) vreinterpretq_s16_f32(x)
++#define vreinterpretq_s32_m128(x) vreinterpretq_s32_f32(x)
++#define vreinterpretq_s64_m128(x) vreinterpretq_s64_f32(x)
++
++#define vreinterpretq_m128i_s8(x) vreinterpretq_s64_s8(x)
++#define vreinterpretq_m128i_s16(x) vreinterpretq_s64_s16(x)
++#define vreinterpretq_m128i_s32(x) vreinterpretq_s64_s32(x)
++#define vreinterpretq_m128i_s64(x) (x)
++
++#define vreinterpretq_m128i_u8(x) vreinterpretq_s64_u8(x)
++#define vreinterpretq_m128i_u16(x) vreinterpretq_s64_u16(x)
++#define vreinterpretq_m128i_u32(x) vreinterpretq_s64_u32(x)
++#define vreinterpretq_m128i_u64(x) vreinterpretq_s64_u64(x)
++
++#define vreinterpretq_f32_m128i(x) vreinterpretq_f32_s64(x)
++#define vreinterpretq_f64_m128i(x) vreinterpretq_f64_s64(x)
++
++#define vreinterpretq_s8_m128i(x) vreinterpretq_s8_s64(x)
++#define vreinterpretq_s16_m128i(x) vreinterpretq_s16_s64(x)
++#define vreinterpretq_s32_m128i(x) vreinterpretq_s32_s64(x)
++#define vreinterpretq_s64_m128i(x) (x)
++
++#define vreinterpretq_u8_m128i(x) vreinterpretq_u8_s64(x)
++#define vreinterpretq_u16_m128i(x) vreinterpretq_u16_s64(x)
++#define vreinterpretq_u32_m128i(x) vreinterpretq_u32_s64(x)
++#define vreinterpretq_u64_m128i(x) vreinterpretq_u64_s64(x)
++
++#define vreinterpret_m64_s8(x) vreinterpret_s64_s8(x)
++#define vreinterpret_m64_s16(x) vreinterpret_s64_s16(x)
++#define vreinterpret_m64_s32(x) vreinterpret_s64_s32(x)
++#define vreinterpret_m64_s64(x) (x)
++
++#define vreinterpret_m64_u8(x) vreinterpret_s64_u8(x)
++#define vreinterpret_m64_u16(x) vreinterpret_s64_u16(x)
++#define vreinterpret_m64_u32(x) vreinterpret_s64_u32(x)
++#define vreinterpret_m64_u64(x) vreinterpret_s64_u64(x)
++
++#define vreinterpret_m64_f16(x) vreinterpret_s64_f16(x)
++#define vreinterpret_m64_f32(x) vreinterpret_s64_f32(x)
++#define vreinterpret_m64_f64(x) vreinterpret_s64_f64(x)
++
++#define vreinterpret_u8_m64(x) vreinterpret_u8_s64(x)
++#define vreinterpret_u16_m64(x) vreinterpret_u16_s64(x)
++#define vreinterpret_u32_m64(x) vreinterpret_u32_s64(x)
++#define vreinterpret_u64_m64(x) vreinterpret_u64_s64(x)
++
++#define vreinterpret_s8_m64(x) vreinterpret_s8_s64(x)
++#define vreinterpret_s16_m64(x) vreinterpret_s16_s64(x)
++#define vreinterpret_s32_m64(x) vreinterpret_s32_s64(x)
++#define vreinterpret_s64_m64(x) (x)
++
++#define vreinterpret_f32_m64(x) vreinterpret_f32_s64(x)
++
++#if defined(__aarch64__) || defined(_M_ARM64)
++#define vreinterpretq_m128d_s32(x) vreinterpretq_f64_s32(x)
++#define vreinterpretq_m128d_s64(x) vreinterpretq_f64_s64(x)
++
++#define vreinterpretq_m128d_u64(x) vreinterpretq_f64_u64(x)
++
++#define vreinterpretq_m128d_f32(x) vreinterpretq_f64_f32(x)
++#define vreinterpretq_m128d_f64(x) (x)
++
++#define vreinterpretq_s64_m128d(x) vreinterpretq_s64_f64(x)
++
++#define vreinterpretq_u32_m128d(x) vreinterpretq_u32_f64(x)
++#define vreinterpretq_u64_m128d(x) vreinterpretq_u64_f64(x)
++
++#define vreinterpretq_f64_m128d(x) (x)
++#define vreinterpretq_f32_m128d(x) vreinterpretq_f32_f64(x)
++#else
++#define vreinterpretq_m128d_s32(x) vreinterpretq_f32_s32(x)
++#define vreinterpretq_m128d_s64(x) vreinterpretq_f32_s64(x)
++
++#define vreinterpretq_m128d_u32(x) vreinterpretq_f32_u32(x)
++#define vreinterpretq_m128d_u64(x) vreinterpretq_f32_u64(x)
++
++#define vreinterpretq_m128d_f32(x) (x)
++
++#define vreinterpretq_s64_m128d(x) vreinterpretq_s64_f32(x)
++
++#define vreinterpretq_u32_m128d(x) vreinterpretq_u32_f32(x)
++#define vreinterpretq_u64_m128d(x) vreinterpretq_u64_f32(x)
++
++#define vreinterpretq_f32_m128d(x) (x)
++#endif
++
++// A struct is defined in this header file called 'SIMDVec' which can be used
++// by applications which attempt to access the contents of an __m128 struct
++// directly.  It is important to note that accessing the __m128 struct directly
++// is bad coding practice by Microsoft: @see:
++// https://learn.microsoft.com/en-us/cpp/cpp/m128
++//
++// However, some legacy source code may try to access the contents of an __m128
++// struct directly so the developer can use the SIMDVec as an alias for it.  Any
++// casting must be done manually by the developer, as you cannot cast or
++// otherwise alias the base NEON data type for intrinsic operations.
++//
++// union intended to allow direct access to an __m128 variable using the names
++// that the MSVC compiler provides.  This union should really only be used when
++// trying to access the members of the vector as integer values.  GCC/clang
++// allow native access to the float members through a simple array access
++// operator (in C since 4.6, in C++ since 4.8).
++//
++// Ideally direct accesses to SIMD vectors should not be used since it can cause
++// a performance hit.  If it really is needed however, the original __m128
++// variable can be aliased with a pointer to this union and used to access
++// individual components.  The use of this union should be hidden behind a macro
++// that is used throughout the codebase to access the members instead of always
++// declaring this type of variable.
++typedef union ALIGN_STRUCT(16) SIMDVec {
++    float m128_f32[4];     // as floats - DON'T USE. Added for convenience.
++    int8_t m128_i8[16];    // as signed 8-bit integers.
++    int16_t m128_i16[8];   // as signed 16-bit integers.
++    int32_t m128_i32[4];   // as signed 32-bit integers.
++    int64_t m128_i64[2];   // as signed 64-bit integers.
++    uint8_t m128_u8[16];   // as unsigned 8-bit integers.
++    uint16_t m128_u16[8];  // as unsigned 16-bit integers.
++    uint32_t m128_u32[4];  // as unsigned 32-bit integers.
++    uint64_t m128_u64[2];  // as unsigned 64-bit integers.
++} SIMDVec;
++
++// casting using SIMDVec
++#define vreinterpretq_nth_u64_m128i(x, n) (((SIMDVec *) &x)->m128_u64[n])
++#define vreinterpretq_nth_u32_m128i(x, n) (((SIMDVec *) &x)->m128_u32[n])
++#define vreinterpretq_nth_u8_m128i(x, n) (((SIMDVec *) &x)->m128_u8[n])
++
++/* SSE macros */
++#define _MM_GET_FLUSH_ZERO_MODE _sse2neon_mm_get_flush_zero_mode
++#define _MM_SET_FLUSH_ZERO_MODE _sse2neon_mm_set_flush_zero_mode
++#define _MM_GET_DENORMALS_ZERO_MODE _sse2neon_mm_get_denormals_zero_mode
++#define _MM_SET_DENORMALS_ZERO_MODE _sse2neon_mm_set_denormals_zero_mode
++
++// Function declaration
++// SSE
++FORCE_INLINE unsigned int _MM_GET_ROUNDING_MODE(void);
++FORCE_INLINE __m128 _mm_move_ss(__m128, __m128);
++FORCE_INLINE __m128 _mm_or_ps(__m128, __m128);
++FORCE_INLINE __m128 _mm_set_ps1(float);
++FORCE_INLINE __m128 _mm_setzero_ps(void);
++// SSE2
++FORCE_INLINE __m128i _mm_and_si128(__m128i, __m128i);
++FORCE_INLINE __m128i _mm_castps_si128(__m128);
++FORCE_INLINE __m128i _mm_cmpeq_epi32(__m128i, __m128i);
++FORCE_INLINE __m128i _mm_cvtps_epi32(__m128);
++FORCE_INLINE __m128d _mm_move_sd(__m128d, __m128d);
++FORCE_INLINE __m128i _mm_or_si128(__m128i, __m128i);
++FORCE_INLINE __m128i _mm_set_epi32(int, int, int, int);
++FORCE_INLINE __m128i _mm_set_epi64x(int64_t, int64_t);
++FORCE_INLINE __m128d _mm_set_pd(double, double);
++FORCE_INLINE __m128i _mm_set1_epi32(int);
++FORCE_INLINE __m128i _mm_setzero_si128(void);
++// SSE4.1
++FORCE_INLINE __m128d _mm_ceil_pd(__m128d);
++FORCE_INLINE __m128 _mm_ceil_ps(__m128);
++FORCE_INLINE __m128d _mm_floor_pd(__m128d);
++FORCE_INLINE __m128 _mm_floor_ps(__m128);
++FORCE_INLINE __m128d _mm_round_pd(__m128d, int);
++FORCE_INLINE __m128 _mm_round_ps(__m128, int);
++// SSE4.2
++FORCE_INLINE uint32_t _mm_crc32_u8(uint32_t, uint8_t);
++
++/* Backwards compatibility for compilers with lack of specific type support */
++
++// Older gcc does not define vld1q_u8_x4 type
++#if defined(__GNUC__) && !defined(__clang__) &&                        \
++    ((__GNUC__ <= 13 && defined(__arm__)) ||                           \
++     (__GNUC__ == 10 && __GNUC_MINOR__ < 3 && defined(__aarch64__)) || \
++     (__GNUC__ <= 9 && defined(__aarch64__)))
++FORCE_INLINE uint8x16x4_t _sse2neon_vld1q_u8_x4(const uint8_t *p)
++{
++    uint8x16x4_t ret;
++    ret.val[0] = vld1q_u8(p + 0);
++    ret.val[1] = vld1q_u8(p + 16);
++    ret.val[2] = vld1q_u8(p + 32);
++    ret.val[3] = vld1q_u8(p + 48);
++    return ret;
++}
++#else
++// Wraps vld1q_u8_x4
++FORCE_INLINE uint8x16x4_t _sse2neon_vld1q_u8_x4(const uint8_t *p)
++{
++    return vld1q_u8_x4(p);
++}
++#endif
++
++#if !defined(__aarch64__) && !defined(_M_ARM64)
++/* emulate vaddv u8 variant */
++FORCE_INLINE uint8_t _sse2neon_vaddv_u8(uint8x8_t v8)
++{
++    const uint64x1_t v1 = vpaddl_u32(vpaddl_u16(vpaddl_u8(v8)));
++    return vget_lane_u8(vreinterpret_u8_u64(v1), 0);
++}
++#else
++// Wraps vaddv_u8
++FORCE_INLINE uint8_t _sse2neon_vaddv_u8(uint8x8_t v8)
++{
++    return vaddv_u8(v8);
++}
++#endif
++
++#if !defined(__aarch64__) && !defined(_M_ARM64)
++/* emulate vaddvq u8 variant */
++FORCE_INLINE uint8_t _sse2neon_vaddvq_u8(uint8x16_t a)
++{
++    uint8x8_t tmp = vpadd_u8(vget_low_u8(a), vget_high_u8(a));
++    uint8_t res = 0;
++    for (int i = 0; i < 8; ++i)
++        res += tmp[i];
++    return res;
++}
++#else
++// Wraps vaddvq_u8
++FORCE_INLINE uint8_t _sse2neon_vaddvq_u8(uint8x16_t a)
++{
++    return vaddvq_u8(a);
++}
++#endif
++
++#if !defined(__aarch64__) && !defined(_M_ARM64)
++/* emulate vaddvq u16 variant */
++FORCE_INLINE uint16_t _sse2neon_vaddvq_u16(uint16x8_t a)
++{
++    uint32x4_t m = vpaddlq_u16(a);
++    uint64x2_t n = vpaddlq_u32(m);
++    uint64x1_t o = vget_low_u64(n) + vget_high_u64(n);
++
++    return vget_lane_u32((uint32x2_t) o, 0);
++}
++#else
++// Wraps vaddvq_u16
++FORCE_INLINE uint16_t _sse2neon_vaddvq_u16(uint16x8_t a)
++{
++    return vaddvq_u16(a);
++}
++#endif
++
++/* Function Naming Conventions
++ * The naming convention of SSE intrinsics is straightforward. A generic SSE
++ * intrinsic function is given as follows:
++ *   _mm_<name>_<data_type>
++ *
++ * The parts of this format are given as follows:
++ * 1. <name> describes the operation performed by the intrinsic
++ * 2. <data_type> identifies the data type of the function's primary arguments
++ *
++ * This last part, <data_type>, is a little complicated. It identifies the
++ * content of the input values, and can be set to any of the following values:
++ * + ps - vectors contain floats (ps stands for packed single-precision)
++ * + pd - vectors contain doubles (pd stands for packed double-precision)
++ * + epi8/epi16/epi32/epi64 - vectors contain 8-bit/16-bit/32-bit/64-bit
++ *                            signed integers
++ * + epu8/epu16/epu32/epu64 - vectors contain 8-bit/16-bit/32-bit/64-bit
++ *                            unsigned integers
++ * + si128 - unspecified 128-bit vector or 256-bit vector
++ * + m128/m128i/m128d - identifies input vector types when they are different
++ *                      than the type of the returned vector
++ *
++ * For example, _mm_setzero_ps. The _mm implies that the function returns
++ * a 128-bit vector. The _ps at the end implies that the argument vectors
++ * contain floats.
++ *
++ * A complete example: Byte Shuffle - pshufb (_mm_shuffle_epi8)
++ *   // Set packed 16-bit integers. 128 bits, 8 short, per 16 bits
++ *   __m128i v_in = _mm_setr_epi16(1, 2, 3, 4, 5, 6, 7, 8);
++ *   // Set packed 8-bit integers
++ *   // 128 bits, 16 chars, per 8 bits
++ *   __m128i v_perm = _mm_setr_epi8(1, 0,  2,  3, 8, 9, 10, 11,
++ *                                  4, 5, 12, 13, 6, 7, 14, 15);
++ *   // Shuffle packed 8-bit integers
++ *   __m128i v_out = _mm_shuffle_epi8(v_in, v_perm); // pshufb
++ */
++
++/* Constants for use with _mm_prefetch. */
++enum _mm_hint {
++    _MM_HINT_NTA = 0, /* load data to L1 and L2 cache, mark it as NTA */
++    _MM_HINT_T0 = 1,  /* load data to L1 and L2 cache */
++    _MM_HINT_T1 = 2,  /* load data to L2 cache only */
++    _MM_HINT_T2 = 3,  /* load data to L2 cache only, mark it as NTA */
++};
++
++// The bit field mapping to the FPCR(floating-point control register)
++typedef struct {
++    uint16_t res0;
++    uint8_t res1 : 6;
++    uint8_t bit22 : 1;
++    uint8_t bit23 : 1;
++    uint8_t bit24 : 1;
++    uint8_t res2 : 7;
++#if defined(__aarch64__) || defined(_M_ARM64)
++    uint32_t res3;
++#endif
++} fpcr_bitfield;
++
++// Takes the upper 64 bits of a and places it in the low end of the result
++// Takes the lower 64 bits of b and places it into the high end of the result.
++FORCE_INLINE __m128 _mm_shuffle_ps_1032(__m128 a, __m128 b)
++{
++    float32x2_t a32 = vget_high_f32(vreinterpretq_f32_m128(a));
++    float32x2_t b10 = vget_low_f32(vreinterpretq_f32_m128(b));
++    return vreinterpretq_m128_f32(vcombine_f32(a32, b10));
++}
++
++// takes the lower two 32-bit values from a and swaps them and places in high
++// end of result takes the higher two 32 bit values from b and swaps them and
++// places in low end of result.
++FORCE_INLINE __m128 _mm_shuffle_ps_2301(__m128 a, __m128 b)
++{
++    float32x2_t a01 = vrev64_f32(vget_low_f32(vreinterpretq_f32_m128(a)));
++    float32x2_t b23 = vrev64_f32(vget_high_f32(vreinterpretq_f32_m128(b)));
++    return vreinterpretq_m128_f32(vcombine_f32(a01, b23));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_0321(__m128 a, __m128 b)
++{
++    float32x2_t a21 = vget_high_f32(
++        vextq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(a), 3));
++    float32x2_t b03 = vget_low_f32(
++        vextq_f32(vreinterpretq_f32_m128(b), vreinterpretq_f32_m128(b), 3));
++    return vreinterpretq_m128_f32(vcombine_f32(a21, b03));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_2103(__m128 a, __m128 b)
++{
++    float32x2_t a03 = vget_low_f32(
++        vextq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(a), 3));
++    float32x2_t b21 = vget_high_f32(
++        vextq_f32(vreinterpretq_f32_m128(b), vreinterpretq_f32_m128(b), 3));
++    return vreinterpretq_m128_f32(vcombine_f32(a03, b21));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_1010(__m128 a, __m128 b)
++{
++    float32x2_t a10 = vget_low_f32(vreinterpretq_f32_m128(a));
++    float32x2_t b10 = vget_low_f32(vreinterpretq_f32_m128(b));
++    return vreinterpretq_m128_f32(vcombine_f32(a10, b10));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_1001(__m128 a, __m128 b)
++{
++    float32x2_t a01 = vrev64_f32(vget_low_f32(vreinterpretq_f32_m128(a)));
++    float32x2_t b10 = vget_low_f32(vreinterpretq_f32_m128(b));
++    return vreinterpretq_m128_f32(vcombine_f32(a01, b10));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_0101(__m128 a, __m128 b)
++{
++    float32x2_t a01 = vrev64_f32(vget_low_f32(vreinterpretq_f32_m128(a)));
++    float32x2_t b01 = vrev64_f32(vget_low_f32(vreinterpretq_f32_m128(b)));
++    return vreinterpretq_m128_f32(vcombine_f32(a01, b01));
++}
++
++// keeps the low 64 bits of b in the low and puts the high 64 bits of a in the
++// high
++FORCE_INLINE __m128 _mm_shuffle_ps_3210(__m128 a, __m128 b)
++{
++    float32x2_t a10 = vget_low_f32(vreinterpretq_f32_m128(a));
++    float32x2_t b32 = vget_high_f32(vreinterpretq_f32_m128(b));
++    return vreinterpretq_m128_f32(vcombine_f32(a10, b32));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_0011(__m128 a, __m128 b)
++{
++    float32x2_t a11 = vdup_lane_f32(vget_low_f32(vreinterpretq_f32_m128(a)), 1);
++    float32x2_t b00 = vdup_lane_f32(vget_low_f32(vreinterpretq_f32_m128(b)), 0);
++    return vreinterpretq_m128_f32(vcombine_f32(a11, b00));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_0022(__m128 a, __m128 b)
++{
++    float32x2_t a22 =
++        vdup_lane_f32(vget_high_f32(vreinterpretq_f32_m128(a)), 0);
++    float32x2_t b00 = vdup_lane_f32(vget_low_f32(vreinterpretq_f32_m128(b)), 0);
++    return vreinterpretq_m128_f32(vcombine_f32(a22, b00));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_2200(__m128 a, __m128 b)
++{
++    float32x2_t a00 = vdup_lane_f32(vget_low_f32(vreinterpretq_f32_m128(a)), 0);
++    float32x2_t b22 =
++        vdup_lane_f32(vget_high_f32(vreinterpretq_f32_m128(b)), 0);
++    return vreinterpretq_m128_f32(vcombine_f32(a00, b22));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_3202(__m128 a, __m128 b)
++{
++    float32_t a0 = vgetq_lane_f32(vreinterpretq_f32_m128(a), 0);
++    float32x2_t a22 =
++        vdup_lane_f32(vget_high_f32(vreinterpretq_f32_m128(a)), 0);
++    float32x2_t a02 = vset_lane_f32(a0, a22, 1); /* TODO: use vzip ?*/
++    float32x2_t b32 = vget_high_f32(vreinterpretq_f32_m128(b));
++    return vreinterpretq_m128_f32(vcombine_f32(a02, b32));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_1133(__m128 a, __m128 b)
++{
++    float32x2_t a33 =
++        vdup_lane_f32(vget_high_f32(vreinterpretq_f32_m128(a)), 1);
++    float32x2_t b11 = vdup_lane_f32(vget_low_f32(vreinterpretq_f32_m128(b)), 1);
++    return vreinterpretq_m128_f32(vcombine_f32(a33, b11));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_2010(__m128 a, __m128 b)
++{
++    float32x2_t a10 = vget_low_f32(vreinterpretq_f32_m128(a));
++    float32_t b2 = vgetq_lane_f32(vreinterpretq_f32_m128(b), 2);
++    float32x2_t b00 = vdup_lane_f32(vget_low_f32(vreinterpretq_f32_m128(b)), 0);
++    float32x2_t b20 = vset_lane_f32(b2, b00, 1);
++    return vreinterpretq_m128_f32(vcombine_f32(a10, b20));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_2001(__m128 a, __m128 b)
++{
++    float32x2_t a01 = vrev64_f32(vget_low_f32(vreinterpretq_f32_m128(a)));
++    float32_t b2 = vgetq_lane_f32(b, 2);
++    float32x2_t b00 = vdup_lane_f32(vget_low_f32(vreinterpretq_f32_m128(b)), 0);
++    float32x2_t b20 = vset_lane_f32(b2, b00, 1);
++    return vreinterpretq_m128_f32(vcombine_f32(a01, b20));
++}
++
++FORCE_INLINE __m128 _mm_shuffle_ps_2032(__m128 a, __m128 b)
++{
++    float32x2_t a32 = vget_high_f32(vreinterpretq_f32_m128(a));
++    float32_t b2 = vgetq_lane_f32(b, 2);
++    float32x2_t b00 = vdup_lane_f32(vget_low_f32(vreinterpretq_f32_m128(b)), 0);
++    float32x2_t b20 = vset_lane_f32(b2, b00, 1);
++    return vreinterpretq_m128_f32(vcombine_f32(a32, b20));
++}
++
++// For MSVC, we check only if it is ARM64, as every single ARM64 processor
++// supported by WoA has crypto extensions. If this changes in the future,
++// this can be verified via the runtime-only method of:
++// IsProcessorFeaturePresent(PF_ARM_V8_CRYPTO_INSTRUCTIONS_AVAILABLE)
++#if (defined(_M_ARM64) && !defined(__clang__)) || \
++    (defined(__ARM_FEATURE_CRYPTO) &&             \
++     (defined(__aarch64__) || __has_builtin(__builtin_arm_crypto_vmullp64)))
++// Wraps vmull_p64
++FORCE_INLINE uint64x2_t _sse2neon_vmull_p64(uint64x1_t _a, uint64x1_t _b)
++{
++    poly64_t a = vget_lane_p64(vreinterpret_p64_u64(_a), 0);
++    poly64_t b = vget_lane_p64(vreinterpret_p64_u64(_b), 0);
++#if defined(_MSC_VER)
++    __n64 a1 = {a}, b1 = {b};
++    return vreinterpretq_u64_p128(vmull_p64(a1, b1));
++#else
++    return vreinterpretq_u64_p128(vmull_p64(a, b));
++#endif
++}
++#else  // ARMv7 polyfill
++// ARMv7/some A64 lacks vmull_p64, but it has vmull_p8.
++//
++// vmull_p8 calculates 8 8-bit->16-bit polynomial multiplies, but we need a
++// 64-bit->128-bit polynomial multiply.
++//
++// It needs some work and is somewhat slow, but it is still faster than all
++// known scalar methods.
++//
++// Algorithm adapted to C from
++// https://www.workofard.com/2017/07/ghash-for-low-end-cores/, which is adapted
++// from "Fast Software Polynomial Multiplication on ARM Processors Using the
++// NEON Engine" by Danilo Camara, Conrado Gouvea, Julio Lopez and Ricardo Dahab
++// (https://hal.inria.fr/hal-01506572)
++static uint64x2_t _sse2neon_vmull_p64(uint64x1_t _a, uint64x1_t _b)
++{
++    poly8x8_t a = vreinterpret_p8_u64(_a);
++    poly8x8_t b = vreinterpret_p8_u64(_b);
++
++    // Masks
++    uint8x16_t k48_32 = vcombine_u8(vcreate_u8(0x0000ffffffffffff),
++                                    vcreate_u8(0x00000000ffffffff));
++    uint8x16_t k16_00 = vcombine_u8(vcreate_u8(0x000000000000ffff),
++                                    vcreate_u8(0x0000000000000000));
++
++    // Do the multiplies, rotating with vext to get all combinations
++    uint8x16_t d = vreinterpretq_u8_p16(vmull_p8(a, b));  // D = A0 * B0
++    uint8x16_t e =
++        vreinterpretq_u8_p16(vmull_p8(a, vext_p8(b, b, 1)));  // E = A0 * B1
++    uint8x16_t f =
++        vreinterpretq_u8_p16(vmull_p8(vext_p8(a, a, 1), b));  // F = A1 * B0
++    uint8x16_t g =
++        vreinterpretq_u8_p16(vmull_p8(a, vext_p8(b, b, 2)));  // G = A0 * B2
++    uint8x16_t h =
++        vreinterpretq_u8_p16(vmull_p8(vext_p8(a, a, 2), b));  // H = A2 * B0
++    uint8x16_t i =
++        vreinterpretq_u8_p16(vmull_p8(a, vext_p8(b, b, 3)));  // I = A0 * B3
++    uint8x16_t j =
++        vreinterpretq_u8_p16(vmull_p8(vext_p8(a, a, 3), b));  // J = A3 * B0
++    uint8x16_t k =
++        vreinterpretq_u8_p16(vmull_p8(a, vext_p8(b, b, 4)));  // L = A0 * B4
++
++    // Add cross products
++    uint8x16_t l = veorq_u8(e, f);  // L = E + F
++    uint8x16_t m = veorq_u8(g, h);  // M = G + H
++    uint8x16_t n = veorq_u8(i, j);  // N = I + J
++
++    // Interleave. Using vzip1 and vzip2 prevents Clang from emitting TBL
++    // instructions.
++#if defined(__aarch64__)
++    uint8x16_t lm_p0 = vreinterpretq_u8_u64(
++        vzip1q_u64(vreinterpretq_u64_u8(l), vreinterpretq_u64_u8(m)));
++    uint8x16_t lm_p1 = vreinterpretq_u8_u64(
++        vzip2q_u64(vreinterpretq_u64_u8(l), vreinterpretq_u64_u8(m)));
++    uint8x16_t nk_p0 = vreinterpretq_u8_u64(
++        vzip1q_u64(vreinterpretq_u64_u8(n), vreinterpretq_u64_u8(k)));
++    uint8x16_t nk_p1 = vreinterpretq_u8_u64(
++        vzip2q_u64(vreinterpretq_u64_u8(n), vreinterpretq_u64_u8(k)));
++#else
++    uint8x16_t lm_p0 = vcombine_u8(vget_low_u8(l), vget_low_u8(m));
++    uint8x16_t lm_p1 = vcombine_u8(vget_high_u8(l), vget_high_u8(m));
++    uint8x16_t nk_p0 = vcombine_u8(vget_low_u8(n), vget_low_u8(k));
++    uint8x16_t nk_p1 = vcombine_u8(vget_high_u8(n), vget_high_u8(k));
++#endif
++    // t0 = (L) (P0 + P1) << 8
++    // t1 = (M) (P2 + P3) << 16
++    uint8x16_t t0t1_tmp = veorq_u8(lm_p0, lm_p1);
++    uint8x16_t t0t1_h = vandq_u8(lm_p1, k48_32);
++    uint8x16_t t0t1_l = veorq_u8(t0t1_tmp, t0t1_h);
++
++    // t2 = (N) (P4 + P5) << 24
++    // t3 = (K) (P6 + P7) << 32
++    uint8x16_t t2t3_tmp = veorq_u8(nk_p0, nk_p1);
++    uint8x16_t t2t3_h = vandq_u8(nk_p1, k16_00);
++    uint8x16_t t2t3_l = veorq_u8(t2t3_tmp, t2t3_h);
++
++    // De-interleave
++#if defined(__aarch64__)
++    uint8x16_t t0 = vreinterpretq_u8_u64(
++        vuzp1q_u64(vreinterpretq_u64_u8(t0t1_l), vreinterpretq_u64_u8(t0t1_h)));
++    uint8x16_t t1 = vreinterpretq_u8_u64(
++        vuzp2q_u64(vreinterpretq_u64_u8(t0t1_l), vreinterpretq_u64_u8(t0t1_h)));
++    uint8x16_t t2 = vreinterpretq_u8_u64(
++        vuzp1q_u64(vreinterpretq_u64_u8(t2t3_l), vreinterpretq_u64_u8(t2t3_h)));
++    uint8x16_t t3 = vreinterpretq_u8_u64(
++        vuzp2q_u64(vreinterpretq_u64_u8(t2t3_l), vreinterpretq_u64_u8(t2t3_h)));
++#else
++    uint8x16_t t1 = vcombine_u8(vget_high_u8(t0t1_l), vget_high_u8(t0t1_h));
++    uint8x16_t t0 = vcombine_u8(vget_low_u8(t0t1_l), vget_low_u8(t0t1_h));
++    uint8x16_t t3 = vcombine_u8(vget_high_u8(t2t3_l), vget_high_u8(t2t3_h));
++    uint8x16_t t2 = vcombine_u8(vget_low_u8(t2t3_l), vget_low_u8(t2t3_h));
++#endif
++    // Shift the cross products
++    uint8x16_t t0_shift = vextq_u8(t0, t0, 15);  // t0 << 8
++    uint8x16_t t1_shift = vextq_u8(t1, t1, 14);  // t1 << 16
++    uint8x16_t t2_shift = vextq_u8(t2, t2, 13);  // t2 << 24
++    uint8x16_t t3_shift = vextq_u8(t3, t3, 12);  // t3 << 32
++
++    // Accumulate the products
++    uint8x16_t cross1 = veorq_u8(t0_shift, t1_shift);
++    uint8x16_t cross2 = veorq_u8(t2_shift, t3_shift);
++    uint8x16_t mix = veorq_u8(d, cross1);
++    uint8x16_t r = veorq_u8(mix, cross2);
++    return vreinterpretq_u64_u8(r);
++}
++#endif  // ARMv7 polyfill
++
++// C equivalent:
++//   __m128i _mm_shuffle_epi32_default(__m128i a,
++//                                     __constrange(0, 255) int imm) {
++//       __m128i ret;
++//       ret[0] = a[imm        & 0x3];   ret[1] = a[(imm >> 2) & 0x3];
++//       ret[2] = a[(imm >> 4) & 0x03];  ret[3] = a[(imm >> 6) & 0x03];
++//       return ret;
++//   }
++#define _mm_shuffle_epi32_default(a, imm)                                   \
++    vreinterpretq_m128i_s32(vsetq_lane_s32(                                 \
++        vgetq_lane_s32(vreinterpretq_s32_m128i(a), ((imm) >> 6) & 0x3),     \
++        vsetq_lane_s32(                                                     \
++            vgetq_lane_s32(vreinterpretq_s32_m128i(a), ((imm) >> 4) & 0x3), \
++            vsetq_lane_s32(vgetq_lane_s32(vreinterpretq_s32_m128i(a),       \
++                                          ((imm) >> 2) & 0x3),              \
++                           vmovq_n_s32(vgetq_lane_s32(                      \
++                               vreinterpretq_s32_m128i(a), (imm) & (0x3))), \
++                           1),                                              \
++            2),                                                             \
++        3))
++
++// Takes the upper 64 bits of a and places it in the low end of the result
++// Takes the lower 64 bits of a and places it into the high end of the result.
++FORCE_INLINE __m128i _mm_shuffle_epi_1032(__m128i a)
++{
++    int32x2_t a32 = vget_high_s32(vreinterpretq_s32_m128i(a));
++    int32x2_t a10 = vget_low_s32(vreinterpretq_s32_m128i(a));
++    return vreinterpretq_m128i_s32(vcombine_s32(a32, a10));
++}
++
++// takes the lower two 32-bit values from a and swaps them and places in low end
++// of result takes the higher two 32 bit values from a and swaps them and places
++// in high end of result.
++FORCE_INLINE __m128i _mm_shuffle_epi_2301(__m128i a)
++{
++    int32x2_t a01 = vrev64_s32(vget_low_s32(vreinterpretq_s32_m128i(a)));
++    int32x2_t a23 = vrev64_s32(vget_high_s32(vreinterpretq_s32_m128i(a)));
++    return vreinterpretq_m128i_s32(vcombine_s32(a01, a23));
++}
++
++// rotates the least significant 32 bits into the most significant 32 bits, and
++// shifts the rest down
++FORCE_INLINE __m128i _mm_shuffle_epi_0321(__m128i a)
++{
++    return vreinterpretq_m128i_s32(
++        vextq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(a), 1));
++}
++
++// rotates the most significant 32 bits into the least significant 32 bits, and
++// shifts the rest up
++FORCE_INLINE __m128i _mm_shuffle_epi_2103(__m128i a)
++{
++    return vreinterpretq_m128i_s32(
++        vextq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(a), 3));
++}
++
++// gets the lower 64 bits of a, and places it in the upper 64 bits
++// gets the lower 64 bits of a and places it in the lower 64 bits
++FORCE_INLINE __m128i _mm_shuffle_epi_1010(__m128i a)
++{
++    int32x2_t a10 = vget_low_s32(vreinterpretq_s32_m128i(a));
++    return vreinterpretq_m128i_s32(vcombine_s32(a10, a10));
++}
++
++// gets the lower 64 bits of a, swaps the 0 and 1 elements, and places it in the
++// lower 64 bits gets the lower 64 bits of a, and places it in the upper 64 bits
++FORCE_INLINE __m128i _mm_shuffle_epi_1001(__m128i a)
++{
++    int32x2_t a01 = vrev64_s32(vget_low_s32(vreinterpretq_s32_m128i(a)));
++    int32x2_t a10 = vget_low_s32(vreinterpretq_s32_m128i(a));
++    return vreinterpretq_m128i_s32(vcombine_s32(a01, a10));
++}
++
++// gets the lower 64 bits of a, swaps the 0 and 1 elements and places it in the
++// upper 64 bits gets the lower 64 bits of a, swaps the 0 and 1 elements, and
++// places it in the lower 64 bits
++FORCE_INLINE __m128i _mm_shuffle_epi_0101(__m128i a)
++{
++    int32x2_t a01 = vrev64_s32(vget_low_s32(vreinterpretq_s32_m128i(a)));
++    return vreinterpretq_m128i_s32(vcombine_s32(a01, a01));
++}
++
++FORCE_INLINE __m128i _mm_shuffle_epi_2211(__m128i a)
++{
++    int32x2_t a11 = vdup_lane_s32(vget_low_s32(vreinterpretq_s32_m128i(a)), 1);
++    int32x2_t a22 = vdup_lane_s32(vget_high_s32(vreinterpretq_s32_m128i(a)), 0);
++    return vreinterpretq_m128i_s32(vcombine_s32(a11, a22));
++}
++
++FORCE_INLINE __m128i _mm_shuffle_epi_0122(__m128i a)
++{
++    int32x2_t a22 = vdup_lane_s32(vget_high_s32(vreinterpretq_s32_m128i(a)), 0);
++    int32x2_t a01 = vrev64_s32(vget_low_s32(vreinterpretq_s32_m128i(a)));
++    return vreinterpretq_m128i_s32(vcombine_s32(a22, a01));
++}
++
++FORCE_INLINE __m128i _mm_shuffle_epi_3332(__m128i a)
++{
++    int32x2_t a32 = vget_high_s32(vreinterpretq_s32_m128i(a));
++    int32x2_t a33 = vdup_lane_s32(vget_high_s32(vreinterpretq_s32_m128i(a)), 1);
++    return vreinterpretq_m128i_s32(vcombine_s32(a32, a33));
++}
++
++#if defined(__aarch64__) || defined(_M_ARM64)
++#define _mm_shuffle_epi32_splat(a, imm) \
++    vreinterpretq_m128i_s32(vdupq_laneq_s32(vreinterpretq_s32_m128i(a), (imm)))
++#else
++#define _mm_shuffle_epi32_splat(a, imm) \
++    vreinterpretq_m128i_s32(            \
++        vdupq_n_s32(vgetq_lane_s32(vreinterpretq_s32_m128i(a), (imm))))
++#endif
++
++// NEON does not support a general purpose permute intrinsic.
++// Shuffle single-precision (32-bit) floating-point elements in a using the
++// control in imm8, and store the results in dst.
++//
++// C equivalent:
++//   __m128 _mm_shuffle_ps_default(__m128 a, __m128 b,
++//                                 __constrange(0, 255) int imm) {
++//       __m128 ret;
++//       ret[0] = a[imm        & 0x3];   ret[1] = a[(imm >> 2) & 0x3];
++//       ret[2] = b[(imm >> 4) & 0x03];  ret[3] = b[(imm >> 6) & 0x03];
++//       return ret;
++//   }
++//
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_shuffle_ps
++#define _mm_shuffle_ps_default(a, b, imm)                                      \
++    vreinterpretq_m128_f32(vsetq_lane_f32(                                     \
++        vgetq_lane_f32(vreinterpretq_f32_m128(b), ((imm) >> 6) & 0x3),         \
++        vsetq_lane_f32(                                                        \
++            vgetq_lane_f32(vreinterpretq_f32_m128(b), ((imm) >> 4) & 0x3),     \
++            vsetq_lane_f32(                                                    \
++                vgetq_lane_f32(vreinterpretq_f32_m128(a), ((imm) >> 2) & 0x3), \
++                vmovq_n_f32(                                                   \
++                    vgetq_lane_f32(vreinterpretq_f32_m128(a), (imm) & (0x3))), \
++                1),                                                            \
++            2),                                                                \
++        3))
++
++// Shuffle 16-bit integers in the low 64 bits of a using the control in imm8.
++// Store the results in the low 64 bits of dst, with the high 64 bits being
++// copied from a to dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_shufflelo_epi16
++#define _mm_shufflelo_epi16_function(a, imm)                                  \
++    _sse2neon_define1(                                                        \
++        __m128i, a, int16x8_t ret = vreinterpretq_s16_m128i(_a);              \
++        int16x4_t lowBits = vget_low_s16(ret);                                \
++        ret = vsetq_lane_s16(vget_lane_s16(lowBits, (imm) & (0x3)), ret, 0);  \
++        ret = vsetq_lane_s16(vget_lane_s16(lowBits, ((imm) >> 2) & 0x3), ret, \
++                             1);                                              \
++        ret = vsetq_lane_s16(vget_lane_s16(lowBits, ((imm) >> 4) & 0x3), ret, \
++                             2);                                              \
++        ret = vsetq_lane_s16(vget_lane_s16(lowBits, ((imm) >> 6) & 0x3), ret, \
++                             3);                                              \
++        _sse2neon_return(vreinterpretq_m128i_s16(ret));)
++
++// Shuffle 16-bit integers in the high 64 bits of a using the control in imm8.
++// Store the results in the high 64 bits of dst, with the low 64 bits being
++// copied from a to dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_shufflehi_epi16
++#define _mm_shufflehi_epi16_function(a, imm)                                   \
++    _sse2neon_define1(                                                         \
++        __m128i, a, int16x8_t ret = vreinterpretq_s16_m128i(_a);               \
++        int16x4_t highBits = vget_high_s16(ret);                               \
++        ret = vsetq_lane_s16(vget_lane_s16(highBits, (imm) & (0x3)), ret, 4);  \
++        ret = vsetq_lane_s16(vget_lane_s16(highBits, ((imm) >> 2) & 0x3), ret, \
++                             5);                                               \
++        ret = vsetq_lane_s16(vget_lane_s16(highBits, ((imm) >> 4) & 0x3), ret, \
++                             6);                                               \
++        ret = vsetq_lane_s16(vget_lane_s16(highBits, ((imm) >> 6) & 0x3), ret, \
++                             7);                                               \
++        _sse2neon_return(vreinterpretq_m128i_s16(ret));)
++
++/* MMX */
++
++//_mm_empty is a no-op on arm
++FORCE_INLINE void _mm_empty(void) {}
++
++/* SSE */
++
++// Add packed single-precision (32-bit) floating-point elements in a and b, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_add_ps
++FORCE_INLINE __m128 _mm_add_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_f32(
++        vaddq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++}
++
++// Add the lower single-precision (32-bit) floating-point element in a and b,
++// store the result in the lower element of dst, and copy the upper 3 packed
++// elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_add_ss
++FORCE_INLINE __m128 _mm_add_ss(__m128 a, __m128 b)
++{
++    float32_t b0 = vgetq_lane_f32(vreinterpretq_f32_m128(b), 0);
++    float32x4_t value = vsetq_lane_f32(b0, vdupq_n_f32(0), 0);
++    // the upper values in the result must be the remnants of <a>.
++    return vreinterpretq_m128_f32(vaddq_f32(a, value));
++}
++
++// Compute the bitwise AND of packed single-precision (32-bit) floating-point
++// elements in a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_and_ps
++FORCE_INLINE __m128 _mm_and_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_s32(
++        vandq_s32(vreinterpretq_s32_m128(a), vreinterpretq_s32_m128(b)));
++}
++
++// Compute the bitwise NOT of packed single-precision (32-bit) floating-point
++// elements in a and then AND with b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_andnot_ps
++FORCE_INLINE __m128 _mm_andnot_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_s32(
++        vbicq_s32(vreinterpretq_s32_m128(b),
++                  vreinterpretq_s32_m128(a)));  // *NOTE* argument swap
++}
++
++// Average packed unsigned 16-bit integers in a and b, and store the results in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_avg_pu16
++FORCE_INLINE __m64 _mm_avg_pu16(__m64 a, __m64 b)
++{
++    return vreinterpret_m64_u16(
++        vrhadd_u16(vreinterpret_u16_m64(a), vreinterpret_u16_m64(b)));
++}
++
++// Average packed unsigned 8-bit integers in a and b, and store the results in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_avg_pu8
++FORCE_INLINE __m64 _mm_avg_pu8(__m64 a, __m64 b)
++{
++    return vreinterpret_m64_u8(
++        vrhadd_u8(vreinterpret_u8_m64(a), vreinterpret_u8_m64(b)));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b
++// for equality, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpeq_ps
++FORCE_INLINE __m128 _mm_cmpeq_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_u32(
++        vceqq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b for equality, store the result in the lower element of dst, and copy the
++// upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpeq_ss
++FORCE_INLINE __m128 _mm_cmpeq_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_cmpeq_ps(a, b));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b
++// for greater-than-or-equal, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpge_ps
++FORCE_INLINE __m128 _mm_cmpge_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_u32(
++        vcgeq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b for greater-than-or-equal, store the result in the lower element of dst,
++// and copy the upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpge_ss
++FORCE_INLINE __m128 _mm_cmpge_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_cmpge_ps(a, b));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b
++// for greater-than, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpgt_ps
++FORCE_INLINE __m128 _mm_cmpgt_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_u32(
++        vcgtq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b for greater-than, store the result in the lower element of dst, and copy
++// the upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpgt_ss
++FORCE_INLINE __m128 _mm_cmpgt_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_cmpgt_ps(a, b));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b
++// for less-than-or-equal, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmple_ps
++FORCE_INLINE __m128 _mm_cmple_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_u32(
++        vcleq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b for less-than-or-equal, store the result in the lower element of dst, and
++// copy the upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmple_ss
++FORCE_INLINE __m128 _mm_cmple_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_cmple_ps(a, b));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b
++// for less-than, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmplt_ps
++FORCE_INLINE __m128 _mm_cmplt_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_u32(
++        vcltq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b for less-than, store the result in the lower element of dst, and copy the
++// upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmplt_ss
++FORCE_INLINE __m128 _mm_cmplt_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_cmplt_ps(a, b));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b
++// for not-equal, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpneq_ps
++FORCE_INLINE __m128 _mm_cmpneq_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_u32(vmvnq_u32(
++        vceqq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b))));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b for not-equal, store the result in the lower element of dst, and copy the
++// upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpneq_ss
++FORCE_INLINE __m128 _mm_cmpneq_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_cmpneq_ps(a, b));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b
++// for not-greater-than-or-equal, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpnge_ps
++FORCE_INLINE __m128 _mm_cmpnge_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_u32(vmvnq_u32(
++        vcgeq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b))));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b for not-greater-than-or-equal, store the result in the lower element of
++// dst, and copy the upper 3 packed elements from a to the upper elements of
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpnge_ss
++FORCE_INLINE __m128 _mm_cmpnge_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_cmpnge_ps(a, b));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b
++// for not-greater-than, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpngt_ps
++FORCE_INLINE __m128 _mm_cmpngt_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_u32(vmvnq_u32(
++        vcgtq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b))));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b for not-greater-than, store the result in the lower element of dst, and
++// copy the upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpngt_ss
++FORCE_INLINE __m128 _mm_cmpngt_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_cmpngt_ps(a, b));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b
++// for not-less-than-or-equal, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpnle_ps
++FORCE_INLINE __m128 _mm_cmpnle_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_u32(vmvnq_u32(
++        vcleq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b))));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b for not-less-than-or-equal, store the result in the lower element of dst,
++// and copy the upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpnle_ss
++FORCE_INLINE __m128 _mm_cmpnle_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_cmpnle_ps(a, b));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b
++// for not-less-than, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpnlt_ps
++FORCE_INLINE __m128 _mm_cmpnlt_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_u32(vmvnq_u32(
++        vcltq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b))));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b for not-less-than, store the result in the lower element of dst, and copy
++// the upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpnlt_ss
++FORCE_INLINE __m128 _mm_cmpnlt_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_cmpnlt_ps(a, b));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b
++// to see if neither is NaN, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpord_ps
++//
++// See also:
++// http://stackoverflow.com/questions/8627331/what-does-ordered-unordered-comparison-mean
++// http://stackoverflow.com/questions/29349621/neon-isnanval-intrinsics
++FORCE_INLINE __m128 _mm_cmpord_ps(__m128 a, __m128 b)
++{
++    // Note: NEON does not have ordered compare builtin
++    // Need to compare a eq a and b eq b to check for NaN
++    // Do AND of results to get final
++    uint32x4_t ceqaa =
++        vceqq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(a));
++    uint32x4_t ceqbb =
++        vceqq_f32(vreinterpretq_f32_m128(b), vreinterpretq_f32_m128(b));
++    return vreinterpretq_m128_u32(vandq_u32(ceqaa, ceqbb));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b to see if neither is NaN, store the result in the lower element of dst, and
++// copy the upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpord_ss
++FORCE_INLINE __m128 _mm_cmpord_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_cmpord_ps(a, b));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b
++// to see if either is NaN, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpunord_ps
++FORCE_INLINE __m128 _mm_cmpunord_ps(__m128 a, __m128 b)
++{
++    uint32x4_t f32a =
++        vceqq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(a));
++    uint32x4_t f32b =
++        vceqq_f32(vreinterpretq_f32_m128(b), vreinterpretq_f32_m128(b));
++    return vreinterpretq_m128_u32(vmvnq_u32(vandq_u32(f32a, f32b)));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b to see if either is NaN, store the result in the lower element of dst, and
++// copy the upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpunord_ss
++FORCE_INLINE __m128 _mm_cmpunord_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_cmpunord_ps(a, b));
++}
++
++// Compare the lower single-precision (32-bit) floating-point element in a and b
++// for equality, and return the boolean result (0 or 1).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_comieq_ss
++FORCE_INLINE int _mm_comieq_ss(__m128 a, __m128 b)
++{
++    uint32x4_t a_eq_b =
++        vceqq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b));
++    return vgetq_lane_u32(a_eq_b, 0) & 0x1;
++}
++
++// Compare the lower single-precision (32-bit) floating-point element in a and b
++// for greater-than-or-equal, and return the boolean result (0 or 1).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_comige_ss
++FORCE_INLINE int _mm_comige_ss(__m128 a, __m128 b)
++{
++    uint32x4_t a_ge_b =
++        vcgeq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b));
++    return vgetq_lane_u32(a_ge_b, 0) & 0x1;
++}
++
++// Compare the lower single-precision (32-bit) floating-point element in a and b
++// for greater-than, and return the boolean result (0 or 1).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_comigt_ss
++FORCE_INLINE int _mm_comigt_ss(__m128 a, __m128 b)
++{
++    uint32x4_t a_gt_b =
++        vcgtq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b));
++    return vgetq_lane_u32(a_gt_b, 0) & 0x1;
++}
++
++// Compare the lower single-precision (32-bit) floating-point element in a and b
++// for less-than-or-equal, and return the boolean result (0 or 1).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_comile_ss
++FORCE_INLINE int _mm_comile_ss(__m128 a, __m128 b)
++{
++    uint32x4_t a_le_b =
++        vcleq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b));
++    return vgetq_lane_u32(a_le_b, 0) & 0x1;
++}
++
++// Compare the lower single-precision (32-bit) floating-point element in a and b
++// for less-than, and return the boolean result (0 or 1).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_comilt_ss
++FORCE_INLINE int _mm_comilt_ss(__m128 a, __m128 b)
++{
++    uint32x4_t a_lt_b =
++        vcltq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b));
++    return vgetq_lane_u32(a_lt_b, 0) & 0x1;
++}
++
++// Compare the lower single-precision (32-bit) floating-point element in a and b
++// for not-equal, and return the boolean result (0 or 1).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_comineq_ss
++FORCE_INLINE int _mm_comineq_ss(__m128 a, __m128 b)
++{
++    return !_mm_comieq_ss(a, b);
++}
++
++// Convert packed signed 32-bit integers in b to packed single-precision
++// (32-bit) floating-point elements, store the results in the lower 2 elements
++// of dst, and copy the upper 2 packed elements from a to the upper elements of
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvt_pi2ps
++FORCE_INLINE __m128 _mm_cvt_pi2ps(__m128 a, __m64 b)
++{
++    return vreinterpretq_m128_f32(
++        vcombine_f32(vcvt_f32_s32(vreinterpret_s32_m64(b)),
++                     vget_high_f32(vreinterpretq_f32_m128(a))));
++}
++
++// Convert packed single-precision (32-bit) floating-point elements in a to
++// packed 32-bit integers, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvt_ps2pi
++FORCE_INLINE __m64 _mm_cvt_ps2pi(__m128 a)
++{
++#if (defined(__aarch64__) || defined(_M_ARM64)) || \
++    defined(__ARM_FEATURE_DIRECTED_ROUNDING)
++    return vreinterpret_m64_s32(
++        vget_low_s32(vcvtnq_s32_f32(vrndiq_f32(vreinterpretq_f32_m128(a)))));
++#else
++    return vreinterpret_m64_s32(vcvt_s32_f32(vget_low_f32(
++        vreinterpretq_f32_m128(_mm_round_ps(a, _MM_FROUND_CUR_DIRECTION)))));
++#endif
++}
++
++// Convert the signed 32-bit integer b to a single-precision (32-bit)
++// floating-point element, store the result in the lower element of dst, and
++// copy the upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvt_si2ss
++FORCE_INLINE __m128 _mm_cvt_si2ss(__m128 a, int b)
++{
++    return vreinterpretq_m128_f32(
++        vsetq_lane_f32((float) b, vreinterpretq_f32_m128(a), 0));
++}
++
++// Convert the lower single-precision (32-bit) floating-point element in a to a
++// 32-bit integer, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvt_ss2si
++FORCE_INLINE int _mm_cvt_ss2si(__m128 a)
++{
++#if (defined(__aarch64__) || defined(_M_ARM64)) || \
++    defined(__ARM_FEATURE_DIRECTED_ROUNDING)
++    return vgetq_lane_s32(vcvtnq_s32_f32(vrndiq_f32(vreinterpretq_f32_m128(a))),
++                          0);
++#else
++    float32_t data = vgetq_lane_f32(
++        vreinterpretq_f32_m128(_mm_round_ps(a, _MM_FROUND_CUR_DIRECTION)), 0);
++    return (int32_t) data;
++#endif
++}
++
++// Convert packed 16-bit integers in a to packed single-precision (32-bit)
++// floating-point elements, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtpi16_ps
++FORCE_INLINE __m128 _mm_cvtpi16_ps(__m64 a)
++{
++    return vreinterpretq_m128_f32(
++        vcvtq_f32_s32(vmovl_s16(vreinterpret_s16_m64(a))));
++}
++
++// Convert packed 32-bit integers in b to packed single-precision (32-bit)
++// floating-point elements, store the results in the lower 2 elements of dst,
++// and copy the upper 2 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtpi32_ps
++FORCE_INLINE __m128 _mm_cvtpi32_ps(__m128 a, __m64 b)
++{
++    return vreinterpretq_m128_f32(
++        vcombine_f32(vcvt_f32_s32(vreinterpret_s32_m64(b)),
++                     vget_high_f32(vreinterpretq_f32_m128(a))));
++}
++
++// Convert packed signed 32-bit integers in a to packed single-precision
++// (32-bit) floating-point elements, store the results in the lower 2 elements
++// of dst, then convert the packed signed 32-bit integers in b to
++// single-precision (32-bit) floating-point element, and store the results in
++// the upper 2 elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtpi32x2_ps
++FORCE_INLINE __m128 _mm_cvtpi32x2_ps(__m64 a, __m64 b)
++{
++    return vreinterpretq_m128_f32(vcvtq_f32_s32(
++        vcombine_s32(vreinterpret_s32_m64(a), vreinterpret_s32_m64(b))));
++}
++
++// Convert the lower packed 8-bit integers in a to packed single-precision
++// (32-bit) floating-point elements, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtpi8_ps
++FORCE_INLINE __m128 _mm_cvtpi8_ps(__m64 a)
++{
++    return vreinterpretq_m128_f32(vcvtq_f32_s32(
++        vmovl_s16(vget_low_s16(vmovl_s8(vreinterpret_s8_m64(a))))));
++}
++
++// Convert packed single-precision (32-bit) floating-point elements in a to
++// packed 16-bit integers, and store the results in dst. Note: this intrinsic
++// will generate 0x7FFF, rather than 0x8000, for input values between 0x7FFF and
++// 0x7FFFFFFF.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtps_pi16
++FORCE_INLINE __m64 _mm_cvtps_pi16(__m128 a)
++{
++    return vreinterpret_m64_s16(
++        vqmovn_s32(vreinterpretq_s32_m128i(_mm_cvtps_epi32(a))));
++}
++
++// Convert packed single-precision (32-bit) floating-point elements in a to
++// packed 32-bit integers, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtps_pi32
++#define _mm_cvtps_pi32(a) _mm_cvt_ps2pi(a)
++
++// Convert packed single-precision (32-bit) floating-point elements in a to
++// packed 8-bit integers, and store the results in lower 4 elements of dst.
++// Note: this intrinsic will generate 0x7F, rather than 0x80, for input values
++// between 0x7F and 0x7FFFFFFF.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtps_pi8
++FORCE_INLINE __m64 _mm_cvtps_pi8(__m128 a)
++{
++    return vreinterpret_m64_s8(vqmovn_s16(
++        vcombine_s16(vreinterpret_s16_m64(_mm_cvtps_pi16(a)), vdup_n_s16(0))));
++}
++
++// Convert packed unsigned 16-bit integers in a to packed single-precision
++// (32-bit) floating-point elements, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtpu16_ps
++FORCE_INLINE __m128 _mm_cvtpu16_ps(__m64 a)
++{
++    return vreinterpretq_m128_f32(
++        vcvtq_f32_u32(vmovl_u16(vreinterpret_u16_m64(a))));
++}
++
++// Convert the lower packed unsigned 8-bit integers in a to packed
++// single-precision (32-bit) floating-point elements, and store the results in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtpu8_ps
++FORCE_INLINE __m128 _mm_cvtpu8_ps(__m64 a)
++{
++    return vreinterpretq_m128_f32(vcvtq_f32_u32(
++        vmovl_u16(vget_low_u16(vmovl_u8(vreinterpret_u8_m64(a))))));
++}
++
++// Convert the signed 32-bit integer b to a single-precision (32-bit)
++// floating-point element, store the result in the lower element of dst, and
++// copy the upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsi32_ss
++#define _mm_cvtsi32_ss(a, b) _mm_cvt_si2ss(a, b)
++
++// Convert the signed 64-bit integer b to a single-precision (32-bit)
++// floating-point element, store the result in the lower element of dst, and
++// copy the upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsi64_ss
++FORCE_INLINE __m128 _mm_cvtsi64_ss(__m128 a, int64_t b)
++{
++    return vreinterpretq_m128_f32(
++        vsetq_lane_f32((float) b, vreinterpretq_f32_m128(a), 0));
++}
++
++// Copy the lower single-precision (32-bit) floating-point element of a to dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtss_f32
++FORCE_INLINE float _mm_cvtss_f32(__m128 a)
++{
++    return vgetq_lane_f32(vreinterpretq_f32_m128(a), 0);
++}
++
++// Convert the lower single-precision (32-bit) floating-point element in a to a
++// 32-bit integer, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtss_si32
++#define _mm_cvtss_si32(a) _mm_cvt_ss2si(a)
++
++// Convert the lower single-precision (32-bit) floating-point element in a to a
++// 64-bit integer, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtss_si64
++FORCE_INLINE int64_t _mm_cvtss_si64(__m128 a)
++{
++#if (defined(__aarch64__) || defined(_M_ARM64)) || \
++    defined(__ARM_FEATURE_DIRECTED_ROUNDING)
++    return (int64_t) vgetq_lane_f32(vrndiq_f32(vreinterpretq_f32_m128(a)), 0);
++#else
++    float32_t data = vgetq_lane_f32(
++        vreinterpretq_f32_m128(_mm_round_ps(a, _MM_FROUND_CUR_DIRECTION)), 0);
++    return (int64_t) data;
++#endif
++}
++
++// Convert packed single-precision (32-bit) floating-point elements in a to
++// packed 32-bit integers with truncation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtt_ps2pi
++FORCE_INLINE __m64 _mm_cvtt_ps2pi(__m128 a)
++{
++    return vreinterpret_m64_s32(
++        vget_low_s32(vcvtq_s32_f32(vreinterpretq_f32_m128(a))));
++}
++
++// Convert the lower single-precision (32-bit) floating-point element in a to a
++// 32-bit integer with truncation, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtt_ss2si
++FORCE_INLINE int _mm_cvtt_ss2si(__m128 a)
++{
++    return vgetq_lane_s32(vcvtq_s32_f32(vreinterpretq_f32_m128(a)), 0);
++}
++
++// Convert packed single-precision (32-bit) floating-point elements in a to
++// packed 32-bit integers with truncation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvttps_pi32
++#define _mm_cvttps_pi32(a) _mm_cvtt_ps2pi(a)
++
++// Convert the lower single-precision (32-bit) floating-point element in a to a
++// 32-bit integer with truncation, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvttss_si32
++#define _mm_cvttss_si32(a) _mm_cvtt_ss2si(a)
++
++// Convert the lower single-precision (32-bit) floating-point element in a to a
++// 64-bit integer with truncation, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvttss_si64
++FORCE_INLINE int64_t _mm_cvttss_si64(__m128 a)
++{
++    return (int64_t) vgetq_lane_f32(vreinterpretq_f32_m128(a), 0);
++}
++
++// Divide packed single-precision (32-bit) floating-point elements in a by
++// packed elements in b, and store the results in dst.
++// Due to ARMv7-A NEON's lack of a precise division intrinsic, we implement
++// division by multiplying a by b's reciprocal before using the Newton-Raphson
++// method to approximate the results.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_div_ps
++FORCE_INLINE __m128 _mm_div_ps(__m128 a, __m128 b)
++{
++#if (defined(__aarch64__) || defined(_M_ARM64)) && !SSE2NEON_PRECISE_DIV
++    return vreinterpretq_m128_f32(
++        vdivq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++#else
++    float32x4_t recip = vrecpeq_f32(vreinterpretq_f32_m128(b));
++    recip = vmulq_f32(recip, vrecpsq_f32(recip, vreinterpretq_f32_m128(b)));
++    // Additional Netwon-Raphson iteration for accuracy
++    recip = vmulq_f32(recip, vrecpsq_f32(recip, vreinterpretq_f32_m128(b)));
++    return vreinterpretq_m128_f32(vmulq_f32(vreinterpretq_f32_m128(a), recip));
++#endif
++}
++
++// Divide the lower single-precision (32-bit) floating-point element in a by the
++// lower single-precision (32-bit) floating-point element in b, store the result
++// in the lower element of dst, and copy the upper 3 packed elements from a to
++// the upper elements of dst.
++// Warning: ARMv7-A does not produce the same result compared to Intel and not
++// IEEE-compliant.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_div_ss
++FORCE_INLINE __m128 _mm_div_ss(__m128 a, __m128 b)
++{
++    float32_t value =
++        vgetq_lane_f32(vreinterpretq_f32_m128(_mm_div_ps(a, b)), 0);
++    return vreinterpretq_m128_f32(
++        vsetq_lane_f32(value, vreinterpretq_f32_m128(a), 0));
++}
++
++// Extract a 16-bit integer from a, selected with imm8, and store the result in
++// the lower element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_extract_pi16
++#define _mm_extract_pi16(a, imm) \
++    (int32_t) vget_lane_u16(vreinterpret_u16_m64(a), (imm))
++
++// Free aligned memory that was allocated with _mm_malloc.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_free
++#if !defined(SSE2NEON_ALLOC_DEFINED)
++FORCE_INLINE void _mm_free(void *addr)
++{
++    free(addr);
++}
++#endif
++
++FORCE_INLINE uint64_t _sse2neon_get_fpcr(void)
++{
++    uint64_t value;
++#if defined(_MSC_VER)
++    value = _ReadStatusReg(ARM64_FPCR);
++#else
++    __asm__ __volatile__("mrs %0, FPCR" : "=r"(value)); /* read */
++#endif
++    return value;
++}
++
++FORCE_INLINE void _sse2neon_set_fpcr(uint64_t value)
++{
++#if defined(_MSC_VER)
++    _WriteStatusReg(ARM64_FPCR, value);
++#else
++    __asm__ __volatile__("msr FPCR, %0" ::"r"(value));  /* write */
++#endif
++}
++
++// Macro: Get the flush zero bits from the MXCSR control and status register.
++// The flush zero may contain any of the following flags: _MM_FLUSH_ZERO_ON or
++// _MM_FLUSH_ZERO_OFF
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_MM_GET_FLUSH_ZERO_MODE
++FORCE_INLINE unsigned int _sse2neon_mm_get_flush_zero_mode(void)
++{
++    union {
++        fpcr_bitfield field;
++#if defined(__aarch64__) || defined(_M_ARM64)
++        uint64_t value;
++#else
++        uint32_t value;
++#endif
++    } r;
++
++#if defined(__aarch64__) || defined(_M_ARM64)
++    r.value = _sse2neon_get_fpcr();
++#else
++    __asm__ __volatile__("vmrs %0, FPSCR" : "=r"(r.value)); /* read */
++#endif
++
++    return r.field.bit24 ? _MM_FLUSH_ZERO_ON : _MM_FLUSH_ZERO_OFF;
++}
++
++// Macro: Get the rounding mode bits from the MXCSR control and status register.
++// The rounding mode may contain any of the following flags: _MM_ROUND_NEAREST,
++// _MM_ROUND_DOWN, _MM_ROUND_UP, _MM_ROUND_TOWARD_ZERO
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_MM_GET_ROUNDING_MODE
++FORCE_INLINE unsigned int _MM_GET_ROUNDING_MODE(void)
++{
++    union {
++        fpcr_bitfield field;
++#if defined(__aarch64__) || defined(_M_ARM64)
++        uint64_t value;
++#else
++        uint32_t value;
++#endif
++    } r;
++
++#if defined(__aarch64__) || defined(_M_ARM64)
++    r.value = _sse2neon_get_fpcr();
++#else
++    __asm__ __volatile__("vmrs %0, FPSCR" : "=r"(r.value)); /* read */
++#endif
++
++    if (r.field.bit22) {
++        return r.field.bit23 ? _MM_ROUND_TOWARD_ZERO : _MM_ROUND_UP;
++    } else {
++        return r.field.bit23 ? _MM_ROUND_DOWN : _MM_ROUND_NEAREST;
++    }
++}
++
++// Copy a to dst, and insert the 16-bit integer i into dst at the location
++// specified by imm8.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_insert_pi16
++#define _mm_insert_pi16(a, b, imm) \
++    vreinterpret_m64_s16(vset_lane_s16((b), vreinterpret_s16_m64(a), (imm)))
++
++// Load 128-bits (composed of 4 packed single-precision (32-bit) floating-point
++// elements) from memory into dst. mem_addr must be aligned on a 16-byte
++// boundary or a general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_load_ps
++FORCE_INLINE __m128 _mm_load_ps(const float *p)
++{
++    return vreinterpretq_m128_f32(vld1q_f32(p));
++}
++
++// Load a single-precision (32-bit) floating-point element from memory into all
++// elements of dst.
++//
++//   dst[31:0] := MEM[mem_addr+31:mem_addr]
++//   dst[63:32] := MEM[mem_addr+31:mem_addr]
++//   dst[95:64] := MEM[mem_addr+31:mem_addr]
++//   dst[127:96] := MEM[mem_addr+31:mem_addr]
++//
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_load_ps1
++#define _mm_load_ps1 _mm_load1_ps
++
++// Load a single-precision (32-bit) floating-point element from memory into the
++// lower of dst, and zero the upper 3 elements. mem_addr does not need to be
++// aligned on any particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_load_ss
++FORCE_INLINE __m128 _mm_load_ss(const float *p)
++{
++    return vreinterpretq_m128_f32(vsetq_lane_f32(*p, vdupq_n_f32(0), 0));
++}
++
++// Load a single-precision (32-bit) floating-point element from memory into all
++// elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_load1_ps
++FORCE_INLINE __m128 _mm_load1_ps(const float *p)
++{
++    return vreinterpretq_m128_f32(vld1q_dup_f32(p));
++}
++
++// Load 2 single-precision (32-bit) floating-point elements from memory into the
++// upper 2 elements of dst, and copy the lower 2 elements from a to dst.
++// mem_addr does not need to be aligned on any particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadh_pi
++FORCE_INLINE __m128 _mm_loadh_pi(__m128 a, __m64 const *p)
++{
++    return vreinterpretq_m128_f32(
++        vcombine_f32(vget_low_f32(a), vld1_f32((const float32_t *) p)));
++}
++
++// Load 2 single-precision (32-bit) floating-point elements from memory into the
++// lower 2 elements of dst, and copy the upper 2 elements from a to dst.
++// mem_addr does not need to be aligned on any particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadl_pi
++FORCE_INLINE __m128 _mm_loadl_pi(__m128 a, __m64 const *p)
++{
++    return vreinterpretq_m128_f32(
++        vcombine_f32(vld1_f32((const float32_t *) p), vget_high_f32(a)));
++}
++
++// Load 4 single-precision (32-bit) floating-point elements from memory into dst
++// in reverse order. mem_addr must be aligned on a 16-byte boundary or a
++// general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadr_ps
++FORCE_INLINE __m128 _mm_loadr_ps(const float *p)
++{
++    float32x4_t v = vrev64q_f32(vld1q_f32(p));
++    return vreinterpretq_m128_f32(vextq_f32(v, v, 2));
++}
++
++// Load 128-bits (composed of 4 packed single-precision (32-bit) floating-point
++// elements) from memory into dst. mem_addr does not need to be aligned on any
++// particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadu_ps
++FORCE_INLINE __m128 _mm_loadu_ps(const float *p)
++{
++    // for neon, alignment doesn't matter, so _mm_load_ps and _mm_loadu_ps are
++    // equivalent for neon
++    return vreinterpretq_m128_f32(vld1q_f32(p));
++}
++
++// Load unaligned 16-bit integer from memory into the first element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadu_si16
++FORCE_INLINE __m128i _mm_loadu_si16(const void *p)
++{
++    return vreinterpretq_m128i_s16(
++        vsetq_lane_s16(*(const int16_t *) p, vdupq_n_s16(0), 0));
++}
++
++// Load unaligned 64-bit integer from memory into the first element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadu_si64
++FORCE_INLINE __m128i _mm_loadu_si64(const void *p)
++{
++    return vreinterpretq_m128i_s64(
++        vcombine_s64(vld1_s64((const int64_t *) p), vdup_n_s64(0)));
++}
++
++// Allocate size bytes of memory, aligned to the alignment specified in align,
++// and return a pointer to the allocated memory. _mm_free should be used to free
++// memory that is allocated with _mm_malloc.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_malloc
++#if !defined(SSE2NEON_ALLOC_DEFINED)
++FORCE_INLINE void *_mm_malloc(size_t size, size_t align)
++{
++    void *ptr;
++    if (align == 1)
++        return malloc(size);
++    if (align == 2 || (sizeof(void *) == 8 && align == 4))
++        align = sizeof(void *);
++    if (!posix_memalign(&ptr, align, size))
++        return ptr;
++    return NULL;
++}
++#endif
++
++// Conditionally store 8-bit integer elements from a into memory using mask
++// (elements are not stored when the highest bit is not set in the corresponding
++// element) and a non-temporal memory hint.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_maskmove_si64
++FORCE_INLINE void _mm_maskmove_si64(__m64 a, __m64 mask, char *mem_addr)
++{
++    int8x8_t shr_mask = vshr_n_s8(vreinterpret_s8_m64(mask), 7);
++    __m128 b = _mm_load_ps((const float *) mem_addr);
++    int8x8_t masked =
++        vbsl_s8(vreinterpret_u8_s8(shr_mask), vreinterpret_s8_m64(a),
++                vreinterpret_s8_u64(vget_low_u64(vreinterpretq_u64_m128(b))));
++    vst1_s8((int8_t *) mem_addr, masked);
++}
++
++// Conditionally store 8-bit integer elements from a into memory using mask
++// (elements are not stored when the highest bit is not set in the corresponding
++// element) and a non-temporal memory hint.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_m_maskmovq
++#define _m_maskmovq(a, mask, mem_addr) _mm_maskmove_si64(a, mask, mem_addr)
++
++// Compare packed signed 16-bit integers in a and b, and store packed maximum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_pi16
++FORCE_INLINE __m64 _mm_max_pi16(__m64 a, __m64 b)
++{
++    return vreinterpret_m64_s16(
++        vmax_s16(vreinterpret_s16_m64(a), vreinterpret_s16_m64(b)));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b,
++// and store packed maximum values in dst. dst does not follow the IEEE Standard
++// for Floating-Point Arithmetic (IEEE 754) maximum value when inputs are NaN or
++// signed-zero values.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_ps
++FORCE_INLINE __m128 _mm_max_ps(__m128 a, __m128 b)
++{
++#if SSE2NEON_PRECISE_MINMAX
++    float32x4_t _a = vreinterpretq_f32_m128(a);
++    float32x4_t _b = vreinterpretq_f32_m128(b);
++    return vreinterpretq_m128_f32(vbslq_f32(vcgtq_f32(_a, _b), _a, _b));
++#else
++    return vreinterpretq_m128_f32(
++        vmaxq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++#endif
++}
++
++// Compare packed unsigned 8-bit integers in a and b, and store packed maximum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_pu8
++FORCE_INLINE __m64 _mm_max_pu8(__m64 a, __m64 b)
++{
++    return vreinterpret_m64_u8(
++        vmax_u8(vreinterpret_u8_m64(a), vreinterpret_u8_m64(b)));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b, store the maximum value in the lower element of dst, and copy the upper 3
++// packed elements from a to the upper element of dst. dst does not follow the
++// IEEE Standard for Floating-Point Arithmetic (IEEE 754) maximum value when
++// inputs are NaN or signed-zero values.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_ss
++FORCE_INLINE __m128 _mm_max_ss(__m128 a, __m128 b)
++{
++    float32_t value = vgetq_lane_f32(_mm_max_ps(a, b), 0);
++    return vreinterpretq_m128_f32(
++        vsetq_lane_f32(value, vreinterpretq_f32_m128(a), 0));
++}
++
++// Compare packed signed 16-bit integers in a and b, and store packed minimum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_min_pi16
++FORCE_INLINE __m64 _mm_min_pi16(__m64 a, __m64 b)
++{
++    return vreinterpret_m64_s16(
++        vmin_s16(vreinterpret_s16_m64(a), vreinterpret_s16_m64(b)));
++}
++
++// Compare packed single-precision (32-bit) floating-point elements in a and b,
++// and store packed minimum values in dst. dst does not follow the IEEE Standard
++// for Floating-Point Arithmetic (IEEE 754) minimum value when inputs are NaN or
++// signed-zero values.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_min_ps
++FORCE_INLINE __m128 _mm_min_ps(__m128 a, __m128 b)
++{
++#if SSE2NEON_PRECISE_MINMAX
++    float32x4_t _a = vreinterpretq_f32_m128(a);
++    float32x4_t _b = vreinterpretq_f32_m128(b);
++    return vreinterpretq_m128_f32(vbslq_f32(vcltq_f32(_a, _b), _a, _b));
++#else
++    return vreinterpretq_m128_f32(
++        vminq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++#endif
++}
++
++// Compare packed unsigned 8-bit integers in a and b, and store packed minimum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_min_pu8
++FORCE_INLINE __m64 _mm_min_pu8(__m64 a, __m64 b)
++{
++    return vreinterpret_m64_u8(
++        vmin_u8(vreinterpret_u8_m64(a), vreinterpret_u8_m64(b)));
++}
++
++// Compare the lower single-precision (32-bit) floating-point elements in a and
++// b, store the minimum value in the lower element of dst, and copy the upper 3
++// packed elements from a to the upper element of dst. dst does not follow the
++// IEEE Standard for Floating-Point Arithmetic (IEEE 754) minimum value when
++// inputs are NaN or signed-zero values.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_min_ss
++FORCE_INLINE __m128 _mm_min_ss(__m128 a, __m128 b)
++{
++    float32_t value = vgetq_lane_f32(_mm_min_ps(a, b), 0);
++    return vreinterpretq_m128_f32(
++        vsetq_lane_f32(value, vreinterpretq_f32_m128(a), 0));
++}
++
++// Move the lower single-precision (32-bit) floating-point element from b to the
++// lower element of dst, and copy the upper 3 packed elements from a to the
++// upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_move_ss
++FORCE_INLINE __m128 _mm_move_ss(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_f32(
++        vsetq_lane_f32(vgetq_lane_f32(vreinterpretq_f32_m128(b), 0),
++                       vreinterpretq_f32_m128(a), 0));
++}
++
++// Move the upper 2 single-precision (32-bit) floating-point elements from b to
++// the lower 2 elements of dst, and copy the upper 2 elements from a to the
++// upper 2 elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_movehl_ps
++FORCE_INLINE __m128 _mm_movehl_ps(__m128 a, __m128 b)
++{
++#if defined(aarch64__)
++    return vreinterpretq_m128_u64(
++        vzip2q_u64(vreinterpretq_u64_m128(b), vreinterpretq_u64_m128(a)));
++#else
++    float32x2_t a32 = vget_high_f32(vreinterpretq_f32_m128(a));
++    float32x2_t b32 = vget_high_f32(vreinterpretq_f32_m128(b));
++    return vreinterpretq_m128_f32(vcombine_f32(b32, a32));
++#endif
++}
++
++// Move the lower 2 single-precision (32-bit) floating-point elements from b to
++// the upper 2 elements of dst, and copy the lower 2 elements from a to the
++// lower 2 elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_movelh_ps
++FORCE_INLINE __m128 _mm_movelh_ps(__m128 __A, __m128 __B)
++{
++    float32x2_t a10 = vget_low_f32(vreinterpretq_f32_m128(__A));
++    float32x2_t b10 = vget_low_f32(vreinterpretq_f32_m128(__B));
++    return vreinterpretq_m128_f32(vcombine_f32(a10, b10));
++}
++
++// Create mask from the most significant bit of each 8-bit element in a, and
++// store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_movemask_pi8
++FORCE_INLINE int _mm_movemask_pi8(__m64 a)
++{
++    uint8x8_t input = vreinterpret_u8_m64(a);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    static const int8_t shift[8] = {0, 1, 2, 3, 4, 5, 6, 7};
++    uint8x8_t tmp = vshr_n_u8(input, 7);
++    return vaddv_u8(vshl_u8(tmp, vld1_s8(shift)));
++#else
++    // Refer the implementation of `_mm_movemask_epi8`
++    uint16x4_t high_bits = vreinterpret_u16_u8(vshr_n_u8(input, 7));
++    uint32x2_t paired16 =
++        vreinterpret_u32_u16(vsra_n_u16(high_bits, high_bits, 7));
++    uint8x8_t paired32 =
++        vreinterpret_u8_u32(vsra_n_u32(paired16, paired16, 14));
++    return vget_lane_u8(paired32, 0) | ((int) vget_lane_u8(paired32, 4) << 4);
++#endif
++}
++
++// Set each bit of mask dst based on the most significant bit of the
++// corresponding packed single-precision (32-bit) floating-point element in a.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_movemask_ps
++FORCE_INLINE int _mm_movemask_ps(__m128 a)
++{
++    uint32x4_t input = vreinterpretq_u32_m128(a);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    static const int32_t shift[4] = {0, 1, 2, 3};
++    uint32x4_t tmp = vshrq_n_u32(input, 31);
++    return vaddvq_u32(vshlq_u32(tmp, vld1q_s32(shift)));
++#else
++    // Uses the exact same method as _mm_movemask_epi8, see that for details.
++    // Shift out everything but the sign bits with a 32-bit unsigned shift
++    // right.
++    uint64x2_t high_bits = vreinterpretq_u64_u32(vshrq_n_u32(input, 31));
++    // Merge the two pairs together with a 64-bit unsigned shift right + add.
++    uint8x16_t paired =
++        vreinterpretq_u8_u64(vsraq_n_u64(high_bits, high_bits, 31));
++    // Extract the result.
++    return vgetq_lane_u8(paired, 0) | (vgetq_lane_u8(paired, 8) << 2);
++#endif
++}
++
++// Multiply packed single-precision (32-bit) floating-point elements in a and b,
++// and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mul_ps
++FORCE_INLINE __m128 _mm_mul_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_f32(
++        vmulq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++}
++
++// Multiply the lower single-precision (32-bit) floating-point element in a and
++// b, store the result in the lower element of dst, and copy the upper 3 packed
++// elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mul_ss
++FORCE_INLINE __m128 _mm_mul_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_mul_ps(a, b));
++}
++
++// Multiply the packed unsigned 16-bit integers in a and b, producing
++// intermediate 32-bit integers, and store the high 16 bits of the intermediate
++// integers in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mulhi_pu16
++FORCE_INLINE __m64 _mm_mulhi_pu16(__m64 a, __m64 b)
++{
++    return vreinterpret_m64_u16(vshrn_n_u32(
++        vmull_u16(vreinterpret_u16_m64(a), vreinterpret_u16_m64(b)), 16));
++}
++
++// Compute the bitwise OR of packed single-precision (32-bit) floating-point
++// elements in a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_or_ps
++FORCE_INLINE __m128 _mm_or_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_s32(
++        vorrq_s32(vreinterpretq_s32_m128(a), vreinterpretq_s32_m128(b)));
++}
++
++// Average packed unsigned 8-bit integers in a and b, and store the results in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_m_pavgb
++#define _m_pavgb(a, b) _mm_avg_pu8(a, b)
++
++// Average packed unsigned 16-bit integers in a and b, and store the results in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_m_pavgw
++#define _m_pavgw(a, b) _mm_avg_pu16(a, b)
++
++// Extract a 16-bit integer from a, selected with imm8, and store the result in
++// the lower element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_m_pextrw
++#define _m_pextrw(a, imm) _mm_extract_pi16(a, imm)
++
++// Copy a to dst, and insert the 16-bit integer i into dst at the location
++// specified by imm8.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=m_pinsrw
++#define _m_pinsrw(a, i, imm) _mm_insert_pi16(a, i, imm)
++
++// Compare packed signed 16-bit integers in a and b, and store packed maximum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_m_pmaxsw
++#define _m_pmaxsw(a, b) _mm_max_pi16(a, b)
++
++// Compare packed unsigned 8-bit integers in a and b, and store packed maximum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_m_pmaxub
++#define _m_pmaxub(a, b) _mm_max_pu8(a, b)
++
++// Compare packed signed 16-bit integers in a and b, and store packed minimum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_m_pminsw
++#define _m_pminsw(a, b) _mm_min_pi16(a, b)
++
++// Compare packed unsigned 8-bit integers in a and b, and store packed minimum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_m_pminub
++#define _m_pminub(a, b) _mm_min_pu8(a, b)
++
++// Create mask from the most significant bit of each 8-bit element in a, and
++// store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_m_pmovmskb
++#define _m_pmovmskb(a) _mm_movemask_pi8(a)
++
++// Multiply the packed unsigned 16-bit integers in a and b, producing
++// intermediate 32-bit integers, and store the high 16 bits of the intermediate
++// integers in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_m_pmulhuw
++#define _m_pmulhuw(a, b) _mm_mulhi_pu16(a, b)
++
++// Fetch the line of data from memory that contains address p to a location in
++// the cache hierarchy specified by the locality hint i.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_prefetch
++FORCE_INLINE void _mm_prefetch(char const *p, int i)
++{
++    (void) i;
++#if defined(_MSC_VER)
++    switch (i) {
++    case _MM_HINT_NTA:
++        __prefetch2(p, 1);
++        break;
++    case _MM_HINT_T0:
++        __prefetch2(p, 0);
++        break;
++    case _MM_HINT_T1:
++        __prefetch2(p, 2);
++        break;
++    case _MM_HINT_T2:
++        __prefetch2(p, 4);
++        break;
++    }
++#else
++    switch (i) {
++    case _MM_HINT_NTA:
++        __builtin_prefetch(p, 0, 0);
++        break;
++    case _MM_HINT_T0:
++        __builtin_prefetch(p, 0, 3);
++        break;
++    case _MM_HINT_T1:
++        __builtin_prefetch(p, 0, 2);
++        break;
++    case _MM_HINT_T2:
++        __builtin_prefetch(p, 0, 1);
++        break;
++    }
++#endif
++}
++
++// Compute the absolute differences of packed unsigned 8-bit integers in a and
++// b, then horizontally sum each consecutive 8 differences to produce four
++// unsigned 16-bit integers, and pack these unsigned 16-bit integers in the low
++// 16 bits of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=m_psadbw
++#define _m_psadbw(a, b) _mm_sad_pu8(a, b)
++
++// Shuffle 16-bit integers in a using the control in imm8, and store the results
++// in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_m_pshufw
++#define _m_pshufw(a, imm) _mm_shuffle_pi16(a, imm)
++
++// Compute the approximate reciprocal of packed single-precision (32-bit)
++// floating-point elements in a, and store the results in dst. The maximum
++// relative error for this approximation is less than 1.5*2^-12.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_rcp_ps
++FORCE_INLINE __m128 _mm_rcp_ps(__m128 in)
++{
++    float32x4_t recip = vrecpeq_f32(vreinterpretq_f32_m128(in));
++    recip = vmulq_f32(recip, vrecpsq_f32(recip, vreinterpretq_f32_m128(in)));
++#if SSE2NEON_PRECISE_DIV
++    // Additional Netwon-Raphson iteration for accuracy
++    recip = vmulq_f32(recip, vrecpsq_f32(recip, vreinterpretq_f32_m128(in)));
++#endif
++    return vreinterpretq_m128_f32(recip);
++}
++
++// Compute the approximate reciprocal of the lower single-precision (32-bit)
++// floating-point element in a, store the result in the lower element of dst,
++// and copy the upper 3 packed elements from a to the upper elements of dst. The
++// maximum relative error for this approximation is less than 1.5*2^-12.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_rcp_ss
++FORCE_INLINE __m128 _mm_rcp_ss(__m128 a)
++{
++    return _mm_move_ss(a, _mm_rcp_ps(a));
++}
++
++// Compute the approximate reciprocal square root of packed single-precision
++// (32-bit) floating-point elements in a, and store the results in dst. The
++// maximum relative error for this approximation is less than 1.5*2^-12.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_rsqrt_ps
++FORCE_INLINE __m128 _mm_rsqrt_ps(__m128 in)
++{
++    float32x4_t out = vrsqrteq_f32(vreinterpretq_f32_m128(in));
++
++    // Generate masks for detecting whether input has any 0.0f/-0.0f
++    // (which becomes positive/negative infinity by IEEE-754 arithmetic rules).
++    const uint32x4_t pos_inf = vdupq_n_u32(0x7F800000);
++    const uint32x4_t neg_inf = vdupq_n_u32(0xFF800000);
++    const uint32x4_t has_pos_zero =
++        vceqq_u32(pos_inf, vreinterpretq_u32_f32(out));
++    const uint32x4_t has_neg_zero =
++        vceqq_u32(neg_inf, vreinterpretq_u32_f32(out));
++
++    out = vmulq_f32(
++        out, vrsqrtsq_f32(vmulq_f32(vreinterpretq_f32_m128(in), out), out));
++#if SSE2NEON_PRECISE_SQRT
++    // Additional Netwon-Raphson iteration for accuracy
++    out = vmulq_f32(
++        out, vrsqrtsq_f32(vmulq_f32(vreinterpretq_f32_m128(in), out), out));
++#endif
++
++    // Set output vector element to infinity/negative-infinity if
++    // the corresponding input vector element is 0.0f/-0.0f.
++    out = vbslq_f32(has_pos_zero, (float32x4_t) pos_inf, out);
++    out = vbslq_f32(has_neg_zero, (float32x4_t) neg_inf, out);
++
++    return vreinterpretq_m128_f32(out);
++}
++
++// Compute the approximate reciprocal square root of the lower single-precision
++// (32-bit) floating-point element in a, store the result in the lower element
++// of dst, and copy the upper 3 packed elements from a to the upper elements of
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_rsqrt_ss
++FORCE_INLINE __m128 _mm_rsqrt_ss(__m128 in)
++{
++    return vsetq_lane_f32(vgetq_lane_f32(_mm_rsqrt_ps(in), 0), in, 0);
++}
++
++// Compute the absolute differences of packed unsigned 8-bit integers in a and
++// b, then horizontally sum each consecutive 8 differences to produce four
++// unsigned 16-bit integers, and pack these unsigned 16-bit integers in the low
++// 16 bits of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sad_pu8
++FORCE_INLINE __m64 _mm_sad_pu8(__m64 a, __m64 b)
++{
++    uint64x1_t t = vpaddl_u32(vpaddl_u16(
++        vpaddl_u8(vabd_u8(vreinterpret_u8_m64(a), vreinterpret_u8_m64(b)))));
++    return vreinterpret_m64_u16(
++        vset_lane_u16((int) vget_lane_u64(t, 0), vdup_n_u16(0), 0));
++}
++
++// Macro: Set the flush zero bits of the MXCSR control and status register to
++// the value in unsigned 32-bit integer a. The flush zero may contain any of the
++// following flags: _MM_FLUSH_ZERO_ON or _MM_FLUSH_ZERO_OFF
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_MM_SET_FLUSH_ZERO_MODE
++FORCE_INLINE void _sse2neon_mm_set_flush_zero_mode(unsigned int flag)
++{
++    // AArch32 Advanced SIMD arithmetic always uses the Flush-to-zero setting,
++    // regardless of the value of the FZ bit.
++    union {
++        fpcr_bitfield field;
++#if defined(__aarch64__) || defined(_M_ARM64)
++        uint64_t value;
++#else
++        uint32_t value;
++#endif
++    } r;
++
++#if defined(__aarch64__) || defined(_M_ARM64)
++    r.value = _sse2neon_get_fpcr();
++#else
++    __asm__ __volatile__("vmrs %0, FPSCR" : "=r"(r.value)); /* read */
++#endif
++
++    r.field.bit24 = (flag & _MM_FLUSH_ZERO_MASK) == _MM_FLUSH_ZERO_ON;
++
++#if defined(__aarch64__) || defined(_M_ARM64)
++    _sse2neon_set_fpcr(r.value);
++#else
++    __asm__ __volatile__("vmsr FPSCR, %0" ::"r"(r));        /* write */
++#endif
++}
++
++// Set packed single-precision (32-bit) floating-point elements in dst with the
++// supplied values.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set_ps
++FORCE_INLINE __m128 _mm_set_ps(float w, float z, float y, float x)
++{
++    float ALIGN_STRUCT(16) data[4] = {x, y, z, w};
++    return vreinterpretq_m128_f32(vld1q_f32(data));
++}
++
++// Broadcast single-precision (32-bit) floating-point value a to all elements of
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set_ps1
++FORCE_INLINE __m128 _mm_set_ps1(float _w)
++{
++    return vreinterpretq_m128_f32(vdupq_n_f32(_w));
++}
++
++// Macro: Set the rounding mode bits of the MXCSR control and status register to
++// the value in unsigned 32-bit integer a. The rounding mode may contain any of
++// the following flags: _MM_ROUND_NEAREST, _MM_ROUND_DOWN, _MM_ROUND_UP,
++// _MM_ROUND_TOWARD_ZERO
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_MM_SET_ROUNDING_MODE
++FORCE_INLINE void _MM_SET_ROUNDING_MODE(int rounding)
++{
++    union {
++        fpcr_bitfield field;
++#if defined(__aarch64__) || defined(_M_ARM64)
++        uint64_t value;
++#else
++        uint32_t value;
++#endif
++    } r;
++
++#if defined(__aarch64__) || defined(_M_ARM64)
++    r.value = _sse2neon_get_fpcr();
++#else
++    __asm__ __volatile__("vmrs %0, FPSCR" : "=r"(r.value)); /* read */
++#endif
++
++    switch (rounding) {
++    case _MM_ROUND_TOWARD_ZERO:
++        r.field.bit22 = 1;
++        r.field.bit23 = 1;
++        break;
++    case _MM_ROUND_DOWN:
++        r.field.bit22 = 0;
++        r.field.bit23 = 1;
++        break;
++    case _MM_ROUND_UP:
++        r.field.bit22 = 1;
++        r.field.bit23 = 0;
++        break;
++    default:  //_MM_ROUND_NEAREST
++        r.field.bit22 = 0;
++        r.field.bit23 = 0;
++    }
++
++#if defined(__aarch64__) || defined(_M_ARM64)
++    _sse2neon_set_fpcr(r.value);
++#else
++    __asm__ __volatile__("vmsr FPSCR, %0" ::"r"(r));        /* write */
++#endif
++}
++
++// Copy single-precision (32-bit) floating-point element a to the lower element
++// of dst, and zero the upper 3 elements.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set_ss
++FORCE_INLINE __m128 _mm_set_ss(float a)
++{
++    return vreinterpretq_m128_f32(vsetq_lane_f32(a, vdupq_n_f32(0), 0));
++}
++
++// Broadcast single-precision (32-bit) floating-point value a to all elements of
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set1_ps
++FORCE_INLINE __m128 _mm_set1_ps(float _w)
++{
++    return vreinterpretq_m128_f32(vdupq_n_f32(_w));
++}
++
++// Set the MXCSR control and status register with the value in unsigned 32-bit
++// integer a.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_setcsr
++// FIXME: _mm_setcsr() implementation supports changing the rounding mode only.
++FORCE_INLINE void _mm_setcsr(unsigned int a)
++{
++    _MM_SET_ROUNDING_MODE(a);
++}
++
++// Get the unsigned 32-bit value of the MXCSR control and status register.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_getcsr
++// FIXME: _mm_getcsr() implementation supports reading the rounding mode only.
++FORCE_INLINE unsigned int _mm_getcsr(void)
++{
++    return _MM_GET_ROUNDING_MODE();
++}
++
++// Set packed single-precision (32-bit) floating-point elements in dst with the
++// supplied values in reverse order.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_setr_ps
++FORCE_INLINE __m128 _mm_setr_ps(float w, float z, float y, float x)
++{
++    float ALIGN_STRUCT(16) data[4] = {w, z, y, x};
++    return vreinterpretq_m128_f32(vld1q_f32(data));
++}
++
++// Return vector of type __m128 with all elements set to zero.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_setzero_ps
++FORCE_INLINE __m128 _mm_setzero_ps(void)
++{
++    return vreinterpretq_m128_f32(vdupq_n_f32(0));
++}
++
++// Shuffle 16-bit integers in a using the control in imm8, and store the results
++// in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_shuffle_pi16
++#ifdef _sse2neon_shuffle
++#define _mm_shuffle_pi16(a, imm)                                       \
++    vreinterpret_m64_s16(vshuffle_s16(                                 \
++        vreinterpret_s16_m64(a), vreinterpret_s16_m64(a), (imm & 0x3), \
++        ((imm >> 2) & 0x3), ((imm >> 4) & 0x3), ((imm >> 6) & 0x3)))
++#else
++#define _mm_shuffle_pi16(a, imm)                                              \
++    _sse2neon_define1(                                                        \
++        __m64, a, int16x4_t ret;                                              \
++        ret = vmov_n_s16(                                                     \
++            vget_lane_s16(vreinterpret_s16_m64(_a), (imm) & (0x3)));          \
++        ret = vset_lane_s16(                                                  \
++            vget_lane_s16(vreinterpret_s16_m64(_a), ((imm) >> 2) & 0x3), ret, \
++            1);                                                               \
++        ret = vset_lane_s16(                                                  \
++            vget_lane_s16(vreinterpret_s16_m64(_a), ((imm) >> 4) & 0x3), ret, \
++            2);                                                               \
++        ret = vset_lane_s16(                                                  \
++            vget_lane_s16(vreinterpret_s16_m64(_a), ((imm) >> 6) & 0x3), ret, \
++            3);                                                               \
++        _sse2neon_return(vreinterpret_m64_s16(ret));)
++#endif
++
++// Perform a serializing operation on all store-to-memory instructions that were
++// issued prior to this instruction. Guarantees that every store instruction
++// that precedes, in program order, is globally visible before any store
++// instruction which follows the fence in program order.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sfence
++FORCE_INLINE void _mm_sfence(void)
++{
++    _sse2neon_smp_mb();
++}
++
++// Perform a serializing operation on all load-from-memory and store-to-memory
++// instructions that were issued prior to this instruction. Guarantees that
++// every memory access that precedes, in program order, the memory fence
++// instruction is globally visible before any memory instruction which follows
++// the fence in program order.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mfence
++FORCE_INLINE void _mm_mfence(void)
++{
++    _sse2neon_smp_mb();
++}
++
++// Perform a serializing operation on all load-from-memory instructions that
++// were issued prior to this instruction. Guarantees that every load instruction
++// that precedes, in program order, is globally visible before any load
++// instruction which follows the fence in program order.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_lfence
++FORCE_INLINE void _mm_lfence(void)
++{
++    _sse2neon_smp_mb();
++}
++
++// FORCE_INLINE __m128 _mm_shuffle_ps(__m128 a, __m128 b, __constrange(0,255)
++// int imm)
++#ifdef _sse2neon_shuffle
++#define _mm_shuffle_ps(a, b, imm)                                              \
++    __extension__({                                                            \
++        float32x4_t _input1 = vreinterpretq_f32_m128(a);                       \
++        float32x4_t _input2 = vreinterpretq_f32_m128(b);                       \
++        float32x4_t _shuf =                                                    \
++            vshuffleq_s32(_input1, _input2, (imm) & (0x3), ((imm) >> 2) & 0x3, \
++                          (((imm) >> 4) & 0x3) + 4, (((imm) >> 6) & 0x3) + 4); \
++        vreinterpretq_m128_f32(_shuf);                                         \
++    })
++#else  // generic
++#define _mm_shuffle_ps(a, b, imm)                            \
++    _sse2neon_define2(                                       \
++        __m128, a, b, __m128 ret; switch (imm) {             \
++            case _MM_SHUFFLE(1, 0, 3, 2):                    \
++                ret = _mm_shuffle_ps_1032(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(2, 3, 0, 1):                    \
++                ret = _mm_shuffle_ps_2301(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(0, 3, 2, 1):                    \
++                ret = _mm_shuffle_ps_0321(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(2, 1, 0, 3):                    \
++                ret = _mm_shuffle_ps_2103(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(1, 0, 1, 0):                    \
++                ret = _mm_movelh_ps(_a, _b);                 \
++                break;                                       \
++            case _MM_SHUFFLE(1, 0, 0, 1):                    \
++                ret = _mm_shuffle_ps_1001(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(0, 1, 0, 1):                    \
++                ret = _mm_shuffle_ps_0101(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(3, 2, 1, 0):                    \
++                ret = _mm_shuffle_ps_3210(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(0, 0, 1, 1):                    \
++                ret = _mm_shuffle_ps_0011(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(0, 0, 2, 2):                    \
++                ret = _mm_shuffle_ps_0022(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(2, 2, 0, 0):                    \
++                ret = _mm_shuffle_ps_2200(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(3, 2, 0, 2):                    \
++                ret = _mm_shuffle_ps_3202(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(3, 2, 3, 2):                    \
++                ret = _mm_movehl_ps(_b, _a);                 \
++                break;                                       \
++            case _MM_SHUFFLE(1, 1, 3, 3):                    \
++                ret = _mm_shuffle_ps_1133(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(2, 0, 1, 0):                    \
++                ret = _mm_shuffle_ps_2010(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(2, 0, 0, 1):                    \
++                ret = _mm_shuffle_ps_2001(_a, _b);           \
++                break;                                       \
++            case _MM_SHUFFLE(2, 0, 3, 2):                    \
++                ret = _mm_shuffle_ps_2032(_a, _b);           \
++                break;                                       \
++            default:                                         \
++                ret = _mm_shuffle_ps_default(_a, _b, (imm)); \
++                break;                                       \
++        } _sse2neon_return(ret);)
++#endif
++
++// Compute the square root of packed single-precision (32-bit) floating-point
++// elements in a, and store the results in dst.
++// Due to ARMv7-A NEON's lack of a precise square root intrinsic, we implement
++// square root by multiplying input in with its reciprocal square root before
++// using the Newton-Raphson method to approximate the results.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sqrt_ps
++FORCE_INLINE __m128 _mm_sqrt_ps(__m128 in)
++{
++#if (defined(__aarch64__) || defined(_M_ARM64)) && !SSE2NEON_PRECISE_SQRT
++    return vreinterpretq_m128_f32(vsqrtq_f32(vreinterpretq_f32_m128(in)));
++#else
++    float32x4_t recip = vrsqrteq_f32(vreinterpretq_f32_m128(in));
++
++    // Test for vrsqrteq_f32(0) -> positive infinity case.
++    // Change to zero, so that s * 1/sqrt(s) result is zero too.
++    const uint32x4_t pos_inf = vdupq_n_u32(0x7F800000);
++    const uint32x4_t div_by_zero =
++        vceqq_u32(pos_inf, vreinterpretq_u32_f32(recip));
++    recip = vreinterpretq_f32_u32(
++        vandq_u32(vmvnq_u32(div_by_zero), vreinterpretq_u32_f32(recip)));
++
++    recip = vmulq_f32(
++        vrsqrtsq_f32(vmulq_f32(recip, recip), vreinterpretq_f32_m128(in)),
++        recip);
++    // Additional Netwon-Raphson iteration for accuracy
++    recip = vmulq_f32(
++        vrsqrtsq_f32(vmulq_f32(recip, recip), vreinterpretq_f32_m128(in)),
++        recip);
++
++    // sqrt(s) = s * 1/sqrt(s)
++    return vreinterpretq_m128_f32(vmulq_f32(vreinterpretq_f32_m128(in), recip));
++#endif
++}
++
++// Compute the square root of the lower single-precision (32-bit) floating-point
++// element in a, store the result in the lower element of dst, and copy the
++// upper 3 packed elements from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sqrt_ss
++FORCE_INLINE __m128 _mm_sqrt_ss(__m128 in)
++{
++    float32_t value =
++        vgetq_lane_f32(vreinterpretq_f32_m128(_mm_sqrt_ps(in)), 0);
++    return vreinterpretq_m128_f32(
++        vsetq_lane_f32(value, vreinterpretq_f32_m128(in), 0));
++}
++
++// Store 128-bits (composed of 4 packed single-precision (32-bit) floating-point
++// elements) from a into memory. mem_addr must be aligned on a 16-byte boundary
++// or a general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_store_ps
++FORCE_INLINE void _mm_store_ps(float *p, __m128 a)
++{
++    vst1q_f32(p, vreinterpretq_f32_m128(a));
++}
++
++// Store the lower single-precision (32-bit) floating-point element from a into
++// 4 contiguous elements in memory. mem_addr must be aligned on a 16-byte
++// boundary or a general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_store_ps1
++FORCE_INLINE void _mm_store_ps1(float *p, __m128 a)
++{
++    float32_t a0 = vgetq_lane_f32(vreinterpretq_f32_m128(a), 0);
++    vst1q_f32(p, vdupq_n_f32(a0));
++}
++
++// Store the lower single-precision (32-bit) floating-point element from a into
++// memory. mem_addr does not need to be aligned on any particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_store_ss
++FORCE_INLINE void _mm_store_ss(float *p, __m128 a)
++{
++    vst1q_lane_f32(p, vreinterpretq_f32_m128(a), 0);
++}
++
++// Store the lower single-precision (32-bit) floating-point element from a into
++// 4 contiguous elements in memory. mem_addr must be aligned on a 16-byte
++// boundary or a general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_store1_ps
++#define _mm_store1_ps _mm_store_ps1
++
++// Store the upper 2 single-precision (32-bit) floating-point elements from a
++// into memory.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storeh_pi
++FORCE_INLINE void _mm_storeh_pi(__m64 *p, __m128 a)
++{
++    *p = vreinterpret_m64_f32(vget_high_f32(a));
++}
++
++// Store the lower 2 single-precision (32-bit) floating-point elements from a
++// into memory.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storel_pi
++FORCE_INLINE void _mm_storel_pi(__m64 *p, __m128 a)
++{
++    *p = vreinterpret_m64_f32(vget_low_f32(a));
++}
++
++// Store 4 single-precision (32-bit) floating-point elements from a into memory
++// in reverse order. mem_addr must be aligned on a 16-byte boundary or a
++// general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storer_ps
++FORCE_INLINE void _mm_storer_ps(float *p, __m128 a)
++{
++    float32x4_t tmp = vrev64q_f32(vreinterpretq_f32_m128(a));
++    float32x4_t rev = vextq_f32(tmp, tmp, 2);
++    vst1q_f32(p, rev);
++}
++
++// Store 128-bits (composed of 4 packed single-precision (32-bit) floating-point
++// elements) from a into memory. mem_addr does not need to be aligned on any
++// particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storeu_ps
++FORCE_INLINE void _mm_storeu_ps(float *p, __m128 a)
++{
++    vst1q_f32(p, vreinterpretq_f32_m128(a));
++}
++
++// Stores 16-bits of integer data a at the address p.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storeu_si16
++FORCE_INLINE void _mm_storeu_si16(void *p, __m128i a)
++{
++    vst1q_lane_s16((int16_t *) p, vreinterpretq_s16_m128i(a), 0);
++}
++
++// Stores 64-bits of integer data a at the address p.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storeu_si64
++FORCE_INLINE void _mm_storeu_si64(void *p, __m128i a)
++{
++    vst1q_lane_s64((int64_t *) p, vreinterpretq_s64_m128i(a), 0);
++}
++
++// Store 64-bits of integer data from a into memory using a non-temporal memory
++// hint.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_stream_pi
++FORCE_INLINE void _mm_stream_pi(__m64 *p, __m64 a)
++{
++    vst1_s64((int64_t *) p, vreinterpret_s64_m64(a));
++}
++
++// Store 128-bits (composed of 4 packed single-precision (32-bit) floating-
++// point elements) from a into memory using a non-temporal memory hint.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_stream_ps
++FORCE_INLINE void _mm_stream_ps(float *p, __m128 a)
++{
++#if __has_builtin(__builtin_nontemporal_store)
++    __builtin_nontemporal_store(a, (float32x4_t *) p);
++#else
++    vst1q_f32(p, vreinterpretq_f32_m128(a));
++#endif
++}
++
++// Subtract packed single-precision (32-bit) floating-point elements in b from
++// packed single-precision (32-bit) floating-point elements in a, and store the
++// results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sub_ps
++FORCE_INLINE __m128 _mm_sub_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_f32(
++        vsubq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++}
++
++// Subtract the lower single-precision (32-bit) floating-point element in b from
++// the lower single-precision (32-bit) floating-point element in a, store the
++// result in the lower element of dst, and copy the upper 3 packed elements from
++// a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sub_ss
++FORCE_INLINE __m128 _mm_sub_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_sub_ps(a, b));
++}
++
++// Macro: Transpose the 4x4 matrix formed by the 4 rows of single-precision
++// (32-bit) floating-point elements in row0, row1, row2, and row3, and store the
++// transposed matrix in these vectors (row0 now contains column 0, etc.).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=MM_TRANSPOSE4_PS
++#define _MM_TRANSPOSE4_PS(row0, row1, row2, row3)         \
++    do {                                                  \
++        float32x4x2_t ROW01 = vtrnq_f32(row0, row1);      \
++        float32x4x2_t ROW23 = vtrnq_f32(row2, row3);      \
++        row0 = vcombine_f32(vget_low_f32(ROW01.val[0]),   \
++                            vget_low_f32(ROW23.val[0]));  \
++        row1 = vcombine_f32(vget_low_f32(ROW01.val[1]),   \
++                            vget_low_f32(ROW23.val[1]));  \
++        row2 = vcombine_f32(vget_high_f32(ROW01.val[0]),  \
++                            vget_high_f32(ROW23.val[0])); \
++        row3 = vcombine_f32(vget_high_f32(ROW01.val[1]),  \
++                            vget_high_f32(ROW23.val[1])); \
++    } while (0)
++
++// according to the documentation, these intrinsics behave the same as the
++// non-'u' versions.  We'll just alias them here.
++#define _mm_ucomieq_ss _mm_comieq_ss
++#define _mm_ucomige_ss _mm_comige_ss
++#define _mm_ucomigt_ss _mm_comigt_ss
++#define _mm_ucomile_ss _mm_comile_ss
++#define _mm_ucomilt_ss _mm_comilt_ss
++#define _mm_ucomineq_ss _mm_comineq_ss
++
++// Return vector of type __m128i with undefined elements.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=mm_undefined_si128
++FORCE_INLINE __m128i _mm_undefined_si128(void)
++{
++#if defined(__GNUC__) || defined(__clang__)
++#pragma GCC diagnostic push
++#pragma GCC diagnostic ignored "-Wuninitialized"
++#endif
++    __m128i a;
++#if defined(_MSC_VER)
++    a = _mm_setzero_si128();
++#endif
++    return a;
++#if defined(__GNUC__) || defined(__clang__)
++#pragma GCC diagnostic pop
++#endif
++}
++
++// Return vector of type __m128 with undefined elements.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_undefined_ps
++FORCE_INLINE __m128 _mm_undefined_ps(void)
++{
++#if defined(__GNUC__) || defined(__clang__)
++#pragma GCC diagnostic push
++#pragma GCC diagnostic ignored "-Wuninitialized"
++#endif
++    __m128 a;
++#if defined(_MSC_VER)
++    a = _mm_setzero_ps();
++#endif
++    return a;
++#if defined(__GNUC__) || defined(__clang__)
++#pragma GCC diagnostic pop
++#endif
++}
++
++// Unpack and interleave single-precision (32-bit) floating-point elements from
++// the high half a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_unpackhi_ps
++FORCE_INLINE __m128 _mm_unpackhi_ps(__m128 a, __m128 b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128_f32(
++        vzip2q_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++#else
++    float32x2_t a1 = vget_high_f32(vreinterpretq_f32_m128(a));
++    float32x2_t b1 = vget_high_f32(vreinterpretq_f32_m128(b));
++    float32x2x2_t result = vzip_f32(a1, b1);
++    return vreinterpretq_m128_f32(vcombine_f32(result.val[0], result.val[1]));
++#endif
++}
++
++// Unpack and interleave single-precision (32-bit) floating-point elements from
++// the low half of a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_unpacklo_ps
++FORCE_INLINE __m128 _mm_unpacklo_ps(__m128 a, __m128 b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128_f32(
++        vzip1q_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++#else
++    float32x2_t a1 = vget_low_f32(vreinterpretq_f32_m128(a));
++    float32x2_t b1 = vget_low_f32(vreinterpretq_f32_m128(b));
++    float32x2x2_t result = vzip_f32(a1, b1);
++    return vreinterpretq_m128_f32(vcombine_f32(result.val[0], result.val[1]));
++#endif
++}
++
++// Compute the bitwise XOR of packed single-precision (32-bit) floating-point
++// elements in a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_xor_ps
++FORCE_INLINE __m128 _mm_xor_ps(__m128 a, __m128 b)
++{
++    return vreinterpretq_m128_s32(
++        veorq_s32(vreinterpretq_s32_m128(a), vreinterpretq_s32_m128(b)));
++}
++
++/* SSE2 */
++
++// Add packed 16-bit integers in a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_add_epi16
++FORCE_INLINE __m128i _mm_add_epi16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s16(
++        vaddq_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b)));
++}
++
++// Add packed 32-bit integers in a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_add_epi32
++FORCE_INLINE __m128i _mm_add_epi32(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s32(
++        vaddq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++}
++
++// Add packed 64-bit integers in a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_add_epi64
++FORCE_INLINE __m128i _mm_add_epi64(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s64(
++        vaddq_s64(vreinterpretq_s64_m128i(a), vreinterpretq_s64_m128i(b)));
++}
++
++// Add packed 8-bit integers in a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_add_epi8
++FORCE_INLINE __m128i _mm_add_epi8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s8(
++        vaddq_s8(vreinterpretq_s8_m128i(a), vreinterpretq_s8_m128i(b)));
++}
++
++// Add packed double-precision (64-bit) floating-point elements in a and b, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_add_pd
++FORCE_INLINE __m128d _mm_add_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vaddq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#else
++    double *da = (double *) &a;
++    double *db = (double *) &b;
++    double c[2];
++    c[0] = da[0] + db[0];
++    c[1] = da[1] + db[1];
++    return vld1q_f32((float32_t *) c);
++#endif
++}
++
++// Add the lower double-precision (64-bit) floating-point element in a and b,
++// store the result in the lower element of dst, and copy the upper element from
++// a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_add_sd
++FORCE_INLINE __m128d _mm_add_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return _mm_move_sd(a, _mm_add_pd(a, b));
++#else
++    double *da = (double *) &a;
++    double *db = (double *) &b;
++    double c[2];
++    c[0] = da[0] + db[0];
++    c[1] = da[1];
++    return vld1q_f32((float32_t *) c);
++#endif
++}
++
++// Add 64-bit integers a and b, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_add_si64
++FORCE_INLINE __m64 _mm_add_si64(__m64 a, __m64 b)
++{
++    return vreinterpret_m64_s64(
++        vadd_s64(vreinterpret_s64_m64(a), vreinterpret_s64_m64(b)));
++}
++
++// Add packed signed 16-bit integers in a and b using saturation, and store the
++// results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_adds_epi16
++FORCE_INLINE __m128i _mm_adds_epi16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s16(
++        vqaddq_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b)));
++}
++
++// Add packed signed 8-bit integers in a and b using saturation, and store the
++// results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_adds_epi8
++FORCE_INLINE __m128i _mm_adds_epi8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s8(
++        vqaddq_s8(vreinterpretq_s8_m128i(a), vreinterpretq_s8_m128i(b)));
++}
++
++// Add packed unsigned 16-bit integers in a and b using saturation, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_adds_epu16
++FORCE_INLINE __m128i _mm_adds_epu16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u16(
++        vqaddq_u16(vreinterpretq_u16_m128i(a), vreinterpretq_u16_m128i(b)));
++}
++
++// Add packed unsigned 8-bit integers in a and b using saturation, and store the
++// results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_adds_epu8
++FORCE_INLINE __m128i _mm_adds_epu8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u8(
++        vqaddq_u8(vreinterpretq_u8_m128i(a), vreinterpretq_u8_m128i(b)));
++}
++
++// Compute the bitwise AND of packed double-precision (64-bit) floating-point
++// elements in a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_and_pd
++FORCE_INLINE __m128d _mm_and_pd(__m128d a, __m128d b)
++{
++    return vreinterpretq_m128d_s64(
++        vandq_s64(vreinterpretq_s64_m128d(a), vreinterpretq_s64_m128d(b)));
++}
++
++// Compute the bitwise AND of 128 bits (representing integer data) in a and b,
++// and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_and_si128
++FORCE_INLINE __m128i _mm_and_si128(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s32(
++        vandq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++}
++
++// Compute the bitwise NOT of packed double-precision (64-bit) floating-point
++// elements in a and then AND with b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_andnot_pd
++FORCE_INLINE __m128d _mm_andnot_pd(__m128d a, __m128d b)
++{
++    // *NOTE* argument swap
++    return vreinterpretq_m128d_s64(
++        vbicq_s64(vreinterpretq_s64_m128d(b), vreinterpretq_s64_m128d(a)));
++}
++
++// Compute the bitwise NOT of 128 bits (representing integer data) in a and then
++// AND with b, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_andnot_si128
++FORCE_INLINE __m128i _mm_andnot_si128(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s32(
++        vbicq_s32(vreinterpretq_s32_m128i(b),
++                  vreinterpretq_s32_m128i(a)));  // *NOTE* argument swap
++}
++
++// Average packed unsigned 16-bit integers in a and b, and store the results in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_avg_epu16
++FORCE_INLINE __m128i _mm_avg_epu16(__m128i a, __m128i b)
++{
++    return (__m128i) vrhaddq_u16(vreinterpretq_u16_m128i(a),
++                                 vreinterpretq_u16_m128i(b));
++}
++
++// Average packed unsigned 8-bit integers in a and b, and store the results in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_avg_epu8
++FORCE_INLINE __m128i _mm_avg_epu8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u8(
++        vrhaddq_u8(vreinterpretq_u8_m128i(a), vreinterpretq_u8_m128i(b)));
++}
++
++// Shift a left by imm8 bytes while shifting in zeros, and store the results in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_bslli_si128
++#define _mm_bslli_si128(a, imm) _mm_slli_si128(a, imm)
++
++// Shift a right by imm8 bytes while shifting in zeros, and store the results in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_bsrli_si128
++#define _mm_bsrli_si128(a, imm) _mm_srli_si128(a, imm)
++
++// Cast vector of type __m128d to type __m128. This intrinsic is only used for
++// compilation and does not generate any instructions, thus it has zero latency.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_castpd_ps
++FORCE_INLINE __m128 _mm_castpd_ps(__m128d a)
++{
++    return vreinterpretq_m128_s64(vreinterpretq_s64_m128d(a));
++}
++
++// Cast vector of type __m128d to type __m128i. This intrinsic is only used for
++// compilation and does not generate any instructions, thus it has zero latency.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_castpd_si128
++FORCE_INLINE __m128i _mm_castpd_si128(__m128d a)
++{
++    return vreinterpretq_m128i_s64(vreinterpretq_s64_m128d(a));
++}
++
++// Cast vector of type __m128 to type __m128d. This intrinsic is only used for
++// compilation and does not generate any instructions, thus it has zero latency.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_castps_pd
++FORCE_INLINE __m128d _mm_castps_pd(__m128 a)
++{
++    return vreinterpretq_m128d_s32(vreinterpretq_s32_m128(a));
++}
++
++// Cast vector of type __m128 to type __m128i. This intrinsic is only used for
++// compilation and does not generate any instructions, thus it has zero latency.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_castps_si128
++FORCE_INLINE __m128i _mm_castps_si128(__m128 a)
++{
++    return vreinterpretq_m128i_s32(vreinterpretq_s32_m128(a));
++}
++
++// Cast vector of type __m128i to type __m128d. This intrinsic is only used for
++// compilation and does not generate any instructions, thus it has zero latency.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_castsi128_pd
++FORCE_INLINE __m128d _mm_castsi128_pd(__m128i a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(vreinterpretq_f64_m128i(a));
++#else
++    return vreinterpretq_m128d_f32(vreinterpretq_f32_m128i(a));
++#endif
++}
++
++// Cast vector of type __m128i to type __m128. This intrinsic is only used for
++// compilation and does not generate any instructions, thus it has zero latency.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_castsi128_ps
++FORCE_INLINE __m128 _mm_castsi128_ps(__m128i a)
++{
++    return vreinterpretq_m128_s32(vreinterpretq_s32_m128i(a));
++}
++
++// Invalidate and flush the cache line that contains p from all levels of the
++// cache hierarchy.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_clflush
++#if defined(__APPLE__)
++#include <libkern/OSCacheControl.h>
++#endif
++FORCE_INLINE void _mm_clflush(void const *p)
++{
++    (void) p;
++
++    /* sys_icache_invalidate is supported since macOS 10.5.
++     * However, it does not work on non-jailbroken iOS devices, although the
++     * compilation is successful.
++     */
++#if defined(__APPLE__)
++    sys_icache_invalidate((void *) (uintptr_t) p, SSE2NEON_CACHELINE_SIZE);
++#elif defined(__GNUC__) || defined(__clang__)
++    uintptr_t ptr = (uintptr_t) p;
++    __builtin___clear_cache((char *) ptr,
++                            (char *) ptr + SSE2NEON_CACHELINE_SIZE);
++#elif (_MSC_VER) && SSE2NEON_INCLUDE_WINDOWS_H
++    FlushInstructionCache(GetCurrentProcess(), p, SSE2NEON_CACHELINE_SIZE);
++#endif
++}
++
++// Compare packed 16-bit integers in a and b for equality, and store the results
++// in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpeq_epi16
++FORCE_INLINE __m128i _mm_cmpeq_epi16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u16(
++        vceqq_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b)));
++}
++
++// Compare packed 32-bit integers in a and b for equality, and store the results
++// in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpeq_epi32
++FORCE_INLINE __m128i _mm_cmpeq_epi32(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u32(
++        vceqq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++}
++
++// Compare packed 8-bit integers in a and b for equality, and store the results
++// in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpeq_epi8
++FORCE_INLINE __m128i _mm_cmpeq_epi8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u8(
++        vceqq_s8(vreinterpretq_s8_m128i(a), vreinterpretq_s8_m128i(b)));
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b
++// for equality, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpeq_pd
++FORCE_INLINE __m128d _mm_cmpeq_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_u64(
++        vceqq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#else
++    // (a == b) -> (a_lo == b_lo) && (a_hi == b_hi)
++    uint32x4_t cmp =
++        vceqq_u32(vreinterpretq_u32_m128d(a), vreinterpretq_u32_m128d(b));
++    uint32x4_t swapped = vrev64q_u32(cmp);
++    return vreinterpretq_m128d_u32(vandq_u32(cmp, swapped));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b for equality, store the result in the lower element of dst, and copy the
++// upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpeq_sd
++FORCE_INLINE __m128d _mm_cmpeq_sd(__m128d a, __m128d b)
++{
++    return _mm_move_sd(a, _mm_cmpeq_pd(a, b));
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b
++// for greater-than-or-equal, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpge_pd
++FORCE_INLINE __m128d _mm_cmpge_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_u64(
++        vcgeq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t b1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] = (*(double *) &a0) >= (*(double *) &b0) ? ~UINT64_C(0) : UINT64_C(0);
++    d[1] = (*(double *) &a1) >= (*(double *) &b1) ? ~UINT64_C(0) : UINT64_C(0);
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b for greater-than-or-equal, store the result in the lower element of dst,
++// and copy the upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpge_sd
++FORCE_INLINE __m128d _mm_cmpge_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return _mm_move_sd(a, _mm_cmpge_pd(a, b));
++#else
++    // expand "_mm_cmpge_pd()" to reduce unnecessary operations
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] = (*(double *) &a0) >= (*(double *) &b0) ? ~UINT64_C(0) : UINT64_C(0);
++    d[1] = a1;
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare packed signed 16-bit integers in a and b for greater-than, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpgt_epi16
++FORCE_INLINE __m128i _mm_cmpgt_epi16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u16(
++        vcgtq_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b)));
++}
++
++// Compare packed signed 32-bit integers in a and b for greater-than, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpgt_epi32
++FORCE_INLINE __m128i _mm_cmpgt_epi32(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u32(
++        vcgtq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++}
++
++// Compare packed signed 8-bit integers in a and b for greater-than, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpgt_epi8
++FORCE_INLINE __m128i _mm_cmpgt_epi8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u8(
++        vcgtq_s8(vreinterpretq_s8_m128i(a), vreinterpretq_s8_m128i(b)));
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b
++// for greater-than, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpgt_pd
++FORCE_INLINE __m128d _mm_cmpgt_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_u64(
++        vcgtq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t b1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] = (*(double *) &a0) > (*(double *) &b0) ? ~UINT64_C(0) : UINT64_C(0);
++    d[1] = (*(double *) &a1) > (*(double *) &b1) ? ~UINT64_C(0) : UINT64_C(0);
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b for greater-than, store the result in the lower element of dst, and copy
++// the upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpgt_sd
++FORCE_INLINE __m128d _mm_cmpgt_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return _mm_move_sd(a, _mm_cmpgt_pd(a, b));
++#else
++    // expand "_mm_cmpge_pd()" to reduce unnecessary operations
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] = (*(double *) &a0) > (*(double *) &b0) ? ~UINT64_C(0) : UINT64_C(0);
++    d[1] = a1;
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b
++// for less-than-or-equal, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmple_pd
++FORCE_INLINE __m128d _mm_cmple_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_u64(
++        vcleq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t b1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] = (*(double *) &a0) <= (*(double *) &b0) ? ~UINT64_C(0) : UINT64_C(0);
++    d[1] = (*(double *) &a1) <= (*(double *) &b1) ? ~UINT64_C(0) : UINT64_C(0);
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b for less-than-or-equal, store the result in the lower element of dst, and
++// copy the upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmple_sd
++FORCE_INLINE __m128d _mm_cmple_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return _mm_move_sd(a, _mm_cmple_pd(a, b));
++#else
++    // expand "_mm_cmpge_pd()" to reduce unnecessary operations
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] = (*(double *) &a0) <= (*(double *) &b0) ? ~UINT64_C(0) : UINT64_C(0);
++    d[1] = a1;
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare packed signed 16-bit integers in a and b for less-than, and store the
++// results in dst. Note: This intrinsic emits the pcmpgtw instruction with the
++// order of the operands switched.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmplt_epi16
++FORCE_INLINE __m128i _mm_cmplt_epi16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u16(
++        vcltq_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b)));
++}
++
++// Compare packed signed 32-bit integers in a and b for less-than, and store the
++// results in dst. Note: This intrinsic emits the pcmpgtd instruction with the
++// order of the operands switched.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmplt_epi32
++FORCE_INLINE __m128i _mm_cmplt_epi32(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u32(
++        vcltq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++}
++
++// Compare packed signed 8-bit integers in a and b for less-than, and store the
++// results in dst. Note: This intrinsic emits the pcmpgtb instruction with the
++// order of the operands switched.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmplt_epi8
++FORCE_INLINE __m128i _mm_cmplt_epi8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u8(
++        vcltq_s8(vreinterpretq_s8_m128i(a), vreinterpretq_s8_m128i(b)));
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b
++// for less-than, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmplt_pd
++FORCE_INLINE __m128d _mm_cmplt_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_u64(
++        vcltq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t b1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] = (*(double *) &a0) < (*(double *) &b0) ? ~UINT64_C(0) : UINT64_C(0);
++    d[1] = (*(double *) &a1) < (*(double *) &b1) ? ~UINT64_C(0) : UINT64_C(0);
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b for less-than, store the result in the lower element of dst, and copy the
++// upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmplt_sd
++FORCE_INLINE __m128d _mm_cmplt_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return _mm_move_sd(a, _mm_cmplt_pd(a, b));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] = (*(double *) &a0) < (*(double *) &b0) ? ~UINT64_C(0) : UINT64_C(0);
++    d[1] = a1;
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b
++// for not-equal, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpneq_pd
++FORCE_INLINE __m128d _mm_cmpneq_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_s32(vmvnq_s32(vreinterpretq_s32_u64(
++        vceqq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)))));
++#else
++    // (a == b) -> (a_lo == b_lo) && (a_hi == b_hi)
++    uint32x4_t cmp =
++        vceqq_u32(vreinterpretq_u32_m128d(a), vreinterpretq_u32_m128d(b));
++    uint32x4_t swapped = vrev64q_u32(cmp);
++    return vreinterpretq_m128d_u32(vmvnq_u32(vandq_u32(cmp, swapped)));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b for not-equal, store the result in the lower element of dst, and copy the
++// upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpneq_sd
++FORCE_INLINE __m128d _mm_cmpneq_sd(__m128d a, __m128d b)
++{
++    return _mm_move_sd(a, _mm_cmpneq_pd(a, b));
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b
++// for not-greater-than-or-equal, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpnge_pd
++FORCE_INLINE __m128d _mm_cmpnge_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_u64(veorq_u64(
++        vcgeq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)),
++        vdupq_n_u64(UINT64_MAX)));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t b1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] =
++        !((*(double *) &a0) >= (*(double *) &b0)) ? ~UINT64_C(0) : UINT64_C(0);
++    d[1] =
++        !((*(double *) &a1) >= (*(double *) &b1)) ? ~UINT64_C(0) : UINT64_C(0);
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b for not-greater-than-or-equal, store the result in the lower element of
++// dst, and copy the upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpnge_sd
++FORCE_INLINE __m128d _mm_cmpnge_sd(__m128d a, __m128d b)
++{
++    return _mm_move_sd(a, _mm_cmpnge_pd(a, b));
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b
++// for not-greater-than, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_cmpngt_pd
++FORCE_INLINE __m128d _mm_cmpngt_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_u64(veorq_u64(
++        vcgtq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)),
++        vdupq_n_u64(UINT64_MAX)));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t b1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] =
++        !((*(double *) &a0) > (*(double *) &b0)) ? ~UINT64_C(0) : UINT64_C(0);
++    d[1] =
++        !((*(double *) &a1) > (*(double *) &b1)) ? ~UINT64_C(0) : UINT64_C(0);
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b for not-greater-than, store the result in the lower element of dst, and
++// copy the upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpngt_sd
++FORCE_INLINE __m128d _mm_cmpngt_sd(__m128d a, __m128d b)
++{
++    return _mm_move_sd(a, _mm_cmpngt_pd(a, b));
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b
++// for not-less-than-or-equal, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpnle_pd
++FORCE_INLINE __m128d _mm_cmpnle_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_u64(veorq_u64(
++        vcleq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)),
++        vdupq_n_u64(UINT64_MAX)));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t b1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] =
++        !((*(double *) &a0) <= (*(double *) &b0)) ? ~UINT64_C(0) : UINT64_C(0);
++    d[1] =
++        !((*(double *) &a1) <= (*(double *) &b1)) ? ~UINT64_C(0) : UINT64_C(0);
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b for not-less-than-or-equal, store the result in the lower element of dst,
++// and copy the upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpnle_sd
++FORCE_INLINE __m128d _mm_cmpnle_sd(__m128d a, __m128d b)
++{
++    return _mm_move_sd(a, _mm_cmpnle_pd(a, b));
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b
++// for not-less-than, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpnlt_pd
++FORCE_INLINE __m128d _mm_cmpnlt_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_u64(veorq_u64(
++        vcltq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)),
++        vdupq_n_u64(UINT64_MAX)));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t b1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] =
++        !((*(double *) &a0) < (*(double *) &b0)) ? ~UINT64_C(0) : UINT64_C(0);
++    d[1] =
++        !((*(double *) &a1) < (*(double *) &b1)) ? ~UINT64_C(0) : UINT64_C(0);
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b for not-less-than, store the result in the lower element of dst, and copy
++// the upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpnlt_sd
++FORCE_INLINE __m128d _mm_cmpnlt_sd(__m128d a, __m128d b)
++{
++    return _mm_move_sd(a, _mm_cmpnlt_pd(a, b));
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b
++// to see if neither is NaN, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpord_pd
++FORCE_INLINE __m128d _mm_cmpord_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    // Excluding NaNs, any two floating point numbers can be compared.
++    uint64x2_t not_nan_a =
++        vceqq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(a));
++    uint64x2_t not_nan_b =
++        vceqq_f64(vreinterpretq_f64_m128d(b), vreinterpretq_f64_m128d(b));
++    return vreinterpretq_m128d_u64(vandq_u64(not_nan_a, not_nan_b));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t b1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] = ((*(double *) &a0) == (*(double *) &a0) &&
++            (*(double *) &b0) == (*(double *) &b0))
++               ? ~UINT64_C(0)
++               : UINT64_C(0);
++    d[1] = ((*(double *) &a1) == (*(double *) &a1) &&
++            (*(double *) &b1) == (*(double *) &b1))
++               ? ~UINT64_C(0)
++               : UINT64_C(0);
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b to see if neither is NaN, store the result in the lower element of dst, and
++// copy the upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpord_sd
++FORCE_INLINE __m128d _mm_cmpord_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return _mm_move_sd(a, _mm_cmpord_pd(a, b));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t d[2];
++    d[0] = ((*(double *) &a0) == (*(double *) &a0) &&
++            (*(double *) &b0) == (*(double *) &b0))
++               ? ~UINT64_C(0)
++               : UINT64_C(0);
++    d[1] = a1;
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b
++// to see if either is NaN, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpunord_pd
++FORCE_INLINE __m128d _mm_cmpunord_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    // Two NaNs are not equal in comparison operation.
++    uint64x2_t not_nan_a =
++        vceqq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(a));
++    uint64x2_t not_nan_b =
++        vceqq_f64(vreinterpretq_f64_m128d(b), vreinterpretq_f64_m128d(b));
++    return vreinterpretq_m128d_s32(
++        vmvnq_s32(vreinterpretq_s32_u64(vandq_u64(not_nan_a, not_nan_b))));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t b1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] = ((*(double *) &a0) == (*(double *) &a0) &&
++            (*(double *) &b0) == (*(double *) &b0))
++               ? UINT64_C(0)
++               : ~UINT64_C(0);
++    d[1] = ((*(double *) &a1) == (*(double *) &a1) &&
++            (*(double *) &b1) == (*(double *) &b1))
++               ? UINT64_C(0)
++               : ~UINT64_C(0);
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b to see if either is NaN, store the result in the lower element of dst, and
++// copy the upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpunord_sd
++FORCE_INLINE __m128d _mm_cmpunord_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return _mm_move_sd(a, _mm_cmpunord_pd(a, b));
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t d[2];
++    d[0] = ((*(double *) &a0) == (*(double *) &a0) &&
++            (*(double *) &b0) == (*(double *) &b0))
++               ? UINT64_C(0)
++               : ~UINT64_C(0);
++    d[1] = a1;
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point element in a and b
++// for greater-than-or-equal, and return the boolean result (0 or 1).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_comige_sd
++FORCE_INLINE int _mm_comige_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vgetq_lane_u64(vcgeq_f64(a, b), 0) & 0x1;
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++
++    return (*(double *) &a0 >= *(double *) &b0);
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point element in a and b
++// for greater-than, and return the boolean result (0 or 1).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_comigt_sd
++FORCE_INLINE int _mm_comigt_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vgetq_lane_u64(vcgtq_f64(a, b), 0) & 0x1;
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++
++    return (*(double *) &a0 > *(double *) &b0);
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point element in a and b
++// for less-than-or-equal, and return the boolean result (0 or 1).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_comile_sd
++FORCE_INLINE int _mm_comile_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vgetq_lane_u64(vcleq_f64(a, b), 0) & 0x1;
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++
++    return (*(double *) &a0 <= *(double *) &b0);
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point element in a and b
++// for less-than, and return the boolean result (0 or 1).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_comilt_sd
++FORCE_INLINE int _mm_comilt_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vgetq_lane_u64(vcltq_f64(a, b), 0) & 0x1;
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++
++    return (*(double *) &a0 < *(double *) &b0);
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point element in a and b
++// for equality, and return the boolean result (0 or 1).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_comieq_sd
++FORCE_INLINE int _mm_comieq_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vgetq_lane_u64(vceqq_f64(a, b), 0) & 0x1;
++#else
++    uint32x4_t a_not_nan =
++        vceqq_u32(vreinterpretq_u32_m128d(a), vreinterpretq_u32_m128d(a));
++    uint32x4_t b_not_nan =
++        vceqq_u32(vreinterpretq_u32_m128d(b), vreinterpretq_u32_m128d(b));
++    uint32x4_t a_and_b_not_nan = vandq_u32(a_not_nan, b_not_nan);
++    uint32x4_t a_eq_b =
++        vceqq_u32(vreinterpretq_u32_m128d(a), vreinterpretq_u32_m128d(b));
++    uint64x2_t and_results = vandq_u64(vreinterpretq_u64_u32(a_and_b_not_nan),
++                                       vreinterpretq_u64_u32(a_eq_b));
++    return vgetq_lane_u64(and_results, 0) & 0x1;
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point element in a and b
++// for not-equal, and return the boolean result (0 or 1).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_comineq_sd
++FORCE_INLINE int _mm_comineq_sd(__m128d a, __m128d b)
++{
++    return !_mm_comieq_sd(a, b);
++}
++
++// Convert packed signed 32-bit integers in a to packed double-precision
++// (64-bit) floating-point elements, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepi32_pd
++FORCE_INLINE __m128d _mm_cvtepi32_pd(__m128i a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vcvtq_f64_s64(vmovl_s32(vget_low_s32(vreinterpretq_s32_m128i(a)))));
++#else
++    double a0 = (double) vgetq_lane_s32(vreinterpretq_s32_m128i(a), 0);
++    double a1 = (double) vgetq_lane_s32(vreinterpretq_s32_m128i(a), 1);
++    return _mm_set_pd(a1, a0);
++#endif
++}
++
++// Convert packed signed 32-bit integers in a to packed single-precision
++// (32-bit) floating-point elements, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepi32_ps
++FORCE_INLINE __m128 _mm_cvtepi32_ps(__m128i a)
++{
++    return vreinterpretq_m128_f32(vcvtq_f32_s32(vreinterpretq_s32_m128i(a)));
++}
++
++// Convert packed double-precision (64-bit) floating-point elements in a to
++// packed 32-bit integers, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtpd_epi32
++FORCE_INLINE __m128i _mm_cvtpd_epi32(__m128d a)
++{
++// vrnd32xq_f64 not supported on clang
++#if defined(__ARM_FEATURE_FRINT) && !defined(__clang__)
++    float64x2_t rounded = vrnd32xq_f64(vreinterpretq_f64_m128d(a));
++    int64x2_t integers = vcvtq_s64_f64(rounded);
++    return vreinterpretq_m128i_s32(
++        vcombine_s32(vmovn_s64(integers), vdup_n_s32(0)));
++#else
++    __m128d rnd = _mm_round_pd(a, _MM_FROUND_CUR_DIRECTION);
++    double d0 = ((double *) &rnd)[0];
++    double d1 = ((double *) &rnd)[1];
++    return _mm_set_epi32(0, 0, (int32_t) d1, (int32_t) d0);
++#endif
++}
++
++// Convert packed double-precision (64-bit) floating-point elements in a to
++// packed 32-bit integers, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtpd_pi32
++FORCE_INLINE __m64 _mm_cvtpd_pi32(__m128d a)
++{
++    __m128d rnd = _mm_round_pd(a, _MM_FROUND_CUR_DIRECTION);
++    double d0 = ((double *) &rnd)[0];
++    double d1 = ((double *) &rnd)[1];
++    int32_t ALIGN_STRUCT(16) data[2] = {(int32_t) d0, (int32_t) d1};
++    return vreinterpret_m64_s32(vld1_s32(data));
++}
++
++// Convert packed double-precision (64-bit) floating-point elements in a to
++// packed single-precision (32-bit) floating-point elements, and store the
++// results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtpd_ps
++FORCE_INLINE __m128 _mm_cvtpd_ps(__m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    float32x2_t tmp = vcvt_f32_f64(vreinterpretq_f64_m128d(a));
++    return vreinterpretq_m128_f32(vcombine_f32(tmp, vdup_n_f32(0)));
++#else
++    float a0 = (float) ((double *) &a)[0];
++    float a1 = (float) ((double *) &a)[1];
++    return _mm_set_ps(0, 0, a1, a0);
++#endif
++}
++
++// Convert packed signed 32-bit integers in a to packed double-precision
++// (64-bit) floating-point elements, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtpi32_pd
++FORCE_INLINE __m128d _mm_cvtpi32_pd(__m64 a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vcvtq_f64_s64(vmovl_s32(vreinterpret_s32_m64(a))));
++#else
++    double a0 = (double) vget_lane_s32(vreinterpret_s32_m64(a), 0);
++    double a1 = (double) vget_lane_s32(vreinterpret_s32_m64(a), 1);
++    return _mm_set_pd(a1, a0);
++#endif
++}
++
++// Convert packed single-precision (32-bit) floating-point elements in a to
++// packed 32-bit integers, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtps_epi32
++// *NOTE*. The default rounding mode on SSE is 'round to even', which ARMv7-A
++// does not support! It is supported on ARMv8-A however.
++FORCE_INLINE __m128i _mm_cvtps_epi32(__m128 a)
++{
++#if defined(__ARM_FEATURE_FRINT)
++    return vreinterpretq_m128i_s32(vcvtq_s32_f32(vrnd32xq_f32(a)));
++#elif (defined(__aarch64__) || defined(_M_ARM64)) || \
++    defined(__ARM_FEATURE_DIRECTED_ROUNDING)
++    switch (_MM_GET_ROUNDING_MODE()) {
++    case _MM_ROUND_NEAREST:
++        return vreinterpretq_m128i_s32(vcvtnq_s32_f32(a));
++    case _MM_ROUND_DOWN:
++        return vreinterpretq_m128i_s32(vcvtmq_s32_f32(a));
++    case _MM_ROUND_UP:
++        return vreinterpretq_m128i_s32(vcvtpq_s32_f32(a));
++    default:  // _MM_ROUND_TOWARD_ZERO
++        return vreinterpretq_m128i_s32(vcvtq_s32_f32(a));
++    }
++#else
++    float *f = (float *) &a;
++    switch (_MM_GET_ROUNDING_MODE()) {
++    case _MM_ROUND_NEAREST: {
++        uint32x4_t signmask = vdupq_n_u32(0x80000000);
++        float32x4_t half = vbslq_f32(signmask, vreinterpretq_f32_m128(a),
++                                     vdupq_n_f32(0.5f)); /* +/- 0.5 */
++        int32x4_t r_normal = vcvtq_s32_f32(vaddq_f32(
++            vreinterpretq_f32_m128(a), half)); /* round to integer: [a + 0.5]*/
++        int32x4_t r_trunc = vcvtq_s32_f32(
++            vreinterpretq_f32_m128(a)); /* truncate to integer: [a] */
++        int32x4_t plusone = vreinterpretq_s32_u32(vshrq_n_u32(
++            vreinterpretq_u32_s32(vnegq_s32(r_trunc)), 31)); /* 1 or 0 */
++        int32x4_t r_even = vbicq_s32(vaddq_s32(r_trunc, plusone),
++                                     vdupq_n_s32(1)); /* ([a] + {0,1}) & ~1 */
++        float32x4_t delta = vsubq_f32(
++            vreinterpretq_f32_m128(a),
++            vcvtq_f32_s32(r_trunc)); /* compute delta: delta = (a - [a]) */
++        uint32x4_t is_delta_half =
++            vceqq_f32(delta, half); /* delta == +/- 0.5 */
++        return vreinterpretq_m128i_s32(
++            vbslq_s32(is_delta_half, r_even, r_normal));
++    }
++    case _MM_ROUND_DOWN:
++        return _mm_set_epi32(floorf(f[3]), floorf(f[2]), floorf(f[1]),
++                             floorf(f[0]));
++    case _MM_ROUND_UP:
++        return _mm_set_epi32(ceilf(f[3]), ceilf(f[2]), ceilf(f[1]),
++                             ceilf(f[0]));
++    default:  // _MM_ROUND_TOWARD_ZERO
++        return _mm_set_epi32((int32_t) f[3], (int32_t) f[2], (int32_t) f[1],
++                             (int32_t) f[0]);
++    }
++#endif
++}
++
++// Convert packed single-precision (32-bit) floating-point elements in a to
++// packed double-precision (64-bit) floating-point elements, and store the
++// results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtps_pd
++FORCE_INLINE __m128d _mm_cvtps_pd(__m128 a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vcvt_f64_f32(vget_low_f32(vreinterpretq_f32_m128(a))));
++#else
++    double a0 = (double) vgetq_lane_f32(vreinterpretq_f32_m128(a), 0);
++    double a1 = (double) vgetq_lane_f32(vreinterpretq_f32_m128(a), 1);
++    return _mm_set_pd(a1, a0);
++#endif
++}
++
++// Copy the lower double-precision (64-bit) floating-point element of a to dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsd_f64
++FORCE_INLINE double _mm_cvtsd_f64(__m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return (double) vgetq_lane_f64(vreinterpretq_f64_m128d(a), 0);
++#else
++    return ((double *) &a)[0];
++#endif
++}
++
++// Convert the lower double-precision (64-bit) floating-point element in a to a
++// 32-bit integer, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsd_si32
++FORCE_INLINE int32_t _mm_cvtsd_si32(__m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return (int32_t) vgetq_lane_f64(vrndiq_f64(vreinterpretq_f64_m128d(a)), 0);
++#else
++    __m128d rnd = _mm_round_pd(a, _MM_FROUND_CUR_DIRECTION);
++    double ret = ((double *) &rnd)[0];
++    return (int32_t) ret;
++#endif
++}
++
++// Convert the lower double-precision (64-bit) floating-point element in a to a
++// 64-bit integer, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsd_si64
++FORCE_INLINE int64_t _mm_cvtsd_si64(__m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return (int64_t) vgetq_lane_f64(vrndiq_f64(vreinterpretq_f64_m128d(a)), 0);
++#else
++    __m128d rnd = _mm_round_pd(a, _MM_FROUND_CUR_DIRECTION);
++    double ret = ((double *) &rnd)[0];
++    return (int64_t) ret;
++#endif
++}
++
++// Convert the lower double-precision (64-bit) floating-point element in a to a
++// 64-bit integer, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsd_si64x
++#define _mm_cvtsd_si64x _mm_cvtsd_si64
++
++// Convert the lower double-precision (64-bit) floating-point element in b to a
++// single-precision (32-bit) floating-point element, store the result in the
++// lower element of dst, and copy the upper 3 packed elements from a to the
++// upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsd_ss
++FORCE_INLINE __m128 _mm_cvtsd_ss(__m128 a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128_f32(vsetq_lane_f32(
++        vget_lane_f32(vcvt_f32_f64(vreinterpretq_f64_m128d(b)), 0),
++        vreinterpretq_f32_m128(a), 0));
++#else
++    return vreinterpretq_m128_f32(vsetq_lane_f32((float) ((double *) &b)[0],
++                                                 vreinterpretq_f32_m128(a), 0));
++#endif
++}
++
++// Copy the lower 32-bit integer in a to dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsi128_si32
++FORCE_INLINE int _mm_cvtsi128_si32(__m128i a)
++{
++    return vgetq_lane_s32(vreinterpretq_s32_m128i(a), 0);
++}
++
++// Copy the lower 64-bit integer in a to dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsi128_si64
++FORCE_INLINE int64_t _mm_cvtsi128_si64(__m128i a)
++{
++    return vgetq_lane_s64(vreinterpretq_s64_m128i(a), 0);
++}
++
++// Copy the lower 64-bit integer in a to dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsi128_si64x
++#define _mm_cvtsi128_si64x(a) _mm_cvtsi128_si64(a)
++
++// Convert the signed 32-bit integer b to a double-precision (64-bit)
++// floating-point element, store the result in the lower element of dst, and
++// copy the upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsi32_sd
++FORCE_INLINE __m128d _mm_cvtsi32_sd(__m128d a, int32_t b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vsetq_lane_f64((double) b, vreinterpretq_f64_m128d(a), 0));
++#else
++    double bf = (double) b;
++    return vreinterpretq_m128d_s64(
++        vsetq_lane_s64(*(int64_t *) &bf, vreinterpretq_s64_m128d(a), 0));
++#endif
++}
++
++// Copy the lower 64-bit integer in a to dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsi128_si64x
++#define _mm_cvtsi128_si64x(a) _mm_cvtsi128_si64(a)
++
++// Copy 32-bit integer a to the lower elements of dst, and zero the upper
++// elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsi32_si128
++FORCE_INLINE __m128i _mm_cvtsi32_si128(int a)
++{
++    return vreinterpretq_m128i_s32(vsetq_lane_s32(a, vdupq_n_s32(0), 0));
++}
++
++// Convert the signed 64-bit integer b to a double-precision (64-bit)
++// floating-point element, store the result in the lower element of dst, and
++// copy the upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsi64_sd
++FORCE_INLINE __m128d _mm_cvtsi64_sd(__m128d a, int64_t b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vsetq_lane_f64((double) b, vreinterpretq_f64_m128d(a), 0));
++#else
++    double bf = (double) b;
++    return vreinterpretq_m128d_s64(
++        vsetq_lane_s64(*(int64_t *) &bf, vreinterpretq_s64_m128d(a), 0));
++#endif
++}
++
++// Copy 64-bit integer a to the lower element of dst, and zero the upper
++// element.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsi64_si128
++FORCE_INLINE __m128i _mm_cvtsi64_si128(int64_t a)
++{
++    return vreinterpretq_m128i_s64(vsetq_lane_s64(a, vdupq_n_s64(0), 0));
++}
++
++// Copy 64-bit integer a to the lower element of dst, and zero the upper
++// element.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsi64x_si128
++#define _mm_cvtsi64x_si128(a) _mm_cvtsi64_si128(a)
++
++// Convert the signed 64-bit integer b to a double-precision (64-bit)
++// floating-point element, store the result in the lower element of dst, and
++// copy the upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtsi64x_sd
++#define _mm_cvtsi64x_sd(a, b) _mm_cvtsi64_sd(a, b)
++
++// Convert the lower single-precision (32-bit) floating-point element in b to a
++// double-precision (64-bit) floating-point element, store the result in the
++// lower element of dst, and copy the upper element from a to the upper element
++// of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtss_sd
++FORCE_INLINE __m128d _mm_cvtss_sd(__m128d a, __m128 b)
++{
++    double d = (double) vgetq_lane_f32(vreinterpretq_f32_m128(b), 0);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vsetq_lane_f64(d, vreinterpretq_f64_m128d(a), 0));
++#else
++    return vreinterpretq_m128d_s64(
++        vsetq_lane_s64(*(int64_t *) &d, vreinterpretq_s64_m128d(a), 0));
++#endif
++}
++
++// Convert packed double-precision (64-bit) floating-point elements in a to
++// packed 32-bit integers with truncation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvttpd_epi32
++FORCE_INLINE __m128i _mm_cvttpd_epi32(__m128d a)
++{
++    double a0 = ((double *) &a)[0];
++    double a1 = ((double *) &a)[1];
++    return _mm_set_epi32(0, 0, (int32_t) a1, (int32_t) a0);
++}
++
++// Convert packed double-precision (64-bit) floating-point elements in a to
++// packed 32-bit integers with truncation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvttpd_pi32
++FORCE_INLINE __m64 _mm_cvttpd_pi32(__m128d a)
++{
++    double a0 = ((double *) &a)[0];
++    double a1 = ((double *) &a)[1];
++    int32_t ALIGN_STRUCT(16) data[2] = {(int32_t) a0, (int32_t) a1};
++    return vreinterpret_m64_s32(vld1_s32(data));
++}
++
++// Convert packed single-precision (32-bit) floating-point elements in a to
++// packed 32-bit integers with truncation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvttps_epi32
++FORCE_INLINE __m128i _mm_cvttps_epi32(__m128 a)
++{
++    return vreinterpretq_m128i_s32(vcvtq_s32_f32(vreinterpretq_f32_m128(a)));
++}
++
++// Convert the lower double-precision (64-bit) floating-point element in a to a
++// 32-bit integer with truncation, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvttsd_si32
++FORCE_INLINE int32_t _mm_cvttsd_si32(__m128d a)
++{
++    double ret = *((double *) &a);
++    return (int32_t) ret;
++}
++
++// Convert the lower double-precision (64-bit) floating-point element in a to a
++// 64-bit integer with truncation, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvttsd_si64
++FORCE_INLINE int64_t _mm_cvttsd_si64(__m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vgetq_lane_s64(vcvtq_s64_f64(vreinterpretq_f64_m128d(a)), 0);
++#else
++    double ret = *((double *) &a);
++    return (int64_t) ret;
++#endif
++}
++
++// Convert the lower double-precision (64-bit) floating-point element in a to a
++// 64-bit integer with truncation, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvttsd_si64x
++#define _mm_cvttsd_si64x(a) _mm_cvttsd_si64(a)
++
++// Divide packed double-precision (64-bit) floating-point elements in a by
++// packed elements in b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_div_pd
++FORCE_INLINE __m128d _mm_div_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vdivq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#else
++    double *da = (double *) &a;
++    double *db = (double *) &b;
++    double c[2];
++    c[0] = da[0] / db[0];
++    c[1] = da[1] / db[1];
++    return vld1q_f32((float32_t *) c);
++#endif
++}
++
++// Divide the lower double-precision (64-bit) floating-point element in a by the
++// lower double-precision (64-bit) floating-point element in b, store the result
++// in the lower element of dst, and copy the upper element from a to the upper
++// element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_div_sd
++FORCE_INLINE __m128d _mm_div_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    float64x2_t tmp =
++        vdivq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b));
++    return vreinterpretq_m128d_f64(
++        vsetq_lane_f64(vgetq_lane_f64(vreinterpretq_f64_m128d(a), 1), tmp, 1));
++#else
++    return _mm_move_sd(a, _mm_div_pd(a, b));
++#endif
++}
++
++// Extract a 16-bit integer from a, selected with imm8, and store the result in
++// the lower element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_extract_epi16
++// FORCE_INLINE int _mm_extract_epi16(__m128i a, __constrange(0,8) int imm)
++#define _mm_extract_epi16(a, imm) \
++    vgetq_lane_u16(vreinterpretq_u16_m128i(a), (imm))
++
++// Copy a to dst, and insert the 16-bit integer i into dst at the location
++// specified by imm8.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_insert_epi16
++// FORCE_INLINE __m128i _mm_insert_epi16(__m128i a, int b,
++//                                       __constrange(0,8) int imm)
++#define _mm_insert_epi16(a, b, imm) \
++    vreinterpretq_m128i_s16(        \
++        vsetq_lane_s16((b), vreinterpretq_s16_m128i(a), (imm)))
++
++// Load 128-bits (composed of 2 packed double-precision (64-bit) floating-point
++// elements) from memory into dst. mem_addr must be aligned on a 16-byte
++// boundary or a general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_load_pd
++FORCE_INLINE __m128d _mm_load_pd(const double *p)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(vld1q_f64(p));
++#else
++    const float *fp = (const float *) p;
++    float ALIGN_STRUCT(16) data[4] = {fp[0], fp[1], fp[2], fp[3]};
++    return vreinterpretq_m128d_f32(vld1q_f32(data));
++#endif
++}
++
++// Load a double-precision (64-bit) floating-point element from memory into both
++// elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_load_pd1
++#define _mm_load_pd1 _mm_load1_pd
++
++// Load a double-precision (64-bit) floating-point element from memory into the
++// lower of dst, and zero the upper element. mem_addr does not need to be
++// aligned on any particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_load_sd
++FORCE_INLINE __m128d _mm_load_sd(const double *p)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(vsetq_lane_f64(*p, vdupq_n_f64(0), 0));
++#else
++    const float *fp = (const float *) p;
++    float ALIGN_STRUCT(16) data[4] = {fp[0], fp[1], 0, 0};
++    return vreinterpretq_m128d_f32(vld1q_f32(data));
++#endif
++}
++
++// Load 128-bits of integer data from memory into dst. mem_addr must be aligned
++// on a 16-byte boundary or a general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_load_si128
++FORCE_INLINE __m128i _mm_load_si128(const __m128i *p)
++{
++    return vreinterpretq_m128i_s32(vld1q_s32((const int32_t *) p));
++}
++
++// Load a double-precision (64-bit) floating-point element from memory into both
++// elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_load1_pd
++FORCE_INLINE __m128d _mm_load1_pd(const double *p)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(vld1q_dup_f64(p));
++#else
++    return vreinterpretq_m128d_s64(vdupq_n_s64(*(const int64_t *) p));
++#endif
++}
++
++// Load a double-precision (64-bit) floating-point element from memory into the
++// upper element of dst, and copy the lower element from a to dst. mem_addr does
++// not need to be aligned on any particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadh_pd
++FORCE_INLINE __m128d _mm_loadh_pd(__m128d a, const double *p)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vcombine_f64(vget_low_f64(vreinterpretq_f64_m128d(a)), vld1_f64(p)));
++#else
++    return vreinterpretq_m128d_f32(vcombine_f32(
++        vget_low_f32(vreinterpretq_f32_m128d(a)), vld1_f32((const float *) p)));
++#endif
++}
++
++// Load 64-bit integer from memory into the first element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadl_epi64
++FORCE_INLINE __m128i _mm_loadl_epi64(__m128i const *p)
++{
++    /* Load the lower 64 bits of the value pointed to by p into the
++     * lower 64 bits of the result, zeroing the upper 64 bits of the result.
++     */
++    return vreinterpretq_m128i_s32(
++        vcombine_s32(vld1_s32((int32_t const *) p), vcreate_s32(0)));
++}
++
++// Load a double-precision (64-bit) floating-point element from memory into the
++// lower element of dst, and copy the upper element from a to dst. mem_addr does
++// not need to be aligned on any particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadl_pd
++FORCE_INLINE __m128d _mm_loadl_pd(__m128d a, const double *p)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vcombine_f64(vld1_f64(p), vget_high_f64(vreinterpretq_f64_m128d(a))));
++#else
++    return vreinterpretq_m128d_f32(
++        vcombine_f32(vld1_f32((const float *) p),
++                     vget_high_f32(vreinterpretq_f32_m128d(a))));
++#endif
++}
++
++// Load 2 double-precision (64-bit) floating-point elements from memory into dst
++// in reverse order. mem_addr must be aligned on a 16-byte boundary or a
++// general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadr_pd
++FORCE_INLINE __m128d _mm_loadr_pd(const double *p)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    float64x2_t v = vld1q_f64(p);
++    return vreinterpretq_m128d_f64(vextq_f64(v, v, 1));
++#else
++    int64x2_t v = vld1q_s64((const int64_t *) p);
++    return vreinterpretq_m128d_s64(vextq_s64(v, v, 1));
++#endif
++}
++
++// Loads two double-precision from unaligned memory, floating-point values.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadu_pd
++FORCE_INLINE __m128d _mm_loadu_pd(const double *p)
++{
++    return _mm_load_pd(p);
++}
++
++// Load 128-bits of integer data from memory into dst. mem_addr does not need to
++// be aligned on any particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadu_si128
++FORCE_INLINE __m128i _mm_loadu_si128(const __m128i *p)
++{
++    return vreinterpretq_m128i_s32(vld1q_s32((const int32_t *) p));
++}
++
++// Load unaligned 32-bit integer from memory into the first element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loadu_si32
++FORCE_INLINE __m128i _mm_loadu_si32(const void *p)
++{
++    return vreinterpretq_m128i_s32(
++        vsetq_lane_s32(*(const int32_t *) p, vdupq_n_s32(0), 0));
++}
++
++// Multiply packed signed 16-bit integers in a and b, producing intermediate
++// signed 32-bit integers. Horizontally add adjacent pairs of intermediate
++// 32-bit integers, and pack the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_madd_epi16
++FORCE_INLINE __m128i _mm_madd_epi16(__m128i a, __m128i b)
++{
++    int32x4_t low = vmull_s16(vget_low_s16(vreinterpretq_s16_m128i(a)),
++                              vget_low_s16(vreinterpretq_s16_m128i(b)));
++#if defined(__aarch64__) || defined(_M_ARM64)
++    int32x4_t high =
++        vmull_high_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b));
++
++    return vreinterpretq_m128i_s32(vpaddq_s32(low, high));
++#else
++    int32x4_t high = vmull_s16(vget_high_s16(vreinterpretq_s16_m128i(a)),
++                               vget_high_s16(vreinterpretq_s16_m128i(b)));
++
++    int32x2_t low_sum = vpadd_s32(vget_low_s32(low), vget_high_s32(low));
++    int32x2_t high_sum = vpadd_s32(vget_low_s32(high), vget_high_s32(high));
++
++    return vreinterpretq_m128i_s32(vcombine_s32(low_sum, high_sum));
++#endif
++}
++
++// Conditionally store 8-bit integer elements from a into memory using mask
++// (elements are not stored when the highest bit is not set in the corresponding
++// element) and a non-temporal memory hint. mem_addr does not need to be aligned
++// on any particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_maskmoveu_si128
++FORCE_INLINE void _mm_maskmoveu_si128(__m128i a, __m128i mask, char *mem_addr)
++{
++    int8x16_t shr_mask = vshrq_n_s8(vreinterpretq_s8_m128i(mask), 7);
++    __m128 b = _mm_load_ps((const float *) mem_addr);
++    int8x16_t masked =
++        vbslq_s8(vreinterpretq_u8_s8(shr_mask), vreinterpretq_s8_m128i(a),
++                 vreinterpretq_s8_m128(b));
++    vst1q_s8((int8_t *) mem_addr, masked);
++}
++
++// Compare packed signed 16-bit integers in a and b, and store packed maximum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_epi16
++FORCE_INLINE __m128i _mm_max_epi16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s16(
++        vmaxq_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b)));
++}
++
++// Compare packed unsigned 8-bit integers in a and b, and store packed maximum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_epu8
++FORCE_INLINE __m128i _mm_max_epu8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u8(
++        vmaxq_u8(vreinterpretq_u8_m128i(a), vreinterpretq_u8_m128i(b)));
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b,
++// and store packed maximum values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_pd
++FORCE_INLINE __m128d _mm_max_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++#if SSE2NEON_PRECISE_MINMAX
++    float64x2_t _a = vreinterpretq_f64_m128d(a);
++    float64x2_t _b = vreinterpretq_f64_m128d(b);
++    return vreinterpretq_m128d_f64(vbslq_f64(vcgtq_f64(_a, _b), _a, _b));
++#else
++    return vreinterpretq_m128d_f64(
++        vmaxq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#endif
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t b1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] = (*(double *) &a0) > (*(double *) &b0) ? a0 : b0;
++    d[1] = (*(double *) &a1) > (*(double *) &b1) ? a1 : b1;
++
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b, store the maximum value in the lower element of dst, and copy the upper
++// element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_sd
++FORCE_INLINE __m128d _mm_max_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return _mm_move_sd(a, _mm_max_pd(a, b));
++#else
++    double *da = (double *) &a;
++    double *db = (double *) &b;
++    double c[2] = {da[0] > db[0] ? da[0] : db[0], da[1]};
++    return vreinterpretq_m128d_f32(vld1q_f32((float32_t *) c));
++#endif
++}
++
++// Compare packed signed 16-bit integers in a and b, and store packed minimum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_min_epi16
++FORCE_INLINE __m128i _mm_min_epi16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s16(
++        vminq_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b)));
++}
++
++// Compare packed unsigned 8-bit integers in a and b, and store packed minimum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_min_epu8
++FORCE_INLINE __m128i _mm_min_epu8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u8(
++        vminq_u8(vreinterpretq_u8_m128i(a), vreinterpretq_u8_m128i(b)));
++}
++
++// Compare packed double-precision (64-bit) floating-point elements in a and b,
++// and store packed minimum values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_min_pd
++FORCE_INLINE __m128d _mm_min_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++#if SSE2NEON_PRECISE_MINMAX
++    float64x2_t _a = vreinterpretq_f64_m128d(a);
++    float64x2_t _b = vreinterpretq_f64_m128d(b);
++    return vreinterpretq_m128d_f64(vbslq_f64(vcltq_f64(_a, _b), _a, _b));
++#else
++    return vreinterpretq_m128d_f64(
++        vminq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#endif
++#else
++    uint64_t a0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(a));
++    uint64_t a1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(a));
++    uint64_t b0 = (uint64_t) vget_low_u64(vreinterpretq_u64_m128d(b));
++    uint64_t b1 = (uint64_t) vget_high_u64(vreinterpretq_u64_m128d(b));
++    uint64_t d[2];
++    d[0] = (*(double *) &a0) < (*(double *) &b0) ? a0 : b0;
++    d[1] = (*(double *) &a1) < (*(double *) &b1) ? a1 : b1;
++    return vreinterpretq_m128d_u64(vld1q_u64(d));
++#endif
++}
++
++// Compare the lower double-precision (64-bit) floating-point elements in a and
++// b, store the minimum value in the lower element of dst, and copy the upper
++// element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_min_sd
++FORCE_INLINE __m128d _mm_min_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return _mm_move_sd(a, _mm_min_pd(a, b));
++#else
++    double *da = (double *) &a;
++    double *db = (double *) &b;
++    double c[2] = {da[0] < db[0] ? da[0] : db[0], da[1]};
++    return vreinterpretq_m128d_f32(vld1q_f32((float32_t *) c));
++#endif
++}
++
++// Copy the lower 64-bit integer in a to the lower element of dst, and zero the
++// upper element.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_move_epi64
++FORCE_INLINE __m128i _mm_move_epi64(__m128i a)
++{
++    return vreinterpretq_m128i_s64(
++        vsetq_lane_s64(0, vreinterpretq_s64_m128i(a), 1));
++}
++
++// Move the lower double-precision (64-bit) floating-point element from b to the
++// lower element of dst, and copy the upper element from a to the upper element
++// of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_move_sd
++FORCE_INLINE __m128d _mm_move_sd(__m128d a, __m128d b)
++{
++    return vreinterpretq_m128d_f32(
++        vcombine_f32(vget_low_f32(vreinterpretq_f32_m128d(b)),
++                     vget_high_f32(vreinterpretq_f32_m128d(a))));
++}
++
++// Create mask from the most significant bit of each 8-bit element in a, and
++// store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_movemask_epi8
++FORCE_INLINE int _mm_movemask_epi8(__m128i a)
++{
++    // Use increasingly wide shifts+adds to collect the sign bits
++    // together.
++    // Since the widening shifts would be rather confusing to follow in little
++    // endian, everything will be illustrated in big endian order instead. This
++    // has a different result - the bits would actually be reversed on a big
++    // endian machine.
++
++    // Starting input (only half the elements are shown):
++    // 89 ff 1d c0 00 10 99 33
++    uint8x16_t input = vreinterpretq_u8_m128i(a);
++
++    // Shift out everything but the sign bits with an unsigned shift right.
++    //
++    // Bytes of the vector::
++    // 89 ff 1d c0 00 10 99 33
++    // \  \  \  \  \  \  \  \    high_bits = (uint16x4_t)(input >> 7)
++    //  |  |  |  |  |  |  |  |
++    // 01 01 00 01 00 00 01 00
++    //
++    // Bits of first important lane(s):
++    // 10001001 (89)
++    // \______
++    //        |
++    // 00000001 (01)
++    uint16x8_t high_bits = vreinterpretq_u16_u8(vshrq_n_u8(input, 7));
++
++    // Merge the even lanes together with a 16-bit unsigned shift right + add.
++    // 'xx' represents garbage data which will be ignored in the final result.
++    // In the important bytes, the add functions like a binary OR.
++    //
++    // 01 01 00 01 00 00 01 00
++    //  \_ |  \_ |  \_ |  \_ |   paired16 = (uint32x4_t)(input + (input >> 7))
++    //    \|    \|    \|    \|
++    // xx 03 xx 01 xx 00 xx 02
++    //
++    // 00000001 00000001 (01 01)
++    //        \_______ |
++    //                \|
++    // xxxxxxxx xxxxxx11 (xx 03)
++    uint32x4_t paired16 =
++        vreinterpretq_u32_u16(vsraq_n_u16(high_bits, high_bits, 7));
++
++    // Repeat with a wider 32-bit shift + add.
++    // xx 03 xx 01 xx 00 xx 02
++    //     \____ |     \____ |  paired32 = (uint64x1_t)(paired16 + (paired16 >>
++    //     14))
++    //          \|          \|
++    // xx xx xx 0d xx xx xx 02
++    //
++    // 00000011 00000001 (03 01)
++    //        \\_____ ||
++    //         '----.\||
++    // xxxxxxxx xxxx1101 (xx 0d)
++    uint64x2_t paired32 =
++        vreinterpretq_u64_u32(vsraq_n_u32(paired16, paired16, 14));
++
++    // Last, an even wider 64-bit shift + add to get our result in the low 8 bit
++    // lanes. xx xx xx 0d xx xx xx 02
++    //            \_________ |   paired64 = (uint8x8_t)(paired32 + (paired32 >>
++    //            28))
++    //                      \|
++    // xx xx xx xx xx xx xx d2
++    //
++    // 00001101 00000010 (0d 02)
++    //     \   \___ |  |
++    //      '---.  \|  |
++    // xxxxxxxx 11010010 (xx d2)
++    uint8x16_t paired64 =
++        vreinterpretq_u8_u64(vsraq_n_u64(paired32, paired32, 28));
++
++    // Extract the low 8 bits from each 64-bit lane with 2 8-bit extracts.
++    // xx xx xx xx xx xx xx d2
++    //                      ||  return paired64[0]
++    //                      d2
++    // Note: Little endian would return the correct value 4b (01001011) instead.
++    return vgetq_lane_u8(paired64, 0) | ((int) vgetq_lane_u8(paired64, 8) << 8);
++}
++
++// Set each bit of mask dst based on the most significant bit of the
++// corresponding packed double-precision (64-bit) floating-point element in a.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_movemask_pd
++FORCE_INLINE int _mm_movemask_pd(__m128d a)
++{
++    uint64x2_t input = vreinterpretq_u64_m128d(a);
++    uint64x2_t high_bits = vshrq_n_u64(input, 63);
++    return (int) (vgetq_lane_u64(high_bits, 0) |
++                  (vgetq_lane_u64(high_bits, 1) << 1));
++}
++
++// Copy the lower 64-bit integer in a to dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_movepi64_pi64
++FORCE_INLINE __m64 _mm_movepi64_pi64(__m128i a)
++{
++    return vreinterpret_m64_s64(vget_low_s64(vreinterpretq_s64_m128i(a)));
++}
++
++// Copy the 64-bit integer a to the lower element of dst, and zero the upper
++// element.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_movpi64_epi64
++FORCE_INLINE __m128i _mm_movpi64_epi64(__m64 a)
++{
++    return vreinterpretq_m128i_s64(
++        vcombine_s64(vreinterpret_s64_m64(a), vdup_n_s64(0)));
++}
++
++// Multiply the low unsigned 32-bit integers from each packed 64-bit element in
++// a and b, and store the unsigned 64-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mul_epu32
++FORCE_INLINE __m128i _mm_mul_epu32(__m128i a, __m128i b)
++{
++    // vmull_u32 upcasts instead of masking, so we downcast.
++    uint32x2_t a_lo = vmovn_u64(vreinterpretq_u64_m128i(a));
++    uint32x2_t b_lo = vmovn_u64(vreinterpretq_u64_m128i(b));
++    return vreinterpretq_m128i_u64(vmull_u32(a_lo, b_lo));
++}
++
++// Multiply packed double-precision (64-bit) floating-point elements in a and b,
++// and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mul_pd
++FORCE_INLINE __m128d _mm_mul_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vmulq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#else
++    double *da = (double *) &a;
++    double *db = (double *) &b;
++    double c[2];
++    c[0] = da[0] * db[0];
++    c[1] = da[1] * db[1];
++    return vld1q_f32((float32_t *) c);
++#endif
++}
++
++// Multiply the lower double-precision (64-bit) floating-point element in a and
++// b, store the result in the lower element of dst, and copy the upper element
++// from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=mm_mul_sd
++FORCE_INLINE __m128d _mm_mul_sd(__m128d a, __m128d b)
++{
++    return _mm_move_sd(a, _mm_mul_pd(a, b));
++}
++
++// Multiply the low unsigned 32-bit integers from a and b, and store the
++// unsigned 64-bit result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mul_su32
++FORCE_INLINE __m64 _mm_mul_su32(__m64 a, __m64 b)
++{
++    return vreinterpret_m64_u64(vget_low_u64(
++        vmull_u32(vreinterpret_u32_m64(a), vreinterpret_u32_m64(b))));
++}
++
++// Multiply the packed signed 16-bit integers in a and b, producing intermediate
++// 32-bit integers, and store the high 16 bits of the intermediate integers in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mulhi_epi16
++FORCE_INLINE __m128i _mm_mulhi_epi16(__m128i a, __m128i b)
++{
++    /* FIXME: issue with large values because of result saturation */
++    // int16x8_t ret = vqdmulhq_s16(vreinterpretq_s16_m128i(a),
++    // vreinterpretq_s16_m128i(b)); /* =2*a*b */ return
++    // vreinterpretq_m128i_s16(vshrq_n_s16(ret, 1));
++    int16x4_t a3210 = vget_low_s16(vreinterpretq_s16_m128i(a));
++    int16x4_t b3210 = vget_low_s16(vreinterpretq_s16_m128i(b));
++    int32x4_t ab3210 = vmull_s16(a3210, b3210); /* 3333222211110000 */
++    int16x4_t a7654 = vget_high_s16(vreinterpretq_s16_m128i(a));
++    int16x4_t b7654 = vget_high_s16(vreinterpretq_s16_m128i(b));
++    int32x4_t ab7654 = vmull_s16(a7654, b7654); /* 7777666655554444 */
++    uint16x8x2_t r =
++        vuzpq_u16(vreinterpretq_u16_s32(ab3210), vreinterpretq_u16_s32(ab7654));
++    return vreinterpretq_m128i_u16(r.val[1]);
++}
++
++// Multiply the packed unsigned 16-bit integers in a and b, producing
++// intermediate 32-bit integers, and store the high 16 bits of the intermediate
++// integers in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mulhi_epu16
++FORCE_INLINE __m128i _mm_mulhi_epu16(__m128i a, __m128i b)
++{
++    uint16x4_t a3210 = vget_low_u16(vreinterpretq_u16_m128i(a));
++    uint16x4_t b3210 = vget_low_u16(vreinterpretq_u16_m128i(b));
++    uint32x4_t ab3210 = vmull_u16(a3210, b3210);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    uint32x4_t ab7654 =
++        vmull_high_u16(vreinterpretq_u16_m128i(a), vreinterpretq_u16_m128i(b));
++    uint16x8_t r = vuzp2q_u16(vreinterpretq_u16_u32(ab3210),
++                              vreinterpretq_u16_u32(ab7654));
++    return vreinterpretq_m128i_u16(r);
++#else
++    uint16x4_t a7654 = vget_high_u16(vreinterpretq_u16_m128i(a));
++    uint16x4_t b7654 = vget_high_u16(vreinterpretq_u16_m128i(b));
++    uint32x4_t ab7654 = vmull_u16(a7654, b7654);
++    uint16x8x2_t r =
++        vuzpq_u16(vreinterpretq_u16_u32(ab3210), vreinterpretq_u16_u32(ab7654));
++    return vreinterpretq_m128i_u16(r.val[1]);
++#endif
++}
++
++// Multiply the packed 16-bit integers in a and b, producing intermediate 32-bit
++// integers, and store the low 16 bits of the intermediate integers in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mullo_epi16
++FORCE_INLINE __m128i _mm_mullo_epi16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s16(
++        vmulq_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b)));
++}
++
++// Compute the bitwise OR of packed double-precision (64-bit) floating-point
++// elements in a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=mm_or_pd
++FORCE_INLINE __m128d _mm_or_pd(__m128d a, __m128d b)
++{
++    return vreinterpretq_m128d_s64(
++        vorrq_s64(vreinterpretq_s64_m128d(a), vreinterpretq_s64_m128d(b)));
++}
++
++// Compute the bitwise OR of 128 bits (representing integer data) in a and b,
++// and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_or_si128
++FORCE_INLINE __m128i _mm_or_si128(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s32(
++        vorrq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++}
++
++// Convert packed signed 16-bit integers from a and b to packed 8-bit integers
++// using signed saturation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_packs_epi16
++FORCE_INLINE __m128i _mm_packs_epi16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s8(
++        vcombine_s8(vqmovn_s16(vreinterpretq_s16_m128i(a)),
++                    vqmovn_s16(vreinterpretq_s16_m128i(b))));
++}
++
++// Convert packed signed 32-bit integers from a and b to packed 16-bit integers
++// using signed saturation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_packs_epi32
++FORCE_INLINE __m128i _mm_packs_epi32(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s16(
++        vcombine_s16(vqmovn_s32(vreinterpretq_s32_m128i(a)),
++                     vqmovn_s32(vreinterpretq_s32_m128i(b))));
++}
++
++// Convert packed signed 16-bit integers from a and b to packed 8-bit integers
++// using unsigned saturation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_packus_epi16
++FORCE_INLINE __m128i _mm_packus_epi16(const __m128i a, const __m128i b)
++{
++    return vreinterpretq_m128i_u8(
++        vcombine_u8(vqmovun_s16(vreinterpretq_s16_m128i(a)),
++                    vqmovun_s16(vreinterpretq_s16_m128i(b))));
++}
++
++// Pause the processor. This is typically used in spin-wait loops and depending
++// on the x86 processor typical values are in the 40-100 cycle range. The
++// 'yield' instruction isn't a good fit because it's effectively a nop on most
++// Arm cores. Experience with several databases has shown has shown an 'isb' is
++// a reasonable approximation.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_pause
++FORCE_INLINE void _mm_pause(void)
++{
++#if defined(_MSC_VER)
++    __isb(_ARM64_BARRIER_SY);
++#else
++    __asm__ __volatile__("isb\n");
++#endif
++}
++
++// Compute the absolute differences of packed unsigned 8-bit integers in a and
++// b, then horizontally sum each consecutive 8 differences to produce two
++// unsigned 16-bit integers, and pack these unsigned 16-bit integers in the low
++// 16 bits of 64-bit elements in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sad_epu8
++FORCE_INLINE __m128i _mm_sad_epu8(__m128i a, __m128i b)
++{
++    uint16x8_t t = vpaddlq_u8(vabdq_u8((uint8x16_t) a, (uint8x16_t) b));
++    return vreinterpretq_m128i_u64(vpaddlq_u32(vpaddlq_u16(t)));
++}
++
++// Set packed 16-bit integers in dst with the supplied values.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set_epi16
++FORCE_INLINE __m128i _mm_set_epi16(short i7,
++                                   short i6,
++                                   short i5,
++                                   short i4,
++                                   short i3,
++                                   short i2,
++                                   short i1,
++                                   short i0)
++{
++    int16_t ALIGN_STRUCT(16) data[8] = {i0, i1, i2, i3, i4, i5, i6, i7};
++    return vreinterpretq_m128i_s16(vld1q_s16(data));
++}
++
++// Set packed 32-bit integers in dst with the supplied values.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set_epi32
++FORCE_INLINE __m128i _mm_set_epi32(int i3, int i2, int i1, int i0)
++{
++    int32_t ALIGN_STRUCT(16) data[4] = {i0, i1, i2, i3};
++    return vreinterpretq_m128i_s32(vld1q_s32(data));
++}
++
++// Set packed 64-bit integers in dst with the supplied values.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set_epi64
++FORCE_INLINE __m128i _mm_set_epi64(__m64 i1, __m64 i2)
++{
++    return _mm_set_epi64x(vget_lane_s64(i1, 0), vget_lane_s64(i2, 0));
++}
++
++// Set packed 64-bit integers in dst with the supplied values.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set_epi64x
++FORCE_INLINE __m128i _mm_set_epi64x(int64_t i1, int64_t i2)
++{
++    return vreinterpretq_m128i_s64(
++        vcombine_s64(vcreate_s64(i2), vcreate_s64(i1)));
++}
++
++// Set packed 8-bit integers in dst with the supplied values.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set_epi8
++FORCE_INLINE __m128i _mm_set_epi8(signed char b15,
++                                  signed char b14,
++                                  signed char b13,
++                                  signed char b12,
++                                  signed char b11,
++                                  signed char b10,
++                                  signed char b9,
++                                  signed char b8,
++                                  signed char b7,
++                                  signed char b6,
++                                  signed char b5,
++                                  signed char b4,
++                                  signed char b3,
++                                  signed char b2,
++                                  signed char b1,
++                                  signed char b0)
++{
++    int8_t ALIGN_STRUCT(16)
++        data[16] = {(int8_t) b0,  (int8_t) b1,  (int8_t) b2,  (int8_t) b3,
++                    (int8_t) b4,  (int8_t) b5,  (int8_t) b6,  (int8_t) b7,
++                    (int8_t) b8,  (int8_t) b9,  (int8_t) b10, (int8_t) b11,
++                    (int8_t) b12, (int8_t) b13, (int8_t) b14, (int8_t) b15};
++    return (__m128i) vld1q_s8(data);
++}
++
++// Set packed double-precision (64-bit) floating-point elements in dst with the
++// supplied values.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set_pd
++FORCE_INLINE __m128d _mm_set_pd(double e1, double e0)
++{
++    double ALIGN_STRUCT(16) data[2] = {e0, e1};
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(vld1q_f64((float64_t *) data));
++#else
++    return vreinterpretq_m128d_f32(vld1q_f32((float32_t *) data));
++#endif
++}
++
++// Broadcast double-precision (64-bit) floating-point value a to all elements of
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set_pd1
++#define _mm_set_pd1 _mm_set1_pd
++
++// Copy double-precision (64-bit) floating-point element a to the lower element
++// of dst, and zero the upper element.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set_sd
++FORCE_INLINE __m128d _mm_set_sd(double a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(vsetq_lane_f64(a, vdupq_n_f64(0), 0));
++#else
++    return _mm_set_pd(0, a);
++#endif
++}
++
++// Broadcast 16-bit integer a to all elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set1_epi16
++FORCE_INLINE __m128i _mm_set1_epi16(short w)
++{
++    return vreinterpretq_m128i_s16(vdupq_n_s16(w));
++}
++
++// Broadcast 32-bit integer a to all elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set1_epi32
++FORCE_INLINE __m128i _mm_set1_epi32(int _i)
++{
++    return vreinterpretq_m128i_s32(vdupq_n_s32(_i));
++}
++
++// Broadcast 64-bit integer a to all elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set1_epi64
++FORCE_INLINE __m128i _mm_set1_epi64(__m64 _i)
++{
++    return vreinterpretq_m128i_s64(vdupq_lane_s64(_i, 0));
++}
++
++// Broadcast 64-bit integer a to all elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set1_epi64x
++FORCE_INLINE __m128i _mm_set1_epi64x(int64_t _i)
++{
++    return vreinterpretq_m128i_s64(vdupq_n_s64(_i));
++}
++
++// Broadcast 8-bit integer a to all elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set1_epi8
++FORCE_INLINE __m128i _mm_set1_epi8(signed char w)
++{
++    return vreinterpretq_m128i_s8(vdupq_n_s8(w));
++}
++
++// Broadcast double-precision (64-bit) floating-point value a to all elements of
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_set1_pd
++FORCE_INLINE __m128d _mm_set1_pd(double d)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(vdupq_n_f64(d));
++#else
++    return vreinterpretq_m128d_s64(vdupq_n_s64(*(int64_t *) &d));
++#endif
++}
++
++// Set packed 16-bit integers in dst with the supplied values in reverse order.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_setr_epi16
++FORCE_INLINE __m128i _mm_setr_epi16(short w0,
++                                    short w1,
++                                    short w2,
++                                    short w3,
++                                    short w4,
++                                    short w5,
++                                    short w6,
++                                    short w7)
++{
++    int16_t ALIGN_STRUCT(16) data[8] = {w0, w1, w2, w3, w4, w5, w6, w7};
++    return vreinterpretq_m128i_s16(vld1q_s16((int16_t *) data));
++}
++
++// Set packed 32-bit integers in dst with the supplied values in reverse order.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_setr_epi32
++FORCE_INLINE __m128i _mm_setr_epi32(int i3, int i2, int i1, int i0)
++{
++    int32_t ALIGN_STRUCT(16) data[4] = {i3, i2, i1, i0};
++    return vreinterpretq_m128i_s32(vld1q_s32(data));
++}
++
++// Set packed 64-bit integers in dst with the supplied values in reverse order.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_setr_epi64
++FORCE_INLINE __m128i _mm_setr_epi64(__m64 e1, __m64 e0)
++{
++    return vreinterpretq_m128i_s64(vcombine_s64(e1, e0));
++}
++
++// Set packed 8-bit integers in dst with the supplied values in reverse order.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_setr_epi8
++FORCE_INLINE __m128i _mm_setr_epi8(signed char b0,
++                                   signed char b1,
++                                   signed char b2,
++                                   signed char b3,
++                                   signed char b4,
++                                   signed char b5,
++                                   signed char b6,
++                                   signed char b7,
++                                   signed char b8,
++                                   signed char b9,
++                                   signed char b10,
++                                   signed char b11,
++                                   signed char b12,
++                                   signed char b13,
++                                   signed char b14,
++                                   signed char b15)
++{
++    int8_t ALIGN_STRUCT(16)
++        data[16] = {(int8_t) b0,  (int8_t) b1,  (int8_t) b2,  (int8_t) b3,
++                    (int8_t) b4,  (int8_t) b5,  (int8_t) b6,  (int8_t) b7,
++                    (int8_t) b8,  (int8_t) b9,  (int8_t) b10, (int8_t) b11,
++                    (int8_t) b12, (int8_t) b13, (int8_t) b14, (int8_t) b15};
++    return (__m128i) vld1q_s8(data);
++}
++
++// Set packed double-precision (64-bit) floating-point elements in dst with the
++// supplied values in reverse order.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_setr_pd
++FORCE_INLINE __m128d _mm_setr_pd(double e1, double e0)
++{
++    return _mm_set_pd(e0, e1);
++}
++
++// Return vector of type __m128d with all elements set to zero.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_setzero_pd
++FORCE_INLINE __m128d _mm_setzero_pd(void)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(vdupq_n_f64(0));
++#else
++    return vreinterpretq_m128d_f32(vdupq_n_f32(0));
++#endif
++}
++
++// Return vector of type __m128i with all elements set to zero.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_setzero_si128
++FORCE_INLINE __m128i _mm_setzero_si128(void)
++{
++    return vreinterpretq_m128i_s32(vdupq_n_s32(0));
++}
++
++// Shuffle 32-bit integers in a using the control in imm8, and store the results
++// in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_shuffle_epi32
++// FORCE_INLINE __m128i _mm_shuffle_epi32(__m128i a,
++//                                        __constrange(0,255) int imm)
++#if defined(_sse2neon_shuffle)
++#define _mm_shuffle_epi32(a, imm)                                            \
++    __extension__({                                                          \
++        int32x4_t _input = vreinterpretq_s32_m128i(a);                       \
++        int32x4_t _shuf =                                                    \
++            vshuffleq_s32(_input, _input, (imm) & (0x3), ((imm) >> 2) & 0x3, \
++                          ((imm) >> 4) & 0x3, ((imm) >> 6) & 0x3);           \
++        vreinterpretq_m128i_s32(_shuf);                                      \
++    })
++#else  // generic
++#define _mm_shuffle_epi32(a, imm)                           \
++    _sse2neon_define1(                                      \
++        __m128i, a, __m128i ret; switch (imm) {             \
++            case _MM_SHUFFLE(1, 0, 3, 2):                   \
++                ret = _mm_shuffle_epi_1032(_a);             \
++                break;                                      \
++            case _MM_SHUFFLE(2, 3, 0, 1):                   \
++                ret = _mm_shuffle_epi_2301(_a);             \
++                break;                                      \
++            case _MM_SHUFFLE(0, 3, 2, 1):                   \
++                ret = _mm_shuffle_epi_0321(_a);             \
++                break;                                      \
++            case _MM_SHUFFLE(2, 1, 0, 3):                   \
++                ret = _mm_shuffle_epi_2103(_a);             \
++                break;                                      \
++            case _MM_SHUFFLE(1, 0, 1, 0):                   \
++                ret = _mm_shuffle_epi_1010(_a);             \
++                break;                                      \
++            case _MM_SHUFFLE(1, 0, 0, 1):                   \
++                ret = _mm_shuffle_epi_1001(_a);             \
++                break;                                      \
++            case _MM_SHUFFLE(0, 1, 0, 1):                   \
++                ret = _mm_shuffle_epi_0101(_a);             \
++                break;                                      \
++            case _MM_SHUFFLE(2, 2, 1, 1):                   \
++                ret = _mm_shuffle_epi_2211(_a);             \
++                break;                                      \
++            case _MM_SHUFFLE(0, 1, 2, 2):                   \
++                ret = _mm_shuffle_epi_0122(_a);             \
++                break;                                      \
++            case _MM_SHUFFLE(3, 3, 3, 2):                   \
++                ret = _mm_shuffle_epi_3332(_a);             \
++                break;                                      \
++            case _MM_SHUFFLE(0, 0, 0, 0):                   \
++                ret = _mm_shuffle_epi32_splat(_a, 0);       \
++                break;                                      \
++            case _MM_SHUFFLE(1, 1, 1, 1):                   \
++                ret = _mm_shuffle_epi32_splat(_a, 1);       \
++                break;                                      \
++            case _MM_SHUFFLE(2, 2, 2, 2):                   \
++                ret = _mm_shuffle_epi32_splat(_a, 2);       \
++                break;                                      \
++            case _MM_SHUFFLE(3, 3, 3, 3):                   \
++                ret = _mm_shuffle_epi32_splat(_a, 3);       \
++                break;                                      \
++            default:                                        \
++                ret = _mm_shuffle_epi32_default(_a, (imm)); \
++                break;                                      \
++        } _sse2neon_return(ret);)
++#endif
++
++// Shuffle double-precision (64-bit) floating-point elements using the control
++// in imm8, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_shuffle_pd
++#ifdef _sse2neon_shuffle
++#define _mm_shuffle_pd(a, b, imm8)                                            \
++    vreinterpretq_m128d_s64(                                                  \
++        vshuffleq_s64(vreinterpretq_s64_m128d(a), vreinterpretq_s64_m128d(b), \
++                      imm8 & 0x1, ((imm8 & 0x2) >> 1) + 2))
++#else
++#define _mm_shuffle_pd(a, b, imm8)                                     \
++    _mm_castsi128_pd(_mm_set_epi64x(                                   \
++        vgetq_lane_s64(vreinterpretq_s64_m128d(b), (imm8 & 0x2) >> 1), \
++        vgetq_lane_s64(vreinterpretq_s64_m128d(a), imm8 & 0x1)))
++#endif
++
++// FORCE_INLINE __m128i _mm_shufflehi_epi16(__m128i a,
++//                                          __constrange(0,255) int imm)
++#if defined(_sse2neon_shuffle)
++#define _mm_shufflehi_epi16(a, imm)                                           \
++    __extension__({                                                           \
++        int16x8_t _input = vreinterpretq_s16_m128i(a);                        \
++        int16x8_t _shuf =                                                     \
++            vshuffleq_s16(_input, _input, 0, 1, 2, 3, ((imm) & (0x3)) + 4,    \
++                          (((imm) >> 2) & 0x3) + 4, (((imm) >> 4) & 0x3) + 4, \
++                          (((imm) >> 6) & 0x3) + 4);                          \
++        vreinterpretq_m128i_s16(_shuf);                                       \
++    })
++#else  // generic
++#define _mm_shufflehi_epi16(a, imm) _mm_shufflehi_epi16_function((a), (imm))
++#endif
++
++// FORCE_INLINE __m128i _mm_shufflelo_epi16(__m128i a,
++//                                          __constrange(0,255) int imm)
++#if defined(_sse2neon_shuffle)
++#define _mm_shufflelo_epi16(a, imm)                                  \
++    __extension__({                                                  \
++        int16x8_t _input = vreinterpretq_s16_m128i(a);               \
++        int16x8_t _shuf = vshuffleq_s16(                             \
++            _input, _input, ((imm) & (0x3)), (((imm) >> 2) & 0x3),   \
++            (((imm) >> 4) & 0x3), (((imm) >> 6) & 0x3), 4, 5, 6, 7); \
++        vreinterpretq_m128i_s16(_shuf);                              \
++    })
++#else  // generic
++#define _mm_shufflelo_epi16(a, imm) _mm_shufflelo_epi16_function((a), (imm))
++#endif
++
++// Shift packed 16-bit integers in a left by count while shifting in zeros, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sll_epi16
++FORCE_INLINE __m128i _mm_sll_epi16(__m128i a, __m128i count)
++{
++    uint64_t c = vreinterpretq_nth_u64_m128i(count, 0);
++    if (_sse2neon_unlikely(c & ~15))
++        return _mm_setzero_si128();
++
++    int16x8_t vc = vdupq_n_s16((int16_t) c);
++    return vreinterpretq_m128i_s16(vshlq_s16(vreinterpretq_s16_m128i(a), vc));
++}
++
++// Shift packed 32-bit integers in a left by count while shifting in zeros, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sll_epi32
++FORCE_INLINE __m128i _mm_sll_epi32(__m128i a, __m128i count)
++{
++    uint64_t c = vreinterpretq_nth_u64_m128i(count, 0);
++    if (_sse2neon_unlikely(c & ~31))
++        return _mm_setzero_si128();
++
++    int32x4_t vc = vdupq_n_s32((int32_t) c);
++    return vreinterpretq_m128i_s32(vshlq_s32(vreinterpretq_s32_m128i(a), vc));
++}
++
++// Shift packed 64-bit integers in a left by count while shifting in zeros, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sll_epi64
++FORCE_INLINE __m128i _mm_sll_epi64(__m128i a, __m128i count)
++{
++    uint64_t c = vreinterpretq_nth_u64_m128i(count, 0);
++    if (_sse2neon_unlikely(c & ~63))
++        return _mm_setzero_si128();
++
++    int64x2_t vc = vdupq_n_s64((int64_t) c);
++    return vreinterpretq_m128i_s64(vshlq_s64(vreinterpretq_s64_m128i(a), vc));
++}
++
++// Shift packed 16-bit integers in a left by imm8 while shifting in zeros, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_slli_epi16
++FORCE_INLINE __m128i _mm_slli_epi16(__m128i a, int imm)
++{
++    if (_sse2neon_unlikely(imm & ~15))
++        return _mm_setzero_si128();
++    return vreinterpretq_m128i_s16(
++        vshlq_s16(vreinterpretq_s16_m128i(a), vdupq_n_s16(imm)));
++}
++
++// Shift packed 32-bit integers in a left by imm8 while shifting in zeros, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_slli_epi32
++FORCE_INLINE __m128i _mm_slli_epi32(__m128i a, int imm)
++{
++    if (_sse2neon_unlikely(imm & ~31))
++        return _mm_setzero_si128();
++    return vreinterpretq_m128i_s32(
++        vshlq_s32(vreinterpretq_s32_m128i(a), vdupq_n_s32(imm)));
++}
++
++// Shift packed 64-bit integers in a left by imm8 while shifting in zeros, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_slli_epi64
++FORCE_INLINE __m128i _mm_slli_epi64(__m128i a, int imm)
++{
++    if (_sse2neon_unlikely(imm & ~63))
++        return _mm_setzero_si128();
++    return vreinterpretq_m128i_s64(
++        vshlq_s64(vreinterpretq_s64_m128i(a), vdupq_n_s64(imm)));
++}
++
++// Shift a left by imm8 bytes while shifting in zeros, and store the results in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_slli_si128
++#define _mm_slli_si128(a, imm)                                              \
++    _sse2neon_define1(                                                      \
++        __m128i, a, int8x16_t ret;                                          \
++        if (_sse2neon_unlikely(imm == 0)) ret = vreinterpretq_s8_m128i(_a); \
++        else if (_sse2neon_unlikely((imm) & ~15)) ret = vdupq_n_s8(0);      \
++        else ret = vextq_s8(vdupq_n_s8(0), vreinterpretq_s8_m128i(_a),      \
++                            ((imm <= 0 || imm > 15) ? 0 : (16 - imm)));     \
++        _sse2neon_return(vreinterpretq_m128i_s8(ret));)
++
++// Compute the square root of packed double-precision (64-bit) floating-point
++// elements in a, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sqrt_pd
++FORCE_INLINE __m128d _mm_sqrt_pd(__m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(vsqrtq_f64(vreinterpretq_f64_m128d(a)));
++#else
++    double a0 = sqrt(((double *) &a)[0]);
++    double a1 = sqrt(((double *) &a)[1]);
++    return _mm_set_pd(a1, a0);
++#endif
++}
++
++// Compute the square root of the lower double-precision (64-bit) floating-point
++// element in b, store the result in the lower element of dst, and copy the
++// upper element from a to the upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sqrt_sd
++FORCE_INLINE __m128d _mm_sqrt_sd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return _mm_move_sd(a, _mm_sqrt_pd(b));
++#else
++    return _mm_set_pd(((double *) &a)[1], sqrt(((double *) &b)[0]));
++#endif
++}
++
++// Shift packed 16-bit integers in a right by count while shifting in sign bits,
++// and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sra_epi16
++FORCE_INLINE __m128i _mm_sra_epi16(__m128i a, __m128i count)
++{
++    int64_t c = vgetq_lane_s64(count, 0);
++    if (_sse2neon_unlikely(c & ~15))
++        return _mm_cmplt_epi16(a, _mm_setzero_si128());
++    return vreinterpretq_m128i_s16(
++        vshlq_s16((int16x8_t) a, vdupq_n_s16((int) -c)));
++}
++
++// Shift packed 32-bit integers in a right by count while shifting in sign bits,
++// and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sra_epi32
++FORCE_INLINE __m128i _mm_sra_epi32(__m128i a, __m128i count)
++{
++    int64_t c = vgetq_lane_s64(count, 0);
++    if (_sse2neon_unlikely(c & ~31))
++        return _mm_cmplt_epi32(a, _mm_setzero_si128());
++    return vreinterpretq_m128i_s32(
++        vshlq_s32((int32x4_t) a, vdupq_n_s32((int) -c)));
++}
++
++// Shift packed 16-bit integers in a right by imm8 while shifting in sign
++// bits, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_srai_epi16
++FORCE_INLINE __m128i _mm_srai_epi16(__m128i a, int imm)
++{
++    const int count = (imm & ~15) ? 15 : imm;
++    return (__m128i) vshlq_s16((int16x8_t) a, vdupq_n_s16(-count));
++}
++
++// Shift packed 32-bit integers in a right by imm8 while shifting in sign bits,
++// and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_srai_epi32
++// FORCE_INLINE __m128i _mm_srai_epi32(__m128i a, __constrange(0,255) int imm)
++#define _mm_srai_epi32(a, imm)                                                \
++    _sse2neon_define0(                                                        \
++        __m128i, a, __m128i ret; if (_sse2neon_unlikely((imm) == 0)) {        \
++            ret = _a;                                                         \
++        } else if (_sse2neon_likely(0 < (imm) && (imm) < 32)) {               \
++            ret = vreinterpretq_m128i_s32(                                    \
++                vshlq_s32(vreinterpretq_s32_m128i(_a), vdupq_n_s32(-(imm)))); \
++        } else {                                                              \
++            ret = vreinterpretq_m128i_s32(                                    \
++                vshrq_n_s32(vreinterpretq_s32_m128i(_a), 31));                \
++        } _sse2neon_return(ret);)
++
++// Shift packed 16-bit integers in a right by count while shifting in zeros, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_srl_epi16
++FORCE_INLINE __m128i _mm_srl_epi16(__m128i a, __m128i count)
++{
++    uint64_t c = vreinterpretq_nth_u64_m128i(count, 0);
++    if (_sse2neon_unlikely(c & ~15))
++        return _mm_setzero_si128();
++
++    int16x8_t vc = vdupq_n_s16(-(int16_t) c);
++    return vreinterpretq_m128i_u16(vshlq_u16(vreinterpretq_u16_m128i(a), vc));
++}
++
++// Shift packed 32-bit integers in a right by count while shifting in zeros, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_srl_epi32
++FORCE_INLINE __m128i _mm_srl_epi32(__m128i a, __m128i count)
++{
++    uint64_t c = vreinterpretq_nth_u64_m128i(count, 0);
++    if (_sse2neon_unlikely(c & ~31))
++        return _mm_setzero_si128();
++
++    int32x4_t vc = vdupq_n_s32(-(int32_t) c);
++    return vreinterpretq_m128i_u32(vshlq_u32(vreinterpretq_u32_m128i(a), vc));
++}
++
++// Shift packed 64-bit integers in a right by count while shifting in zeros, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_srl_epi64
++FORCE_INLINE __m128i _mm_srl_epi64(__m128i a, __m128i count)
++{
++    uint64_t c = vreinterpretq_nth_u64_m128i(count, 0);
++    if (_sse2neon_unlikely(c & ~63))
++        return _mm_setzero_si128();
++
++    int64x2_t vc = vdupq_n_s64(-(int64_t) c);
++    return vreinterpretq_m128i_u64(vshlq_u64(vreinterpretq_u64_m128i(a), vc));
++}
++
++// Shift packed 16-bit integers in a right by imm8 while shifting in zeros, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_srli_epi16
++#define _mm_srli_epi16(a, imm)                                                \
++    _sse2neon_define0(                                                        \
++        __m128i, a, __m128i ret; if (_sse2neon_unlikely((imm) & ~15)) {       \
++            ret = _mm_setzero_si128();                                        \
++        } else {                                                              \
++            ret = vreinterpretq_m128i_u16(                                    \
++                vshlq_u16(vreinterpretq_u16_m128i(_a), vdupq_n_s16(-(imm)))); \
++        } _sse2neon_return(ret);)
++
++// Shift packed 32-bit integers in a right by imm8 while shifting in zeros, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_srli_epi32
++// FORCE_INLINE __m128i _mm_srli_epi32(__m128i a, __constrange(0,255) int imm)
++#define _mm_srli_epi32(a, imm)                                                \
++    _sse2neon_define0(                                                        \
++        __m128i, a, __m128i ret; if (_sse2neon_unlikely((imm) & ~31)) {       \
++            ret = _mm_setzero_si128();                                        \
++        } else {                                                              \
++            ret = vreinterpretq_m128i_u32(                                    \
++                vshlq_u32(vreinterpretq_u32_m128i(_a), vdupq_n_s32(-(imm)))); \
++        } _sse2neon_return(ret);)
++
++// Shift packed 64-bit integers in a right by imm8 while shifting in zeros, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_srli_epi64
++#define _mm_srli_epi64(a, imm)                                                \
++    _sse2neon_define0(                                                        \
++        __m128i, a, __m128i ret; if (_sse2neon_unlikely((imm) & ~63)) {       \
++            ret = _mm_setzero_si128();                                        \
++        } else {                                                              \
++            ret = vreinterpretq_m128i_u64(                                    \
++                vshlq_u64(vreinterpretq_u64_m128i(_a), vdupq_n_s64(-(imm)))); \
++        } _sse2neon_return(ret);)
++
++// Shift a right by imm8 bytes while shifting in zeros, and store the results in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_srli_si128
++#define _mm_srli_si128(a, imm)                                         \
++    _sse2neon_define1(                                                 \
++        __m128i, a, int8x16_t ret;                                     \
++        if (_sse2neon_unlikely((imm) & ~15)) ret = vdupq_n_s8(0);      \
++        else ret = vextq_s8(vreinterpretq_s8_m128i(_a), vdupq_n_s8(0), \
++                            (imm > 15 ? 0 : imm));                     \
++        _sse2neon_return(vreinterpretq_m128i_s8(ret));)
++
++// Store 128-bits (composed of 2 packed double-precision (64-bit) floating-point
++// elements) from a into memory. mem_addr must be aligned on a 16-byte boundary
++// or a general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_store_pd
++FORCE_INLINE void _mm_store_pd(double *mem_addr, __m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    vst1q_f64((float64_t *) mem_addr, vreinterpretq_f64_m128d(a));
++#else
++    vst1q_f32((float32_t *) mem_addr, vreinterpretq_f32_m128d(a));
++#endif
++}
++
++// Store the lower double-precision (64-bit) floating-point element from a into
++// 2 contiguous elements in memory. mem_addr must be aligned on a 16-byte
++// boundary or a general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_store_pd1
++FORCE_INLINE void _mm_store_pd1(double *mem_addr, __m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    float64x1_t a_low = vget_low_f64(vreinterpretq_f64_m128d(a));
++    vst1q_f64((float64_t *) mem_addr,
++              vreinterpretq_f64_m128d(vcombine_f64(a_low, a_low)));
++#else
++    float32x2_t a_low = vget_low_f32(vreinterpretq_f32_m128d(a));
++    vst1q_f32((float32_t *) mem_addr,
++              vreinterpretq_f32_m128d(vcombine_f32(a_low, a_low)));
++#endif
++}
++
++// Store the lower double-precision (64-bit) floating-point element from a into
++// memory. mem_addr does not need to be aligned on any particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=mm_store_sd
++FORCE_INLINE void _mm_store_sd(double *mem_addr, __m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    vst1_f64((float64_t *) mem_addr, vget_low_f64(vreinterpretq_f64_m128d(a)));
++#else
++    vst1_u64((uint64_t *) mem_addr, vget_low_u64(vreinterpretq_u64_m128d(a)));
++#endif
++}
++
++// Store 128-bits of integer data from a into memory. mem_addr must be aligned
++// on a 16-byte boundary or a general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_store_si128
++FORCE_INLINE void _mm_store_si128(__m128i *p, __m128i a)
++{
++    vst1q_s32((int32_t *) p, vreinterpretq_s32_m128i(a));
++}
++
++// Store the lower double-precision (64-bit) floating-point element from a into
++// 2 contiguous elements in memory. mem_addr must be aligned on a 16-byte
++// boundary or a general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#expand=9,526,5601&text=_mm_store1_pd
++#define _mm_store1_pd _mm_store_pd1
++
++// Store the upper double-precision (64-bit) floating-point element from a into
++// memory.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storeh_pd
++FORCE_INLINE void _mm_storeh_pd(double *mem_addr, __m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    vst1_f64((float64_t *) mem_addr, vget_high_f64(vreinterpretq_f64_m128d(a)));
++#else
++    vst1_f32((float32_t *) mem_addr, vget_high_f32(vreinterpretq_f32_m128d(a)));
++#endif
++}
++
++// Store 64-bit integer from the first element of a into memory.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storel_epi64
++FORCE_INLINE void _mm_storel_epi64(__m128i *a, __m128i b)
++{
++    vst1_u64((uint64_t *) a, vget_low_u64(vreinterpretq_u64_m128i(b)));
++}
++
++// Store the lower double-precision (64-bit) floating-point element from a into
++// memory.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storel_pd
++FORCE_INLINE void _mm_storel_pd(double *mem_addr, __m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    vst1_f64((float64_t *) mem_addr, vget_low_f64(vreinterpretq_f64_m128d(a)));
++#else
++    vst1_f32((float32_t *) mem_addr, vget_low_f32(vreinterpretq_f32_m128d(a)));
++#endif
++}
++
++// Store 2 double-precision (64-bit) floating-point elements from a into memory
++// in reverse order. mem_addr must be aligned on a 16-byte boundary or a
++// general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storer_pd
++FORCE_INLINE void _mm_storer_pd(double *mem_addr, __m128d a)
++{
++    float32x4_t f = vreinterpretq_f32_m128d(a);
++    _mm_store_pd(mem_addr, vreinterpretq_m128d_f32(vextq_f32(f, f, 2)));
++}
++
++// Store 128-bits (composed of 2 packed double-precision (64-bit) floating-point
++// elements) from a into memory. mem_addr does not need to be aligned on any
++// particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storeu_pd
++FORCE_INLINE void _mm_storeu_pd(double *mem_addr, __m128d a)
++{
++    _mm_store_pd(mem_addr, a);
++}
++
++// Store 128-bits of integer data from a into memory. mem_addr does not need to
++// be aligned on any particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storeu_si128
++FORCE_INLINE void _mm_storeu_si128(__m128i *p, __m128i a)
++{
++    vst1q_s32((int32_t *) p, vreinterpretq_s32_m128i(a));
++}
++
++// Store 32-bit integer from the first element of a into memory. mem_addr does
++// not need to be aligned on any particular boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_storeu_si32
++FORCE_INLINE void _mm_storeu_si32(void *p, __m128i a)
++{
++    vst1q_lane_s32((int32_t *) p, vreinterpretq_s32_m128i(a), 0);
++}
++
++// Store 128-bits (composed of 2 packed double-precision (64-bit) floating-point
++// elements) from a into memory using a non-temporal memory hint. mem_addr must
++// be aligned on a 16-byte boundary or a general-protection exception may be
++// generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_stream_pd
++FORCE_INLINE void _mm_stream_pd(double *p, __m128d a)
++{
++#if __has_builtin(__builtin_nontemporal_store)
++    __builtin_nontemporal_store(a, (__m128d *) p);
++#elif defined(__aarch64__) || defined(_M_ARM64)
++    vst1q_f64(p, vreinterpretq_f64_m128d(a));
++#else
++    vst1q_s64((int64_t *) p, vreinterpretq_s64_m128d(a));
++#endif
++}
++
++// Store 128-bits of integer data from a into memory using a non-temporal memory
++// hint. mem_addr must be aligned on a 16-byte boundary or a general-protection
++// exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_stream_si128
++FORCE_INLINE void _mm_stream_si128(__m128i *p, __m128i a)
++{
++#if __has_builtin(__builtin_nontemporal_store)
++    __builtin_nontemporal_store(a, p);
++#else
++    vst1q_s64((int64_t *) p, vreinterpretq_s64_m128i(a));
++#endif
++}
++
++// Store 32-bit integer a into memory using a non-temporal hint to minimize
++// cache pollution. If the cache line containing address mem_addr is already in
++// the cache, the cache will be updated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_stream_si32
++FORCE_INLINE void _mm_stream_si32(int *p, int a)
++{
++    vst1q_lane_s32((int32_t *) p, vdupq_n_s32(a), 0);
++}
++
++// Store 64-bit integer a into memory using a non-temporal hint to minimize
++// cache pollution. If the cache line containing address mem_addr is already in
++// the cache, the cache will be updated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_stream_si64
++FORCE_INLINE void _mm_stream_si64(__int64 *p, __int64 a)
++{
++    vst1_s64((int64_t *) p, vdup_n_s64((int64_t) a));
++}
++
++// Subtract packed 16-bit integers in b from packed 16-bit integers in a, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sub_epi16
++FORCE_INLINE __m128i _mm_sub_epi16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s16(
++        vsubq_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b)));
++}
++
++// Subtract packed 32-bit integers in b from packed 32-bit integers in a, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sub_epi32
++FORCE_INLINE __m128i _mm_sub_epi32(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s32(
++        vsubq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++}
++
++// Subtract packed 64-bit integers in b from packed 64-bit integers in a, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sub_epi64
++FORCE_INLINE __m128i _mm_sub_epi64(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s64(
++        vsubq_s64(vreinterpretq_s64_m128i(a), vreinterpretq_s64_m128i(b)));
++}
++
++// Subtract packed 8-bit integers in b from packed 8-bit integers in a, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sub_epi8
++FORCE_INLINE __m128i _mm_sub_epi8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s8(
++        vsubq_s8(vreinterpretq_s8_m128i(a), vreinterpretq_s8_m128i(b)));
++}
++
++// Subtract packed double-precision (64-bit) floating-point elements in b from
++// packed double-precision (64-bit) floating-point elements in a, and store the
++// results in dst.
++//  https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=mm_sub_pd
++FORCE_INLINE __m128d _mm_sub_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vsubq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#else
++    double *da = (double *) &a;
++    double *db = (double *) &b;
++    double c[2];
++    c[0] = da[0] - db[0];
++    c[1] = da[1] - db[1];
++    return vld1q_f32((float32_t *) c);
++#endif
++}
++
++// Subtract the lower double-precision (64-bit) floating-point element in b from
++// the lower double-precision (64-bit) floating-point element in a, store the
++// result in the lower element of dst, and copy the upper element from a to the
++// upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sub_sd
++FORCE_INLINE __m128d _mm_sub_sd(__m128d a, __m128d b)
++{
++    return _mm_move_sd(a, _mm_sub_pd(a, b));
++}
++
++// Subtract 64-bit integer b from 64-bit integer a, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sub_si64
++FORCE_INLINE __m64 _mm_sub_si64(__m64 a, __m64 b)
++{
++    return vreinterpret_m64_s64(
++        vsub_s64(vreinterpret_s64_m64(a), vreinterpret_s64_m64(b)));
++}
++
++// Subtract packed signed 16-bit integers in b from packed 16-bit integers in a
++// using saturation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_subs_epi16
++FORCE_INLINE __m128i _mm_subs_epi16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s16(
++        vqsubq_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b)));
++}
++
++// Subtract packed signed 8-bit integers in b from packed 8-bit integers in a
++// using saturation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_subs_epi8
++FORCE_INLINE __m128i _mm_subs_epi8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s8(
++        vqsubq_s8(vreinterpretq_s8_m128i(a), vreinterpretq_s8_m128i(b)));
++}
++
++// Subtract packed unsigned 16-bit integers in b from packed unsigned 16-bit
++// integers in a using saturation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_subs_epu16
++FORCE_INLINE __m128i _mm_subs_epu16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u16(
++        vqsubq_u16(vreinterpretq_u16_m128i(a), vreinterpretq_u16_m128i(b)));
++}
++
++// Subtract packed unsigned 8-bit integers in b from packed unsigned 8-bit
++// integers in a using saturation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_subs_epu8
++FORCE_INLINE __m128i _mm_subs_epu8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u8(
++        vqsubq_u8(vreinterpretq_u8_m128i(a), vreinterpretq_u8_m128i(b)));
++}
++
++#define _mm_ucomieq_sd _mm_comieq_sd
++#define _mm_ucomige_sd _mm_comige_sd
++#define _mm_ucomigt_sd _mm_comigt_sd
++#define _mm_ucomile_sd _mm_comile_sd
++#define _mm_ucomilt_sd _mm_comilt_sd
++#define _mm_ucomineq_sd _mm_comineq_sd
++
++// Return vector of type __m128d with undefined elements.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_undefined_pd
++FORCE_INLINE __m128d _mm_undefined_pd(void)
++{
++#if defined(__GNUC__) || defined(__clang__)
++#pragma GCC diagnostic push
++#pragma GCC diagnostic ignored "-Wuninitialized"
++#endif
++    __m128d a;
++#if defined(_MSC_VER)
++    a = _mm_setzero_pd();
++#endif
++    return a;
++#if defined(__GNUC__) || defined(__clang__)
++#pragma GCC diagnostic pop
++#endif
++}
++
++// Unpack and interleave 16-bit integers from the high half of a and b, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_unpackhi_epi16
++FORCE_INLINE __m128i _mm_unpackhi_epi16(__m128i a, __m128i b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s16(
++        vzip2q_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b)));
++#else
++    int16x4_t a1 = vget_high_s16(vreinterpretq_s16_m128i(a));
++    int16x4_t b1 = vget_high_s16(vreinterpretq_s16_m128i(b));
++    int16x4x2_t result = vzip_s16(a1, b1);
++    return vreinterpretq_m128i_s16(vcombine_s16(result.val[0], result.val[1]));
++#endif
++}
++
++// Unpack and interleave 32-bit integers from the high half of a and b, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_unpackhi_epi32
++FORCE_INLINE __m128i _mm_unpackhi_epi32(__m128i a, __m128i b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s32(
++        vzip2q_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++#else
++    int32x2_t a1 = vget_high_s32(vreinterpretq_s32_m128i(a));
++    int32x2_t b1 = vget_high_s32(vreinterpretq_s32_m128i(b));
++    int32x2x2_t result = vzip_s32(a1, b1);
++    return vreinterpretq_m128i_s32(vcombine_s32(result.val[0], result.val[1]));
++#endif
++}
++
++// Unpack and interleave 64-bit integers from the high half of a and b, and
++// store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_unpackhi_epi64
++FORCE_INLINE __m128i _mm_unpackhi_epi64(__m128i a, __m128i b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s64(
++        vzip2q_s64(vreinterpretq_s64_m128i(a), vreinterpretq_s64_m128i(b)));
++#else
++    int64x1_t a_h = vget_high_s64(vreinterpretq_s64_m128i(a));
++    int64x1_t b_h = vget_high_s64(vreinterpretq_s64_m128i(b));
++    return vreinterpretq_m128i_s64(vcombine_s64(a_h, b_h));
++#endif
++}
++
++// Unpack and interleave 8-bit integers from the high half of a and b, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_unpackhi_epi8
++FORCE_INLINE __m128i _mm_unpackhi_epi8(__m128i a, __m128i b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s8(
++        vzip2q_s8(vreinterpretq_s8_m128i(a), vreinterpretq_s8_m128i(b)));
++#else
++    int8x8_t a1 =
++        vreinterpret_s8_s16(vget_high_s16(vreinterpretq_s16_m128i(a)));
++    int8x8_t b1 =
++        vreinterpret_s8_s16(vget_high_s16(vreinterpretq_s16_m128i(b)));
++    int8x8x2_t result = vzip_s8(a1, b1);
++    return vreinterpretq_m128i_s8(vcombine_s8(result.val[0], result.val[1]));
++#endif
++}
++
++// Unpack and interleave double-precision (64-bit) floating-point elements from
++// the high half of a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_unpackhi_pd
++FORCE_INLINE __m128d _mm_unpackhi_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vzip2q_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#else
++    return vreinterpretq_m128d_s64(
++        vcombine_s64(vget_high_s64(vreinterpretq_s64_m128d(a)),
++                     vget_high_s64(vreinterpretq_s64_m128d(b))));
++#endif
++}
++
++// Unpack and interleave 16-bit integers from the low half of a and b, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_unpacklo_epi16
++FORCE_INLINE __m128i _mm_unpacklo_epi16(__m128i a, __m128i b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s16(
++        vzip1q_s16(vreinterpretq_s16_m128i(a), vreinterpretq_s16_m128i(b)));
++#else
++    int16x4_t a1 = vget_low_s16(vreinterpretq_s16_m128i(a));
++    int16x4_t b1 = vget_low_s16(vreinterpretq_s16_m128i(b));
++    int16x4x2_t result = vzip_s16(a1, b1);
++    return vreinterpretq_m128i_s16(vcombine_s16(result.val[0], result.val[1]));
++#endif
++}
++
++// Unpack and interleave 32-bit integers from the low half of a and b, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_unpacklo_epi32
++FORCE_INLINE __m128i _mm_unpacklo_epi32(__m128i a, __m128i b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s32(
++        vzip1q_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++#else
++    int32x2_t a1 = vget_low_s32(vreinterpretq_s32_m128i(a));
++    int32x2_t b1 = vget_low_s32(vreinterpretq_s32_m128i(b));
++    int32x2x2_t result = vzip_s32(a1, b1);
++    return vreinterpretq_m128i_s32(vcombine_s32(result.val[0], result.val[1]));
++#endif
++}
++
++// Unpack and interleave 64-bit integers from the low half of a and b, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_unpacklo_epi64
++FORCE_INLINE __m128i _mm_unpacklo_epi64(__m128i a, __m128i b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s64(
++        vzip1q_s64(vreinterpretq_s64_m128i(a), vreinterpretq_s64_m128i(b)));
++#else
++    int64x1_t a_l = vget_low_s64(vreinterpretq_s64_m128i(a));
++    int64x1_t b_l = vget_low_s64(vreinterpretq_s64_m128i(b));
++    return vreinterpretq_m128i_s64(vcombine_s64(a_l, b_l));
++#endif
++}
++
++// Unpack and interleave 8-bit integers from the low half of a and b, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_unpacklo_epi8
++FORCE_INLINE __m128i _mm_unpacklo_epi8(__m128i a, __m128i b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s8(
++        vzip1q_s8(vreinterpretq_s8_m128i(a), vreinterpretq_s8_m128i(b)));
++#else
++    int8x8_t a1 = vreinterpret_s8_s16(vget_low_s16(vreinterpretq_s16_m128i(a)));
++    int8x8_t b1 = vreinterpret_s8_s16(vget_low_s16(vreinterpretq_s16_m128i(b)));
++    int8x8x2_t result = vzip_s8(a1, b1);
++    return vreinterpretq_m128i_s8(vcombine_s8(result.val[0], result.val[1]));
++#endif
++}
++
++// Unpack and interleave double-precision (64-bit) floating-point elements from
++// the low half of a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_unpacklo_pd
++FORCE_INLINE __m128d _mm_unpacklo_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vzip1q_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#else
++    return vreinterpretq_m128d_s64(
++        vcombine_s64(vget_low_s64(vreinterpretq_s64_m128d(a)),
++                     vget_low_s64(vreinterpretq_s64_m128d(b))));
++#endif
++}
++
++// Compute the bitwise XOR of packed double-precision (64-bit) floating-point
++// elements in a and b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_xor_pd
++FORCE_INLINE __m128d _mm_xor_pd(__m128d a, __m128d b)
++{
++    return vreinterpretq_m128d_s64(
++        veorq_s64(vreinterpretq_s64_m128d(a), vreinterpretq_s64_m128d(b)));
++}
++
++// Compute the bitwise XOR of 128 bits (representing integer data) in a and b,
++// and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_xor_si128
++FORCE_INLINE __m128i _mm_xor_si128(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s32(
++        veorq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++}
++
++/* SSE3 */
++
++// Alternatively add and subtract packed double-precision (64-bit)
++// floating-point elements in a to/from packed elements in b, and store the
++// results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_addsub_pd
++FORCE_INLINE __m128d _mm_addsub_pd(__m128d a, __m128d b)
++{
++    _sse2neon_const __m128d mask = _mm_set_pd(1.0f, -1.0f);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(vfmaq_f64(vreinterpretq_f64_m128d(a),
++                                             vreinterpretq_f64_m128d(b),
++                                             vreinterpretq_f64_m128d(mask)));
++#else
++    return _mm_add_pd(_mm_mul_pd(b, mask), a);
++#endif
++}
++
++// Alternatively add and subtract packed single-precision (32-bit)
++// floating-point elements in a to/from packed elements in b, and store the
++// results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=addsub_ps
++FORCE_INLINE __m128 _mm_addsub_ps(__m128 a, __m128 b)
++{
++    _sse2neon_const __m128 mask = _mm_setr_ps(-1.0f, 1.0f, -1.0f, 1.0f);
++#if (defined(__aarch64__) || defined(_M_ARM64)) || \
++    defined(__ARM_FEATURE_FMA) /* VFPv4+ */
++    return vreinterpretq_m128_f32(vfmaq_f32(vreinterpretq_f32_m128(a),
++                                            vreinterpretq_f32_m128(mask),
++                                            vreinterpretq_f32_m128(b)));
++#else
++    return _mm_add_ps(_mm_mul_ps(b, mask), a);
++#endif
++}
++
++// Horizontally add adjacent pairs of double-precision (64-bit) floating-point
++// elements in a and b, and pack the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hadd_pd
++FORCE_INLINE __m128d _mm_hadd_pd(__m128d a, __m128d b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vpaddq_f64(vreinterpretq_f64_m128d(a), vreinterpretq_f64_m128d(b)));
++#else
++    double *da = (double *) &a;
++    double *db = (double *) &b;
++    double c[] = {da[0] + da[1], db[0] + db[1]};
++    return vreinterpretq_m128d_u64(vld1q_u64((uint64_t *) c));
++#endif
++}
++
++// Horizontally add adjacent pairs of single-precision (32-bit) floating-point
++// elements in a and b, and pack the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hadd_ps
++FORCE_INLINE __m128 _mm_hadd_ps(__m128 a, __m128 b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128_f32(
++        vpaddq_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(b)));
++#else
++    float32x2_t a10 = vget_low_f32(vreinterpretq_f32_m128(a));
++    float32x2_t a32 = vget_high_f32(vreinterpretq_f32_m128(a));
++    float32x2_t b10 = vget_low_f32(vreinterpretq_f32_m128(b));
++    float32x2_t b32 = vget_high_f32(vreinterpretq_f32_m128(b));
++    return vreinterpretq_m128_f32(
++        vcombine_f32(vpadd_f32(a10, a32), vpadd_f32(b10, b32)));
++#endif
++}
++
++// Horizontally subtract adjacent pairs of double-precision (64-bit)
++// floating-point elements in a and b, and pack the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hsub_pd
++FORCE_INLINE __m128d _mm_hsub_pd(__m128d _a, __m128d _b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    float64x2_t a = vreinterpretq_f64_m128d(_a);
++    float64x2_t b = vreinterpretq_f64_m128d(_b);
++    return vreinterpretq_m128d_f64(
++        vsubq_f64(vuzp1q_f64(a, b), vuzp2q_f64(a, b)));
++#else
++    double *da = (double *) &_a;
++    double *db = (double *) &_b;
++    double c[] = {da[0] - da[1], db[0] - db[1]};
++    return vreinterpretq_m128d_u64(vld1q_u64((uint64_t *) c));
++#endif
++}
++
++// Horizontally subtract adjacent pairs of single-precision (32-bit)
++// floating-point elements in a and b, and pack the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hsub_ps
++FORCE_INLINE __m128 _mm_hsub_ps(__m128 _a, __m128 _b)
++{
++    float32x4_t a = vreinterpretq_f32_m128(_a);
++    float32x4_t b = vreinterpretq_f32_m128(_b);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128_f32(
++        vsubq_f32(vuzp1q_f32(a, b), vuzp2q_f32(a, b)));
++#else
++    float32x4x2_t c = vuzpq_f32(a, b);
++    return vreinterpretq_m128_f32(vsubq_f32(c.val[0], c.val[1]));
++#endif
++}
++
++// Load 128-bits of integer data from unaligned memory into dst. This intrinsic
++// may perform better than _mm_loadu_si128 when the data crosses a cache line
++// boundary.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_lddqu_si128
++#define _mm_lddqu_si128 _mm_loadu_si128
++
++// Load a double-precision (64-bit) floating-point element from memory into both
++// elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_loaddup_pd
++#define _mm_loaddup_pd _mm_load1_pd
++
++// Duplicate the low double-precision (64-bit) floating-point element from a,
++// and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_movedup_pd
++FORCE_INLINE __m128d _mm_movedup_pd(__m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(
++        vdupq_laneq_f64(vreinterpretq_f64_m128d(a), 0));
++#else
++    return vreinterpretq_m128d_u64(
++        vdupq_n_u64(vgetq_lane_u64(vreinterpretq_u64_m128d(a), 0)));
++#endif
++}
++
++// Duplicate odd-indexed single-precision (32-bit) floating-point elements
++// from a, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_movehdup_ps
++FORCE_INLINE __m128 _mm_movehdup_ps(__m128 a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128_f32(
++        vtrn2q_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(a)));
++#elif defined(_sse2neon_shuffle)
++    return vreinterpretq_m128_f32(vshuffleq_s32(
++        vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(a), 1, 1, 3, 3));
++#else
++    float32_t a1 = vgetq_lane_f32(vreinterpretq_f32_m128(a), 1);
++    float32_t a3 = vgetq_lane_f32(vreinterpretq_f32_m128(a), 3);
++    float ALIGN_STRUCT(16) data[4] = {a1, a1, a3, a3};
++    return vreinterpretq_m128_f32(vld1q_f32(data));
++#endif
++}
++
++// Duplicate even-indexed single-precision (32-bit) floating-point elements
++// from a, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_moveldup_ps
++FORCE_INLINE __m128 _mm_moveldup_ps(__m128 a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128_f32(
++        vtrn1q_f32(vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(a)));
++#elif defined(_sse2neon_shuffle)
++    return vreinterpretq_m128_f32(vshuffleq_s32(
++        vreinterpretq_f32_m128(a), vreinterpretq_f32_m128(a), 0, 0, 2, 2));
++#else
++    float32_t a0 = vgetq_lane_f32(vreinterpretq_f32_m128(a), 0);
++    float32_t a2 = vgetq_lane_f32(vreinterpretq_f32_m128(a), 2);
++    float ALIGN_STRUCT(16) data[4] = {a0, a0, a2, a2};
++    return vreinterpretq_m128_f32(vld1q_f32(data));
++#endif
++}
++
++/* SSSE3 */
++
++// Compute the absolute value of packed signed 16-bit integers in a, and store
++// the unsigned results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_abs_epi16
++FORCE_INLINE __m128i _mm_abs_epi16(__m128i a)
++{
++    return vreinterpretq_m128i_s16(vabsq_s16(vreinterpretq_s16_m128i(a)));
++}
++
++// Compute the absolute value of packed signed 32-bit integers in a, and store
++// the unsigned results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_abs_epi32
++FORCE_INLINE __m128i _mm_abs_epi32(__m128i a)
++{
++    return vreinterpretq_m128i_s32(vabsq_s32(vreinterpretq_s32_m128i(a)));
++}
++
++// Compute the absolute value of packed signed 8-bit integers in a, and store
++// the unsigned results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_abs_epi8
++FORCE_INLINE __m128i _mm_abs_epi8(__m128i a)
++{
++    return vreinterpretq_m128i_s8(vabsq_s8(vreinterpretq_s8_m128i(a)));
++}
++
++// Compute the absolute value of packed signed 16-bit integers in a, and store
++// the unsigned results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_abs_pi16
++FORCE_INLINE __m64 _mm_abs_pi16(__m64 a)
++{
++    return vreinterpret_m64_s16(vabs_s16(vreinterpret_s16_m64(a)));
++}
++
++// Compute the absolute value of packed signed 32-bit integers in a, and store
++// the unsigned results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_abs_pi32
++FORCE_INLINE __m64 _mm_abs_pi32(__m64 a)
++{
++    return vreinterpret_m64_s32(vabs_s32(vreinterpret_s32_m64(a)));
++}
++
++// Compute the absolute value of packed signed 8-bit integers in a, and store
++// the unsigned results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_abs_pi8
++FORCE_INLINE __m64 _mm_abs_pi8(__m64 a)
++{
++    return vreinterpret_m64_s8(vabs_s8(vreinterpret_s8_m64(a)));
++}
++
++// Concatenate 16-byte blocks in a and b into a 32-byte temporary result, shift
++// the result right by imm8 bytes, and store the low 16 bytes in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_alignr_epi8
++#if defined(__GNUC__) && !defined(__clang__)
++#define _mm_alignr_epi8(a, b, imm)                                            \
++    __extension__({                                                           \
++        uint8x16_t _a = vreinterpretq_u8_m128i(a);                            \
++        uint8x16_t _b = vreinterpretq_u8_m128i(b);                            \
++        __m128i ret;                                                          \
++        if (_sse2neon_unlikely((imm) & ~31))                                  \
++            ret = vreinterpretq_m128i_u8(vdupq_n_u8(0));                      \
++        else if (imm >= 16)                                                   \
++            ret = _mm_srli_si128(a, imm >= 16 ? imm - 16 : 0);                \
++        else                                                                  \
++            ret =                                                             \
++                vreinterpretq_m128i_u8(vextq_u8(_b, _a, imm < 16 ? imm : 0)); \
++        ret;                                                                  \
++    })
++
++#else
++#define _mm_alignr_epi8(a, b, imm)                                          \
++    _sse2neon_define2(                                                      \
++        __m128i, a, b, uint8x16_t __a = vreinterpretq_u8_m128i(_a);         \
++        uint8x16_t __b = vreinterpretq_u8_m128i(_b); __m128i ret;           \
++        if (_sse2neon_unlikely((imm) & ~31)) ret =                          \
++            vreinterpretq_m128i_u8(vdupq_n_u8(0));                          \
++        else if (imm >= 16) ret =                                           \
++            _mm_srli_si128(_a, imm >= 16 ? imm - 16 : 0);                   \
++        else ret =                                                          \
++            vreinterpretq_m128i_u8(vextq_u8(__b, __a, imm < 16 ? imm : 0)); \
++        _sse2neon_return(ret);)
++
++#endif
++
++// Concatenate 8-byte blocks in a and b into a 16-byte temporary result, shift
++// the result right by imm8 bytes, and store the low 8 bytes in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_alignr_pi8
++#define _mm_alignr_pi8(a, b, imm)                                           \
++    _sse2neon_define2(                                                      \
++        __m64, a, b, __m64 ret; if (_sse2neon_unlikely((imm) >= 16)) {      \
++            ret = vreinterpret_m64_s8(vdup_n_s8(0));                        \
++        } else {                                                            \
++            uint8x8_t tmp_low;                                              \
++            uint8x8_t tmp_high;                                             \
++            if ((imm) >= 8) {                                               \
++                const int idx = (imm) -8;                                   \
++                tmp_low = vreinterpret_u8_m64(_a);                          \
++                tmp_high = vdup_n_u8(0);                                    \
++                ret = vreinterpret_m64_u8(vext_u8(tmp_low, tmp_high, idx)); \
++            } else {                                                        \
++                const int idx = (imm);                                      \
++                tmp_low = vreinterpret_u8_m64(_b);                          \
++                tmp_high = vreinterpret_u8_m64(_a);                         \
++                ret = vreinterpret_m64_u8(vext_u8(tmp_low, tmp_high, idx)); \
++            }                                                               \
++        } _sse2neon_return(ret);)
++
++// Horizontally add adjacent pairs of 16-bit integers in a and b, and pack the
++// signed 16-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hadd_epi16
++FORCE_INLINE __m128i _mm_hadd_epi16(__m128i _a, __m128i _b)
++{
++    int16x8_t a = vreinterpretq_s16_m128i(_a);
++    int16x8_t b = vreinterpretq_s16_m128i(_b);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s16(vpaddq_s16(a, b));
++#else
++    return vreinterpretq_m128i_s16(
++        vcombine_s16(vpadd_s16(vget_low_s16(a), vget_high_s16(a)),
++                     vpadd_s16(vget_low_s16(b), vget_high_s16(b))));
++#endif
++}
++
++// Horizontally add adjacent pairs of 32-bit integers in a and b, and pack the
++// signed 32-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hadd_epi32
++FORCE_INLINE __m128i _mm_hadd_epi32(__m128i _a, __m128i _b)
++{
++    int32x4_t a = vreinterpretq_s32_m128i(_a);
++    int32x4_t b = vreinterpretq_s32_m128i(_b);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s32(vpaddq_s32(a, b));
++#else
++    return vreinterpretq_m128i_s32(
++        vcombine_s32(vpadd_s32(vget_low_s32(a), vget_high_s32(a)),
++                     vpadd_s32(vget_low_s32(b), vget_high_s32(b))));
++#endif
++}
++
++// Horizontally add adjacent pairs of 16-bit integers in a and b, and pack the
++// signed 16-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hadd_pi16
++FORCE_INLINE __m64 _mm_hadd_pi16(__m64 a, __m64 b)
++{
++    return vreinterpret_m64_s16(
++        vpadd_s16(vreinterpret_s16_m64(a), vreinterpret_s16_m64(b)));
++}
++
++// Horizontally add adjacent pairs of 32-bit integers in a and b, and pack the
++// signed 32-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hadd_pi32
++FORCE_INLINE __m64 _mm_hadd_pi32(__m64 a, __m64 b)
++{
++    return vreinterpret_m64_s32(
++        vpadd_s32(vreinterpret_s32_m64(a), vreinterpret_s32_m64(b)));
++}
++
++// Horizontally add adjacent pairs of signed 16-bit integers in a and b using
++// saturation, and pack the signed 16-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hadds_epi16
++FORCE_INLINE __m128i _mm_hadds_epi16(__m128i _a, __m128i _b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    int16x8_t a = vreinterpretq_s16_m128i(_a);
++    int16x8_t b = vreinterpretq_s16_m128i(_b);
++    return vreinterpretq_s64_s16(
++        vqaddq_s16(vuzp1q_s16(a, b), vuzp2q_s16(a, b)));
++#else
++    int32x4_t a = vreinterpretq_s32_m128i(_a);
++    int32x4_t b = vreinterpretq_s32_m128i(_b);
++    // Interleave using vshrn/vmovn
++    // [a0|a2|a4|a6|b0|b2|b4|b6]
++    // [a1|a3|a5|a7|b1|b3|b5|b7]
++    int16x8_t ab0246 = vcombine_s16(vmovn_s32(a), vmovn_s32(b));
++    int16x8_t ab1357 = vcombine_s16(vshrn_n_s32(a, 16), vshrn_n_s32(b, 16));
++    // Saturated add
++    return vreinterpretq_m128i_s16(vqaddq_s16(ab0246, ab1357));
++#endif
++}
++
++// Horizontally add adjacent pairs of signed 16-bit integers in a and b using
++// saturation, and pack the signed 16-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hadds_pi16
++FORCE_INLINE __m64 _mm_hadds_pi16(__m64 _a, __m64 _b)
++{
++    int16x4_t a = vreinterpret_s16_m64(_a);
++    int16x4_t b = vreinterpret_s16_m64(_b);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpret_s64_s16(vqadd_s16(vuzp1_s16(a, b), vuzp2_s16(a, b)));
++#else
++    int16x4x2_t res = vuzp_s16(a, b);
++    return vreinterpret_s64_s16(vqadd_s16(res.val[0], res.val[1]));
++#endif
++}
++
++// Horizontally subtract adjacent pairs of 16-bit integers in a and b, and pack
++// the signed 16-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hsub_epi16
++FORCE_INLINE __m128i _mm_hsub_epi16(__m128i _a, __m128i _b)
++{
++    int16x8_t a = vreinterpretq_s16_m128i(_a);
++    int16x8_t b = vreinterpretq_s16_m128i(_b);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s16(
++        vsubq_s16(vuzp1q_s16(a, b), vuzp2q_s16(a, b)));
++#else
++    int16x8x2_t c = vuzpq_s16(a, b);
++    return vreinterpretq_m128i_s16(vsubq_s16(c.val[0], c.val[1]));
++#endif
++}
++
++// Horizontally subtract adjacent pairs of 32-bit integers in a and b, and pack
++// the signed 32-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hsub_epi32
++FORCE_INLINE __m128i _mm_hsub_epi32(__m128i _a, __m128i _b)
++{
++    int32x4_t a = vreinterpretq_s32_m128i(_a);
++    int32x4_t b = vreinterpretq_s32_m128i(_b);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s32(
++        vsubq_s32(vuzp1q_s32(a, b), vuzp2q_s32(a, b)));
++#else
++    int32x4x2_t c = vuzpq_s32(a, b);
++    return vreinterpretq_m128i_s32(vsubq_s32(c.val[0], c.val[1]));
++#endif
++}
++
++// Horizontally subtract adjacent pairs of 16-bit integers in a and b, and pack
++// the signed 16-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hsub_pi16
++FORCE_INLINE __m64 _mm_hsub_pi16(__m64 _a, __m64 _b)
++{
++    int16x4_t a = vreinterpret_s16_m64(_a);
++    int16x4_t b = vreinterpret_s16_m64(_b);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpret_m64_s16(vsub_s16(vuzp1_s16(a, b), vuzp2_s16(a, b)));
++#else
++    int16x4x2_t c = vuzp_s16(a, b);
++    return vreinterpret_m64_s16(vsub_s16(c.val[0], c.val[1]));
++#endif
++}
++
++// Horizontally subtract adjacent pairs of 32-bit integers in a and b, and pack
++// the signed 32-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=mm_hsub_pi32
++FORCE_INLINE __m64 _mm_hsub_pi32(__m64 _a, __m64 _b)
++{
++    int32x2_t a = vreinterpret_s32_m64(_a);
++    int32x2_t b = vreinterpret_s32_m64(_b);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpret_m64_s32(vsub_s32(vuzp1_s32(a, b), vuzp2_s32(a, b)));
++#else
++    int32x2x2_t c = vuzp_s32(a, b);
++    return vreinterpret_m64_s32(vsub_s32(c.val[0], c.val[1]));
++#endif
++}
++
++// Horizontally subtract adjacent pairs of signed 16-bit integers in a and b
++// using saturation, and pack the signed 16-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hsubs_epi16
++FORCE_INLINE __m128i _mm_hsubs_epi16(__m128i _a, __m128i _b)
++{
++    int16x8_t a = vreinterpretq_s16_m128i(_a);
++    int16x8_t b = vreinterpretq_s16_m128i(_b);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s16(
++        vqsubq_s16(vuzp1q_s16(a, b), vuzp2q_s16(a, b)));
++#else
++    int16x8x2_t c = vuzpq_s16(a, b);
++    return vreinterpretq_m128i_s16(vqsubq_s16(c.val[0], c.val[1]));
++#endif
++}
++
++// Horizontally subtract adjacent pairs of signed 16-bit integers in a and b
++// using saturation, and pack the signed 16-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_hsubs_pi16
++FORCE_INLINE __m64 _mm_hsubs_pi16(__m64 _a, __m64 _b)
++{
++    int16x4_t a = vreinterpret_s16_m64(_a);
++    int16x4_t b = vreinterpret_s16_m64(_b);
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpret_m64_s16(vqsub_s16(vuzp1_s16(a, b), vuzp2_s16(a, b)));
++#else
++    int16x4x2_t c = vuzp_s16(a, b);
++    return vreinterpret_m64_s16(vqsub_s16(c.val[0], c.val[1]));
++#endif
++}
++
++// Vertically multiply each unsigned 8-bit integer from a with the corresponding
++// signed 8-bit integer from b, producing intermediate signed 16-bit integers.
++// Horizontally add adjacent pairs of intermediate signed 16-bit integers,
++// and pack the saturated results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_maddubs_epi16
++FORCE_INLINE __m128i _mm_maddubs_epi16(__m128i _a, __m128i _b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    uint8x16_t a = vreinterpretq_u8_m128i(_a);
++    int8x16_t b = vreinterpretq_s8_m128i(_b);
++    int16x8_t tl = vmulq_s16(vreinterpretq_s16_u16(vmovl_u8(vget_low_u8(a))),
++                             vmovl_s8(vget_low_s8(b)));
++    int16x8_t th = vmulq_s16(vreinterpretq_s16_u16(vmovl_u8(vget_high_u8(a))),
++                             vmovl_s8(vget_high_s8(b)));
++    return vreinterpretq_m128i_s16(
++        vqaddq_s16(vuzp1q_s16(tl, th), vuzp2q_s16(tl, th)));
++#else
++    // This would be much simpler if x86 would choose to zero extend OR sign
++    // extend, not both. This could probably be optimized better.
++    uint16x8_t a = vreinterpretq_u16_m128i(_a);
++    int16x8_t b = vreinterpretq_s16_m128i(_b);
++
++    // Zero extend a
++    int16x8_t a_odd = vreinterpretq_s16_u16(vshrq_n_u16(a, 8));
++    int16x8_t a_even = vreinterpretq_s16_u16(vbicq_u16(a, vdupq_n_u16(0xff00)));
++
++    // Sign extend by shifting left then shifting right.
++    int16x8_t b_even = vshrq_n_s16(vshlq_n_s16(b, 8), 8);
++    int16x8_t b_odd = vshrq_n_s16(b, 8);
++
++    // multiply
++    int16x8_t prod1 = vmulq_s16(a_even, b_even);
++    int16x8_t prod2 = vmulq_s16(a_odd, b_odd);
++
++    // saturated add
++    return vreinterpretq_m128i_s16(vqaddq_s16(prod1, prod2));
++#endif
++}
++
++// Vertically multiply each unsigned 8-bit integer from a with the corresponding
++// signed 8-bit integer from b, producing intermediate signed 16-bit integers.
++// Horizontally add adjacent pairs of intermediate signed 16-bit integers, and
++// pack the saturated results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_maddubs_pi16
++FORCE_INLINE __m64 _mm_maddubs_pi16(__m64 _a, __m64 _b)
++{
++    uint16x4_t a = vreinterpret_u16_m64(_a);
++    int16x4_t b = vreinterpret_s16_m64(_b);
++
++    // Zero extend a
++    int16x4_t a_odd = vreinterpret_s16_u16(vshr_n_u16(a, 8));
++    int16x4_t a_even = vreinterpret_s16_u16(vand_u16(a, vdup_n_u16(0xff)));
++
++    // Sign extend by shifting left then shifting right.
++    int16x4_t b_even = vshr_n_s16(vshl_n_s16(b, 8), 8);
++    int16x4_t b_odd = vshr_n_s16(b, 8);
++
++    // multiply
++    int16x4_t prod1 = vmul_s16(a_even, b_even);
++    int16x4_t prod2 = vmul_s16(a_odd, b_odd);
++
++    // saturated add
++    return vreinterpret_m64_s16(vqadd_s16(prod1, prod2));
++}
++
++// Multiply packed signed 16-bit integers in a and b, producing intermediate
++// signed 32-bit integers. Shift right by 15 bits while rounding up, and store
++// the packed 16-bit integers in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mulhrs_epi16
++FORCE_INLINE __m128i _mm_mulhrs_epi16(__m128i a, __m128i b)
++{
++    // Has issues due to saturation
++    // return vreinterpretq_m128i_s16(vqrdmulhq_s16(a, b));
++
++    // Multiply
++    int32x4_t mul_lo = vmull_s16(vget_low_s16(vreinterpretq_s16_m128i(a)),
++                                 vget_low_s16(vreinterpretq_s16_m128i(b)));
++    int32x4_t mul_hi = vmull_s16(vget_high_s16(vreinterpretq_s16_m128i(a)),
++                                 vget_high_s16(vreinterpretq_s16_m128i(b)));
++
++    // Rounding narrowing shift right
++    // narrow = (int16_t)((mul + 16384) >> 15);
++    int16x4_t narrow_lo = vrshrn_n_s32(mul_lo, 15);
++    int16x4_t narrow_hi = vrshrn_n_s32(mul_hi, 15);
++
++    // Join together
++    return vreinterpretq_m128i_s16(vcombine_s16(narrow_lo, narrow_hi));
++}
++
++// Multiply packed signed 16-bit integers in a and b, producing intermediate
++// signed 32-bit integers. Truncate each intermediate integer to the 18 most
++// significant bits, round by adding 1, and store bits [16:1] to dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mulhrs_pi16
++FORCE_INLINE __m64 _mm_mulhrs_pi16(__m64 a, __m64 b)
++{
++    int32x4_t mul_extend =
++        vmull_s16((vreinterpret_s16_m64(a)), (vreinterpret_s16_m64(b)));
++
++    // Rounding narrowing shift right
++    return vreinterpret_m64_s16(vrshrn_n_s32(mul_extend, 15));
++}
++
++// Shuffle packed 8-bit integers in a according to shuffle control mask in the
++// corresponding 8-bit element of b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_shuffle_epi8
++FORCE_INLINE __m128i _mm_shuffle_epi8(__m128i a, __m128i b)
++{
++    int8x16_t tbl = vreinterpretq_s8_m128i(a);   // input a
++    uint8x16_t idx = vreinterpretq_u8_m128i(b);  // input b
++    uint8x16_t idx_masked =
++        vandq_u8(idx, vdupq_n_u8(0x8F));  // avoid using meaningless bits
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_s8(vqtbl1q_s8(tbl, idx_masked));
++#elif defined(__GNUC__)
++    int8x16_t ret;
++    // %e and %f represent the even and odd D registers
++    // respectively.
++    __asm__ __volatile__(
++        "vtbl.8  %e[ret], {%e[tbl], %f[tbl]}, %e[idx]\n"
++        "vtbl.8  %f[ret], {%e[tbl], %f[tbl]}, %f[idx]\n"
++        : [ret] "=&w"(ret)
++        : [tbl] "w"(tbl), [idx] "w"(idx_masked));
++    return vreinterpretq_m128i_s8(ret);
++#else
++    // use this line if testing on aarch64
++    int8x8x2_t a_split = {vget_low_s8(tbl), vget_high_s8(tbl)};
++    return vreinterpretq_m128i_s8(
++        vcombine_s8(vtbl2_s8(a_split, vget_low_u8(idx_masked)),
++                    vtbl2_s8(a_split, vget_high_u8(idx_masked))));
++#endif
++}
++
++// Shuffle packed 8-bit integers in a according to shuffle control mask in the
++// corresponding 8-bit element of b, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_shuffle_pi8
++FORCE_INLINE __m64 _mm_shuffle_pi8(__m64 a, __m64 b)
++{
++    const int8x8_t controlMask =
++        vand_s8(vreinterpret_s8_m64(b), vdup_n_s8((int8_t) (0x1 << 7 | 0x07)));
++    int8x8_t res = vtbl1_s8(vreinterpret_s8_m64(a), controlMask);
++    return vreinterpret_m64_s8(res);
++}
++
++// Negate packed 16-bit integers in a when the corresponding signed
++// 16-bit integer in b is negative, and store the results in dst.
++// Element in dst are zeroed out when the corresponding element
++// in b is zero.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sign_epi16
++FORCE_INLINE __m128i _mm_sign_epi16(__m128i _a, __m128i _b)
++{
++    int16x8_t a = vreinterpretq_s16_m128i(_a);
++    int16x8_t b = vreinterpretq_s16_m128i(_b);
++
++    // signed shift right: faster than vclt
++    // (b < 0) ? 0xFFFF : 0
++    uint16x8_t ltMask = vreinterpretq_u16_s16(vshrq_n_s16(b, 15));
++    // (b == 0) ? 0xFFFF : 0
++#if defined(__aarch64__) || defined(_M_ARM64)
++    int16x8_t zeroMask = vreinterpretq_s16_u16(vceqzq_s16(b));
++#else
++    int16x8_t zeroMask = vreinterpretq_s16_u16(vceqq_s16(b, vdupq_n_s16(0)));
++#endif
++
++    // bitwise select either a or negative 'a' (vnegq_s16(a) equals to negative
++    // 'a') based on ltMask
++    int16x8_t masked = vbslq_s16(ltMask, vnegq_s16(a), a);
++    // res = masked & (~zeroMask)
++    int16x8_t res = vbicq_s16(masked, zeroMask);
++    return vreinterpretq_m128i_s16(res);
++}
++
++// Negate packed 32-bit integers in a when the corresponding signed
++// 32-bit integer in b is negative, and store the results in dst.
++// Element in dst are zeroed out when the corresponding element
++// in b is zero.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sign_epi32
++FORCE_INLINE __m128i _mm_sign_epi32(__m128i _a, __m128i _b)
++{
++    int32x4_t a = vreinterpretq_s32_m128i(_a);
++    int32x4_t b = vreinterpretq_s32_m128i(_b);
++
++    // signed shift right: faster than vclt
++    // (b < 0) ? 0xFFFFFFFF : 0
++    uint32x4_t ltMask = vreinterpretq_u32_s32(vshrq_n_s32(b, 31));
++
++    // (b == 0) ? 0xFFFFFFFF : 0
++#if defined(__aarch64__) || defined(_M_ARM64)
++    int32x4_t zeroMask = vreinterpretq_s32_u32(vceqzq_s32(b));
++#else
++    int32x4_t zeroMask = vreinterpretq_s32_u32(vceqq_s32(b, vdupq_n_s32(0)));
++#endif
++
++    // bitwise select either a or negative 'a' (vnegq_s32(a) equals to negative
++    // 'a') based on ltMask
++    int32x4_t masked = vbslq_s32(ltMask, vnegq_s32(a), a);
++    // res = masked & (~zeroMask)
++    int32x4_t res = vbicq_s32(masked, zeroMask);
++    return vreinterpretq_m128i_s32(res);
++}
++
++// Negate packed 8-bit integers in a when the corresponding signed
++// 8-bit integer in b is negative, and store the results in dst.
++// Element in dst are zeroed out when the corresponding element
++// in b is zero.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sign_epi8
++FORCE_INLINE __m128i _mm_sign_epi8(__m128i _a, __m128i _b)
++{
++    int8x16_t a = vreinterpretq_s8_m128i(_a);
++    int8x16_t b = vreinterpretq_s8_m128i(_b);
++
++    // signed shift right: faster than vclt
++    // (b < 0) ? 0xFF : 0
++    uint8x16_t ltMask = vreinterpretq_u8_s8(vshrq_n_s8(b, 7));
++
++    // (b == 0) ? 0xFF : 0
++#if defined(__aarch64__) || defined(_M_ARM64)
++    int8x16_t zeroMask = vreinterpretq_s8_u8(vceqzq_s8(b));
++#else
++    int8x16_t zeroMask = vreinterpretq_s8_u8(vceqq_s8(b, vdupq_n_s8(0)));
++#endif
++
++    // bitwise select either a or negative 'a' (vnegq_s8(a) return negative 'a')
++    // based on ltMask
++    int8x16_t masked = vbslq_s8(ltMask, vnegq_s8(a), a);
++    // res = masked & (~zeroMask)
++    int8x16_t res = vbicq_s8(masked, zeroMask);
++
++    return vreinterpretq_m128i_s8(res);
++}
++
++// Negate packed 16-bit integers in a when the corresponding signed 16-bit
++// integer in b is negative, and store the results in dst. Element in dst are
++// zeroed out when the corresponding element in b is zero.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sign_pi16
++FORCE_INLINE __m64 _mm_sign_pi16(__m64 _a, __m64 _b)
++{
++    int16x4_t a = vreinterpret_s16_m64(_a);
++    int16x4_t b = vreinterpret_s16_m64(_b);
++
++    // signed shift right: faster than vclt
++    // (b < 0) ? 0xFFFF : 0
++    uint16x4_t ltMask = vreinterpret_u16_s16(vshr_n_s16(b, 15));
++
++    // (b == 0) ? 0xFFFF : 0
++#if defined(__aarch64__) || defined(_M_ARM64)
++    int16x4_t zeroMask = vreinterpret_s16_u16(vceqz_s16(b));
++#else
++    int16x4_t zeroMask = vreinterpret_s16_u16(vceq_s16(b, vdup_n_s16(0)));
++#endif
++
++    // bitwise select either a or negative 'a' (vneg_s16(a) return negative 'a')
++    // based on ltMask
++    int16x4_t masked = vbsl_s16(ltMask, vneg_s16(a), a);
++    // res = masked & (~zeroMask)
++    int16x4_t res = vbic_s16(masked, zeroMask);
++
++    return vreinterpret_m64_s16(res);
++}
++
++// Negate packed 32-bit integers in a when the corresponding signed 32-bit
++// integer in b is negative, and store the results in dst. Element in dst are
++// zeroed out when the corresponding element in b is zero.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sign_pi32
++FORCE_INLINE __m64 _mm_sign_pi32(__m64 _a, __m64 _b)
++{
++    int32x2_t a = vreinterpret_s32_m64(_a);
++    int32x2_t b = vreinterpret_s32_m64(_b);
++
++    // signed shift right: faster than vclt
++    // (b < 0) ? 0xFFFFFFFF : 0
++    uint32x2_t ltMask = vreinterpret_u32_s32(vshr_n_s32(b, 31));
++
++    // (b == 0) ? 0xFFFFFFFF : 0
++#if defined(__aarch64__) || defined(_M_ARM64)
++    int32x2_t zeroMask = vreinterpret_s32_u32(vceqz_s32(b));
++#else
++    int32x2_t zeroMask = vreinterpret_s32_u32(vceq_s32(b, vdup_n_s32(0)));
++#endif
++
++    // bitwise select either a or negative 'a' (vneg_s32(a) return negative 'a')
++    // based on ltMask
++    int32x2_t masked = vbsl_s32(ltMask, vneg_s32(a), a);
++    // res = masked & (~zeroMask)
++    int32x2_t res = vbic_s32(masked, zeroMask);
++
++    return vreinterpret_m64_s32(res);
++}
++
++// Negate packed 8-bit integers in a when the corresponding signed 8-bit integer
++// in b is negative, and store the results in dst. Element in dst are zeroed out
++// when the corresponding element in b is zero.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_sign_pi8
++FORCE_INLINE __m64 _mm_sign_pi8(__m64 _a, __m64 _b)
++{
++    int8x8_t a = vreinterpret_s8_m64(_a);
++    int8x8_t b = vreinterpret_s8_m64(_b);
++
++    // signed shift right: faster than vclt
++    // (b < 0) ? 0xFF : 0
++    uint8x8_t ltMask = vreinterpret_u8_s8(vshr_n_s8(b, 7));
++
++    // (b == 0) ? 0xFF : 0
++#if defined(__aarch64__) || defined(_M_ARM64)
++    int8x8_t zeroMask = vreinterpret_s8_u8(vceqz_s8(b));
++#else
++    int8x8_t zeroMask = vreinterpret_s8_u8(vceq_s8(b, vdup_n_s8(0)));
++#endif
++
++    // bitwise select either a or negative 'a' (vneg_s8(a) return negative 'a')
++    // based on ltMask
++    int8x8_t masked = vbsl_s8(ltMask, vneg_s8(a), a);
++    // res = masked & (~zeroMask)
++    int8x8_t res = vbic_s8(masked, zeroMask);
++
++    return vreinterpret_m64_s8(res);
++}
++
++/* SSE4.1 */
++
++// Blend packed 16-bit integers from a and b using control mask imm8, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_blend_epi16
++// FORCE_INLINE __m128i _mm_blend_epi16(__m128i a, __m128i b,
++//                                      __constrange(0,255) int imm)
++#define _mm_blend_epi16(a, b, imm)                                      \
++    _sse2neon_define2(                                                  \
++        __m128i, a, b,                                                  \
++        const uint16_t _mask[8] =                                       \
++            _sse2neon_init(((imm) & (1 << 0)) ? (uint16_t) -1 : 0x0,    \
++                           ((imm) & (1 << 1)) ? (uint16_t) -1 : 0x0,    \
++                           ((imm) & (1 << 2)) ? (uint16_t) -1 : 0x0,    \
++                           ((imm) & (1 << 3)) ? (uint16_t) -1 : 0x0,    \
++                           ((imm) & (1 << 4)) ? (uint16_t) -1 : 0x0,    \
++                           ((imm) & (1 << 5)) ? (uint16_t) -1 : 0x0,    \
++                           ((imm) & (1 << 6)) ? (uint16_t) -1 : 0x0,    \
++                           ((imm) & (1 << 7)) ? (uint16_t) -1 : 0x0);   \
++        uint16x8_t _mask_vec = vld1q_u16(_mask);                        \
++        uint16x8_t __a = vreinterpretq_u16_m128i(_a);                   \
++        uint16x8_t __b = vreinterpretq_u16_m128i(_b); _sse2neon_return( \
++            vreinterpretq_m128i_u16(vbslq_u16(_mask_vec, __b, __a)));)
++
++// Blend packed double-precision (64-bit) floating-point elements from a and b
++// using control mask imm8, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_blend_pd
++#define _mm_blend_pd(a, b, imm)                                              \
++    _sse2neon_define2(                                                       \
++        __m128d, a, b,                                                       \
++        const uint64_t _mask[2] =                                            \
++            _sse2neon_init(((imm) & (1 << 0)) ? ~UINT64_C(0) : UINT64_C(0),  \
++                           ((imm) & (1 << 1)) ? ~UINT64_C(0) : UINT64_C(0)); \
++        uint64x2_t _mask_vec = vld1q_u64(_mask);                             \
++        uint64x2_t __a = vreinterpretq_u64_m128d(_a);                        \
++        uint64x2_t __b = vreinterpretq_u64_m128d(_b); _sse2neon_return(      \
++            vreinterpretq_m128d_u64(vbslq_u64(_mask_vec, __b, __a)));)
++
++// Blend packed single-precision (32-bit) floating-point elements from a and b
++// using mask, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_blend_ps
++FORCE_INLINE __m128 _mm_blend_ps(__m128 _a, __m128 _b, const char imm8)
++{
++    const uint32_t ALIGN_STRUCT(16)
++        data[4] = {((imm8) & (1 << 0)) ? UINT32_MAX : 0,
++                   ((imm8) & (1 << 1)) ? UINT32_MAX : 0,
++                   ((imm8) & (1 << 2)) ? UINT32_MAX : 0,
++                   ((imm8) & (1 << 3)) ? UINT32_MAX : 0};
++    uint32x4_t mask = vld1q_u32(data);
++    float32x4_t a = vreinterpretq_f32_m128(_a);
++    float32x4_t b = vreinterpretq_f32_m128(_b);
++    return vreinterpretq_m128_f32(vbslq_f32(mask, b, a));
++}
++
++// Blend packed 8-bit integers from a and b using mask, and store the results in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_blendv_epi8
++FORCE_INLINE __m128i _mm_blendv_epi8(__m128i _a, __m128i _b, __m128i _mask)
++{
++    // Use a signed shift right to create a mask with the sign bit
++    uint8x16_t mask =
++        vreinterpretq_u8_s8(vshrq_n_s8(vreinterpretq_s8_m128i(_mask), 7));
++    uint8x16_t a = vreinterpretq_u8_m128i(_a);
++    uint8x16_t b = vreinterpretq_u8_m128i(_b);
++    return vreinterpretq_m128i_u8(vbslq_u8(mask, b, a));
++}
++
++// Blend packed double-precision (64-bit) floating-point elements from a and b
++// using mask, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_blendv_pd
++FORCE_INLINE __m128d _mm_blendv_pd(__m128d _a, __m128d _b, __m128d _mask)
++{
++    uint64x2_t mask =
++        vreinterpretq_u64_s64(vshrq_n_s64(vreinterpretq_s64_m128d(_mask), 63));
++#if defined(__aarch64__) || defined(_M_ARM64)
++    float64x2_t a = vreinterpretq_f64_m128d(_a);
++    float64x2_t b = vreinterpretq_f64_m128d(_b);
++    return vreinterpretq_m128d_f64(vbslq_f64(mask, b, a));
++#else
++    uint64x2_t a = vreinterpretq_u64_m128d(_a);
++    uint64x2_t b = vreinterpretq_u64_m128d(_b);
++    return vreinterpretq_m128d_u64(vbslq_u64(mask, b, a));
++#endif
++}
++
++// Blend packed single-precision (32-bit) floating-point elements from a and b
++// using mask, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_blendv_ps
++FORCE_INLINE __m128 _mm_blendv_ps(__m128 _a, __m128 _b, __m128 _mask)
++{
++    // Use a signed shift right to create a mask with the sign bit
++    uint32x4_t mask =
++        vreinterpretq_u32_s32(vshrq_n_s32(vreinterpretq_s32_m128(_mask), 31));
++    float32x4_t a = vreinterpretq_f32_m128(_a);
++    float32x4_t b = vreinterpretq_f32_m128(_b);
++    return vreinterpretq_m128_f32(vbslq_f32(mask, b, a));
++}
++
++// Round the packed double-precision (64-bit) floating-point elements in a up
++// to an integer value, and store the results as packed double-precision
++// floating-point elements in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_ceil_pd
++FORCE_INLINE __m128d _mm_ceil_pd(__m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(vrndpq_f64(vreinterpretq_f64_m128d(a)));
++#else
++    double *f = (double *) &a;
++    return _mm_set_pd(ceil(f[1]), ceil(f[0]));
++#endif
++}
++
++// Round the packed single-precision (32-bit) floating-point elements in a up to
++// an integer value, and store the results as packed single-precision
++// floating-point elements in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_ceil_ps
++FORCE_INLINE __m128 _mm_ceil_ps(__m128 a)
++{
++#if (defined(__aarch64__) || defined(_M_ARM64)) || \
++    defined(__ARM_FEATURE_DIRECTED_ROUNDING)
++    return vreinterpretq_m128_f32(vrndpq_f32(vreinterpretq_f32_m128(a)));
++#else
++    float *f = (float *) &a;
++    return _mm_set_ps(ceilf(f[3]), ceilf(f[2]), ceilf(f[1]), ceilf(f[0]));
++#endif
++}
++
++// Round the lower double-precision (64-bit) floating-point element in b up to
++// an integer value, store the result as a double-precision floating-point
++// element in the lower element of dst, and copy the upper element from a to the
++// upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_ceil_sd
++FORCE_INLINE __m128d _mm_ceil_sd(__m128d a, __m128d b)
++{
++    return _mm_move_sd(a, _mm_ceil_pd(b));
++}
++
++// Round the lower single-precision (32-bit) floating-point element in b up to
++// an integer value, store the result as a single-precision floating-point
++// element in the lower element of dst, and copy the upper 3 packed elements
++// from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_ceil_ss
++FORCE_INLINE __m128 _mm_ceil_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_ceil_ps(b));
++}
++
++// Compare packed 64-bit integers in a and b for equality, and store the results
++// in dst
++FORCE_INLINE __m128i _mm_cmpeq_epi64(__m128i a, __m128i b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_u64(
++        vceqq_u64(vreinterpretq_u64_m128i(a), vreinterpretq_u64_m128i(b)));
++#else
++    // ARMv7 lacks vceqq_u64
++    // (a == b) -> (a_lo == b_lo) && (a_hi == b_hi)
++    uint32x4_t cmp =
++        vceqq_u32(vreinterpretq_u32_m128i(a), vreinterpretq_u32_m128i(b));
++    uint32x4_t swapped = vrev64q_u32(cmp);
++    return vreinterpretq_m128i_u32(vandq_u32(cmp, swapped));
++#endif
++}
++
++// Sign extend packed 16-bit integers in a to packed 32-bit integers, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepi16_epi32
++FORCE_INLINE __m128i _mm_cvtepi16_epi32(__m128i a)
++{
++    return vreinterpretq_m128i_s32(
++        vmovl_s16(vget_low_s16(vreinterpretq_s16_m128i(a))));
++}
++
++// Sign extend packed 16-bit integers in a to packed 64-bit integers, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepi16_epi64
++FORCE_INLINE __m128i _mm_cvtepi16_epi64(__m128i a)
++{
++    int16x8_t s16x8 = vreinterpretq_s16_m128i(a);     /* xxxx xxxx xxxx 0B0A */
++    int32x4_t s32x4 = vmovl_s16(vget_low_s16(s16x8)); /* 000x 000x 000B 000A */
++    int64x2_t s64x2 = vmovl_s32(vget_low_s32(s32x4)); /* 0000 000B 0000 000A */
++    return vreinterpretq_m128i_s64(s64x2);
++}
++
++// Sign extend packed 32-bit integers in a to packed 64-bit integers, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepi32_epi64
++FORCE_INLINE __m128i _mm_cvtepi32_epi64(__m128i a)
++{
++    return vreinterpretq_m128i_s64(
++        vmovl_s32(vget_low_s32(vreinterpretq_s32_m128i(a))));
++}
++
++// Sign extend packed 8-bit integers in a to packed 16-bit integers, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepi8_epi16
++FORCE_INLINE __m128i _mm_cvtepi8_epi16(__m128i a)
++{
++    int8x16_t s8x16 = vreinterpretq_s8_m128i(a);    /* xxxx xxxx xxxx DCBA */
++    int16x8_t s16x8 = vmovl_s8(vget_low_s8(s8x16)); /* 0x0x 0x0x 0D0C 0B0A */
++    return vreinterpretq_m128i_s16(s16x8);
++}
++
++// Sign extend packed 8-bit integers in a to packed 32-bit integers, and store
++// the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepi8_epi32
++FORCE_INLINE __m128i _mm_cvtepi8_epi32(__m128i a)
++{
++    int8x16_t s8x16 = vreinterpretq_s8_m128i(a);      /* xxxx xxxx xxxx DCBA */
++    int16x8_t s16x8 = vmovl_s8(vget_low_s8(s8x16));   /* 0x0x 0x0x 0D0C 0B0A */
++    int32x4_t s32x4 = vmovl_s16(vget_low_s16(s16x8)); /* 000D 000C 000B 000A */
++    return vreinterpretq_m128i_s32(s32x4);
++}
++
++// Sign extend packed 8-bit integers in the low 8 bytes of a to packed 64-bit
++// integers, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepi8_epi64
++FORCE_INLINE __m128i _mm_cvtepi8_epi64(__m128i a)
++{
++    int8x16_t s8x16 = vreinterpretq_s8_m128i(a);      /* xxxx xxxx xxxx xxBA */
++    int16x8_t s16x8 = vmovl_s8(vget_low_s8(s8x16));   /* 0x0x 0x0x 0x0x 0B0A */
++    int32x4_t s32x4 = vmovl_s16(vget_low_s16(s16x8)); /* 000x 000x 000B 000A */
++    int64x2_t s64x2 = vmovl_s32(vget_low_s32(s32x4)); /* 0000 000B 0000 000A */
++    return vreinterpretq_m128i_s64(s64x2);
++}
++
++// Zero extend packed unsigned 16-bit integers in a to packed 32-bit integers,
++// and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepu16_epi32
++FORCE_INLINE __m128i _mm_cvtepu16_epi32(__m128i a)
++{
++    return vreinterpretq_m128i_u32(
++        vmovl_u16(vget_low_u16(vreinterpretq_u16_m128i(a))));
++}
++
++// Zero extend packed unsigned 16-bit integers in a to packed 64-bit integers,
++// and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepu16_epi64
++FORCE_INLINE __m128i _mm_cvtepu16_epi64(__m128i a)
++{
++    uint16x8_t u16x8 = vreinterpretq_u16_m128i(a);     /* xxxx xxxx xxxx 0B0A */
++    uint32x4_t u32x4 = vmovl_u16(vget_low_u16(u16x8)); /* 000x 000x 000B 000A */
++    uint64x2_t u64x2 = vmovl_u32(vget_low_u32(u32x4)); /* 0000 000B 0000 000A */
++    return vreinterpretq_m128i_u64(u64x2);
++}
++
++// Zero extend packed unsigned 32-bit integers in a to packed 64-bit integers,
++// and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepu32_epi64
++FORCE_INLINE __m128i _mm_cvtepu32_epi64(__m128i a)
++{
++    return vreinterpretq_m128i_u64(
++        vmovl_u32(vget_low_u32(vreinterpretq_u32_m128i(a))));
++}
++
++// Zero extend packed unsigned 8-bit integers in a to packed 16-bit integers,
++// and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepu8_epi16
++FORCE_INLINE __m128i _mm_cvtepu8_epi16(__m128i a)
++{
++    uint8x16_t u8x16 = vreinterpretq_u8_m128i(a);    /* xxxx xxxx HGFE DCBA */
++    uint16x8_t u16x8 = vmovl_u8(vget_low_u8(u8x16)); /* 0H0G 0F0E 0D0C 0B0A */
++    return vreinterpretq_m128i_u16(u16x8);
++}
++
++// Zero extend packed unsigned 8-bit integers in a to packed 32-bit integers,
++// and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepu8_epi32
++FORCE_INLINE __m128i _mm_cvtepu8_epi32(__m128i a)
++{
++    uint8x16_t u8x16 = vreinterpretq_u8_m128i(a);      /* xxxx xxxx xxxx DCBA */
++    uint16x8_t u16x8 = vmovl_u8(vget_low_u8(u8x16));   /* 0x0x 0x0x 0D0C 0B0A */
++    uint32x4_t u32x4 = vmovl_u16(vget_low_u16(u16x8)); /* 000D 000C 000B 000A */
++    return vreinterpretq_m128i_u32(u32x4);
++}
++
++// Zero extend packed unsigned 8-bit integers in the low 8 bytes of a to packed
++// 64-bit integers, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cvtepu8_epi64
++FORCE_INLINE __m128i _mm_cvtepu8_epi64(__m128i a)
++{
++    uint8x16_t u8x16 = vreinterpretq_u8_m128i(a);      /* xxxx xxxx xxxx xxBA */
++    uint16x8_t u16x8 = vmovl_u8(vget_low_u8(u8x16));   /* 0x0x 0x0x 0x0x 0B0A */
++    uint32x4_t u32x4 = vmovl_u16(vget_low_u16(u16x8)); /* 000x 000x 000B 000A */
++    uint64x2_t u64x2 = vmovl_u32(vget_low_u32(u32x4)); /* 0000 000B 0000 000A */
++    return vreinterpretq_m128i_u64(u64x2);
++}
++
++// Conditionally multiply the packed double-precision (64-bit) floating-point
++// elements in a and b using the high 4 bits in imm8, sum the four products, and
++// conditionally store the sum in dst using the low 4 bits of imm8.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_dp_pd
++FORCE_INLINE __m128d _mm_dp_pd(__m128d a, __m128d b, const int imm)
++{
++    // Generate mask value from constant immediate bit value
++    const int64_t bit0Mask = imm & 0x01 ? UINT64_MAX : 0;
++    const int64_t bit1Mask = imm & 0x02 ? UINT64_MAX : 0;
++#if !SSE2NEON_PRECISE_DP
++    const int64_t bit4Mask = imm & 0x10 ? UINT64_MAX : 0;
++    const int64_t bit5Mask = imm & 0x20 ? UINT64_MAX : 0;
++#endif
++    // Conditional multiplication
++#if !SSE2NEON_PRECISE_DP
++    __m128d mul = _mm_mul_pd(a, b);
++    const __m128d mulMask =
++        _mm_castsi128_pd(_mm_set_epi64x(bit5Mask, bit4Mask));
++    __m128d tmp = _mm_and_pd(mul, mulMask);
++#else
++#if defined(__aarch64__) || defined(_M_ARM64)
++    double d0 = (imm & 0x10) ? vgetq_lane_f64(vreinterpretq_f64_m128d(a), 0) *
++                                   vgetq_lane_f64(vreinterpretq_f64_m128d(b), 0)
++                             : 0;
++    double d1 = (imm & 0x20) ? vgetq_lane_f64(vreinterpretq_f64_m128d(a), 1) *
++                                   vgetq_lane_f64(vreinterpretq_f64_m128d(b), 1)
++                             : 0;
++#else
++    double d0 = (imm & 0x10) ? ((double *) &a)[0] * ((double *) &b)[0] : 0;
++    double d1 = (imm & 0x20) ? ((double *) &a)[1] * ((double *) &b)[1] : 0;
++#endif
++    __m128d tmp = _mm_set_pd(d1, d0);
++#endif
++    // Sum the products
++#if defined(__aarch64__) || defined(_M_ARM64)
++    double sum = vpaddd_f64(vreinterpretq_f64_m128d(tmp));
++#else
++    double sum = *((double *) &tmp) + *(((double *) &tmp) + 1);
++#endif
++    // Conditionally store the sum
++    const __m128d sumMask =
++        _mm_castsi128_pd(_mm_set_epi64x(bit1Mask, bit0Mask));
++    __m128d res = _mm_and_pd(_mm_set_pd1(sum), sumMask);
++    return res;
++}
++
++// Conditionally multiply the packed single-precision (32-bit) floating-point
++// elements in a and b using the high 4 bits in imm8, sum the four products,
++// and conditionally store the sum in dst using the low 4 bits of imm.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_dp_ps
++FORCE_INLINE __m128 _mm_dp_ps(__m128 a, __m128 b, const int imm)
++{
++    float32x4_t elementwise_prod = _mm_mul_ps(a, b);
++
++#if defined(__aarch64__) || defined(_M_ARM64)
++    /* shortcuts */
++    if (imm == 0xFF) {
++        return _mm_set1_ps(vaddvq_f32(elementwise_prod));
++    }
++
++    if ((imm & 0x0F) == 0x0F) {
++        if (!(imm & (1 << 4)))
++            elementwise_prod = vsetq_lane_f32(0.0f, elementwise_prod, 0);
++        if (!(imm & (1 << 5)))
++            elementwise_prod = vsetq_lane_f32(0.0f, elementwise_prod, 1);
++        if (!(imm & (1 << 6)))
++            elementwise_prod = vsetq_lane_f32(0.0f, elementwise_prod, 2);
++        if (!(imm & (1 << 7)))
++            elementwise_prod = vsetq_lane_f32(0.0f, elementwise_prod, 3);
++
++        return _mm_set1_ps(vaddvq_f32(elementwise_prod));
++    }
++#endif
++
++    float s = 0.0f;
++
++    if (imm & (1 << 4))
++        s += vgetq_lane_f32(elementwise_prod, 0);
++    if (imm & (1 << 5))
++        s += vgetq_lane_f32(elementwise_prod, 1);
++    if (imm & (1 << 6))
++        s += vgetq_lane_f32(elementwise_prod, 2);
++    if (imm & (1 << 7))
++        s += vgetq_lane_f32(elementwise_prod, 3);
++
++    const float32_t res[4] = {
++        (imm & 0x1) ? s : 0.0f,
++        (imm & 0x2) ? s : 0.0f,
++        (imm & 0x4) ? s : 0.0f,
++        (imm & 0x8) ? s : 0.0f,
++    };
++    return vreinterpretq_m128_f32(vld1q_f32(res));
++}
++
++// Extract a 32-bit integer from a, selected with imm8, and store the result in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_extract_epi32
++// FORCE_INLINE int _mm_extract_epi32(__m128i a, __constrange(0,4) int imm)
++#define _mm_extract_epi32(a, imm) \
++    vgetq_lane_s32(vreinterpretq_s32_m128i(a), (imm))
++
++// Extract a 64-bit integer from a, selected with imm8, and store the result in
++// dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_extract_epi64
++// FORCE_INLINE __int64 _mm_extract_epi64(__m128i a, __constrange(0,2) int imm)
++#define _mm_extract_epi64(a, imm) \
++    vgetq_lane_s64(vreinterpretq_s64_m128i(a), (imm))
++
++// Extract an 8-bit integer from a, selected with imm8, and store the result in
++// the lower element of dst. FORCE_INLINE int _mm_extract_epi8(__m128i a,
++// __constrange(0,16) int imm)
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_extract_epi8
++#define _mm_extract_epi8(a, imm) vgetq_lane_u8(vreinterpretq_u8_m128i(a), (imm))
++
++// Extracts the selected single-precision (32-bit) floating-point from a.
++// FORCE_INLINE int _mm_extract_ps(__m128 a, __constrange(0,4) int imm)
++#define _mm_extract_ps(a, imm) vgetq_lane_s32(vreinterpretq_s32_m128(a), (imm))
++
++// Round the packed double-precision (64-bit) floating-point elements in a down
++// to an integer value, and store the results as packed double-precision
++// floating-point elements in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_floor_pd
++FORCE_INLINE __m128d _mm_floor_pd(__m128d a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128d_f64(vrndmq_f64(vreinterpretq_f64_m128d(a)));
++#else
++    double *f = (double *) &a;
++    return _mm_set_pd(floor(f[1]), floor(f[0]));
++#endif
++}
++
++// Round the packed single-precision (32-bit) floating-point elements in a down
++// to an integer value, and store the results as packed single-precision
++// floating-point elements in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_floor_ps
++FORCE_INLINE __m128 _mm_floor_ps(__m128 a)
++{
++#if (defined(__aarch64__) || defined(_M_ARM64)) || \
++    defined(__ARM_FEATURE_DIRECTED_ROUNDING)
++    return vreinterpretq_m128_f32(vrndmq_f32(vreinterpretq_f32_m128(a)));
++#else
++    float *f = (float *) &a;
++    return _mm_set_ps(floorf(f[3]), floorf(f[2]), floorf(f[1]), floorf(f[0]));
++#endif
++}
++
++// Round the lower double-precision (64-bit) floating-point element in b down to
++// an integer value, store the result as a double-precision floating-point
++// element in the lower element of dst, and copy the upper element from a to the
++// upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_floor_sd
++FORCE_INLINE __m128d _mm_floor_sd(__m128d a, __m128d b)
++{
++    return _mm_move_sd(a, _mm_floor_pd(b));
++}
++
++// Round the lower single-precision (32-bit) floating-point element in b down to
++// an integer value, store the result as a single-precision floating-point
++// element in the lower element of dst, and copy the upper 3 packed elements
++// from a to the upper elements of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_floor_ss
++FORCE_INLINE __m128 _mm_floor_ss(__m128 a, __m128 b)
++{
++    return _mm_move_ss(a, _mm_floor_ps(b));
++}
++
++// Copy a to dst, and insert the 32-bit integer i into dst at the location
++// specified by imm8.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_insert_epi32
++// FORCE_INLINE __m128i _mm_insert_epi32(__m128i a, int b,
++//                                       __constrange(0,4) int imm)
++#define _mm_insert_epi32(a, b, imm) \
++    vreinterpretq_m128i_s32(        \
++        vsetq_lane_s32((b), vreinterpretq_s32_m128i(a), (imm)))
++
++// Copy a to dst, and insert the 64-bit integer i into dst at the location
++// specified by imm8.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_insert_epi64
++// FORCE_INLINE __m128i _mm_insert_epi64(__m128i a, __int64 b,
++//                                       __constrange(0,2) int imm)
++#define _mm_insert_epi64(a, b, imm) \
++    vreinterpretq_m128i_s64(        \
++        vsetq_lane_s64((b), vreinterpretq_s64_m128i(a), (imm)))
++
++// Copy a to dst, and insert the lower 8-bit integer from i into dst at the
++// location specified by imm8.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_insert_epi8
++// FORCE_INLINE __m128i _mm_insert_epi8(__m128i a, int b,
++//                                      __constrange(0,16) int imm)
++#define _mm_insert_epi8(a, b, imm) \
++    vreinterpretq_m128i_s8(vsetq_lane_s8((b), vreinterpretq_s8_m128i(a), (imm)))
++
++// Copy a to tmp, then insert a single-precision (32-bit) floating-point
++// element from b into tmp using the control in imm8. Store tmp to dst using
++// the mask in imm8 (elements are zeroed out when the corresponding bit is set).
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=insert_ps
++#define _mm_insert_ps(a, b, imm8)                                            \
++    _sse2neon_define2(                                                       \
++        __m128, a, b,                                                        \
++        float32x4_t tmp1 =                                                   \
++            vsetq_lane_f32(vgetq_lane_f32(_b, (imm8 >> 6) & 0x3),            \
++                           vreinterpretq_f32_m128(_a), 0);                   \
++        float32x4_t tmp2 =                                                   \
++            vsetq_lane_f32(vgetq_lane_f32(tmp1, 0),                          \
++                           vreinterpretq_f32_m128(_a), ((imm8 >> 4) & 0x3)); \
++        const uint32_t data[4] =                                             \
++            _sse2neon_init(((imm8) & (1 << 0)) ? UINT32_MAX : 0,             \
++                           ((imm8) & (1 << 1)) ? UINT32_MAX : 0,             \
++                           ((imm8) & (1 << 2)) ? UINT32_MAX : 0,             \
++                           ((imm8) & (1 << 3)) ? UINT32_MAX : 0);            \
++        uint32x4_t mask = vld1q_u32(data);                                   \
++        float32x4_t all_zeros = vdupq_n_f32(0);                              \
++                                                                             \
++        _sse2neon_return(vreinterpretq_m128_f32(                             \
++            vbslq_f32(mask, all_zeros, vreinterpretq_f32_m128(tmp2))));)
++
++// Compare packed signed 32-bit integers in a and b, and store packed maximum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_epi32
++FORCE_INLINE __m128i _mm_max_epi32(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s32(
++        vmaxq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++}
++
++// Compare packed signed 8-bit integers in a and b, and store packed maximum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_epi8
++FORCE_INLINE __m128i _mm_max_epi8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s8(
++        vmaxq_s8(vreinterpretq_s8_m128i(a), vreinterpretq_s8_m128i(b)));
++}
++
++// Compare packed unsigned 16-bit integers in a and b, and store packed maximum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_epu16
++FORCE_INLINE __m128i _mm_max_epu16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u16(
++        vmaxq_u16(vreinterpretq_u16_m128i(a), vreinterpretq_u16_m128i(b)));
++}
++
++// Compare packed unsigned 32-bit integers in a and b, and store packed maximum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_epu32
++FORCE_INLINE __m128i _mm_max_epu32(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u32(
++        vmaxq_u32(vreinterpretq_u32_m128i(a), vreinterpretq_u32_m128i(b)));
++}
++
++// Compare packed signed 32-bit integers in a and b, and store packed minimum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_min_epi32
++FORCE_INLINE __m128i _mm_min_epi32(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s32(
++        vminq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++}
++
++// Compare packed signed 8-bit integers in a and b, and store packed minimum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_min_epi8
++FORCE_INLINE __m128i _mm_min_epi8(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s8(
++        vminq_s8(vreinterpretq_s8_m128i(a), vreinterpretq_s8_m128i(b)));
++}
++
++// Compare packed unsigned 16-bit integers in a and b, and store packed minimum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_min_epu16
++FORCE_INLINE __m128i _mm_min_epu16(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u16(
++        vminq_u16(vreinterpretq_u16_m128i(a), vreinterpretq_u16_m128i(b)));
++}
++
++// Compare packed unsigned 32-bit integers in a and b, and store packed minimum
++// values in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_max_epu32
++FORCE_INLINE __m128i _mm_min_epu32(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u32(
++        vminq_u32(vreinterpretq_u32_m128i(a), vreinterpretq_u32_m128i(b)));
++}
++
++// Horizontally compute the minimum amongst the packed unsigned 16-bit integers
++// in a, store the minimum and index in dst, and zero the remaining bits in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_minpos_epu16
++FORCE_INLINE __m128i _mm_minpos_epu16(__m128i a)
++{
++    __m128i dst;
++    uint16_t min, idx = 0;
++#if defined(__aarch64__) || defined(_M_ARM64)
++    // Find the minimum value
++    min = vminvq_u16(vreinterpretq_u16_m128i(a));
++
++    // Get the index of the minimum value
++    static const uint16_t idxv[] = {0, 1, 2, 3, 4, 5, 6, 7};
++    uint16x8_t minv = vdupq_n_u16(min);
++    uint16x8_t cmeq = vceqq_u16(minv, vreinterpretq_u16_m128i(a));
++    idx = vminvq_u16(vornq_u16(vld1q_u16(idxv), cmeq));
++#else
++    // Find the minimum value
++    __m64 tmp;
++    tmp = vreinterpret_m64_u16(
++        vmin_u16(vget_low_u16(vreinterpretq_u16_m128i(a)),
++                 vget_high_u16(vreinterpretq_u16_m128i(a))));
++    tmp = vreinterpret_m64_u16(
++        vpmin_u16(vreinterpret_u16_m64(tmp), vreinterpret_u16_m64(tmp)));
++    tmp = vreinterpret_m64_u16(
++        vpmin_u16(vreinterpret_u16_m64(tmp), vreinterpret_u16_m64(tmp)));
++    min = vget_lane_u16(vreinterpret_u16_m64(tmp), 0);
++    // Get the index of the minimum value
++    int i;
++    for (i = 0; i < 8; i++) {
++        if (min == vgetq_lane_u16(vreinterpretq_u16_m128i(a), 0)) {
++            idx = (uint16_t) i;
++            break;
++        }
++        a = _mm_srli_si128(a, 2);
++    }
++#endif
++    // Generate result
++    dst = _mm_setzero_si128();
++    dst = vreinterpretq_m128i_u16(
++        vsetq_lane_u16(min, vreinterpretq_u16_m128i(dst), 0));
++    dst = vreinterpretq_m128i_u16(
++        vsetq_lane_u16(idx, vreinterpretq_u16_m128i(dst), 1));
++    return dst;
++}
++
++// Compute the sum of absolute differences (SADs) of quadruplets of unsigned
++// 8-bit integers in a compared to those in b, and store the 16-bit results in
++// dst. Eight SADs are performed using one quadruplet from b and eight
++// quadruplets from a. One quadruplet is selected from b starting at on the
++// offset specified in imm8. Eight quadruplets are formed from sequential 8-bit
++// integers selected from a starting at the offset specified in imm8.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mpsadbw_epu8
++FORCE_INLINE __m128i _mm_mpsadbw_epu8(__m128i a, __m128i b, const int imm)
++{
++    uint8x16_t _a, _b;
++
++    switch (imm & 0x4) {
++    case 0:
++        // do nothing
++        _a = vreinterpretq_u8_m128i(a);
++        break;
++    case 4:
++        _a = vreinterpretq_u8_u32(vextq_u32(vreinterpretq_u32_m128i(a),
++                                            vreinterpretq_u32_m128i(a), 1));
++        break;
++    default:
++#if defined(__GNUC__) || defined(__clang__)
++        __builtin_unreachable();
++#elif defined(_MSC_VER)
++        __assume(0);
++#endif
++        break;
++    }
++
++    switch (imm & 0x3) {
++    case 0:
++        _b = vreinterpretq_u8_u32(
++            vdupq_n_u32(vgetq_lane_u32(vreinterpretq_u32_m128i(b), 0)));
++        break;
++    case 1:
++        _b = vreinterpretq_u8_u32(
++            vdupq_n_u32(vgetq_lane_u32(vreinterpretq_u32_m128i(b), 1)));
++        break;
++    case 2:
++        _b = vreinterpretq_u8_u32(
++            vdupq_n_u32(vgetq_lane_u32(vreinterpretq_u32_m128i(b), 2)));
++        break;
++    case 3:
++        _b = vreinterpretq_u8_u32(
++            vdupq_n_u32(vgetq_lane_u32(vreinterpretq_u32_m128i(b), 3)));
++        break;
++    default:
++#if defined(__GNUC__) || defined(__clang__)
++        __builtin_unreachable();
++#elif defined(_MSC_VER)
++        __assume(0);
++#endif
++        break;
++    }
++
++    int16x8_t c04, c15, c26, c37;
++    uint8x8_t low_b = vget_low_u8(_b);
++    c04 = vreinterpretq_s16_u16(vabdl_u8(vget_low_u8(_a), low_b));
++    uint8x16_t _a_1 = vextq_u8(_a, _a, 1);
++    c15 = vreinterpretq_s16_u16(vabdl_u8(vget_low_u8(_a_1), low_b));
++    uint8x16_t _a_2 = vextq_u8(_a, _a, 2);
++    c26 = vreinterpretq_s16_u16(vabdl_u8(vget_low_u8(_a_2), low_b));
++    uint8x16_t _a_3 = vextq_u8(_a, _a, 3);
++    c37 = vreinterpretq_s16_u16(vabdl_u8(vget_low_u8(_a_3), low_b));
++#if defined(__aarch64__) || defined(_M_ARM64)
++    // |0|4|2|6|
++    c04 = vpaddq_s16(c04, c26);
++    // |1|5|3|7|
++    c15 = vpaddq_s16(c15, c37);
++
++    int32x4_t trn1_c =
++        vtrn1q_s32(vreinterpretq_s32_s16(c04), vreinterpretq_s32_s16(c15));
++    int32x4_t trn2_c =
++        vtrn2q_s32(vreinterpretq_s32_s16(c04), vreinterpretq_s32_s16(c15));
++    return vreinterpretq_m128i_s16(vpaddq_s16(vreinterpretq_s16_s32(trn1_c),
++                                              vreinterpretq_s16_s32(trn2_c)));
++#else
++    int16x4_t c01, c23, c45, c67;
++    c01 = vpadd_s16(vget_low_s16(c04), vget_low_s16(c15));
++    c23 = vpadd_s16(vget_low_s16(c26), vget_low_s16(c37));
++    c45 = vpadd_s16(vget_high_s16(c04), vget_high_s16(c15));
++    c67 = vpadd_s16(vget_high_s16(c26), vget_high_s16(c37));
++
++    return vreinterpretq_m128i_s16(
++        vcombine_s16(vpadd_s16(c01, c23), vpadd_s16(c45, c67)));
++#endif
++}
++
++// Multiply the low signed 32-bit integers from each packed 64-bit element in
++// a and b, and store the signed 64-bit results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mul_epi32
++FORCE_INLINE __m128i _mm_mul_epi32(__m128i a, __m128i b)
++{
++    // vmull_s32 upcasts instead of masking, so we downcast.
++    int32x2_t a_lo = vmovn_s64(vreinterpretq_s64_m128i(a));
++    int32x2_t b_lo = vmovn_s64(vreinterpretq_s64_m128i(b));
++    return vreinterpretq_m128i_s64(vmull_s32(a_lo, b_lo));
++}
++
++// Multiply the packed 32-bit integers in a and b, producing intermediate 64-bit
++// integers, and store the low 32 bits of the intermediate integers in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_mullo_epi32
++FORCE_INLINE __m128i _mm_mullo_epi32(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_s32(
++        vmulq_s32(vreinterpretq_s32_m128i(a), vreinterpretq_s32_m128i(b)));
++}
++
++// Convert packed signed 32-bit integers from a and b to packed 16-bit integers
++// using unsigned saturation, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_packus_epi32
++FORCE_INLINE __m128i _mm_packus_epi32(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u16(
++        vcombine_u16(vqmovun_s32(vreinterpretq_s32_m128i(a)),
++                     vqmovun_s32(vreinterpretq_s32_m128i(b))));
++}
++
++// Round the packed double-precision (64-bit) floating-point elements in a using
++// the rounding parameter, and store the results as packed double-precision
++// floating-point elements in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_round_pd
++FORCE_INLINE __m128d _mm_round_pd(__m128d a, int rounding)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    switch (rounding) {
++    case (_MM_FROUND_TO_NEAREST_INT | _MM_FROUND_NO_EXC):
++        return vreinterpretq_m128d_f64(vrndnq_f64(vreinterpretq_f64_m128d(a)));
++    case (_MM_FROUND_TO_NEG_INF | _MM_FROUND_NO_EXC):
++        return _mm_floor_pd(a);
++    case (_MM_FROUND_TO_POS_INF | _MM_FROUND_NO_EXC):
++        return _mm_ceil_pd(a);
++    case (_MM_FROUND_TO_ZERO | _MM_FROUND_NO_EXC):
++        return vreinterpretq_m128d_f64(vrndq_f64(vreinterpretq_f64_m128d(a)));
++    default:  //_MM_FROUND_CUR_DIRECTION
++        return vreinterpretq_m128d_f64(vrndiq_f64(vreinterpretq_f64_m128d(a)));
++    }
++#else
++    double *v_double = (double *) &a;
++
++    if (rounding == (_MM_FROUND_TO_NEAREST_INT | _MM_FROUND_NO_EXC) ||
++        (rounding == _MM_FROUND_CUR_DIRECTION &&
++         _MM_GET_ROUNDING_MODE() == _MM_ROUND_NEAREST)) {
++        double res[2], tmp;
++        for (int i = 0; i < 2; i++) {
++            tmp = (v_double[i] < 0) ? -v_double[i] : v_double[i];
++            double roundDown = floor(tmp);  // Round down value
++            double roundUp = ceil(tmp);     // Round up value
++            double diffDown = tmp - roundDown;
++            double diffUp = roundUp - tmp;
++            if (diffDown < diffUp) {
++                /* If it's closer to the round down value, then use it */
++                res[i] = roundDown;
++            } else if (diffDown > diffUp) {
++                /* If it's closer to the round up value, then use it */
++                res[i] = roundUp;
++            } else {
++                /* If it's equidistant between round up and round down value,
++                 * pick the one which is an even number */
++                double half = roundDown / 2;
++                if (half != floor(half)) {
++                    /* If the round down value is odd, return the round up value
++                     */
++                    res[i] = roundUp;
++                } else {
++                    /* If the round up value is odd, return the round down value
++                     */
++                    res[i] = roundDown;
++                }
++            }
++            res[i] = (v_double[i] < 0) ? -res[i] : res[i];
++        }
++        return _mm_set_pd(res[1], res[0]);
++    } else if (rounding == (_MM_FROUND_TO_NEG_INF | _MM_FROUND_NO_EXC) ||
++               (rounding == _MM_FROUND_CUR_DIRECTION &&
++                _MM_GET_ROUNDING_MODE() == _MM_ROUND_DOWN)) {
++        return _mm_floor_pd(a);
++    } else if (rounding == (_MM_FROUND_TO_POS_INF | _MM_FROUND_NO_EXC) ||
++               (rounding == _MM_FROUND_CUR_DIRECTION &&
++                _MM_GET_ROUNDING_MODE() == _MM_ROUND_UP)) {
++        return _mm_ceil_pd(a);
++    }
++    return _mm_set_pd(v_double[1] > 0 ? floor(v_double[1]) : ceil(v_double[1]),
++                      v_double[0] > 0 ? floor(v_double[0]) : ceil(v_double[0]));
++#endif
++}
++
++// Round the packed single-precision (32-bit) floating-point elements in a using
++// the rounding parameter, and store the results as packed single-precision
++// floating-point elements in dst.
++// software.intel.com/sites/landingpage/IntrinsicsGuide/#text=_mm_round_ps
++FORCE_INLINE __m128 _mm_round_ps(__m128 a, int rounding)
++{
++#if (defined(__aarch64__) || defined(_M_ARM64)) || \
++    defined(__ARM_FEATURE_DIRECTED_ROUNDING)
++    switch (rounding) {
++    case (_MM_FROUND_TO_NEAREST_INT | _MM_FROUND_NO_EXC):
++        return vreinterpretq_m128_f32(vrndnq_f32(vreinterpretq_f32_m128(a)));
++    case (_MM_FROUND_TO_NEG_INF | _MM_FROUND_NO_EXC):
++        return _mm_floor_ps(a);
++    case (_MM_FROUND_TO_POS_INF | _MM_FROUND_NO_EXC):
++        return _mm_ceil_ps(a);
++    case (_MM_FROUND_TO_ZERO | _MM_FROUND_NO_EXC):
++        return vreinterpretq_m128_f32(vrndq_f32(vreinterpretq_f32_m128(a)));
++    default:  //_MM_FROUND_CUR_DIRECTION
++        return vreinterpretq_m128_f32(vrndiq_f32(vreinterpretq_f32_m128(a)));
++    }
++#else
++    float *v_float = (float *) &a;
++
++    if (rounding == (_MM_FROUND_TO_NEAREST_INT | _MM_FROUND_NO_EXC) ||
++        (rounding == _MM_FROUND_CUR_DIRECTION &&
++         _MM_GET_ROUNDING_MODE() == _MM_ROUND_NEAREST)) {
++        uint32x4_t signmask = vdupq_n_u32(0x80000000);
++        float32x4_t half = vbslq_f32(signmask, vreinterpretq_f32_m128(a),
++                                     vdupq_n_f32(0.5f)); /* +/- 0.5 */
++        int32x4_t r_normal = vcvtq_s32_f32(vaddq_f32(
++            vreinterpretq_f32_m128(a), half)); /* round to integer: [a + 0.5]*/
++        int32x4_t r_trunc = vcvtq_s32_f32(
++            vreinterpretq_f32_m128(a)); /* truncate to integer: [a] */
++        int32x4_t plusone = vreinterpretq_s32_u32(vshrq_n_u32(
++            vreinterpretq_u32_s32(vnegq_s32(r_trunc)), 31)); /* 1 or 0 */
++        int32x4_t r_even = vbicq_s32(vaddq_s32(r_trunc, plusone),
++                                     vdupq_n_s32(1)); /* ([a] + {0,1}) & ~1 */
++        float32x4_t delta = vsubq_f32(
++            vreinterpretq_f32_m128(a),
++            vcvtq_f32_s32(r_trunc)); /* compute delta: delta = (a - [a]) */
++        uint32x4_t is_delta_half =
++            vceqq_f32(delta, half); /* delta == +/- 0.5 */
++        return vreinterpretq_m128_f32(
++            vcvtq_f32_s32(vbslq_s32(is_delta_half, r_even, r_normal)));
++    } else if (rounding == (_MM_FROUND_TO_NEG_INF | _MM_FROUND_NO_EXC) ||
++               (rounding == _MM_FROUND_CUR_DIRECTION &&
++                _MM_GET_ROUNDING_MODE() == _MM_ROUND_DOWN)) {
++        return _mm_floor_ps(a);
++    } else if (rounding == (_MM_FROUND_TO_POS_INF | _MM_FROUND_NO_EXC) ||
++               (rounding == _MM_FROUND_CUR_DIRECTION &&
++                _MM_GET_ROUNDING_MODE() == _MM_ROUND_UP)) {
++        return _mm_ceil_ps(a);
++    }
++    return _mm_set_ps(v_float[3] > 0 ? floorf(v_float[3]) : ceilf(v_float[3]),
++                      v_float[2] > 0 ? floorf(v_float[2]) : ceilf(v_float[2]),
++                      v_float[1] > 0 ? floorf(v_float[1]) : ceilf(v_float[1]),
++                      v_float[0] > 0 ? floorf(v_float[0]) : ceilf(v_float[0]));
++#endif
++}
++
++// Round the lower double-precision (64-bit) floating-point element in b using
++// the rounding parameter, store the result as a double-precision floating-point
++// element in the lower element of dst, and copy the upper element from a to the
++// upper element of dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_round_sd
++FORCE_INLINE __m128d _mm_round_sd(__m128d a, __m128d b, int rounding)
++{
++    return _mm_move_sd(a, _mm_round_pd(b, rounding));
++}
++
++// Round the lower single-precision (32-bit) floating-point element in b using
++// the rounding parameter, store the result as a single-precision floating-point
++// element in the lower element of dst, and copy the upper 3 packed elements
++// from a to the upper elements of dst. Rounding is done according to the
++// rounding[3:0] parameter, which can be one of:
++//     (_MM_FROUND_TO_NEAREST_INT |_MM_FROUND_NO_EXC) // round to nearest, and
++//     suppress exceptions
++//     (_MM_FROUND_TO_NEG_INF |_MM_FROUND_NO_EXC)     // round down, and
++//     suppress exceptions
++//     (_MM_FROUND_TO_POS_INF |_MM_FROUND_NO_EXC)     // round up, and suppress
++//     exceptions
++//     (_MM_FROUND_TO_ZERO |_MM_FROUND_NO_EXC)        // truncate, and suppress
++//     exceptions _MM_FROUND_CUR_DIRECTION // use MXCSR.RC; see
++//     _MM_SET_ROUNDING_MODE
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_round_ss
++FORCE_INLINE __m128 _mm_round_ss(__m128 a, __m128 b, int rounding)
++{
++    return _mm_move_ss(a, _mm_round_ps(b, rounding));
++}
++
++// Load 128-bits of integer data from memory into dst using a non-temporal
++// memory hint. mem_addr must be aligned on a 16-byte boundary or a
++// general-protection exception may be generated.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_stream_load_si128
++FORCE_INLINE __m128i _mm_stream_load_si128(__m128i *p)
++{
++#if __has_builtin(__builtin_nontemporal_store)
++    return __builtin_nontemporal_load(p);
++#else
++    return vreinterpretq_m128i_s64(vld1q_s64((int64_t *) p));
++#endif
++}
++
++// Compute the bitwise NOT of a and then AND with a 128-bit vector containing
++// all 1's, and return 1 if the result is zero, otherwise return 0.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_test_all_ones
++FORCE_INLINE int _mm_test_all_ones(__m128i a)
++{
++    return (uint64_t) (vgetq_lane_s64(a, 0) & vgetq_lane_s64(a, 1)) ==
++           ~(uint64_t) 0;
++}
++
++// Compute the bitwise AND of 128 bits (representing integer data) in a and
++// mask, and return 1 if the result is zero, otherwise return 0.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_test_all_zeros
++FORCE_INLINE int _mm_test_all_zeros(__m128i a, __m128i mask)
++{
++    int64x2_t a_and_mask =
++        vandq_s64(vreinterpretq_s64_m128i(a), vreinterpretq_s64_m128i(mask));
++    return !(vgetq_lane_s64(a_and_mask, 0) | vgetq_lane_s64(a_and_mask, 1));
++}
++
++// Compute the bitwise AND of 128 bits (representing integer data) in a and
++// mask, and set ZF to 1 if the result is zero, otherwise set ZF to 0. Compute
++// the bitwise NOT of a and then AND with mask, and set CF to 1 if the result is
++// zero, otherwise set CF to 0. Return 1 if both the ZF and CF values are zero,
++// otherwise return 0.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=mm_test_mix_ones_zero
++// Note: Argument names may be wrong in the Intel intrinsics guide.
++FORCE_INLINE int _mm_test_mix_ones_zeros(__m128i a, __m128i mask)
++{
++    uint64x2_t v = vreinterpretq_u64_m128i(a);
++    uint64x2_t m = vreinterpretq_u64_m128i(mask);
++
++    // find ones (set-bits) and zeros (clear-bits) under clip mask
++    uint64x2_t ones = vandq_u64(m, v);
++    uint64x2_t zeros = vbicq_u64(m, v);
++
++    // If both 128-bit variables are populated (non-zero) then return 1.
++    // For comparision purposes, first compact each var down to 32-bits.
++    uint32x2_t reduced = vpmax_u32(vqmovn_u64(ones), vqmovn_u64(zeros));
++
++    // if folding minimum is non-zero then both vars must be non-zero
++    return (vget_lane_u32(vpmin_u32(reduced, reduced), 0) != 0);
++}
++
++// Compute the bitwise AND of 128 bits (representing integer data) in a and b,
++// and set ZF to 1 if the result is zero, otherwise set ZF to 0. Compute the
++// bitwise NOT of a and then AND with b, and set CF to 1 if the result is zero,
++// otherwise set CF to 0. Return the CF value.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_testc_si128
++FORCE_INLINE int _mm_testc_si128(__m128i a, __m128i b)
++{
++    int64x2_t s64 =
++        vbicq_s64(vreinterpretq_s64_m128i(b), vreinterpretq_s64_m128i(a));
++    return !(vgetq_lane_s64(s64, 0) | vgetq_lane_s64(s64, 1));
++}
++
++// Compute the bitwise AND of 128 bits (representing integer data) in a and b,
++// and set ZF to 1 if the result is zero, otherwise set ZF to 0. Compute the
++// bitwise NOT of a and then AND with b, and set CF to 1 if the result is zero,
++// otherwise set CF to 0. Return 1 if both the ZF and CF values are zero,
++// otherwise return 0.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_testnzc_si128
++#define _mm_testnzc_si128(a, b) _mm_test_mix_ones_zeros(a, b)
++
++// Compute the bitwise AND of 128 bits (representing integer data) in a and b,
++// and set ZF to 1 if the result is zero, otherwise set ZF to 0. Compute the
++// bitwise NOT of a and then AND with b, and set CF to 1 if the result is zero,
++// otherwise set CF to 0. Return the ZF value.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_testz_si128
++FORCE_INLINE int _mm_testz_si128(__m128i a, __m128i b)
++{
++    int64x2_t s64 =
++        vandq_s64(vreinterpretq_s64_m128i(a), vreinterpretq_s64_m128i(b));
++    return !(vgetq_lane_s64(s64, 0) | vgetq_lane_s64(s64, 1));
++}
++
++/* SSE4.2 */
++
++static const uint16_t ALIGN_STRUCT(16) _sse2neon_cmpestr_mask16b[8] = {
++    0x01, 0x02, 0x04, 0x08, 0x10, 0x20, 0x40, 0x80,
++};
++static const uint8_t ALIGN_STRUCT(16) _sse2neon_cmpestr_mask8b[16] = {
++    0x01, 0x02, 0x04, 0x08, 0x10, 0x20, 0x40, 0x80,
++    0x01, 0x02, 0x04, 0x08, 0x10, 0x20, 0x40, 0x80,
++};
++
++/* specify the source data format */
++#define _SIDD_UBYTE_OPS 0x00 /* unsigned 8-bit characters */
++#define _SIDD_UWORD_OPS 0x01 /* unsigned 16-bit characters */
++#define _SIDD_SBYTE_OPS 0x02 /* signed 8-bit characters */
++#define _SIDD_SWORD_OPS 0x03 /* signed 16-bit characters */
++
++/* specify the comparison operation */
++#define _SIDD_CMP_EQUAL_ANY 0x00     /* compare equal any: strchr */
++#define _SIDD_CMP_RANGES 0x04        /* compare ranges */
++#define _SIDD_CMP_EQUAL_EACH 0x08    /* compare equal each: strcmp */
++#define _SIDD_CMP_EQUAL_ORDERED 0x0C /* compare equal ordered */
++
++/* specify the polarity */
++#define _SIDD_POSITIVE_POLARITY 0x00
++#define _SIDD_MASKED_POSITIVE_POLARITY 0x20
++#define _SIDD_NEGATIVE_POLARITY 0x10 /* negate results */
++#define _SIDD_MASKED_NEGATIVE_POLARITY \
++    0x30 /* negate results only before end of string */
++
++/* specify the output selection in _mm_cmpXstri */
++#define _SIDD_LEAST_SIGNIFICANT 0x00
++#define _SIDD_MOST_SIGNIFICANT 0x40
++
++/* specify the output selection in _mm_cmpXstrm */
++#define _SIDD_BIT_MASK 0x00
++#define _SIDD_UNIT_MASK 0x40
++
++/* Pattern Matching for C macros.
++ * https://github.com/pfultz2/Cloak/wiki/C-Preprocessor-tricks,-tips,-and-idioms
++ */
++
++/* catenate */
++#define SSE2NEON_PRIMITIVE_CAT(a, ...) a##__VA_ARGS__
++#define SSE2NEON_CAT(a, b) SSE2NEON_PRIMITIVE_CAT(a, b)
++
++#define SSE2NEON_IIF(c) SSE2NEON_PRIMITIVE_CAT(SSE2NEON_IIF_, c)
++/* run the 2nd parameter */
++#define SSE2NEON_IIF_0(t, ...) __VA_ARGS__
++/* run the 1st parameter */
++#define SSE2NEON_IIF_1(t, ...) t
++
++#define SSE2NEON_COMPL(b) SSE2NEON_PRIMITIVE_CAT(SSE2NEON_COMPL_, b)
++#define SSE2NEON_COMPL_0 1
++#define SSE2NEON_COMPL_1 0
++
++#define SSE2NEON_DEC(x) SSE2NEON_PRIMITIVE_CAT(SSE2NEON_DEC_, x)
++#define SSE2NEON_DEC_1 0
++#define SSE2NEON_DEC_2 1
++#define SSE2NEON_DEC_3 2
++#define SSE2NEON_DEC_4 3
++#define SSE2NEON_DEC_5 4
++#define SSE2NEON_DEC_6 5
++#define SSE2NEON_DEC_7 6
++#define SSE2NEON_DEC_8 7
++#define SSE2NEON_DEC_9 8
++#define SSE2NEON_DEC_10 9
++#define SSE2NEON_DEC_11 10
++#define SSE2NEON_DEC_12 11
++#define SSE2NEON_DEC_13 12
++#define SSE2NEON_DEC_14 13
++#define SSE2NEON_DEC_15 14
++#define SSE2NEON_DEC_16 15
++
++/* detection */
++#define SSE2NEON_CHECK_N(x, n, ...) n
++#define SSE2NEON_CHECK(...) SSE2NEON_CHECK_N(__VA_ARGS__, 0, )
++#define SSE2NEON_PROBE(x) x, 1,
++
++#define SSE2NEON_NOT(x) SSE2NEON_CHECK(SSE2NEON_PRIMITIVE_CAT(SSE2NEON_NOT_, x))
++#define SSE2NEON_NOT_0 SSE2NEON_PROBE(~)
++
++#define SSE2NEON_BOOL(x) SSE2NEON_COMPL(SSE2NEON_NOT(x))
++#define SSE2NEON_IF(c) SSE2NEON_IIF(SSE2NEON_BOOL(c))
++
++#define SSE2NEON_EAT(...)
++#define SSE2NEON_EXPAND(...) __VA_ARGS__
++#define SSE2NEON_WHEN(c) SSE2NEON_IF(c)(SSE2NEON_EXPAND, SSE2NEON_EAT)
++
++/* recursion */
++/* deferred expression */
++#define SSE2NEON_EMPTY()
++#define SSE2NEON_DEFER(id) id SSE2NEON_EMPTY()
++#define SSE2NEON_OBSTRUCT(...) __VA_ARGS__ SSE2NEON_DEFER(SSE2NEON_EMPTY)()
++#define SSE2NEON_EXPAND(...) __VA_ARGS__
++
++#define SSE2NEON_EVAL(...) \
++    SSE2NEON_EVAL1(SSE2NEON_EVAL1(SSE2NEON_EVAL1(__VA_ARGS__)))
++#define SSE2NEON_EVAL1(...) \
++    SSE2NEON_EVAL2(SSE2NEON_EVAL2(SSE2NEON_EVAL2(__VA_ARGS__)))
++#define SSE2NEON_EVAL2(...) \
++    SSE2NEON_EVAL3(SSE2NEON_EVAL3(SSE2NEON_EVAL3(__VA_ARGS__)))
++#define SSE2NEON_EVAL3(...) __VA_ARGS__
++
++#define SSE2NEON_REPEAT(count, macro, ...)                         \
++    SSE2NEON_WHEN(count)                                           \
++    (SSE2NEON_OBSTRUCT(SSE2NEON_REPEAT_INDIRECT)()(                \
++        SSE2NEON_DEC(count), macro,                                \
++        __VA_ARGS__) SSE2NEON_OBSTRUCT(macro)(SSE2NEON_DEC(count), \
++                                              __VA_ARGS__))
++#define SSE2NEON_REPEAT_INDIRECT() SSE2NEON_REPEAT
++
++#define SSE2NEON_SIZE_OF_byte 8
++#define SSE2NEON_NUMBER_OF_LANES_byte 16
++#define SSE2NEON_SIZE_OF_word 16
++#define SSE2NEON_NUMBER_OF_LANES_word 8
++
++#define SSE2NEON_COMPARE_EQUAL_THEN_FILL_LANE(i, type)                         \
++    mtx[i] = vreinterpretq_m128i_##type(vceqq_##type(                          \
++        vdupq_n_##type(vgetq_lane_##type(vreinterpretq_##type##_m128i(b), i)), \
++        vreinterpretq_##type##_m128i(a)));
++
++#define SSE2NEON_FILL_LANE(i, type) \
++    vec_b[i] =                      \
++        vdupq_n_##type(vgetq_lane_##type(vreinterpretq_##type##_m128i(b), i));
++
++#define PCMPSTR_RANGES(a, b, mtx, data_type_prefix, type_prefix, size,        \
++                       number_of_lanes, byte_or_word)                         \
++    do {                                                                      \
++        SSE2NEON_CAT(                                                         \
++            data_type_prefix,                                                 \
++            SSE2NEON_CAT(size,                                                \
++                         SSE2NEON_CAT(x, SSE2NEON_CAT(number_of_lanes, _t)))) \
++        vec_b[number_of_lanes];                                               \
++        __m128i mask = SSE2NEON_IIF(byte_or_word)(                            \
++            vreinterpretq_m128i_u16(vdupq_n_u16(0xff)),                       \
++            vreinterpretq_m128i_u32(vdupq_n_u32(0xffff)));                    \
++        SSE2NEON_EVAL(SSE2NEON_REPEAT(number_of_lanes, SSE2NEON_FILL_LANE,    \
++                                      SSE2NEON_CAT(type_prefix, size)))       \
++        for (int i = 0; i < number_of_lanes; i++) {                           \
++            mtx[i] = SSE2NEON_CAT(vreinterpretq_m128i_u,                      \
++                                  size)(SSE2NEON_CAT(vbslq_u, size)(          \
++                SSE2NEON_CAT(vreinterpretq_u,                                 \
++                             SSE2NEON_CAT(size, _m128i))(mask),               \
++                SSE2NEON_CAT(vcgeq_, SSE2NEON_CAT(type_prefix, size))(        \
++                    vec_b[i],                                                 \
++                    SSE2NEON_CAT(                                             \
++                        vreinterpretq_,                                       \
++                        SSE2NEON_CAT(type_prefix,                             \
++                                     SSE2NEON_CAT(size, _m128i(a))))),        \
++                SSE2NEON_CAT(vcleq_, SSE2NEON_CAT(type_prefix, size))(        \
++                    vec_b[i],                                                 \
++                    SSE2NEON_CAT(                                             \
++                        vreinterpretq_,                                       \
++                        SSE2NEON_CAT(type_prefix,                             \
++                                     SSE2NEON_CAT(size, _m128i(a)))))));      \
++        }                                                                     \
++    } while (0)
++
++#define PCMPSTR_EQ(a, b, mtx, size, number_of_lanes)                         \
++    do {                                                                     \
++        SSE2NEON_EVAL(SSE2NEON_REPEAT(number_of_lanes,                       \
++                                      SSE2NEON_COMPARE_EQUAL_THEN_FILL_LANE, \
++                                      SSE2NEON_CAT(u, size)))                \
++    } while (0)
++
++#define SSE2NEON_CMP_EQUAL_ANY_IMPL(type)                                     \
++    static int _sse2neon_cmp_##type##_equal_any(__m128i a, int la, __m128i b, \
++                                                int lb)                       \
++    {                                                                         \
++        __m128i mtx[16];                                                      \
++        PCMPSTR_EQ(a, b, mtx, SSE2NEON_CAT(SSE2NEON_SIZE_OF_, type),          \
++                   SSE2NEON_CAT(SSE2NEON_NUMBER_OF_LANES_, type));            \
++        return SSE2NEON_CAT(                                                  \
++            _sse2neon_aggregate_equal_any_,                                   \
++            SSE2NEON_CAT(                                                     \
++                SSE2NEON_CAT(SSE2NEON_SIZE_OF_, type),                        \
++                SSE2NEON_CAT(x, SSE2NEON_CAT(SSE2NEON_NUMBER_OF_LANES_,       \
++                                             type))))(la, lb, mtx);           \
++    }
++
++#define SSE2NEON_CMP_RANGES_IMPL(type, data_type, us, byte_or_word)            \
++    static int _sse2neon_cmp_##us##type##_ranges(__m128i a, int la, __m128i b, \
++                                                 int lb)                       \
++    {                                                                          \
++        __m128i mtx[16];                                                       \
++        PCMPSTR_RANGES(                                                        \
++            a, b, mtx, data_type, us, SSE2NEON_CAT(SSE2NEON_SIZE_OF_, type),   \
++            SSE2NEON_CAT(SSE2NEON_NUMBER_OF_LANES_, type), byte_or_word);      \
++        return SSE2NEON_CAT(                                                   \
++            _sse2neon_aggregate_ranges_,                                       \
++            SSE2NEON_CAT(                                                      \
++                SSE2NEON_CAT(SSE2NEON_SIZE_OF_, type),                         \
++                SSE2NEON_CAT(x, SSE2NEON_CAT(SSE2NEON_NUMBER_OF_LANES_,        \
++                                             type))))(la, lb, mtx);            \
++    }
++
++#define SSE2NEON_CMP_EQUAL_ORDERED_IMPL(type)                                  \
++    static int _sse2neon_cmp_##type##_equal_ordered(__m128i a, int la,         \
++                                                    __m128i b, int lb)         \
++    {                                                                          \
++        __m128i mtx[16];                                                       \
++        PCMPSTR_EQ(a, b, mtx, SSE2NEON_CAT(SSE2NEON_SIZE_OF_, type),           \
++                   SSE2NEON_CAT(SSE2NEON_NUMBER_OF_LANES_, type));             \
++        return SSE2NEON_CAT(                                                   \
++            _sse2neon_aggregate_equal_ordered_,                                \
++            SSE2NEON_CAT(                                                      \
++                SSE2NEON_CAT(SSE2NEON_SIZE_OF_, type),                         \
++                SSE2NEON_CAT(x,                                                \
++                             SSE2NEON_CAT(SSE2NEON_NUMBER_OF_LANES_, type))))( \
++            SSE2NEON_CAT(SSE2NEON_NUMBER_OF_LANES_, type), la, lb, mtx);       \
++    }
++
++static int _sse2neon_aggregate_equal_any_8x16(int la, int lb, __m128i mtx[16])
++{
++    int res = 0;
++    int m = (1 << la) - 1;
++    uint8x8_t vec_mask = vld1_u8(_sse2neon_cmpestr_mask8b);
++    uint8x8_t t_lo = vtst_u8(vdup_n_u8(m & 0xff), vec_mask);
++    uint8x8_t t_hi = vtst_u8(vdup_n_u8(m >> 8), vec_mask);
++    uint8x16_t vec = vcombine_u8(t_lo, t_hi);
++    for (int j = 0; j < lb; j++) {
++        mtx[j] = vreinterpretq_m128i_u8(
++            vandq_u8(vec, vreinterpretq_u8_m128i(mtx[j])));
++        mtx[j] = vreinterpretq_m128i_u8(
++            vshrq_n_u8(vreinterpretq_u8_m128i(mtx[j]), 7));
++        int tmp = _sse2neon_vaddvq_u8(vreinterpretq_u8_m128i(mtx[j])) ? 1 : 0;
++        res |= (tmp << j);
++    }
++    return res;
++}
++
++static int _sse2neon_aggregate_equal_any_16x8(int la, int lb, __m128i mtx[16])
++{
++    int res = 0;
++    int m = (1 << la) - 1;
++    uint16x8_t vec =
++        vtstq_u16(vdupq_n_u16(m), vld1q_u16(_sse2neon_cmpestr_mask16b));
++    for (int j = 0; j < lb; j++) {
++        mtx[j] = vreinterpretq_m128i_u16(
++            vandq_u16(vec, vreinterpretq_u16_m128i(mtx[j])));
++        mtx[j] = vreinterpretq_m128i_u16(
++            vshrq_n_u16(vreinterpretq_u16_m128i(mtx[j]), 15));
++        int tmp = _sse2neon_vaddvq_u16(vreinterpretq_u16_m128i(mtx[j])) ? 1 : 0;
++        res |= (tmp << j);
++    }
++    return res;
++}
++
++/* clang-format off */
++#define SSE2NEON_GENERATE_CMP_EQUAL_ANY(prefix) \
++    prefix##IMPL(byte) \
++    prefix##IMPL(word)
++/* clang-format on */
++
++SSE2NEON_GENERATE_CMP_EQUAL_ANY(SSE2NEON_CMP_EQUAL_ANY_)
++
++static int _sse2neon_aggregate_ranges_16x8(int la, int lb, __m128i mtx[16])
++{
++    int res = 0;
++    int m = (1 << la) - 1;
++    uint16x8_t vec =
++        vtstq_u16(vdupq_n_u16(m), vld1q_u16(_sse2neon_cmpestr_mask16b));
++    for (int j = 0; j < lb; j++) {
++        mtx[j] = vreinterpretq_m128i_u16(
++            vandq_u16(vec, vreinterpretq_u16_m128i(mtx[j])));
++        mtx[j] = vreinterpretq_m128i_u16(
++            vshrq_n_u16(vreinterpretq_u16_m128i(mtx[j]), 15));
++        __m128i tmp = vreinterpretq_m128i_u32(
++            vshrq_n_u32(vreinterpretq_u32_m128i(mtx[j]), 16));
++        uint32x4_t vec_res = vandq_u32(vreinterpretq_u32_m128i(mtx[j]),
++                                       vreinterpretq_u32_m128i(tmp));
++#if defined(__aarch64__) || defined(_M_ARM64)
++        int t = vaddvq_u32(vec_res) ? 1 : 0;
++#else
++        uint64x2_t sumh = vpaddlq_u32(vec_res);
++        int t = vgetq_lane_u64(sumh, 0) + vgetq_lane_u64(sumh, 1);
++#endif
++        res |= (t << j);
++    }
++    return res;
++}
++
++static int _sse2neon_aggregate_ranges_8x16(int la, int lb, __m128i mtx[16])
++{
++    int res = 0;
++    int m = (1 << la) - 1;
++    uint8x8_t vec_mask = vld1_u8(_sse2neon_cmpestr_mask8b);
++    uint8x8_t t_lo = vtst_u8(vdup_n_u8(m & 0xff), vec_mask);
++    uint8x8_t t_hi = vtst_u8(vdup_n_u8(m >> 8), vec_mask);
++    uint8x16_t vec = vcombine_u8(t_lo, t_hi);
++    for (int j = 0; j < lb; j++) {
++        mtx[j] = vreinterpretq_m128i_u8(
++            vandq_u8(vec, vreinterpretq_u8_m128i(mtx[j])));
++        mtx[j] = vreinterpretq_m128i_u8(
++            vshrq_n_u8(vreinterpretq_u8_m128i(mtx[j]), 7));
++        __m128i tmp = vreinterpretq_m128i_u16(
++            vshrq_n_u16(vreinterpretq_u16_m128i(mtx[j]), 8));
++        uint16x8_t vec_res = vandq_u16(vreinterpretq_u16_m128i(mtx[j]),
++                                       vreinterpretq_u16_m128i(tmp));
++        int t = _sse2neon_vaddvq_u16(vec_res) ? 1 : 0;
++        res |= (t << j);
++    }
++    return res;
++}
++
++#define SSE2NEON_CMP_RANGES_IS_BYTE 1
++#define SSE2NEON_CMP_RANGES_IS_WORD 0
++
++/* clang-format off */
++#define SSE2NEON_GENERATE_CMP_RANGES(prefix)             \
++    prefix##IMPL(byte, uint, u, prefix##IS_BYTE)         \
++    prefix##IMPL(byte, int, s, prefix##IS_BYTE)          \
++    prefix##IMPL(word, uint, u, prefix##IS_WORD)         \
++    prefix##IMPL(word, int, s, prefix##IS_WORD)
++/* clang-format on */
++
++SSE2NEON_GENERATE_CMP_RANGES(SSE2NEON_CMP_RANGES_)
++
++#undef SSE2NEON_CMP_RANGES_IS_BYTE
++#undef SSE2NEON_CMP_RANGES_IS_WORD
++
++static int _sse2neon_cmp_byte_equal_each(__m128i a, int la, __m128i b, int lb)
++{
++    uint8x16_t mtx =
++        vceqq_u8(vreinterpretq_u8_m128i(a), vreinterpretq_u8_m128i(b));
++    int m0 = (la < lb) ? 0 : ((1 << la) - (1 << lb));
++    int m1 = 0x10000 - (1 << la);
++    int tb = 0x10000 - (1 << lb);
++    uint8x8_t vec_mask, vec0_lo, vec0_hi, vec1_lo, vec1_hi;
++    uint8x8_t tmp_lo, tmp_hi, res_lo, res_hi;
++    vec_mask = vld1_u8(_sse2neon_cmpestr_mask8b);
++    vec0_lo = vtst_u8(vdup_n_u8(m0), vec_mask);
++    vec0_hi = vtst_u8(vdup_n_u8(m0 >> 8), vec_mask);
++    vec1_lo = vtst_u8(vdup_n_u8(m1), vec_mask);
++    vec1_hi = vtst_u8(vdup_n_u8(m1 >> 8), vec_mask);
++    tmp_lo = vtst_u8(vdup_n_u8(tb), vec_mask);
++    tmp_hi = vtst_u8(vdup_n_u8(tb >> 8), vec_mask);
++
++    res_lo = vbsl_u8(vec0_lo, vdup_n_u8(0), vget_low_u8(mtx));
++    res_hi = vbsl_u8(vec0_hi, vdup_n_u8(0), vget_high_u8(mtx));
++    res_lo = vbsl_u8(vec1_lo, tmp_lo, res_lo);
++    res_hi = vbsl_u8(vec1_hi, tmp_hi, res_hi);
++    res_lo = vand_u8(res_lo, vec_mask);
++    res_hi = vand_u8(res_hi, vec_mask);
++
++    int res = _sse2neon_vaddv_u8(res_lo) + (_sse2neon_vaddv_u8(res_hi) << 8);
++    return res;
++}
++
++static int _sse2neon_cmp_word_equal_each(__m128i a, int la, __m128i b, int lb)
++{
++    uint16x8_t mtx =
++        vceqq_u16(vreinterpretq_u16_m128i(a), vreinterpretq_u16_m128i(b));
++    int m0 = (la < lb) ? 0 : ((1 << la) - (1 << lb));
++    int m1 = 0x100 - (1 << la);
++    int tb = 0x100 - (1 << lb);
++    uint16x8_t vec_mask = vld1q_u16(_sse2neon_cmpestr_mask16b);
++    uint16x8_t vec0 = vtstq_u16(vdupq_n_u16(m0), vec_mask);
++    uint16x8_t vec1 = vtstq_u16(vdupq_n_u16(m1), vec_mask);
++    uint16x8_t tmp = vtstq_u16(vdupq_n_u16(tb), vec_mask);
++    mtx = vbslq_u16(vec0, vdupq_n_u16(0), mtx);
++    mtx = vbslq_u16(vec1, tmp, mtx);
++    mtx = vandq_u16(mtx, vec_mask);
++    return _sse2neon_vaddvq_u16(mtx);
++}
++
++#define SSE2NEON_AGGREGATE_EQUAL_ORDER_IS_UBYTE 1
++#define SSE2NEON_AGGREGATE_EQUAL_ORDER_IS_UWORD 0
++
++#define SSE2NEON_AGGREGATE_EQUAL_ORDER_IMPL(size, number_of_lanes, data_type)  \
++    static int _sse2neon_aggregate_equal_ordered_##size##x##number_of_lanes(   \
++        int bound, int la, int lb, __m128i mtx[16])                            \
++    {                                                                          \
++        int res = 0;                                                           \
++        int m1 = SSE2NEON_IIF(data_type)(0x10000, 0x100) - (1 << la);          \
++        uint##size##x8_t vec_mask = SSE2NEON_IIF(data_type)(                   \
++            vld1_u##size(_sse2neon_cmpestr_mask##size##b),                     \
++            vld1q_u##size(_sse2neon_cmpestr_mask##size##b));                   \
++        uint##size##x##number_of_lanes##_t vec1 = SSE2NEON_IIF(data_type)(     \
++            vcombine_u##size(vtst_u##size(vdup_n_u##size(m1), vec_mask),       \
++                             vtst_u##size(vdup_n_u##size(m1 >> 8), vec_mask)), \
++            vtstq_u##size(vdupq_n_u##size(m1), vec_mask));                     \
++        uint##size##x##number_of_lanes##_t vec_minusone = vdupq_n_u##size(-1); \
++        uint##size##x##number_of_lanes##_t vec_zero = vdupq_n_u##size(0);      \
++        for (int j = 0; j < lb; j++) {                                         \
++            mtx[j] = vreinterpretq_m128i_u##size(vbslq_u##size(                \
++                vec1, vec_minusone, vreinterpretq_u##size##_m128i(mtx[j])));   \
++        }                                                                      \
++        for (int j = lb; j < bound; j++) {                                     \
++            mtx[j] = vreinterpretq_m128i_u##size(                              \
++                vbslq_u##size(vec1, vec_minusone, vec_zero));                  \
++        }                                                                      \
++        unsigned SSE2NEON_IIF(data_type)(char, short) *ptr =                   \
++            (unsigned SSE2NEON_IIF(data_type)(char, short) *) mtx;             \
++        for (int i = 0; i < bound; i++) {                                      \
++            int val = 1;                                                       \
++            for (int j = 0, k = i; j < bound - i && k < bound; j++, k++)       \
++                val &= ptr[k * bound + j];                                     \
++            res += val << i;                                                   \
++        }                                                                      \
++        return res;                                                            \
++    }
++
++/* clang-format off */
++#define SSE2NEON_GENERATE_AGGREGATE_EQUAL_ORDER(prefix) \
++    prefix##IMPL(8, 16, prefix##IS_UBYTE)               \
++    prefix##IMPL(16, 8, prefix##IS_UWORD)
++/* clang-format on */
++
++SSE2NEON_GENERATE_AGGREGATE_EQUAL_ORDER(SSE2NEON_AGGREGATE_EQUAL_ORDER_)
++
++#undef SSE2NEON_AGGREGATE_EQUAL_ORDER_IS_UBYTE
++#undef SSE2NEON_AGGREGATE_EQUAL_ORDER_IS_UWORD
++
++/* clang-format off */
++#define SSE2NEON_GENERATE_CMP_EQUAL_ORDERED(prefix) \
++    prefix##IMPL(byte)                              \
++    prefix##IMPL(word)
++/* clang-format on */
++
++SSE2NEON_GENERATE_CMP_EQUAL_ORDERED(SSE2NEON_CMP_EQUAL_ORDERED_)
++
++#define SSE2NEON_CMPESTR_LIST                          \
++    _(CMP_UBYTE_EQUAL_ANY, cmp_byte_equal_any)         \
++    _(CMP_UWORD_EQUAL_ANY, cmp_word_equal_any)         \
++    _(CMP_SBYTE_EQUAL_ANY, cmp_byte_equal_any)         \
++    _(CMP_SWORD_EQUAL_ANY, cmp_word_equal_any)         \
++    _(CMP_UBYTE_RANGES, cmp_ubyte_ranges)              \
++    _(CMP_UWORD_RANGES, cmp_uword_ranges)              \
++    _(CMP_SBYTE_RANGES, cmp_sbyte_ranges)              \
++    _(CMP_SWORD_RANGES, cmp_sword_ranges)              \
++    _(CMP_UBYTE_EQUAL_EACH, cmp_byte_equal_each)       \
++    _(CMP_UWORD_EQUAL_EACH, cmp_word_equal_each)       \
++    _(CMP_SBYTE_EQUAL_EACH, cmp_byte_equal_each)       \
++    _(CMP_SWORD_EQUAL_EACH, cmp_word_equal_each)       \
++    _(CMP_UBYTE_EQUAL_ORDERED, cmp_byte_equal_ordered) \
++    _(CMP_UWORD_EQUAL_ORDERED, cmp_word_equal_ordered) \
++    _(CMP_SBYTE_EQUAL_ORDERED, cmp_byte_equal_ordered) \
++    _(CMP_SWORD_EQUAL_ORDERED, cmp_word_equal_ordered)
++
++enum {
++#define _(name, func_suffix) name,
++    SSE2NEON_CMPESTR_LIST
++#undef _
++};
++typedef int (*cmpestr_func_t)(__m128i a, int la, __m128i b, int lb);
++static cmpestr_func_t _sse2neon_cmpfunc_table[] = {
++#define _(name, func_suffix) _sse2neon_##func_suffix,
++    SSE2NEON_CMPESTR_LIST
++#undef _
++};
++
++FORCE_INLINE int _sse2neon_sido_negative(int res, int lb, int imm8, int bound)
++{
++    switch (imm8 & 0x30) {
++    case _SIDD_NEGATIVE_POLARITY:
++        res ^= 0xffffffff;
++        break;
++    case _SIDD_MASKED_NEGATIVE_POLARITY:
++        res ^= (1 << lb) - 1;
++        break;
++    default:
++        break;
++    }
++
++    return res & ((bound == 8) ? 0xFF : 0xFFFF);
++}
++
++FORCE_INLINE int _sse2neon_clz(unsigned int x)
++{
++#ifdef _MSC_VER
++    unsigned long cnt = 0;
++    if (_BitScanReverse(&cnt, x))
++        return 31 - cnt;
++    return 32;
++#else
++    return x != 0 ? __builtin_clz(x) : 32;
++#endif
++}
++
++FORCE_INLINE int _sse2neon_ctz(unsigned int x)
++{
++#ifdef _MSC_VER
++    unsigned long cnt = 0;
++    if (_BitScanForward(&cnt, x))
++        return cnt;
++    return 32;
++#else
++    return x != 0 ? __builtin_ctz(x) : 32;
++#endif
++}
++
++FORCE_INLINE int _sse2neon_ctzll(unsigned long long x)
++{
++#ifdef _MSC_VER
++    unsigned long cnt;
++#if defined(SSE2NEON_HAS_BITSCAN64)
++    if (_BitScanForward64(&cnt, x))
++        return (int) (cnt);
++#else
++    if (_BitScanForward(&cnt, (unsigned long) (x)))
++        return (int) cnt;
++    if (_BitScanForward(&cnt, (unsigned long) (x >> 32)))
++        return (int) (cnt + 32);
++#endif /* SSE2NEON_HAS_BITSCAN64 */
++    return 64;
++#else /* assume GNU compatible compilers */
++    return x != 0 ? __builtin_ctzll(x) : 64;
++#endif
++}
++
++#define SSE2NEON_MIN(x, y) (x) < (y) ? (x) : (y)
++
++#define SSE2NEON_CMPSTR_SET_UPPER(var, imm) \
++    const int var = (imm & 0x01) ? 8 : 16
++
++#define SSE2NEON_CMPESTRX_LEN_PAIR(a, b, la, lb) \
++    int tmp1 = la ^ (la >> 31);                  \
++    la = tmp1 - (la >> 31);                      \
++    int tmp2 = lb ^ (lb >> 31);                  \
++    lb = tmp2 - (lb >> 31);                      \
++    la = SSE2NEON_MIN(la, bound);                \
++    lb = SSE2NEON_MIN(lb, bound)
++
++// Compare all pairs of character in string a and b,
++// then aggregate the result.
++// As the only difference of PCMPESTR* and PCMPISTR* is the way to calculate the
++// length of string, we use SSE2NEON_CMP{I,E}STRX_GET_LEN to get the length of
++// string a and b.
++#define SSE2NEON_COMP_AGG(a, b, la, lb, imm8, IE)                  \
++    SSE2NEON_CMPSTR_SET_UPPER(bound, imm8);                        \
++    SSE2NEON_##IE##_LEN_PAIR(a, b, la, lb);                        \
++    int r2 = (_sse2neon_cmpfunc_table[imm8 & 0x0f])(a, la, b, lb); \
++    r2 = _sse2neon_sido_negative(r2, lb, imm8, bound)
++
++#define SSE2NEON_CMPSTR_GENERATE_INDEX(r2, bound, imm8)          \
++    return (r2 == 0) ? bound                                     \
++                     : ((imm8 & 0x40) ? (31 - _sse2neon_clz(r2)) \
++                                      : _sse2neon_ctz(r2))
++
++#define SSE2NEON_CMPSTR_GENERATE_MASK(dst)                                     \
++    __m128i dst = vreinterpretq_m128i_u8(vdupq_n_u8(0));                       \
++    if (imm8 & 0x40) {                                                         \
++        if (bound == 8) {                                                      \
++            uint16x8_t tmp = vtstq_u16(vdupq_n_u16(r2),                        \
++                                       vld1q_u16(_sse2neon_cmpestr_mask16b));  \
++            dst = vreinterpretq_m128i_u16(vbslq_u16(                           \
++                tmp, vdupq_n_u16(-1), vreinterpretq_u16_m128i(dst)));          \
++        } else {                                                               \
++            uint8x16_t vec_r2 =                                                \
++                vcombine_u8(vdup_n_u8(r2), vdup_n_u8(r2 >> 8));                \
++            uint8x16_t tmp =                                                   \
++                vtstq_u8(vec_r2, vld1q_u8(_sse2neon_cmpestr_mask8b));          \
++            dst = vreinterpretq_m128i_u8(                                      \
++                vbslq_u8(tmp, vdupq_n_u8(-1), vreinterpretq_u8_m128i(dst)));   \
++        }                                                                      \
++    } else {                                                                   \
++        if (bound == 16) {                                                     \
++            dst = vreinterpretq_m128i_u16(                                     \
++                vsetq_lane_u16(r2 & 0xffff, vreinterpretq_u16_m128i(dst), 0)); \
++        } else {                                                               \
++            dst = vreinterpretq_m128i_u8(                                      \
++                vsetq_lane_u8(r2 & 0xff, vreinterpretq_u8_m128i(dst), 0));     \
++        }                                                                      \
++    }                                                                          \
++    return dst
++
++// Compare packed strings in a and b with lengths la and lb using the control
++// in imm8, and returns 1 if b did not contain a null character and the
++// resulting mask was zero, and 0 otherwise.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpestra
++FORCE_INLINE int _mm_cmpestra(__m128i a,
++                              int la,
++                              __m128i b,
++                              int lb,
++                              const int imm8)
++{
++    int lb_cpy = lb;
++    SSE2NEON_COMP_AGG(a, b, la, lb, imm8, CMPESTRX);
++    return !r2 & (lb_cpy > bound);
++}
++
++// Compare packed strings in a and b with lengths la and lb using the control in
++// imm8, and returns 1 if the resulting mask was non-zero, and 0 otherwise.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpestrc
++FORCE_INLINE int _mm_cmpestrc(__m128i a,
++                              int la,
++                              __m128i b,
++                              int lb,
++                              const int imm8)
++{
++    SSE2NEON_COMP_AGG(a, b, la, lb, imm8, CMPESTRX);
++    return r2 != 0;
++}
++
++// Compare packed strings in a and b with lengths la and lb using the control
++// in imm8, and store the generated index in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpestri
++FORCE_INLINE int _mm_cmpestri(__m128i a,
++                              int la,
++                              __m128i b,
++                              int lb,
++                              const int imm8)
++{
++    SSE2NEON_COMP_AGG(a, b, la, lb, imm8, CMPESTRX);
++    SSE2NEON_CMPSTR_GENERATE_INDEX(r2, bound, imm8);
++}
++
++// Compare packed strings in a and b with lengths la and lb using the control
++// in imm8, and store the generated mask in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpestrm
++FORCE_INLINE __m128i
++_mm_cmpestrm(__m128i a, int la, __m128i b, int lb, const int imm8)
++{
++    SSE2NEON_COMP_AGG(a, b, la, lb, imm8, CMPESTRX);
++    SSE2NEON_CMPSTR_GENERATE_MASK(dst);
++}
++
++// Compare packed strings in a and b with lengths la and lb using the control in
++// imm8, and returns bit 0 of the resulting bit mask.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpestro
++FORCE_INLINE int _mm_cmpestro(__m128i a,
++                              int la,
++                              __m128i b,
++                              int lb,
++                              const int imm8)
++{
++    SSE2NEON_COMP_AGG(a, b, la, lb, imm8, CMPESTRX);
++    return r2 & 1;
++}
++
++// Compare packed strings in a and b with lengths la and lb using the control in
++// imm8, and returns 1 if any character in a was null, and 0 otherwise.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpestrs
++FORCE_INLINE int _mm_cmpestrs(__m128i a,
++                              int la,
++                              __m128i b,
++                              int lb,
++                              const int imm8)
++{
++    (void) a;
++    (void) b;
++    (void) lb;
++    SSE2NEON_CMPSTR_SET_UPPER(bound, imm8);
++    return la <= (bound - 1);
++}
++
++// Compare packed strings in a and b with lengths la and lb using the control in
++// imm8, and returns 1 if any character in b was null, and 0 otherwise.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpestrz
++FORCE_INLINE int _mm_cmpestrz(__m128i a,
++                              int la,
++                              __m128i b,
++                              int lb,
++                              const int imm8)
++{
++    (void) a;
++    (void) b;
++    (void) la;
++    SSE2NEON_CMPSTR_SET_UPPER(bound, imm8);
++    return lb <= (bound - 1);
++}
++
++#define SSE2NEON_CMPISTRX_LENGTH(str, len, imm8)                         \
++    do {                                                                 \
++        if (imm8 & 0x01) {                                               \
++            uint16x8_t equal_mask_##str =                                \
++                vceqq_u16(vreinterpretq_u16_m128i(str), vdupq_n_u16(0)); \
++            uint8x8_t res_##str = vshrn_n_u16(equal_mask_##str, 4);      \
++            uint64_t matches_##str =                                     \
++                vget_lane_u64(vreinterpret_u64_u8(res_##str), 0);        \
++            len = _sse2neon_ctzll(matches_##str) >> 3;                   \
++        } else {                                                         \
++            uint16x8_t equal_mask_##str = vreinterpretq_u16_u8(          \
++                vceqq_u8(vreinterpretq_u8_m128i(str), vdupq_n_u8(0)));   \
++            uint8x8_t res_##str = vshrn_n_u16(equal_mask_##str, 4);      \
++            uint64_t matches_##str =                                     \
++                vget_lane_u64(vreinterpret_u64_u8(res_##str), 0);        \
++            len = _sse2neon_ctzll(matches_##str) >> 2;                   \
++        }                                                                \
++    } while (0)
++
++#define SSE2NEON_CMPISTRX_LEN_PAIR(a, b, la, lb) \
++    int la, lb;                                  \
++    do {                                         \
++        SSE2NEON_CMPISTRX_LENGTH(a, la, imm8);   \
++        SSE2NEON_CMPISTRX_LENGTH(b, lb, imm8);   \
++    } while (0)
++
++// Compare packed strings with implicit lengths in a and b using the control in
++// imm8, and returns 1 if b did not contain a null character and the resulting
++// mask was zero, and 0 otherwise.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpistra
++FORCE_INLINE int _mm_cmpistra(__m128i a, __m128i b, const int imm8)
++{
++    SSE2NEON_COMP_AGG(a, b, la, lb, imm8, CMPISTRX);
++    return !r2 & (lb >= bound);
++}
++
++// Compare packed strings with implicit lengths in a and b using the control in
++// imm8, and returns 1 if the resulting mask was non-zero, and 0 otherwise.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpistrc
++FORCE_INLINE int _mm_cmpistrc(__m128i a, __m128i b, const int imm8)
++{
++    SSE2NEON_COMP_AGG(a, b, la, lb, imm8, CMPISTRX);
++    return r2 != 0;
++}
++
++// Compare packed strings with implicit lengths in a and b using the control in
++// imm8, and store the generated index in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpistri
++FORCE_INLINE int _mm_cmpistri(__m128i a, __m128i b, const int imm8)
++{
++    SSE2NEON_COMP_AGG(a, b, la, lb, imm8, CMPISTRX);
++    SSE2NEON_CMPSTR_GENERATE_INDEX(r2, bound, imm8);
++}
++
++// Compare packed strings with implicit lengths in a and b using the control in
++// imm8, and store the generated mask in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpistrm
++FORCE_INLINE __m128i _mm_cmpistrm(__m128i a, __m128i b, const int imm8)
++{
++    SSE2NEON_COMP_AGG(a, b, la, lb, imm8, CMPISTRX);
++    SSE2NEON_CMPSTR_GENERATE_MASK(dst);
++}
++
++// Compare packed strings with implicit lengths in a and b using the control in
++// imm8, and returns bit 0 of the resulting bit mask.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpistro
++FORCE_INLINE int _mm_cmpistro(__m128i a, __m128i b, const int imm8)
++{
++    SSE2NEON_COMP_AGG(a, b, la, lb, imm8, CMPISTRX);
++    return r2 & 1;
++}
++
++// Compare packed strings with implicit lengths in a and b using the control in
++// imm8, and returns 1 if any character in a was null, and 0 otherwise.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpistrs
++FORCE_INLINE int _mm_cmpistrs(__m128i a, __m128i b, const int imm8)
++{
++    (void) b;
++    SSE2NEON_CMPSTR_SET_UPPER(bound, imm8);
++    int la;
++    SSE2NEON_CMPISTRX_LENGTH(a, la, imm8);
++    return la <= (bound - 1);
++}
++
++// Compare packed strings with implicit lengths in a and b using the control in
++// imm8, and returns 1 if any character in b was null, and 0 otherwise.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_cmpistrz
++FORCE_INLINE int _mm_cmpistrz(__m128i a, __m128i b, const int imm8)
++{
++    (void) a;
++    SSE2NEON_CMPSTR_SET_UPPER(bound, imm8);
++    int lb;
++    SSE2NEON_CMPISTRX_LENGTH(b, lb, imm8);
++    return lb <= (bound - 1);
++}
++
++// Compares the 2 signed 64-bit integers in a and the 2 signed 64-bit integers
++// in b for greater than.
++FORCE_INLINE __m128i _mm_cmpgt_epi64(__m128i a, __m128i b)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    return vreinterpretq_m128i_u64(
++        vcgtq_s64(vreinterpretq_s64_m128i(a), vreinterpretq_s64_m128i(b)));
++#else
++    return vreinterpretq_m128i_s64(vshrq_n_s64(
++        vqsubq_s64(vreinterpretq_s64_m128i(b), vreinterpretq_s64_m128i(a)),
++        63));
++#endif
++}
++
++// Starting with the initial value in crc, accumulates a CRC32 value for
++// unsigned 16-bit integer v, and stores the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_crc32_u16
++FORCE_INLINE uint32_t _mm_crc32_u16(uint32_t crc, uint16_t v)
++{
++#if defined(__aarch64__) && defined(__ARM_FEATURE_CRC32)
++    __asm__ __volatile__("crc32ch %w[c], %w[c], %w[v]\n\t"
++                         : [c] "+r"(crc)
++                         : [v] "r"(v));
++#elif ((__ARM_ARCH == 8) && defined(__ARM_FEATURE_CRC32)) || \
++    (defined(_M_ARM64) && !defined(__clang__))
++    crc = __crc32ch(crc, v);
++#else
++    crc = _mm_crc32_u8(crc, v & 0xff);
++    crc = _mm_crc32_u8(crc, (v >> 8) & 0xff);
++#endif
++    return crc;
++}
++
++// Starting with the initial value in crc, accumulates a CRC32 value for
++// unsigned 32-bit integer v, and stores the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_crc32_u32
++FORCE_INLINE uint32_t _mm_crc32_u32(uint32_t crc, uint32_t v)
++{
++#if defined(__aarch64__) && defined(__ARM_FEATURE_CRC32)
++    __asm__ __volatile__("crc32cw %w[c], %w[c], %w[v]\n\t"
++                         : [c] "+r"(crc)
++                         : [v] "r"(v));
++#elif ((__ARM_ARCH == 8) && defined(__ARM_FEATURE_CRC32)) || \
++    (defined(_M_ARM64) && !defined(__clang__))
++    crc = __crc32cw(crc, v);
++#else
++    crc = _mm_crc32_u16(crc, v & 0xffff);
++    crc = _mm_crc32_u16(crc, (v >> 16) & 0xffff);
++#endif
++    return crc;
++}
++
++// Starting with the initial value in crc, accumulates a CRC32 value for
++// unsigned 64-bit integer v, and stores the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_crc32_u64
++FORCE_INLINE uint64_t _mm_crc32_u64(uint64_t crc, uint64_t v)
++{
++#if defined(__aarch64__) && defined(__ARM_FEATURE_CRC32)
++    __asm__ __volatile__("crc32cx %w[c], %w[c], %x[v]\n\t"
++                         : [c] "+r"(crc)
++                         : [v] "r"(v));
++#elif (defined(_M_ARM64) && !defined(__clang__))
++    crc = __crc32cd((uint32_t) crc, v);
++#else
++    crc = _mm_crc32_u32((uint32_t) (crc), v & 0xffffffff);
++    crc = _mm_crc32_u32((uint32_t) (crc), (v >> 32) & 0xffffffff);
++#endif
++    return crc;
++}
++
++// Starting with the initial value in crc, accumulates a CRC32 value for
++// unsigned 8-bit integer v, and stores the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_crc32_u8
++FORCE_INLINE uint32_t _mm_crc32_u8(uint32_t crc, uint8_t v)
++{
++#if defined(__aarch64__) && defined(__ARM_FEATURE_CRC32)
++    __asm__ __volatile__("crc32cb %w[c], %w[c], %w[v]\n\t"
++                         : [c] "+r"(crc)
++                         : [v] "r"(v));
++#elif ((__ARM_ARCH == 8) && defined(__ARM_FEATURE_CRC32)) || \
++    (defined(_M_ARM64) && !defined(__clang__))
++    crc = __crc32cb(crc, v);
++#else
++    crc ^= v;
++#if defined(__ARM_FEATURE_CRYPTO)
++    // Adapted from: https://mary.rs/lab/crc32/
++    // Barrent reduction
++    uint64x2_t orig =
++        vcombine_u64(vcreate_u64((uint64_t) (crc) << 24), vcreate_u64(0x0));
++    uint64x2_t tmp = orig;
++
++    // Polynomial P(x) of CRC32C
++    uint64_t p = 0x105EC76F1;
++    // Barrett Reduction (in bit-reflected form) constant mu_{64} = \lfloor
++    // 2^{64} / P(x) \rfloor = 0x11f91caf6
++    uint64_t mu = 0x1dea713f1;
++
++    // Multiply by mu_{64}
++    tmp = _sse2neon_vmull_p64(vget_low_u64(tmp), vcreate_u64(mu));
++    // Divide by 2^{64} (mask away the unnecessary bits)
++    tmp =
++        vandq_u64(tmp, vcombine_u64(vcreate_u64(0xFFFFFFFF), vcreate_u64(0x0)));
++    // Multiply by P(x) (shifted left by 1 for alignment reasons)
++    tmp = _sse2neon_vmull_p64(vget_low_u64(tmp), vcreate_u64(p));
++    // Subtract original from result
++    tmp = veorq_u64(tmp, orig);
++
++    // Extract the 'lower' (in bit-reflected sense) 32 bits
++    crc = vgetq_lane_u32(vreinterpretq_u32_u64(tmp), 1);
++#else  // Fall back to the generic table lookup approach
++    // Adapted from: https://create.stephan-brumme.com/crc32/
++    // Apply half-byte comparision algorithm for the best ratio between
++    // performance and lookup table.
++
++    // The lookup table just needs to store every 16th entry
++    // of the standard look-up table.
++    static const uint32_t crc32_half_byte_tbl[] = {
++        0x00000000, 0x105ec76f, 0x20bd8ede, 0x30e349b1, 0x417b1dbc, 0x5125dad3,
++        0x61c69362, 0x7198540d, 0x82f63b78, 0x92a8fc17, 0xa24bb5a6, 0xb21572c9,
++        0xc38d26c4, 0xd3d3e1ab, 0xe330a81a, 0xf36e6f75,
++    };
++
++    crc = (crc >> 4) ^ crc32_half_byte_tbl[crc & 0x0F];
++    crc = (crc >> 4) ^ crc32_half_byte_tbl[crc & 0x0F];
++#endif
++#endif
++    return crc;
++}
++
++/* AES */
++
++#if !defined(__ARM_FEATURE_CRYPTO) && (!defined(_M_ARM64) || defined(__clang__))
++/* clang-format off */
++#define SSE2NEON_AES_SBOX(w)                                           \
++    {                                                                  \
++        w(0x63), w(0x7c), w(0x77), w(0x7b), w(0xf2), w(0x6b), w(0x6f), \
++        w(0xc5), w(0x30), w(0x01), w(0x67), w(0x2b), w(0xfe), w(0xd7), \
++        w(0xab), w(0x76), w(0xca), w(0x82), w(0xc9), w(0x7d), w(0xfa), \
++        w(0x59), w(0x47), w(0xf0), w(0xad), w(0xd4), w(0xa2), w(0xaf), \
++        w(0x9c), w(0xa4), w(0x72), w(0xc0), w(0xb7), w(0xfd), w(0x93), \
++        w(0x26), w(0x36), w(0x3f), w(0xf7), w(0xcc), w(0x34), w(0xa5), \
++        w(0xe5), w(0xf1), w(0x71), w(0xd8), w(0x31), w(0x15), w(0x04), \
++        w(0xc7), w(0x23), w(0xc3), w(0x18), w(0x96), w(0x05), w(0x9a), \
++        w(0x07), w(0x12), w(0x80), w(0xe2), w(0xeb), w(0x27), w(0xb2), \
++        w(0x75), w(0x09), w(0x83), w(0x2c), w(0x1a), w(0x1b), w(0x6e), \
++        w(0x5a), w(0xa0), w(0x52), w(0x3b), w(0xd6), w(0xb3), w(0x29), \
++        w(0xe3), w(0x2f), w(0x84), w(0x53), w(0xd1), w(0x00), w(0xed), \
++        w(0x20), w(0xfc), w(0xb1), w(0x5b), w(0x6a), w(0xcb), w(0xbe), \
++        w(0x39), w(0x4a), w(0x4c), w(0x58), w(0xcf), w(0xd0), w(0xef), \
++        w(0xaa), w(0xfb), w(0x43), w(0x4d), w(0x33), w(0x85), w(0x45), \
++        w(0xf9), w(0x02), w(0x7f), w(0x50), w(0x3c), w(0x9f), w(0xa8), \
++        w(0x51), w(0xa3), w(0x40), w(0x8f), w(0x92), w(0x9d), w(0x38), \
++        w(0xf5), w(0xbc), w(0xb6), w(0xda), w(0x21), w(0x10), w(0xff), \
++        w(0xf3), w(0xd2), w(0xcd), w(0x0c), w(0x13), w(0xec), w(0x5f), \
++        w(0x97), w(0x44), w(0x17), w(0xc4), w(0xa7), w(0x7e), w(0x3d), \
++        w(0x64), w(0x5d), w(0x19), w(0x73), w(0x60), w(0x81), w(0x4f), \
++        w(0xdc), w(0x22), w(0x2a), w(0x90), w(0x88), w(0x46), w(0xee), \
++        w(0xb8), w(0x14), w(0xde), w(0x5e), w(0x0b), w(0xdb), w(0xe0), \
++        w(0x32), w(0x3a), w(0x0a), w(0x49), w(0x06), w(0x24), w(0x5c), \
++        w(0xc2), w(0xd3), w(0xac), w(0x62), w(0x91), w(0x95), w(0xe4), \
++        w(0x79), w(0xe7), w(0xc8), w(0x37), w(0x6d), w(0x8d), w(0xd5), \
++        w(0x4e), w(0xa9), w(0x6c), w(0x56), w(0xf4), w(0xea), w(0x65), \
++        w(0x7a), w(0xae), w(0x08), w(0xba), w(0x78), w(0x25), w(0x2e), \
++        w(0x1c), w(0xa6), w(0xb4), w(0xc6), w(0xe8), w(0xdd), w(0x74), \
++        w(0x1f), w(0x4b), w(0xbd), w(0x8b), w(0x8a), w(0x70), w(0x3e), \
++        w(0xb5), w(0x66), w(0x48), w(0x03), w(0xf6), w(0x0e), w(0x61), \
++        w(0x35), w(0x57), w(0xb9), w(0x86), w(0xc1), w(0x1d), w(0x9e), \
++        w(0xe1), w(0xf8), w(0x98), w(0x11), w(0x69), w(0xd9), w(0x8e), \
++        w(0x94), w(0x9b), w(0x1e), w(0x87), w(0xe9), w(0xce), w(0x55), \
++        w(0x28), w(0xdf), w(0x8c), w(0xa1), w(0x89), w(0x0d), w(0xbf), \
++        w(0xe6), w(0x42), w(0x68), w(0x41), w(0x99), w(0x2d), w(0x0f), \
++        w(0xb0), w(0x54), w(0xbb), w(0x16)                             \
++    }
++#define SSE2NEON_AES_RSBOX(w)                                          \
++    {                                                                  \
++        w(0x52), w(0x09), w(0x6a), w(0xd5), w(0x30), w(0x36), w(0xa5), \
++        w(0x38), w(0xbf), w(0x40), w(0xa3), w(0x9e), w(0x81), w(0xf3), \
++        w(0xd7), w(0xfb), w(0x7c), w(0xe3), w(0x39), w(0x82), w(0x9b), \
++        w(0x2f), w(0xff), w(0x87), w(0x34), w(0x8e), w(0x43), w(0x44), \
++        w(0xc4), w(0xde), w(0xe9), w(0xcb), w(0x54), w(0x7b), w(0x94), \
++        w(0x32), w(0xa6), w(0xc2), w(0x23), w(0x3d), w(0xee), w(0x4c), \
++        w(0x95), w(0x0b), w(0x42), w(0xfa), w(0xc3), w(0x4e), w(0x08), \
++        w(0x2e), w(0xa1), w(0x66), w(0x28), w(0xd9), w(0x24), w(0xb2), \
++        w(0x76), w(0x5b), w(0xa2), w(0x49), w(0x6d), w(0x8b), w(0xd1), \
++        w(0x25), w(0x72), w(0xf8), w(0xf6), w(0x64), w(0x86), w(0x68), \
++        w(0x98), w(0x16), w(0xd4), w(0xa4), w(0x5c), w(0xcc), w(0x5d), \
++        w(0x65), w(0xb6), w(0x92), w(0x6c), w(0x70), w(0x48), w(0x50), \
++        w(0xfd), w(0xed), w(0xb9), w(0xda), w(0x5e), w(0x15), w(0x46), \
++        w(0x57), w(0xa7), w(0x8d), w(0x9d), w(0x84), w(0x90), w(0xd8), \
++        w(0xab), w(0x00), w(0x8c), w(0xbc), w(0xd3), w(0x0a), w(0xf7), \
++        w(0xe4), w(0x58), w(0x05), w(0xb8), w(0xb3), w(0x45), w(0x06), \
++        w(0xd0), w(0x2c), w(0x1e), w(0x8f), w(0xca), w(0x3f), w(0x0f), \
++        w(0x02), w(0xc1), w(0xaf), w(0xbd), w(0x03), w(0x01), w(0x13), \
++        w(0x8a), w(0x6b), w(0x3a), w(0x91), w(0x11), w(0x41), w(0x4f), \
++        w(0x67), w(0xdc), w(0xea), w(0x97), w(0xf2), w(0xcf), w(0xce), \
++        w(0xf0), w(0xb4), w(0xe6), w(0x73), w(0x96), w(0xac), w(0x74), \
++        w(0x22), w(0xe7), w(0xad), w(0x35), w(0x85), w(0xe2), w(0xf9), \
++        w(0x37), w(0xe8), w(0x1c), w(0x75), w(0xdf), w(0x6e), w(0x47), \
++        w(0xf1), w(0x1a), w(0x71), w(0x1d), w(0x29), w(0xc5), w(0x89), \
++        w(0x6f), w(0xb7), w(0x62), w(0x0e), w(0xaa), w(0x18), w(0xbe), \
++        w(0x1b), w(0xfc), w(0x56), w(0x3e), w(0x4b), w(0xc6), w(0xd2), \
++        w(0x79), w(0x20), w(0x9a), w(0xdb), w(0xc0), w(0xfe), w(0x78), \
++        w(0xcd), w(0x5a), w(0xf4), w(0x1f), w(0xdd), w(0xa8), w(0x33), \
++        w(0x88), w(0x07), w(0xc7), w(0x31), w(0xb1), w(0x12), w(0x10), \
++        w(0x59), w(0x27), w(0x80), w(0xec), w(0x5f), w(0x60), w(0x51), \
++        w(0x7f), w(0xa9), w(0x19), w(0xb5), w(0x4a), w(0x0d), w(0x2d), \
++        w(0xe5), w(0x7a), w(0x9f), w(0x93), w(0xc9), w(0x9c), w(0xef), \
++        w(0xa0), w(0xe0), w(0x3b), w(0x4d), w(0xae), w(0x2a), w(0xf5), \
++        w(0xb0), w(0xc8), w(0xeb), w(0xbb), w(0x3c), w(0x83), w(0x53), \
++        w(0x99), w(0x61), w(0x17), w(0x2b), w(0x04), w(0x7e), w(0xba), \
++        w(0x77), w(0xd6), w(0x26), w(0xe1), w(0x69), w(0x14), w(0x63), \
++        w(0x55), w(0x21), w(0x0c), w(0x7d)                             \
++    }
++/* clang-format on */
++
++/* X Macro trick. See https://en.wikipedia.org/wiki/X_Macro */
++#define SSE2NEON_AES_H0(x) (x)
++static const uint8_t _sse2neon_sbox[256] = SSE2NEON_AES_SBOX(SSE2NEON_AES_H0);
++static const uint8_t _sse2neon_rsbox[256] = SSE2NEON_AES_RSBOX(SSE2NEON_AES_H0);
++#undef SSE2NEON_AES_H0
++
++/* x_time function and matrix multiply function */
++#if !defined(__aarch64__) && !defined(_M_ARM64)
++#define SSE2NEON_XT(x) (((x) << 1) ^ ((((x) >> 7) & 1) * 0x1b))
++#define SSE2NEON_MULTIPLY(x, y)                                  \
++    (((y & 1) * x) ^ ((y >> 1 & 1) * SSE2NEON_XT(x)) ^           \
++     ((y >> 2 & 1) * SSE2NEON_XT(SSE2NEON_XT(x))) ^              \
++     ((y >> 3 & 1) * SSE2NEON_XT(SSE2NEON_XT(SSE2NEON_XT(x)))) ^ \
++     ((y >> 4 & 1) * SSE2NEON_XT(SSE2NEON_XT(SSE2NEON_XT(SSE2NEON_XT(x))))))
++#endif
++
++// In the absence of crypto extensions, implement aesenc using regular NEON
++// intrinsics instead. See:
++// https://www.workofard.com/2017/01/accelerated-aes-for-the-arm64-linux-kernel/
++// https://www.workofard.com/2017/07/ghash-for-low-end-cores/ and
++// for more information.
++FORCE_INLINE __m128i _mm_aesenc_si128(__m128i a, __m128i RoundKey)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    static const uint8_t shift_rows[] = {
++        0x0, 0x5, 0xa, 0xf, 0x4, 0x9, 0xe, 0x3,
++        0x8, 0xd, 0x2, 0x7, 0xc, 0x1, 0x6, 0xb,
++    };
++    static const uint8_t ror32by8[] = {
++        0x1, 0x2, 0x3, 0x0, 0x5, 0x6, 0x7, 0x4,
++        0x9, 0xa, 0xb, 0x8, 0xd, 0xe, 0xf, 0xc,
++    };
++
++    uint8x16_t v;
++    uint8x16_t w = vreinterpretq_u8_m128i(a);
++
++    /* shift rows */
++    w = vqtbl1q_u8(w, vld1q_u8(shift_rows));
++
++    /* sub bytes */
++    // Here, we separate the whole 256-bytes table into 4 64-bytes tables, and
++    // look up each of the table. After each lookup, we load the next table
++    // which locates at the next 64-bytes. In the meantime, the index in the
++    // table would be smaller than it was, so the index parameters of
++    // `vqtbx4q_u8()` need to be added the same constant as the loaded tables.
++    v = vqtbl4q_u8(_sse2neon_vld1q_u8_x4(_sse2neon_sbox), w);
++    // 'w-0x40' equals to 'vsubq_u8(w, vdupq_n_u8(0x40))'
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_sbox + 0x40), w - 0x40);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_sbox + 0x80), w - 0x80);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_sbox + 0xc0), w - 0xc0);
++
++    /* mix columns */
++    w = (v << 1) ^ (uint8x16_t) (((int8x16_t) v >> 7) & 0x1b);
++    w ^= (uint8x16_t) vrev32q_u16((uint16x8_t) v);
++    w ^= vqtbl1q_u8(v ^ w, vld1q_u8(ror32by8));
++
++    /* add round key */
++    return vreinterpretq_m128i_u8(w) ^ RoundKey;
++
++#else /* ARMv7-A implementation for a table-based AES */
++#define SSE2NEON_AES_B2W(b0, b1, b2, b3)                 \
++    (((uint32_t) (b3) << 24) | ((uint32_t) (b2) << 16) | \
++     ((uint32_t) (b1) << 8) | (uint32_t) (b0))
++// muliplying 'x' by 2 in GF(2^8)
++#define SSE2NEON_AES_F2(x) ((x << 1) ^ (((x >> 7) & 1) * 0x011b /* WPOLY */))
++// muliplying 'x' by 3 in GF(2^8)
++#define SSE2NEON_AES_F3(x) (SSE2NEON_AES_F2(x) ^ x)
++#define SSE2NEON_AES_U0(p) \
++    SSE2NEON_AES_B2W(SSE2NEON_AES_F2(p), p, p, SSE2NEON_AES_F3(p))
++#define SSE2NEON_AES_U1(p) \
++    SSE2NEON_AES_B2W(SSE2NEON_AES_F3(p), SSE2NEON_AES_F2(p), p, p)
++#define SSE2NEON_AES_U2(p) \
++    SSE2NEON_AES_B2W(p, SSE2NEON_AES_F3(p), SSE2NEON_AES_F2(p), p)
++#define SSE2NEON_AES_U3(p) \
++    SSE2NEON_AES_B2W(p, p, SSE2NEON_AES_F3(p), SSE2NEON_AES_F2(p))
++
++    // this generates a table containing every possible permutation of
++    // shift_rows() and sub_bytes() with mix_columns().
++    static const uint32_t ALIGN_STRUCT(16) aes_table[4][256] = {
++        SSE2NEON_AES_SBOX(SSE2NEON_AES_U0),
++        SSE2NEON_AES_SBOX(SSE2NEON_AES_U1),
++        SSE2NEON_AES_SBOX(SSE2NEON_AES_U2),
++        SSE2NEON_AES_SBOX(SSE2NEON_AES_U3),
++    };
++#undef SSE2NEON_AES_B2W
++#undef SSE2NEON_AES_F2
++#undef SSE2NEON_AES_F3
++#undef SSE2NEON_AES_U0
++#undef SSE2NEON_AES_U1
++#undef SSE2NEON_AES_U2
++#undef SSE2NEON_AES_U3
++
++    uint32_t x0 = _mm_cvtsi128_si32(a);  // get a[31:0]
++    uint32_t x1 =
++        _mm_cvtsi128_si32(_mm_shuffle_epi32(a, 0x55));  // get a[63:32]
++    uint32_t x2 =
++        _mm_cvtsi128_si32(_mm_shuffle_epi32(a, 0xAA));  // get a[95:64]
++    uint32_t x3 =
++        _mm_cvtsi128_si32(_mm_shuffle_epi32(a, 0xFF));  // get a[127:96]
++
++    // finish the modulo addition step in mix_columns()
++    __m128i out = _mm_set_epi32(
++        (aes_table[0][x3 & 0xff] ^ aes_table[1][(x0 >> 8) & 0xff] ^
++         aes_table[2][(x1 >> 16) & 0xff] ^ aes_table[3][x2 >> 24]),
++        (aes_table[0][x2 & 0xff] ^ aes_table[1][(x3 >> 8) & 0xff] ^
++         aes_table[2][(x0 >> 16) & 0xff] ^ aes_table[3][x1 >> 24]),
++        (aes_table[0][x1 & 0xff] ^ aes_table[1][(x2 >> 8) & 0xff] ^
++         aes_table[2][(x3 >> 16) & 0xff] ^ aes_table[3][x0 >> 24]),
++        (aes_table[0][x0 & 0xff] ^ aes_table[1][(x1 >> 8) & 0xff] ^
++         aes_table[2][(x2 >> 16) & 0xff] ^ aes_table[3][x3 >> 24]));
++
++    return _mm_xor_si128(out, RoundKey);
++#endif
++}
++
++// Perform one round of an AES decryption flow on data (state) in a using the
++// round key in RoundKey, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_aesdec_si128
++FORCE_INLINE __m128i _mm_aesdec_si128(__m128i a, __m128i RoundKey)
++{
++#if defined(__aarch64__)
++    static const uint8_t inv_shift_rows[] = {
++        0x0, 0xd, 0xa, 0x7, 0x4, 0x1, 0xe, 0xb,
++        0x8, 0x5, 0x2, 0xf, 0xc, 0x9, 0x6, 0x3,
++    };
++    static const uint8_t ror32by8[] = {
++        0x1, 0x2, 0x3, 0x0, 0x5, 0x6, 0x7, 0x4,
++        0x9, 0xa, 0xb, 0x8, 0xd, 0xe, 0xf, 0xc,
++    };
++
++    uint8x16_t v;
++    uint8x16_t w = vreinterpretq_u8_m128i(a);
++
++    // inverse shift rows
++    w = vqtbl1q_u8(w, vld1q_u8(inv_shift_rows));
++
++    // inverse sub bytes
++    v = vqtbl4q_u8(_sse2neon_vld1q_u8_x4(_sse2neon_rsbox), w);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_rsbox + 0x40), w - 0x40);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_rsbox + 0x80), w - 0x80);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_rsbox + 0xc0), w - 0xc0);
++
++    // inverse mix columns
++    // multiplying 'v' by 4 in GF(2^8)
++    w = (v << 1) ^ (uint8x16_t) (((int8x16_t) v >> 7) & 0x1b);
++    w = (w << 1) ^ (uint8x16_t) (((int8x16_t) w >> 7) & 0x1b);
++    v ^= w;
++    v ^= (uint8x16_t) vrev32q_u16((uint16x8_t) w);
++
++    w = (v << 1) ^ (uint8x16_t) (((int8x16_t) v >> 7) &
++                                 0x1b);  // muliplying 'v' by 2 in GF(2^8)
++    w ^= (uint8x16_t) vrev32q_u16((uint16x8_t) v);
++    w ^= vqtbl1q_u8(v ^ w, vld1q_u8(ror32by8));
++
++    // add round key
++    return vreinterpretq_m128i_u8(w) ^ RoundKey;
++
++#else /* ARMv7-A NEON implementation */
++    /* FIXME: optimized for NEON */
++    uint8_t i, e, f, g, h, v[4][4];
++    uint8_t *_a = (uint8_t *) &a;
++    for (i = 0; i < 16; ++i) {
++        v[((i / 4) + (i % 4)) % 4][i % 4] = _sse2neon_rsbox[_a[i]];
++    }
++
++    // inverse mix columns
++    for (i = 0; i < 4; ++i) {
++        e = v[i][0];
++        f = v[i][1];
++        g = v[i][2];
++        h = v[i][3];
++
++        v[i][0] = SSE2NEON_MULTIPLY(e, 0x0e) ^ SSE2NEON_MULTIPLY(f, 0x0b) ^
++                  SSE2NEON_MULTIPLY(g, 0x0d) ^ SSE2NEON_MULTIPLY(h, 0x09);
++        v[i][1] = SSE2NEON_MULTIPLY(e, 0x09) ^ SSE2NEON_MULTIPLY(f, 0x0e) ^
++                  SSE2NEON_MULTIPLY(g, 0x0b) ^ SSE2NEON_MULTIPLY(h, 0x0d);
++        v[i][2] = SSE2NEON_MULTIPLY(e, 0x0d) ^ SSE2NEON_MULTIPLY(f, 0x09) ^
++                  SSE2NEON_MULTIPLY(g, 0x0e) ^ SSE2NEON_MULTIPLY(h, 0x0b);
++        v[i][3] = SSE2NEON_MULTIPLY(e, 0x0b) ^ SSE2NEON_MULTIPLY(f, 0x0d) ^
++                  SSE2NEON_MULTIPLY(g, 0x09) ^ SSE2NEON_MULTIPLY(h, 0x0e);
++    }
++
++    return vreinterpretq_m128i_u8(vld1q_u8((uint8_t *) v)) ^ RoundKey;
++#endif
++}
++
++// Perform the last round of an AES encryption flow on data (state) in a using
++// the round key in RoundKey, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_aesenclast_si128
++FORCE_INLINE __m128i _mm_aesenclast_si128(__m128i a, __m128i RoundKey)
++{
++#if defined(__aarch64__)
++    static const uint8_t shift_rows[] = {
++        0x0, 0x5, 0xa, 0xf, 0x4, 0x9, 0xe, 0x3,
++        0x8, 0xd, 0x2, 0x7, 0xc, 0x1, 0x6, 0xb,
++    };
++
++    uint8x16_t v;
++    uint8x16_t w = vreinterpretq_u8_m128i(a);
++
++    // shift rows
++    w = vqtbl1q_u8(w, vld1q_u8(shift_rows));
++
++    // sub bytes
++    v = vqtbl4q_u8(_sse2neon_vld1q_u8_x4(_sse2neon_sbox), w);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_sbox + 0x40), w - 0x40);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_sbox + 0x80), w - 0x80);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_sbox + 0xc0), w - 0xc0);
++
++    // add round key
++    return vreinterpretq_m128i_u8(v) ^ RoundKey;
++
++#else /* ARMv7-A implementation */
++    uint8_t v[16] = {
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 0)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 5)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 10)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 15)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 4)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 9)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 14)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 3)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 8)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 13)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 2)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 7)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 12)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 1)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 6)],
++        _sse2neon_sbox[vgetq_lane_u8(vreinterpretq_u8_m128i(a), 11)],
++    };
++
++    return vreinterpretq_m128i_u8(vld1q_u8(v)) ^ RoundKey;
++#endif
++}
++
++// Perform the last round of an AES decryption flow on data (state) in a using
++// the round key in RoundKey, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_aesdeclast_si128
++FORCE_INLINE __m128i _mm_aesdeclast_si128(__m128i a, __m128i RoundKey)
++{
++#if defined(__aarch64__)
++    static const uint8_t inv_shift_rows[] = {
++        0x0, 0xd, 0xa, 0x7, 0x4, 0x1, 0xe, 0xb,
++        0x8, 0x5, 0x2, 0xf, 0xc, 0x9, 0x6, 0x3,
++    };
++
++    uint8x16_t v;
++    uint8x16_t w = vreinterpretq_u8_m128i(a);
++
++    // inverse shift rows
++    w = vqtbl1q_u8(w, vld1q_u8(inv_shift_rows));
++
++    // inverse sub bytes
++    v = vqtbl4q_u8(_sse2neon_vld1q_u8_x4(_sse2neon_rsbox), w);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_rsbox + 0x40), w - 0x40);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_rsbox + 0x80), w - 0x80);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_rsbox + 0xc0), w - 0xc0);
++
++    // add round key
++    return vreinterpretq_m128i_u8(v) ^ RoundKey;
++
++#else /* ARMv7-A NEON implementation */
++    /* FIXME: optimized for NEON */
++    uint8_t v[4][4];
++    uint8_t *_a = (uint8_t *) &a;
++    for (int i = 0; i < 16; ++i) {
++        v[((i / 4) + (i % 4)) % 4][i % 4] = _sse2neon_rsbox[_a[i]];
++    }
++
++    return vreinterpretq_m128i_u8(vld1q_u8((uint8_t *) v)) ^ RoundKey;
++#endif
++}
++
++// Perform the InvMixColumns transformation on a and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_aesimc_si128
++FORCE_INLINE __m128i _mm_aesimc_si128(__m128i a)
++{
++#if defined(__aarch64__)
++    static const uint8_t ror32by8[] = {
++        0x1, 0x2, 0x3, 0x0, 0x5, 0x6, 0x7, 0x4,
++        0x9, 0xa, 0xb, 0x8, 0xd, 0xe, 0xf, 0xc,
++    };
++    uint8x16_t v = vreinterpretq_u8_m128i(a);
++    uint8x16_t w;
++
++    // multiplying 'v' by 4 in GF(2^8)
++    w = (v << 1) ^ (uint8x16_t) (((int8x16_t) v >> 7) & 0x1b);
++    w = (w << 1) ^ (uint8x16_t) (((int8x16_t) w >> 7) & 0x1b);
++    v ^= w;
++    v ^= (uint8x16_t) vrev32q_u16((uint16x8_t) w);
++
++    // multiplying 'v' by 2 in GF(2^8)
++    w = (v << 1) ^ (uint8x16_t) (((int8x16_t) v >> 7) & 0x1b);
++    w ^= (uint8x16_t) vrev32q_u16((uint16x8_t) v);
++    w ^= vqtbl1q_u8(v ^ w, vld1q_u8(ror32by8));
++    return vreinterpretq_m128i_u8(w);
++
++#else /* ARMv7-A NEON implementation */
++    uint8_t i, e, f, g, h, v[4][4];
++    vst1q_u8((uint8_t *) v, vreinterpretq_u8_m128i(a));
++    for (i = 0; i < 4; ++i) {
++        e = v[i][0];
++        f = v[i][1];
++        g = v[i][2];
++        h = v[i][3];
++
++        v[i][0] = SSE2NEON_MULTIPLY(e, 0x0e) ^ SSE2NEON_MULTIPLY(f, 0x0b) ^
++                  SSE2NEON_MULTIPLY(g, 0x0d) ^ SSE2NEON_MULTIPLY(h, 0x09);
++        v[i][1] = SSE2NEON_MULTIPLY(e, 0x09) ^ SSE2NEON_MULTIPLY(f, 0x0e) ^
++                  SSE2NEON_MULTIPLY(g, 0x0b) ^ SSE2NEON_MULTIPLY(h, 0x0d);
++        v[i][2] = SSE2NEON_MULTIPLY(e, 0x0d) ^ SSE2NEON_MULTIPLY(f, 0x09) ^
++                  SSE2NEON_MULTIPLY(g, 0x0e) ^ SSE2NEON_MULTIPLY(h, 0x0b);
++        v[i][3] = SSE2NEON_MULTIPLY(e, 0x0b) ^ SSE2NEON_MULTIPLY(f, 0x0d) ^
++                  SSE2NEON_MULTIPLY(g, 0x09) ^ SSE2NEON_MULTIPLY(h, 0x0e);
++    }
++
++    return vreinterpretq_m128i_u8(vld1q_u8((uint8_t *) v));
++#endif
++}
++
++// Assist in expanding the AES cipher key by computing steps towards generating
++// a round key for encryption cipher using data from a and an 8-bit round
++// constant specified in imm8, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_aeskeygenassist_si128
++//
++// Emits the Advanced Encryption Standard (AES) instruction aeskeygenassist.
++// This instruction generates a round key for AES encryption. See
++// https://kazakov.life/2017/11/01/cryptocurrency-mining-on-ios-devices/
++// for details.
++FORCE_INLINE __m128i _mm_aeskeygenassist_si128(__m128i a, const int rcon)
++{
++#if defined(__aarch64__)
++    uint8x16_t _a = vreinterpretq_u8_m128i(a);
++    uint8x16_t v = vqtbl4q_u8(_sse2neon_vld1q_u8_x4(_sse2neon_sbox), _a);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_sbox + 0x40), _a - 0x40);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_sbox + 0x80), _a - 0x80);
++    v = vqtbx4q_u8(v, _sse2neon_vld1q_u8_x4(_sse2neon_sbox + 0xc0), _a - 0xc0);
++
++    uint32x4_t v_u32 = vreinterpretq_u32_u8(v);
++    uint32x4_t ror_v = vorrq_u32(vshrq_n_u32(v_u32, 8), vshlq_n_u32(v_u32, 24));
++    uint32x4_t ror_xor_v = veorq_u32(ror_v, vdupq_n_u32(rcon));
++
++    return vreinterpretq_m128i_u32(vtrn2q_u32(v_u32, ror_xor_v));
++
++#else /* ARMv7-A NEON implementation */
++    uint32_t X1 = _mm_cvtsi128_si32(_mm_shuffle_epi32(a, 0x55));
++    uint32_t X3 = _mm_cvtsi128_si32(_mm_shuffle_epi32(a, 0xFF));
++    for (int i = 0; i < 4; ++i) {
++        ((uint8_t *) &X1)[i] = _sse2neon_sbox[((uint8_t *) &X1)[i]];
++        ((uint8_t *) &X3)[i] = _sse2neon_sbox[((uint8_t *) &X3)[i]];
++    }
++    return _mm_set_epi32(((X3 >> 8) | (X3 << 24)) ^ rcon, X3,
++                         ((X1 >> 8) | (X1 << 24)) ^ rcon, X1);
++#endif
++}
++#undef SSE2NEON_AES_SBOX
++#undef SSE2NEON_AES_RSBOX
++
++#if defined(__aarch64__)
++#undef SSE2NEON_XT
++#undef SSE2NEON_MULTIPLY
++#endif
++
++#else /* __ARM_FEATURE_CRYPTO */
++// Implements equivalent of 'aesenc' by combining AESE (with an empty key) and
++// AESMC and then manually applying the real key as an xor operation. This
++// unfortunately means an additional xor op; the compiler should be able to
++// optimize this away for repeated calls however. See
++// https://blog.michaelbrase.com/2018/05/08/emulating-x86-aes-intrinsics-on-armv8-a
++// for more details.
++FORCE_INLINE __m128i _mm_aesenc_si128(__m128i a, __m128i b)
++{
++    return vreinterpretq_m128i_u8(veorq_u8(
++        vaesmcq_u8(vaeseq_u8(vreinterpretq_u8_m128i(a), vdupq_n_u8(0))),
++        vreinterpretq_u8_m128i(b)));
++}
++
++// Perform one round of an AES decryption flow on data (state) in a using the
++// round key in RoundKey, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_aesdec_si128
++FORCE_INLINE __m128i _mm_aesdec_si128(__m128i a, __m128i RoundKey)
++{
++    return vreinterpretq_m128i_u8(veorq_u8(
++        vaesimcq_u8(vaesdq_u8(vreinterpretq_u8_m128i(a), vdupq_n_u8(0))),
++        vreinterpretq_u8_m128i(RoundKey)));
++}
++
++// Perform the last round of an AES encryption flow on data (state) in a using
++// the round key in RoundKey, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_aesenclast_si128
++FORCE_INLINE __m128i _mm_aesenclast_si128(__m128i a, __m128i RoundKey)
++{
++    return _mm_xor_si128(vreinterpretq_m128i_u8(vaeseq_u8(
++                             vreinterpretq_u8_m128i(a), vdupq_n_u8(0))),
++                         RoundKey);
++}
++
++// Perform the last round of an AES decryption flow on data (state) in a using
++// the round key in RoundKey, and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_aesdeclast_si128
++FORCE_INLINE __m128i _mm_aesdeclast_si128(__m128i a, __m128i RoundKey)
++{
++    return vreinterpretq_m128i_u8(
++        veorq_u8(vaesdq_u8(vreinterpretq_u8_m128i(a), vdupq_n_u8(0)),
++                 vreinterpretq_u8_m128i(RoundKey)));
++}
++
++// Perform the InvMixColumns transformation on a and store the result in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_aesimc_si128
++FORCE_INLINE __m128i _mm_aesimc_si128(__m128i a)
++{
++    return vreinterpretq_m128i_u8(vaesimcq_u8(vreinterpretq_u8_m128i(a)));
++}
++
++// Assist in expanding the AES cipher key by computing steps towards generating
++// a round key for encryption cipher using data from a and an 8-bit round
++// constant specified in imm8, and store the result in dst."
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_aeskeygenassist_si128
++FORCE_INLINE __m128i _mm_aeskeygenassist_si128(__m128i a, const int rcon)
++{
++    // AESE does ShiftRows and SubBytes on A
++    uint8x16_t u8 = vaeseq_u8(vreinterpretq_u8_m128i(a), vdupq_n_u8(0));
++
++#ifndef _MSC_VER
++    uint8x16_t dest = {
++        // Undo ShiftRows step from AESE and extract X1 and X3
++        u8[0x4], u8[0x1], u8[0xE], u8[0xB],  // SubBytes(X1)
++        u8[0x1], u8[0xE], u8[0xB], u8[0x4],  // ROT(SubBytes(X1))
++        u8[0xC], u8[0x9], u8[0x6], u8[0x3],  // SubBytes(X3)
++        u8[0x9], u8[0x6], u8[0x3], u8[0xC],  // ROT(SubBytes(X3))
++    };
++    uint32x4_t r = {0, (unsigned) rcon, 0, (unsigned) rcon};
++    return vreinterpretq_m128i_u8(dest) ^ vreinterpretq_m128i_u32(r);
++#else
++    // We have to do this hack because MSVC is strictly adhering to the CPP
++    // standard, in particular C++03 8.5.1 sub-section 15, which states that
++    // unions must be initialized by their first member type.
++
++    // As per the Windows ARM64 ABI, it is always little endian, so this works
++    __n128 dest{
++        ((uint64_t) u8.n128_u8[0x4] << 0) | ((uint64_t) u8.n128_u8[0x1] << 8) |
++            ((uint64_t) u8.n128_u8[0xE] << 16) |
++            ((uint64_t) u8.n128_u8[0xB] << 24) |
++            ((uint64_t) u8.n128_u8[0x1] << 32) |
++            ((uint64_t) u8.n128_u8[0xE] << 40) |
++            ((uint64_t) u8.n128_u8[0xB] << 48) |
++            ((uint64_t) u8.n128_u8[0x4] << 56),
++        ((uint64_t) u8.n128_u8[0xC] << 0) | ((uint64_t) u8.n128_u8[0x9] << 8) |
++            ((uint64_t) u8.n128_u8[0x6] << 16) |
++            ((uint64_t) u8.n128_u8[0x3] << 24) |
++            ((uint64_t) u8.n128_u8[0x9] << 32) |
++            ((uint64_t) u8.n128_u8[0x6] << 40) |
++            ((uint64_t) u8.n128_u8[0x3] << 48) |
++            ((uint64_t) u8.n128_u8[0xC] << 56)};
++
++    dest.n128_u32[1] = dest.n128_u32[1] ^ rcon;
++    dest.n128_u32[3] = dest.n128_u32[3] ^ rcon;
++
++    return dest;
++#endif
++}
++#endif
++
++/* Others */
++
++// Perform a carry-less multiplication of two 64-bit integers, selected from a
++// and b according to imm8, and store the results in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_clmulepi64_si128
++FORCE_INLINE __m128i _mm_clmulepi64_si128(__m128i _a, __m128i _b, const int imm)
++{
++    uint64x2_t a = vreinterpretq_u64_m128i(_a);
++    uint64x2_t b = vreinterpretq_u64_m128i(_b);
++    switch (imm & 0x11) {
++    case 0x00:
++        return vreinterpretq_m128i_u64(
++            _sse2neon_vmull_p64(vget_low_u64(a), vget_low_u64(b)));
++    case 0x01:
++        return vreinterpretq_m128i_u64(
++            _sse2neon_vmull_p64(vget_high_u64(a), vget_low_u64(b)));
++    case 0x10:
++        return vreinterpretq_m128i_u64(
++            _sse2neon_vmull_p64(vget_low_u64(a), vget_high_u64(b)));
++    case 0x11:
++        return vreinterpretq_m128i_u64(
++            _sse2neon_vmull_p64(vget_high_u64(a), vget_high_u64(b)));
++    default:
++        abort();
++    }
++}
++
++FORCE_INLINE unsigned int _sse2neon_mm_get_denormals_zero_mode(void)
++{
++    union {
++        fpcr_bitfield field;
++#if defined(__aarch64__) || defined(_M_ARM64)
++        uint64_t value;
++#else
++        uint32_t value;
++#endif
++    } r;
++
++#if defined(__aarch64__) || defined(_M_ARM64)
++    r.value = _sse2neon_get_fpcr();
++#else
++    __asm__ __volatile__("vmrs %0, FPSCR" : "=r"(r.value)); /* read */
++#endif
++
++    return r.field.bit24 ? _MM_DENORMALS_ZERO_ON : _MM_DENORMALS_ZERO_OFF;
++}
++
++// Count the number of bits set to 1 in unsigned 32-bit integer a, and
++// return that count in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_popcnt_u32
++FORCE_INLINE int _mm_popcnt_u32(unsigned int a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++#if __has_builtin(__builtin_popcount)
++    return __builtin_popcount(a);
++#elif defined(_MSC_VER)
++    return _CountOneBits(a);
++#else
++    return (int) vaddlv_u8(vcnt_u8(vcreate_u8((uint64_t) a)));
++#endif
++#else
++    uint32_t count = 0;
++    uint8x8_t input_val, count8x8_val;
++    uint16x4_t count16x4_val;
++    uint32x2_t count32x2_val;
++
++    input_val = vld1_u8((uint8_t *) &a);
++    count8x8_val = vcnt_u8(input_val);
++    count16x4_val = vpaddl_u8(count8x8_val);
++    count32x2_val = vpaddl_u16(count16x4_val);
++
++    vst1_u32(&count, count32x2_val);
++    return count;
++#endif
++}
++
++// Count the number of bits set to 1 in unsigned 64-bit integer a, and
++// return that count in dst.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=_mm_popcnt_u64
++FORCE_INLINE int64_t _mm_popcnt_u64(uint64_t a)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++#if __has_builtin(__builtin_popcountll)
++    return __builtin_popcountll(a);
++#elif defined(_MSC_VER)
++    return _CountOneBits64(a);
++#else
++    return (int64_t) vaddlv_u8(vcnt_u8(vcreate_u8(a)));
++#endif
++#else
++    uint64_t count = 0;
++    uint8x8_t input_val, count8x8_val;
++    uint16x4_t count16x4_val;
++    uint32x2_t count32x2_val;
++    uint64x1_t count64x1_val;
++
++    input_val = vld1_u8((uint8_t *) &a);
++    count8x8_val = vcnt_u8(input_val);
++    count16x4_val = vpaddl_u8(count8x8_val);
++    count32x2_val = vpaddl_u16(count16x4_val);
++    count64x1_val = vpaddl_u32(count32x2_val);
++    vst1_u64(&count, count64x1_val);
++    return count;
++#endif
++}
++
++FORCE_INLINE void _sse2neon_mm_set_denormals_zero_mode(unsigned int flag)
++{
++    // AArch32 Advanced SIMD arithmetic always uses the Flush-to-zero setting,
++    // regardless of the value of the FZ bit.
++    union {
++        fpcr_bitfield field;
++#if defined(__aarch64__) || defined(_M_ARM64)
++        uint64_t value;
++#else
++        uint32_t value;
++#endif
++    } r;
++
++#if defined(__aarch64__) || defined(_M_ARM64)
++    r.value = _sse2neon_get_fpcr();
++#else
++    __asm__ __volatile__("vmrs %0, FPSCR" : "=r"(r.value)); /* read */
++#endif
++
++    r.field.bit24 = (flag & _MM_DENORMALS_ZERO_MASK) == _MM_DENORMALS_ZERO_ON;
++
++#if defined(__aarch64__) || defined(_M_ARM64)
++    _sse2neon_set_fpcr(r.value);
++#else
++    __asm__ __volatile__("vmsr FPSCR, %0" ::"r"(r));        /* write */
++#endif
++}
++
++// Return the current 64-bit value of the processor's time-stamp counter.
++// https://www.intel.com/content/www/us/en/docs/intrinsics-guide/index.html#text=rdtsc
++FORCE_INLINE uint64_t _rdtsc(void)
++{
++#if defined(__aarch64__) || defined(_M_ARM64)
++    uint64_t val;
++
++    /* According to ARM DDI 0487F.c, from Armv8.0 to Armv8.5 inclusive, the
++     * system counter is at least 56 bits wide; from Armv8.6, the counter
++     * must be 64 bits wide.  So the system counter could be less than 64
++     * bits wide and it is attributed with the flag 'cap_user_time_short'
++     * is true.
++     */
++#if defined(_MSC_VER)
++    val = _ReadStatusReg(ARM64_SYSREG(3, 3, 14, 0, 2));
++#else
++    __asm__ __volatile__("mrs %0, cntvct_el0" : "=r"(val));
++#endif
++
++    return val;
++#else
++    uint32_t pmccntr, pmuseren, pmcntenset;
++    // Read the user mode Performance Monitoring Unit (PMU)
++    // User Enable Register (PMUSERENR) access permissions.
++    __asm__ __volatile__("mrc p15, 0, %0, c9, c14, 0" : "=r"(pmuseren));
++    if (pmuseren & 1) {  // Allows reading PMUSERENR for user mode code.
++        __asm__ __volatile__("mrc p15, 0, %0, c9, c12, 1" : "=r"(pmcntenset));
++        if (pmcntenset & 0x80000000UL) {  // Is it counting?
++            __asm__ __volatile__("mrc p15, 0, %0, c9, c13, 0" : "=r"(pmccntr));
++            // The counter is set up to count every 64th cycle
++            return (uint64_t) (pmccntr) << 6;
++        }
++    }
++
++    // Fallback to syscall as we can't enable PMUSERENR in user mode.
++    struct timeval tv;
++    gettimeofday(&tv, NULL);
++    return (uint64_t) (tv.tv_sec) * 1000000 + tv.tv_usec;
++#endif
++}
++
++#if defined(__GNUC__) || defined(__clang__)
++#pragma pop_macro("ALIGN_STRUCT")
++#pragma pop_macro("FORCE_INLINE")
++#endif
++
++#if defined(__GNUC__) && !defined(__clang__)
++#pragma GCC pop_options
++#endif
++
++#endif
+
+From 4b4ba1914adf6315c6a0af1f2e0ffe2fb8c0d57d Mon Sep 17 00:00:00 2001
+From: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
+Date: Sat, 27 Apr 2024 10:50:08 +0300
+Subject: [PATCH 2/3] Extract the arch specific CXXFLAGS
+
+Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
+---
+ Makefile | 3 ++-
+ 1 file changed, 2 insertions(+), 1 deletion(-)
+
+diff --git a/Makefile b/Makefile
+index 875d4ba..68c7736 100644
+--- a/Makefile
++++ b/Makefile
+@@ -1,6 +1,7 @@
+ CXX=		g++
+ CC=			gcc
+-CXXFLAGS=	-g -O3 -msse4.2 -mpopcnt -fomit-frame-pointer -Wall
++ARCH_FLAGS=-msse4.2 -mpopcnt
++CXXFLAGS=	-g -O3 $(ARCH_FLAGS) -fomit-frame-pointer -Wall
+ CFLAGS=		$(CXXFLAGS)
+ CPPFLAGS=
+ INCLUDES=
diff --git a/recipes/hifiasm/meta.yaml b/recipes/hifiasm/meta.yaml
index 1661bdfa4e853..404d3f626204f 100644
--- a/recipes/hifiasm/meta.yaml
+++ b/recipes/hifiasm/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.19.5" %}
+{% set version = "0.19.9" %}
 
 package:
   name: hifiasm
@@ -6,10 +6,14 @@ package:
 
 source:
   url: https://github.com/chhylp123/hifiasm/archive/{{ version }}.tar.gz
-  sha256: 18ed6889972e38d0088ccbdafee90756158977d6b1e1b6e56f522b870d71c072
+  sha256: 8b80c03ad50b65e197d7e633740a135ad1202949ebfe4dfb977f27f2f2ae83ee
+  patches:
+    - linux-aarch64-support.patch
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('hifiasm', max_pin="x") }}
 
 requirements:
   build:
@@ -26,4 +30,10 @@ test:
 about:
   home: https://github.com/chhylp123/hifiasm
   license: MIT
+  license_family: MIT
   summary: 'Haplotype-resolved assembler for accurate Hifi reads'
+  doc_url: https://hifiasm.readthedocs.io/en/latest/index.html
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/hificnv/meta.yaml b/recipes/hificnv/meta.yaml
index a42a4d1fd6322..e6d3537158283 100644
--- a/recipes/hificnv/meta.yaml
+++ b/recipes/hificnv/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "hificnv" %}
-{% set version = "0.1.6b" %}
-{% set hificnv_sha256 = "e7fb282bf85fa701fce41f2636e5e5af6292a67a1adb9c7aabc95815eff7fafc" %}
+{% set version = "1.0.0" %}
+{% set sha256 = "276afe35d34171f17a5f30e7aa35eb156765156536ae7411171376565d63cfe5" %}
 
 package:
   name: {{ name }}
@@ -8,11 +8,13 @@ package:
 
 source:
   url: https://github.com/PacificBiosciences/HiFiCNV/releases/download/v{{ version }}/hificnv-v{{ version }}-x86_64-unknown-linux-gnu.tar.gz
-  sha256: {{ hificnv_sha256 }}
+  sha256: {{ sha256 }}
 
 build:
   number: 0
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage('hificnv', max_pin="x") }}
 
 test:
   commands:
@@ -21,6 +23,7 @@ test:
 about:
   home: https://github.com/PacificBiosciences/HiFiCNV
   license: BSD-3-Clause-Clear
+  license_family: BSD
   summary: Copy number variant caller and depth visualization utility for PacBio HiFi reads
 
 extra:
diff --git a/recipes/hifieval/build.sh b/recipes/hifieval/build.sh
new file mode 100644
index 0000000000000..f46ee254e498e
--- /dev/null
+++ b/recipes/hifieval/build.sh
@@ -0,0 +1,3 @@
+#!/bin/bash
+mkdir -p $PREFIX/bin
+cp hifieval.py $PREFIX/bin
diff --git a/recipes/hifieval/meta.yaml b/recipes/hifieval/meta.yaml
new file mode 100644
index 0000000000000..a2fe3d11e95f6
--- /dev/null
+++ b/recipes/hifieval/meta.yaml
@@ -0,0 +1,31 @@
+{% set version = "0.4.0" %}
+
+package:
+  name: hifieval
+  version: {{ version }}
+
+source:
+  url: https://github.com/magspho/hifieval/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 06fbbc4736b9fdabac9b5bab7730089d22aa43a092753f277478e47da5b1640e 
+
+build:
+  number: 0
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage('hifieval', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python
+  run:
+    - python
+
+test:
+  commands:
+    - hifieval.py 2>&1 | grep "Usage"
+
+about:
+  home: https://github.com/magspho/hifieval
+  license: MIT
+  summary: 'Evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads)'
+
diff --git a/recipes/hifihla/build.sh b/recipes/hifihla/build.sh
new file mode 100644
index 0000000000000..0f329aac0ed0b
--- /dev/null
+++ b/recipes/hifihla/build.sh
@@ -0,0 +1,5 @@
+#!/usr/bin/env bash
+
+mkdir -p "${PREFIX}"/bin
+cp hifihla "${PREFIX}"/bin/
+chmod +x "${PREFIX}"/bin/hifihla
diff --git a/recipes/hifihla/meta.yaml b/recipes/hifihla/meta.yaml
new file mode 100644
index 0000000000000..76ca74fd77e83
--- /dev/null
+++ b/recipes/hifihla/meta.yaml
@@ -0,0 +1,30 @@
+{% set name = "hifihla" %}
+{% set version = "0.3.1" %}
+{% set hifihla_sha256 = "edeeb0208a545a0993df78989367da417b918621a8c76c69c16e86505c643dce" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  - url: https://github.com/PacificBiosciences/hifihla/releases/download/v{{ version }}/hifihla
+    sha256: {{ hifihla_sha256 }}
+
+about:
+  home: https://github.com/PacificBiosciences/hifihla
+  license: BSD-3-Clause-Clear
+  summary: An HLA star-calling tool for PacBio HiFi data types
+
+extra:
+  recipe-maintainers:
+    - jrharting
+    
+build:
+  number: 0
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage('hifihla', max_pin="x") }}
+
+test:
+  commands:
+    - hifihla -h
diff --git a/recipes/hiphase/meta.yaml b/recipes/hiphase/meta.yaml
index 38b939bf9f0b8..20a752dc5fa27 100644
--- a/recipes/hiphase/meta.yaml
+++ b/recipes/hiphase/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "hiphase" %}
-{% set version = "0.10.0" %}
-{% set hiphase_sha256 = "e22d3530a395bd218bd4634537f5b3c31a82cd8155849291c69d81c48f0c58fe" %}
+{% set version = "1.4.2" %}
+{% set hiphase_sha256 = "8e57dda28458286a8991be1e9466371c37d28557985fb3af160e3dd16388e925" %}
 
 package:
   name: {{ name }}
@@ -13,6 +13,8 @@ source:
 build:
   number: 0
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage('hiphase', max_pin="x") }}
 
 test:
   commands:
diff --git a/recipes/hisat2-pipeline/meta.yaml b/recipes/hisat2-pipeline/meta.yaml
new file mode 100644
index 0000000000000..dfa4a265057f7
--- /dev/null
+++ b/recipes/hisat2-pipeline/meta.yaml
@@ -0,0 +1,56 @@
+{% set name = "hisat2-pipeline" %}
+{% set version = "1.0.7" %}
+{% set sha256 = "4c21e62b8cf1e326b398eafb78e09d2b90843c852198bedb164ac5f1cfc7d33f" %}
+{% set DOI = "https://doi.org/10.5281/zenodo.10389729" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+build:
+  number: 0
+  noarch: python
+  script: {{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv
+  run_exports:
+  - {{ pin_subpackage('hisat2-pipeline', max_pin="x.x") }}
+  
+
+source:
+  url: https://github.com/mcamagna/HISAT2-pipeline/archive/refs/tags/v{{ version }}-bioconda.tar.gz
+  sha256: {{ sha256 }}
+
+requirements:
+  host:
+  - python >=3
+  - pip
+  run:
+  - python >=3
+  - hisat2
+  - stringtie
+  - samtools >=1.9
+  - pandas
+  - openpyxl
+
+test:
+  commands:
+  - hisat2-pipeline --version
+  - stringtie --version
+  - hisat2 --version
+  - samtools --version
+  imports:
+  - pandas
+  requires:
+  - stringtie
+  - hisat2
+  - samtools
+  
+about:
+  home: https://github.com/mcamagna/HISAT2-pipeline
+  license: GPL-3.0-or-later
+  license_family: GPL
+  license_file: LICENSE
+  summary: 'A pipeline to automatically run an RNA-seq analysis using HISAT2/Stringtie using default settings'
+  
+extra:
+  identifiers:
+  - {{ DOI }}
diff --git a/recipes/hitac/meta.yaml b/recipes/hitac/meta.yaml
index 0f87200bdff68..2c881eb7aac3f 100644
--- a/recipes/hitac/meta.yaml
+++ b/recipes/hitac/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "hitac" %}
-{% set version = "2.0.30" %}
+{% set version = "2.2.2" %}
 
 package:
   name: {{ name|lower }}
@@ -7,12 +7,14 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 1697dfc588bc433a361dda376dc3f6beb8d1f842bc545be5003ea02829ea67c9
+  sha256: 22e69ba328f4d48b6f1dd6c394f37fdc429317a5a810a41c91e8e03454f8db09
 
 build:
   noarch: python
   number: 0
   script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   host:
@@ -27,11 +29,16 @@ requirements:
     - scikit-learn >=0.24
 
 test:
+  commands:
+    - hitac-fit --help
+    - hitac-classify --help
+    - hitac-fit-filter --help
+    - hitac-filter --help
   imports:
     - hitac
 
 about:
-  home: https://github.com/mirand863/hitac
+  home: https://gitlab.com/dacs-hpi/hitac
   license: BSD-3-Clause
   license_family: BSD
   license_file: LICENSE
diff --git a/recipes/hlafreq/meta.yaml b/recipes/hlafreq/meta.yaml
index ad13a124afa23..f9b65c5f5093b 100644
--- a/recipes/hlafreq/meta.yaml
+++ b/recipes/hlafreq/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "HLAfreq" %}
-{% set version = "0.0.2" %}
+{% set version = "0.0.3" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: e43d70a876a6a245ecc2d6117947c5e1f6bce5824738a4d86dfecbe6c53e07f7
+  sha256: 93941536c4912180f12544251792d21098e47116a871c6c49565054987e1438f
 
 build:
   number: 0
   noarch: python
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('hlafreq', max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/hmftools-amber/AMBER.sh b/recipes/hmftools-amber/amber.sh
similarity index 100%
rename from recipes/hmftools-amber/AMBER.sh
rename to recipes/hmftools-amber/amber.sh
diff --git a/recipes/hmftools-amber/build.sh b/recipes/hmftools-amber/build.sh
index 60125bce3446e..b6c245c28bb8e 100644
--- a/recipes/hmftools-amber/build.sh
+++ b/recipes/hmftools-amber/build.sh
@@ -7,6 +7,6 @@ TGT="$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM"
 cd "${SRC_DIR}"
 mv amber*.jar $TGT/amber.jar
 
-cp $RECIPE_DIR/AMBER.sh $TGT/AMBER
-ln -s $TGT/AMBER $PREFIX/bin
-chmod 0755 "${PREFIX}/bin/AMBER"
+cp $RECIPE_DIR/amber.sh $TGT/amber
+ln -s $TGT/amber $PREFIX/bin
+chmod 0755 "${PREFIX}/bin/amber"
diff --git a/recipes/hmftools-amber/meta.yaml b/recipes/hmftools-amber/meta.yaml
index c3defd0a479d2..d9db37e2a08f3 100644
--- a/recipes/hmftools-amber/meta.yaml
+++ b/recipes/hmftools-amber/meta.yaml
@@ -1,17 +1,19 @@
-{% set version = "3.9" %}
-{% set sha256 = "a1f249d691c1d45f41e4b844d0f9e91dadf3920e340bc8d80c9130c4b7d2522b" %}
+{% set version = "4.0" %}
+{% set sha256 = "9fad1e78b4f177a8d2a9b6e29a34e86b82ec1239959b1f68c8f9c279fe21dc13" %}
 
 package:
   name: hmftools-amber
   version: '{{ version }}'
 
 source:
-  url: https://github.com/hartwigmedical/hmftools/releases/download/amber-v{{ version }}/amber-{{ version }}.jar
+  url: https://github.com/hartwigmedical/hmftools/releases/download/amber-v{{ version }}/amber_v{{ version }}.jar
   sha256: '{{ sha256 }}'
 
 build:
   noarch: generic
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("hmftools-amber", max_pin="x.x") }}
 
 requirements:
   run:
@@ -22,10 +24,10 @@ requirements:
 
 test:
   commands:
-    - 'AMBER 2>&1 | grep -q "tumor_bam"'
+    - 'amber -version | grep Amber'
 
 about:
   home: https://github.com/hartwigmedical/hmftools/blob/master/amber/README.md
-  license: MIT
-  license_family: MIT
-  summary: Generates a tumor BAF file for use in PURPLE
+  license: GPL-3.0-only
+  license_family: GPL3
+  summary: Generates a tumor BAF file for use in PURPLE.
diff --git a/recipes/hmftools-bam-tools/bamtools.sh b/recipes/hmftools-bam-tools/bamtools.sh
new file mode 100755
index 0000000000000..b62ff17d5670f
--- /dev/null
+++ b/recipes/hmftools-bam-tools/bamtools.sh
@@ -0,0 +1,69 @@
+#!/bin/bash
+# hmftools BamTools executable shell script
+# https://github.com/hartwigmedical/hmftools/tree/master/bam-tools
+set -eu -o pipefail
+
+export LC_ALL=en_US.UTF-8
+
+# Find original directory of bash script, resolving symlinks
+# http://stackoverflow.com/questions/59895/can-a-bash-script-tell-what-directory-its-stored-in/246128#246128
+SOURCE="${BASH_SOURCE[0]}"
+while [ -h "$SOURCE" ]; do # resolve $SOURCE until the file is no longer a symlink
+    DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
+    SOURCE="$(readlink "$SOURCE")"
+    [[ $SOURCE != /* ]] && SOURCE="$DIR/$SOURCE" # if $SOURCE was a relative symlink, we need to resolve it relative to the path where the symlink file was located
+done
+DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
+
+JAR_DIR=$DIR
+ENV_PREFIX="$(dirname $(dirname $DIR))"
+# Use Java installed with Anaconda to ensure correct version
+java="$ENV_PREFIX/bin/java"
+
+# if JAVA_HOME is set (non-empty), use it. Otherwise keep "java"
+if [ -n "${JAVA_HOME:=}" ]; then
+  if [ -e "$JAVA_HOME/bin/java" ]; then
+      java="$JAVA_HOME/bin/java"
+  fi
+fi
+
+# extract memory and system property Java arguments from the list of provided arguments
+# http://java.dzone.com/articles/better-java-shell-script
+default_jvm_mem_opts="-Xms512m -Xmx1g"
+jvm_mem_opts=""
+jvm_prop_opts=""
+pass_args=""
+for arg in "$@"; do
+    case $arg in
+        '-D'*)
+            jvm_prop_opts="$jvm_prop_opts $arg"
+            ;;
+        '-XX'*)
+            jvm_prop_opts="$jvm_prop_opts $arg"
+            ;;
+         '-Xm'*)
+            jvm_mem_opts="$jvm_mem_opts $arg"
+            ;;
+         *)
+	    if [[ ${pass_args} == '' ]] #needed to avoid preceeding space on first arg e.g. ' MarkDuplicates'
+            then
+                pass_args="$arg"
+	    else
+                pass_args="$pass_args \"$arg\"" #quotes later arguments to avoid problem with ()s in MarkDuplicates regex arg
+            fi
+            ;;
+    esac
+done
+
+if [ "$jvm_mem_opts" == "" ]; then
+    jvm_mem_opts="$default_jvm_mem_opts"
+fi
+
+pass_arr=($pass_args)
+if [[ ${pass_arr[0]:=} == com.hartwig.* ]]
+then
+    eval "$java" $jvm_mem_opts $jvm_prop_opts -cp "$JAR_DIR/bamtools.jar" $pass_args
+else
+    eval "$java" $jvm_mem_opts $jvm_prop_opts -jar "$JAR_DIR/bamtools.jar" $pass_args
+fi
+exit
diff --git a/recipes/hmftools-bam-tools/build.sh b/recipes/hmftools-bam-tools/build.sh
new file mode 100644
index 0000000000000..4f02d98736648
--- /dev/null
+++ b/recipes/hmftools-bam-tools/build.sh
@@ -0,0 +1,12 @@
+#!/bin/bash
+
+TGT="$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM"
+[ -d "$TGT" ] || mkdir -p "$TGT"
+[ -d "${PREFIX}/bin" ] || mkdir -p "${PREFIX}/bin"
+
+cd "${SRC_DIR}"
+mv bam-tools*.jar $TGT/bamtools.jar
+
+cp $RECIPE_DIR/bamtools.sh $TGT/bamtools
+ln -s $TGT/bamtools $PREFIX/bin
+chmod 0755 "${PREFIX}/bin/bamtools"
diff --git a/recipes/hmftools-bam-tools/meta.yaml b/recipes/hmftools-bam-tools/meta.yaml
new file mode 100644
index 0000000000000..68e1d104b1102
--- /dev/null
+++ b/recipes/hmftools-bam-tools/meta.yaml
@@ -0,0 +1,30 @@
+{% set version = "1.2.1" %}
+{% set sha256 = "3be174019a397a0ff7049be60c9abf8826c59b58b0a3b416fce26cf2a8c12695" %}
+
+package:
+  name: hmftools-bam-tools
+  version: '{{ version }}'
+
+source:
+  url: https://github.com/hartwigmedical/hmftools/releases/download/bam-tools-v{{ version }}/bam-tools_v{{ version }}.jar
+  sha256: '{{ sha256 }}'
+
+build:
+  noarch: generic
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("hmftools-bam-tools", max_pin="x.x") }}
+
+requirements:
+  run:
+    - openjdk >=8
+
+test:
+  commands:
+    - 'bamtools -version | grep BamTools'
+
+about:
+  home: https://github.com/hartwigmedical/hmftools/blob/master/bam-tools/README.md
+  license: GPL-3.0-only
+  license_family: GPL3
+  summary: Rapidly process BAMs for various tasks.
diff --git a/recipes/hmftools-cobalt/build.sh b/recipes/hmftools-cobalt/build.sh
index 990ea8634c707..092a2525d3136 100644
--- a/recipes/hmftools-cobalt/build.sh
+++ b/recipes/hmftools-cobalt/build.sh
@@ -5,8 +5,8 @@ TGT="$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM"
 [ -d "${PREFIX}/bin" ] || mkdir -p "${PREFIX}/bin"
 
 cd "${SRC_DIR}"
-mv *.jar $TGT/cobalt.jar
+mv cobalt*.jar $TGT/cobalt.jar
 
-cp $RECIPE_DIR/COBALT.sh $TGT/COBALT
-ln -s $TGT/COBALT $PREFIX/bin
-chmod 0755 "${PREFIX}/bin/COBALT"
+cp $RECIPE_DIR/cobalt.sh $TGT/cobalt
+ln -s $TGT/cobalt $PREFIX/bin
+chmod 0755 "${PREFIX}/bin/cobalt"
diff --git a/recipes/hmftools-cobalt/COBALT.sh b/recipes/hmftools-cobalt/cobalt.sh
similarity index 100%
rename from recipes/hmftools-cobalt/COBALT.sh
rename to recipes/hmftools-cobalt/cobalt.sh
diff --git a/recipes/hmftools-cobalt/meta.yaml b/recipes/hmftools-cobalt/meta.yaml
index 9a4418e1c2878..1819596469f37 100644
--- a/recipes/hmftools-cobalt/meta.yaml
+++ b/recipes/hmftools-cobalt/meta.yaml
@@ -1,17 +1,19 @@
-{% set version = "1.13" %}
-{% set sha256 = "d70a6bc73da518d159525caa5186551a771c88441efe1103a3425befd2445215" %}
+{% set version = "1.16" %}
+{% set sha256 = "9fe1d0f3a1f4270d354b6d3e4a6fa7a556dfbcb2e06775cd6328e1f5dba7a77c" %}
 
 package:
   name: hmftools-cobalt
   version: '{{ version }}'
 
 source:
-  url: https://github.com/hartwigmedical/hmftools/releases/download/cobalt-v{{ version }}/cobalt-{{ version }}.jar
+  url: https://github.com/hartwigmedical/hmftools/releases/download/cobalt-v{{ version }}/cobalt_v{{ version }}.jar
   sha256: '{{ sha256 }}'
 
 build:
   noarch: generic
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("hmftools-cobalt", max_pin="x.x") }}
 
 requirements:
   run:
@@ -21,10 +23,10 @@ requirements:
 
 test:
   commands:
-    - 'COBALT 2>&1 | grep -q "tumor_bam"'
+    - 'cobalt -version | grep Cobalt'
 
 about:
   home: https://github.com/hartwigmedical/hmftools/blob/master/cobalt/README.md
-  license: MIT
-  license_family: MIT
-  summary: Counts read starts within each 1000 base window to use in PURPLE
+  license: GPL-3.0-only
+  license_family: GPL3
+  summary: Calculate read-depth counts and GC ratios to use in PURPLE.
diff --git a/recipes/hmftools-cuppa/build.sh b/recipes/hmftools-cuppa/build.sh
new file mode 100644
index 0000000000000..a11f515c544f5
--- /dev/null
+++ b/recipes/hmftools-cuppa/build.sh
@@ -0,0 +1,14 @@
+#!/bin/bash
+
+TGT="$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM"
+[ -d "$TGT" ] || mkdir -p $TGT/{,chart/}
+[ -d "${PREFIX}/bin" ] || mkdir -p "${PREFIX}/bin"
+
+cd "${SRC_DIR}"
+mv jar/cuppa*.jar $TGT/cuppa.jar
+mv src/cuppa/src/main/resources/cuppa-chart/* $TGT/chart/
+
+cp $RECIPE_DIR/cuppa.sh $TGT/cuppa
+cp $RECIPE_DIR/cuppa-chart.sh $TGT/cuppa-chart
+ln -s $TGT/cuppa{,-chart} ${PREFIX}/bin/
+chmod 0755 ${PREFIX}/bin/cuppa{,-chart}
diff --git a/recipes/hmftools-cuppa/cuppa-chart.sh b/recipes/hmftools-cuppa/cuppa-chart.sh
new file mode 100755
index 0000000000000..98ffa9f9ad790
--- /dev/null
+++ b/recipes/hmftools-cuppa/cuppa-chart.sh
@@ -0,0 +1,23 @@
+#!/bin/bash
+# hmftools CUPPA chart executable shell script
+# https://github.com/hartwigmedical/hmftools/tree/master/cuppa
+set -eu -o pipefail
+
+export LC_ALL=en_US.UTF-8
+
+# Find original directory of bash script, resolving symlinks
+# http://stackoverflow.com/questions/59895/can-a-bash-script-tell-what-directory-its-stored-in/246128#246128
+SOURCE="${BASH_SOURCE[0]}"
+while [ -h "$SOURCE" ]; do # resolve $SOURCE until the file is no longer a symlink
+    DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
+    SOURCE="$(readlink "$SOURCE")"
+    [[ $SOURCE != /* ]] && SOURCE="$DIR/$SOURCE" # if $SOURCE was a relative symlink, we need to resolve it relative to the path where the symlink file was located
+done
+DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
+
+ENV_PREFIX="$(dirname $(dirname $DIR))"
+# Use Python installed with Anaconda to ensure correct version
+python="$ENV_PREFIX/bin/python"
+
+# Run with argument passthrough
+eval ${python} ${DIR}/chart/cuppa-chart.py ${@}
diff --git a/recipes/hmftools-cuppa/cuppa.sh b/recipes/hmftools-cuppa/cuppa.sh
new file mode 100755
index 0000000000000..33e257cb82296
--- /dev/null
+++ b/recipes/hmftools-cuppa/cuppa.sh
@@ -0,0 +1,69 @@
+#!/bin/bash
+# hmftools CUPPA executable shell script
+# https://github.com/hartwigmedical/hmftools/tree/master/cuppa
+set -eu -o pipefail
+
+export LC_ALL=en_US.UTF-8
+
+# Find original directory of bash script, resolving symlinks
+# http://stackoverflow.com/questions/59895/can-a-bash-script-tell-what-directory-its-stored-in/246128#246128
+SOURCE="${BASH_SOURCE[0]}"
+while [ -h "$SOURCE" ]; do # resolve $SOURCE until the file is no longer a symlink
+    DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
+    SOURCE="$(readlink "$SOURCE")"
+    [[ $SOURCE != /* ]] && SOURCE="$DIR/$SOURCE" # if $SOURCE was a relative symlink, we need to resolve it relative to the path where the symlink file was located
+done
+DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
+
+JAR_DIR=$DIR
+ENV_PREFIX="$(dirname $(dirname $DIR))"
+# Use Java installed with Anaconda to ensure correct version
+java="$ENV_PREFIX/bin/java"
+
+# if JAVA_HOME is set (non-empty), use it. Otherwise keep "java"
+if [ -n "${JAVA_HOME:=}" ]; then
+  if [ -e "$JAVA_HOME/bin/java" ]; then
+      java="$JAVA_HOME/bin/java"
+  fi
+fi
+
+# extract memory and system property Java arguments from the list of provided arguments
+# http://java.dzone.com/articles/better-java-shell-script
+default_jvm_mem_opts="-Xms512m -Xmx1g"
+jvm_mem_opts=""
+jvm_prop_opts=""
+pass_args=""
+for arg in "$@"; do
+    case $arg in
+        '-D'*)
+            jvm_prop_opts="$jvm_prop_opts $arg"
+            ;;
+        '-XX'*)
+            jvm_prop_opts="$jvm_prop_opts $arg"
+            ;;
+         '-Xm'*)
+            jvm_mem_opts="$jvm_mem_opts $arg"
+            ;;
+         *)
+	    if [[ ${pass_args} == '' ]] #needed to avoid preceeding space on first arg e.g. ' MarkDuplicates'
+            then
+                pass_args="$arg"
+	    else
+                pass_args="$pass_args \"$arg\"" #quotes later arguments to avoid problem with ()s in MarkDuplicates regex arg
+            fi
+            ;;
+    esac
+done
+
+if [ "$jvm_mem_opts" == "" ]; then
+    jvm_mem_opts="$default_jvm_mem_opts"
+fi
+
+pass_arr=($pass_args)
+if [[ ${pass_arr[0]:=} == org* ]]
+then
+    eval "$java" $jvm_mem_opts $jvm_prop_opts -cp "$JAR_DIR/cuppa.jar" $pass_args
+else
+    eval "$java" $jvm_mem_opts $jvm_prop_opts -jar "$JAR_DIR/cuppa.jar" $pass_args
+fi
+exit
diff --git a/recipes/hmftools-cuppa/meta.yaml b/recipes/hmftools-cuppa/meta.yaml
new file mode 100644
index 0000000000000..4c09d7747c28f
--- /dev/null
+++ b/recipes/hmftools-cuppa/meta.yaml
@@ -0,0 +1,46 @@
+{% set version = "1.8.1" %}
+{% set sha256_jar = "595cf6ba5a60a23cf18005cdc2aed18b3f48470f5479aa4e5ee6f386d23e00bb" %}
+{% set sha256_src = "39bb318f590ba905c18c0ed42411c97ba482ed98059e456a0f5ec42ad915c8e1" %}
+
+package:
+  name: hmftools-cuppa
+  version: '{{ version }}'
+
+source:
+  - folder: jar
+    url: https://github.com/hartwigmedical/hmftools/releases/download/cuppa-v{{ version }}/cuppa_v{{ version }}.jar
+    sha256: '{{ sha256_jar }}'
+  - folder: src
+    url: https://github.com/hartwigmedical/hmftools/archive/refs/tags/cuppa-v{{ version }}.tar.gz
+    sha256: '{{ sha256_src }}'
+
+build:
+  noarch: generic
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("hmftools-cuppa", max_pin="x.x") }}
+
+requirements:
+  run:
+    - openjdk >=8
+    - r-base >=4
+    - r-cowplot
+    - r-ggplot2
+    - r-gridextra
+    - r-stringi
+    - r-tidyr
+    - matplotlib-base >=3.3,<4
+    - numpy >=1.19,<2
+    - pandas >=1.1,<2
+    - scipy >=1,<2
+    - seaborn >=0.11,<1
+
+test:
+  commands:
+    - 'cuppa | grep Cuppa'
+
+about:
+  home: https://github.com/hartwigmedical/hmftools/blob/master/cuppa/README.md
+  license: GPL-3.0-only
+  license_family: GPL3
+  summary: Predict tissue of origin for tumor samples from WGTS data.
diff --git a/recipes/hmftools-gripss/gripss.sh b/recipes/hmftools-gripss/gripss.sh
index fe4779d219887..4798d83fbba05 100755
--- a/recipes/hmftools-gripss/gripss.sh
+++ b/recipes/hmftools-gripss/gripss.sh
@@ -1,5 +1,5 @@
 #!/bin/bash
-# hmftools gripss executable shell script
+# hmftools GRIPSS executable shell script
 # https://github.com/hartwigmedical/hmftools/tree/master/gripss
 set -eu -o pipefail
 
diff --git a/recipes/hmftools-gripss/meta.yaml b/recipes/hmftools-gripss/meta.yaml
index 83ceab912c633..60be672c9e61f 100644
--- a/recipes/hmftools-gripss/meta.yaml
+++ b/recipes/hmftools-gripss/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "2.3.2" %}
-{% set sha256 = "8d5e17ebe9f065d59782b45e0b8f9da2847fe9ed624da79237318362ef651aa1" %}
+{% set version = "2.4" %}
+{% set sha256 = "7e8fb3631c8bb410650e9d84d43d40c85322e0f73e537feae4d186d54d412411" %}
 
 package:
   name: hmftools-gripss
@@ -12,6 +12,8 @@ source:
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('hmftools-gripss', max_pin='x') }}
 
 requirements:
   run:
@@ -19,10 +21,10 @@ requirements:
 
 test:
   commands:
-    - 'gripss 2>&1 | grep -q "loading reference data"'
+    - 'gripss -version | grep Gripss'
 
 about:
   home: https://github.com/hartwigmedical/hmftools/tree/master/gripss
   license: GPL-3.0-only
   license_family: GPL
-  summary: 'GRIPSS applies a set of filtering and post processing steps on GRIDSS paired tumor-normal output to produce a high confidence set of somatic SV for a tumor sample.'
+  summary: GRIPSS applies a set of filtering and post processing steps on GRIDSS paired tumor-normal output to produce a high confidence set of somatic SV for a tumor sample.
diff --git a/recipes/hmftools-isofox/isofox.sh b/recipes/hmftools-isofox/isofox.sh
index 91bb67218a3dc..1c57bf313dfd7 100755
--- a/recipes/hmftools-isofox/isofox.sh
+++ b/recipes/hmftools-isofox/isofox.sh
@@ -1,5 +1,5 @@
 #!/bin/bash
-# hmftools isofox executable shell script
+# hmftools Isofox executable shell script
 # https://github.com/hartwigmedical/hmftools/tree/master/isofox
 set -eu -o pipefail
 
diff --git a/recipes/hmftools-isofox/meta.yaml b/recipes/hmftools-isofox/meta.yaml
index 9cc47f9fe3d22..e3cd0ebf68cfd 100644
--- a/recipes/hmftools-isofox/meta.yaml
+++ b/recipes/hmftools-isofox/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "1.6.2" %}
-{% set sha256 = "b681b48f0a0fc31de30a0721c0094f294b1e8fe1fb567447b7bf153120981cd2" %}
+{% set version = "1.7.1" %}
+{% set sha256 = "978db2ea04f4b8ba07910ad01c145bb23f57c279608b9bd7f27447403a5e25ae" %}
 
 package:
   name: hmftools-isofox
@@ -12,6 +12,8 @@ source:
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('hmftools-isofox', max_pin="x.x") }}
 
 requirements:
   run:
@@ -19,10 +21,10 @@ requirements:
 
 test:
   commands:
-    - 'isofox 2>&1 | grep -q "Isofox version"'
+    - 'isofox -version | grep Isofox'
 
 about:
   home: https://github.com/hartwigmedical/hmftools/tree/master/isofox
   license: GPL-3.0-only
   license_family: GPL
-  summary: 'Isofox is a tool for counting fragment support for identifying and counting gene and transcript features using genome aligned RNASeq data in tumor samples.'
+  summary: Isofox is a tool for counting fragment support for identifying and counting gene and transcript features using genome aligned RNASeq data in tumor samples.
diff --git a/recipes/hmftools-lilac/build.sh b/recipes/hmftools-lilac/build.sh
index a90fcee0b3303..a65c6f98505e2 100644
--- a/recipes/hmftools-lilac/build.sh
+++ b/recipes/hmftools-lilac/build.sh
@@ -7,6 +7,6 @@ TGT="$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM"
 cd "${SRC_DIR}"
 mv lilac*.jar $TGT/lilac.jar
 
-cp $RECIPE_DIR/LILAC.sh $TGT/LILAC
-ln -s $TGT/LILAC $PREFIX/bin
-chmod 0755 "${PREFIX}/bin/LILAC"
+cp $RECIPE_DIR/lilac.sh $TGT/lilac
+ln -s $TGT/lilac $PREFIX/bin
+chmod 0755 "${PREFIX}/bin/lilac"
diff --git a/recipes/hmftools-lilac/LILAC.sh b/recipes/hmftools-lilac/lilac.sh
similarity index 100%
rename from recipes/hmftools-lilac/LILAC.sh
rename to recipes/hmftools-lilac/lilac.sh
diff --git a/recipes/hmftools-lilac/meta.yaml b/recipes/hmftools-lilac/meta.yaml
index 0ca7fb2315494..c444f5345d0a3 100644
--- a/recipes/hmftools-lilac/meta.yaml
+++ b/recipes/hmftools-lilac/meta.yaml
@@ -1,17 +1,19 @@
-{% set version = "1.4.2" %}
-{% set sha256 = "1df4a34f3ea777db8da21cd9eaeca19a30795e5eb0bb44c5b38cd705df5c82fe" %}
+{% set version = "1.6" %}
+{% set sha256 = "d5f5fc5c2fb047fdbc6292a36dc3a164f5bbf820f87ceebafecf1412c41632f6" %}
 
 package:
   name: hmftools-lilac
   version: '{{ version }}'
 
 source:
-  url: 'https://github.com/hartwigmedical/hmftools/releases/download/lilac-v{{ version }}/lilac_v{{ version }}.jar'
+  url: https://github.com/hartwigmedical/hmftools/releases/download/lilac-v{{ version }}/lilac_v{{ version }}.jar
   sha256: '{{ sha256 }}'
 
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('hmftools-lilac', max_pin="x") }}
 
 requirements:
   run:
@@ -20,10 +22,10 @@ requirements:
 
 test:
   commands:
-    - 'LILAC 2>&1 | grep -q "LilacApplication"'
+    - 'lilac -version | grep Lilac'
 
 about:
   home: https://github.com/hartwigmedical/hmftools/blob/master/lilac/README.md
-  license:  "GNU General Public v3 (GPLv3)"
+  license: GPL-3.0-only
   license_family: GPL3
   summary: LILAC is a WGS tool to determine HLA Class I types.
diff --git a/recipes/hmftools-linx/linx.sh b/recipes/hmftools-linx/linx.sh
index 7fe7ef75a7882..7bc92d4b403cb 100755
--- a/recipes/hmftools-linx/linx.sh
+++ b/recipes/hmftools-linx/linx.sh
@@ -1,5 +1,5 @@
 #!/bin/bash
-# hmftools linx executable shell script
+# hmftools LINX executable shell script
 # https://github.com/hartwigmedical/hmftools/tree/master/linx
 set -eu -o pipefail
 
diff --git a/recipes/hmftools-linx/meta.yaml b/recipes/hmftools-linx/meta.yaml
index bf53e28de0d52..b7d512fde85ad 100644
--- a/recipes/hmftools-linx/meta.yaml
+++ b/recipes/hmftools-linx/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "1.23.6" %}
-{% set sha256 = "6dfeb9c15369d33953193e65db8454e678772c79218643bd122293e59288d297" %}
+{% set version = "1.25" %}
+{% set sha256 = "2fa9a91801239ded3e82fcd0ee9987e6181d0e400855420ef7f5000f3b4a96da" %}
 
 package:
   name: hmftools-linx
@@ -12,6 +12,8 @@ source:
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('hmftools-linx', max_pin="x") }}
 
 requirements:
   run:
@@ -27,10 +29,10 @@ requirements:
 
 test:
   commands:
-    - 'linx 2>&1 | grep -q "LINX version"'
+    - 'linx -version | grep Linx'
 
 about:
   home: https://github.com/hartwigmedical/hmftools/tree/master/linx
   license: GPL-3.0-only
   license_family: GPL
-  summary: Linx is an annotation, interpretation and visualisation tool for structural variants
+  summary: LINX is an annotation, interpretation and visualisation tool for structural variants.
diff --git a/recipes/hmftools-mark-dups/1.1.5/build.sh b/recipes/hmftools-mark-dups/1.1.5/build.sh
new file mode 100644
index 0000000000000..55784e8b35b79
--- /dev/null
+++ b/recipes/hmftools-mark-dups/1.1.5/build.sh
@@ -0,0 +1,12 @@
+#!/bin/bash
+
+TGT="$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM"
+[ -d "$TGT" ] || mkdir -p "$TGT"
+[ -d "${PREFIX}/bin" ] || mkdir -p "${PREFIX}/bin"
+
+cd "${SRC_DIR}"
+mv mark-dups*.jar $TGT/markdups.jar
+
+cp $RECIPE_DIR/markdups.sh $TGT/markdups
+ln -s $TGT/markdups $PREFIX/bin
+chmod 0755 "${PREFIX}/bin/markdups"
diff --git a/recipes/hmftools-mark-dups/1.1.5/markdups.sh b/recipes/hmftools-mark-dups/1.1.5/markdups.sh
new file mode 100755
index 0000000000000..c69115b6bee1d
--- /dev/null
+++ b/recipes/hmftools-mark-dups/1.1.5/markdups.sh
@@ -0,0 +1,69 @@
+#!/bin/bash
+# hmftools MarkDups executable shell script
+# https://github.com/hartwigmedical/hmftools/tree/master/mark-dups
+set -eu -o pipefail
+
+export LC_ALL=en_US.UTF-8
+
+# Find original directory of bash script, resolving symlinks
+# http://stackoverflow.com/questions/59895/can-a-bash-script-tell-what-directory-its-stored-in/246128#246128
+SOURCE="${BASH_SOURCE[0]}"
+while [ -h "$SOURCE" ]; do # resolve $SOURCE until the file is no longer a symlink
+    DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
+    SOURCE="$(readlink "$SOURCE")"
+    [[ $SOURCE != /* ]] && SOURCE="$DIR/$SOURCE" # if $SOURCE was a relative symlink, we need to resolve it relative to the path where the symlink file was located
+done
+DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
+
+JAR_DIR=$DIR
+ENV_PREFIX="$(dirname $(dirname $DIR))"
+# Use Java installed with Anaconda to ensure correct version
+java="$ENV_PREFIX/bin/java"
+
+# if JAVA_HOME is set (non-empty), use it. Otherwise keep "java"
+if [ -n "${JAVA_HOME:=}" ]; then
+  if [ -e "$JAVA_HOME/bin/java" ]; then
+      java="$JAVA_HOME/bin/java"
+  fi
+fi
+
+# extract memory and system property Java arguments from the list of provided arguments
+# http://java.dzone.com/articles/better-java-shell-script
+default_jvm_mem_opts="-Xms512m -Xmx1g"
+jvm_mem_opts=""
+jvm_prop_opts=""
+pass_args=""
+for arg in "$@"; do
+    case $arg in
+        '-D'*)
+            jvm_prop_opts="$jvm_prop_opts $arg"
+            ;;
+        '-XX'*)
+            jvm_prop_opts="$jvm_prop_opts $arg"
+            ;;
+         '-Xm'*)
+            jvm_mem_opts="$jvm_mem_opts $arg"
+            ;;
+         *)
+	    if [[ ${pass_args} == '' ]] #needed to avoid preceeding space on first arg e.g. ' MarkDuplicates'
+            then 
+                pass_args="$arg" 
+	    else
+                pass_args="$pass_args \"$arg\"" #quotes later arguments to avoid problem with ()s in MarkDuplicates regex arg
+            fi
+            ;;
+    esac
+done
+
+if [ "$jvm_mem_opts" == "" ]; then
+    jvm_mem_opts="$default_jvm_mem_opts"
+fi
+
+pass_arr=($pass_args)
+if [[ ${pass_arr[0]:=} == com.hartwig.* ]]
+then
+    eval "$java" $jvm_mem_opts $jvm_prop_opts -cp "$JAR_DIR/markdups.jar" $pass_args
+else
+    eval "$java" $jvm_mem_opts $jvm_prop_opts -jar "$JAR_DIR/markdups.jar" $pass_args
+fi
+exit
diff --git a/recipes/hmftools-mark-dups/1.1.5/meta.yaml b/recipes/hmftools-mark-dups/1.1.5/meta.yaml
new file mode 100644
index 0000000000000..813e664b97371
--- /dev/null
+++ b/recipes/hmftools-mark-dups/1.1.5/meta.yaml
@@ -0,0 +1,32 @@
+{% set version = "1.1.5" %}
+{% set sha256 = "59cc87f1e7923b11d5c1b59c3c8fb531ace6d5d39dac61a165d76b4d1c472c10" %}
+
+package:
+  name: hmftools-mark-dups
+  version: '{{ version }}'
+
+source:
+  url: https://github.com/hartwigmedical/hmftools/releases/download/mark-dups-v{{ version }}/mark-dups_v{{ version }}.jar
+  sha256: '{{ sha256 }}'
+
+build:
+  noarch: generic
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('hmftools-mark-dups', max_pin="x.x") }}
+
+requirements:
+  run:
+    - openjdk >=8
+    - sambamba >=1.0.1
+    - samtools >=1.17
+
+test:
+  commands:
+    - 'markdups -version | grep MarkDups'
+
+about:
+  home: https://github.com/hartwigmedical/hmftools/tree/master/mark-dups
+  license: GPL-3.0-only
+  license_family: GPL
+  summary: Mark read duplicates and form consenus sequences
diff --git a/recipes/hmftools-mark-dups/build.sh b/recipes/hmftools-mark-dups/build.sh
new file mode 100644
index 0000000000000..55784e8b35b79
--- /dev/null
+++ b/recipes/hmftools-mark-dups/build.sh
@@ -0,0 +1,12 @@
+#!/bin/bash
+
+TGT="$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM"
+[ -d "$TGT" ] || mkdir -p "$TGT"
+[ -d "${PREFIX}/bin" ] || mkdir -p "${PREFIX}/bin"
+
+cd "${SRC_DIR}"
+mv mark-dups*.jar $TGT/markdups.jar
+
+cp $RECIPE_DIR/markdups.sh $TGT/markdups
+ln -s $TGT/markdups $PREFIX/bin
+chmod 0755 "${PREFIX}/bin/markdups"
diff --git a/recipes/hmftools-mark-dups/markdups.sh b/recipes/hmftools-mark-dups/markdups.sh
new file mode 100755
index 0000000000000..c69115b6bee1d
--- /dev/null
+++ b/recipes/hmftools-mark-dups/markdups.sh
@@ -0,0 +1,69 @@
+#!/bin/bash
+# hmftools MarkDups executable shell script
+# https://github.com/hartwigmedical/hmftools/tree/master/mark-dups
+set -eu -o pipefail
+
+export LC_ALL=en_US.UTF-8
+
+# Find original directory of bash script, resolving symlinks
+# http://stackoverflow.com/questions/59895/can-a-bash-script-tell-what-directory-its-stored-in/246128#246128
+SOURCE="${BASH_SOURCE[0]}"
+while [ -h "$SOURCE" ]; do # resolve $SOURCE until the file is no longer a symlink
+    DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
+    SOURCE="$(readlink "$SOURCE")"
+    [[ $SOURCE != /* ]] && SOURCE="$DIR/$SOURCE" # if $SOURCE was a relative symlink, we need to resolve it relative to the path where the symlink file was located
+done
+DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
+
+JAR_DIR=$DIR
+ENV_PREFIX="$(dirname $(dirname $DIR))"
+# Use Java installed with Anaconda to ensure correct version
+java="$ENV_PREFIX/bin/java"
+
+# if JAVA_HOME is set (non-empty), use it. Otherwise keep "java"
+if [ -n "${JAVA_HOME:=}" ]; then
+  if [ -e "$JAVA_HOME/bin/java" ]; then
+      java="$JAVA_HOME/bin/java"
+  fi
+fi
+
+# extract memory and system property Java arguments from the list of provided arguments
+# http://java.dzone.com/articles/better-java-shell-script
+default_jvm_mem_opts="-Xms512m -Xmx1g"
+jvm_mem_opts=""
+jvm_prop_opts=""
+pass_args=""
+for arg in "$@"; do
+    case $arg in
+        '-D'*)
+            jvm_prop_opts="$jvm_prop_opts $arg"
+            ;;
+        '-XX'*)
+            jvm_prop_opts="$jvm_prop_opts $arg"
+            ;;
+         '-Xm'*)
+            jvm_mem_opts="$jvm_mem_opts $arg"
+            ;;
+         *)
+	    if [[ ${pass_args} == '' ]] #needed to avoid preceeding space on first arg e.g. ' MarkDuplicates'
+            then 
+                pass_args="$arg" 
+	    else
+                pass_args="$pass_args \"$arg\"" #quotes later arguments to avoid problem with ()s in MarkDuplicates regex arg
+            fi
+            ;;
+    esac
+done
+
+if [ "$jvm_mem_opts" == "" ]; then
+    jvm_mem_opts="$default_jvm_mem_opts"
+fi
+
+pass_arr=($pass_args)
+if [[ ${pass_arr[0]:=} == com.hartwig.* ]]
+then
+    eval "$java" $jvm_mem_opts $jvm_prop_opts -cp "$JAR_DIR/markdups.jar" $pass_args
+else
+    eval "$java" $jvm_mem_opts $jvm_prop_opts -jar "$JAR_DIR/markdups.jar" $pass_args
+fi
+exit
diff --git a/recipes/hmftools-mark-dups/meta.yaml b/recipes/hmftools-mark-dups/meta.yaml
new file mode 100644
index 0000000000000..d976fe5e2671d
--- /dev/null
+++ b/recipes/hmftools-mark-dups/meta.yaml
@@ -0,0 +1,32 @@
+{% set version = "1.1.6" %}
+{% set sha256 = "417f58daa7dd5fd51328173e6fda1e72fdbe55cb6868ad999671e039a62b2732" %}
+
+package:
+  name: hmftools-mark-dups
+  version: '{{ version }}'
+
+source:
+  url: https://github.com/hartwigmedical/hmftools/releases/download/mark-dups-v{{ version }}/mark-dups_v{{ version }}.jar
+  sha256: '{{ sha256 }}'
+
+build:
+  noarch: generic
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('hmftools-mark-dups', max_pin="x.x") }}
+
+requirements:
+  run:
+    - openjdk >=8
+    - sambamba >=1.0
+    - samtools >=1.17
+
+test:
+  commands:
+    - 'markdups -version | grep MarkDups'
+
+about:
+  home: https://github.com/hartwigmedical/hmftools/tree/master/mark-dups
+  license: GPL-3.0-only
+  license_family: GPL
+  summary: Mark read duplicates and form consenus sequences
diff --git a/recipes/hmftools-orange/meta.yaml b/recipes/hmftools-orange/meta.yaml
index 25daf8afb53d8..d49445d0d739d 100644
--- a/recipes/hmftools-orange/meta.yaml
+++ b/recipes/hmftools-orange/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "1.10.2" %}
-{% set sha256 = "3ecf59559f8c798fcd9ea7caa5c9baa436114fbaa85de1faf2c04068584a51f1" %}
+{% set version = "3.4.0" %}
+{% set sha256 = "a9a4da946a938f3964ada5f213514ee65c4991a7cf9f263f48e55cfbed774196" %}
 
 package:
   name: hmftools-orange
@@ -12,6 +12,8 @@ source:
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('hmftools-orange', max_pin="x") }}
 
 requirements:
   run:
diff --git a/recipes/hmftools-pave/meta.yaml b/recipes/hmftools-pave/meta.yaml
index 8bb0808513d02..84156f65d0e6f 100644
--- a/recipes/hmftools-pave/meta.yaml
+++ b/recipes/hmftools-pave/meta.yaml
@@ -1,17 +1,19 @@
-{% set version = "1.4.1" %}
-{% set sha256 = "eb6dbf7ff5d2729807e5a33709b256fa1537235eb263c1f0b34fba45e60fc4b3" %}
+{% set version = "1.6" %}
+{% set sha256 = "c553b5224dae4f61958030d2b544ad990aca6fde145ee03f43214856f3dbf634" %}
 
 package:
   name: hmftools-pave
   version: '{{ version }}'
 
 source:
-  url: 'https://github.com/hartwigmedical/hmftools/releases/download/pave-v{{ version }}/pave_v{{ version }}.jar'
+  url: https://github.com/hartwigmedical/hmftools/releases/download/pave-v{{ version }}/pave_v{{ version }}.jar
   sha256: '{{ sha256 }}'
 
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('hmftools-pave', max_pin="x.x") }}
 
 requirements:
   run:
@@ -20,10 +22,10 @@ requirements:
 
 test:
   commands:
-    - 'pave 2>&1 | grep -q "Pave version"'
+    - 'pave -version | grep Pave'
 
 about:
   home: https://github.com/hartwigmedical/hmftools/tree/master/pave
   license: GPL-3.0-only
   license_family: GPL
-  summary: Pave annotates a somatic variant VCF with gene and transcript coding and protein effects.
+  summary: PAVE annotates SNV/MNV/INDEL calls with consequence on corresponding genes, transcripts, and proteins.
diff --git a/recipes/hmftools-pave/pave.sh b/recipes/hmftools-pave/pave.sh
index 73ae4b947b422..d3108a6244903 100755
--- a/recipes/hmftools-pave/pave.sh
+++ b/recipes/hmftools-pave/pave.sh
@@ -1,5 +1,5 @@
 #!/bin/bash
-# hmftools pave executable shell script
+# hmftools PAVE executable shell script
 # https://github.com/hartwigmedical/hmftools/tree/master/pave
 set -eu -o pipefail
 
diff --git a/recipes/hmftools-purple/build.sh b/recipes/hmftools-purple/build.sh
index 963fc41560196..05ac0857d05be 100644
--- a/recipes/hmftools-purple/build.sh
+++ b/recipes/hmftools-purple/build.sh
@@ -7,6 +7,6 @@ TGT="$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM"
 cd "${SRC_DIR}"
 mv purple*.jar $TGT/purple.jar
 
-cp $RECIPE_DIR/PURPLE.sh $TGT/PURPLE
-ln -s $TGT/PURPLE $PREFIX/bin
-chmod 0755 "${PREFIX}/bin/PURPLE"
+cp $RECIPE_DIR/purple.sh $TGT/purple
+ln -s $TGT/purple $PREFIX/bin
+chmod 0755 "${PREFIX}/bin/purple"
diff --git a/recipes/hmftools-purple/meta.yaml b/recipes/hmftools-purple/meta.yaml
index 929b228c38a8b..ae81543b0e19c 100644
--- a/recipes/hmftools-purple/meta.yaml
+++ b/recipes/hmftools-purple/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "3.7.1" %}
-{% set sha256 = "23c5fc9832bfd5e3686c8d2ae2285aff4d6c2ac4683021ff17ec59c48d75694c" %}
+{% set version = "4.0.2" %}
+{% set sha256 = "fb534734b4a0833c8d68591e009caea5b654714211a95f23570c1fca9bfa57a9" %}
 
 package:
   name: hmftools-purple
@@ -12,6 +12,8 @@ source:
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('hmftools-purple', max_pin="x") }}
 
 requirements:
   run:
@@ -28,10 +30,10 @@ requirements:
 
 test:
   commands:
-    - 'PURPLE -version'
+    - 'purple -version | grep Purple'
 
 about:
-  home: https://github.com/hartwigmedical/hmftools/tree/master/purity-ploidy-estimator
-  license: MIT
-  license_family: MIT
-  summary: Purity/ploidy estimator. Leverages the read depth and tumor BAF to estimate the purity of a sample and generate a copy number profile
+  home: https://github.com/hartwigmedical/hmftools/tree/master/purple
+  license: GPL-3.0-only
+  license_family: GPL3
+  summary: PURPLE is a purity ploidy estimator for tumor samples.
diff --git a/recipes/hmftools-purple/PURPLE.sh b/recipes/hmftools-purple/purple.sh
similarity index 94%
rename from recipes/hmftools-purple/PURPLE.sh
rename to recipes/hmftools-purple/purple.sh
index 72618b94ab858..68dfb735ed9b0 100755
--- a/recipes/hmftools-purple/PURPLE.sh
+++ b/recipes/hmftools-purple/purple.sh
@@ -1,6 +1,6 @@
 #!/bin/bash
 # hmftools PURPLE executable shell script
-# https://github.com/hartwigmedical/hmftools/tree/master/purity-ploidy-estimator
+# https://github.com/hartwigmedical/hmftools/tree/master/purple
 set -eu -o pipefail
 
 export LC_ALL=en_US.UTF-8
@@ -46,8 +46,8 @@ for arg in "$@"; do
             ;;
          *)
 	    if [[ ${pass_args} == '' ]] #needed to avoid preceeding space on first arg e.g. ' MarkDuplicates'
-            then 
-                pass_args="$arg" 
+            then
+                pass_args="$arg"
 	    else
                 pass_args="$pass_args \"$arg\"" #quotes later arguments to avoid problem with ()s in MarkDuplicates regex arg
             fi
diff --git a/recipes/hmftools-sage/build.sh b/recipes/hmftools-sage/build.sh
index 2763b3328ad10..d7f5400c6ef21 100644
--- a/recipes/hmftools-sage/build.sh
+++ b/recipes/hmftools-sage/build.sh
@@ -7,6 +7,6 @@ TGT="$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM"
 cd "${SRC_DIR}"
 mv sage*.jar $TGT/sage.jar
 
-cp $RECIPE_DIR/SAGE.sh $TGT/SAGE
-ln -s $TGT/SAGE $PREFIX/bin
-chmod 0755 "${PREFIX}/bin/SAGE"
+cp $RECIPE_DIR/sage.sh $TGT/sage
+ln -s $TGT/sage $PREFIX/bin
+chmod 0755 "${PREFIX}/bin/sage"
diff --git a/recipes/hmftools-sage/meta.yaml b/recipes/hmftools-sage/meta.yaml
index 04abf8dab70df..61982d0028841 100644
--- a/recipes/hmftools-sage/meta.yaml
+++ b/recipes/hmftools-sage/meta.yaml
@@ -1,17 +1,19 @@
-{% set version = "3.2.3" %}
-{% set sha256 = "a49438afee0f7595ff13f7d44e5ae08edc785dc8f04ef605482d9af59ae940f9" %}
+{% set version = "3.4.3" %}
+{% set sha256 = "bf5c0369ab7449915826c2ba726ed07bd9883c90965919971b5f4dc1ef3684fd" %}
 
 package:
   name: hmftools-sage
   version: '{{ version }}'
 
 source:
-  url: 'https://github.com/hartwigmedical/hmftools/releases/download/sage-v{{ version }}/sage_v{{ version }}.jar'
+  url: https://github.com/hartwigmedical/hmftools/releases/download/sage-v{{ version }}/sage_v{{ version }}.jar
   sha256: '{{ sha256 }}'
 
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('hmftools-sage', max_pin="x") }}
 
 requirements:
   run:
@@ -27,10 +29,10 @@ requirements:
 
 test:
   commands:
-    - 'SAGE 2>&1 | grep -q "Sage version"'
+    - 'sage -version | grep Sage'
 
 about:
   home: https://github.com/hartwigmedical/hmftools/tree/master/sage
   license: GPL-3.0-only
   license_family: GPL
-  summary: SAGE is a somatic SNV, MNV and small INDEL caller optimised to call narrow regions of the genome with high prior chance of a variant with very high sensitivity.
+  summary: SAGE is a somatic SNV, MNV and small INDEL caller optimised 100x tumor / 40x normal coverage, but has a flexible set of filters that can be adapted to lower or higher depth coverage.
diff --git a/recipes/hmftools-sage/SAGE.sh b/recipes/hmftools-sage/sage.sh
similarity index 95%
rename from recipes/hmftools-sage/SAGE.sh
rename to recipes/hmftools-sage/sage.sh
index 5e9159203c37f..0164c0f1b3c2c 100755
--- a/recipes/hmftools-sage/SAGE.sh
+++ b/recipes/hmftools-sage/sage.sh
@@ -1,6 +1,6 @@
 #!/bin/bash
 # hmftools SAGE executable shell script
-# https://github.com/hartwigmedical/hmftools/tree/master/SAGE
+# https://github.com/hartwigmedical/hmftools/tree/master/sage
 set -eu -o pipefail
 
 export LC_ALL=en_US.UTF-8
@@ -60,7 +60,7 @@ if [ "$jvm_mem_opts" == "" ]; then
 fi
 
 pass_arr=($pass_args)
-if [[ ${pass_arr[0]:=} == org* ]]
+if [[ ${pass_arr[0]:=} == com.hartwig.* ]]
 then
     eval "$java" $jvm_mem_opts $jvm_prop_opts -cp "$JAR_DIR/sage.jar" $pass_args
 else
diff --git a/recipes/hmftools-sigs/meta.yaml b/recipes/hmftools-sigs/meta.yaml
index 2a510330aeb72..386cadd737c51 100644
--- a/recipes/hmftools-sigs/meta.yaml
+++ b/recipes/hmftools-sigs/meta.yaml
@@ -1,17 +1,19 @@
-{% set version = "1.1" %}
-{% set sha256 = "ef38b1d36e6c326ff06e71f0d690b7503fe38efc91b1e4c4b170277f83093276" %}
+{% set version = "1.2.1" %}
+{% set sha256 = "b2af1ce3ac401adb145d77b031deb0edcc1d1a5257686cb67a1fc3355a7820e5" %}
 
 package:
   name: hmftools-sigs
   version: '{{ version }}'
 
 source:
-  url: 'https://github.com/hartwigmedical/hmftools/releases/download/sigs-v{{ version }}/sigs_v{{ version }}.jar'
+  url: https://github.com/hartwigmedical/hmftools/releases/download/sigs-v{{ version }}/sigs_v{{ version }}.jar
   sha256: '{{ sha256 }}'
 
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('hmftools-sigs', max_pin='x') }}
 
 requirements:
   run:
@@ -20,10 +22,10 @@ requirements:
 
 test:
   commands:
-    - 'sigs 2>&1 | grep -q "running sample signature fit"'
+    - 'sigs -version | grep -o Sigs'
 
 about:
   home: https://github.com/hartwigmedical/hmftools/blob/master/sigs/README.md
-  license:  "GNU General Public v3 (GPLv3)"
+  license: GPL-3.0-only
   license_family: GPL3
   summary: Fits sample SNV counts to trinucleotide signature definitions.
diff --git a/recipes/hmftools-sigs/sigs.sh b/recipes/hmftools-sigs/sigs.sh
index 85cccef267a09..14bd78f53b009 100755
--- a/recipes/hmftools-sigs/sigs.sh
+++ b/recipes/hmftools-sigs/sigs.sh
@@ -1,5 +1,5 @@
 #!/bin/bash
-# hmftools sigs  executable shell script
+# hmftools Sigs executable shell script
 # https://github.com/hartwigmedical/hmftools/tree/master/sigs
 set -eu -o pipefail
 
diff --git a/recipes/hmftools-sv-prep/build.sh b/recipes/hmftools-sv-prep/build.sh
index 2089a1b4204e8..5b0bbef52c376 100644
--- a/recipes/hmftools-sv-prep/build.sh
+++ b/recipes/hmftools-sv-prep/build.sh
@@ -7,6 +7,10 @@ TGT="$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM"
 cd "${SRC_DIR}"
 mv sv-prep*.jar $TGT/sv-prep.jar
 
-cp $RECIPE_DIR/SvPrep.sh $TGT/SvPrep
-ln -s $TGT/SvPrep $PREFIX/bin
-chmod 0755 "${PREFIX}/bin/SvPrep"
+cp $RECIPE_DIR/svprep.sh $TGT/svprep
+cp $RECIPE_DIR/gridss_shell_with_jar_entrypoint $TGT/
+cp $RECIPE_DIR/gridss_svprep.sh $TGT/gridss_svprep
+
+ln -s $TGT/svprep $PREFIX/bin/
+ln -s $TGT/gridss_shell_with_jar_entrypoint $PREFIX/bin/gridss_svprep
+chmod 0755 ${PREFIX}/bin/{gridss_,}svprep
diff --git a/recipes/hmftools-sv-prep/gridss_shell_with_jar_entrypoint b/recipes/hmftools-sv-prep/gridss_shell_with_jar_entrypoint
new file mode 100644
index 0000000000000..1b8d632b76499
--- /dev/null
+++ b/recipes/hmftools-sv-prep/gridss_shell_with_jar_entrypoint
@@ -0,0 +1,30 @@
+#!/bin/bash
+# Wrapper scripts that sets --jar gridss.jar command line argument
+# so users don't need to know the path to the GRIDSS jar
+
+# Adapted from bioconda-recipes/picard/picard.sh
+set -o pipefail
+
+resolve_source_directory() {
+     # Find original directory of bash script, resolving symlinks
+     # http://stackoverflow.com/questions/59895/can-a-bash-script-tell-what-directory-its-stored-in/246128#246128
+     local SOURCE="${1}"
+     while [ -h "$SOURCE" ]; do # resolve $SOURCE until the file is no longer a symlink
+         DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
+         SOURCE="$(readlink "$SOURCE")"
+         [[ $SOURCE != /* ]] && SOURCE="$DIR/$SOURCE" # if $SOURCE was a relative symlink, we need to resolve it relative to the path where the symlink file was located
+     done
+     DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
+     echo $DIR
+}
+
+# Sanity check for GRIDSS dependency
+if ! hash gridss 2>/dev/null; then
+    echo "Could not find 'gridss' in PATH, exiting";
+    exit 1;
+fi
+
+SCRIPT_DIR=$(resolve_source_directory ${BASH_SOURCE[0]})
+JAR_DIR=$(resolve_source_directory $(which gridss))
+
+$SCRIPT_DIR/$(basename $0)  --jar "$JAR_DIR/gridss.jar" "$@"
diff --git a/recipes/hmftools-sv-prep/gridss_svprep.sh b/recipes/hmftools-sv-prep/gridss_svprep.sh
new file mode 100755
index 0000000000000..9e0f9f0d519a4
--- /dev/null
+++ b/recipes/hmftools-sv-prep/gridss_svprep.sh
@@ -0,0 +1,832 @@
+#!/bin/bash
+# GRIDSS execution script using SvPrep BAMs
+
+getopt --test
+if [[ ${PIPESTATUS[0]} -ne 4 ]]; then
+	echo 'WARNING: "getopt --test"` failed in this environment.' 1>&2
+	echo "WARNING: The version of getopt(1) installed on this system might not be compatible with the GRIDSS driver script." 1>&2
+fi
+unset DISPLAY # Prevents errors attempting to connecting to an X server when starting the R plotting device
+ulimit -n $(ulimit -Hn 2>/dev/null) 2>/dev/null # Reduce likelihood of running out of open file handles
+set -o errexit -o pipefail -o noclobber -o nounset
+last_command=""
+current_command=""
+trap 'last_command=$current_command; current_command=$BASH_COMMAND' DEBUG
+trap 'echo "\"${last_command}\" command completed with exit code $?."' EXIT
+#253 forcing C locale for everything
+export LC_ALL=C
+
+EX_USAGE=64
+EX_NOINPUT=66
+EX_CANTCREAT=73
+EX_CONFIG=78
+
+workingdir="."
+reference=""
+output_vcf=""
+assembly=""
+threads=8
+jvmheap="30g"
+otherjvmheap="4g"
+blacklist=""
+metricsrecords=10000000
+maxcoverage=50000
+config_file=""
+labels=""
+bams=""
+filtered_bams=""
+full_bams=""
+keepTempFiles="false"
+
+steps="all"
+do_preprocess=false
+do_assemble=false
+do_call=false
+
+USAGE_MESSAGE="
+Usage: gridss [options] -r <reference.fa> -o <output.vcf.gz> -a <assembly.bam> input1.bam [input2.bam [...]]
+
+    -r/--reference: reference genome to use.
+    -o/--output: output VCF.
+    -a/--assembly: location of the GRIDSS assembly BAM. This file will be
+        created by GRIDSS.
+    -t/--threads: number of threads to use. (Default: $threads)
+    -j/--jar: location of GRIDSS jar
+    -w/--workingdir: directory to place GRIDSS intermediate and temporary files
+        .gridss.working subdirectories will be created. (Default: $workingdir)
+    -s/--steps: processing steps to run. Defaults to all steps.
+        Multiple steps are specified using comma separators. Possible steps are:
+        preprocess, assemble, call, all
+    -e/--blacklist: BED file containing regions to ignore
+    -c/--configuration: configuration file use to override default GRIDSS
+        settings.
+    -l/--labels: comma separated labels to use in the output VCF for the input
+        files. Supporting read counts for input files with the same label are
+        aggregated (useful for multiple sequencing runs of the same sample).
+        Labels default to input filenames, unless a single read group with a
+        non-empty sample name exists in which case the read group sample name
+        is used (which can be disabled by \"useReadGroupSampleNameCategoryLabel=false\"
+        in the configuration file). If labels are specified, they must be
+        specified for all input files.
+    -b/bams: comma separated full-path BAM files
+    -f/filtered_bams: comma separated full-path filtered BAM files
+    --jvmheap: size of JVM heap for the high-memory component of assembly and variant calling. (Default: $jvmheap)
+    --otherjvmheap: size of JVM heap for everything else. Useful to prevent
+        java out of memory errors when using large (>4Gb) reference genomes.
+        Note that some parts of assembly and variant calling use this heap
+        size. (Default: $otherjvmheap)
+    "
+
+OPTIONS=r:o:a:t:j:w:e:s:c:l:b:f:
+LONGOPTS=reference:,output:,assembly:,threads:,jar:,workingdir:,jvmheap:,otherjvmheap:,blacklist:,steps:,configuration:,labels:,bams:,filtered_bams:
+! PARSED=$(getopt --options=$OPTIONS --longoptions=$LONGOPTS --name "$0" -- "$@")
+if [[ ${PIPESTATUS[0]} -ne 0 ]]; then
+	# e.g. return value is 1
+	#  then getopt has complained about wrong arguments to stdout
+	echo "$USAGE_MESSAGE" 1>&2
+	exit $EX_USAGE
+fi
+eval set -- "$PARSED"
+
+POSITIONAL_ARGS=()
+
+#while true; do
+while [[ $# -gt 0 ]]; do
+	case "$1" in
+		-r|--reference)
+			reference="$2"
+			shift 2
+			;;
+		-l|--labels)
+			labels="$2"
+			shift 2
+			;;
+		-b|--bams)
+			bams="$2"
+			shift 2
+			;;
+		-f|--filtered_bams)
+			filtered_bams="$2"
+			shift 2
+			;;
+		-s|--steps)
+			steps="$2"
+			shift 2
+			;;
+		-w|--workingdir)
+			workingdir="$2"
+			shift 2
+			;;
+		-o|--output)
+			output_vcf="$2"
+			shift 2
+			;;
+		-a|--assembly)
+			if [[ "$assembly" == "" ]] ; then
+				assembly="$2"
+			else
+				assembly="$assembly $2"
+			fi
+			# TODO: support multiple assembly files
+			shift 2
+			;;
+		-e|--blacklist)
+			blacklist="$2"
+			shift 2
+			;;
+		-j|--jar)
+			GRIDSS_JAR="$2"
+			shift 2
+			;;
+		--jvmheap)
+			jvmheap="$2"
+			shift 2
+			;;
+		--otherjvmheap)
+			otherjvmheap="$2"
+			shift 2
+			;;
+		-t|--threads)
+			printf -v threads '%d\n' "$2" 2>/dev/null
+			printf -v threads '%d' "$2" 2>/dev/null
+			shift 2
+			;;
+		-c|--configuration)
+			config_file=$2
+			shift 2
+			;;
+		*)
+            POSITIONAL_ARGS+=("$1") # save positional arg
+			# echo "Unparsed param"
+			shift
+			;;
+	esac
+done
+
+##### --workingdir
+echo "Using working directory \"$workingdir\"" 1>&2
+if [[ "$workingdir" == "" ]] ; then
+	echo "$USAGE_MESSAGE"  1>&2
+	echo "Working directory must be specified. Specify using the --workingdir command line argument" 1>&2
+	exit $EX_USAGE
+fi
+if [[ "$(tr -d ' 	\n' <<< "$workingdir")" != "$workingdir" ]] ; then
+		echo "workingdir cannot contain whitespace" 1>&2
+		exit $EX_USAGE
+	fi
+if [[ ! -d $workingdir ]] ; then
+	mkdir -p $workingdir
+	if [[ ! -d $workingdir ]] ; then
+		echo Unable to create working directory $workingdir 1>&2
+		exit $EX_CANTCREAT
+	fi
+fi
+workingdir=$(dirname $workingdir/placeholder)
+timestamp=$(date +%Y%m%d_%H%M%S)
+# Logging
+logfile=$workingdir/gridss.full.$timestamp.$HOSTNAME.$$.log
+# $1 is message to write
+write_status() {
+	echo "$(date): $1" | tee -a $logfile 1>&2
+}
+write_status "Full log file is: $logfile"
+trap 'echo "\"${last_command}\" command completed with exit code $?.
+*****
+The underlying error message can be found in $logfile
+*****"' EXIT
+# Timing instrumentation
+timinglogfile=$workingdir/gridss.timing.$timestamp.$HOSTNAME.$$.log
+if which /usr/bin/time >/dev/null ; then
+	timecmd="/usr/bin/time"
+	write_status "Found /usr/bin/time"
+else
+	timecmd=""
+	write_status "Not found /usr/bin/time"
+fi
+if [[ "$timecmd" != "" ]] ; then
+	timecmd="/usr/bin/time --verbose -a -o $timinglogfile"
+	if ! $timecmd echo 2>&1 > /dev/null; then
+		timecmd="/usr/bin/time -a -o $timinglogfile"
+	fi
+	if ! $timecmd echo 2>&1 > /dev/null ; then
+		timecmd=""
+		write_status "Unexpected /usr/bin/time version. Not logging timing information."
+	fi
+	# We don't need timing info of the echo
+	rm -f $timinglogfile
+fi
+
+### Find the jars
+find_jar() {
+	env_name=$1
+	if [[ -f "${!env_name:-}" ]] ; then
+		echo "${!env_name}"
+	else
+		write_status "Unable to find $2 jar. Specify using the environment variant $env_name, or the --jar command line parameter."
+		exit $EX_NOINPUT
+	fi
+}
+gridss_jar=$(find_jar GRIDSS_JAR gridss)
+write_status "Using GRIDSS jar $gridss_jar"
+
+# Check all key inputs:
+
+if [[ "$labels" == "" ]] ; then
+	write_status "Labels must be specified"
+	exit $EX_USAGE
+fi
+
+if [[ "$bams" == "" ]] ; then
+	write_status "Full BAMs must be specified"
+	exit $EX_USAGE
+fi
+
+if [[ "$filtered_bams" == "" ]] ; then
+	write_status "Filtered BAMs must be specified"
+	exit $EX_USAGE
+fi
+
+##### --reference
+if [[ "$reference" == "" ]] ; then
+	write_status "$USAGE_MESSAGE"
+	write_status "Reference genome must be specified. Specify using the --reference command line argument"
+	exit $EX_USAGE
+fi
+
+if [ ! -f $reference ] ; then
+	write_status "$USAGE_MESSAGE"
+	write_status "Missing reference genome $reference. Specify reference location using the --reference command line argument"
+	exit $EX_USAGE
+fi
+write_status "Using reference genome \"$reference\""
+
+##### --output
+if [[ $do_call == "true" ]] ; then
+	if [[ "$output_vcf" == "" ]] ; then
+		write_status "$USAGE_MESSAGE"
+		write_status "Output VCF not specified. Use --output to specify output file."
+		exit $EX_USAGE
+	fi
+	mkdir -p $(dirname $output_vcf)
+	if [[ ! -d $(dirname $output_vcf) ]] ; then
+		write_status "Unable to create directory for $output_vcf for output VCF."
+		exit $EX_CANTCREAT
+	fi
+	write_status "Using output VCF $output_vcf"
+fi
+
+##### --assembly
+if [[ $do_assemble == "true" ]] || [[ $do_call == "true" ]]; then
+	if [[ "$assembly" == "" ]] ; then
+		if [[ "$output_vcf" == "" ]] ; then
+			write_status "Either the assembly output file must explicitly specified with -a, or the output VCF specified with -o"
+			exit $EX_USAGE
+		fi
+		assembly=$output_vcf.assembly.bam
+	fi
+	write_status "Using assembly bam $assembly"
+	if [[ $do_assemble == "true" ]] ; then
+		mkdir -p $(dirname $assembly)
+		if [[ ! -d $(dirname $assembly) ]] ; then
+			write_status "Unable to parent create directory for $assembly"
+			exit $EX_CANTCREAT
+		fi
+	else
+		if [[ ! -f $assembly ]] ; then
+			write_status "Missing assembly file $assembly"
+			write_status "Ensure the GRIDSS assembly step has been run"
+			exit $EX_NOINPUT
+		fi
+	fi
+fi
+
+##### --threads
+if [[ "$threads" -lt 1 ]] ; then
+	write_status "$USAGE_MESSAGE"
+	write_status "Illegal thread count: $threads. Specify an integer thread count using the --threads command line argument"
+	exit $EX_USAGE
+fi
+if [[ "$threads" -gt 8 ]] ; then
+	write_status "WARNING: GRIDSS scales sub-linearly at high thread count. Up to 8 threads is the recommended level of parallelism."
+fi
+write_status  "Using $threads worker threads."
+
+if [[ "$blacklist" == "" ]] ; then
+	blacklist_arg=""
+	write_status  "Using no blacklist bed. The encode DAC blacklist is recommended for hg19."
+elif [[ ! -f $blacklist ]] ; then
+	write_status  "$USAGE_MESSAGE"
+	write_status  "Missing blacklist file $blacklist"
+	exit $EX_NOINPUT
+else
+	blacklist_arg="BLACKLIST=$blacklist"
+	write_status  "Using blacklist $blacklist"
+	if [[ "$(tr -d ' 	\n' <<< "$blacklist_arg")" != "$blacklist_arg" ]] ; then
+		write_status  "blacklist cannot contain whitespace"
+		exit $EX_USAGE
+	fi
+fi
+
+if [[ "$jvmheap" == "" ]] ; then
+	if [[ $threads -gt 8 ]] ; then
+		write_status "Warning: GRIDSS assembly may stall and run out of memory. with $threads and $jvmheap heap size."
+	fi
+fi
+
+write_status  "Using JVM maximum heap size of $jvmheap for assembly and variant calling."
+
+config_args=""
+if [[ "$config_file" != "" ]] ; then
+	if [[ ! -f $config_file ]] ; then
+		write_status "Configuration file $config_file does not exist"
+		exit $EX_NOINPUT
+	fi
+	config_args="CONFIGURATION_FILE=$config_file"
+fi
+
+input_args=""
+input_filtered_args=""
+
+# no longer read in the BAM file list from the end of the arguments list
+
+nows_labels=$(tr -d ' 	\n' <<< "$labels")
+if [[ "$nows_labels" != "$labels" ]] ; then
+	write_status "input labels cannot contain whitespace"
+	exit $EX_USAGE
+fi
+IFS=',' read -ra LABEL_ARRAY  <<< "$nows_labels"
+label_count=${#LABEL_ARRAY[@]}
+
+for label in "${LABEL_ARRAY[@]}" ; do
+	input_args="$input_args INPUT_LABEL=$label"
+	input_filtered_args="$input_filtered_args INPUT_LABEL=$label"
+	#write_status "label is $label"
+done
+
+nows_bams=$(tr -d ' 	\n' <<< "$bams")
+if [[ "$nows_bams" != "$bams" ]] ; then
+	write_status "input filtered BAMs cannot contain whitespace"
+	exit $EX_USAGE
+fi
+IFS=',' read -ra BAM_ARRAY  <<< "$nows_bams"
+for bam_file in "${BAM_ARRAY[@]}" ; do
+
+	if [[ "$(basename $bam_file)" == "$(basename $assembly)" ]] ; then
+		write_status "assembly and input filtered bam files must have different filenames"
+		exit $EX_USAGE
+	fi
+
+	input_args="$input_args INPUT=$bam_file"
+	# write_status "full bam file is $bam_file"
+done
+
+nows_bams=$(tr -d ' 	\n' <<< "$filtered_bams")
+if [[ "$nows_bams" != "$filtered_bams" ]] ; then
+	write_status "input filtered BAMs cannot contain whitespace"
+	exit $EX_USAGE
+fi
+IFS=',' read -ra FILT_BAM_ARRAY  <<< "$nows_bams"
+for filtered_bam_file in "${FILT_BAM_ARRAY[@]}" ; do
+
+	if [[ "$(basename $filtered_bam_file)" == "$(basename $assembly)" ]] ; then
+		write_status "assembly and input filtered bam files must have different filenames"
+		exit $EX_USAGE
+	fi
+
+	input_filtered_args="$input_filtered_args INPUT=$filtered_bam_file"
+	# write_status "filtered bam file is $filtered_bam_file"
+done
+
+for (( i=0; i < $label_count; ++i ))
+do
+    write_status "Label $i: name=${LABEL_ARRAY[$i]} full-bam=${BAM_ARRAY[$i]} filtered-bam=${FILT_BAM_ARRAY[$i]}"
+done
+
+write_status "Full BAM args: $input_args"
+write_status "Filtered BAM args: $input_filtered_args"
+
+
+# Validate tools exist on path
+for tool in Rscript samtools java bwa ; do #minimap2
+	if ! which $tool >/dev/null; then
+		write_status "Error: unable to find $tool on \$PATH"
+		exit $EX_CONFIG
+	fi
+	write_status "Found $(which $tool)"
+done
+if $(samtools --version-only >/dev/null) ; then
+	write_status "samtools version: $(samtools --version-only 2>&1)"
+else
+	write_status "Your samtools version does not support --version-only. Update samtools."
+	exit $EX_CONFIG
+fi
+if [[ "$(samtools --version-only)" =~ ^([0-9]+)[.]([0-9]+) ]] ; then
+	samtools_major_version=${BASH_REMATCH[1]}
+	samtools_minor_version=${BASH_REMATCH[2]}
+	if [[ "$samtools_major_version" -le 1 ]] && [[ "$samtools_minor_version" -lt 10 ]] ; then
+		write_status "samtools 1.13 or later is required."
+		exit $EX_CONFIG
+	fi
+else
+	write_status "Unable to determine samtools version"
+	exit $EX_CONFIG
+fi
+
+# write_status "R version: $(Rscript --version 2>&1)"
+
+write_status "bwa $(bwa 2>&1 | grep Version || echo -n)"
+
+if [[ "$timecmd" != "" ]] ; then
+	if which /usr/bin/time >/dev/null ; then
+		write_status "time version: $(/usr/bin/time --version 2>&1)"
+	fi
+fi
+write_status "bash version: $(/bin/bash --version 2>&1 | head -1)"
+
+# check java version is ok using the gridss.Echo entry point
+if java -cp $gridss_jar gridss.Echo ; then
+	write_status "java version: $(java -version 2>&1 | tr '\n' '\t')"
+else
+	write_status "Unable to run GRIDSS jar - requires java 1.8 or later"
+	write_status "java version: $(java -version  2>&1)"
+	exit $EX_CONFIG
+fi
+
+if ! java -Xms$jvmheap -cp $gridss_jar gridss.Echo ; then
+	write_status "Failure invoking java with --jvmheap parameter of \"$jvmheap\". Specify a JVM heap size (e.g. \"31g\") that is valid for this machine."
+	exit 1
+fi
+
+write_status "Max file handles: $(ulimit -n)" 1>&2
+
+steps_message="Running GRIDSS steps:"
+
+for step in $(echo $steps | tr ',' ' ' ) ; do
+	if [[ "$step" == "all" ]] ; then
+		do_preprocess=true
+		do_assemble=true
+		do_call=true
+		steps_message="$steps_message all"
+	elif [[ "$step" == "preprocess" ]] ; then
+		do_preprocess=true
+		steps_message="$steps_message pre-process"
+	elif [[ "$step" == "assemble" ]] ; then
+		do_assemble=true
+		steps_message="$steps_message assembly"
+	elif [[ "$step" == "call" ]] ; then
+		do_call=true
+		steps_message="$steps_message call"
+	else
+		write_status "Unknown step \"$step\""
+		exit $EX_USAGE
+	fi
+done
+
+write_status "$steps_message"
+
+# don't keep files
+if [[ $keepTempFiles == "true" ]] ; then
+	rmcmd="echo rm disabled:"
+	jvm_args="-Dgridss.keepTempFiles=true"
+else
+	rmcmd="rm"
+	jvm_args=""
+fi
+
+jvm_args="$jvm_args \
+	-XX:ParallelGCThreads=$threads \
+	-Dsamjdk.reference_fasta=$reference \
+	-Dsamjdk.use_async_io_read_samtools=true \
+	-Dsamjdk.use_async_io_write_samtools=true \
+	-Dsamjdk.use_async_io_write_tribble=true \
+	-Dsamjdk.buffer_size=4194304 \
+	-Dsamjdk.async_io_read_threads=$threads"
+
+aligner_args='
+ ALIGNER_COMMAND_LINE=null
+ ALIGNER_COMMAND_LINE=bwa
+ ALIGNER_COMMAND_LINE=mem
+ ALIGNER_COMMAND_LINE=-K
+ ALIGNER_COMMAND_LINE=10000000
+ ALIGNER_COMMAND_LINE=-L
+ ALIGNER_COMMAND_LINE=0,0
+ ALIGNER_COMMAND_LINE=-t
+ ALIGNER_COMMAND_LINE=%3$d
+ ALIGNER_COMMAND_LINE=%2$s
+ ALIGNER_COMMAND_LINE=%1$s'
+
+samtools_sort="samtools sort --no-PG -@ $threads"
+
+readpairing_args="READ_PAIR_CONCORDANT_PERCENT=null"
+
+
+# set-up reference has been removed since can assume to exist
+
+####
+# Pre-process for each filtered BAM file
+####
+
+if [[ $do_preprocess == true ]] ; then
+	write_status "*** PRE-PROCESS ***"
+
+	for (( i=0; i < $label_count; ++i ))
+	do
+		label=${LABEL_ARRAY[$i]}
+		bam_file=${FILT_BAM_ARRAY[$i]}
+	    write_status "Processing: sample ${LABEL_ARRAY[$i]}, filtered-bam ${FILT_BAM_ARRAY[$i]}"
+
+		dir=$workingdir/$(basename $bam_file).gridss.working
+		prefix=$dir/$(basename $bam_file)
+		write_status "Start pre-processing: $bam_file, working dir: $dir, prefix: $prefix"
+
+		tmp_prefix=$workingdir/$(basename $bam_file).gridss.working/tmp.$(basename $bam_file)
+		mkdir -p $dir
+		if [[ ! -d $dir ]] ; then
+			write_status "Unable to create directory $dir"
+			exit $EX_CANTCREAT
+		fi
+
+		name_sorted_bam=$tmp_prefix.namedsorted.bam
+		write_status "Creating name-sorted BAM from $bam_file, writing to $name_sorted_bam"
+
+		$timecmd $samtools_sort -l 1 -n \
+			-T $tmp_prefix.namedsorted-tmp \
+			-Obam \
+			-o ${name_sorted_bam} \
+			${bam_file}
+
+		write_status "Running ComputeSamTags|samtools: $bam_file"
+
+		rm -f $tmp_prefix.coordinate-tmp*
+
+		{ $timecmd java -Xmx$otherjvmheap $jvm_args \
+				-cp $gridss_jar gridss.ComputeSamTags \
+				TMP_DIR=$dir \
+				WORKING_DIR=$workingdir \
+				REFERENCE_SEQUENCE=$reference \
+				COMPRESSION_LEVEL=0 \
+				I=$name_sorted_bam \
+				O=/dev/stdout \
+				WORKER_THREADS=$threads \
+				ASSUME_SORTED=true \
+				REMOVE_TAGS=aa \
+				MODIFICATION_SUMMARY_FILE=$prefix.computesamtags.changes.tsv \
+		| $timecmd $samtools_sort \
+				-l 1 \
+				-T $tmp_prefix.coordinate-tmp \
+				-Obam \
+				-o $tmp_prefix.coordinate.bam \
+				/dev/stdin \
+		; } 1>&2 2>> $logfile
+
+		write_status "Removing name-sorted bam: $tmp_prefix.namedsorted.bam"
+		$rmcmd $tmp_prefix.namedsorted.bam
+
+		write_status "Running SoftClipsToSplitReads: sample $label, input: $tmp_prefix.coordinate.bam, output: $tmp_prefix.sc2sr.primary.sv.bam"
+		rm -f $tmp_prefix.sc2sr.suppsorted.sv-tmp*
+		{ $timecmd java -Xmx$otherjvmheap $jvm_args \
+				-Dsamjdk.create_index=false \
+				-cp $gridss_jar gridss.SoftClipsToSplitReads \
+				TMP_DIR=$workingdir \
+				WORKING_DIR=$workingdir \
+				REFERENCE_SEQUENCE=$reference \
+				I=$tmp_prefix.coordinate.bam \
+				O=$tmp_prefix.sc2sr.primary.sv.bam \
+				COMPRESSION_LEVEL=1 \
+				OUTPUT_UNORDERED_RECORDS=$tmp_prefix.sc2sr.supp.sv.bam \
+				WORKER_THREADS=$threads \
+				$aligner_args \
+		&& $rmcmd $tmp_prefix.coordinate.bam \
+		&& $timecmd $samtools_sort \
+				-l 1 \
+				-T $tmp_prefix.sc2sr.suppsorted.sv-tmp \
+				-Obam \
+				-o $tmp_prefix.sc2sr.suppsorted.sv.bam \
+				$tmp_prefix.sc2sr.supp.sv.bam \
+		&& $rmcmd $tmp_prefix.sc2sr.supp.sv.bam \
+		&& $rmcmd -f $prefix.sv.tmp.bam $prefix.sv.tmp.bam.bai \
+		&& $timecmd samtools merge \
+				-c \
+				-p \
+				--write-index \
+				-@ $threads \
+				$prefix.sv.tmp.bam \
+				$tmp_prefix.sc2sr.primary.sv.bam \
+				$tmp_prefix.sc2sr.suppsorted.sv.bam \
+		&& $rmcmd $tmp_prefix.sc2sr.primary.sv.bam \
+		&& $rmcmd $tmp_prefix.sc2sr.suppsorted.sv.bam \
+		&& mv $prefix.sv.tmp.bam $prefix.sv.bam \
+		&& mv $prefix.sv.tmp.bam.csi $prefix.sv.bam.csi \
+		; } 1>&2 2>> $logfile
+
+		write_status "Produced SV bam:: $prefix.sv.bam"
+
+		# create metrics on the full BAM and then copy these over the metrics made from the filtered BAMs
+		full_bam_file=${BAM_ARRAY[$i]}
+		write_status "Running CollectGridssMetrics on $label full BAM $full_bam_file"
+
+		# test_prefix=$prefix.cp
+
+		{ $timecmd java -Xmx$otherjvmheap $jvm_args \
+				-cp $gridss_jar gridss.analysis.CollectGridssMetrics \
+				REFERENCE_SEQUENCE=$reference \
+				TMP_DIR=$dir \
+				ASSUME_SORTED=true \
+				I=$full_bam_file \
+				O=$prefix \
+				THRESHOLD_COVERAGE=$maxcoverage \
+				FILE_EXTENSION=null \
+				GRIDSS_PROGRAM=null \
+				GRIDSS_PROGRAM=CollectCigarMetrics \
+				GRIDSS_PROGRAM=CollectMapqMetrics \
+				GRIDSS_PROGRAM=CollectTagMetrics \
+				GRIDSS_PROGRAM=CollectIdsvMetrics \
+				PROGRAM=null \
+				PROGRAM=CollectInsertSizeMetrics \
+				STOP_AFTER=$metricsrecords \
+		; } 1>&2 2>> $logfile
+
+		write_status "Complete pre-processing sample: $label"
+	done
+
+	write_status "*** PRE-PROCESS COMPLETE ***"
+fi
+
+#####
+# ASSEMBLY
+####
+
+assembly_args="ASSEMBLY=$assembly"
+
+if [[ $do_assemble == true ]] ; then
+
+	write_status "*** ASSEMBLY ***"
+	write_status "Running AssembleBreakends: writing output to dir $assembly"
+	{ $timecmd java -Xmx$jvmheap $jvm_args \
+			-Dgridss.output_to_temp_file=true \
+			-cp $gridss_jar gridss.AssembleBreakends \
+			JOB_INDEX=0 \
+			JOB_NODES=1 \
+			TMP_DIR=$workingdir \
+			WORKING_DIR=$workingdir \
+			REFERENCE_SEQUENCE=$reference \
+			WORKER_THREADS=$threads \
+			$input_filtered_args \
+			$blacklist_arg \
+			$config_args \
+			$readpairing_args \
+			O=$assembly \
+	; } 1>&2 2>> $logfile
+
+	write_status "AssemblyBreakends complete"
+
+	dir=$workingdir/$(basename $assembly).gridss.working/
+	prefix=$dir/$(basename $assembly)
+	tmp_prefix=$dir/tmp.$(basename $assembly)
+
+	write_status "RunningSoftClipsToSplitReads: running on assembly output dir $assembly"
+	rm -f $tmp_prefix.sc2sr.suppsorted.sv-tmp*
+	{ $timecmd java -Xmx$otherjvmheap $jvm_args \
+			-Dgridss.async.buffersize=16 \
+			-Dsamjdk.create_index=false \
+			-Dgridss.output_to_temp_file=true \
+			-cp $gridss_jar gridss.SoftClipsToSplitReads \
+			TMP_DIR=$dir \
+			WORKING_DIR=$workingdir \
+			REFERENCE_SEQUENCE=$reference \
+			WORKER_THREADS=$threads \
+			I=$assembly \
+			O=$tmp_prefix.sc2sr.primary.sv.bam \
+			OUTPUT_UNORDERED_RECORDS=$tmp_prefix.sc2sr.supp.sv.bam \
+			REALIGN_ENTIRE_READ=true \
+			READJUST_PRIMARY_ALIGNMENT_POSITION=true \
+			$aligner_args \
+	&& $timecmd $samtools_sort \
+			-T $tmp_prefix.sc2sr.suppsorted.sv-tmp \
+			-Obam \
+			-o $tmp_prefix.sc2sr.suppsorted.sv.bam \
+			$tmp_prefix.sc2sr.supp.sv.bam \
+	&& $rmcmd $tmp_prefix.sc2sr.supp.sv.bam \
+	&& $rmcmd -f $prefix.sv.tmp.bam $prefix.sv.tmp.bam.bai \
+	&& $timecmd samtools merge \
+			-c \
+			-p \
+			-@ $threads \
+			$prefix.sv.tmp.bam \
+			$tmp_prefix.sc2sr.primary.sv.bam \
+			$tmp_prefix.sc2sr.suppsorted.sv.bam \
+	&& $timecmd samtools index $prefix.sv.tmp.bam \
+	&& $rmcmd $tmp_prefix.sc2sr.primary.sv.bam \
+	&& $rmcmd $tmp_prefix.sc2sr.suppsorted.sv.bam \
+	&& mv $prefix.sv.tmp.bam $prefix.sv.bam \
+	&& mv $prefix.sv.tmp.bam.bai $prefix.sv.bam.bai \
+	; } 1>&2 2>> $logfile
+
+	write_status "Produced assembly BAM: $prefix.sv.bam"
+
+	write_status "Complete Assembly"
+
+	# no idea why this is a for loop, could just be: ASSEMBLY=$assembly
+	#assembly_args=""
+	#for ass in $assembly ; do
+	#	assembly_args="$assembly_args ASSEMBLY=$ass"
+	#done
+	write_status "Assembly args: $assembly_args"
+
+	write_status "*** ASSEMBLY COMPLETE ***"
+fi
+
+####
+# VARIANT CALLING
+####
+
+if [[ $do_call == true ]] ; then
+	write_status "*** VARIANT CALLING ***"
+
+	write_status "Creating variant VCF: $output_vcf"
+
+	dir=$workingdir/$(basename $output_vcf).gridss.working
+	prefix=$dir/$(basename $output_vcf)
+	mkdir -p $dir
+	if [[ ! -d $dir ]] ; then
+		write_status "Unable to create directory $dir"
+		exit $EX_CANTCREAT
+	fi
+
+	# create symbolic links to the full BAM as though they were produced by the pre-process step
+	# eg: ./gridss_02/COLO829R.bam.gridss.working/COLO829R.bam.sv.bam
+	for (( i=0; i < $label_count; ++i ))
+	do
+		bam_file=${BAM_ARRAY[$i]}
+		bam_dir=$workingdir/$(basename $bam_file).gridss.working
+
+		if [[ ! -d $bam_dir ]] ; then
+			mkdir -p $bam_dir
+		fi
+
+		sv_bam_file=$bam_dir/$(basename $bam_file).sv.bam
+		# write_status "Making soft-link to ${sv_bam_file}"
+		#ln -sfr ${bam_file} ${sv_bam_file}
+		#ln -sfr ${bam_file}.bai ${sv_bam_file}.bai
+	done
+
+	write_status "Running IdentifyVariants"
+	{ $timecmd java -Xmx$jvmheap $jvm_args \
+			-Dgridss.output_to_temp_file=true \
+			-cp $gridss_jar gridss.IdentifyVariants \
+			TMP_DIR=$workingdir \
+			WORKING_DIR=$workingdir \
+			REFERENCE_SEQUENCE=$reference \
+			WORKER_THREADS=$threads \
+			$input_filtered_args \
+			$blacklist_arg \
+			$config_args \
+			$assembly_args \
+			OUTPUT_VCF=$prefix.unallocated.vcf \
+			$readpairing_args \
+	; } 1>&2 2>> $logfile
+	write_status "IdentifyVariants complete, produced $prefix.unallocated.vcf"
+
+	write_status "Running AnnotateVariants"
+	{ $timecmd java -Xmx$jvmheap $jvm_args \
+			-Dgridss.output_to_temp_file=true \
+			-Dgridss.async.buffersize=2048 \
+			-cp $gridss_jar gridss.AnnotateVariants \
+			TMP_DIR=$workingdir \
+			WORKING_DIR=$workingdir \
+			REFERENCE_SEQUENCE=$reference \
+			WORKER_THREADS=$threads \
+			$input_filtered_args \
+			$blacklist_arg \
+			$config_args \
+			$assembly_args \
+			INPUT_VCF=$prefix.unallocated.vcf \
+			OUTPUT_VCF=$prefix.allocated.vcf \
+			$readpairing_args \
+	; } 1>&2 2>> $logfile
+	$rmcmd $prefix.unallocated.vcf
+	write_status "AnnotateVariants complete, produced $prefix.allocated.vcf"
+
+	write_status "Running AnnotateInsertedSequence"
+
+	{ $timecmd java -Xmx$otherjvmheap $jvm_args \
+			-Dgridss.output_to_temp_file=true \
+			-cp $gridss_jar gridss.AnnotateInsertedSequence \
+			TMP_DIR=$workingdir \
+			WORKING_DIR=$workingdir \
+			REFERENCE_SEQUENCE=$reference \
+			WORKER_THREADS=$threads \
+			INPUT=$prefix.allocated.vcf \
+			OUTPUT=$output_vcf \
+	&& $rmcmd $prefix.allocated.vcf \
+	; } 1>&2 2>> $logfile
+	write_status "AnnotateInsertedSequence complete, produced $output_vcf"
+
+	write_status "*** VARIANT CALLING COMPLETE ***"
+fi
+
+if [[ -f $logfile ]] ; then
+	write_status "Run complete with $(grep WARNING $logfile | wc -l) warnings and $(grep ERROR $logfile | wc -l) errors."
+fi
+trap - EXIT
+exit 0 # success!
diff --git a/recipes/hmftools-sv-prep/meta.yaml b/recipes/hmftools-sv-prep/meta.yaml
index c81ed9c3f6a43..9f250f66269fc 100644
--- a/recipes/hmftools-sv-prep/meta.yaml
+++ b/recipes/hmftools-sv-prep/meta.yaml
@@ -1,27 +1,29 @@
-{% set version = "1.1" %}
-{% set sha256 = "e7487a16c609ad4d9f3b2d29ebada02b04fbd3bef3dacd26f228bb1928d5606e" %}
+{% set version = "1.2.4" %}
+{% set sha256 = "c6a49845968802c338cacd3778d3ab1f3eb21be9d7483115fea259db35015c86" %}
 
 package:
   name: hmftools-sv-prep
   version: '{{ version }}'
 
 source:
-  url: 'https://github.com/hartwigmedical/hmftools/releases/download/sv-prep-v{{ version }}/sv-prep_v{{ version }}.jar'
+  url: https://github.com/hartwigmedical/hmftools/releases/download/sv-prep-v{{ version }}/sv-prep_v{{ version }}.jar
   sha256: '{{ sha256 }}'
 
 build:
   noarch: generic
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('hmftools-sv-prep', max_pin="x") }}
 
 requirements:
   run:
     - zlib
     - openjdk >=8
-    - samtools
+    - gridss =2.13.2=h50ea8bc_3
 
 test:
   commands:
-    - 'SvPrep 2>&1 | grep -q "SvPrep version"'
+    - 'svprep -version | grep SvPrep'
 
 about:
   home: https://github.com/hartwigmedical/hmftools/tree/master/sv-prep
diff --git a/recipes/hmftools-sv-prep/SvPrep.sh b/recipes/hmftools-sv-prep/svprep.sh
similarity index 98%
rename from recipes/hmftools-sv-prep/SvPrep.sh
rename to recipes/hmftools-sv-prep/svprep.sh
index 053fdd8f1f5e2..6cd23a12769db 100755
--- a/recipes/hmftools-sv-prep/SvPrep.sh
+++ b/recipes/hmftools-sv-prep/svprep.sh
@@ -60,7 +60,7 @@ if [ "$jvm_mem_opts" == "" ]; then
 fi
 
 pass_arr=($pass_args)
-if [[ ${pass_arr[0]:=} == org* ]]
+if [[ ${pass_arr[0]:=} == com.hartwig.* ]]
 then
     eval "$java" $jvm_mem_opts $jvm_prop_opts -cp "$JAR_DIR/sv-prep.jar" $pass_args
 else
diff --git a/recipes/hmftools-virus-interpreter/build.sh b/recipes/hmftools-virus-interpreter/build.sh
new file mode 100644
index 0000000000000..9016c03d49166
--- /dev/null
+++ b/recipes/hmftools-virus-interpreter/build.sh
@@ -0,0 +1,12 @@
+#!/bin/bash
+
+TGT="$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM"
+[ -d "$TGT" ] || mkdir -p "$TGT"
+[ -d "${PREFIX}/bin" ] || mkdir -p "${PREFIX}/bin"
+
+cd "${SRC_DIR}"
+mv virus-interpreter*.jar $TGT/virusinterpreter.jar
+
+cp $RECIPE_DIR/virusinterpreter.sh $TGT/virusinterpreter
+ln -s $TGT/virusinterpreter $PREFIX/bin
+chmod 0755 "${PREFIX}/bin/virusinterpreter"
diff --git a/recipes/hmftools-virus-interpreter/meta.yaml b/recipes/hmftools-virus-interpreter/meta.yaml
new file mode 100644
index 0000000000000..d667dc1e799d2
--- /dev/null
+++ b/recipes/hmftools-virus-interpreter/meta.yaml
@@ -0,0 +1,30 @@
+{% set version = "1.3" %}
+{% set sha256 = "b2abfcd2526e0de335455fa687fae0bfeda2f9358c53c7aa0a07bb765ea50545" %}
+
+package:
+  name: hmftools-virus-interpreter
+  version: '{{ version }}'
+
+source:
+  url: https://github.com/hartwigmedical/hmftools/releases/download/virus-interpreter-v{{ version }}/virus-interpreter_v{{ version }}.jar
+  sha256: '{{ sha256 }}'
+
+build:
+  noarch: generic
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("hmftools-virus-interpreter", max_pin="x.x") }}
+
+requirements:
+  run:
+    - openjdk >=8
+
+test:
+  commands:
+    - 'virusinterpreter | grep "Virus Interpreter"'
+
+about:
+  home: https://github.com/hartwigmedical/hmftools/blob/master/virus-interpreter/README.md
+  license: GPL-3.0-only
+  license_family: GPL3
+  summary: Post-process VIRUSBreakend summary results.
diff --git a/recipes/hmftools-virus-interpreter/virusinterpreter.sh b/recipes/hmftools-virus-interpreter/virusinterpreter.sh
new file mode 100755
index 0000000000000..7ee6eced678ff
--- /dev/null
+++ b/recipes/hmftools-virus-interpreter/virusinterpreter.sh
@@ -0,0 +1,69 @@
+#!/bin/bash
+# hmftools Virus Interpreter executable shell script
+# https://github.com/hartwigmedical/hmftools/tree/master/virus-interpreter
+set -eu -o pipefail
+
+export LC_ALL=en_US.UTF-8
+
+# Find original directory of bash script, resolving symlinks
+# http://stackoverflow.com/questions/59895/can-a-bash-script-tell-what-directory-its-stored-in/246128#246128
+SOURCE="${BASH_SOURCE[0]}"
+while [ -h "$SOURCE" ]; do # resolve $SOURCE until the file is no longer a symlink
+    DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
+    SOURCE="$(readlink "$SOURCE")"
+    [[ $SOURCE != /* ]] && SOURCE="$DIR/$SOURCE" # if $SOURCE was a relative symlink, we need to resolve it relative to the path where the symlink file was located
+done
+DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
+
+JAR_DIR=$DIR
+ENV_PREFIX="$(dirname $(dirname $DIR))"
+# Use Java installed with Anaconda to ensure correct version
+java="$ENV_PREFIX/bin/java"
+
+# if JAVA_HOME is set (non-empty), use it. Otherwise keep "java"
+if [ -n "${JAVA_HOME:=}" ]; then
+  if [ -e "$JAVA_HOME/bin/java" ]; then
+      java="$JAVA_HOME/bin/java"
+  fi
+fi
+
+# extract memory and system property Java arguments from the list of provided arguments
+# http://java.dzone.com/articles/better-java-shell-script
+default_jvm_mem_opts="-Xms512m -Xmx1g"
+jvm_mem_opts=""
+jvm_prop_opts=""
+pass_args=""
+for arg in "$@"; do
+    case $arg in
+        '-D'*)
+            jvm_prop_opts="$jvm_prop_opts $arg"
+            ;;
+        '-XX'*)
+            jvm_prop_opts="$jvm_prop_opts $arg"
+            ;;
+         '-Xm'*)
+            jvm_mem_opts="$jvm_mem_opts $arg"
+            ;;
+         *)
+	    if [[ ${pass_args} == '' ]] #needed to avoid preceeding space on first arg e.g. ' MarkDuplicates'
+            then
+                pass_args="$arg"
+	    else
+                pass_args="$pass_args \"$arg\"" #quotes later arguments to avoid problem with ()s in MarkDuplicates regex arg
+            fi
+            ;;
+    esac
+done
+
+if [ "$jvm_mem_opts" == "" ]; then
+    jvm_mem_opts="$default_jvm_mem_opts"
+fi
+
+pass_arr=($pass_args)
+if [[ ${pass_arr[0]:=} == org* ]]
+then
+    eval "$java" $jvm_mem_opts $jvm_prop_opts -cp "$JAR_DIR/virusinterpreter.jar" $pass_args
+else
+    eval "$java" $jvm_mem_opts $jvm_prop_opts -jar "$JAR_DIR/virusinterpreter.jar" $pass_args
+fi
+exit
diff --git a/recipes/hmmcopy/build.sh b/recipes/hmmcopy/build.sh
index 221ea7f18365c..2e2b0710805e5 100644
--- a/recipes/hmmcopy/build.sh
+++ b/recipes/hmmcopy/build.sh
@@ -1,4 +1,4 @@
-#!/bin/bash
+#!/usr/bin/env bash
 
 # Source archive contains some macOS junk files,
 # which prevent hoisting the HMMcopy on Linux only.
diff --git a/recipes/hmmcopy/meta.yaml b/recipes/hmmcopy/meta.yaml
index 950876a55c956..bf1639367da71 100644
--- a/recipes/hmmcopy/meta.yaml
+++ b/recipes/hmmcopy/meta.yaml
@@ -7,7 +7,9 @@ source:
   md5: 205a719e7ac9b9f9ba811cdd7cbdae0a
 
 build:
-  number: 9
+  number: 10
+  run_exports:
+    - {{ pin_subpackage("hmmcopy", max_pin="x.x") }}
 
 requirements:
   build:
@@ -31,3 +33,7 @@ about:
   home: http://compbio.bccrc.ca/software/hmmcopy/
   license: GPL-3
   summary: C++ based programs for analyzing BAM files and preparing read counts -- used with bioconductor-hmmcopy
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/hmmer/meta.yaml b/recipes/hmmer/meta.yaml
index 1184ba02f7240..a5b3120a4bd0d 100644
--- a/recipes/hmmer/meta.yaml
+++ b/recipes/hmmer/meta.yaml
@@ -1,13 +1,16 @@
 package:
   name: hmmer
-  version: "3.3.2"
+  version: "3.4"
 
 source:
-  url: http://eddylab.org/software/hmmer/hmmer-3.3.2.tar.gz
-  sha256: 92fee9b5efe37a5276352d3502775e7c46e9f7a0ee45a331eacb2a0cac713c69
+  url: http://eddylab.org/software/hmmer/hmmer-3.4.tar.gz
+  sha256: ca70d94fd0cf271bd7063423aabb116d42de533117343a9b27a65c17ff06fbf3
 
 build:
-  number: 4
+  number: 1
+  run_exports:
+    # commands/options have been removed or replaced between minor versions
+    - {{ pin_subpackage('hmmer', max_pin="x.x") }}
 
 requirements:
   build:
@@ -40,3 +43,7 @@ about:
   home: http://hmmer.org/
   license: BSD
   license_file: LICENSE
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/hmnillumina/meta.yaml b/recipes/hmnillumina/meta.yaml
index 0d3f3982dd163..76d81a34a9fdf 100644
--- a/recipes/hmnillumina/meta.yaml
+++ b/recipes/hmnillumina/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "hmnillumina" %}
-{% set version = "1.5.0" %}
+{% set version = "1.5.1" %}
 
 package:
   name: {{ name|lower }}
@@ -7,19 +7,18 @@ package:
 
 source:
   url: https://github.com/guillaume-gricourt/HmnIllumina/archive/{{ version }}.tar.gz
-  sha256: dc26d4f685dabc74726819b7faf9208bed6544a0973a343bfb2d237103551aa4
+  sha256: 4ef0913c0f2fe681f2a42102649263c6516dff980dcda6b0af7eee898c49b1ab
 
 build:
-  number: 1
+  number: 0
   skip: true  # [osx]
+  run_exports:
+    - {{ pin_subpackage('hmnillumina', max_pin="x") }}
 
 requirements:
   build:
     - make
     - {{ compiler('cxx') }}
-    - illumina-interop
-    - rapidjson
-    - zlib
   host:
     - illumina-interop
     - rapidjson
@@ -29,7 +28,6 @@ requirements:
     - pytest
     - illumina-interop
     - rapidjson
-    - zlib
 
 test:
   source_files:
@@ -44,6 +42,7 @@ about:
   summary: A parser for Illumina run
   description: 'HmnIllumina: parsing Illumina InterOp folder to keep useful information'
   license: MIT
+  license_family: MIT
   license_file: LICENSE
 
 extra:
diff --git a/recipes/homer/meta.yaml b/recipes/homer/meta.yaml
index a02b6c48e4c32..78bc32e2c14c1 100644
--- a/recipes/homer/meta.yaml
+++ b/recipes/homer/meta.yaml
@@ -16,10 +16,11 @@ source:
       - configureHomer.patch
 
 build:
-  number: 8
+  number: 9
   # Ships pre-built binaries that install_name_tool isn't able to fix.
   skip: True  # [osx]
-
+  run_exports:
+    - {{ pin_subpackage('homer', max_pin="x") }}
 
 # Dependencies according to http://homer.ucsd.edu/homer/introduction/install.html
 requirements:
@@ -52,3 +53,6 @@ about:
   summary: 'Software for motif discovery and next generation sequencing analysis'
   maintainer: BioNinja, cokelaer, simonvh, r78v10a07
 
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/hostile/meta.yaml b/recipes/hostile/meta.yaml
index 99f6769d0abb6..59824376f57ac 100644
--- a/recipes/hostile/meta.yaml
+++ b/recipes/hostile/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.1.0" %}
+{% set version = "1.1.0" %}
 
 package:
   name: hostile
@@ -6,11 +6,13 @@ package:
 
 source:
   url: https://pypi.io/packages/source/h/hostile/hostile-{{ version }}.tar.gz
-  sha256: 8fe1471c9aca5143a78162bb846b099a73071a74d37c133377a7eeba45494354
+  sha256: eee390f97ac9f669f10792a3fb487d92b9cec518c0b072338b3654a162965e2e
 
 build:
   noarch: python
   number: 0
+  run_exports:
+    - {{ pin_subpackage('hostile', max_pin="x.x") }}
   entry_points:
     - hostile = hostile.cli:main
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
@@ -21,8 +23,9 @@ requirements:
     - python >=3.10
     - flit-core >=3.9.0
   run:
-    - bowtie2 >=2.5.1
+    - bowtie2 ==2.4.5
     - defopt >=6.4.0
+    - dnaio >=1.2.0
     - gawk >=5.1.0
     - httpx >=0.24.1
     - minimap2 >=2.26
@@ -48,4 +51,4 @@ about:
 
 extra:
   identifiers:
-    - doi:10.1101/2023.07.04.547735
+    - doi:10.1093/bioinformatics/btad728
diff --git a/recipes/hpcblast/meta.yaml b/recipes/hpcblast/meta.yaml
new file mode 100644
index 0000000000000..0596424abf221
--- /dev/null
+++ b/recipes/hpcblast/meta.yaml
@@ -0,0 +1,42 @@
+{% set version = "1.0.2" %}
+
+package:
+    name: hpcblast
+    version: {{ version }}
+
+build:
+    number: 0
+    noarch: python
+    script: {{ PYTHON }} -m pip install -vvv .
+    entry_points:
+      - hpc-blast = hpcblast.main:main
+    run_exports:
+      - {{ pin_subpackage('hpcblast', max_pin="x") }}
+
+source:
+    url: https://github.com/yodeng/hpc-blast/archive/v{{ version }}.tar.gz
+    sha256: 71f3fa343dc553fa447af26474e90204843abe395a98ff27cf88f0cb3ba9ca21
+
+requirements:
+    host:
+      - python >=3.5
+      - pip
+    run:
+      - python >=3.5
+      - pip
+      - runjob >=2.10.5
+      - blast
+
+test:
+  imports:
+    - hpcblast
+  commands:
+    - hpc-blast --version
+
+about:
+    home: https://github.com/yodeng/hpc-blast
+    license: MIT
+    license_family: MIT
+    license_file: LICENSE
+    summary: "A wrapper for NCBI-BLAST+ suite which provides a simple and efficient method to accelerate the blast search"
+    description: "hpcblast provides a simple and efficient method for running the NCBI-BLAST+ suite program in localhost or the HPC environment (Sun Grid Engine). It splits the input sequence file and run all chunked tasks in parallel to accelerate the blast search speed. When there are many sequences in the input file for blast comparison and the running speed is slow, using hpcblast can significantly improve the performance. All of this can be easy done only by adding the hpc-blast command at the head of your blast command line."
diff --git a/recipes/htseq/meta.yaml b/recipes/htseq/meta.yaml
index 7cf49211da43e..712c394b285fb 100644
--- a/recipes/htseq/meta.yaml
+++ b/recipes/htseq/meta.yaml
@@ -1,17 +1,20 @@
-{% set version = '2.0.3' %}
+{% set name = "HTSeq" %}
+{% set version = "2.0.5" %}
+{% set sha256 = "2519675246dd1639115a76c9aacf19ab5bc5bed2f3598bf89cd97be5c0d066b3" %}
 
 package:
-  name: htseq
+  name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://files.pythonhosted.org/packages/83/61/05ce20ed21cedf9c31a0bc20cdffb66012e6ac202609ea1207322895c301/HTSeq-{{ version }}.tar.gz
-  sha256: c7e7eb29bdc44e80d2d68e3599fa8a8f1d9d6475624dcf1b9644285a8a9c0fac
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
 
 build:
   number: 1
-  skip: True  # [py2k or py == 36]
-  script: "{{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv"
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  run_exports:
+    - {{ pin_subpackage('htseq', max_pin="x") }}
 
 requirements:
   build:
@@ -23,6 +26,7 @@ requirements:
     - pip
     - cython
     - numpy
+    - wheel
     - pysam >=0.15.1
     - swig >=3.0.8
   run:
@@ -30,6 +34,8 @@ requirements:
     - {{ pin_compatible('numpy') }}
     - matplotlib-base >=1.4
     - pysam >=0.15.1
+    - scipy >=1.5.0
+    - pandas >=1.1.0
 
 test:
   # Python imports
@@ -51,6 +57,8 @@ about:
   summary: 'HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.'
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:htseq
     - usegalaxy-eu:htseq_count
diff --git a/recipes/htsinfer/meta.yaml b/recipes/htsinfer/meta.yaml
new file mode 100644
index 0000000000000..b853db128b352
--- /dev/null
+++ b/recipes/htsinfer/meta.yaml
@@ -0,0 +1,57 @@
+{% set name = "HTSinfer" %}
+{% set version = "0.11.0" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://github.com/zavolanlab/htsinfer/archive/refs/tags/v0.11.0.tar.gz
+  sha256: f7225290e12bf129bdb654f06f1cb98da577be81d35f7d17844447fcdf058618
+
+build:
+  number: 1
+  noarch: python
+  entry_points:
+    - htsinfer = htsinfer.cli:main
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x.x") }}
+
+requirements:  
+  host:
+    - python >=3.8, <=3.10
+    - pip >=20.2.3
+    - setuptools-git >=1.2
+    - numpy >=1.22, <1.25
+    - pandas >=1.3.5, <1.4.0
+    - biopython >=1.78
+    - pydantic >=2, <3
+    - pysam >=0.16.0
+    - pyahocorasick >=1.4.0
+  run:
+    - biopython >=1.78
+    - cutadapt >=3.5, <=4.2
+    - kallisto >=0.46.1, <= 0.48.0
+    - numpy >=1.22, <1.25
+    - pandas >=1.3.5, <1.4.0
+    - pyahocorasick >=1.4.0
+    - pydantic >=2, <3
+    - pysam >=0.16.0
+    - python >=3.8, <=3.10
+    - star >=2.7.6
+
+test:
+  commands:
+    - htsinfer --version
+
+about:
+  home: https://github.com/zavolanlab/htsinfer
+  license: Apache-2.0
+  license_family: APACHE
+  license_file: LICENSE
+  summary: HTSinfer infers metadata from Illumina high throughput sequencing (HTS) data
+
+extra:
+  recipe-maintainers:
+    - balajtimate
diff --git a/recipes/htslib/arm_hwcap.patch b/recipes/htslib/arm_hwcap.patch
new file mode 100644
index 0000000000000..40733dcc33b1d
--- /dev/null
+++ b/recipes/htslib/arm_hwcap.patch
@@ -0,0 +1,15 @@
+Conda-forge's build environment on ARM uses sysroot_linux-aarch64 2.17, which
+is based on glibc 2.17 so <sys/auxv.h> does not define HWCAP_* values on ARM.
+Work around this by including the kernel header to get the desired values.
+
+--- a/htscodecs/htscodecs/rANS_static4x16pr.c	2023-10-10 02:54:16
++++ b/htscodecs/htscodecs/rANS_static4x16pr.c	2024-03-06 00:01:14
+@@ -1030,6 +1030,8 @@
+ 
+ #if defined(__linux__) || defined(__FreeBSD__)
+ #include <sys/auxv.h>
++// Ensure ARM HWCAP_* values are defined even on old glibc
++#include <asm/hwcap.h>
+ #elif defined(_WIN32)
+ #include <processthreadsapi.h>
+ #endif
diff --git a/recipes/htslib/meta.yaml b/recipes/htslib/meta.yaml
index 3890a36b3c80d..0ed226673ba88 100644
--- a/recipes/htslib/meta.yaml
+++ b/recipes/htslib/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.18" %}
+{% set version = "1.20" %}
 
 package:
   name: htslib
@@ -11,7 +11,9 @@ build:
 
 source:
   url: https://github.com/samtools/htslib/releases/download/{{ version }}/htslib-{{ version }}.tar.bz2
-  sha256: f1ab53a593a2320a1bfadf4ef915dae784006c5b5c922c8a8174d7530a9af18f
+  sha256: e52d95b14da68e0cfd7d27faf56fef2f88c2eaf32a2be51c72e146e3aa928544
+  patches:
+    - arm_hwcap.patch
 
 requirements:
   build:
@@ -24,13 +26,6 @@ requirements:
     - zlib
     - libdeflate
     - openssl  # [not osx]
-  run:
-    - libcurl
-    - bzip2
-    - xz
-    - zlib
-    - libdeflate
-    - openssl  # [not osx]
 
 test:
   files:
@@ -47,9 +42,14 @@ test:
 about:
   home: https://github.com/samtools/htslib
   license: MIT
+  license_family: MIT
+  license_file: LICENSE
   summary: C library for high-throughput sequencing data formats.
+  doc_url: http://www.htslib.org/
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:HTSlib
   skip-lints:
diff --git a/recipes/humann/meta.yaml b/recipes/humann/meta.yaml
index 975558683c39e..f9377f272b547 100644
--- a/recipes/humann/meta.yaml
+++ b/recipes/humann/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "humann" %}
-{% set version = "3.7" %}
+{% set version = "3.8" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,10 +7,10 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 78ae8b1d3105f3f7447d14b1021bc5daba1b6e670068d97235dede3a46d745f3
+  sha256: 67586cbf4c31d434cae79b3f6c03d01b10fcdc9abe032e273837921a96992946
 
 build:
-  number: 1
+  number: 0
   noarch: python
   entry_points:
     - humann = humann.humann:main
diff --git a/recipes/humid/meta.yaml b/recipes/humid/meta.yaml
index bbc1e7ba47dc4..77f3ae3e1d436 100644
--- a/recipes/humid/meta.yaml
+++ b/recipes/humid/meta.yaml
@@ -1,4 +1,4 @@
-{% set version="1.0.2" %}
+{% set version = "1.0.4" %}
 
 package:
   name: humid
@@ -6,10 +6,12 @@ package:
 
 source:
   url: https://github.com/jfjlaros/HUMID/releases/download/v{{ version }}/humid-v{{ version }}.tar.gz
-  sha256: 3e35f663884cb47b089740629a61537e56536479c0c9b560819e599fd047d34e
+  sha256: 5da8a2a95514304b7a32a6525bb6047bae16b96e56a9737a57a745470eac7733
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('humid', max_pin="x") }}
 
 requirements:
   build:
@@ -17,7 +19,6 @@ requirements:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
     - isa-l
-    - libdeflate
   host:
     - isa-l
     - libdeflate
@@ -32,4 +33,6 @@ test:
 about:
   home: https://github.com/jfjlaros/HUMID
   license: MIT
+  license_family: MIT
   summary: HUMID -- High-performance UMI Deduplicator
+  doc_url: https://humid.readthedocs.io/en/latest/usage.html
diff --git a/recipes/hybkit/meta.yaml b/recipes/hybkit/meta.yaml
index 14b3b22316d02..e350da1a32f29 100644
--- a/recipes/hybkit/meta.yaml
+++ b/recipes/hybkit/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "hybkit" %}
-{% set version = "0.3.0" %}
+{% set version = "0.3.4" %}
 
 package:
   name: {{ name|lower }}
@@ -7,11 +7,13 @@ package:
 
 source:
   url: https://github.com/RenneLab/hybkit/archive/v{{ version }}.tar.gz
-  sha256: ddbf4b35f819939fa167063bda91f85c7e05a561c32b533775345b11891be208
+  sha256: 6f42b1e116dd668b5fd2847691bc6b78cf641f9c1aae91ca752e6df6d18022cd
 
 build:
   noarch: python
-  script: {{ PYTHON }} -m pip install . -vv
+  script: {{ PYTHON }} -m pip install . --no-build-isolation --no-deps -vvv
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
   number: 0
 
 requirements:
@@ -20,10 +22,12 @@ requirements:
     - pip
     - matplotlib-base
     - biopython
+    - typing_extensions
   run:
     - python >=3.8
     - matplotlib-base
     - biopython
+    - typing_extensions
 
 test:
   imports:
@@ -42,7 +46,8 @@ test:
 
 about:
   home: https://github.com/RenneLab/hybkit
-  license: GPL-3.0
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
   summary: Hybkit toolkit and Python3 API chimeric genomic data analysis from proximity ligation methods. 
 
diff --git a/recipes/hybpiper/build.sh b/recipes/hybpiper/build.sh
deleted file mode 100644
index 9354bfd059e95..0000000000000
--- a/recipes/hybpiper/build.sh
+++ /dev/null
@@ -1,3 +0,0 @@
-# Install HybPiper
-$PYTHON -m pip install --no-deps --ignore-installed .
-
diff --git a/recipes/hybpiper/build_failure.osx-64.yaml b/recipes/hybpiper/build_failure.osx-64.yaml
deleted file mode 100644
index 49cc73ed6a35e..0000000000000
--- a/recipes/hybpiper/build_failure.osx-64.yaml
+++ /dev/null
@@ -1,104 +0,0 @@
-recipe_sha: 35ef1b5ef27a3fde696e04cc087c0ade7814653834908273028c6dee9080552e  # The commit at which this recipe failed to build.
-skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
-log: |2-
-      ld64_osx-64:        609-h8ce0179_13           conda-forge
-      libclang-cpp15:     15.0.7-default_hdb78580_2 conda-forge
-      libcxx:             16.0.4-hd57cbcb_0         conda-forge
-      libexpat:           2.5.0-hf0c8a7f_1          conda-forge
-      libffi:             3.4.2-h0d85af4_5          conda-forge
-      libiconv:           1.17-hac89ed1_0           conda-forge
-      libllvm15:          15.0.7-he4b1e75_2         conda-forge
-      libsqlite:          3.42.0-h58db7d2_0         conda-forge
-      libxml2:            2.11.4-hd95e348_0         conda-forge
-      libzlib:            1.2.13-hfd90126_4         conda-forge
-      llvm-tools:         15.0.7-he4b1e75_2         conda-forge
-      ncurses:            6.3-h96cf925_1            conda-forge
-      openssl:            3.1.1-h8a1eda9_1          conda-forge
-      python:             3.11.3-h99528f9_0_cpython conda-forge
-      readline:           8.2-h9e318b2_1            conda-forge
-      setuptools:         67.7.2-pyhd8ed1ab_0       conda-forge
-      sigtool:            0.1.3-h88f4db0_0          conda-forge
-      tapi:               1100.0.11-h9ce4665_0      conda-forge
-      tk:                 8.6.12-h5dbffcc_0         conda-forge
-      tzdata:             2023c-h71feb2d_0          conda-forge
-      xz:                 5.2.6-h775f41a_0          conda-forge
-      zstd:               1.5.2-hbc0c0cd_6          conda-forge
-
-  Preparing transaction: ...working... done
-  Verifying transaction: ...working... done
-  Executing transaction: ...working... done
-  Source cache directory is: /opt/mambaforge/envs/bioconda/conda-bld/src_cache
-  INFO:conda_build.source:Source cache directory is: /opt/mambaforge/envs/bioconda/conda-bld/src_cache
-  INFO:conda_build.source:Downloading source to cache: v2.1.3_677d046ceb.tar.gz
-  INFO:conda_build.source:Downloading https://github.com/mossmatters/HybPiper/archive/refs/tags/v2.1.3.tar.gz
-  Downloading source to cache: v2.1.3_677d046ceb.tar.gz
-  Downloading https://github.com/mossmatters/HybPiper/archive/refs/tags/v2.1.3.tar.gz
-  Success
-  INFO:conda_build.source:Success
-  Extracting download
-  source tree in: /opt/mambaforge/envs/bioconda/conda-bld/hybpiper_1685527655123/work
-  export PREFIX=/opt/mambaforge/envs/bioconda/conda-bld/hybpiper_1685527655123/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place
-  export BUILD_PREFIX=/opt/mambaforge/envs/bioconda/conda-bld/hybpiper_1685527655123/_build_env
-  export SRC_DIR=/opt/mambaforge/envs/bioconda/conda-bld/hybpiper_1685527655123/work
-  INFO: activate_clang_osx-64.sh made the following environmental changes:
-  AR=x86_64-apple-darwin13.4.0-ar
-  AS=x86_64-apple-darwin13.4.0-as
-  CC=x86_64-apple-darwin13.4.0-clang
-  CC_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang
-  CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/hybpiper-2.1.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
-  CHECKSYMS=x86_64-apple-darwin13.4.0-checksyms
-  CLANG=x86_64-apple-darwin13.4.0-clang
-  CMAKE_ARGS=-DCMAKE_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_CXX_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_C_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_CXX_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_C_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_LINKER=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ld -DCMAKE_STRIP=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-strip -DCMAKE_INSTALL_NAME_TOOL=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-install_name_tool -DCMAKE_LIBTOOL=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-libtool -DCMAKE_OSX_DEPLOYMENT_TARGET=10.9 -DCMAKE_BUILD_TYPE=Release -DCMAKE_OSX_SYSROOT=/Applications/Xcode_14.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_FIND_APPBUNDLE=LAST -DCMAKE_INSTALL_PREFIX=$PREFIX -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_PROGRAM_PATH=$BUILD_PREFIX/bin;$PREFIX/bin
-  CMAKE_PREFIX_PATH=:$PREFIX
-  CONDA_TOOLCHAIN_BUILD=x86_64-apple-darwin13.4.0
-  CONDA_TOOLCHAIN_HOST=x86_64-apple-darwin13.4.0
-  CPPFLAGS=-D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.9
-  DEBUG_CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -Og -g -Wall -Wextra -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/hybpiper-2.1.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
-  HOST=x86_64-apple-darwin13.4.0
-  INSTALL_NAME_TOOL=x86_64-apple-darwin13.4.0-install_name_tool
-  LD=x86_64-apple-darwin13.4.0-ld
-  LDFLAGS=-Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,$PREFIX/lib -L$PREFIX/lib
-  LDFLAGS_LD=-pie -headerpad_max_install_names -dead_strip_dylibs -rpath $PREFIX/lib -L$PREFIX/lib
-  LIBTOOL=x86_64-apple-darwin13.4.0-libtool
-  LIPO=x86_64-apple-darwin13.4.0-lipo
-  MESON_ARGS=--buildtype release --prefix=$PREFIX -Dlibdir=lib
-  NM=x86_64-apple-darwin13.4.0-nm
-  NMEDIT=x86_64-apple-darwin13.4.0-nmedit
-  OBJC=x86_64-apple-darwin13.4.0-clang
-  OBJC_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang
-  OTOOL=x86_64-apple-darwin13.4.0-otool
-  PAGESTUFF=x86_64-apple-darwin13.4.0-pagestuff
-  RANLIB=x86_64-apple-darwin13.4.0-ranlib
-  REDO_PREBINDING=x86_64-apple-darwin13.4.0-redo_prebinding
-  SDKROOT=/Applications/Xcode_14.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk
-  SEGEDIT=x86_64-apple-darwin13.4.0-segedit
-  SEG_ADDR_TABLE=x86_64-apple-darwin13.4.0-seg_addr_table
-  SEG_HACK=x86_64-apple-darwin13.4.0-seg_hack
-  SIZE=x86_64-apple-darwin13.4.0-size
-  STRINGS=x86_64-apple-darwin13.4.0-strings
-  STRIP=x86_64-apple-darwin13.4.0-strip
-  _CONDA_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_apple_darwin13_4_0
-  ac_cv_func_malloc_0_nonnull=yes
-  ac_cv_func_realloc_0_nonnull=yes
-  build_alias=x86_64-apple-darwin13.4.0
-  host_alias=x86_64-apple-darwin13.4.0
-  /opt/mambaforge/envs/bioconda/conda-bld/hybpiper_1685527655123/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/bin/python: No module named pip
-  Traceback (most recent call last):
-    File "/opt/mambaforge/envs/bioconda/bin/conda-mambabuild", line 10, in <module>
-      sys.exit(main())
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
-      call_conda_build(action, config)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
-      result = api.build(
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
-      return build_tree(
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
-      packages_from_this = build(metadata, stats,
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
-      utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
-      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
-      raise subprocess.CalledProcessError(proc.returncode, _args)
-  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/mambaforge/envs/bioconda/conda-bld/hybpiper_1685527655123/work/conda_build.sh']' returned non-zero exit status 1.
-# Last 100 lines of the build log.
diff --git a/recipes/hybpiper/meta.yaml b/recipes/hybpiper/meta.yaml
index af8c4ee099aa5..6c54f977823e5 100644
--- a/recipes/hybpiper/meta.yaml
+++ b/recipes/hybpiper/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "hybpiper" %}
-{% set version = "2.1.6" %}
+{% set version = "2.1.7" %}
 
 package:
   name: {{ name|lower }}
@@ -7,18 +7,21 @@ package:
 
 source:
   url: "https://github.com/mossmatters/HybPiper/archive/refs/tags/v{{ version }}.tar.gz"
-  sha256: ac175b2b02cd9fcc1d195a4edd68dd1e004c6d2e2bb5658f4cce9b2a4339b4c9
+  sha256: 5532767bb92a524f97ef05808cba39090e034ab3e1d48c5307ed812d3909b018
 
 build:
   number: 0
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation --no-cache-dir
+  entry_points:
+    - hybpiper = hybpiper.assemble:main
+  run_exports:
+    - {{ pin_subpackage('hybpiper', max_pin="x") }}
 
 requirements:
-  build:
-    - {{ compiler('c') }}
-    - setuptools
   host:
-    - python >=3.7.0 # [linux]
-    - python >=3.7.0,<3.10 # [osx]
+    - python >=3.7
+    - pip
   run:
     - bbmap >=38.44
     - biopython >=1.80
@@ -34,9 +37,9 @@ requirements:
     - progressbar2 >=3.38.0
     - psutil >=5.9.0
     - samtools >=1.14
-    - seaborn >=0.11.1
-    - spades >=3.15.2 # [osx]
-    - spades >=3.15.4 # [linux]
+    - seaborn-base >=0.11.1
+    - spades >=3.15.2  # [osx]
+    - spades >=3.15.4  # [linux]
     - trimmomatic
 
 test:
@@ -55,10 +58,10 @@ test:
     - hybpiper.fix_targetfile
 
 about:
-    home: "https://github.com/mossmatters/HybPiper"
-    license: GPL-3.0-or-later
-    license_family: GPL
-    license_file: LICENSE.txt
-    summary: >
-      HybPiper is a suite of Python scripts/modules for targeted sequence
-      capture
+  home: "https://github.com/mossmatters/HybPiper"
+  dev_url: "https://github.com/mossmatters/HybPiper"
+  doc_url: "https://github.com/mossmatters/HybPiper/wiki"
+  license: "GPL-3.0-or-later"
+  license_family: GPL3
+  license_file: "LICENSE.txt"
+  summary: "HybPiper is a suite of Python scripts/modules for targeted sequence capture."
diff --git a/recipes/hybracter/meta.yaml b/recipes/hybracter/meta.yaml
new file mode 100644
index 0000000000000..15305a69002fc
--- /dev/null
+++ b/recipes/hybracter/meta.yaml
@@ -0,0 +1,49 @@
+{% set name = "hybracter" %}
+{% set version = "0.7.3" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/hybracter-{{ version }}.tar.gz
+  sha256: 01ee53bb84c37ba2a4c37431dd34ada4383cf29aab4127acb3131ab1be58adac
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - hybracter=hybracter.__main__:main
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  run_exports:
+    - {{ pin_subpackage('hybracter', max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.9
+    - pip
+  run:
+    - python >=3.9
+    - snakemake-minimal >=7.14.0
+    - pyyaml >=6.0
+    - click >=8.1.3
+    - attrmap >=0.0.5
+    - biopython >=1.76
+
+test:
+  imports:
+    - hybracter
+  commands:
+    - hybracter --help
+
+about:
+  home: https://github.com/gbouras13/hybracter
+  summary: An automated long-read first bacterial genome assembly pipeline.
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  doc_url: https://hybracter.readthedocs.io/en/latest/
+
+extra:
+  recipe-maintainers:
+    - gbouras13
diff --git a/recipes/hybran/meta.yaml b/recipes/hybran/meta.yaml
index 5b4b6abd05446..4d343203276db 100644
--- a/recipes/hybran/meta.yaml
+++ b/recipes/hybran/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.7.1" %}
+{% set version = "1.8" %}
 
 package:
   name: hybran
@@ -6,12 +6,14 @@ package:
 
 source:
   url: https://gitlab.com/LPCDRP/hybran/-/archive/{{ version }}/hybran-{{ version }}.tar.gz
-  sha256: 'c256e88009d0a2cc3fffcb021613392f6a71ee6905bfe1a1d806b962b5243017'
+  sha256: 'cd46ec155109e59ddadf6942a54edcd9c350c6571ae81524eab44d4b695cbbdb'
 
 build:
   noarch: python
   number: 0
   script: python -m pip install --no-deps --ignore-installed .
+  run_exports:
+    - {{ pin_subpackage('hybran', max_pin=None) }}
 
 requirements:
   host:
@@ -26,8 +28,10 @@ requirements:
     - eggnog-mapper
     - emboss
     - entrez-direct
+    - intervaltree
     - mcl
     - multiprocess
+    - networkx
     - prokka >=1.14
     - python >=3.9
     - ratt
@@ -42,4 +46,4 @@ about:
   dev_url: https://gitlab.com/LPCDRP/hybran
   license: GPLv3
   license_file: LICENSE
-  summary: Hybrid reference transfer and ab initio prokaryotic genome annotation
+  summary: Comparative prokaryotic genome annotation
diff --git a/recipes/hyphy/build.sh b/recipes/hyphy/build.sh
index 133335196642c..50ac0f9bd45ef 100644
--- a/recipes/hyphy/build.sh
+++ b/recipes/hyphy/build.sh
@@ -1,3 +1,14 @@
-cmake -DCMAKE_INSTALL_PREFIX=$PREFIX -DNOAVX=ON .
+#!/usr/bin/env bash
+
+case $(uname -m) in
+    aarch64) 
+        HYPHY_OPTS=""
+        ;;
+    *)
+        HYPHY_OPTS="-DNOAVX=ON"
+        ;;
+esac
+
+cmake -DCMAKE_INSTALL_PREFIX=$PREFIX ${HYPHY_OPTS} .
 make hyphy HYPHYMPI
 make install
diff --git a/recipes/hyphy/meta.yaml b/recipes/hyphy/meta.yaml
index 36c09881912f9..7254df9b46e02 100644
--- a/recipes/hyphy/meta.yaml
+++ b/recipes/hyphy/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "2.5.50" %}
-{% set sha256 = "c7597db75275cf017a64719d3134c5a0dca38e04c2e70b9d518f49bbb5f83032" %}
+{% set version = "2.5.61" %}
+{% set sha256 = "5a470ad64e9ea53296d87e69298ab2354d563338a9ec05b529679c42e23b3025" %}
 
 package:
   name: hyphy
@@ -10,8 +10,9 @@ source:
   sha256: '{{ sha256 }}'
 
 build:
-  number: 2
-
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("hyphy", max_pin="x.x") }}
 requirements:
   build:
     - make
@@ -44,5 +45,7 @@ about:
   dev_url: https://github.com/veg/hyphy
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   container:
     extended-base: true
diff --git a/recipes/ice-cream/build.sh b/recipes/ice-cream/build.sh
new file mode 100644
index 0000000000000..7208215fdc2f0
--- /dev/null
+++ b/recipes/ice-cream/build.sh
@@ -0,0 +1,19 @@
+#!/bin/bash
+set -eu -o pipefail
+
+outdir=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
+
+mkdir -p $outdir
+mkdir -p $PREFIX/bin
+
+cp -r ICEfamily_refer $outdir/ICEfamily_refer
+cp -r data $outdir/data
+cp -r scripts $outdir/scripts
+cp ICEfinder_modified4_yxl.pl $outdir/ICEfinder_modified4_yxl.pl
+cp ICEcream.sh $outdir/ICEcream.sh
+
+chmod 0755 $outdir/ICEfamily_refer/familytools/plotting_script.py
+chmod 0755 $outdir/ICEcream.sh
+
+ln -s $outdir/ICEfamily_refer/familytools/plotting_script.py $PREFIX/bin
+ln -s $outdir/ICEcream.sh $PREFIX/bin
diff --git a/recipes/ice-cream/meta.yaml b/recipes/ice-cream/meta.yaml
new file mode 100644
index 0000000000000..cf9c11a867fa4
--- /dev/null
+++ b/recipes/ice-cream/meta.yaml
@@ -0,0 +1,43 @@
+{% set name = "ice-cream" %}
+{% set version = "1.10" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: '{{ version }}'
+
+source:
+  url: https://github.com/xinehc/ICEcream/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 47b6ce064775e918a1aef48d87eeda5de4ab3ffdd19614f863cedec645c98939
+
+build:
+  noarch: generic
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('ice-cream', max_pin='x') }}
+
+requirements:
+  run:
+    - python >=3.6
+    - perl >=5.26
+    - prokka
+    - biopython
+    - aragorn
+    - hmmer
+    - vmatch
+    - blast
+    - prodigal
+    - pandas
+    - r-base >=4.2
+    - r-reshape2 
+    - dna_features_viewer
+
+test:
+  commands:
+    - plotting_script.py --help
+    - ICEcream.sh --help
+
+about:
+  home: https://github.com/xinehc/ICEcream
+  license: MIT
+  license_family: MIT
+  summary: 'ICEcream: Integrative and Conjugative Elements Classification and gRaphical gEne Arrangement Method'
diff --git a/recipes/icescreen/meta.yaml b/recipes/icescreen/meta.yaml
index aac6a83ed3f11..09c46a851ab4f 100644
--- a/recipes/icescreen/meta.yaml
+++ b/recipes/icescreen/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "ICEscreen" %}
-{% set version = "1.2.0" %}
+{% set version = "1.3.2" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,11 +7,13 @@ package:
 
 source:
   url: https://forgemia.inra.fr/ices_imes_analysis/icescreen/-/archive/v{{ version }}/icescreen-v{{ version }}.tar.gz
-  sha256: 21b163a5dc0f6a745d97aa6185aa94ccc4ecfe14553cc75ed71429ee1da9c122
+  sha256: f8d691891bd92e2dc4a72b14a5404645d26f30d3fbe09d407b45c548d37f2ca3
 
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('icescreen', max_pin="x") }}
 
 requirements:
   host:
@@ -20,12 +22,12 @@ requirements:
     - hmmer =3.3.2
   run:
     - python
-    - pandas >=2.0.0
-    - snakemake-minimal >=7.25.0
-    - biopython >=1.81
-    - bcbio-gff >=0.7.0
-    - blast =2.12
-    - hmmer =3.3.2
+    - pandas >=2.1.0
+    - snakemake-minimal >=8.4
+    - biopython =1.83
+    - blast =2.15
+    - hmmer =3.4
+    - pyarrow
 
 test:
   commands:
@@ -35,9 +37,10 @@ about:
   home: https://forgemia.inra.fr/ices_imes_analysis/icescreen
   license: AGPL-3.0-or-later
   license_family: AGPL
-  summary: "ICEscreen detects and annotates ICEs (Integrative and Conjugative Elements) and IMEs (Integrative and Mobilizable Elements) in Firmicutes genomes."
-  doc_url: icescreen.migale.inrae.fr
+  summary: "ICEscreen detects and annotates ICEs (Integrative and Conjugative Elements) and IMEs (Integrative and Mobilizable Elements) in Bacillota genomes."
+  doc_url: https://icescreen.migale.inrae.fr
 
 extra:
   recipe-maintainers:
     - thomas-lacroix
+
diff --git a/recipes/idemuxcpp/build.sh b/recipes/idemuxcpp/build.sh
index 5a89adf94d5f7..7e69267c6d7cc 100644
--- a/recipes/idemuxcpp/build.sh
+++ b/recipes/idemuxcpp/build.sh
@@ -1,6 +1,8 @@
 #!/bin/sh
 
-./configure --enable-tests --prefix="${PREFIX}" BAMTOOLS_CFLAGS="-I${PREFIX}/include/" BAMTOOLS_LIBS="-L${PREFIX}/lib/ -lbamtools"
+export CXXFLAGS="-I${PREFIX}/include/bamtools ${CXXFLAGS}"
+export LDFLAGS="-L${PREFIX}/lib/ -lbamtools ${LDFLAGS}"
+./configure --enable-tests --prefix="${PREFIX}"
 make
 make install
 make check
diff --git a/recipes/idemuxcpp/meta.yaml b/recipes/idemuxcpp/meta.yaml
index 8cfa044440a7b..9c260e6708b31 100644
--- a/recipes/idemuxcpp/meta.yaml
+++ b/recipes/idemuxcpp/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "idemuxcpp" %}
-{% set version = "0.1.9" %}
-{% set sha256 = "5037a5de72e975fe888593d570a1707fbbadc0f8732bc625b5b2698aa647415d" %}
+{% set version = "0.2.0" %}
+{% set sha256 = "0e44ed269b57b9577141c70361e6c5871ef3d76b302f9c8a4c0ff2d54f30bf01" %}
 
 package:
   name: {{ name }}
@@ -11,7 +11,9 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('idemuxcpp', max_pin="x") }}
 
 requirements:
   build:
@@ -19,12 +21,12 @@ requirements:
     - {{ compiler('cxx') }}
   host:
     - zlib
-    - boost-cpp
-    - bamtools
+    - boost-cpp >=1.55
+    - bamtools >=2.5.1
   run:
     - zlib
-    - boost-cpp
-    - bamtools
+    - boost-cpp >=1.55
+    - bamtools >=2.5.1
 
 test:
   commands:
diff --git a/recipes/igblast/build.sh b/recipes/igblast/build.sh
index 8a7cbeb95c655..131eeeb29c598 100644
--- a/recipes/igblast/build.sh
+++ b/recipes/igblast/build.sh
@@ -13,37 +13,17 @@ mkdir -p $PREFIX/bin
 mkdir -p $SHARE_DIR/bin
 
 if [[ $(uname) == Linux ]]; then
-    export CPPFLAGS="$CPPFLAGS -I$PREFIX/include/ncbi-vdb"
-    export CC_FOR_BUILD=$CC
     export AR="$AR rcs"
 
     cd c++
 
-    # IgBLAST is based on the BLAST source code and building it produces
-    # a similar set of shared libraries if --with-dll is used. To avoid
-    # conflicts when installing IgBLAST and BLAST simultaneously,
-    # we link IgBLAST statically.
-    ./configure.orig \
-        --with-static-exe \
-        --with-mt \
-        --with-openmp \
-        --without-autodep \
-        --without-makefile-auto-update \
-        --with-flat-makefile \
-        --with-caution \
-        --without-lzo \
-        --without-debug \
-        --with-strip \
-        --with-z=$PREFIX \
-        --with-bz2=$PREFIX \
-        --with-vdb=$PREFIX \
-        --without-krb5 \
-        --without-openssl \
-        --without-gnutls \
-        --without-gcrypt \
-        --with-build-root=ReleaseMT \
-        --prefix=$PREFIX
+    ./configure \
+         --with-z=$PREFIX \
+         --with-bz2=$PREFIX \
+         --with-vdb=$PREFIX
+
     make -j2
+
     # Move one up so it looks like the binary release
     mv ReleaseMT/bin .
     mv src/app/igblast/{internal_data,optional_file} $SHARE_DIR
diff --git a/recipes/igblast/meta.yaml b/recipes/igblast/meta.yaml
index 92909eef6c732..b3d81839b3f4b 100644
--- a/recipes/igblast/meta.yaml
+++ b/recipes/igblast/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.21.0" %}
+{% set version = "1.22.0" %}
 
 package:
   name: igblast
@@ -20,14 +20,16 @@ about:
 
 source:
   url: ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/{{ version }}/ncbi-igblast-{{ version }}-src.tar.gz  # [linux]
-  sha256: f679a417b170e96103c088a9d1e82bfd40571526080da00fdf62de74aee82d16 # [linux]
+  sha256: a04eb195087447cf42e673401ae2d9f6ef8414b34f1534724a6953f41224df68 # [linux]
   url: ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/{{ version }}/ncbi-igblast-{{ version }}-x64-macosx.tar.gz  # [osx]
-  sha256: 9d8f13a7ab3b2ab42df3565cdf3b480bd9c04fb0ffb1d54834e67fa37d4fc09b # [osx]
+  sha256: b8a0034642b5dbef7f41c7fcfbb4bc035d2c5877d3e987af43605ea8e3d55c40 # [osx]
   patches:
     - shared_vdb.patch  # [linux]
 
 build:
-  number: 1
+  number: 0
+  run_exports:
+  - {{ pin_subpackage('igblast', max_pin="x") }}
 
 requirements:
   build:
@@ -41,6 +43,7 @@ requirements:
     - gnutls  # [osx]
     - libidn11
     - lzo # [osx]
+    - libsqlite >=3
     - ncbi-vdb >=2.9.6
   run:
     - ncbi-vdb >=2.9.6
diff --git a/recipes/igblast/shared_vdb.patch b/recipes/igblast/shared_vdb.patch
index 8e099e4a7c5a1..1ee0a5e8c12a9 100644
--- a/recipes/igblast/shared_vdb.patch
+++ b/recipes/igblast/shared_vdb.patch
@@ -1,12 +1,11 @@
-diff -u -ru ncbi-igblast-1.15.0-src/c++/src/app/igblast/Makefile.igblastn.app ncbi-igblast-1.15.0-src-patched/c++/src/app/igblast/Makefile.igblastn.app
---- ncbi-igblast-1.15.0-src/c++/src/app/igblast/Makefile.igblastn.app	2019-08-04 23:12:21.000000000 +0200
-+++ ncbi-igblast-1.15.0-src-patched/c++/src/app/igblast/Makefile.igblastn.app	2020-02-19 14:30:43.571473876 +0100
-@@ -11,7 +11,7 @@
- CXXFLAGS = $(FAST_CXXFLAGS:ppc=i386)
+--- ncbi-igblast-1.22.0-src/c++/src/app/igblast/Makefile.igblastn.app	2023-10-06 15:33:05.000000000 -0400
++++ ncbi-igblast-1.22.0-src-patched/c++/src/app/igblast/Makefile.igblastn.app	2024-01-10 11:35:41.231820985 -0500
+@@ -12,7 +12,7 @@
  LDFLAGS  = $(FAST_LDFLAGS:ppc=i386)
  
--LIBS = $(GENBANK_THIRD_PARTY_LIBS) $(VDB_STATIC_LIBS) $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(BLAST_THIRD_PARTY_LIBS) $(ORIG_LIBS)
-+LIBS = $(GENBANK_THIRD_PARTY_LIBS) $(VDB_LIBS) $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(BLAST_THIRD_PARTY_LIBS) $(ORIG_LIBS)
+ LIBS = $(BLAST_THIRD_PARTY_LIBS) $(GENBANK_THIRD_PARTY_LIBS) \
+-       $(VDB_STATIC_LIBS) $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
++       $(VDB_LIBS) $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)
  
  REQUIRES = VDB objects -Cygwin
  
diff --git a/recipes/igdiscover/meta.yaml b/recipes/igdiscover/meta.yaml
index 8da5d1628aacb..462ca5ddc11bc 100644
--- a/recipes/igdiscover/meta.yaml
+++ b/recipes/igdiscover/meta.yaml
@@ -9,9 +9,11 @@ source:
   sha256: 534f0e81b71acabe24577f0989832c61e69b73e0e562eb147b1af38c4c9bf725
 
 build:
-  number: 1
+  number: 2
   noarch: python
   script: python -m pip install --no-deps --ignore-installed .
+  run_exports:
+    - {{ pin_subpackage("igdiscover", max_pin="x.x") }}
 
 requirements:
   host:
@@ -23,7 +25,7 @@ requirements:
     - pandas >=1.0
     - numpy >=1.17.5
     - matplotlib-base >=3.1.0
-    - snakemake-minimal 5.9.*
+    - snakemake-minimal >=5.9
     - cutadapt >=3.5
     - xopen >=1.2.0
     - dnaio >=0.7.1
diff --git a/recipes/igfinder/build.sh b/recipes/igfinder/build.sh
new file mode 100644
index 0000000000000..399e98c07b4a2
--- /dev/null
+++ b/recipes/igfinder/build.sh
@@ -0,0 +1,12 @@
+#!/bin/bash
+
+set -x -e
+
+export LIBRARY_PATH="${PREFIX}/lib"
+cp igfinder.py ${LIBRARY_PATH}
+
+export BINARY_HOME="${PREFIX}/bin"
+script=${BINARY_HOME}/igfinder
+
+echo "#!/bin/bash" > $script
+echo "python2 ${LIBRARY_PATH}/igfinder.py \$@" >> $script
diff --git a/recipes/igfinder/meta.yaml b/recipes/igfinder/meta.yaml
new file mode 100644
index 0000000000000..10c40ce484fd1
--- /dev/null
+++ b/recipes/igfinder/meta.yaml
@@ -0,0 +1,39 @@
+{% set name = "igfinder" %}
+{% set version = "1.0" %}
+{% set sha256 = "dc5f65e7e6661c4cd424d7e43ef82e00cd335f688bc0a9f076946d117f57349a" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://tx.bioreg.kyushu-u.ac.jp/igfinder/igfinder.py
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage('igfinder', max_pin="x.x") }}
+
+requirements:
+  build:
+    - python =2.7
+    - biopython
+
+  host:
+    - python <3
+
+  run:
+    - python =2.7
+    - biopython
+    - numpy
+
+test:
+  commands:
+    - "igfinder -h"
+
+about:
+  home: https://tx.bioreg.kyushu-u.ac.jp/igfinder
+  license: MIT
+  summary: A tool to extract Igh and Igl/Igk gene sequences from assembled transcripts
diff --git a/recipes/igv-reports/meta.yaml b/recipes/igv-reports/meta.yaml
index 547591c5e228e..1e69cef3c08a1 100644
--- a/recipes/igv-reports/meta.yaml
+++ b/recipes/igv-reports/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "igv-reports" %}
-{% set version = "1.8.0" %}
+{% set version = "1.12.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 9d7793668da65a02907aacefe031615cb632e7c5621b903a7aec2b4096eaf302
+  sha256: 2a4bb08945e7872108a83037468249581b2fb42b2934cf33446971443175611d
 
 build:
   noarch: python
@@ -16,6 +16,8 @@ build:
   entry_points:
     - create_report=igv_reports.report:main
     - create_datauri=igv_reports.datauri:main
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   host:
@@ -38,4 +40,5 @@ about:
   home: https://github.com/igvteam/igv-reports
   license: MIT
   license_family: MIT
+  license_file: LICENSE.md
   summary: Creates self-contained html pages for visual variant review with IGV (igv.js).
diff --git a/recipes/igv/build.sh b/recipes/igv/build.sh
index b156b5aa9d4df..2dcf09d8be126 100644
--- a/recipes/igv/build.sh
+++ b/recipes/igv/build.sh
@@ -1,5 +1,7 @@
 #!/bin/bash
 
+set -eux -o pipefail
+
 mkdir -p ${PREFIX}/lib/igv
 
 # Build
diff --git a/recipes/igv/meta.yaml b/recipes/igv/meta.yaml
index 58d6514d19089..de70d2e597401 100644
--- a/recipes/igv/meta.yaml
+++ b/recipes/igv/meta.yaml
@@ -1,6 +1,6 @@
-{% set name = "igv" %}
-{% set version = "2.13.2" %}
-{% set sha256 = "cd333641247a9b3cea17833d9e16f558827df0740d5199e7052ff2bc5a93f7cd" %}
+{% set name = "IGV" %}
+{% set version = "2.17.4" %}
+{% set sha256 = "1c42fcca6fcb17d6ca6eced4bc27075f45aed62d2f9cc0d6a149e69cc56113c0" %}
 
 package:
   name: {{ name|lower }}
@@ -13,12 +13,14 @@ source:
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x") }}
 
 requirements:
   build:
-    - openjdk >=11
+    - openjdk 17
   run:
-    - openjdk >=11
+    - openjdk 17
 
 test:
   commands:
@@ -28,6 +30,8 @@ test:
 about:
   home: http://www.broadinstitute.org/software/igv/home
   license: MIT
+  license_family: MIT
+  license_file: license.txt
   summary: |
     Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics
     data and annotations.
diff --git a/recipes/igvtools/build.sh b/recipes/igvtools/build.sh
index 0ae869d62024f..d5a9b3219ba87 100644
--- a/recipes/igvtools/build.sh
+++ b/recipes/igvtools/build.sh
@@ -1,9 +1,15 @@
 #!/bin/bash
+
 outdir=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
+
 echo "OUTDIR: $outdir"
+
 mkdir -p $outdir
 mkdir -p $PREFIX/bin
+
 cp -R ./* $outdir/
 cp $RECIPE_DIR/igvtools.sh $outdir/igvtools
+
 chmod +x $outdir/igvtools
+
 ln -s $outdir/igvtools $PREFIX/bin
diff --git a/recipes/igvtools/igvtools.sh b/recipes/igvtools/igvtools.sh
index 616cdd74633eb..a2702832d9ce0 100644
--- a/recipes/igvtools/igvtools.sh
+++ b/recipes/igvtools/igvtools.sh
@@ -1,5 +1,6 @@
 #!/bin/bash
-# igvtools executable shell script, adapted from VarScan shell script
+
+# IGVtools executable shell script, adapted from VarScan shell script
 set -eu -o pipefail
 
 set -o pipefail
@@ -15,13 +16,4 @@ while [[ -h "$SOURCE" ]]; do # resolve $SOURCE until the file is no longer a sym
 done
 DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
 
-# Check whether or not to use the bundled JDK
-if [ -d "${DIR}/jdk-11" ]; then
-    echo echo "Using bundled JDK."
-    JAVA_HOME="${DIR}/jdk-11"
-    PATH=$JAVA_HOME/bin:$PATH
-else
-    echo "Using system JDK."
-fi
-
 java -Djava.awt.headless=true --module-path="${DIR}/lib" -Xmx1500m --module=org.igv/org.broad.igv.tools.IgvTools "$@"
diff --git a/recipes/igvtools/meta.yaml b/recipes/igvtools/meta.yaml
index 09048fdd01d3f..55cc6343b6e61 100644
--- a/recipes/igvtools/meta.yaml
+++ b/recipes/igvtools/meta.yaml
@@ -1,20 +1,24 @@
-{% set version = "2.14.1" %}
+{% set name = "IGVtools" %}
+{% set version = "2.17.3" %}
+{% set sha256 = "58369ad1e156dc27a7cd2861c238049563396be605a2ab1b172a008a69ad7cb4" %}
 
 package:
-  name: igvtools
+  name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: http://data.broadinstitute.org/igv/projects/downloads/2.14/IGV_{{ version }}.zip
-  sha256: 7ff649d2acb613e0dadbb07b94cc91ba6374cc699f2a19051b2966e3cea33f5f
+  url: http://data.broadinstitute.org/igv/projects/downloads/2.17/IGV_{{ version }}.zip
+  sha256: {{ sha256 }}
 
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x") }}
 
 requirements:
   run:
-    - openjdk
+    - openjdk >=17
 
 test:
   commands:
@@ -22,8 +26,8 @@ test:
 
 about:
   home: http://www.broadinstitute.org/igv/
-  summary: command line tools for IGV
-  license: MIT License
+  summary: Command line tools for IGV
+  license: MIT
   license_family: MIT
 
 extra:
diff --git a/recipes/illumina-interop/build.sh b/recipes/illumina-interop/build.sh
index faaf3519bce3b..37efdca568dbf 100644
--- a/recipes/illumina-interop/build.sh
+++ b/recipes/illumina-interop/build.sh
@@ -1,12 +1,14 @@
 #!/bin/bash
 
+set -ex
+
 mkdir -p $PREFIX/interop/bin
 mkdir -p $PREFIX/bin
 
 mkdir -p build
 cd build
 cmake -DCMAKE_INSTALL_PREFIX:PATH=$PREFIX/interop ..
-make
+make -j ${CPU_COUNT}
 make install
 for FPATH in $(find $PREFIX/interop/bin -maxdepth 1 -mindepth 1 -type f -or -type l); do
     ln -sfvn $FPATH $PREFIX/bin/interop_$(basename $FPATH)
diff --git a/recipes/illumina-interop/meta.yaml b/recipes/illumina-interop/meta.yaml
index 3c1538db42a2e..4d1c368792cfd 100644
--- a/recipes/illumina-interop/meta.yaml
+++ b/recipes/illumina-interop/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.2.4" %}
+{% set version = "1.3.1" %}
 {% set sha256 = "0335f20a6d46b3c57a7dd1c337594b156bc1e7558f44cb981f1100f396929baa" %}
 
 package:
@@ -6,12 +6,14 @@ package:
   version: '{{version}}'
 
 build:
-  number: 2
+  number: 1
   skip: true  # [osx]
-
+  run_exports:
+    - {{ pin_subpackage('illumina-interop', max_pin="x.x") }}
+    
 source:
   url: https://github.com/Illumina/interop/archive/v{{version}}.tar.gz
-  sha256: e10ee79f476d40f40a1d4c73074ea58088d82700239b1a2ae9633235afe894c3
+  sha256: 8784a38f09719f12d12a37defb24eee05085471791a136a0ad13172145819673
 
 requirements:
   build:
@@ -45,3 +47,7 @@ about:
     faster display of a subset of the original data (collapsed quality scores).
   dev_url: https://github.com/Illumina/interop
   license_family: GPL
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/illumina-utils/meta.yaml b/recipes/illumina-utils/meta.yaml
index 77fca41a9c7e2..1e42b49f2ee70 100644
--- a/recipes/illumina-utils/meta.yaml
+++ b/recipes/illumina-utils/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "2.12" %}
+{% set version = "2.13" %}
 
 package:
   name: 'illumina-utils'
@@ -6,12 +6,14 @@ package:
 
 source:
   url: https://pypi.io/packages/source/i/illumina-utils/illumina-utils-{{ version }}.tar.gz
-  sha256: '5a4835f8f1ef630e9cc501209202833f3f30f6d8fdb64d7ea1afde23f3052f7d'
+  sha256: 'e688ca221ea6178614073b72205fce7b4a54695237c7aa96713492ecd99bd56e'
 
 build:
   number: 0
   noarch: python
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage('illumina-utils', max_pin="x") }}
 
 requirements:
   host:
@@ -37,6 +39,6 @@ test:
 
 about:
   home: https://github.com/meren/illumina-utils
-  license: GNU General Public v3 or later (GPLv3+)
+  license: GPL-3.0-or-later
   license_family: GPL3
   summary: A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.8+).
diff --git a/recipes/immuneml/meta.yaml b/recipes/immuneml/meta.yaml
index a22f12301c126..14e8479833ac0 100644
--- a/recipes/immuneml/meta.yaml
+++ b/recipes/immuneml/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "immuneML" %}
-{% set version = "2.2.5" %}
+{% set version = "2.2.6" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,16 +7,18 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 8fb17ccefe18649a77e8fded8f1b91005b92d79e6775d6fc4bc37826a2e70843
+  sha256: 29dcfdeeaf561a1878631aa235b0d6dcb7205a206bb1cbd981c299fa658d9d99
 
 build:
-  number: 1
+  number: 0
   # gensim pinning doesn't work for python >=3.10
   skip: true [py2k or py <= 36 or py > 39]
   entry_points:
     - immune-ml = immuneML.app.ImmuneMLApp:main
     - immune-ml-quickstart = immuneML.workflows.instructions.quickstart:main
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('immuneml', max_pin="x") }}
 
 requirements:
   build:
@@ -71,6 +73,6 @@ extra:
   skip-lints:
     - cython_must_be_in_host
   recipe-maintainers:
-    - knutwa-ext 
+    - knutwa-ext
     - BlueBasilisk
     - pavlovicmilena
diff --git a/recipes/impg/build.sh b/recipes/impg/build.sh
new file mode 100644
index 0000000000000..d70db500fe871
--- /dev/null
+++ b/recipes/impg/build.sh
@@ -0,0 +1,9 @@
+#!/bin/bash -euo
+
+# Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
+# We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
+export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="${BUILD_PREFIX}/.cargo"
+
+# build statically linked binary with Rust
+RUST_BACKTRACE=1
+cargo install --verbose --path . --root ${PREFIX}
diff --git a/recipes/impg/meta.yaml b/recipes/impg/meta.yaml
new file mode 100644
index 0000000000000..04999b4407314
--- /dev/null
+++ b/recipes/impg/meta.yaml
@@ -0,0 +1,35 @@
+{% set name = "impg" %}
+{% set version = "0.2.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/pangenome/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: ad2f4f4ea68e0c3feb5ecef5b408bb8649c4a67f5203ca7320434ed9a070c7ee 
+
+build:
+  number: 0
+  run_exports:
+      - {{ pin_subpackage(name, max_pin='x.x') }}
+
+requirements:
+  build:
+    - {{ compiler('rust') }}
+
+test:
+  commands:
+    - impg --help
+
+about:
+  home: https://github.com/pangenome/{{ name }}
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "impg: implicit pangenome graphs"
+  dev_url: https://github.com/pangenome/{{ name }}
+
+extra:
+  recipe-maintainers:
+    - AndreaGuarracino
diff --git a/recipes/infernal/build.sh b/recipes/infernal/build.sh
index e81bb592239ce..96e0f326ebabc 100644
--- a/recipes/infernal/build.sh
+++ b/recipes/infernal/build.sh
@@ -4,8 +4,21 @@ set -ex
 
 grep -l -r "/usr/bin/perl" . | xargs sed -i.bak -e 's/usr\/bin\/perl/usr\/bin\/env perl/g'
 
+autoreconf -i
 
-./configure --prefix=$PREFIX
-make -j 2
-make check
+case $(uname -m) in
+    "x86_64") 
+        ARCH_OPTS="--enable-sse"
+        ;;
+    "aarch64")
+        # Download newer config.{sub,guess} files that support aarch64-conda-linux-gnu
+        wget "http://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.guess;hb=HEAD" -O config.guess
+        wget "http://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.sub;hb=HEAD" -O config.sub
+        ;;
+    *) 
+        ;;
+esac
+
+./configure --prefix="${PREFIX}" "${ARCH_OPTS}"
+make -j${CPU_COUNT}
 make install
diff --git a/recipes/infernal/meta.yaml b/recipes/infernal/meta.yaml
index 67b3bcad6bc71..e98e342633c4d 100644
--- a/recipes/infernal/meta.yaml
+++ b/recipes/infernal/meta.yaml
@@ -1,29 +1,37 @@
-{% set version = "1.1.4" %}
+{% set name = "infernal" %}
+{% set version = "1.1.5" %}
 
 package:
-  name: infernal
+  name: {{ name }}
   version: {{ version }}
 
 source:
-  url: http://eddylab.org/infernal/infernal-{{ version }}.tar.gz
-  sha256: f9493c7dee9fbf25f6405706818883d24b9f5e455121a0662c96c8f0307f95fc
+  url: http://eddylab.org/infernal/{{ name }}-{{ version }}.tar.gz
+  sha256: ad4ddae02f924ca7c85bc8c4a79c9f875af8df96aeb726702fa985cbe752497f
 
 build:
-  number: 4
+  number: 1
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   build:
-    - make
     - {{ compiler('c') }}
+    - make
+    - autoconf
+    - automake
+    - libtool
   host:
     - perl
-  run:
+    - libgomp  # [linux]
+    - llvm-openmp  # [osx]
+    - wget
 
 test:
   commands:
     - cmalign -h
     - cmbuild -h
-    - cmcalibrate -h 
+    - cmcalibrate -h
     - cmconvert -h
     - cmemit -h
     - cmfetch -h
@@ -35,6 +43,16 @@ test:
 about:
   home: http://eddylab.org/infernal
   license: BSD-3-Clause
+  license_family: BSD
   license_file: LICENSE
   summary: Infernal is for searching DNA sequence databases for RNA structure and sequence similarities.
   description: Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence similarities.
+  doc_url: http://eddylab.org/infernal/Userguide.pdf
+  dev_url: https://github.com/EddyRivasLab/infernal
+
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - doi:10.1093/bioinformatics/btt509
+    - biotools:infernal
diff --git a/recipes/influx-si-data-manager/meta.yaml b/recipes/influx-si-data-manager/meta.yaml
new file mode 100644
index 0000000000000..5165c63acd2c4
--- /dev/null
+++ b/recipes/influx-si-data-manager/meta.yaml
@@ -0,0 +1,46 @@
+{% set name = "influx-si-data-manager" %}
+{% set version = "1.0.2" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/influx_si_data_manager-{{ version }}.tar.gz
+  sha256: 5bac948f0c781e50a7e47f746cb7fc71f1f5de1182356a8b6952f0a622bd8fe8
+
+build:
+  entry_points:
+    - influx_si_data_manager = influx_si_data_manager.main:main
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('influx-si-data-manager', max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.9,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.9.0,<4.0.0
+    - pandas >=2.0.1,<3.0.0
+
+test:
+  imports:
+    - influx_si_data_manager
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/llegregam/influx_data_manager
+  summary: Data manager for handling influx_si inputs on Workflow4Metabolomics (usegalaxy.org)
+  license: GPL-3.0-or-later
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - llegregam
diff --git a/recipes/influx_si/meta.yaml b/recipes/influx_si/meta.yaml
index 1d3544d01efc5..b571b25f41737 100644
--- a/recipes/influx_si/meta.yaml
+++ b/recipes/influx_si/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "influx_si" %}
-{% set version = "7.0" %}
+{% set version = "7.0.4" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,11 +7,11 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: "fcc201022ba64d86246ab625a3f8fe1aaa1ff490b556a9819ffcee30e78a0547"
+  sha256: "0bbc8f7bd0bbc4ecb8884ea704969c05e924ba8decdb3a9d5013f1383e25ba41"
 
 build:
   number: 0
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
   noarch: python
   entry_points:
     - ff2ftbl = influx_si.cli:cli
@@ -21,12 +21,15 @@ build:
     - ftbl2netan = influx_si.cli:cli
     - ftbl2optR = influx_si.cli:cli
     - ftbl2xgmml = influx_si.cli:cli
-    - influx_s = influx_si.cli:cli
-    - influx_i = influx_si.cli:cli
+    - influx_s = influx_si.influx_s:main
+    - influx_i = influx_si.influx_i:main
     - res2ftbl_meas = influx_si.cli:cli
     - txt2ftbl = influx_si.txt2ftbl:main
     - ftbl2mtf = influx_si.ftbl2mtf:main
     - ftbl2metxml = influx_si.ftbl2metxml:main
+    - ftbl2labcin = influx_si.ftbl2labcin:main
+  run_exports:
+    - {{ pin_subpackage('influx_si', max_pin="x") }}
 
 requirements:
   host:
@@ -48,6 +51,7 @@ requirements:
     - r-nlsic
     - r-slam
     - r-kvh
+    - r-bitops
 
 test:
   imports:
@@ -59,12 +63,12 @@ test:
     - python -c "import shutil; shutil.rmtree('test')"
 
 about:
-  home: "https://metasys.insa-toulouse.fr/software/influx/"
+  home: "https://github.com/sgsokol/influx/"
   license: GPL-2.0-or-later
   license_family: "GPL2"
   license_file: '{{ environ["RECIPE_DIR"] }}/LICENSE'
   summary: "Metabolic flux and concentration estimation based on stable isotope labeling"
-  doc_url: "https://metasys.insa-toulouse.fr/software/influx/doc/"
+  doc_url: "https://influx-si.readthedocs.io/"
   dev_url: "https://github.com/sgsokol/influx/"
   description: |
     To install this package from bioconda run:
diff --git a/recipes/insilicoseq/checksums.md5 b/recipes/insilicoseq/checksums.md5
index 62eea9823d41f..d0cfecf9e2afb 100644
--- a/recipes/insilicoseq/checksums.md5
+++ b/recipes/insilicoseq/checksums.md5
@@ -1,2 +1,2 @@
-80319ebef7bd8f98c3d589c42ba852da  bogus-reads_R1.fastq
-f883f153efbbc1a1519c21f4829ba8dd  bogus-reads_R2.fastq
+9aeb0f7da8af96b9ce20270a50b20aec  bogus-reads_R1.fastq
+638e4fe4e8470feeb40e359995d803db  bogus-reads_R2.fastq
diff --git a/recipes/insilicoseq/meta.yaml b/recipes/insilicoseq/meta.yaml
index a781cb6775403..9839e23b74ac0 100644
--- a/recipes/insilicoseq/meta.yaml
+++ b/recipes/insilicoseq/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "1.5.4" %}
-{% set sha256 = "517b17c866dab2655e53001a343c00a9c3982359e2ac5f26d293bad0f26af00c" %}
+{% set version = "2.0.1" %}
+{% set sha256 = "a1b452fbb6781c5c04bad269836893bf8d2103215e8d131c37baa95a74b2cbaa" %}
 
 package:
   name: insilicoseq
@@ -13,15 +13,17 @@ build:
   noarch: python
   entry_points:
     - iss = iss.app:main
-  script: python -m pip install --no-deps --ignore-installed .
-  number: 1
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation . -vvv
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('insilicoseq', max_pin="x") }}
 
 requirements:
   host:
     - python
     - pip
   run:
-    - biopython <1.78
+    - biopython >=1.79
     - future
     - joblib
     - numpy
@@ -33,6 +35,8 @@ requirements:
 test:
   imports:
     - iss
+  commands:
+    - iss --help
   files:
     - bogus-genome.fasta.gz
     - checksums.md5
@@ -41,8 +45,10 @@ about:
   home: https://github.com/HadrienG/InSilicoSeq
   license: MIT
   license_family: MIT
+  license_file: LICENSE
   summary: A sequencing simulator.
   dev_url: https://github.com/HadrienG/InSilicoSeq
+  doc_url: https://insilicoseq.readthedocs.io/en/latest/
 
 extra:
   recipe-maintainers:
diff --git a/recipes/insilicosv/meta.yaml b/recipes/insilicosv/meta.yaml
new file mode 100644
index 0000000000000..2000d8906237d
--- /dev/null
+++ b/recipes/insilicosv/meta.yaml
@@ -0,0 +1,55 @@
+{% set name = "insilicosv" %}
+{% set version = "0.0.6" %}
+{% set sha256 = "be14fc77d5d53563686328e38657ce84dc34ba46e2e44eb67e4df4e44a4474eb" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: "{{ sha256 }}"
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+  noarch: python
+  entry_points:
+    - insilicosv=insilicosv.simulate:run_insilicosv
+  script: "{{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv"
+
+requirements:
+  host:
+    - pip
+    - python =>3.8
+  run:
+    - cycler
+    - kiwisolver
+    - matplotlib-base
+    - numpy
+    - pillow
+    - pyparsing
+    - pysam
+    - python >=3.8
+    - python-dateutil
+    - pyyaml
+    - six
+
+test:
+  imports:
+    - insilicosv
+  commands:
+    - insilicosv --help
+
+about:
+  home: "https://github.com/PopicLab/insilicoSV"
+  license: MIT
+  license_family: MIT
+  summary: "Simulator for complex structural variants"
+
+extra:
+  recipe-maintainers:
+    - notestaff
+    - crohlicek
+    - viq854
diff --git a/recipes/instrain/meta.yaml b/recipes/instrain/meta.yaml
index 81faa2de8d25b..04043ba16bc95 100644
--- a/recipes/instrain/meta.yaml
+++ b/recipes/instrain/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "inStrain" %}
-{% set version = "1.7.6" %}
+{% set version = "1.9.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: cfa92f562938d56dca7438d767f0a8b3ddf02beaaa7cae6286db569739ff3dce
+  sha256: 723c24c3eaff262c703213beedf2da36b9a198ae8ad9f0168a379348c386d7d2
 
 build:
   noarch: python
   number: 0
   script: "{{ PYTHON }} -m pip install . -vv --no-deps"
+  run_exports:
+    - {{ pin_subpackage('instrain', max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/intarna/build.sh b/recipes/intarna/build.sh
index fd174c6efa2cd..5e5ab3a2b0308 100644
--- a/recipes/intarna/build.sh
+++ b/recipes/intarna/build.sh
@@ -34,5 +34,7 @@ export LDFLAGS=${LDFLAGS}
 
 
 make -j ${CPU_COUNT}
-make tests -j ${CPU_COUNT}
+if [ `uname` != Darwin ] ; then # skip tests for osx to avoid timeout
+    make tests -j ${CPU_COUNT}
+fi
 make install
diff --git a/recipes/intarna/meta.yaml b/recipes/intarna/meta.yaml
index 26009b219a7b8..bb6a0cf472278 100644
--- a/recipes/intarna/meta.yaml
+++ b/recipes/intarna/meta.yaml
@@ -1,5 +1,5 @@
-{% set INTARNA_VERSION = "3.3.2" %}
-{% set INTARNA_SHA256  = "57d273fa5bb6b62636e316465240b95089273e7e9e34224ea48c9cd747e88ed1" %}
+{% set INTARNA_VERSION = "3.4.0" %}
+{% set INTARNA_SHA256  = "4b0c53472dad49f3fbe6f0d3b1613d22d7b438bf650936da6a351a25fa9d535c" %}
 {% set VRNA_VERSION = "2.4.14" %}
 
 package:
@@ -13,6 +13,8 @@ about:
 
 build:
   number: 1
+  run_exports:
+    - {{ pin_subpackage('intarna', max_pin="x.x") }}
 
 source:
   url: "https://github.com/BackofenLab/IntaRNA/releases/download/v{{INTARNA_VERSION}}/intaRNA-{{INTARNA_VERSION}}.tar.gz"
@@ -41,6 +43,8 @@ test:
     - IntaRNA -t CCCCCCCCGGGGGGGGGGGGGG -q CCCCCCC
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:intarna
     - doi:10.1093/nar/gkx279
diff --git a/recipes/integron_finder/meta.yaml b/recipes/integron_finder/meta.yaml
index ddbeab522060d..7e8566ea79450 100644
--- a/recipes/integron_finder/meta.yaml
+++ b/recipes/integron_finder/meta.yaml
@@ -1,46 +1,59 @@
-{% set name="integron_finder" %}
-{% set version="2.0.2" %}
+{% set name = "integron_finder" %}
+{% set version = "2.0.3" %}
 
 package:
-  name: {{ name }}
+  name: {{ name|lower }}
   version: {{ version }}
 
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/integron_finder-{{ version }}.tar.gz
+  sha256: 2ecc0579490daf5b75a5cedfb22b446e830a0ca547c8acae92ee2ab2a755aa01
+
 build:
+  entry_points:
+    - integron_finder=integron_finder.scripts.finder:main
+    - integron_split=integron_finder.scripts.split:main
+    - integron_merge=integron_finder.scripts.merge:main
   noarch: python
-  number: 0
-  script: python -m pip install --no-deps --ignore-installed .
-
-source:
-  url: https://files.pythonhosted.org/packages/4a/39/816165ed051a41560c9167590bf974a83de34e5a43509e9501f79cdf4ba4/integron_finder-2.0.2.tar.gz 
-  sha256: 62444c43895c2b68289bc7ceaa2da417766c82852b5ecf1c3280e41ba3beaa6f
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('integron_finder', max_pin="x") }}
 
 requirements:
   host:
-    - python >=3.7,<=3.10
+    - python >=3.10
     - pip
   run:
-    - python >=3.7,<=3.10
-    - biopython ==1.78
-    - numpy ==1.19.4
-    - matplotlib-base ==3.3.3
-    - colorlog <=6.6.0
-    - pandas ==1.1.5
+    - python >=3.10
+    - numpy >=1.26
+    - matplotlib-base >=3.8
+    - pandas >=2
+    - biopython >=1.82
+    - colorlog
     - hmmer >=3.1b2,<=3.3.2
     - infernal >=1.1.2,<=1.1.4
     - prodigal >=2.6.3
 
 test:
+  imports:
+    - integron_finder
   commands:
-    - integron_finder --version
+    - integron_finder --help
+    - integron_split --help
+    - integron_merge --help
 
 about:
-  home: https://github.com/gem-pasteur/Integron_Finder
-  license: 'GPLv3'
+  home: https://github.com/gem-pasteur/Integron_Finder/
+  summary: Integron Finder aims at detecting integrons in DNA sequences
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: COPYING
-  summary: 'Finds integrons in DNA sequences'
+  doc_url: https://integronfinder.readthedocs.io/en/latest/
+  dev_url: https://github.com/gem-pasteur/Integron_Finder/
 
 extra:
   recipe-maintainers:
-    - thanhleviet
-  doi:
-    - 10.1093/nar/gkw319
+    - bneron
+  identifiers:
+    - doi:10.3390/microorganisms10040700
diff --git a/recipes/ionquant/academic_install.py b/recipes/ionquant/academic_install.py
new file mode 100755
index 0000000000000..fb4adafac6868
--- /dev/null
+++ b/recipes/ionquant/academic_install.py
@@ -0,0 +1,74 @@
+#!/usr/bin/env python3
+
+# Automates accepting the academic license agreements in order to download IonQuant. A user of this package is then expected to accept the terms themselves when they download a license key from the IonQuant site, which is enforced by the wrapper script and IonQuant jar file.
+
+import argparse
+import hashlib
+import os
+import re
+import sys
+import urllib.request
+import urllib.parse
+
+IONQUANT_URL = 'http://msfragger-upgrader.nesvilab.org/ionquant/upgrade_download.php'
+DOWNLOAD_READ_SIZE = 1000000
+
+def download_url(url, post_dict, dest):
+    data = urllib.parse.urlencode(post_dict).encode('ascii')
+    with open(dest, 'wb') as wh:
+        size = 0
+        m = hashlib.sha256()
+        with urllib.request.urlopen(url, data) as f:
+            while True:
+                seg = f.read(DOWNLOAD_READ_SIZE)
+                m.update(seg)
+                bytes_read = len(seg)
+                if bytes_read < 1:
+                    break
+                size += bytes_read
+                wh.write(seg)
+
+        return m.hexdigest()
+
+def parse_version(version_string):
+    version_pattern = '([\\d.]+)'
+    m = re.search(version_pattern, version_string.strip())
+    if m:
+        return m.groups()[0]
+    return None
+
+parser = argparse.ArgumentParser(
+    description="Download IonQuant zip file."
+)
+parser.add_argument(
+    '-n', '--name', help='user name'
+)
+parser.add_argument(
+    '-e', '--email', help='email'
+)
+parser.add_argument(
+    '-o', '--organization', help='institutional organization'
+)
+parser.add_argument(
+    '-i', '--ionquant_version', help='IonQuant version', required=True
+)
+parser.add_argument(
+    '-p', '--path', default='.', help='path in which to install'
+)
+parser.add_argument(
+    '--hash', default='.', help='SHA256 hash of downloaded zip'
+)
+
+args = parser.parse_args()
+iq_ver = parse_version(args.ionquant_version)
+if iq_ver == None:
+    print(f'Could not find version: {args.ionquant_version}', file=sys.stderr)
+    sys.exit(1)
+
+iq_zip = iq_ver + '$zip'
+dest = os.path.join(args.path, 'IonQuant-' + iq_ver + '.zip')
+data = {'transfer': 'academic', 'agreement1': 'true', 'name': args.name, 'email' : args.email, 'organization' : args.organization, 'download': iq_zip}
+
+if download_url(IONQUANT_URL, data, dest) != args.hash:
+    print('Invalid hash calculated.', file=sys.stderr)
+    sys.exit(1)
diff --git a/recipes/ionquant/build.sh b/recipes/ionquant/build.sh
new file mode 100644
index 0000000000000..2d90fc8dea952
--- /dev/null
+++ b/recipes/ionquant/build.sh
@@ -0,0 +1,34 @@
+#!/bin/bash
+
+# These values are submitted to the IonQuant site when downloading the application zip.
+if [[ -z "$NAME" ]]; then
+    NAME="${USERNAME:-bioconda}";
+fi
+if [[ -z "$EMAIL" ]]; then
+    EMAIL="${NAME}@${HOSTNAME:-bioconda.org}";
+fi
+if [[ -z "$INSTITUTION" ]]; then
+    INSTITUTION="${HOSTNAME:-bioconda.org}";
+fi
+
+# Create directories
+TARGET="$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM"
+mkdir -p "$TARGET"
+
+# Add wrapper python script and link to unprefixed name.
+cp "$RECIPE_DIR/ionquant.py" "$TARGET"
+ln -s "$TARGET/ionquant.py" "$PREFIX/bin/ionquant"
+chmod 0755 "${PREFIX}/bin/ionquant"
+
+# This script automates accepting the academic license agreements in order to download the software and build the package. A user of this package is then expected to accept the terms themselves when they download a license key from the IonQuant site, which is enforced by the wrapper script and IonQuant jar file.
+"${RECIPE_DIR}/academic_install.py" -n galaxy -e "$EMAIL" -o "$INSTITUTION" -i "$PKG_VERSION" -p "$TARGET" --hash "$SHA256SUM"
+if [[ $? -ne 0 ]]; then
+    echo "Problem downloading jar file." > /dev/stderr
+    exit 1;
+fi
+
+# Unzip and link jar.
+cd "$TARGET"
+unzip "IonQuant-$PKG_VERSION.zip"
+ln -s "IonQuant-$PKG_VERSION/IonQuant-$PKG_VERSION.jar" "IonQuant.jar"
+rm "IonQuant-$PKG_VERSION.zip"
diff --git a/recipes/ionquant/ionquant.py b/recipes/ionquant/ionquant.py
new file mode 100755
index 0000000000000..a56491cf08d33
--- /dev/null
+++ b/recipes/ionquant/ionquant.py
@@ -0,0 +1,86 @@
+#!/usr/bin/env python
+#
+# Wrapper script for Java Conda packages that ensures that the java runtime
+# is invoked with the right options. Adapted from the bash script (http://stackoverflow.com/questions/59895/can-a-bash-script-tell-what-directory-its-stored-in/246128#246128).
+#
+
+import os
+import sys
+import subprocess
+from os import access, getenv, X_OK
+
+jar_file = os.path.join(os.path.dirname(os.path.realpath(__file__)), "IonQuant.jar")
+
+default_jvm_mem_opts = ['-Xms512m', '-Xmx1g']
+
+license_agreement_text = '''
+Please provide pass a license key with the --key argument. You may obtain a key by agreeing to the terms at https://msfragger.arsci.com/ionquant/.
+'''
+
+def real_dirname(path):
+    """Return the symlink-resolved, canonicalized directory-portion of path."""
+    return os.path.dirname(os.path.realpath(path))
+
+
+def java_executable():
+    """Return the executable name of the Java interpreter."""
+    java_home = getenv('JAVA_HOME')
+    java_bin = os.path.join('bin', 'java')
+
+    if java_home and access(os.path.join(java_home, java_bin), X_OK):
+        return os.path.join(java_home, java_bin)
+    else:
+        return 'java'
+
+
+def jvm_opts(argv):
+    """Construct list of Java arguments based on our argument list.
+
+    The argument list passed in argv must not include the script name.
+    The return value is a 3-tuple lists of strings of the form:
+      (memory_options, prop_options, passthrough_options)
+    """
+    mem_opts = []
+    prop_opts = []
+    pass_args = []
+
+    for arg in argv:
+        if arg.startswith('-D'):
+            prop_opts.append(arg)
+        elif arg.startswith('-XX'):
+            prop_opts.append(arg)
+        elif arg.startswith('-Xm'):
+            mem_opts.append(arg)
+        else:
+            pass_args.append(arg)
+
+    # In the original shell script the test coded below read:
+    #   if [ "$jvm_mem_opts" == "" ] && [ -z ${_JAVA_OPTIONS+x} ]
+    # To reproduce the behaviour of the above shell code fragment
+    # it is important to explictly check for equality with None
+    # in the second condition, so a null envar value counts as True!
+
+    if mem_opts == [] and getenv('_JAVA_OPTIONS') == None:
+        mem_opts = default_jvm_mem_opts
+
+    return (mem_opts, prop_opts, pass_args)
+
+
+def main():
+    java = java_executable()
+    jar_dir = real_dirname(sys.argv[0])
+    jar_path = os.path.join(jar_dir, jar_file)
+    jar_arg = '-jar'
+
+    (mem_opts, prop_opts, pass_args) = jvm_opts(sys.argv[1:])
+
+    if '--key' not in sys.argv:
+        print(license_agreement_text)
+        sys.exit(1)
+
+    java_args = [java] + mem_opts + prop_opts + [jar_arg] + [jar_path] + pass_args
+
+    sys.exit(subprocess.call(java_args))
+
+if __name__ == '__main__':
+    main()
diff --git a/recipes/ionquant/meta.yaml b/recipes/ionquant/meta.yaml
new file mode 100644
index 0000000000000..aa9cf7e1b9ded
--- /dev/null
+++ b/recipes/ionquant/meta.yaml
@@ -0,0 +1,50 @@
+{% set version = "1.10.12" %}
+
+# This key was generated ONLY for the testing of this bioconda package.
+# Users must generate their own key by agreeing to the terms at https://msfragger.arsci.com/ionquant/IonQuant%20Academic%20Use%20License%2005162022.pdf.
+{% set academic_use_only_key = "47cb2953-b4bf7726-2c96f5fe-8f1013aa" %}
+{% set sha256sum = "861a633ab815a34ea54e6e26f318e19b510b25cb8955f3daeb83d6d10c6938ea" %}
+
+package:
+  name: ionquant
+  version: {{ version }}
+
+build:
+  number: 1
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage('ionquant', max_pin="x.x") }}
+  script_env:
+    - SHA256SUM={{ sha256sum }}
+
+requirements:
+  host:
+    - python >=3.9
+    - unzip
+  run:
+    - openjdk >=11
+    - python >=3.8
+
+test:
+  commands:
+    - ionquant --key {{ academic_use_only_key }} -Xms512m -Xmx1g --help | grep 'License key verified'
+
+about:
+  home: https://github.com/Nesvilab/IonQuant
+  license: Academic License (https://msfragger.arsci.com/ionquant/IonQuant%20Academic%20Use%20License%2005162022.pdf)
+  summary: A label free quantification tool
+  description: |
+    IonQuant is a fast and comprehensive tool for MS1 precursor intensity-based quantification for timsTOF PASEF DDA and non-timsTOF (e.g., Orbitrap) data.
+    It enables label-free quantification with false discovery (FDR) controlled match-between-runs (MBR).
+    It can also be used for quantification in labelling-based experiments such as those involving SILAC, dimethyl, or similar labelling strategies.
+
+    IonQuant is available freely for academic research and educational purposes only, in accordance with the terms at https://msfragger.arsci.com/ionquant/IonQuant%20Academic%20Use%20License%2005162022.pdf.
+
+extra:
+  recipe-maintainers:
+    - reid-wagner
+  notes: |
+    The "ionquant" command runs the IonQuant java program.
+  identifiers:
+    - biotools:fragpipe
+    - doi:10.1074/mcp.TIR120.002048
diff --git a/recipes/iow/meta.yaml b/recipes/iow/meta.yaml
index 3e2c487b8cf80..22163552ec6cb 100644
--- a/recipes/iow/meta.yaml
+++ b/recipes/iow/meta.yaml
@@ -10,8 +10,10 @@ source:
   sha256: 6b3ddb08f7ec1dec265de4a0f6025c7a4c81df5aa613f3ead5633073b0fe2271
 
 build:
-  number: 3
+  number: 4
   skip: True  # [py2k]
+  run_exports:
+    - {{ pin_subpackage('iow', max_pin='x') }}
 
 requirements:
   build:
@@ -50,5 +52,7 @@ about:
   dev_url: https://github.com/biocore/improved-octo-waddle
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   recipe-maintainers:
     - wasade
diff --git a/recipes/ipapy2/meta.yaml b/recipes/ipapy2/meta.yaml
new file mode 100644
index 0000000000000..8086d39f7d189
--- /dev/null
+++ b/recipes/ipapy2/meta.yaml
@@ -0,0 +1,44 @@
+{% set name = "ipaPy2" %}
+{% set version = "1.3.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/ipaPy2-{{ version }}.tar.gz
+  sha256: 8a94928064ea6a97f5b8800f2ff81faaa2b1417f5765a22755a9543102b9cc4e
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv
+  number: 0
+
+requirements:
+  host:
+    - python >=3.8
+    - pytest-runner
+    - pip
+  run:
+    - python >=3.8
+    - pandas
+    - molmass >=2021.6.18
+    - scipy >=1.8.1
+    - tqdm >=4.64.0
+
+test:
+  imports:
+    - ipaPy2
+  requires:
+    - pytest
+
+about:
+  home: https://github.com/francescodc87/ipaPy2
+  summary: Integrated Probabilistic Annotation (IPA) 2.0 - Python implementation
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - hechth
+    - francescodc87
diff --git a/recipes/iphop/build.sh b/recipes/iphop/build.sh
index f2f441a01a60a..200275ba0f084 100644
--- a/recipes/iphop/build.sh
+++ b/recipes/iphop/build.sh
@@ -1,5 +1,5 @@
 echo " === Start build"
-${PYTHON} -m pip install . -vv
+${PYTHON} -m pip install . --no-deps --no-build-isolation -vvv
 echo "Pip install done - now adjusting the library paths"
 for CHANGE in "activate" "deactivate"
 do
diff --git a/recipes/iphop/meta.yaml b/recipes/iphop/meta.yaml
index cf598bdda53c6..df7fd52d2da88 100644
--- a/recipes/iphop/meta.yaml
+++ b/recipes/iphop/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "iphop" %}
-  {% set version = "1.3.2" %}
+  {% set version = "1.3.3" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,11 +7,13 @@ package:
 
 source:
   url: https://bitbucket.org/srouxjgi/iphop/downloads/{{ name }}-{{ version }}.tar.gz
-  sha256: 1d4678c4ee8d47b798c0b105e156c382585f07aeac528ba9b7f3a2dc5d1d3ed3
+  sha256: dfa42bcd31a076b213a97e105a5ddc8725531f7a5e069ba2645789f6adcfb85e
 
 build:
   number: 0
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('iphop', max_pin="x") }}
 
 requirements:
   build:
@@ -22,7 +24,7 @@ requirements:
     - numpy 1.23.*
     - tensorflow 2.7.*
     - perl <6
-    - perl-bioperl <=1.7
+    - perl-bioperl
     - blast 2.12.*
     - biopython 1.79.*
     - scikit-learn 0.22.*
@@ -44,6 +46,12 @@ test:
 about:
   home: "https://bitbucket.org/srouxjgi/iphop/"
   license: Modified GPL v3
-  license_family: GPL
+  license_family: GPL3
   license_file: LICENSE.txt
   summary: "Predict host genus from genomes of uncultivated phages."
+
+extra:
+  identifiers:
+    - doi:10.1371/journal.pbio.3002083
+  recipe-maintainers:
+    - simroux
diff --git a/recipes/ipk/0001_makes_python_wrapper_to_expect_binaries_in_same_directory.patch b/recipes/ipk/0001_makes_python_wrapper_to_expect_binaries_in_same_directory.patch
new file mode 100644
index 0000000000000..09fbddb9e465f
--- /dev/null
+++ b/recipes/ipk/0001_makes_python_wrapper_to_expect_binaries_in_same_directory.patch
@@ -0,0 +1,20 @@
+diff --git a/ipk.py b/ipk.py
+index fb884f3..71bf356 100755
+--- a/ipk.py
++++ b/ipk.py
+@@ -268,12 +268,12 @@ def build_database(ar,
+         if keep_positions:
+             raise RuntimeError("--keep-positions is not supported for DNA.")
+         else:
+-            bin = f"{current_dir}/bin/ipk/ipk-dna"
++            bin = f"{current_dir}/ipk-dna"
+     else:
+         if keep_positions:
+-            bin = f"{current_dir}/bin/ipk/ipk-aa-pos"
++            bin = f"{current_dir}/ipk-aa-pos"
+         else:
+-            bin = f"{current_dir}/bin/ipk/ipk-aa"
++            bin = f"{current_dir}/ipk-aa"
+ 
+ 
+     command = [
diff --git a/recipes/ipk/0002_default_threads_to_1_to_avoid_raxmlng_oversubscription.patch b/recipes/ipk/0002_default_threads_to_1_to_avoid_raxmlng_oversubscription.patch
new file mode 100644
index 0000000000000..a8ca9c821a683
--- /dev/null
+++ b/recipes/ipk/0002_default_threads_to_1_to_avoid_raxmlng_oversubscription.patch
@@ -0,0 +1,13 @@
+diff --git a/ipk.py b/ipk.py
+index fb884f3..1310237 100755
+--- a/ipk.py
++++ b/ipk.py
+@@ -191,7 +191,7 @@ def validate_model(ctx, param, value):
+               Saves time during database load and save, but requires more disk space.""")
+ @click.option('--threads',
+              type=int,
+-             default=4, 
++             default=1, 
+              show_default=True,
+              help="Number of threads used to compute phylo-k-mers.")
+ def build(ar,
diff --git a/recipes/ipk/0003_osx_compilation_requires_sstream_for_std-basic_istringstream.patch b/recipes/ipk/0003_osx_compilation_requires_sstream_for_std-basic_istringstream.patch
new file mode 100644
index 0000000000000..3e26523c379f4
--- /dev/null
+++ b/recipes/ipk/0003_osx_compilation_requires_sstream_for_std-basic_istringstream.patch
@@ -0,0 +1,11 @@
+diff --git a/ipk/src/ar.cpp b/ipk/src/ar.cpp
+index 2ea4eed..cebe283 100644
+--- a/ipk/src/ar.cpp
++++ b/ipk/src/ar.cpp
+@@ -1,5 +1,6 @@
+ #include <iostream>
+ #include <fstream>
++#include <sstream>
+ #include <numeric>
+ #include <cmath>
+ #include <string>
diff --git a/recipes/ipk/build.sh b/recipes/ipk/build.sh
new file mode 100644
index 0000000000000..7bc80e3d09470
--- /dev/null
+++ b/recipes/ipk/build.sh
@@ -0,0 +1,28 @@
+#!/bin/bash
+set -ex
+
+export CPLUS_INCLUDE_PATH=${PREFIX}/include
+export CPP_INCLUDE_PATH=${PREFIX}/include
+export CXX_INCLUDE_PATH=${PREFIX}/include
+
+#to ensure zlib location
+export CFLAGS="$CFLAGS -I$PREFIX/include"
+export LDFLAGS="$LDFLAGS -L$PREFIX/lib"
+
+mkdir -p $PREFIX/bin
+mkdir -p $PREFIX/lib
+
+cmake -B build -DHASH_MAP=USE_TSL_ROBIN_MAP -DCMAKE_CXX_FLAGS="-O3" -DBUILD_SHARED_LIBS=ON --install-prefix=$PREFIX
+cmake --build build --target all
+cmake --install build
+
+ls build/ipk
+
+cp build/ipk/ipk-aa $PREFIX/bin
+cp build/ipk/ipk-aa-pos $PREFIX/bin
+cp build/ipk/ipk-dna $PREFIX/bin
+
+chmod +x $PREFIX/bin/ipk-aa
+chmod +x $PREFIX/bin/ipk-dna
+chmod +x $PREFIX/bin/ipk-aa-pos
+chmod +x $PREFIX/bin/ipk.py
diff --git a/recipes/ipk/meta.yaml b/recipes/ipk/meta.yaml
new file mode 100644
index 0000000000000..a44263c3004b3
--- /dev/null
+++ b/recipes/ipk/meta.yaml
@@ -0,0 +1,56 @@
+{% set name = "IPK" %}
+{% set version = "0.5.0" %}
+{% set sha256 = "7d073583d0f9891a30ec6865fee33818b526086a1f0de04028409496b279004c" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/phylo42/{{ name|lower }}/releases/download/v{{ version }}/IPK-v{{ version }}_src_for_bioconda.tar.gz
+  sha256: {{ sha256 }}
+  patches:
+    - 0001_makes_python_wrapper_to_expect_binaries_in_same_directory.patch
+    - 0002_default_threads_to_1_to_avoid_raxmlng_oversubscription.patch
+    - 0003_osx_compilation_requires_sstream_for_std-basic_istringstream.patch
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('ipk', max_pin="x.x") }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('cxx') }}
+    - cmake
+  host:
+    - boost-cpp >=1.67
+    - zlib
+  run:
+    - boost-cpp >=1.67
+    - raxml-ng
+    - phyml
+    - python
+    - click
+
+# git-lfs is absent from the docker image, so test files are not cloned
+# unstable workaround it to set wget as a test dependancy
+# and download them from github in the run_tests.sh script
+test:
+  requires:
+    - wget
+  # because they are not cloned, we cannot copy them from source in the test environment
+  #source_files:
+  #  - tests/data/neotrop/reference.fasta
+  #  - tests/data/neotrop/tree.rooted.newick
+  
+
+about:
+  home: https://github.com/phylo42/ipk
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "IPK is a tool for computing phylo-k-mers for a fixed phylogeny."
+  description: "IPK is a tool for computing phylo-k-mers for a fixed phylogeny. Please cite: doi.org/10.1093/bioinformatics/btad692"
+
diff --git a/recipes/ipk/run_test.sh b/recipes/ipk/run_test.sh
new file mode 100644
index 0000000000000..64be368cb924b
--- /dev/null
+++ b/recipes/ipk/run_test.sh
@@ -0,0 +1,67 @@
+#!/usr/bin/env bash
+
+PASS=true
+
+# A
+echo "test A"
+command -v ipk-dna
+if [ $? -ne 0  ]; then
+  echo "failed"
+  PASS=false
+fi
+
+# B
+echo "test B"
+command -v ipk-aa
+if [ $? -ne 0 ]; then
+  echo "failed"
+  PASS=false
+fi
+
+# C
+echo "test C"
+ipk-dna 2>&1 | grep "the option '--ar-binary' is required"
+if [ $? -ne 0 ]; then
+  echo "failed"
+  PASS=false
+fi
+
+# D
+echo "test D"
+ipk.py build --help
+if [ $? -ne 0 ]; then
+  echo "failed"
+  PASS=false
+fi
+
+# E
+# test files cannot be retrieved via meta.yaml (field test:source)
+# because git-lfs is not available in the github tarball release
+# we need to download them manually
+#echo "test E"
+
+#wget -O reference.fasta https://github.com/phylo42/IPK/raw/main/tests/data/neotrop/reference.fasta 
+#wget -O tree.rooted.newick https://github.com/phylo42/IPK/raw/main/tests/data/neotrop/tree.rooted.newick
+#test -s reference.fasta
+#test -s tree.rooted.newick
+#mkdir -p tests_output
+#ipk.py build -r reference.fasta -t tree.rooted.newick -m GTR -k 7 --omega 2.0 -u 1.0 -b $(which raxml-ng) -w tests_output
+#if [ $? -ne 0 ]; then
+#  echo "failed"
+#  PASS=false
+#fi
+
+#ls tests_output
+#echo $PASS
+
+# F
+#echo "test F"
+#if [ ! -s tests_output/DB_k7_o2.0.rps ]; then
+#  echo "failed"
+#  PASS=false
+#fi
+
+if [ "$PASS" = false ]; then
+  echo "At least 1 test failed !"
+  exit 1
+fi
diff --git a/recipes/ipyrad/meta.yaml b/recipes/ipyrad/meta.yaml
index 40144e4977ab8..dc31ad13e636f 100644
--- a/recipes/ipyrad/meta.yaml
+++ b/recipes/ipyrad/meta.yaml
@@ -1,21 +1,23 @@
 {% set name = "ipyrad" %}
-{% set version = "0.9.92" %}
-{% set sha256 = "f9cb5eca40d5fc1d93364815af7608d0b2e89fcf675724541a50e7159617395f" %}
+{% set version = "0.9.95" %}
+{% set sha256 = "c0a25f057cf5a6e812c4ff180291212b33bc50cd76f014b4d37337fd7ac0c335" %}
 
 package:
-  name: {{name}}
-  version: {{version}}
+  name: {{ name }}
+  version: {{ version }}
 
 source:
-  url: https://github.com/dereneaton/{{name}}/archive/{{version}}.tar.gz
-  sha256: {{sha256}}
+  url: https://github.com/dereneaton/{{ name }}/archive/{{ version }}.tar.gz
+  sha256: {{ sha256 }}
 
 build:
   number: 0
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
-  noarch: python  
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vv"
+  noarch: python
   entry_points:
     - ipyrad = ipyrad.__main__:main
+  run_exports:
+    - {{ pin_subpackage('ipyrad', max_pin="x.x") }}
 
 requirements:
   host:
@@ -36,7 +38,7 @@ requirements:
     - mpi4py >=3.0  # [ py >= 37 ]
     - notebook
     - bedtools
-    - muscle <5 # Pin muscle < v5 see issue #477
+    - muscle <5  # Pin muscle < v5 see issue #477
     - vsearch >=2.13
     - bwa
     - samtools
@@ -52,5 +54,6 @@ test:
 about:
   home: http://github.com/dereneaton/ipyrad
   license: GPL-3.0-only
+  license_family: GPL3
   license_file: LICENSE.txt
   summary: Interactive assembly and analysis of RAD-seq data sets.
diff --git a/recipes/iqtree/0001-PATCH-macos-10.9.patch b/recipes/iqtree/0001-PATCH-macos-10.9.patch
deleted file mode 100644
index fb669f5058460..0000000000000
--- a/recipes/iqtree/0001-PATCH-macos-10.9.patch
+++ /dev/null
@@ -1,21 +0,0 @@
-diff --git a/CMakeLists.txt b/CMakeLists.txt
-index 8e7ec080..f1275556 100644
---- a/CMakeLists.txt
-+++ b/CMakeLists.txt
-@@ -146,13 +146,13 @@ if (WIN32)
-     add_definitions(-DWIN32)
- elseif (APPLE)
-     message("Target OS     : Mac OS X")
--    # to be compatible back to Mac OS X 10.7
-+    # to be compatible back to Mac OS X 10.9
-     if (IQTREE_FLAGS MATCHES "oldmac")
-         add_definitions("-mmacosx-version-min=10.5")
-         set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -mmacosx-version-min=10.5")
-     else()
--        add_definitions("--target=x86_64-apple-macos10.7")
--        set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} --target=x86_64-apple-macos10.7")
-+        add_definitions("--target=x86_64-apple-macos10.9")
-+        set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} --target=x86_64-apple-macos10.9")
-     endif()
-     SET(CMAKE_FIND_LIBRARY_SUFFIXES .a ${CMAKE_FIND_LIBRARY_SUFFIXES})
- elseif (UNIX)
diff --git a/recipes/iqtree/build.sh b/recipes/iqtree/build.sh
index 02995093a16cb..6673820d69098 100644
--- a/recipes/iqtree/build.sh
+++ b/recipes/iqtree/build.sh
@@ -1,20 +1,23 @@
 #!/bin/bash
+set -ex
 
 export INCLUDES="-I${PREFIX}/include"
 export LIBPATH="-L${PREFIX}/lib"
 export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
-export CFLAGS="${CFLAGS} -I${PREFIX}/include"
+export CFLAGS="${CFLAGS} -O3"
+export CPPFLAGS="${CPPFLAGS} -I${PREFIX}/include"
+export CXXFLAGS="${CXXFLAGS} -std=c++14"
 
 if [ "$(uname)" == Darwin ]; then
-    export CMAKE_C_COMPILER="clang"
-    export CMAKE_CXX_COMPILER="clang++"
+	export CMAKE_C_COMPILER="clang"
+	export CMAKE_CXX_COMPILER="clang++"
 fi
 
-mkdir build
-cd build
+cmake -S . -B build -DCMAKE_INSTALL_PREFIX="${PREFIX}" -DCMAKE_BUILD_TYPE=Release \
+	-DUSE_LSD2=ON -DIQTREE_FLAGS=omp -DCMAKE_CXX_COMPILER="${CXX}" \
+	-DCMAKE_CXX_FLAGS="${CXXFLAGS}" -Wno-dev -Wno-deprecated --no-warn-unused-cli
 
-cmake -D CMAKE_INSTALL_PREFIX:PATH=${PREFIX} -DUSE_LSD2=ON -DIQTREE_FLAGS=omp ..
+cmake --build build --target install -j 1
 
-make --jobs "${CPU_COUNT}"
-make install
-cp "${PREFIX}"/bin/iqtree2 "${PREFIX}"/bin/iqtree
+chmod 755 "${PREFIX}/bin/iqtree2"
+cp -f "${PREFIX}"/bin/iqtree2 "${PREFIX}"/bin/iqtree
diff --git a/recipes/iqtree/meta.yaml b/recipes/iqtree/meta.yaml
index ad2344f4126d2..b6d927a1d3346 100644
--- a/recipes/iqtree/meta.yaml
+++ b/recipes/iqtree/meta.yaml
@@ -1,13 +1,15 @@
 {% set name = "IQTREE" %}
-{% set version = "2.2.2.7" %}
-{% set sha256 = "407a1a56d352ba9c2152a1d708cd29db872a41c252fbdc7acd8e0de0da8af008" %}
+{% set version = "2.3.4" %}
+{% set sha256 = "3c348a937593262c829d47f4a63cf7de1c8230efcdccccc0885a1826eed66172" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version | replace("-", "_") }}
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('iqtree', max_pin="x") }}
 
 source:
   - url: https://github.com/iqtree/iqtree2/archive/refs/tags/v{{ version }}.tar.gz
@@ -21,9 +23,10 @@ requirements:
     - {{ compiler('cxx') }}
     - make
     - cmake
-    - llvm-openmp  # [osx]
-    - ld64 # [osx]
   host:
+    - libgomp  # [linux]
+    - llvm-openmp  # [osx]
+    - ld64  # [osx]
     - boost-cpp
     - eigen
     - zlib
@@ -34,16 +37,21 @@ test:
     - iqtree2
 
 about:
-  home: "http://www.iqtree.org/"
+  home: "http://www.iqtree.org"
   dev_url: "https://github.com/iqtree/iqtree2"
-  license: GPL-2.0-or-later
+  license: "GPL-2.0-or-later"
+  license_family: GPL2
   license_file: LICENSE
   summary: "Efficient phylogenomic software by maximum likelihood."
+  doc_url: "http://www.iqtree.org/doc"
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:iq-tree
     - doi:10.1093/molbev/msu300
     - doi:10.1038/nmeth.4285
     - doi:10.1093/molbev/msx281
+    - doi:10.1093/sysbio/syae008
     - usegalaxy-eu:{{ name|lower }}
diff --git a/recipes/irf/build.sh b/recipes/irf/build.sh
new file mode 100644
index 0000000000000..c7416aa91ac4a
--- /dev/null
+++ b/recipes/irf/build.sh
@@ -0,0 +1,7 @@
+#!/bin/bash
+mkdir -p "${PREFIX}"/bin
+cd src
+$CC -c -o irf.o irf.3.c -O2
+$CC -c -o easylife.o easylife.c -O2
+$CC -o $PREFIX/bin/irf irf.o easylife.o -lm
+rm -f *.o
diff --git a/recipes/irf/meta.yaml b/recipes/irf/meta.yaml
new file mode 100644
index 0000000000000..c565b0b991f9b
--- /dev/null
+++ b/recipes/irf/meta.yaml
@@ -0,0 +1,26 @@
+package:
+  name: irf
+  version: "3.08"
+
+source:
+  url: https://github.com/Benson-Genomics-Lab/IRF/archive/refs/tags/IRFv3.08.tar.gz
+  md5: 9dcda300faaa1af49f12c77ce748f287
+
+build:
+  number: 0
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - make
+
+test:
+  commands:
+    - irf
+
+about:
+  home: https://github.com/Benson-Genomics-Lab/IRF
+  license_file: COPYING
+  license: GNU Affero General Public License, Version 3.0
+  summary: Inverted Repeats Finder is a program that detects approximate inverted repeats.
diff --git a/recipes/irissv/meta.yaml b/recipes/irissv/meta.yaml
index 88b85d9548522..842485ab0d1d9 100644
--- a/recipes/irissv/meta.yaml
+++ b/recipes/irissv/meta.yaml
@@ -1,16 +1,19 @@
-{% set version = "1.0.4" %}
+{% set name = "irissv" %}
+{% set version = "1.0.5" %}
 
 package:
-  name: irissv
+  name: "{{ name }}"
   version: {{ version }}
 
 source:
-  url: https://github.com/mkirsche/Iris/archive/{{ version }}.tar.gz
-  sha256: 1a7b609fa582abf901ef7392dd84fbcdabdca930be28cb0decb9fd7389aff6a2
+  url: https://github.com/mkirsche/Iris/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: a71718d418fb8b1afacbe2b3a6b91fd50cadc9e12c0b532739b955e455913b0b
 
 build:
   noarch: generic
-  number: 2 
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   run:
diff --git a/recipes/isatools/meta.yaml b/recipes/isatools/meta.yaml
index f5a951f7efa74..b0512850f77f5 100644
--- a/recipes/isatools/meta.yaml
+++ b/recipes/isatools/meta.yaml
@@ -1,54 +1,75 @@
-{% set version = "0.12.2" %}
-{% set sha256 = "dd3afc84b21f72c682f4de2ea2ce1df7acb6d7432aa750da1c375d840b9cf5f0" %}
+{% set name = "isatools" %}
+{% set version = "0.14.2" %}
+{% set sha256 = "a5909065072b1efc81602c5f151c7b28813227047b0bbc7c7a81eeb79950e842" %}
 
 package:
-  name: isatools
-  version: '{{ version }}'
+  name: {{ name|lower }}
+  version: {{ version }}
 
 source:
-  url: https://pypi.io/packages/source/i/isatools/isatools-{{ version }}.tar.gz
-  sha256: '{{ sha256 }}'
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/isatools-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
 
 build:
   noarch: python
+  script: {{ PYTHON }} -m pip install . --no-deps -vvv
   number: 0
-  script: python -m pip install --no-deps --ignore-installed .
   entry_points:
     - isatools = isatools:main
+  run_exports:
+    - {{ pin_subpackage('isatools', max_pin="x") }}
 
 requirements:
   host:
-    - python >=3
+    - python >=3.6
     - pip
   run:
-    - python >=3
+    - python >=3.6
+    - graphene ==3.1.1
+    - graphql-core ==3.2.3
     - numpy
     - jsonschema
-    - pandas
+    - pandas ==1.5.0
+    - openpyxl
     - networkx
     - lxml
     - requests
-    - chardet
     - iso8601
+    - chardet
     - jinja2
     - beautifulsoup4
     - mzml2isa
     - biopython
     - progressbar2
+    - deepdiff
     - pyyaml
+    - bokeh
+    - certifi ==2021.5.30
+    - flake8 ==3.9.2
+    - ddt >=1.4.2
+    - behave ==1.2.6
+    - httpretty ==1.1.3
+    - sure ==2.0.0
+    - coveralls
+    - rdflib
+    - flask
+    - flask-sqlalchemy
 
 test:
   imports:
     - isatools
     - isatools.convert
     - isatools.create
-    - isatools.errors
     - isatools.io
     - isatools.net
 
 about:
-  home: https://github.com/ISA-tools/isa-api
-  license: CPAL
-  license_family: OTHER
-  summary: Metadata tracking tools help to manage an increasingly diverse set of life science, environmental and biomedical
-    experiments
+  home: https://isa-tools.org/
+  summary: 'Metadata tracking tools help to manage an increasingly diverse set of life science, environmental and biomedical experiments'
+  license: MPL-2.0
+  license_file: LICENSE.txt
+  dev_url: https://github.com/ISA-tools/isa-api
+
+extra:
+  identifiers:
+    - doi:10.1093/gigascience/giab060
diff --git a/recipes/iseq/build.sh b/recipes/iseq/build.sh
new file mode 100644
index 0000000000000..bf1bb28ab19e0
--- /dev/null
+++ b/recipes/iseq/build.sh
@@ -0,0 +1,5 @@
+#!/bin/bash
+
+mkdir -p $PREFIX/bin
+cp $SRC_DIR/bin/iseq $PREFIX/bin
+chmod +x $PREFIX/bin/iseq
diff --git a/recipes/iseq/meta.yaml b/recipes/iseq/meta.yaml
new file mode 100644
index 0000000000000..2d579ced77195
--- /dev/null
+++ b/recipes/iseq/meta.yaml
@@ -0,0 +1,39 @@
+{% set name = "iSeq" %}
+{% set version = "1.0.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/BioOmics/{{ name }}/releases/download/v{{ version }}/{{ name }}-v{{ version }}.tar.gz
+  sha256: a7209fa37eaa95c1beef471a494d82d56bc4313c801d05fb7478cfa3e745a67e
+
+build:
+  noarch: generic
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x") }}
+
+requirements:
+  build:
+    - bash
+  run:
+    - pigz
+    - wget
+    - axel
+    - aspera-cli
+    - sra-tools =2.11.0
+
+test:
+  commands:
+    - iseq --help
+
+about:
+  home: https://github.com/BioOmics/iSeq
+  license: MIT
+  summary: "iSeq is a Bash script that allows you to download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases"
+
+extra:
+  recipe-maintainers:
+    - Haoyu Chao <haoyuchao@zju.edu.cn>
diff --git a/recipes/isocor/meta.yaml b/recipes/isocor/meta.yaml
index 5c03e2d2696ee..5155ad414905e 100644
--- a/recipes/isocor/meta.yaml
+++ b/recipes/isocor/meta.yaml
@@ -1,10 +1,13 @@
+{% set name = "isocor" %}
+{% set version = "2.2.2" %}
+
 package:
-  name: "isocor"
-  version: "2.2.1"
+  name: {{ name|lower }}
+  version: {{ version }}
 
 source:
-  url: https://files.pythonhosted.org/packages/e7/13/00a3753450d1ec9b478da3329ae83f334b8a9b8601aa3e2600a0562ff0c1/IsoCor-2.2.1.tar.gz
-  sha256: 528714817b5672fddd489771baeae1d8372d2529974568aaddfd7e197e8baf8e
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/IsoCor-{{ version }}.tar.gz
+  sha256: eb4c91d2ed5b626adc6208454fd82b3e2ddd9a3ad0ccd964c8f16f9a310673e7
 
 build:
   number: 0
@@ -12,15 +15,17 @@ build:
   entry_points:
     - isocorcli = isocor.ui.isocorcli:start_cli
     - isocor = isocor.ui.isocorgui:start_gui
-  script: python -m pip install . --no-deps --ignore-installed
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
+  run_exports:
+    - {{ pin_subpackage('isocor', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - python >=3.6
+    - python >=3.7
   run:
     - pandas >=0.17.1
-    - python >=3.6
+    - python >=3.7
     - scipy >=0.12.1
     - numpy >=1.15
 
@@ -34,7 +39,7 @@ test:
 
 about:
   home: https://github.com/MetaSys-LISBP/IsoCor/
-  license: GNU General Public v3 or later (GPLv3+)
+  license: GPL-3.0-or-later
   license_family: GPL3
   license_file: LICENSE.md
   summary: A Isotope Correction for mass spectrometry labeling experiments
diff --git a/recipes/isoncorrect/meta.yaml b/recipes/isoncorrect/meta.yaml
index c7da0fa7b5ac7..cd699d5b23099 100644
--- a/recipes/isoncorrect/meta.yaml
+++ b/recipes/isoncorrect/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "isONcorrect" %}
-{% set version = "0.0.8" %}
+{% set version = "0.1.3.5" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,33 +7,39 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: bc1a28d651dbe762c92d2d51c9a9e60679dde0e4ffa6ee4bc49807ca01703183
+  sha256: a05fe9e65392fdefd1bd65ae79317438dee77c36005b2719f9b2c538b4e0e85c
 
 build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . -vv --no-deps --ignore-installed"
+  entry_points:
+    - run_isoncorrect = isoncorrect.run_isoncorrect:main
+    - isONcorrect = isoncorrect.isONcorrect:main
+  run_exports:
+    - {{ pin_subpackage('isoncorrect', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - python >=3
+    - python >=3.4
+    - hatchling
   run:
+    - python >=3.4
     - python-edlib >=1.1.2
     - numpy >=1.16.2
-    - python >=3
+    - parasail-python
 
 test:
   commands:
+    - run_isoncorrect --help
     - isONcorrect --version
-  imports:
-    - modules
 
 about:
   home: "https://github.com/ksahlin/isONcorrect"
-  license: GPL-3.0
+  license: GPL-3.0-or-later
   license_family: GPL
-  license_file: LICENSE
+  license_file: LICENSE.txt
   summary: "De novo error-correction of long-read transcriptome reads."
 
 extra:
diff --git a/recipes/isonform/meta.yaml b/recipes/isonform/meta.yaml
new file mode 100644
index 0000000000000..8ae2d4739eed3
--- /dev/null
+++ b/recipes/isonform/meta.yaml
@@ -0,0 +1,39 @@
+{% set name = "isonform" %}
+{% set version = "0.3.4" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/isONform-{{ version }}.tar.gz
+  sha256: fb96c32e0ce177bf7866b7a19fa6855b1e9fac8f8f164cdccc972e284fbcce47
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("isonform", max_pin="x.x") }}
+
+requirements:
+  host:
+    - python
+    - pip
+  run:
+    - python
+    - recordclass >=0.17.2
+    - networkx >=2.7.1
+    - parasail-python >=1.3.3
+    - edlib >=1.1.2
+    - spoa
+
+test:
+  commands:
+    - isONform_parallel --help
+
+about:
+  home: https://github.com/aljpetri/isONform
+  summary: De novo construction of isoforms from long-read data
+  license: GPL-3.0
+  license_file: LICENSE
diff --git a/recipes/isoquant/build.sh b/recipes/isoquant/build.sh
index 8736b04c39060..47cdaa0e478ac 100644
--- a/recipes/isoquant/build.sh
+++ b/recipes/isoquant/build.sh
@@ -6,4 +6,4 @@ mkdir -p $PREFIX/bin
 chmod a+x *.py
 cp -rp * "$OUTDIR/"
 cd $PREFIX/bin
-ln -s "../${OUTDIR#$PREFIX}"/*.py .
+ln -sf "../${OUTDIR#$PREFIX}"/*.py .
diff --git a/recipes/isoquant/meta.yaml b/recipes/isoquant/meta.yaml
index 9d46f8b5da854..0d7b27eeb72ff 100644
--- a/recipes/isoquant/meta.yaml
+++ b/recipes/isoquant/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "IsoQuant" %}
-{% set version = "3.3.1" %}
-{% set sha256 = "1d0f7d4c3f42f48ab6cd30fef8e743a60032a8c36cee15ed0de4df21c847fde2" %}
+{% set version = "3.4.1" %}
+{% set sha256 = "a2e9d80da36567ab64647b60a919e78c69da7d61d0e9436f1682acada7841485" %}
 
 package:
   name: {{ name | lower }}
@@ -13,19 +13,23 @@ source:
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('isoquant', max_pin='x') }}
 
 requirements:
   run:
-    - python >=3.7
+    - python >=3.8
     - argcomplete >=1.11.1
     - argh >=0.26.2
     - biopython >=1.76
     - gffutils >=0.10.1
     - minimap2 >=2.18
-    - pandas >=1.0
+    - packaging
+    - pandas >=1.0.1
     - pybedtools >=0.8.1
-    - pyfaidx >=0.5.8
+    - pyfaidx >=0.7
     - pysam >=0.15
+    - pyyaml >=5.4
     - samtools >=1.14
     - simplejson >=3.17.0
     - six >=1.14.0
@@ -38,6 +42,14 @@ test:
     - rm -rf isoquant_test
 
 about:
-  summary: IsoQuant is a tool for reference-based analysis of long RNA reads, such as gene/transcript quantification and discovery.
-  home: https://github.com/ablab/IsoQuant
-  license: GPL2
+  summary: "IsoQuant is a tool for reference-based analysis of long RNA reads, such as gene/transcript quantification and discovery."
+  home: "https://github.com/ablab/IsoQuant"
+  license: "GPL-2.0-or-later"
+  license_family: GPL2
+  license_file: LICENSE
+  dev_url: "https://github.com/ablab/IsoQuant"
+  doc_url: "https://github.com/ablab/IsoQuant/blob/master/README.md"
+
+extra:
+  identifiers:
+    - doi:10.1038/s41587-022-01565-y
diff --git a/recipes/isospecpy/meta.yaml b/recipes/isospecpy/meta.yaml
new file mode 100644
index 0000000000000..a162dafa99b55
--- /dev/null
+++ b/recipes/isospecpy/meta.yaml
@@ -0,0 +1,46 @@
+{% set name = "isospecpy" %}
+{% set version = "2.2.2" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/IsoSpecPy-{{ version }}.tar.gz
+  sha256: ca838870d31c4879f7e8d0ff782876858888532b6eb0d501fb9650bf5395578e
+
+build:
+  script: {{ PYTHON }} -m pip install . -vv
+  number: 0
+  run_exports:
+      - {{ pin_subpackage('isospecpy', max_pin="x.x") }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+  host:
+    - python
+    - cffi
+    - pip
+  run:
+    - python
+    - cffi
+
+test:
+  imports:
+    - IsoSpecPy
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: http://matteolacki.github.io/IsoSpec/
+  summary: Python interface to IsoSpec++ isotopic envelope calculator library
+  license: BSD-3-Clause
+  license_file: debian/copyright
+
+extra:
+  recipe-maintainers:
+    - hechth
diff --git a/recipes/itol-config/meta.yaml b/recipes/itol-config/meta.yaml
new file mode 100644
index 0000000000000..069a6ee5a623a
--- /dev/null
+++ b/recipes/itol-config/meta.yaml
@@ -0,0 +1,46 @@
+{% set name = "itol-config" %}
+{% set version = "0.1.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/jodyphelan/itol-config/archive/v{{ version }}.tar.gz
+  sha256: e4fb28eb6c434a7a2c823f0d34b86a483c67a7f139e2c18832d564b9b4555bb6
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - itol-config = itol_config.cli:cli
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  run_exports:
+    - {{ pin_subpackage('itol-config', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.8
+    - flit-core >=3.2,<4
+    - pip
+  run:
+    - python >=3.8
+    - tomli
+
+test:
+  imports:
+    - itol_config
+  commands:
+    - itol-config --help
+
+about:
+  home: https://github.com/jodyphelan/itol-config
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  doc_url: https://jodyphelan.github.io/itol-config/
+  summary: Package to create iTOL config files
+
+extra:
+  recipe-maintainers:
+    - jodyphelan
diff --git a/recipes/itolapi/meta.yaml b/recipes/itolapi/meta.yaml
index 85aed626a0b88..0e664d28481a5 100644
--- a/recipes/itolapi/meta.yaml
+++ b/recipes/itolapi/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "itolapi" %}
-{% set version = "4.1.0" %}
+{% set version = "4.1.4" %}
 
 package:
   name: '{{ name|lower }}'
@@ -7,28 +7,25 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: e52c6ce86ccf8ab6702b8b110543a0d9f8d4eec1f13d5c278e2d1c25e3f7c7f2
+  sha256: 68e87ba51d209da556b0e373b3b0456b644a1a732c193fedbd7785ff37b6a2cb
 
 build:
   noarch: python
   number: 0
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   host:
-    - python>=3.6
+    - python >=3.6
   run:
-    - python>=3.6
+    - python >=3.6
     - requests >=2.0,<3.0
 
 test:
   imports:
     - itolapi
-    - itolapi.tests
-  requires:
-    - codecov >=2.0.9,<3.0.0
-    - coverage >=4.5.0,<5.0.0
-    - mock >=3.0.0,<4.0.0
 
 about:
   home: https://github.com/albertyw/itolapi
diff --git a/recipes/itolparser/meta.yaml b/recipes/itolparser/meta.yaml
index f0e662973d928..5a97dfed5a9c4 100644
--- a/recipes/itolparser/meta.yaml
+++ b/recipes/itolparser/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "itolparser" %}
-{% set version = "0.1.6" %}
+{% set version = "0.2.1" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: ecb810be727d5984d7b7098927f3841e034a25ad6c09f1716ce1956c3ad435e0
+  sha256: 8699adea2caf5ea1c645c5bc1abf4be8aa232a7c6c51f8a1f229c465408b6570
 
 build:
   number: 0
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('itolparser', max_pin="x") }}
 
 requirements:
   host:
@@ -27,14 +29,12 @@ requirements:
 test:
   commands:
     - itolparser -h
-  imports:
-    - itolparser_functions
 
 about:
   home: "https://github.com/boasvdp/itolparser"
   license: MIT
   license_family: MIT
-  license_file: LICENSE 
+  license_file: LICENSE
   summary: "Small script to produce iTOL colorstrip metadata files from a table"
 
 extra:
diff --git a/recipes/itsxpress/meta.yaml b/recipes/itsxpress/meta.yaml
index 05ee7adc18aff..2ecd49b405f60 100644
--- a/recipes/itsxpress/meta.yaml
+++ b/recipes/itsxpress/meta.yaml
@@ -1,8 +1,8 @@
 {% set name = "itsxpress" %}
-{% set version = "2.0.0" %}
+{% set version = "2.1.0" %}
 {% set file_ext = "tar.gz" %}
 {% set hash_type = "sha256" %}
-{% set hash_value = "3306cb809e4b8c69b93a795f0289dbf4b9d8b7ba653f34d94472a62b38f41f6e" %}
+{% set hash_value = "608e5c55526d4c084f8ea552c7bd2d232505ae83751fc517c8ceabb2eb483aed" %}
 
 package:
   name: '{{ name|lower }}'
@@ -17,7 +17,9 @@ build:
   number: 0
   entry_points:
     - itsxpress=itsxpress.main:main
-  script: python -m pip install --no-deps --ignore-installed .
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation . -vvv
+  run_exports:
+    - {{ pin_subpackage('itsxpress', max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/ivar/build.sh b/recipes/ivar/build.sh
index efb9691a31967..ae5ec4a1259df 100644
--- a/recipes/ivar/build.sh
+++ b/recipes/ivar/build.sh
@@ -4,7 +4,7 @@ export CPATH=${PREFIX}/include
 
 ./autogen.sh
 ./configure --prefix=$PREFIX --with-hts=$PREFIX
-make
+make -j${CPU_COUNT}
 # removing this for now as it triggers a build error from -Werror=maybe-uninitialized - pvanheus
 # make check
 make install
diff --git a/recipes/ivar/meta.yaml b/recipes/ivar/meta.yaml
index 9efba2fd8a3f7..fc9fd87e943eb 100644
--- a/recipes/ivar/meta.yaml
+++ b/recipes/ivar/meta.yaml
@@ -10,7 +10,9 @@ source:
   sha256: "{{ sha256 }}"
 
 build:
-  number: 2
+  number: 3
+  run_exports:
+    - {{ pin_subpackage('ivar', max_pin='x') }}
 
 requirements:
   build:
@@ -23,6 +25,7 @@ requirements:
     - pkg-config
   host:
     - htslib
+    - zlib
   run:
     - htslib
     - samtools
@@ -39,6 +42,8 @@ about:
   dev_url: https://github.com/andersen-lab/ivar
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:ivar
     - usegalaxy-eu:ivar_variants
diff --git a/recipes/jaeger-bio/meta.yaml b/recipes/jaeger-bio/meta.yaml
new file mode 100644
index 0000000000000..388ff7957b63e
--- /dev/null
+++ b/recipes/jaeger-bio/meta.yaml
@@ -0,0 +1,62 @@
+{% set name = "jaeger-bio" %}
+{% set version = "1.1.26" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: 7f7d8794cd04185f7787d92a6ccc89fa59bb58acbe0fe929c6bffbee39a90fe4
+
+build:
+  number: 0
+  script: "{{ PYTHON }} -m pip install . --no-cache-dir -vvv"
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage('jaeger-bio', max_pin="x.x.x") }}
+
+requirements:
+  host:
+    - python =3
+    - pip
+  run:
+    - python =3
+    - pip
+    - h5py >=3.8
+    - biopython >=1.78
+    - kneed >=0.8.5
+    - matplotlib-base >=3.7
+    - numpy >=1.24
+    - pandas >=1.5
+    - psutil >=5
+    - ruptures >=1.1.9
+    - scikit-learn ==1.3.2
+    - seaborn >=0.12.2
+    - tqdm >=4.64.0
+    - tensorflow >=2.15,<2.16
+    - parasail-python >=1.3.4
+
+test:
+  imports:
+    - jaegeraa
+    - jaegeraa.data
+    - jaegeraa.nnlib
+
+  commands:
+    - Jaeger --help
+
+about:
+  home: "https://github.com/Yasas1994/Jaeger"
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "A quick and precise pipeline for detecting phages in sequence assemblies."
+  dev_url: https://github.com/Yasas1994/Jaeger
+  doc_url: https://readthedocs.org/projects/jaeger-docs/
+
+extra:
+  identifiers:
+    - biotools:jaeger
+  recipe-maintainers:
+    - Yasas1994
diff --git a/recipes/jalview/build.sh b/recipes/jalview/build.sh
old mode 100644
new mode 100755
index 3dc643c4f5b51..cb17e2ed52032
--- a/recipes/jalview/build.sh
+++ b/recipes/jalview/build.sh
@@ -21,6 +21,12 @@ gradle -PJAVA_VERSION=11 -PINSTALLATION="bioconda (build $PKG_BUILDNUM)" -PJALVI
 # copy jalview jar to target
 cp -vR build/libs/jalview-all-$PKG_VERSION-j11.jar $JALVIEWDIR/jalview-all-j11.jar
 
+# copy jalview logo to target
+LOGO=$SRC_DIR/utils/channels/release/images/jalview_logo.png
+if [ -e "$LOGO" ]; then
+  cp "$LOGO" $JALVIEWDIR/jalview_logo.png
+fi
+
 # copy wrapper and make executable
 cp $RECIPE_DIR/jalview.sh $JALVIEWDIR/.
 chmod +x $JALVIEWDIR/jalview.sh;
diff --git a/recipes/jalview/jalview.sh b/recipes/jalview/jalview.sh
old mode 100644
new mode 100755
index 9c2daa1582bdc..9ac28075bc3ce
--- a/recipes/jalview/jalview.sh
+++ b/recipes/jalview/jalview.sh
@@ -3,49 +3,197 @@
 ###############################
 # Wrapper for Jalview
 #
-# Note, in order to run commandline-only calls use 
-#   -nodisplay
+# 2023-08-16 Jalview 2.11.3.0 has new command line arguments
+# Old command line arguments are currently detected and actioned
+# but are no longer supported and will be removed at a later date.
+#
+# See
+#   Jalview -> Help -> Documentation -> Command Line -> introduction and reference
+# or
+#   https://www.jalview.org/help/html/features/clarguments.html
+# for details of the new command line arguments.
+#
+# Note, in order to run commandline-only calls use
+#   --headless
 #
 # By default, this wrapper executes java -version to determine the JRE version
-# Set JALVIEW_JRE=j1.8 or JALVIEW_JRE=j11 to skip the version check 
+# Set JALVIEW_JRE=j1.8 or JALVIEW_JRE=j11 to skip the version check.
 #
 # By default, this wrapper does NOT restrict the memory consumption of Jalview.
 # Set eg. JALVIEW_MAXMEM=1g to set the maximal memory of Jalview's VM
 #
+# This script is maintained in the Jalview repository in utils/conda/jalview.sh
 ###############################
 
-# ARG1 saved to check whether we need "-open" later
-ARG1=$1
+declare -a ARGS=("${@}")
+
+# this function is because there's no readlink -f in Darwin/macOS
+function readlinkf() {
+  FINDFILE="$1"
+  FILE="${FINDFILE}"
+  PREVFILE=""
+  C=0
+  MAX=100 # just in case we end up in a loop
+  FOUND=0
+  while [ "${C}" -lt "${MAX}" -a "${FILE}" != "${PREVFILE}" -a "${FOUND}" -ne 1 ]; do
+    PREVFILE="${FILE}"
+    FILE="$(readlink "${FILE}")"
+    if [ -z "${FILE}" ]; then
+      # the readlink is empty means we've arrived at the script, let's canonicalize with pwd
+      FILE="$(cd "$(dirname "${PREVFILE}")" &> /dev/null && pwd -P)"/"$(basename "${PREVFILE}")"
+      FOUND=1
+    elif [ "${FILE#/}" = "${FILE}" ]; then
+      # FILE is not an absolute path link, we need to add the relative path to the previous dir
+      FILE="$(dirname "${PREVFILE}")/${FILE}"
+    fi
+    C=$((C+1))
+  done
+  if [ "${FOUND}" -ne 1 ]; then
+    echo "Could not determine path to actual file '$(basename "${FINDFILE}")'" >&2
+    exit 1
+  fi
+  echo "${FILE}"
+}
+
+ISMACOS=0
+if [ "$( uname -s )" = "Darwin" ]; then
+  ISMACOS=1
+fi
 
-# Find original directory of bash script, resolving symlinks
-# http://stackoverflow.com/questions/59895/can-a-bash-script-tell-what-directory-its-stored-in/246128#246128
-SOURCE="${BASH_SOURCE[0]}"
-while [ -h "$SOURCE" ]; do # resolve $SOURCE until the file is no longer a symlink
-    DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
-    SOURCE="$(readlink "$SOURCE")"
-    [[ $SOURCE != /* ]] && SOURCE="$DIR/$SOURCE" # if $SOURCE was a relative symlink, we need to resolve it relative to the path where the symlink file was located
+# check for headless mode
+HEADLESS=0
+GUI=0
+HELP=0
+DEBUG=0
+for RAWARG in "${@}"; do
+  ARG="${RAWARG%%=*}"
+  case "${ARG}" in
+    --headless|--output|--image|--structureimage)
+      HEADLESS=1
+      ;;
+    --help|--help-*|--version|-h)
+      HELP=1
+      ;;
+    --gui)
+      GUI=1
+      ;;
+    --debug)
+      DEBUG=1
+      ;;
+  esac
+  
+  if [ "${HELP}" = 1 ]; then
+    # --help takes precedence
+    HEADLESS=1
+    GUI=0
+  elif [ "${GUI}" = 1 ]; then
+    # --gui takes precedence over --headless
+    HEADLESS=0
+  fi
 done
-DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"; # get final path of this script
+
+declare -a JVMARGS=()
+
+# set vars for being inside the macos App Bundle
+if [ "${ISMACOS}" = 1 ]; then
+# MACOS ONLY
+  DIR="$(dirname "$(readlinkf "$0")")"
+  if [ -e "${DIR}/jalview_logo.png" ]; then
+    JVMARGS=( "${JVMARGS[@]}" "-Xdock:icon=${DIR}/jalview_logo.png" )
+  fi
+else
+# NOT MACOS
+  DIR="$(dirname "$(readlink -f "$0")")"
+fi
+
+if [ "${HEADLESS}" = 1 ]; then
+  # not setting java.awt.headless in java invocation of running jalview due to problem with Jmol
+  if [ "${HELP}" = 1 ]; then
+    JVMARGS=( "${JVMARGS[@]}" "-Djava.awt.headless=true" )
+  fi
+  # this suppresses the Java icon appearing in the macOS Dock
+  if [ "${ISMACOS}" = 1 ]; then
+    JVMARGS=( "${JVMARGS[@]}" "-Dapple.awt.UIElement=true" )
+  fi
+fi
+
+JAVA=java
 
 # decide which jalview jar to launch - either 'j11' or 'j1.8'
 if [[ "$JALVIEW_JRE" != "j11" && "$JALVIEW_JRE" != "j1.8" ]]; then
   JALVIEW_JRE="j11"
   # if java 8 is installed we pick the j1.8 build
-  if [[ $( java -version 2>&1 | grep '"1.8' ) != "" ]]; then JALVIEW_JRE=j1.8; fi
+  if [[ $( "${JAVA}" -version 2>&1 | grep '"1.8' ) != "" ]]; then
+    JALVIEW_JRE="j1.8"
+  fi
 fi
 
+JARPATH="${DIR}/jalview-all-${JALVIEW_JRE}.jar"
+
 # check if memory maximum is set and if so forward to java-based jalview call
-if [ -z "$JALVIEW_MAXMEM" ]; then
-  VMMAXMEM=""
-else
-  VMMAXMEM="-Xmx${JALVIEW_MAXMEM}"
+if [ \! -z "$JALVIEW_MAXMEM" ]; then
+  JVMARGS=( "${JVMARGS[@]}" "-Xmx${JALVIEW_MAXMEM}" )
+fi
+
+# WINDOWS ONLY (Cygwin or WSL)
+# change paths for Cygwin or Windows Subsystem for Linux (WSL)
+if [ "${ISMACOS}" != 1 ]; then # older macos doesn't like uname -o, best to avoid
+  if [ "$(uname -o)" = "Cygwin" ]; then
+  # CYGWIN
+    JARPATH="$(cygpath -pw "${JARPATH}")"
+    # now for some arg paths fun. only translating paths starting with './', '../', '/' or '~'
+    ARGS=()
+    for ARG in "${@}"; do
+      if [ "${ARG}" != "${ARG#@(/|./|../|~)}" ]; then
+        ARGS=( "${ARGS[@]}" "$(cygpath -aw "${ARG}")" )
+      else
+        ARGS=( "${ARGS[@]}" "${ARG}" )
+      fi
+    done
+  elif uname -r | grep -i microsoft | grep -i wsl >/dev/null; then
+  # WSL
+    JARPATH="$(wslpath -aw "${JARPATH}")"
+    ARGS=()
+    for ARG in "${@}"; do
+      if [ "${ARG}" != "${ARG#@(/|./|../|~)}" ]; then
+        # annoyingly wslpath does not work if the file doesn't exist!
+        ARGBASENAME="$(basename "${ARG}")"
+        ARGDIRNAME="$(dirname "${ARG}")"
+        ARGS=( "${ARGS[@]}" "$(wslpath -aw "${ARGDIRNAME}")\\${ARGBASENAME}" )
+      else
+        ARGS=( "${ARGS[@]}" "${ARG}" )
+      fi
+    done
+    JAVA="${JAVA}.exe"
+  fi
+fi
+
+# get console width -- three ways to try, just in case
+if command -v tput 2>&1 >/dev/null; then
+  COLUMNS=$(tput cols) 2>/dev/null
+elif command -v stty 2>&1 >/dev/null; then
+  COLUMNS=$(stty size | cut -d" " -f2) 2>/dev/null
+elif command -v resize 2>&1 >/dev/null; then
+  COLUMNS=$(resize -u | grep COLUMNS= | sed -e 's/.*=//;s/;//') 2>/dev/null
 fi
+JVMARGS=( "${JVMARGS[@]}" "-DCONSOLEWIDTH=${COLUMNS}" )
+
+function quotearray() {
+  QUOTEDVALS=""
+  for VAL in "${@}"; do
+    if [ \! "$QUOTEDVALS" = "" ]; then
+      QUOTEDVALS="${QUOTEDVALS} "
+    fi
+    QUOTEDVALS="${QUOTEDVALS}\"${VAL}\""
+  done
+  echo $QUOTEDVALS
+}
+
+JVMARGSSTR=$(quotearray "${JVMARGS[@]}")
+ARGSSTR=$(quotearray "${ARGS[@]}")
 
-# check to see if $1 is set and is not start of other cli set args
-OPEN=""
-if [ -n "$ARG1" -a "$ARG1" = "${ARG1#-}" ]; then
- # first argument exists and does not start with a "-"
- OPEN="-open"
+if [ "${DEBUG}" = 1 ]; then
+ echo Shell running: \""${JAVA}"\" ${JVMARGSSTR} -jar \""${JARPATH}"\" ${ARGSSTR}
 fi
 
-java $VMMAXMEM -jar $DIR/jalview-all-${JALVIEW_JRE}.jar $OPEN ${@};
+"${JAVA}" "${JVMARGS[@]}" -jar "${JARPATH}" "${ARGS[@]}"
diff --git a/recipes/jalview/meta.yaml b/recipes/jalview/meta.yaml
index 9ec707316543b..54db0fb5834b3 100644
--- a/recipes/jalview/meta.yaml
+++ b/recipes/jalview/meta.yaml
@@ -1,36 +1,38 @@
-{% set version = "2.11.2.6" %}
+{% set name = "jalview" %}
+{% set version = "2.11.3.3" %}
 
 package:
-  name: jalview
+  name: {{ name|lower }}
   version: {{ version }}
 
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage( name, max_pin="x.x") }}
 
 source:
   url: https://www.jalview.org/source/jalview_{{ version|replace(".", "_") }}.tar.gz
-  sha256: "46dfd32ad5a1a0c92b4f9de801cdb56eb60b32d0cf4d9c16229521ab2f10f92d"
+  sha256: "e41bcbb8d8e46eaed125f5bdac9f16ef443a804bb5b6c1310abd9489a862fa79"
 
 requirements:
   build:
     - make
-    - gradle >7.4
-    # jalview 2.11 series requires Java 11 or greater to build.
+    - gradle >7.4,<8
+    # jalview 2.11 series requires Java 11 to build.
     - openjdk 11
     - xorg-libxtst
   run:
-    # Jalview 2.11.1.4 can run as 1.8 or java 11+
+    # Jalview 2.11.* can run as 1.8/8 or java 11
     # Version number reference: https://github.com/conda/conda/issues/6948#issuecomment-369360906
     # A bug with OpenJDK 11.0.9.1+1 makes Jalview crash on macOS. Fixed with later versions of OpenJDK.
-    - openjdk >=8.0.192,!=11.0.9.*,<12 # [osx]
-    - openjdk >=8.0.192,<12 # [not osx]
+    - openjdk >=8.0.192,!=9.*,!=10.*,!=11.0.9.*,<12
     - xorg-libxtst
     - psutil
 
 test:
   commands:
-    - jalview -help
+    - jalview --help
 
 
 about:
@@ -43,11 +45,13 @@ about:
     Use it to view and edit sequence alignments, analyse them with phylogenetic trees and principal
     components analysis (PCA) plots and explore molecular structures and annotation. It is also able
     to import and annotate DNA and Protein products from VCF files and retrieve data and annotation from
-    Uniprot, Ensembl, ENA, Rfam, Pfam and the PDBe.
+    3D-Beacons, Uniprot, Ensembl, ENA, Rfam, Pfam and the PDBe.
 
 extra:
   notes: |
-    This wrapper and installation is primarily for commandline-only use.
+    This wrapper and installation is primarily for commandline use.
     Set JALVIEW_JRE=j1.8 or JALVIEW_JRE=j11 to specify the java runtime if you need jalview to start up as quickly as possible
     Set JALVIEW_MAXMEM=2g to restrict jalviews maximal memory consumption (here to 2G RAM). Otherwise 90% of physical memory
-    (capped at 32G) is allocated.  Memory allocation can now also be set in Tools->Preferences->Startup.
+    (capped at 32G) is allocated.  Memory allocation can also be set in Tools->Preferences->Startup or specified with command-
+    line arguments --jvmmempc=90 (percentage of total physical memory, default 90) and --jvmmemmax=2g (set a different cap,
+    default 32G if total physical memory can be detected or 8G if total physical memory cannot be detected).
diff --git a/recipes/jass/meta.yaml b/recipes/jass/meta.yaml
index 32f687595af23..a9d420781c8d8 100644
--- a/recipes/jass/meta.yaml
+++ b/recipes/jass/meta.yaml
@@ -1,7 +1,7 @@
 {% set name = "jass" %}
-{% set version = "2.2" %}
+{% set version = "2.3" %}
 {% set owner = "statistical-genetics" %}
-{% set sha256 = "06fa6b4decf210da91f7d6eaa60e436983843203bdeb04bb40581f9464325936" %}
+{% set sha256 = "799731c3de8301f610402af17ed0dfda54e6cdd18e59cd8ce16ee26d5a9b9f22" %}
 
 package:
   name: {{ name }}
@@ -17,10 +17,12 @@ build:
     - jass=jass.__main__:main
   number: 0
   script: {{ PYTHON }} -m pip install --no-deps --ignore-installed -vv .
+  run_exports:
+    - {{ pin_subpackage('jass', max_pin="x.x") }}
 
 requirements:
   host:
-    - python >=3
+    - python >=3.10
     - setuptools
     - flask-smorest
     - aiohttp
@@ -36,17 +38,82 @@ requirements:
     - pytest-runner
     - setuptools
   run:
-    - python >=3
-    - flask-smorest
+    - python >=3.10
     - aiohttp
-    - python-dateutil
+    - aiosignal
+    - amqp
+    - anyio
+    - apispec
+    - async-timeout
+    - attrs
+    - billiard
+    - blinker
+    - blosc
+    - celery
+    - certifi
+    - charset-normalizer
+    - click
+    - click-didyoumean
+    - click-plugins
+    - click-repl
+    - contourpy
+    - cycler
+    - exceptiongroup
+    - fastapi
+    - Flask
+    - Flask-Cors
+    - flask-smorest
+    - fonttools
+    - frozenlist
+    - h11
+    - httpcore
+    - httptools
+    - httpx
+    - idna
+    - importlib-metadata
+    - itsdangerous
+    - Jinja2
+    - kiwisolver
+    - kombu
+    - MarkupSafe
+    - marshmallow
+    - matplotlib-base
+    - msgpack-python
+    - multidict
+    - ndindex
+    - numexpr
     - numpy
+    - packaging
     - pandas
-    - pytables
-    - h5py
+    - Pillow
+    - prompt-toolkit
+    - py-cpuinfo
+    - pydantic <2.0
+    - pyparsing
+    - python-dateutil
+    - python-dotenv
+    - pytz
+    - PyYAML
+    - requests
     - scipy
-    - matplotlib-base
-    - celery
+    - seaborn
+    - six
+    - sniffio
+    - starlette
+    - tables
+    - typing_extensions
+    - tzdata
+    - urllib3
+    - uvicorn
+    - uvloop
+    - vine
+    - watchfiles
+    - wcwidth
+    - webargs
+    - websockets
+    - Werkzeug
+    - yarl
+    - zipp
 
 test:
   commands:
diff --git a/recipes/jbrowse2/meta.yaml b/recipes/jbrowse2/meta.yaml
index d1c1a972be05e..9b2fbfc73ea62 100644
--- a/recipes/jbrowse2/meta.yaml
+++ b/recipes/jbrowse2/meta.yaml
@@ -1,17 +1,19 @@
 # When updating, check the @jbrowse/cli version in build.sh too
-{% set version = "2.6.2" %}
+{% set version = "2.11.1" %}
 
 package:
   name: jbrowse2
   version: {{ version }}
 
 source:
-  sha256: 3de6b69d390047e8bc62829983ea3d48cf3b47e7e1e289c9707ba173b561ec48
+  sha256: 1d438d8dceea3403a0470fb0c0b2c4bdf8778b2b76973605984bbe09d6175361
   url: https://github.com/GMOD/jbrowse-components/releases/download/v{{ version }}/jbrowse-web-v{{ version }}.zip
 
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('jbrowse2', max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/jcvi/meta.yaml b/recipes/jcvi/meta.yaml
index c8e44fd835b64..182269b6c3e2d 100644
--- a/recipes/jcvi/meta.yaml
+++ b/recipes/jcvi/meta.yaml
@@ -1,18 +1,22 @@
 {% set name = "jcvi" %}
-{% set version = "1.3.6" %}
+{% set version = "1.4.11" %}
 
 package:
-  name: '{{ name|lower }}'
-  version: '{{ version }}'
+  name: {{ name }}
+  version: {{ version }}
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 1a85c4f2733c2bc4af16380625070b683a05034d9c3c3c00a387509eb09f1b48
+  sha256: 7f9090d1218cbe2bfe05fdaccdcf1c813e86bc8da6e7ac37330172a70fb3364f
 
 build:
-  skip: True  # [py2k or osx]
+  skip: True  # [osx]
   number: 0
-  script: {{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv
+  script_env:
+    - SETUPTOOLS_SCM_PRETEND_VERSION={{ version }}
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   build:
@@ -20,8 +24,9 @@ requirements:
   host:
     - python
     - pip
-    - numpy 
+    - setuptools-scm
     - cython
+    - numpy
   run:
     - python
     - biopython
@@ -37,20 +42,16 @@ requirements:
     - matplotlib-base
     - natsort
     - networkx
-    - numpy
+    - {{ pin_compatible('numpy') }}
     - pypdf2
     - more-itertools
-    - r-ggplot2
     - last
+    - r-ggplot2
     - r-tinytex
-    #- pytest
-    #- pytest-benchmark
-    #- pytest-cov
     - pyyaml
     - rich
     - scipy
     - seaborn-base
-    #- texlive-core
     - ucsc-liftover
 
 test:
@@ -69,11 +70,18 @@ test:
     - jcvi.variation
   #This fails for some unknown reason, even though it's outputting "JCVI utility libraries"
   #commands:
-  #  - "python -m jcvi.apps 2>&1 | grep 'JCVI utility libraries'"
+  #  - 'python -m jcvi.apps 2>&1 | grep "JCVI utility libraries"'
 
 about:
-  home: http://github.com/tanghaibao/jcvi
+  home: "https://github.com/tanghaibao/jcvi"
   license: BSD-2-Clause
   license_family: BSD
-  summary: Python utility libraries on genome assembly, annotation and comparative genomics
+  license_file: LICENSE
+  summary: "Python utility libraries on genome assembly, annotation, and comparative genomics"
   description: "JCVI utility libraries"
+  dev_url: "https://github.com/tanghaibao/jcvi"
+  doc_url: "https://github.com/tanghaibao/jcvi/wiki"
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/jgoslin/meta.yaml b/recipes/jgoslin/meta.yaml
index 9f84d3fbf5cea..60d90ac4ae819 100644
--- a/recipes/jgoslin/meta.yaml
+++ b/recipes/jgoslin/meta.yaml
@@ -1,6 +1,6 @@
 # Do not forget to update the version string in the jgoslin.py file
 {% set name = "jgoslin" %}
-{% set version = "2.0.2" %}
+{% set version = "2.2.0" %}
 
 package:
   name: jgoslin
@@ -9,10 +9,12 @@ package:
 build:
   number: 0 
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('jgoslin', max_pin="x") }}
 
 source:
-  url: https://repo1.maven.org/maven2/org/lifs-tools/jgoslin-cli/2.0.2/{{ name }}-cli-{{ version }}-bin.zip
-  sha256: cb6950bbcb68074acf65cfd875807684a9fd818811a7b1c8e4acbab1ae947751
+  url: https://repo1.maven.org/maven2/org/lifs-tools/jgoslin-cli/2.2.0/{{ name }}-cli-{{ version }}-bin.zip
+  sha256: 0228017d3efaf09d27f3240fdda2b82a5a4c2f4327ac04367803caa06fb26192
 
 requirements:
   run:
diff --git a/recipes/jms-metabolite-services/meta.yaml b/recipes/jms-metabolite-services/meta.yaml
new file mode 100644
index 0000000000000..07ecbf6f80219
--- /dev/null
+++ b/recipes/jms-metabolite-services/meta.yaml
@@ -0,0 +1,44 @@
+{% set name = "jms-metabolite-services" %}
+{% set version = "0.5.7" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/jms-metabolite-services-{{ version }}.tar.gz
+  sha256: 39cad5a790ebd876ecce7f093769fb7495bbb44e74953c428d81055e5f7feac9
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv
+  number: 0
+  run_exports:
+      - {{ pin_subpackage('jms-metabolite-services', max_pin="x.x") }}
+
+
+requirements:
+  host:
+    - python >=3.0
+    - pip
+  run:
+    - python >=3.0
+    - mass2chem
+
+test:
+  imports:
+    - jms
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/shuzhao-li/JMS
+  summary: conversion, search of metabolic models and metabolomics data
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - hechth
diff --git a/recipes/jolytree/meta.yaml b/recipes/jolytree/meta.yaml
index 5e7a9410d0d4a..ba38a2d116e19 100644
--- a/recipes/jolytree/meta.yaml
+++ b/recipes/jolytree/meta.yaml
@@ -1,7 +1,7 @@
 {% set name = "JolyTree" %}
-{% set version = "1.1b" %}
+{% set version = "2.1" %}
 {% set owner = "GIPhy" %}
-{% set sha256 = "e356c18d933f23bca900b6a620d6364bdbf0c39e7aeea2241f63f906fbc015ac" %}
+{% set sha256 = "e3af4675c564e7d77bc104ae63f473dd1cdd7be6a82c883db70e7599acfb763b" %}
 
 package:
   name: {{ name|lower }}
@@ -13,14 +13,16 @@ source:
 
 build:
   noarch: generic
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("jolytree", max_pin="x") }}
 
 requirements:
   run:
     - mash >=1.0.2
     - gawk >=4.1.3
     - fastme >=2.1.5
-    - req >=v1.3.190304ac
+    - req >=1.2
 
 test:
   commands:
diff --git a/recipes/jronn/build.gradle b/recipes/jronn/build.gradle
new file mode 100644
index 0000000000000..a205cea7dbc3d
--- /dev/null
+++ b/recipes/jronn/build.gradle
@@ -0,0 +1,26 @@
+plugins {
+  id "java"
+}
+
+version = "$System.env.PKG_VERSION"
+sourceCompatibility = 11
+
+repositories {
+  mavenCentral()
+}
+
+dependencies {
+  implementation "org.biojava:biojava-protein-disorder:$System.env.PKG_VERSION"
+}
+
+jar {
+  manifest {
+    attributes "Main-Class": "org.biojava.nbio.ronn.ORonn"
+  }
+
+  archiveBaseName = "jronn"
+  duplicatesStrategy = DuplicatesStrategy.EXCLUDE
+  from {
+    configurations.runtimeClasspath.collect { it.isDirectory() ? it : zipTree(it) }
+  }
+}
diff --git a/recipes/jronn/build.sh b/recipes/jronn/build.sh
new file mode 100644
index 0000000000000..e91ffbeb416a5
--- /dev/null
+++ b/recipes/jronn/build.sh
@@ -0,0 +1,12 @@
+#!/bin/bash
+set -eu
+
+OUTDIR=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
+mkdir -p $OUTDIR
+mkdir -p $PREFIX/bin
+
+PKG_VERSION="$PKG_VERSION" gradle jar
+cp build/libs/jronn-$PKG_VERSION.jar $OUTDIR/
+sed "s/{{PKG_VERSION}}/$PKG_VERSION/" $RECIPE_DIR/jronn.sh > $OUTDIR/jronn
+ln -s $OUTDIR/jronn $PREFIX/bin/jronn
+chmod +x $PREFIX/bin/jronn
diff --git a/recipes/jronn/jronn.sh b/recipes/jronn/jronn.sh
new file mode 100644
index 0000000000000..e0be794a48630
--- /dev/null
+++ b/recipes/jronn/jronn.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+set -e
+
+JAR_NAME="jronn-{{PKG_VERSION}}.jar"
+
+if [ -x "$JAVA_HOME/bin/java" ]; then
+  JAVA=$JAVA_HOME/bin/java
+else
+  JAVA=$(which java)
+fi
+$JAVA -jar "$(dirname $(readlink -f "$0"))/$JAR_NAME" "$@"
diff --git a/recipes/jronn/meta.yaml b/recipes/jronn/meta.yaml
new file mode 100644
index 0000000000000..3e5f84db816be
--- /dev/null
+++ b/recipes/jronn/meta.yaml
@@ -0,0 +1,54 @@
+# no need to update version anywhere else
+{% set version="7.1.0" %}
+
+package:
+  name: jronn
+  version: {{ version }}
+
+build:
+  number: 1
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage('jronn', max_pin="x.x") }}
+
+source:
+  path: "./build.gradle"
+  sha256: b554e160a0f7b40a528d2c85c2d9a2e943d42150381ea9290a1df4a2ef0efc91
+
+requirements:
+  build:
+    - gradle =7.4
+  host:
+    - openjdk >=11,<18
+  run:
+    - openjdk >=11
+
+test:
+  commands:
+    - jronn 2>&1 | grep "JRONN version 3.1"
+
+about:
+  home: https://biojava.org/
+  dev_url: https://github.com/biojava/biojava/tree/master/biojava-protein-disorder
+  license: LGPL-2.1
+  summary: "JRONN is based on the C implementation of RONN algorithm."
+  description: >-
+    JRONN is a Java implementation of RONN. JRONN is based on RONN and uses the
+    same model data, therefore gives the same predictions. Main motivation
+    behind JRONN development was providing an implementation of RONN more
+    suitable to use by the automated analysis pipelines and web services.
+    
+    Original version of RONN is described in Yang,Z.R., Thomson,R.,
+    McMeil,P. and Esnouf,R.M. (2005) RONN: the bio-basis function neural network
+    technique applied to the detection of natively disordered regions in proteins
+    Bioinformatics 21: 3369-3376
+    See also http://www.strubi.ox.ac.uk/RONN
+
+extra:
+  notes:
+    JRONN is a Java program that comes with a custom wrapper shell script.
+    The shell wrapper is called "jronn" and is present on $PATH by default.
+    The Java program is executed by jvm pointed to by the $JAVA_HOME variable.
+    Otherwise, a "java" program from the current environment is used.
+  identifiers:
+    - biotools:protein-disorder
diff --git a/recipes/jvarkit/build.sh b/recipes/jvarkit/build.sh
new file mode 100644
index 0000000000000..5a62c80c6f2da
--- /dev/null
+++ b/recipes/jvarkit/build.sh
@@ -0,0 +1,40 @@
+#! /usr/bin/env bash
+
+export LC_ALL=en_US.UTF-8
+
+# compile jars uising condaforge's gradle
+gradle jvarkit
+
+
+# setup directories
+TGT="${PREFIX}/share/${PKG_NAME}-${PKG_VERSION}-${PKG_BUILDNUM}"
+[ -d "${TGT}" ] || mkdir -p "${TGT}"
+[ -d "${PREFIX}/bin" ] || mkdir -p "${PREFIX}/bin"
+
+# jars
+cp -p dist/*.jar "${TGT}"
+
+# wrapper(s)
+cp "${RECIPE_DIR}/${PKG_NAME}.sh" "${TGT}/${PKG_NAME}"
+chmod 0755 "${TGT}/${PKG_NAME}"
+# NOTE on older mac osx, use coreutils for realpath
+ln -s "$(realpath --relative-to "${PREFIX}/bin" "${TGT}/${PKG_NAME}")" "${PREFIX}/bin/${PKG_NAME}"
+
+# more wrapper
+cp "${RECIPE_DIR}/dispatcher.sh" "${TGT}/dispatcher"
+chmod 0755 "${TGT}/dispatcher"
+#
+# Parse the subcommand help table with awk:
+# |                      Name | Description                                                                                            |
+# |---------------------------+--------------------------------------------------------------------------------------------------------|
+# |       addlinearindextobed | Use a Sequence dictionary to create a linear index for a BED file. Can be used as a X-Axis for a chart.|
+# |                backlocate | Mapping a mutation on a protein back to the genome.                                                    |
+# |            bam2haplotypes | Reconstruct SNP haplotypes from reads                                                                  |
+# |                bam2raster | BAM to raster graphics                                                                                 |
+# |                   bam2sql | Convert a SAM/BAM to sqlite statements                                                                 |
+# |                   bam2svg | BAM to Scalar Vector Graphics (SVG)                                                                    |
+# |                   bam2xml | converts a BAM to XML                                                                                  |
+#  …
+java -jar dist/jvarkit.jar --help | awk 'BEGIN{FS="|"};$2~/-+\+-+/&&!$1{++on;next};on&&$2&&!$1{print $2}' | while read -r cmd; do
+	ln -s "$(realpath --relative-to "${PREFIX}/bin" "${TGT}/dispatcher")" "${PREFIX}/bin/${cmd}"
+done
diff --git a/recipes/jvarkit/dispatcher.sh b/recipes/jvarkit/dispatcher.sh
new file mode 100644
index 0000000000000..61d482b6cca83
--- /dev/null
+++ b/recipes/jvarkit/dispatcher.sh
@@ -0,0 +1,6 @@
+#!/bin/bash
+
+DIR="$( cd -P "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
+CMD="$( basename "$0" )"
+
+exec "${DIR:+${DIR}/}jvarkit" "${CMD}" "$@"
diff --git a/recipes/jvarkit/jvarkit.sh b/recipes/jvarkit/jvarkit.sh
new file mode 100755
index 0000000000000..9cf497d070166
--- /dev/null
+++ b/recipes/jvarkit/jvarkit.sh
@@ -0,0 +1,80 @@
+#!/bin/bash
+#
+# Wraps jvarkit.jar
+#
+# This is adapted from picard's wrapper
+#
+set -eu -o pipefail
+
+export LC_ALL=en_US.UTF-8
+
+default_jvm_mem_opts="-Xms512m -Xmx2g"
+jar_file="jvarkit.jar"
+
+# Find original directory of bash script, resolving symlinks
+# http://stackoverflow.com/questions/59895/can-a-bash-script-tell-what-directory-its-stored-in/246128#246128
+# NOTE no "realpath" on older max osx
+SOURCE="${BASH_SOURCE[0]}"
+while [ -h "$SOURCE" ]; do # resolve $SOURCE until the file is no longer a symlink
+	DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
+	SOURCE="$(readlink "$SOURCE")"
+	[[ $SOURCE != /* ]] && SOURCE="$DIR/$SOURCE" # if $SOURCE was a relative symlink, we need to resolve it relative to the path where the symlink file was located
+done
+DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
+
+JAR_DIR="$DIR"
+ENV_PREFIX="$(dirname "$(dirname "${DIR}")")"
+# Use Java installed with conda to ensure correct version
+java="$ENV_PREFIX/bin/java"
+
+### NOTE: always force the conda-installed java version
+# # if JAVA_HOME is set (non-empty), use it. Otherwise keep "java"
+#if [ -n "${JAVA_HOME:=}" ]; then
+#	if [ -e "$JAVA_HOME/bin/java" ]; then
+#		java="$JAVA_HOME/bin/java"
+#	fi
+#fi
+###
+
+# extract memory and system property Java arguments from the list of provided arguments
+# http://java.dzone.com/articles/better-java-shell-script
+jvm_mem_opts=""
+jvm_prop_opts=""
+pass_args=""
+for arg in "$@"; do
+	case $arg in
+		'-D'*)
+			jvm_prop_opts="$jvm_prop_opts $arg"
+			;;
+		'-XX'*)
+			jvm_prop_opts="$jvm_prop_opts $arg"
+			;;
+		'-Xm'*)
+			jvm_mem_opts="$jvm_mem_opts $arg"
+			;;
+		*)
+			if [[ ${pass_args} == '' ]] #needed to avoid preceeding space on first arg e.g. ' MarkDuplicates'
+				then
+					pass_args="$arg"
+			else
+					pass_args="$pass_args \"$arg\"" #quotes later arguments to avoid problem with ()s in MarkDuplicates regex arg
+			fi
+			;;
+	esac
+done
+
+if [ "$jvm_mem_opts" == "" ] && [ -z ${_JAVA_OPTIONS+x} ]; then
+	jvm_mem_opts="$default_jvm_mem_opts"
+fi
+
+# shellcheck disable=SC2206
+pass_arr=($pass_args)
+if [[ ${pass_arr[0]:=} == com* ]]
+then
+	# shellcheck disable=SC2086
+	eval set -- $jvm_mem_opts $jvm_prop_opts -cp "$JAR_DIR/$jar_file" $pass_args
+else
+	# shellcheck disable=SC2086
+	eval set -- $jvm_mem_opts $jvm_prop_opts -jar "$JAR_DIR/$jar_file" $pass_args
+fi
+exec "$java" "$@"
diff --git a/recipes/jvarkit/meta.yaml b/recipes/jvarkit/meta.yaml
new file mode 100644
index 0000000000000..2df572a94b08a
--- /dev/null
+++ b/recipes/jvarkit/meta.yaml
@@ -0,0 +1,54 @@
+{% set name = "jvarkit" %}
+{% set version = "2024.04.20" %}
+{% set sha256 = "e4bb5ad1d8743cccc2a94af2ea6f17e883c3ec5e6674d9dcd3162a84b7de9d45" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/lindenb/{{ name|lower }}/archive/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  noarch: generic
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin=None) }}
+    # it's date based (yyyy.mm.dd) there's no real semantic pinning, and breaking changes happen (e.g.: tools / libraries being removed)
+
+requirements:
+  host:
+    - openjdk >=11,<20
+    - gradle >=7.4,<8
+    # for realpath on older mac osx:
+    - coreutils # [not linux]
+    - gawk
+  run:
+    - openjdk >=11
+
+test:
+  commands:
+    - jvarkit --help
+    - biostar154220 --help
+
+about:
+  home: https://github.com/lindenb/jvarkit
+  summary: 'Java utilities for Bioinformatics.'
+  license: MIT License
+  license_family: MIT
+  license_file: LICENSE.txt
+
+extra:
+  notes:
+    jvarkit is Java program that comes with a custom wrapper shell script.
+    This shell wrapper is called "jvarkit" and is on $PATH by default. By default
+    "-Xms512m -Xmx1g" is set in the wrapper. If you want to overwrite it you can
+    specify these values directly after your binaries. If you have _JAVA_OPTIONS
+    set globally this will take precedence.
+    For example run it with "jvarkit -Xms512m -Xmx1g"
+  recipe-maintainers:
+    - DrYak
+  identifiers:
+    - biotools:jvarkit
+    - doi:10.6084/m9.figshare.1425030
diff --git a/recipes/k8/build.sh b/recipes/k8/build.sh
index 9bd4b507a0c92..3b3aeda6a195d 100644
--- a/recipes/k8/build.sh
+++ b/recipes/k8/build.sh
@@ -1,4 +1,31 @@
-#!/bin/bash
+#!/usr/bin/env bash
+
+set -x
+
+DEFAULT_LINUX_VERSION="cos7"
+NODE_VERSION="18.19.1"
+
+wget -O- https://nodejs.org/dist/v${NODE_VERSION}/node-v${NODE_VERSION}.tar.gz | tar -zxf -
+pushd node-v${NODE_VERSION}
+
+# Workaround the following error that happens only on Azure build for Linux x86_64
+# 2024-03-19T13:32:27.9240276Z 13:32:25 BIOCONDA INFO (OUT) ../src/debug_utils.cc:479:11: error: ignoring return value of 'size_t fwrite(const void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Werror=unused-result]
+# 2024-03-19T13:32:27.9240731Z 13:32:25 BIOCONDA INFO (OUT)   479 |     fwrite(str.data(), str.size(), 1, file);
+# 2024-03-19T13:32:27.9241079Z 13:32:25 BIOCONDA INFO (OUT)       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+# 2024-03-19T13:32:27.9241412Z 13:32:27 BIOCONDA INFO (OUT) cc1plus: some warnings being treated as errors
+patch -p0 < ${RECIPE_DIR}/nodejs-x86_64.patch
+
+./configure --without-node-snapshot --without-etw --without-npm --without-inspector --without-dtrace
+make -j3
+popd
+
+# make it possible to set conda build's CXXFLAGS and point to the Node sources
+sed -i.bak 's/CXXFLAGS=/CXXFLAGS?=/' Makefile
+sed -i.bak 's/NODE_SRC=/NODE_SRC?=/' Makefile
+sed -i.bak 's/LIBS=/LIBS?=/' Makefile
+
+# Then compile k8
+NODE_SRC="node-v${NODE_VERSION}" CXXFLAGS="${CXXFLAGS} -std=c++17 -g -O3 -Wall" LIBS="${LDFLAGS} -pthread" make
 
 mkdir -p $PREFIX/bin
-cp k8-$(uname -s) $PREFIX/bin/k8
+cp -f k8 $PREFIX/bin/k8
diff --git a/recipes/k8/conda_build_config.yaml b/recipes/k8/conda_build_config.yaml
new file mode 100644
index 0000000000000..7fe48bce70acc
--- /dev/null
+++ b/recipes/k8/conda_build_config.yaml
@@ -0,0 +1,3 @@
+c_stdlib_version:              # [unix]
+  - 2.17                       # [linux and x86_64]
+  - 2.17                       # [linux and not x86_64]
\ No newline at end of file
diff --git a/recipes/k8/meta.yaml b/recipes/k8/meta.yaml
index 97623689f165e..cc03193f31fce 100644
--- a/recipes/k8/meta.yaml
+++ b/recipes/k8/meta.yaml
@@ -1,28 +1,46 @@
-{% set version = "0.2.5" %}
+{% set name = "k8" %}
+{% set version = "1.2" %}
+
 package:
-  name: k8
+  name: {{ name }}
   version: {{ version }}
 
 source:
-  url: https://github.com/attractivechaos/k8/releases/download/{{ version }}/k8-{{ version }}.tar.bz2
-  sha256: a937ac44532e042cd89ac743647b592c21cfcf31679e39e5f362e81034d93d18
+  url: https://github.com/attractivechaos/k8/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 4157aa86066eb0a7874de194893c4544ac772d009cc1148377c9c346f9fc6d07
 
 build:
-  number: 4
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('k8', max_pin="x") }}
 
 requirements:
   build:
     - {{ compiler('cxx') }}
+    - make
+    - sysroot_linux-64 >=2.17  # [linux and x86_64]
   host:
+    - python ==3.8
     - zlib
+    - wget
+    - tar
+    - sed
+    - sysroot_linux-64 >=2.17  # [linux and x86_64]
   run:
-    - zlib
+    - sysroot_linux-64 >=2.17  # [linux and x86_64]
 
 test:
   commands:
-    - k8 -v | grep '^K8'
+    - k8 -v | grep '^k8'
 
 about:
-  home: https://github.com/attractivechaos/k8
+  home: "https://github.com/attractivechaos/k8"
   license: MIT
+  license_family: MIT
+  license_file: "LICENSE.txt"
   summary: "Lightweight JavaScript shell based on Google's V8 JavaScript engine"
+  dev_url: "https://github.com/attractivechaos/k8"
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/k8/nodejs-x86_64.patch b/recipes/k8/nodejs-x86_64.patch
new file mode 100644
index 0000000000000..ff5a091f47f9f
--- /dev/null
+++ b/recipes/k8/nodejs-x86_64.patch
@@ -0,0 +1,14 @@
+--- src/debug_utils.cc.orig	2024-03-19 15:40:50.492023297 +0200
++++ src/debug_utils.cc	2024-03-19 15:44:34.032276878 +0200
+@@ -476,7 +476,10 @@
+ void FWrite(FILE* file, const std::string& str) {
+   auto simple_fwrite = [&]() {
+     // The return value is ignored because there's no good way to handle it.
+-    fwrite(str.data(), str.size(), 1, file);
++    size_t ret = fwrite(str.data(), str.size(), 1, file);
++    if (ret != str.size()) {
++      fprintf(stderr, "fwrite returned error : %lu\n", ret);
++    }
+   };
+ 
+   if (file != stderr && file != stdout) {
diff --git a/recipes/kaiju/build.sh b/recipes/kaiju/build.sh
index bfea0a0feddf6..8ce3705bf9885 100755
--- a/recipes/kaiju/build.sh
+++ b/recipes/kaiju/build.sh
@@ -11,22 +11,7 @@ mkdir -p $PREFIX/bin
 
 cd $SRC_DIR/src/
 
-make CC=${CC} CXX=${CXX}
+make CC=${CC} CXX=${CXX} -j ${CPU_COUNT}
 
 cd $SRC_DIR/bin/
-cp kaiju-addTaxonNames $PREFIX/bin
-cp kaiju-convertNR $PREFIX/bin
-cp kaiju-gbk2faa.pl $PREFIX/bin
-cp kaiju $PREFIX/bin
-cp kaiju2krona $PREFIX/bin
-cp kaiju2table $PREFIX/bin
-cp kaijup $PREFIX/bin
-cp kaijux $PREFIX/bin
-cp kaiju-multi $PREFIX/bin
-cp kaiju-makedb $PREFIX/bin
-cp kaiju-mergeOutputs $PREFIX/bin
-cp kaiju-mkbwt $PREFIX/bin
-cp kaiju-mkfmi $PREFIX/bin
-cp kaiju-convertMAR.py $PREFIX/bin
-cp kaiju-taxonlistEuk.tsv $PREFIX/bin
-cp kaiju-excluded-accessions.txt $PREFIX/bin
+cp kaiju* $PREFIX/bin
diff --git a/recipes/kaiju/meta.yaml b/recipes/kaiju/meta.yaml
index e6eecd026bb1f..db305614f3c6f 100644
--- a/recipes/kaiju/meta.yaml
+++ b/recipes/kaiju/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.9.2" %}
+{% set version = "1.10.1" %}
 
 package:
   name: kaiju
@@ -6,12 +6,14 @@ package:
 
 source:
   url: https://github.com/bioinformatics-centre/kaiju/archive/v{{ version }}.tar.gz
-  sha256: 58d922358dfa4a608be888ec5c9e615b45b1e4be50615429183b0c5355e89c78
+  sha256: 3cc05533bf6007ffeff2d755c935354952b09a6b903c5e538dff14285b3c86e8
 
 build:
-  number: 3
+  number: 1
   no_link:
     - bin/kaiju-makedb.sh
+  run_exports:
+    - {{ pin_subpackage('kaiju', max_pin="x") }}
 
 requirements:
   build:
@@ -32,12 +34,16 @@ test:
     - kaiju 2>&1 | grep "Kaiju {{ version }}"
 
 about:
-  home: http://kaiju.binf.ku.dk/
-  license: GNU GPL v3
+  home: https://kaiju.binf.ku.dk/
+  license: GPL-3.0-or-later
+  license_family: GPL3
   summary: 'Fast and sensitive taxonomic classification for metagenomics'
   license_file: LICENSE
+  dev_url: https://github.com/bioinformatics-centre/kaiju
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:kaiju
     - doi:10.1038/ncomms11257
diff --git a/recipes/kalamari/build.sh b/recipes/kalamari/build.sh
new file mode 100644
index 0000000000000..4c8c7279a4d38
--- /dev/null
+++ b/recipes/kalamari/build.sh
@@ -0,0 +1,18 @@
+#!/bin/bash
+
+mkdir -pv $PREFIX/bin
+mkdir -pv $PREFIX/src
+mkdir -pv $PREFIX/share/${PKG_NAME}-${PKG_VERSION}
+
+# Add in the correct version for the build
+sed -i.bak "s/VERSION=.\+/VERSION=\"${PKG_VERSION}\"/" bin/downloadKalamari.sh
+
+for i in bin/*.pl bin/*.sh bin/*.py; do
+  chmod -v 755 $i
+  cp -vf $i $PREFIX/bin/
+done
+
+for i in src/*.tsv; do 
+  cp -vf $i $PREFIX/src/
+done
+cp -rvf src/taxonomy $PREFIX/src/
diff --git a/recipes/kalamari/meta.yaml b/recipes/kalamari/meta.yaml
new file mode 100644
index 0000000000000..3c18a8d123f89
--- /dev/null
+++ b/recipes/kalamari/meta.yaml
@@ -0,0 +1,50 @@
+{% set name = "Kalamari" %}
+{% set version = "5.6.2" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/lskatz/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: ef7592160146520ae0442966d1ac0e1f548f48cfc363a36d5b1df1c121c8c5b7
+
+build:
+  number: 0
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x") }}
+
+requirements:
+  host:
+    - perl
+    - perl-module-build
+    - entrez-direct
+  run:
+    - perl
+    - perl-module-build
+    - entrez-direct
+
+test:
+  commands:
+    - downloadKalamari.pl --help
+
+about:
+  home: "https://github.com/lskatz/kalamari"
+  summary: "A curated database of completed assemblies with taxonomy IDs"
+  description: |
+    Kalamari is a curated database of assemblies and taxonomies.
+    These assemblies are curated mainly for foodborne bacteria but have other taxa
+    such as SARS-CoV-2 and Crytposporidium.
+    Taxonomy has been modified from NCBI Taxonomy and has been minimalized to
+    just what is needed here.
+  license: "Creative Commons 4.0"
+  license_family: CC
+  license_file: "LICENSE.md"
+  doc_url: "https://github.com/lskatz/Kalamari/blob/master/README.md"
+  dev_url: "https://github.com/lskatz/Kalamari"
+
+extra:
+  recipe-maintainers:
+    - lskatz
+    - rpetit3
diff --git a/recipes/kalamari/post-link.sh b/recipes/kalamari/post-link.sh
new file mode 100644
index 0000000000000..af81165b3b0ad
--- /dev/null
+++ b/recipes/kalamari/post-link.sh
@@ -0,0 +1,23 @@
+DB_PREFIX="$PREFIX/share/${PKG_NAME}-${PKG_VERSION}"
+echo "
+===================
+Kalamari installed.
+
+To download the files, run downloadKalamari.sh
+This will load the files into:
+
+* $DB_PREFIX/kalamari - the genomic files
+
+The following databases are available:
+* buildTaxonomy.sh  - builds a modified taxonomy directory at $DB_PREFIX/taxonomy
+* filterTaxonomy.sh - filters the taxonomy directory into just taxa that are used in Kalamari into $DB_PREFIX/taxonomy/filtered (requires taxonkit)
+
+The following depend on a built taxonomy from buildTaxonomy.sh
+* buildKraken1.sh - creates a Kraken1 database at $DB_PREFIX/kraken.kalamari (requires filterTaxonomy.sh, Kraken1)
+* buildKraken2.sh - creates a Kraken2 database at $DB_PREFIX/kraken2.kalamari (requires filterTaxonomy.sh, Kraken2)
+
+For more refined options, please start with
+  downloadKalamari.pl --help
+===================
+
+" > $PREFIX/.messages.txt
diff --git a/recipes/kalign2/meta.yaml b/recipes/kalign2/meta.yaml
index 12287cdb17f9d..0c5f0efab39a6 100644
--- a/recipes/kalign2/meta.yaml
+++ b/recipes/kalign2/meta.yaml
@@ -6,8 +6,9 @@ package:
   version: {{ version }}
 
 build:
-  number: 5
-  skip: True  # [osx]
+  number: 6
+  run_exports:
+    - {{ pin_subpackage('kalign2', max_pin='x') }}
 
 source:
   url: http://msa.sbc.su.se/downloads/kalign/current.tar.gz
@@ -31,3 +32,5 @@ about:
 extra:
   identifiers:
     - doi:10.1186/1471-2105-6-298
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/kalign3/build.sh b/recipes/kalign3/build.sh
index d4d984191f5ad..dcc1809fa1c98 100644
--- a/recipes/kalign3/build.sh
+++ b/recipes/kalign3/build.sh
@@ -1,12 +1,8 @@
 #!/bin/bash
 set -eo pipefail
 
-# create configure file
-./autogen.sh
-
-# run configuration
-./configure --prefix="${PREFIX}"
-
-# compile and install
-make CFLAGS="${CFLAGS} -fcommon"
+mkdir build
+cd build
+cmake -DCMAKE_INSTALL_PREFIX=${PREFIX} .. 
+make 
 make install
diff --git a/recipes/kalign3/meta.yaml b/recipes/kalign3/meta.yaml
index b8e86ec24b29a..c9be17442a1a0 100644
--- a/recipes/kalign3/meta.yaml
+++ b/recipes/kalign3/meta.yaml
@@ -1,23 +1,25 @@
 {% set name = "kalign3" %}
-{% set version = "3.3.2" %}
+{% set version = "3.4.0" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 source:
   url: https://github.com/TimoLassmann/kalign/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: c0b357feda32e16041cf286a4e67626a52bbf78c39e2237b485d54fb38ef319a
+  sha256: 67d1a562d54b3b7622cc3164588c05b9e2bf8f1a5140bb48a4e816c61a87d4a8
 
 requirements:
   build:
   - {{ compiler('c') }}
+  - {{ compiler('cxx') }}
   - make
-  - automake
-  - autoconf
+  - cmake
 
 test:
   commands:
diff --git a/recipes/kallisto/meta.yaml b/recipes/kallisto/meta.yaml
index c312886ba195e..44bbf45c4ae97 100644
--- a/recipes/kallisto/meta.yaml
+++ b/recipes/kallisto/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.50.0" %}
+{% set version = "0.50.1" %}
 
 package:
   name: kallisto
@@ -6,10 +6,12 @@ package:
 
 source:
   url: https://github.com/pachterlab/kallisto/archive/v{{ version }}.tar.gz
-  sha256: f9cc0058d08206cb6dde4a4dcaf8a778df5a939a6e021508eea9b00b0d6d5368
+  sha256: 030752bab3b0e33cd3f23f6d8feddd74194e5513532ffbf23519e84db2a86d34
 
 build:
-  number: 0
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('kallisto', max_pin="x.x") }}
 
 requirements:
   build:
@@ -35,8 +37,11 @@ test:
 
 about:
   home: "http://pachterlab.github.io/kallisto"
-  license: BSD_2_Clause
+  license: BSD-2-Clause
+  license_family: BSD
   summary: Quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.
+  dev_url: https://github.com/pachterlab/kallisto
+  doc_url: "https://pachterlab.github.io/kallisto/manual.html"
 
 extra:
   identifiers:
@@ -46,3 +51,5 @@ extra:
     - mjsteinbaugh
   skip-lints:
     - missing_tests
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/kaptive/build.sh b/recipes/kaptive/build.sh
deleted file mode 100644
index 8792b601d75fa..0000000000000
--- a/recipes/kaptive/build.sh
+++ /dev/null
@@ -1,9 +0,0 @@
-#!/bin/bash
-mkdir -p $PREFIX/bin
-mv kaptive.py $PREFIX/bin
-chmod +x $PREFIX/bin/kaptive.py
-mkdir -p $PREFIX/opt/kaptive_reference_database
-mkdir -p $PREFIX/opt/kaptive_sample_data
-
-mv $SRC_DIR/reference_database/*.* $PREFIX/opt/kaptive_reference_database/
-mv $SRC_DIR/sample_data/*.* $PREFIX/opt/kaptive_reference_database/
diff --git a/recipes/kaptive/meta.yaml b/recipes/kaptive/meta.yaml
index 84ac9c281a046..60b9b840802d8 100644
--- a/recipes/kaptive/meta.yaml
+++ b/recipes/kaptive/meta.yaml
@@ -1,30 +1,47 @@
-{% set version = "2.0.6" %}
+{% set name = "kaptive" %}
+{% set version = "3.0.0b1" %}
 
 package:
-  name: kaptive
+  name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://github.com/katholt/Kaptive/archive/v{{ version }}.tar.gz
-  sha256: 53a90693c00a05b55e7ebb6f2eb999a89f47f6c279600ac2018f831287119019
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/kaptive-{{ version }}.tar.gz
+  sha256: ee3f4dc710b91580db84f9eb24bfc8adf6bc9d52871a018f0aabb0c4b6dd5790
 
 build:
+  entry_points:
+    - kaptive = kaptive.__main__:main
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation --no-cache-dir
   number: 0
-  noarch: generic
+  run_exports:
+    - {{ pin_subpackage('kaptive', max_pin="x") }}
 
 requirements:
+  host:
+    - python >=3.9
+    - pip
   run:
-    - python >=3
-    - biopython <1.78
-    - numpy
-    - blast >=2.3.0
+    - python >=3.9
+    - biopython
+    - dna_features_viewer
 
 test:
+  imports:
+    - kaptive
   commands:
-    - kaptive.py -h
+    - kaptive --help
 
 about:
-  home: https://github.com/katholt/Kaptive
-  license: GPL3
+  home: "https://kaptive.readthedocs.io/en/latest"
+  dev_url: "https://github.com/klebgenomics/Kaptive"
+  summary: "Reports information about surface polysaccharide loci for Klebsiella pneumoniae species complex and Acinetobacter baumannii genome assemblies."
+  license: "GPL-3.0-or-later"
+  license_family: GPL3
   license_file: LICENSE
-  summary: Reports information about surface polysaccharide loci for Klebsiella and Acinetobacter baumannii genome assemblies
+  doc_url: "https://kaptive.readthedocs.io/en/latest"
+
+extra:
+  recipe-maintainers:
+    - tomdstanton
diff --git a/recipes/kaptive/post-link.sh b/recipes/kaptive/post-link.sh
deleted file mode 100644
index 04984ece131ff..0000000000000
--- a/recipes/kaptive/post-link.sh
+++ /dev/null
@@ -1,5 +0,0 @@
-#!/bin/bash
-echo "Kaptive is installed with its database at...$PREFIX/opt/kaptive_reference_database. When you run kaptive.py, you can specify
-path to one of the databases as the following example:
-kaptive.py -fa /path/to/a/file.fasta -k $PREFIX/opt/kaptive_reference_database/Klebsiella_k_locus_primary_reference.gbk -o output
-"
diff --git a/recipes/kb-python/config.py.patch b/recipes/kb-python/config.py.patch
deleted file mode 100644
index d1bf314ad1f56..0000000000000
--- a/recipes/kb-python/config.py.patch
+++ /dev/null
@@ -1,19 +0,0 @@
---- a/kb_python/config.py
-+++ b/kb_python/config.py
-@@ -19,6 +19,7 @@ def get_provided_kallisto_path():
-     :return: path to the binary, `None` if not found
-     :rtype: str
-     """
-+    return "kallisto"
-     bin_filename = 'kallisto.exe' if PLATFORM == 'windows' else 'kallisto'
-     path = os.path.join(
-         PACKAGE_PATH, BINS_DIR, PLATFORM, 'kallisto', bin_filename
-@@ -34,6 +35,7 @@ def get_provided_bustools_path():
-     :return: path to the binary, `None` if not found
-     :rtype: str
-     """
-+    return "bustools"
-     bin_filename = 'bustools.exe' if PLATFORM == 'windows' else 'bustools'
-     path = os.path.join(
-         PACKAGE_PATH, BINS_DIR, PLATFORM, 'bustools', bin_filename
-
diff --git a/recipes/kb-python/meta.yaml b/recipes/kb-python/meta.yaml
index c89906dcedc5b..f7bd0adb17bd0 100644
--- a/recipes/kb-python/meta.yaml
+++ b/recipes/kb-python/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "kb-python" %}
-{% set version = "0.27.3" %}
+{% set version = "0.28.2" %}
 
 package:
   name: {{ name|lower }}
@@ -7,20 +7,23 @@ package:
 
 source:
   url: https://github.com/pachterlab/kb_python/archive/v{{ version }}.tar.gz
-  sha256: 87739a0cead3d762fb4fbdb9de10a5df78274f16f6b701b5479d62d169736e8f
-  patches: config.py.patch
+  sha256: e8c910865fd5196b1b3163e18a565ef96c8518b2cf34f87f288dfdc85b339078
 
 build:
-  number: 1
+  number: 2
   noarch: python
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  entry_points:
+    - kb=kb_python.main:main
+  run_exports:
+    - {{ pin_subpackage('kb-python', max_pin="x.x") }}
 
 requirements:
   host:
-    - python >=3.6
+    - python >=3.7, <3.9
     - pip
   run:
-    - python >=3.6
+    - python >=3.7, <3.9
     - anndata >=0.6.22.post1
     - h5py >=2.10.0
     - jinja2 >2.10.1
@@ -29,14 +32,13 @@ requirements:
     - nbformat >=4.4.0
     - ngs-tools >=1.5.11
     - numpy >=1.17.2
-    - pandas >=1.0.0
+    - pandas >=1.0.0, <2
     - plotly >=4.5.0
     - scanpy >=1.4.4.post1
     - scikit-learn >=0.21.3
     - tqdm >=4.39.0
-    - kallisto >=0.46.2
-    - bustools >=0.40.0
     - requests >=2.22.0
+    - typing-extensions >=3.7.4
 
 test:
   commands:
@@ -46,10 +48,10 @@ test:
 
 about:
   home: https://github.com/pachterlab/kb_python
-  license: BSD
+  license: BSD-2-Clause
   license_file: LICENSE
   license_family: BSD
-  summary: "A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing "
+  summary: "A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing"
   dev_url: https://github.com/pachterlab/kb_python
   doc_url: https://www.kallistobus.tools/
 
diff --git a/recipes/keggcharter/meta.yaml b/recipes/keggcharter/meta.yaml
index 8b1af40281292..36e89a4a7cab3 100644
--- a/recipes/keggcharter/meta.yaml
+++ b/recipes/keggcharter/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "keggcharter" %}
-{% set version = "0.6.0" %}
-{% set sha256 = "36dad8aec27fb00d8cd586391e535c04fd1b20e231b8d7a3dfe85602567dfb56" %}
+{% set version = "1.1.2" %}
+{% set sha256 = "53735598428a7a2eb75c763f2eba04efecd9c8fae3d69ea7a29747ffc60396cd" %}
 
 package:
   name: {{ name|lower }}
@@ -14,9 +14,13 @@ build:
   noarch: generic
   number: 0
   script: >
-    mkdir -p $PREFIX/bin && 
-    cp *.py KEGGCharter_prokaryotic_maps.txt $PREFIX/bin &&
-    ln -s $PREFIX/bin/keggcharter.py $PREFIX/bin/keggcharter
+    mkdir -p $PREFIX/bin &&
+    mkdir -p $PREFIX/share &&
+    cp *.py resources/*.txt resources/*.tsv $PREFIX/share &&
+    chmod +x $PREFIX/share/keggcharter.py &&
+    ln -s $PREFIX/share/keggcharter.py $PREFIX/bin/keggcharter
+  run_exports:
+    - {{ pin_subpackage("keggcharter", max_pin="x.x") }}
 
 requirements:
   run:
@@ -28,6 +32,8 @@ requirements:
     - openpyxl
     - poppler
     - mscorefonts
+    - requests
+    - lxml
 
 test:
   commands:
diff --git a/recipes/kgwasflow/meta.yaml b/recipes/kgwasflow/meta.yaml
index e5201d24c66ce..45782fe06a4af 100644
--- a/recipes/kgwasflow/meta.yaml
+++ b/recipes/kgwasflow/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "kgwasflow" %}
-{% set version = "1.2.3" %}
+{% set version = "1.3.0" %}
 
 package:
     name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://github.com/akcorut/kGWASflow/archive/refs/tags/v{{ version }}.tar.gz"
-  sha256: a1619c7834b247af778e98bca9c870ddf62a48ec3bf955b811bacf1ff884d650
+  sha256: bb8b01a3903f8c3700be328079cdfb2b12c9fdce5135866dc09005c2c5f0e495
 
 build:
   noarch: python
@@ -15,6 +15,8 @@ build:
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv"
   entry_points:
     - kgwasflow = workflow.kgwasflow:main
+  run_exports:
+    - {{ pin_subpackage('kgwasflow', max_pin="x") }}
 
 requirements:
   host:
@@ -25,7 +27,7 @@ requirements:
     - mamba
     - numpy =1.23.5
     - pandas =1.5.3
-    - snakemake =7.25.0
+    - snakemake-minimal =7.25.0
     - click
 
 test:
diff --git a/recipes/khipu-metabolomics/meta.yaml b/recipes/khipu-metabolomics/meta.yaml
new file mode 100644
index 0000000000000..49c0ce79ec582
--- /dev/null
+++ b/recipes/khipu-metabolomics/meta.yaml
@@ -0,0 +1,48 @@
+{% set name = "khipu-metabolomics" %}
+{% set version = "0.7.5" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/khipu-metabolomics-{{ version }}.tar.gz
+  sha256: 5c89c28d30fccefb1e468d8fbcb3637bd452f002438291f7eb910a762ceb99f1
+
+build:
+  entry_points:
+    - khipu=khipu.command_line:main
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('khipu-metabolomics', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.7
+    - pip
+  run:
+    - python >=3.7
+    - mass2chem
+    - treelib
+    - networkx
+    - pandas
+test:
+  imports:
+    - khipu
+  commands:
+    - pip check
+    - khipu --help
+  requires:
+    - pip
+
+about:
+  home: https://github.com/shuzhao-li/khipu
+  summary: Python library for generalized, low-level annotation of MS metabolomics
+  license: BSD-3-Clause
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - hechth
diff --git a/recipes/kinex/meta.yaml b/recipes/kinex/meta.yaml
new file mode 100644
index 0000000000000..80ebad9c3037b
--- /dev/null
+++ b/recipes/kinex/meta.yaml
@@ -0,0 +1,50 @@
+{% set name = "kinex" %}
+{% set version = "1.0.2" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://github.com/bedapub/{{ name }}/archive/v{{ version }}.tar.gz"
+  sha256: ec9809bf7f401a064824d4883ef2877d945e65b7eb1e6f10b160590b515f4553
+
+build:
+  number: 0
+  noarch: python
+  script:
+    - {{ PYTHON }} -m pip install . --no-deps -vv
+  run_exports:
+    - {{ pin_subpackage("kinex", max_pin="x") }}
+
+requirements:
+  host:
+    - pip
+    - python >=3.8,<=3.11
+  run:
+    - python >=3.8,<=3.11
+    - scipy >=1.10.0
+    - numpy >=1.19.5
+    - nbformat >=4.2.0
+    - pandas
+    - statsmodels
+    - plotly
+    - scikit-learn
+    - umap-learn
+    - importlib-resources
+
+test:
+  imports:
+    - kinex
+
+about:
+  home: "https://github.com/bedapub/kinex"
+  license: GPL-3.0-only
+  license_file: LICENSE
+  summary: "Kinex infers causal kinases from phosphoproteomics data"
+  doc_url: "https://kinex.readthedocs.io/en/latest/"
+  dev_url: "https://github.com/bedapub/kinex"
+
+extra:
+  identifiers:
+    - doi:10.1101/2023.11.23.568445
diff --git a/recipes/kingfisher/meta.yaml b/recipes/kingfisher/meta.yaml
index dab7107b96166..82a4ed31a27c7 100644
--- a/recipes/kingfisher/meta.yaml
+++ b/recipes/kingfisher/meta.yaml
@@ -1,18 +1,20 @@
 {% set name = "kingfisher" %}
-{% set version = "0.2.1" %}
+{% set version = "0.4.1" %}
 
 package:
-  name: {{ name|lower }}
+  name: {{ name }}
   version: {{ version }}
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/kingfisher-{{ version }}.tar.gz
-  sha256: b119efbda3580570486068164b59c1bad9660999d14a86fb11e72c418d6bc93b
+  sha256: b74510c997db71432b4feb03398b8432b883d873d0d05eb2f0e5a1dafbce42f6
 
 build:
   noarch: python
-  number: 1
-  script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
+  number: 0
+  script: {{ PYTHON }} -m pip install . --no-build-isolation --no-deps -vvv
+  run_exports:
+    - {{ pin_subpackage('kingfisher', max_pin="x") }}
 
 requirements:
   host:
@@ -37,15 +39,13 @@ test:
   imports:
     - kingfisher
   commands:
-    - pip check
     - kingfisher --version | grep {{ version }}
-  requires:
-    - pip
 
 about:
   home: https://github.com/wwood/kingfisher-download
   summary: Download/extract biological FASTA/Q read data and metadata
   license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENCE.txt
 
 extra:
diff --git a/recipes/kinship-read/build.sh b/recipes/kinship-read/build.sh
new file mode 100644
index 0000000000000..63e164b81fba0
--- /dev/null
+++ b/recipes/kinship-read/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+set -eu -o pipefail
+
+outdir=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
+mkdir -p $outdir
+mkdir -p $PREFIX/bin
+cp -R * $outdir/ 
+ls -l $outdir
+sed -i.bak '1 s|^.*$|#!/usr/bin/env python|g' $outdir/READ.py
+ln -s $outdir/READ.py $PREFIX/bin/kinship-read
+chmod 0755 ${PREFIX}/bin/kinship-read
\ No newline at end of file
diff --git a/recipes/kinship-read/meta.yaml b/recipes/kinship-read/meta.yaml
new file mode 100644
index 0000000000000..cf6eb33b280b4
--- /dev/null
+++ b/recipes/kinship-read/meta.yaml
@@ -0,0 +1,31 @@
+{% set version = "1.0" %}
+package:
+    name: kinship-read
+    version: {{ version }}
+
+build:
+  noarch: generic
+  number: 0
+
+source:
+    url: https://bitbucket.org/tguenther/read/get/v{{ version }}.tar.gz
+    sha256: 4c1f8033eb60a1c22bf0f520d0013a4758a2cb0f1d5245b70917d45f5a276d3b
+
+requirements:
+    run:
+        - python >=2.7,<3 
+        - r-base
+
+test:
+    commands:
+        - kinship-read -h
+
+about:
+    home: https://bitbucket.org/tguenther/read/src/master/
+    license: GPL-3.0-only
+    license_file: LICENSE
+    summary: "READ is a method to infer the degree of relationship for a pair of low-coverage individuals."
+
+extra:
+    identifiers:
+        - doi:10.1371/journal.pone.0195491
diff --git a/recipes/kissplice/build.sh b/recipes/kissplice/build.sh
index 77c03585743f9..ed2f14773dd51 100644
--- a/recipes/kissplice/build.sh
+++ b/recipes/kissplice/build.sh
@@ -1,14 +1,5 @@
 #!/bin/bash
 
-mkdir -p ${PREFIX}/bin
-
-export CXXFLAGS="$CXXFLAGS -fcommon -I$PREFIX/include"
-export CFLAGS="$CFLAGS -fcommon -I$PREFIX/include"
-
-# Unfortunately this is not written to pass on appropriate flags
-sed -i.bak "s#fopenmp#fopenmp -I$PREFIX/include#g" CMakeLists.txt
-cmake -DCMAKE_INSTALL_PREFIX=${PREFIX} -DCMAKE_LIBRARY_PATH=$PREFIX/lib $DCMAKE_INCLUDE_PATH=$PREFIX/include .
-
-# make commands
-make -j1 VERBOSE=1
-make install
+cmake -S . -B build/ -DCMAKE_INSTALL_PREFIX=${PREFIX}
+cmake --build build/
+cmake --install build/
diff --git a/recipes/kissplice/meta.yaml b/recipes/kissplice/meta.yaml
index efa85956ffe0b..68a80f573ed23 100644
--- a/recipes/kissplice/meta.yaml
+++ b/recipes/kissplice/meta.yaml
@@ -1,27 +1,32 @@
+{% set name = "kissplice" %}
+{% set version = "2.6.5" %}
+
 package:
-  name: kissplice
-  version: '2.5.5'
+  name: {{ name|lower }}
+  version: {{ version }}
 
 source:
-  url: "ftp://pbil.univ-lyon1.fr/pub/logiciel/kissplice/download/kissplice-2.5.5.tar.gz"
-  sha256: "d75d17393938d94b98811a7ef602e07d7c936d84c4ba2531bfd0830e9bf2a261"
+  url: "https://gitlab.inria.fr/erable/{{ name }}/-/archive/{{ version }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: "79fa50c8fdd83d5b1235fe5ac9293cd9aa241bb86b7badb3b524edd96b781380"
 
 build:
-  number: 2
-#  skip: True # [py2k]
+  number: 0
+  run_exports:
+  - {{ pin_subpackage(name|lower, max_pin="x") }}
 
 requirements:
   build:
-    - make
-    - {{ compiler('c') }}
     - {{ compiler('cxx') }}
-    - cmake
+    - libgomp  # [linux]
     - llvm-openmp  # [osx]
-    - libgomp      # [linux]
+    - cmake
+    - make
+    - bcalm >=2.2.3
   host:
     - zlib
   run:
-    - python >=3
+    - python >=3.8
+    - bcalm >=2.2.3
 
 test:
   commands:
@@ -31,3 +36,8 @@ about:
   home: http://kissplice.prabi.fr
   license: CeCILL license
   summary: A local transcriptome assembler for SNPs, indels and AS events
+
+extra:
+  recipe-maintainers:
+    - MONJEAUD Cyril
+    - leoisl
diff --git a/recipes/kitsune/meta.yaml b/recipes/kitsune/meta.yaml
index c663b9fdb6c2a..29d664f6f1a1d 100644
--- a/recipes/kitsune/meta.yaml
+++ b/recipes/kitsune/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "kitsune" %}
-{% set version = "1.3.3" %}
+{% set version = "1.3.5" %}
 
 package:
   name: {{ name|lower }}
@@ -7,20 +7,21 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 8acdfd3aa73e2e993f0ccd444b4a9f83dc5f1c91a46180391bbd91abd0875eb2
+  sha256: 73af096870a02dd6b3774578b4e3d6b86122e99a27877977045330f7a24d2e41
 
 build:
   number: 0
   noarch: python
   entry_points:
     - kitsune=kitsune.kitsune:main
-  script: {{ PYTHON }} -m pip install . -vv
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv
+  run_exports:
+    - {{ pin_subpackage('kitsune', max_pin="x") }}
 
 requirements:
   host:
     - python >=3.5
     - pip
-    - setuptools
   run:
     - kmer-jellyfish >=2.2
     - numpy >=1.22.3
@@ -32,19 +33,17 @@ test:
   imports:
     - kitsune
   commands:
-    - pip check
     - kitsune --version
-  requires:
-    - pip
 
 about:
   home: https://github.com/natapol/kitsune
-  license: GPL-3.0-only
-  license_family: GPL
+  license: "GPL-3.0-only"
+  license_family: GPL3
   license_file: LICENSE
   summary: kitsune
   description: |
     K-mer-length Iterative Selection for UNbiased Ecophylogenomics
+  dev_url: https://github.com/natapol/kitsune
 
 extra:
   recipe-maintainers:
diff --git a/recipes/kma/build.sh b/recipes/kma/build.sh
index 202febb333a5e..20626f6691fb4 100755
--- a/recipes/kma/build.sh
+++ b/recipes/kma/build.sh
@@ -1,5 +1,7 @@
+#!/bin/bash
+
 BINARIES="kma kma_index kma_shm kma_update"
-make CFLAGS="-w -O3 -I$PREFIX/include -L$PREFIX/lib"
+make CFLAGS="${CFLAGS} -w -O3 -I${PREFIX}/include -L${PREFIX}/lib"
 
 mkdir -p ${PREFIX}/bin
 cp $BINARIES $PREFIX/bin
diff --git a/recipes/kma/meta.yaml b/recipes/kma/meta.yaml
index 8cfa498075d15..0ba3d848b9a81 100644
--- a/recipes/kma/meta.yaml
+++ b/recipes/kma/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "kma" %}
-{% set version = "1.4.9" %}
-{% set sha256 = "6434e6fcc23420edc29922baf289e4a6d923f31949c34d8efd2331f3bb5e8e8b" %}
+{% set version = "1.4.14" %}
+{% set sha256 = "85971fcb2e806d2ee95d3499cd9b358f313b1635d5d71cb189eabc503be4b10f" %}
 
 package:
   name: {{ name|lower }}
@@ -11,7 +11,9 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 2
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('kma', max_pin="x") }}
 
 requirements:
   build:
@@ -21,7 +23,7 @@ requirements:
     - zlib
   run:
     - zlib
-  
+
 test:
   commands:
    - kma -h | grep KMA >/dev/null
@@ -33,6 +35,10 @@ about:
   home: https://bitbucket.org/genomicepidemiology/kma
   summary: 'KMA is mapping a method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend.'
   license: Apache-2.0
+  license_family: APACHE
+
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - doi:10.1186/s12859-018-2336-6
diff --git a/recipes/kmc/Makefile.patch b/recipes/kmc/Makefile.patch
deleted file mode 100644
index fb9711ad7ff95..0000000000000
--- a/recipes/kmc/Makefile.patch
+++ /dev/null
@@ -1,71 +0,0 @@
-From 4a29584d69d40a41d2569899b03a5660af85f97c Mon Sep 17 00:00:00 2001
-From: marekkokot <marek.koki@gmail.com>
-Date: Thu, 20 Jan 2022 19:51:36 +0100
-Subject: [PATCH] makefile for bioconda
-
----
- Makefile | 27 ++++++++++++++++++---------
- 1 file changed, 18 insertions(+), 9 deletions(-)
-
-diff --git a/Makefile b/Makefile
-index bc07d35..d2784a7 100644
---- a/Makefile
-+++ b/Makefile
-@@ -22,8 +22,8 @@ ifeq ($(UNAME_S),Darwin)
- else
- 	CC 	= g++
- 
--	CFLAGS	= -Wall -O3 -m64 -static -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++14
--	CLINK	= -lm -static -O3 -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -std=c++14
-+	CFLAGS	= -Wall -O3 -m64 -pthread -std=c++14
-+	CLINK	= -lm -O3 -std=c++14
- 
- 	PY_KMC_API_CFLAGS = -fPIC -Wall -shared -std=c++14 -O3
- endif
-@@ -69,13 +69,9 @@ else
- 	$(KMC_MAIN_DIR)/raduls_avx2.o \
- 	$(KMC_MAIN_DIR)/raduls_avx.o
- 
--	KMC_LIBS = \
--	$(KMC_MAIN_DIR)/libs/libz.a \
--	$(KMC_MAIN_DIR)/libs/libbz2.a
--
--	KMC_TOOLS_LIBS = \
--	$(KMC_TOOLS_DIR)/libs/libz.a \
--	$(KMC_TOOLS_DIR)/libs/libbz2.a
-+	KMC_LIBS = -lz -lbz2 -lpthread 
-+	
-+	KMC_TOOLS_LIBS = -lz -lbz2 -lpthread 
- 
- 	LIB_KMC_CORE = $(OUT_BIN_DIR)/libkmc_core.a
- endif
-@@ -90,6 +86,12 @@ $(KMC_API_DIR)/mmer.o \
- $(KMC_API_DIR)/kmc_file.o \
- $(KMC_API_DIR)/kmer_api.o
- 
-+KMC_API_PICO = \
-+$(KMC_API_DIR)/mmer.pico \
-+$(KMC_API_DIR)/kmc_file.pico \
-+$(KMC_API_DIR)/kmer_api.pico
-+
-+
- KMC_API_SRC_FILES = $(wildcard $(KMC_API_DIR)/*.cpp)
- PY_KMC_API_OBJS = $(patsubst $(KMC_API_DIR)/%.cpp,$(PY_KMC_API_DIR)/%.o,$(KMC_API_SRC_FILES))
- 
-@@ -110,6 +112,13 @@ $(KMC_TOOLS_DIR)/kff_info_reader.o
- $(KMC_CLI_OBJS) $(KMC_CORE_OBJS) $(KMC_DUMP_OBJS) $(KMC_API_OBJS) $(KFF_OBJS) $(KMC_TOOLS_OBJS): %.o: %.cpp
- 	$(CC) $(CFLAGS) -c $< -o $@
- 
-+$(KMC_API_PICO): %.pico: %.cpp
-+	$(CC) $(CFLAGS) -fpic -c -o $@ $<
-+
-+$(OUT_BIN_DIR)/libkmc_api.so: $(KMC_API_PICO)
-+	-mkdir -p $(OUT_BIN_DIR)
-+	$(CC) -shared $(LDFLAGS) -o $@ $^
-+
- $(KMC_MAIN_DIR)/raduls_sse2.o: $(KMC_MAIN_DIR)/raduls_sse2.cpp
- 	$(CC) $(CFLAGS) -msse2 -c $< -o $@
- $(KMC_MAIN_DIR)/raduls_sse41.o: $(KMC_MAIN_DIR)/raduls_sse41.cpp
--- 
-2.34.1
-
diff --git a/recipes/kmc/build.sh b/recipes/kmc/build.sh
index 7cb93486302dd..2b3e4f0ef50b6 100644
--- a/recipes/kmc/build.sh
+++ b/recipes/kmc/build.sh
@@ -1,23 +1,17 @@
 #!/bin/bash
 
-mkdir -p $PREFIX/bin
-mkdir -p $PREFIX/lib
-mkdir -p $PREFIX/include
+mkdir -p ${PREFIX}/bin
+mkdir -p ${PREFIX}/lib
+mkdir -p ${PREFIX}/include
 
-if [ "$(uname)" == "Darwin" ]; then    
+if [ "$(uname)" == "Darwin" ]; then
     mv bin/kmc ${PREFIX}/bin
     mv bin/kmc_tools ${PREFIX}/bin
     mv bin/kmc_dump ${PREFIX}/bin
 else
-    make CC=${CXX} -j32 all bin/libkmc_api.so
-    mv bin/kmc $PREFIX/bin
-    mv bin/kmc_tools $PREFIX/bin
-    mv bin/kmc_dump $PREFIX/bin
-    mv bin/libkmc_core.a $PREFIX/lib
-    mv bin/libkmc_api.so $PREFIX/lib/libkmc.so
-    mv kmc_api/*.h $PREFIX/include
-    mv include/kmc_runner.h $PREFIX/include
+    mv bin/kmc ${PREFIX}/bin
+    mv bin/kmc_tools ${PREFIX}/bin
+    mv bin/kmc_dump ${PREFIX}/bin
+    mv bin/libkmc_core.a ${PREFIX}/lib
+    mv include/kmc_runner.h ${PREFIX}/include
 fi
-
-
-
diff --git a/recipes/kmc/build_failure.linux-64.yaml b/recipes/kmc/build_failure.linux-64.yaml
deleted file mode 100644
index fc88366e0a16b..0000000000000
--- a/recipes/kmc/build_failure.linux-64.yaml
+++ /dev/null
@@ -1,2 +0,0 @@
-recipe_sha: abc0774a2c2552b5cc367cf53ea0fd7ea3f67f838a2b3ad526a5a43886553235  # The commit at which this recipe failed to build.
-skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
diff --git a/recipes/kmc/meta.yaml b/recipes/kmc/meta.yaml
index b58633c5e5856..bde88e12d619b 100644
--- a/recipes/kmc/meta.yaml
+++ b/recipes/kmc/meta.yaml
@@ -1,29 +1,28 @@
-{% set version = "3.2.1" %}
-{% set url = "https://github.com/refresh-bio/KMC/archive/v3.2.1.tar.gz" %}  # [linux]
-{% set sha256 = "7db333091a754508163a097c41720cf32a80abe160bef60f3fc82c8da1d67896" %}  # [linux]
-{% set url = "https://github.com/refresh-bio/kmc/releases/download/v3.2.1/kmc3.2.1.mac.tar.gz" %}  # [osx]
-{% set sha256 = "d4bd30d5e16bcbaac7f979f18e49e7447b0148709fb26f754490be9e3e766e73" %}  # [osx]
-
+{% set name = "kmc" %}
+{% set version = "3.2.4" %}
+{% set url = "https://github.com/refresh-bio/KMC/releases/download/v3.2.4/KMC3.2.4.linux.x64.tar.gz" %}  # [linux and x86_64]
+{% set sha256 = "158f2084f8d928b3f33b8aaf7d1220fee4183bf46837787e5e6b16bbdf54d31d" %}  # [linux and x86_64]
+{% set url = "https://github.com/refresh-bio/KMC/releases/download/v3.2.4/KMC3.2.4.linux.arm64.tar.gz" %}  # [linux and aarch64]
+{% set sha256 = "3049745a71c4219fb05cf003a53b03a9f434e8afacb79c710488f1aefae0a9c8" %}  # [linux and aarch64]
+{% set url = "https://github.com/refresh-bio/KMC/releases/download/v3.2.4/KMC3.2.4.mac.x64.tar.gz" %}  # [osx]
+{% set sha256 = "70d66545d5802cf116469e41acb2a04631271feac81ff5c4d1c299e9407ca326" %}  # [osx]
 
 package:
-  name: kmc
+  name: {{ name }}
   version: {{ version }}
 
 source:
   url: {{ url }}
   sha256:  {{ sha256 }}
-  patches:
-    - Makefile.patch  # [linux]
 
 build:
-  number: 3
+  number: 1
+  run_exports:
+    - {{ pin_subpackage("kmc", max_pin="x") }}
 
 requirements:
   build:
     - make
-    - bzip2
-    - zlib
-    - {{ compiler('c') }}
     - {{ compiler('cxx') }}
   host:
     - zlib
@@ -32,6 +31,10 @@ requirements:
     - zlib
     - bzip2
 
+test:
+  commands:
+    - kmc --help # [not aarch64]
+
 about:
   home: https://github.com/refresh-bio/kmc
   summary: "Tools for efficient k-mer counting and filtering of reads based on k-mer content."
@@ -39,8 +42,13 @@ about:
     KMC is a utility designed for counting k-mers (sequences
     of consecutive k symbols) in a set of DNA sequences. KMC tools allow performing various operations on k-mers sets.
   license: GPL-3
-  license_family: GPL
+  license_family: GPL3
   license_file: gpl-3.0.txt
-test:
-  commands:
-    - kmc --help
+  dev_url: https://github.com/refresh-bio/kmc
+
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:kmc
+    - doi:10.1093/bioinformatics/btx304
diff --git a/recipes/kmcp/meta.yaml b/recipes/kmcp/meta.yaml
index 9f00f91285a47..f7bba027cc540 100644
--- a/recipes/kmcp/meta.yaml
+++ b/recipes/kmcp/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.9.3" %}
+{% set version = "0.9.4" %}
 
 package:
   name: kmcp
@@ -6,13 +6,15 @@ package:
 
 source:
   url: https://github.com/shenwei356/kmcp/releases/download/v{{ version }}/kmcp_darwin_amd64.tar.gz # [osx]
-  md5: 1b6d9a8d788ab4adde632f0828034f93 # [osx]
+  md5: 744d24450760913571b89d9188bd52b0 # [osx]
 
   url: https://github.com/shenwei356/kmcp/releases/download/v{{ version }}/kmcp_linux_amd64.tar.gz # [linux]
-  md5: 967bde445c573510412aaf88eae025e8 # [linux]
+  md5: f2161625f31d2b553c055832ea560c07 # [linux]
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage('kmcp', max_pin='x') }}
 
 test:
   commands:
diff --git a/recipes/kmd_hmdb_api_client/LICENSE.md b/recipes/kmd_hmdb_api_client/LICENSE.md
new file mode 100644
index 0000000000000..fab6548ec0385
--- /dev/null
+++ b/recipes/kmd_hmdb_api_client/LICENSE.md
@@ -0,0 +1,659 @@
+GNU Affero General Public License
+=================================
+
+_Version 3, 19 November 2007_
+_Copyright (C) 2007 Free Software Foundation, Inc. &lt;<https://fsf.org/>&gt;_
+
+Everyone is permitted to copy and distribute verbatim copies of this
+license document, but changing it is not allowed.
+
+## Preamble
+
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+The licenses for most software and other practical works are designed
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+share and change all versions of a program--to make sure it remains
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+license (a) in connection with copies of the covered work conveyed by
+you (or copies made from those copies), or (b) primarily for and in
+connection with specific products or compilations that contain the
+covered work, unless you entered into that arrangement, or that patent
+license was granted, prior to 28 March 2007.
+
+Nothing in this License shall be construed as excluding or limiting
+any implied license or other defenses to infringement that may
+otherwise be available to you under applicable patent law.
+
+### 12. No Surrender of Others' Freedom.
+
+If conditions are imposed on you (whether by court order, agreement or
+otherwise) that contradict the conditions of this License, they do not
+excuse you from the conditions of this License. If you cannot convey a
+covered work so as to satisfy simultaneously your obligations under
+this License and any other pertinent obligations, then as a
+consequence you may not convey it at all. For example, if you agree to
+terms that obligate you to collect a royalty for further conveying
+from those to whom you convey the Program, the only way you could
+satisfy both those terms and this License would be to refrain entirely
+from conveying the Program.
+
+### 13. Remote Network Interaction; Use with the GNU General Public License.
+
+Notwithstanding any other provision of this License, if you modify the
+Program, your modified version must prominently offer all users
+interacting with it remotely through a computer network (if your
+version supports such interaction) an opportunity to receive the
+Corresponding Source of your version by providing access to the
+Corresponding Source from a network server at no charge, through some
+standard or customary means of facilitating copying of software. This
+Corresponding Source shall include the Corresponding Source for any
+work covered by version 3 of the GNU General Public License that is
+incorporated pursuant to the following paragraph.
+
+Notwithstanding any other provision of this License, you have
+permission to link or combine any covered work with a work licensed
+under version 3 of the GNU General Public License into a single
+combined work, and to convey the resulting work. The terms of this
+License will continue to apply to the part which is the covered work,
+but the work with which it is combined will remain governed by version
+3 of the GNU General Public License.
+
+### 14. Revised Versions of this License.
+
+The Free Software Foundation may publish revised and/or new versions
+of the GNU Affero General Public License from time to time. Such new
+versions will be similar in spirit to the present version, but may
+differ in detail to address new problems or concerns.
+
+Each version is given a distinguishing version number. If the Program
+specifies that a certain numbered version of the GNU Affero General
+Public License "or any later version" applies to it, you have the
+option of following the terms and conditions either of that numbered
+version or of any later version published by the Free Software
+Foundation. If the Program does not specify a version number of the
+GNU Affero General Public License, you may choose any version ever
+published by the Free Software Foundation.
+
+If the Program specifies that a proxy can decide which future versions
+of the GNU Affero General Public License can be used, that proxy's
+public statement of acceptance of a version permanently authorizes you
+to choose that version for the Program.
+
+Later license versions may give you additional or different
+permissions. However, no additional obligations are imposed on any
+author or copyright holder as a result of your choosing to follow a
+later version.
+
+### 15. Disclaimer of Warranty.
+
+THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
+APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
+HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT
+WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT
+LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
+A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND
+PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE
+DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR
+CORRECTION.
+
+### 16. Limitation of Liability.
+
+IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
+WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR
+CONVEYS THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,
+INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES
+ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT
+NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR
+LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM
+TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER
+PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES.
+
+### 17. Interpretation of Sections 15 and 16.
+
+If the disclaimer of warranty and limitation of liability provided
+above cannot be given local legal effect according to their terms,
+reviewing courts shall apply local law that most closely approximates
+an absolute waiver of all civil liability in connection with the
+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
+END OF TERMS AND CONDITIONS
+
+## How to Apply These Terms to Your New Programs
+
+If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these
+terms.
+
+To do so, attach the following notices to the program. It is safest to
+attach them to the start of each source file to most effectively state
+the exclusion of warranty; and each file should have at least the
+"copyright" line and a pointer to where the full notice is found.
+
+        <one line to give the program's name and a brief idea of what it does.>
+        Copyright (C) <year>  <name of author>
+
+        This program is free software: you can redistribute it and/or modify
+        it under the terms of the GNU Affero General Public License as
+        published by the Free Software Foundation, either version 3 of the
+        License, or (at your option) any later version.
+
+        This program is distributed in the hope that it will be useful,
+        but WITHOUT ANY WARRANTY; without even the implied warranty of
+        MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+        GNU Affero General Public License for more details.
+
+        You should have received a copy of the GNU Affero General Public License
+        along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+Also add information on how to contact you by electronic and paper
+mail.
+
+If your software can interact with users remotely through a computer
+network, you should also make sure that it provides a way for users to
+get its source. For example, if your program is a web application, its
+interface could display a "Source" link that leads users to an archive
+of the code. There are many ways you could offer source, and different
+solutions will be better for different programs; see section 13 for
+the specific requirements.
+
+You should also get your employer (if you work as a programmer) or
+school, if any, to sign a "copyright disclaimer" for the program, if
+necessary. For more information on this, and how to apply and follow
+the GNU AGPL, see <https://www.gnu.org/licenses/>.
diff --git a/recipes/kmd_hmdb_api_client/meta.yaml b/recipes/kmd_hmdb_api_client/meta.yaml
new file mode 100644
index 0000000000000..93847f8d9b6a0
--- /dev/null
+++ b/recipes/kmd_hmdb_api_client/meta.yaml
@@ -0,0 +1,39 @@
+{% set name = "kmd_hmdb_api_client" %}
+{% set version = "1.0.1" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: "5a432e6dfb420e05f8bafad589535a0e7c274cca3e46628e0becd3d149d4c9f6"
+
+build:
+  number: 0
+  noarch: python
+  script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
+
+requirements:
+  host:
+    - pip
+    - python >=3.9
+  run:
+    - attrs >=23.1.0
+    - click >=8.1.3
+    - httpx >=0.24.1
+    - python >=3.9
+
+test:
+  imports:
+    - "{{ name }}"
+
+about:
+  home: "https://pypi.org/project/kmd-hmdb-api-client/"
+  license: AGPL-3.0-or-later
+  license_file: LICENSE.md
+  summary: "The KMD HMDB project API Client"
+
+extra:
+  recipe-maintainers:
+    - lain-inrae
diff --git a/recipes/kmer-jellyfish/build.sh b/recipes/kmer-jellyfish/build.sh
index c10cb1869a9c5..423caa66311f4 100644
--- a/recipes/kmer-jellyfish/build.sh
+++ b/recipes/kmer-jellyfish/build.sh
@@ -1,6 +1,16 @@
-#!/bin/bash
+#!/bin/bash -euo
 
-autoreconf -fi
-./configure --prefix=$PREFIX
-make
+if [[ "$OSTYPE" == "darwin"* ]]; then
+    # Python bindings do no work on OSX
+    ./configure --prefix=${PREFIX} --with-sse CXX="${CXX}" \
+	CXXFLAGS="${CXXFLAGS} -O3" CPPFLAGS="${CPPFLAGS} -I${PREFIX}/include" \
+	LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
+else
+    ./configure --prefix=${PREFIX} --enable-python-binding --with-sse CXX="${CXX}" \
+	CXXFLAGS="${CXXFLAGS} -O3" CPPFLAGS="${CPPFLAGS} -I${PREFIX}/include" \
+	LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
+fi
+
+make -j ${CPU_COUNT}
+make check -j ${CPU_COUNT}
 make install
diff --git a/recipes/kmer-jellyfish/meta.yaml b/recipes/kmer-jellyfish/meta.yaml
index 14cf2981e3866..3abc6d73d93e4 100644
--- a/recipes/kmer-jellyfish/meta.yaml
+++ b/recipes/kmer-jellyfish/meta.yaml
@@ -1,39 +1,38 @@
-{% set version = "2.3.0" %}
+{% set name = "kmer-jellyfish" %}
+{% set version = "2.3.1" %}
 
 package:
-  name: kmer-jellyfish
+  name: {{ name }}
   version: {{ version }}
 
-build:
-  number: 4
-
 source:
   url: https://github.com/gmarcais/Jellyfish/releases/download/v{{ version }}/jellyfish-{{ version }}.tar.gz
-  sha256: e195b7cf7ba42a90e5e112c0ed27894cd7ac864476dc5fb45ab169f5b930ea5a
+  sha256: ee032b57257948ca0f0610883099267572c91a635eecbd88ae5d8974c2430fcd
+
+build:
+  number: 1
+  run_exports:
+    - {{ pin_subpackage("kmer-jellyfish", max_pin="x") }}
 
 requirements:
   build:
-    - make
     - {{ compiler('cxx') }}
-    - autoconf <2.7  # configure script has a problem with later autoconf
-    - automake
-    - gettext
-    - libtool
-    - pkg-config
-    - yaggo >=1.5.8
+    - make
 
 test:
   commands:
     - jellyfish --version 2>&1 > /dev/null
 
 about:
-  home: http://www.genome.umd.edu/jellyfish.html
-  license: GPL-3.0
-  license_family: GPL
-  summary: Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence
-  dev_url: https://github.com/gmarcais/Jellyfish
+  home: "https://genome.umd.edu/jellyfish.html"
+  license: "GPL-3.0-or-later"
+  license_family: GPL3
+  summary: "Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence."
+  dev_url: "https://github.com/gmarcais/Jellyfish"
+  doc_url: "https://genome.umd.edu/docs/JellyfishUserGuide.pdf"
 
 extra:
   identifiers:
     - biotools:jellyfish
     - doi:10.1093/bioinformatics/btr011
+    - usegalaxy-eu:jellyfish
diff --git a/recipes/knock-knock/meta.yaml b/recipes/knock-knock/meta.yaml
index 074c03b9ef2da..dcdc88a74d912 100644
--- a/recipes/knock-knock/meta.yaml
+++ b/recipes/knock-knock/meta.yaml
@@ -1,43 +1,46 @@
 {% set name = "knock-knock" %}
-{% set version = "0.2.1" %}
+{% set version = "0.4.2" %}
 
 package:
   name: "{{ name|lower }}"
   version: "{{ version }}"
 
 source:
-  url: "https://files.pythonhosted.org/packages/1e/77/86a1a3047b15380ed26ae0754cf7870a572e4893d7e359e5bf4c4b9a932f/knock_knock-0.2.1.tar.gz"
-  sha256: "466250fe26904c347a64a8a2707eb8cb8c1f2184e7364ff028f4700341525f61"
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/knock_knock-{{ version }}.tar.gz"
+  sha256: "69128026055c1b8aa7e7b6e2947f108b21795a406687199e1689bd9815197d5f"
 
 build:
   noarch: python
   number: 0
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('knock-knock', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - python >=3.6
+    - python >=3.7
   run:
-    - biopython >=1.70
-    - blast ==2.7.1
-    - bokeh >=0.12.14
-    - hits >=0.1
+    - python >=3.7
+    - bokeh >=2.4.2
+    - biopython >=1.80
+    - h5py >=3.1.0
     - ipywidgets >=7.1.2
-    - matplotlib >=2.1.2
-    - minimap2 ==2.16
-    - nbconvert >=5.3.1
+    - matplotlib-base >=2.1.2
+    - nbconvert >=6.0.7
     - nbformat >=4.4.0
     - numpy >=1.14.2
     - pandas >=0.22.0
-    - parallel >=20190522
     - pillow >=5.0.0
     - pysam >=0.14
-    - python >=3.6
     - pyyaml >=3.12
+    - hits >=0.4.0
+    - tqdm >=4.31.1
+    - blast >=2.7.1
+    - minimap2 ==2.16
     - samtools >=1.9
     - star >=2.7.1
-    - tqdm >=4.31.1
+    - parallel >=20190522
 
 test:
   imports:
@@ -49,10 +52,11 @@ test:
     - samtools --version
     - STAR --version
 
-
 about:
   home: "https://github.com/jeffhussmann/knock-knock"
-  license: "GPL-3"
+  license: "GPL-3.0-or-later"
+  license_family: GPL3
+  license_file: LICENSE
   summary: "toolkit for analyzing CRISPR knock-in experiments"
 
 extra:
diff --git a/recipes/kosudoku/LICENSE.md b/recipes/kosudoku/LICENSE.md
new file mode 100644
index 0000000000000..8ec1e88695ebf
--- /dev/null
+++ b/recipes/kosudoku/LICENSE.md
@@ -0,0 +1,15 @@
+Princeton University Copyright Notice and Limited License
+
+Copyright 2016, Trustees of Princeton University (“Princeton”), Princeton, NJ. 
+
+All Rights Reserved.
+
+Permission to use, copy, modify, and distribute this software and its documentation for any purpose in the following limited field of use: research, education and non-commercial purposes is hereby granted without fee, provided that (1) this copyright notice and limited license appear in all copies and in supporting documentation and (2) the name of Princeton University shall not be used in advertising or publicity pertaining to the use or distribution of the software without specific, written prior permission.  
+
+THIS SOFTWARE IS PROVIDED “AS IS.” PRINCETON UNIVERSITY DISCLAIMS ALL WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED 
+WARRANTIES OF MERCHANTABILITY AND FITNESS FOR ANY PARTICULAR PURPOSE. IN NO EVENT SHALL PRINCETON UNIVERSITY BE LIABLE FOR ANY SPECIAL, 
+INDIRECT OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT,
+NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE.
+
+Please be aware that Princeton has filed for one or more U.S. patents for related technology.  No license is implied or granted with 
+respect to these patents. 
diff --git a/recipes/kosudoku/build.sh b/recipes/kosudoku/build.sh
new file mode 100644
index 0000000000000..3283ef246f2df
--- /dev/null
+++ b/recipes/kosudoku/build.sh
@@ -0,0 +1,10 @@
+#!/bin/bash -e
+
+# Copy python scripts into somewhere in the env
+mkdir -p "${PREFIX}/share/kosudoku"
+cp -r ./programs/* "${PREFIX}/share/kosudoku/"
+
+# Copy bash wrappers to somewhere in the path
+cp ./bash_wrappers/kosudoku-* "${PREFIX}/bin/"
+chmod +x ${PREFIX}/bin/kosudoku*
+
diff --git a/recipes/kosudoku/meta.yaml b/recipes/kosudoku/meta.yaml
new file mode 100644
index 0000000000000..416a75f601aa3
--- /dev/null
+++ b/recipes/kosudoku/meta.yaml
@@ -0,0 +1,45 @@
+{% set name = "kosudoku" %}
+{% set version = "1.0" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version | replace('-', '_') }}"
+
+source:
+  url: https://github.com/tuncK/kosudoku/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 01819d12a9e9da6fa9cb01ac817cb03a1f918ab2b6c8f83d265e931e2627c570
+
+build:
+  number: 0
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage('kosudoku', max_pin="x") }}
+
+requirements:
+  host:
+    - python
+  run:
+    - biopython
+    - bowtie2
+    - matplotlib-base
+    - numpy <1.24
+    - python >=3.5
+    - scipy
+
+test:
+  commands:
+   - kosudoku-poolanalyze --help > /dev/null
+   - kosudoku-poolfit --help > /dev/null
+   - kosudoku-poolsolve --help > /dev/null
+   - kosudoku-seqanalyze --help > /dev/null
+   - kosudoku-verify --help > /dev/null
+
+about:
+  home: https://github.com/tuncK/kosudoku
+  license: Princeton University Copyright Notice and Limited License
+  license_file: LICENSE.md
+  summary: "kosudoku: a suite to rapidly create whole genome knockout collections for microorganisms"
+
+extras:
+  identifiers:
+    - doi:10.1038/nprot.2017.073
diff --git a/recipes/koverage/meta.yaml b/recipes/koverage/meta.yaml
new file mode 100644
index 0000000000000..fb97ab5265ccd
--- /dev/null
+++ b/recipes/koverage/meta.yaml
@@ -0,0 +1,48 @@
+{% set name = "koverage" %}
+{% set version = "0.1.11" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: 24d785d654524a59c109f6fb3b3f6fc211b5f7177d643597f144fc6954a74d57
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
+  number: 0
+
+requirements:
+  host:
+    - python >=3.10
+    - pip
+  run:
+    - python >=3.10
+    - snaketool-utils >=0.0.4
+    - metasnek >=0.0.8
+    - snakemake >=7.14.0,<8
+    - pulp <2.8
+    - pyyaml >=6.0
+    - Click >=8.1.3
+    - zstandard >=0.21.0
+    - numpy >=1.24.3
+    - datapane >=0.16.7
+    - plotly >=5.15.0
+
+test:
+  commands:
+    - koverage --help
+
+about:
+  home: https://github.com/beardymcjohnface/Koverage
+  summary: Read-coverage statistics pipelines for multiple samples
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - beardymcjohnface
diff --git a/recipes/kpop/build.sh b/recipes/kpop/build.sh
new file mode 100644
index 0000000000000..5a56f71b06c0b
--- /dev/null
+++ b/recipes/kpop/build.sh
@@ -0,0 +1,7 @@
+#!/bin/bash
+
+mkdir -p $PREFIX/bin
+cp $SRC_DIR/KPop* $PREFIX/bin
+
+chmod +x $PREFIX/bin
+chmod +x $PREFIX/bin/KPop*  
diff --git a/recipes/kpop/meta.yaml b/recipes/kpop/meta.yaml
new file mode 100644
index 0000000000000..2c715ea857c7e
--- /dev/null
+++ b/recipes/kpop/meta.yaml
@@ -0,0 +1,51 @@
+{% set name = "kpop" %}
+{% set version = "1.1.1" %}
+{% set sha_linux = "915eb6d4e0b41b4f6409b5fd97188193106b3300734c92131ab8ad0618051e4a" %}
+{% set sha_macos = "06c15129e9ecea58092f5e4d5df136a0c227815f011f80f63ad9093d70cc46d3" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  - url: https://github.com/PaoloRibeca/KPop/releases/download/v{{ version }}/KPop-{{ version }}-Linux_x86-64.tar.xz  # [linux]
+    sha256: {{ sha_linux }}  # [linux]
+  - url: https://github.com/PaoloRibeca/KPop/releases/download/v{{ version }}/KPop-{{ version }}-MacOS_x86-64.tar.xz  # [osx]
+    sha256: {{ sha_macos }}  # [osx]
+
+build:
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+  number: 1
+
+requirements:
+  run:
+    - bash >=4.4.20
+    - r-data.table
+    - r-ca
+
+test:
+  commands:
+    - KPopCount -V
+    - KPopCountDB -V
+    - KPopTwist_ -V
+    - KPopTwistDB -V
+
+about:
+  home: https://github.com/PaoloRibeca/KPop
+  license: GPL-3.0-only
+  license_file: LICENSE
+  summary: 'An assembly-free and scalable method for the comparative analysis of microbial genomes, based on full k-mer spectra and dataset-specific transformations.'
+  description:
+    KPop is an assembly-free and scalable method for the comparative analysis of microbial genomes, 
+    based on full k-mer spectra and dataset-specific transformations. It is built using OCaml <https://ocaml.org> and R <https://www.r-project.org/>.
+  dev_url: https://github.com/PaoloRibeca/KPop
+
+extra:
+  skip-lints:
+    - should_be_noarch_generic
+  identifiers:
+    - doi:10.1101/2022.06.22.497172
+  recipe-maintainers:
+    - PaoloRibeca
+    - ryanmorrison22
diff --git a/recipes/krakenuniq/meta.yaml b/recipes/krakenuniq/meta.yaml
index 4b08d4525ee50..579f9c222be81 100644
--- a/recipes/krakenuniq/meta.yaml
+++ b/recipes/krakenuniq/meta.yaml
@@ -14,7 +14,9 @@ source:
 
 build:
   skip: true  # [osx]
-  number: 1
+  number: 2
+  run_exports:
+    - {{ pin_subpackage('krakenuniq', max_pin="x.x") }}
 
 requirements:
   build:
@@ -35,6 +37,7 @@ requirements:
     - perl-libwww-perl
     - perl-lwp-protocol-https
     - curl
+    - bc
 
 test:
   commands:
diff --git a/recipes/kseqpp/meta.yaml b/recipes/kseqpp/meta.yaml
index 97cc6aefc36aa..595e642475766 100644
--- a/recipes/kseqpp/meta.yaml
+++ b/recipes/kseqpp/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "kseqpp" %}
-{% set version = "1.1.1" %}
+{% set version = "1.1.2" %}
 
 package:
   name: {{ name|lower }}
@@ -7,10 +7,12 @@ package:
 
 source:
   url: https://github.com/cartoonist/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 7bad18d7b00b74f15503f1961c71455d5dcf751e539287aa8fc74c31a63a513f
+  sha256: 80d5da09f725517fe27c13bbc3efea55735ef426ffe086fd0544e18e670190be
 
 build:
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/ksnp/build.sh b/recipes/ksnp/build.sh
new file mode 100644
index 0000000000000..7f5201bfd81b5
--- /dev/null
+++ b/recipes/ksnp/build.sh
@@ -0,0 +1,7 @@
+#!/bin/bash
+set -euo pipefail
+
+mkdir build; cd build; cmake ..; make; cd ..
+
+mkdir -p ${PREFIX}/bin
+cp build/ksnp ${PREFIX}/bin
diff --git a/recipes/ksnp/meta.yaml b/recipes/ksnp/meta.yaml
new file mode 100644
index 0000000000000..9ac3a668035c3
--- /dev/null
+++ b/recipes/ksnp/meta.yaml
@@ -0,0 +1,37 @@
+{% set name = "KSNP" %}
+{% set version = "1.0.3" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  - url: https://github.com/zhouqiansolab/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+    sha256: 78975c007919b12af7a61a27d66347228a43ea223d59e37aad5ce7ae691a0569
+
+build:
+  number: 0
+  python: 3.7
+  run_exports:
+    - {{ pin_subpackage("ksnp", max_pin="x") }}
+
+requirements:
+  build:
+    - make
+    - cmake >=3.10.0
+    - {{ compiler('cxx') }}
+    - python >=3.7
+  host:
+    - zlib
+    - htslib 
+
+test:
+  commands:
+    - "ksnp 2>&1 | grep ksnp"
+
+
+about:
+  summary: k-mer based haplotype assembly
+  home: https://github.com/zhouqiansolab/KSNP
+  license: GPL3
+  license_file: COPYING
diff --git a/recipes/ksw/meta.yaml b/recipes/ksw/meta.yaml
index 9c4f656b2e154..ef7ffc9504f45 100644
--- a/recipes/ksw/meta.yaml
+++ b/recipes/ksw/meta.yaml
@@ -1,15 +1,17 @@
-{% set version = "0.2.2" %}
+{% set version = "0.2.3" %}
 
 package:
   name: ksw
   version: {{ version }}
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('ksw', max_pin="x") }}
 
 source:
   url: https://github.com/nh13/ksw/releases/download/{{ version }}/{{ version }}.tar.gz
-  sha256: 0ec3bf0da5ef85e1077e6f5b26a49eb5dd7a253369df8919e5a482543f86997e
+  sha256: 77c5f670e7cd1c608679fea077543d47771f48bef8b18773b9ba6ca0032815c0
 
 requirements:
   build:
@@ -30,6 +32,7 @@ test:
 about:
   home: https://github.com/nh13/ksw
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary: 'Ksw: (interactive) smith-waterman in C'
 
diff --git a/recipes/lamassemble/meta.yaml b/recipes/lamassemble/meta.yaml
index b9c7ef92c2680..dc72a38790941 100644
--- a/recipes/lamassemble/meta.yaml
+++ b/recipes/lamassemble/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.6.1" %}
+{% set version = "1.7.2" %}
 
 package:
   name: lamassemble
@@ -6,12 +6,14 @@ package:
 
 source:
   url: https://gitlab.com/mcfrith/lamassemble/-/archive/{{ version }}/lamassemble-{{ version }}.tar.gz
-  sha256: 2c99401d0b1126fff1e0a0e70a2a0ad10a78e840d2a3a15bae122d823cb88cf9
+  sha256: 786f509c4b4b61521ff4d6bbe589acd7fdd49969bf190db345d501a823a91a75
 
 build:
   number: 0
   noarch: python
-  script: python -m pip install . --no-deps -vv
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
+  run_exports:
+    - {{ pin_subpackage('lamassemble', max_pin="x") }}
 
 requirements:
   host:
@@ -28,6 +30,7 @@ test:
 
 about:
   home: https://gitlab.com/mcfrith/lamassemble
-  summary: Merge overlapping "long" DNA reads into a consensus sequence
+  summary: 'Merge overlapping "long" DNA reads into a consensus sequence'
   license: MIT
+  license_family: MIT
   license_file: LICENSE
diff --git a/recipes/lambda/build.sh b/recipes/lambda/build.sh
index 255dd779b6597..96ebae9c79161 100644
--- a/recipes/lambda/build.sh
+++ b/recipes/lambda/build.sh
@@ -9,4 +9,4 @@ mkdir -p build
 cd build
 cmake -DLAMBDA_NATIVE_BUILD=0 ..
 make
-cp bin/lambda2 "$PREFIX/bin/"
+cp bin/lambda3 "$PREFIX/bin/"
diff --git a/recipes/lambda/meta.yaml b/recipes/lambda/meta.yaml
index 52287441f3385..e87ddb3cc388c 100644
--- a/recipes/lambda/meta.yaml
+++ b/recipes/lambda/meta.yaml
@@ -1,15 +1,18 @@
-{% set version = "2.0.1" %}
+{% set version = "3.0.0" %}
 
 package:
   name: lambda
   version: {{ version }}
 
 source:
-  url: https://github.com/seqan/lambda/archive/lambda-v{{ version }}.tar.gz
-  sha256: 35abec91722309421884a8e300fc1d3ee011a1b56eb0d0bb024e585a5b617daa
+  url: https://github.com/seqan/lambda/releases/download/lambda-v{{ version }}/lambda3-{{ version }}-SourceWithSubmodules.tar.xz
+  sha256: 48b4b72007ffc86c4aad59634721e89a990fb42cb90f2cd17f52edc60d0c6482
 
 build:
   number: 0
+  skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage('lambda', max_pin='x') }}
 
 requirements:
   build:
@@ -25,8 +28,7 @@ requirements:
 
 test:
   commands:
-    - lambda2 --help
-
+    - lambda3 --help
 
 about:
   home: http://seqan.github.io/lambda/
diff --git a/recipes/last/build.sh b/recipes/last/build.sh
new file mode 100644
index 0000000000000..869569e244d1f
--- /dev/null
+++ b/recipes/last/build.sh
@@ -0,0 +1,11 @@
+#!/usr/bin/env bash
+
+set -xe
+
+ARCH=$(uname -m)
+case ${ARCH} in
+    x86_64) ARCH_FLAGS="-msse4" ;;
+    *) ARCH_FLAGS="" ;;
+esac
+
+make install CXXFLAGS="$CXXFLAGS ${ARCH_FLAGS} -pthread" prefix=$PREFIX
\ No newline at end of file
diff --git a/recipes/last/meta.yaml b/recipes/last/meta.yaml
index ec7e9a9425a2a..7f57e5ad79a0a 100644
--- a/recipes/last/meta.yaml
+++ b/recipes/last/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "LAST" %}
-{% set version = "1454" %}
+{% set version = "1542" %}
 
 package:
   name: {{ name|lower }}
@@ -7,11 +7,12 @@ package:
 
 source:
   url: https://gitlab.com/mcfrith/last/-/archive/{{ version }}/last-{{ version }}.zip
-  sha256: 937f9f79ba0b585524b7872e04ea7e5e9be683fdf7703a123511511e2ef8873e
+  sha256: ee26e762fe76d167241f7e85b5e72ef8d17ed243c405e38dbbd06de97003596a
 
 build:
-  number: 2
-  script: make install CXXFLAGS="$CXXFLAGS -msse4 -pthread" prefix=$PREFIX
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('last', max_pin=None) }}
 
 requirements:
   build:
@@ -30,15 +31,12 @@ test:
   commands:
     - lastal -h
     - lastdb -h
-    - lastal5 -h
-    - lastdb5 -h
     - last-split -h
     - last-merge-batches -h
     - maf-convert -h
     - last-dotplot -h
     - last-map-probs -h
     - last-postmask -h
-    - last-split5 -h
     - last-train -h
     - last-pair-probs -h
     - fastq-interleave -h
@@ -54,12 +52,14 @@ test:
 about:
   home: https://gitlab.com/mcfrith/last
   license: GPL-3.0-or-later
-  license_family: GPL
+  license_family: GPL3
   license_file: COPYING.txt
   summary: "LAST finds & aligns related regions of sequences."
   description: "LAST finds & aligns related regions of sequences. It is designed for moderately large data (e.g. genomes, DNA reads, proteomes).  It's especially good at: finding rearrangements and recombinations; finding DNA-versus-protein related regions; unusual data like AT-rich DNA; sensitive DNA-DNA search."
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   container:
     extended-base: True
   identifiers:
diff --git a/recipes/lca/meta.yaml b/recipes/lca/meta.yaml
index d56ac35a6e27d..2eddf97cb5016 100644
--- a/recipes/lca/meta.yaml
+++ b/recipes/lca/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "LCA" %}
-{% set version="0.24" %}
+{% set version="0.25" %}
 
 package:
   name: {{ name|lower }}
@@ -8,10 +8,12 @@ package:
 source:
 
   url: https://github.com/hildebra/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: a0c3b76915eb9a482e6ddf426af4ef188e16ee05ba4dcb39c4d06dabee28c2e1
+  sha256: 6aead5585e87821a17c773a22bdba5229c6b7d0f44b06336b929a37c08992ce1
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x.x") }}
 
 requirements:
   build:
diff --git a/recipes/learnmsa/meta.yaml b/recipes/learnmsa/meta.yaml
index 5a1b187d99648..393e43a11f17d 100644
--- a/recipes/learnmsa/meta.yaml
+++ b/recipes/learnmsa/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "learnMSA" %}
-{% set version = "1.2.4" %}
+{% set version = "2.0.1" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,30 +7,39 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 96d83ea0d742e2a498ed9ce02adfdd657ae04204140555381ac8c591917fdb79
+  sha256: 1f1322d33a83358b989cf26569865cd89235abfecce743aab62c8b8fe3681a51
 
 build:
   number: 0
   entry_points:
     - learnMSA = learnMSA.run:run_main
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vvv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('learnmsa', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - python >=3.7
+    - python >=3.9
   run:
     - logomaker
     - networkx
     - seaborn
-    - python >=3.7
-    - tensorflow >=2.7.0
+    - python >=3.9
+    - tensorflow >=2.7.0,<2.11
+    - tensorflow-probability <=0.18.0
+    - biopython >=1.69
+    - pyfamsa
+    - transformers
+    - imageio
+    - sentencepiece
 
 test:
   imports:
     - learnMSA
     - learnMSA.msa_hmm
+    - learnMSA.protein_language_models
     - learnMSA.run
   commands:
     - learnMSA --help
@@ -46,3 +55,6 @@ about:
 extra:
   recipe-maintainers:
     - felbecker
+  identifiers:
+    - doi:10.1093/gigascience/giac104
+    - biotools:learnMSA
diff --git a/recipes/lemur/meta.yaml b/recipes/lemur/meta.yaml
new file mode 100644
index 0000000000000..1e8ba3fb9aaa2
--- /dev/null
+++ b/recipes/lemur/meta.yaml
@@ -0,0 +1,35 @@
+{% set name = "lemur" %}
+{% set version = "1.0.1" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: 'https://github.com/treangenlab/lemur/archive/refs/tags/v{{version}}.tar.gz'
+  sha256: 190b6302deabe5d09428bc541e5ab924ab6b727c30fc0c93554c2a131e7fd0d7
+
+build:
+  run_exports:
+    - {{ pin_subpackage('lemur', max_pin="x") }}
+  noarch: generic
+  number: 0
+  script: mkdir -p ${PREFIX}/bin && cp lemur ${PREFIX}/bin
+
+requirements:
+  run:
+    - python >=3.7
+    - pysam >=0.15
+    - numpy >=1.11
+    - pandas >=1.1.3
+    - minimap2 >=2.22
+
+test:
+  commands:
+    - lemur --help
+
+about:
+  home: https://github.com/treangenlab/lemur
+  license: MIT
+  license_file: LICENSE
+  summary: Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets 
diff --git a/recipes/leviosam2/meta.yaml b/recipes/leviosam2/meta.yaml
index c327ca3da988b..b039512101d06 100644
--- a/recipes/leviosam2/meta.yaml
+++ b/recipes/leviosam2/meta.yaml
@@ -1,15 +1,17 @@
-{% set version = "0.4.0" %}
+{% set version = "0.4.2" %}
 
 package:
-    name: leviosam2
-    version: {{ version }}
+  name: leviosam2
+  version: {{ version }}
 
 source:
   url: https://github.com/milkschen/leviosam2/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 2ba4c2cf99ae2913673a20a824e60d5bee497ce0121f7a0bc3e1d9ae4c503092
+  sha256: c0901f7e78e092058116a0b013286d4c452caeeaee778a24eb13301d08e56e30
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage('leviosam2', max_pin="x.x") }}
 
 requirements:
   build:
@@ -26,10 +28,17 @@ requirements:
     - zlib >=1.2.11,<1.3.0a0
 
 test:
-    commands:
+  commands:
         - leviosam2 -h
 about:
-    home: "https://github.com/milkschen/leviosam2"
-    license: MIT
-    license_file: LICENSE
-    summary: "Fast and accurate coordinate conversion between assemblies"
+  home: "https://github.com/milkschen/leviosam2"
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "Fast and accurate coordinate conversion between assemblies"
+  doc_url: "https://github.com/milkschen/leviosam2/blob/main/workflow/README.md"
+
+extra:
+  identifiers:
+    - doi:10.1093/bioinformatics/btab396
+    - doi:10.1101/2022.04.27.489683
diff --git a/recipes/libcifpp/build.sh b/recipes/libcifpp/build.sh
index b8317b473a811..fd0933e91291d 100644
--- a/recipes/libcifpp/build.sh
+++ b/recipes/libcifpp/build.sh
@@ -1,6 +1,8 @@
+#!/bin/bash
+
 mkdir build
 cd build
-cmake .. -DCMAKE_INSTALL_PREFIX=$PREFIX
+
+cmake -DCMAKE_BUILD_TYPE=Release -DBUILD_TESTING=OFF -DCIFPP_DOWNLOAD_CCD=OFF -DCMAKE_INSTALL_PREFIX=${PREFIX} -DCIFPP_INSTALL_UPDATE_SCRIPT=OFF ..
 cmake --build . --config Release
-ctest -C Release
-cmake --install . --prefix $PREFIX
+cmake --install . --prefix ${PREFIX}
diff --git a/recipes/libcifpp/meta.yaml b/recipes/libcifpp/meta.yaml
index 59df774ff3098..9bf132407346b 100644
--- a/recipes/libcifpp/meta.yaml
+++ b/recipes/libcifpp/meta.yaml
@@ -1,41 +1,47 @@
-{% set version = "5.0.0" %}
+{% set name = "libcifpp" %}
+{% set version = "7.0.4" %}
+{% set sha256 = "324eda2f6874df32671cd984c7249bfae025ca3fe1bfd875cbef35b046408b88" %}
 
 package:
-  name: libcifpp
+  name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  git_url: https://github.com/PDB-REDO/libcifpp
-  git_tag: "v{{ version }}"
-  sha256: fc1ed30d9bddddc10f32f96bb7fc9cb82430c93d012a7cd17d69678287542dec
-
-test:
-  commands:
-    - test -e $PREFIX/lib/libcifpp.a
+  url: https://github.com/PDB-REDO/{{ name|lower }}/archive/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
 
 build:
   skip: True  # [osx]
-  number: 2
+  number: 0
   run_exports:
-    - {{ pin_subpackage('libcifpp', max_pin='x.x') }}
+    - {{ pin_subpackage(name|lower, max_pin="x") }}
 
 requirements:
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
-    - boost-cpp
     - cmake
     - make
+  host:
+    - zlib
+    - boost-cpp
+  run:
+    - zlib
+    - boost-cpp
     
+test:
+  commands:
+    - test -e $PREFIX/lib/libcifpp.a
+
 about:
   home: https://github.com/PDB-REDO/libcifpp
   license: BSD-2-Clause
   license_file: LICENSE
   license_family: BSD
   summary: Library containing code to manipulate mmCIF and PDB files
+  doc_url: https://pdb-redo.github.io/libcifpp/
+  dev_url: https://github.com/PDB-REDO/libcifpp
 
 extra:
   recipe-maintainers:
     - multimeric
-  skip-lints:
-    - uses_vcs_url
diff --git a/recipes/libdivsufsort/build.sh b/recipes/libdivsufsort/build.sh
index e718d739a426f..6223bbe07918f 100644
--- a/recipes/libdivsufsort/build.sh
+++ b/recipes/libdivsufsort/build.sh
@@ -4,5 +4,5 @@ mkdir -p $PREFIX/bin
 mkdir build
 cd build
 cmake -DCMAKE_BUILD_TYPE="Release" -DCMAKE_INSTALL_PREFIX=$PREFIX -DBUILD_DIVSUFSORT64="On" ..
-make
+make -j ${CPU_COUNT}
 make install
diff --git a/recipes/libdivsufsort/meta.yaml b/recipes/libdivsufsort/meta.yaml
index 35dd09fbddfd9..027973b1c178a 100644
--- a/recipes/libdivsufsort/meta.yaml
+++ b/recipes/libdivsufsort/meta.yaml
@@ -6,7 +6,7 @@ package:
   version: {{ version }}
 
 build:
-  number: 8
+  number: 9
   run_exports:
     - {{ pin_subpackage('libdivsufsort', max_pin='x.x') }}
 
@@ -33,3 +33,6 @@ about:
   license_file: LICENSE
   summary: 'A lightweight suffix-sorting library'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/libgtextutils/build.sh b/recipes/libgtextutils/build.sh
index 11dbe2c56199c..c96265be7797c 100755
--- a/recipes/libgtextutils/build.sh
+++ b/recipes/libgtextutils/build.sh
@@ -1,5 +1,7 @@
 #!/bin/bash
 
+set -xe
+
 if [ "$(uname)" == "Darwin" ]; then
     # building the library requires an implementation of basic_stringbuf
     # from the c++ standard library
@@ -7,6 +9,9 @@ if [ "$(uname)" == "Darwin" ]; then
     MACOSX_DEPLOYMENT_TARGET=10.9
 fi
 
+# use newer config.guess and config.sub that support linux-aarch64
+cp ${RECIPE_DIR}/config.* ./config/
+
 ./configure --prefix=$PREFIX
-make
+make -j ${CPU_COUNT}
 make install
diff --git a/recipes/libgtextutils/config.guess b/recipes/libgtextutils/config.guess
new file mode 100644
index 0000000000000..1972fda8eb05d
--- /dev/null
+++ b/recipes/libgtextutils/config.guess
@@ -0,0 +1,1700 @@
+#! /bin/sh
+# Attempt to guess a canonical system name.
+#   Copyright 1992-2021 Free Software Foundation, Inc.
+
+timestamp='2021-01-25'
+
+# This file is free software; you can redistribute it and/or modify it
+# under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+# General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, see <https://www.gnu.org/licenses/>.
+#
+# As a special exception to the GNU General Public License, if you
+# distribute this file as part of a program that contains a
+# configuration script generated by Autoconf, you may include it under
+# the same distribution terms that you use for the rest of that
+# program.  This Exception is an additional permission under section 7
+# of the GNU General Public License, version 3 ("GPLv3").
+#
+# Originally written by Per Bothner; maintained since 2000 by Ben Elliston.
+#
+# You can get the latest version of this script from:
+# https://git.savannah.gnu.org/cgit/config.git/plain/config.guess
+#
+# Please send patches to <config-patches@gnu.org>.
+
+
+me=$(echo "$0" | sed -e 's,.*/,,')
+
+usage="\
+Usage: $0 [OPTION]
+
+Output the configuration name of the system \`$me' is run on.
+
+Options:
+  -h, --help         print this help, then exit
+  -t, --time-stamp   print date of last modification, then exit
+  -v, --version      print version number, then exit
+
+Report bugs and patches to <config-patches@gnu.org>."
+
+version="\
+GNU config.guess ($timestamp)
+
+Originally written by Per Bothner.
+Copyright 1992-2021 Free Software Foundation, Inc.
+
+This is free software; see the source for copying conditions.  There is NO
+warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE."
+
+help="
+Try \`$me --help' for more information."
+
+# Parse command line
+while test $# -gt 0 ; do
+  case $1 in
+    --time-stamp | --time* | -t )
+       echo "$timestamp" ; exit ;;
+    --version | -v )
+       echo "$version" ; exit ;;
+    --help | --h* | -h )
+       echo "$usage"; exit ;;
+    -- )     # Stop option processing
+       shift; break ;;
+    - )	# Use stdin as input.
+       break ;;
+    -* )
+       echo "$me: invalid option $1$help" >&2
+       exit 1 ;;
+    * )
+       break ;;
+  esac
+done
+
+if test $# != 0; then
+  echo "$me: too many arguments$help" >&2
+  exit 1
+fi
+
+# CC_FOR_BUILD -- compiler used by this script. Note that the use of a
+# compiler to aid in system detection is discouraged as it requires
+# temporary files to be created and, as you can see below, it is a
+# headache to deal with in a portable fashion.
+
+# Historically, `CC_FOR_BUILD' used to be named `HOST_CC'. We still
+# use `HOST_CC' if defined, but it is deprecated.
+
+# Portable tmp directory creation inspired by the Autoconf team.
+
+tmp=
+# shellcheck disable=SC2172
+trap 'test -z "$tmp" || rm -fr "$tmp"' 0 1 2 13 15
+
+set_cc_for_build() {
+    # prevent multiple calls if $tmp is already set
+    test "$tmp" && return 0
+    : "${TMPDIR=/tmp}"
+    # shellcheck disable=SC2039
+    { tmp=$( (umask 077 && mktemp -d "$TMPDIR/cgXXXXXX") 2>/dev/null) && test -n "$tmp" && test -d "$tmp" ; } ||
+	{ test -n "$RANDOM" && tmp=$TMPDIR/cg$$-$RANDOM && (umask 077 && mkdir "$tmp" 2>/dev/null) ; } ||
+	{ tmp=$TMPDIR/cg-$$ && (umask 077 && mkdir "$tmp" 2>/dev/null) && echo "Warning: creating insecure temp directory" >&2 ; } ||
+	{ echo "$me: cannot create a temporary directory in $TMPDIR" >&2 ; exit 1 ; }
+    dummy=$tmp/dummy
+    case ${CC_FOR_BUILD-},${HOST_CC-},${CC-} in
+	,,)    echo "int x;" > "$dummy.c"
+	       for driver in cc gcc c89 c99 ; do
+		   if ($driver -c -o "$dummy.o" "$dummy.c") >/dev/null 2>&1 ; then
+		       CC_FOR_BUILD="$driver"
+		       break
+		   fi
+	       done
+	       if test x"$CC_FOR_BUILD" = x ; then
+		   CC_FOR_BUILD=no_compiler_found
+	       fi
+	       ;;
+	,,*)   CC_FOR_BUILD=$CC ;;
+	,*,*)  CC_FOR_BUILD=$HOST_CC ;;
+    esac
+}
+
+# This is needed to find uname on a Pyramid OSx when run in the BSD universe.
+# (ghazi@noc.rutgers.edu 1994-08-24)
+if test -f /.attbin/uname ; then
+	PATH=$PATH:/.attbin ; export PATH
+fi
+
+UNAME_MACHINE=$( (uname -m) 2>/dev/null) || UNAME_MACHINE=unknown
+UNAME_RELEASE=$( (uname -r) 2>/dev/null) || UNAME_RELEASE=unknown
+UNAME_SYSTEM=$( (uname -s) 2>/dev/null) || UNAME_SYSTEM=unknown
+UNAME_VERSION=$( (uname -v) 2>/dev/null) || UNAME_VERSION=unknown
+
+case "$UNAME_SYSTEM" in
+Linux|GNU|GNU/*)
+	LIBC=unknown
+
+	set_cc_for_build
+	cat <<-EOF > "$dummy.c"
+	#include <features.h>
+	#if defined(__UCLIBC__)
+	LIBC=uclibc
+	#elif defined(__dietlibc__)
+	LIBC=dietlibc
+	#elif defined(__GLIBC__)
+	LIBC=gnu
+	#else
+	#include <stdarg.h>
+	/* First heuristic to detect musl libc.  */
+	#ifdef __DEFINED_va_list
+	LIBC=musl
+	#endif
+	#endif
+	EOF
+	eval "$($CC_FOR_BUILD -E "$dummy.c" 2>/dev/null | grep '^LIBC' | sed 's, ,,g')"
+
+	# Second heuristic to detect musl libc.
+	if [ "$LIBC" = unknown ] &&
+	   command -v ldd >/dev/null &&
+	   ldd --version 2>&1 | grep -q ^musl; then
+		LIBC=musl
+	fi
+
+	# If the system lacks a compiler, then just pick glibc.
+	# We could probably try harder.
+	if [ "$LIBC" = unknown ]; then
+		LIBC=gnu
+	fi
+	;;
+esac
+
+# Note: order is significant - the case branches are not exclusive.
+
+case "$UNAME_MACHINE:$UNAME_SYSTEM:$UNAME_RELEASE:$UNAME_VERSION" in
+    *:NetBSD:*:*)
+	# NetBSD (nbsd) targets should (where applicable) match one or
+	# more of the tuples: *-*-netbsdelf*, *-*-netbsdaout*,
+	# *-*-netbsdecoff* and *-*-netbsd*.  For targets that recently
+	# switched to ELF, *-*-netbsd* would select the old
+	# object file format.  This provides both forward
+	# compatibility and a consistent mechanism for selecting the
+	# object file format.
+	#
+	# Note: NetBSD doesn't particularly care about the vendor
+	# portion of the name.  We always set it to "unknown".
+	UNAME_MACHINE_ARCH=$( (uname -p 2>/dev/null || \
+	    /sbin/sysctl -n hw.machine_arch 2>/dev/null || \
+	    /usr/sbin/sysctl -n hw.machine_arch 2>/dev/null || \
+	    echo unknown))
+	case "$UNAME_MACHINE_ARCH" in
+	    aarch64eb) machine=aarch64_be-unknown ;;
+	    armeb) machine=armeb-unknown ;;
+	    arm*) machine=arm-unknown ;;
+	    sh3el) machine=shl-unknown ;;
+	    sh3eb) machine=sh-unknown ;;
+	    sh5el) machine=sh5le-unknown ;;
+	    earmv*)
+		arch=$(echo "$UNAME_MACHINE_ARCH" | sed -e 's,^e\(armv[0-9]\).*$,\1,')
+		endian=$(echo "$UNAME_MACHINE_ARCH" | sed -ne 's,^.*\(eb\)$,\1,p')
+		machine="${arch}${endian}"-unknown
+		;;
+	    *) machine="$UNAME_MACHINE_ARCH"-unknown ;;
+	esac
+	# The Operating System including object format, if it has switched
+	# to ELF recently (or will in the future) and ABI.
+	case "$UNAME_MACHINE_ARCH" in
+	    earm*)
+		os=netbsdelf
+		;;
+	    arm*|i386|m68k|ns32k|sh3*|sparc|vax)
+		set_cc_for_build
+		if echo __ELF__ | $CC_FOR_BUILD -E - 2>/dev/null \
+			| grep -q __ELF__
+		then
+		    # Once all utilities can be ECOFF (netbsdecoff) or a.out (netbsdaout).
+		    # Return netbsd for either.  FIX?
+		    os=netbsd
+		else
+		    os=netbsdelf
+		fi
+		;;
+	    *)
+		os=netbsd
+		;;
+	esac
+	# Determine ABI tags.
+	case "$UNAME_MACHINE_ARCH" in
+	    earm*)
+		expr='s/^earmv[0-9]/-eabi/;s/eb$//'
+		abi=$(echo "$UNAME_MACHINE_ARCH" | sed -e "$expr")
+		;;
+	esac
+	# The OS release
+	# Debian GNU/NetBSD machines have a different userland, and
+	# thus, need a distinct triplet. However, they do not need
+	# kernel version information, so it can be replaced with a
+	# suitable tag, in the style of linux-gnu.
+	case "$UNAME_VERSION" in
+	    Debian*)
+		release='-gnu'
+		;;
+	    *)
+		release=$(echo "$UNAME_RELEASE" | sed -e 's/[-_].*//' | cut -d. -f1,2)
+		;;
+	esac
+	# Since CPU_TYPE-MANUFACTURER-KERNEL-OPERATING_SYSTEM:
+	# contains redundant information, the shorter form:
+	# CPU_TYPE-MANUFACTURER-OPERATING_SYSTEM is used.
+	echo "$machine-${os}${release}${abi-}"
+	exit ;;
+    *:Bitrig:*:*)
+	UNAME_MACHINE_ARCH=$(arch | sed 's/Bitrig.//')
+	echo "$UNAME_MACHINE_ARCH"-unknown-bitrig"$UNAME_RELEASE"
+	exit ;;
+    *:OpenBSD:*:*)
+	UNAME_MACHINE_ARCH=$(arch | sed 's/OpenBSD.//')
+	echo "$UNAME_MACHINE_ARCH"-unknown-openbsd"$UNAME_RELEASE"
+	exit ;;
+    *:LibertyBSD:*:*)
+	UNAME_MACHINE_ARCH=$(arch | sed 's/^.*BSD\.//')
+	echo "$UNAME_MACHINE_ARCH"-unknown-libertybsd"$UNAME_RELEASE"
+	exit ;;
+    *:MidnightBSD:*:*)
+	echo "$UNAME_MACHINE"-unknown-midnightbsd"$UNAME_RELEASE"
+	exit ;;
+    *:ekkoBSD:*:*)
+	echo "$UNAME_MACHINE"-unknown-ekkobsd"$UNAME_RELEASE"
+	exit ;;
+    *:SolidBSD:*:*)
+	echo "$UNAME_MACHINE"-unknown-solidbsd"$UNAME_RELEASE"
+	exit ;;
+    *:OS108:*:*)
+	echo "$UNAME_MACHINE"-unknown-os108_"$UNAME_RELEASE"
+	exit ;;
+    macppc:MirBSD:*:*)
+	echo powerpc-unknown-mirbsd"$UNAME_RELEASE"
+	exit ;;
+    *:MirBSD:*:*)
+	echo "$UNAME_MACHINE"-unknown-mirbsd"$UNAME_RELEASE"
+	exit ;;
+    *:Sortix:*:*)
+	echo "$UNAME_MACHINE"-unknown-sortix
+	exit ;;
+    *:Twizzler:*:*)
+	echo "$UNAME_MACHINE"-unknown-twizzler
+	exit ;;
+    *:Redox:*:*)
+	echo "$UNAME_MACHINE"-unknown-redox
+	exit ;;
+    mips:OSF1:*.*)
+	echo mips-dec-osf1
+	exit ;;
+    alpha:OSF1:*:*)
+	case $UNAME_RELEASE in
+	*4.0)
+		UNAME_RELEASE=$(/usr/sbin/sizer -v | awk '{print $3}')
+		;;
+	*5.*)
+		UNAME_RELEASE=$(/usr/sbin/sizer -v | awk '{print $4}')
+		;;
+	esac
+	# According to Compaq, /usr/sbin/psrinfo has been available on
+	# OSF/1 and Tru64 systems produced since 1995.  I hope that
+	# covers most systems running today.  This code pipes the CPU
+	# types through head -n 1, so we only detect the type of CPU 0.
+	ALPHA_CPU_TYPE=$(/usr/sbin/psrinfo -v | sed -n -e 's/^  The alpha \(.*\) processor.*$/\1/p' | head -n 1)
+	case "$ALPHA_CPU_TYPE" in
+	    "EV4 (21064)")
+		UNAME_MACHINE=alpha ;;
+	    "EV4.5 (21064)")
+		UNAME_MACHINE=alpha ;;
+	    "LCA4 (21066/21068)")
+		UNAME_MACHINE=alpha ;;
+	    "EV5 (21164)")
+		UNAME_MACHINE=alphaev5 ;;
+	    "EV5.6 (21164A)")
+		UNAME_MACHINE=alphaev56 ;;
+	    "EV5.6 (21164PC)")
+		UNAME_MACHINE=alphapca56 ;;
+	    "EV5.7 (21164PC)")
+		UNAME_MACHINE=alphapca57 ;;
+	    "EV6 (21264)")
+		UNAME_MACHINE=alphaev6 ;;
+	    "EV6.7 (21264A)")
+		UNAME_MACHINE=alphaev67 ;;
+	    "EV6.8CB (21264C)")
+		UNAME_MACHINE=alphaev68 ;;
+	    "EV6.8AL (21264B)")
+		UNAME_MACHINE=alphaev68 ;;
+	    "EV6.8CX (21264D)")
+		UNAME_MACHINE=alphaev68 ;;
+	    "EV6.9A (21264/EV69A)")
+		UNAME_MACHINE=alphaev69 ;;
+	    "EV7 (21364)")
+		UNAME_MACHINE=alphaev7 ;;
+	    "EV7.9 (21364A)")
+		UNAME_MACHINE=alphaev79 ;;
+	esac
+	# A Pn.n version is a patched version.
+	# A Vn.n version is a released version.
+	# A Tn.n version is a released field test version.
+	# A Xn.n version is an unreleased experimental baselevel.
+	# 1.2 uses "1.2" for uname -r.
+	echo "$UNAME_MACHINE"-dec-osf"$(echo "$UNAME_RELEASE" | sed -e 's/^[PVTX]//' | tr ABCDEFGHIJKLMNOPQRSTUVWXYZ abcdefghijklmnopqrstuvwxyz)"
+	# Reset EXIT trap before exiting to avoid spurious non-zero exit code.
+	exitcode=$?
+	trap '' 0
+	exit $exitcode ;;
+    Amiga*:UNIX_System_V:4.0:*)
+	echo m68k-unknown-sysv4
+	exit ;;
+    *:[Aa]miga[Oo][Ss]:*:*)
+	echo "$UNAME_MACHINE"-unknown-amigaos
+	exit ;;
+    *:[Mm]orph[Oo][Ss]:*:*)
+	echo "$UNAME_MACHINE"-unknown-morphos
+	exit ;;
+    *:OS/390:*:*)
+	echo i370-ibm-openedition
+	exit ;;
+    *:z/VM:*:*)
+	echo s390-ibm-zvmoe
+	exit ;;
+    *:OS400:*:*)
+	echo powerpc-ibm-os400
+	exit ;;
+    arm:RISC*:1.[012]*:*|arm:riscix:1.[012]*:*)
+	echo arm-acorn-riscix"$UNAME_RELEASE"
+	exit ;;
+    arm*:riscos:*:*|arm*:RISCOS:*:*)
+	echo arm-unknown-riscos
+	exit ;;
+    SR2?01:HI-UX/MPP:*:* | SR8000:HI-UX/MPP:*:*)
+	echo hppa1.1-hitachi-hiuxmpp
+	exit ;;
+    Pyramid*:OSx*:*:* | MIS*:OSx*:*:* | MIS*:SMP_DC-OSx*:*:*)
+	# akee@wpdis03.wpafb.af.mil (Earle F. Ake) contributed MIS and NILE.
+	if test "$( (/bin/universe) 2>/dev/null)" = att ; then
+		echo pyramid-pyramid-sysv3
+	else
+		echo pyramid-pyramid-bsd
+	fi
+	exit ;;
+    NILE*:*:*:dcosx)
+	echo pyramid-pyramid-svr4
+	exit ;;
+    DRS?6000:unix:4.0:6*)
+	echo sparc-icl-nx6
+	exit ;;
+    DRS?6000:UNIX_SV:4.2*:7* | DRS?6000:isis:4.2*:7*)
+	case $(/usr/bin/uname -p) in
+	    sparc) echo sparc-icl-nx7; exit ;;
+	esac ;;
+    s390x:SunOS:*:*)
+	echo "$UNAME_MACHINE"-ibm-solaris2"$(echo "$UNAME_RELEASE" | sed -e 's/[^.]*//')"
+	exit ;;
+    sun4H:SunOS:5.*:*)
+	echo sparc-hal-solaris2"$(echo "$UNAME_RELEASE"|sed -e 's/[^.]*//')"
+	exit ;;
+    sun4*:SunOS:5.*:* | tadpole*:SunOS:5.*:*)
+	echo sparc-sun-solaris2"$(echo "$UNAME_RELEASE" | sed -e 's/[^.]*//')"
+	exit ;;
+    i86pc:AuroraUX:5.*:* | i86xen:AuroraUX:5.*:*)
+	echo i386-pc-auroraux"$UNAME_RELEASE"
+	exit ;;
+    i86pc:SunOS:5.*:* | i86xen:SunOS:5.*:*)
+	set_cc_for_build
+	SUN_ARCH=i386
+	# If there is a compiler, see if it is configured for 64-bit objects.
+	# Note that the Sun cc does not turn __LP64__ into 1 like gcc does.
+	# This test works for both compilers.
+	if test "$CC_FOR_BUILD" != no_compiler_found; then
+	    if (echo '#ifdef __amd64'; echo IS_64BIT_ARCH; echo '#endif') | \
+		(CCOPTS="" $CC_FOR_BUILD -E - 2>/dev/null) | \
+		grep IS_64BIT_ARCH >/dev/null
+	    then
+		SUN_ARCH=x86_64
+	    fi
+	fi
+	echo "$SUN_ARCH"-pc-solaris2"$(echo "$UNAME_RELEASE"|sed -e 's/[^.]*//')"
+	exit ;;
+    sun4*:SunOS:6*:*)
+	# According to config.sub, this is the proper way to canonicalize
+	# SunOS6.  Hard to guess exactly what SunOS6 will be like, but
+	# it's likely to be more like Solaris than SunOS4.
+	echo sparc-sun-solaris3"$(echo "$UNAME_RELEASE"|sed -e 's/[^.]*//')"
+	exit ;;
+    sun4*:SunOS:*:*)
+	case "$(/usr/bin/arch -k)" in
+	    Series*|S4*)
+		UNAME_RELEASE=$(uname -v)
+		;;
+	esac
+	# Japanese Language versions have a version number like `4.1.3-JL'.
+	echo sparc-sun-sunos"$(echo "$UNAME_RELEASE"|sed -e 's/-/_/')"
+	exit ;;
+    sun3*:SunOS:*:*)
+	echo m68k-sun-sunos"$UNAME_RELEASE"
+	exit ;;
+    sun*:*:4.2BSD:*)
+	UNAME_RELEASE=$( (sed 1q /etc/motd | awk '{print substr($5,1,3)}') 2>/dev/null)
+	test "x$UNAME_RELEASE" = x && UNAME_RELEASE=3
+	case "$(/bin/arch)" in
+	    sun3)
+		echo m68k-sun-sunos"$UNAME_RELEASE"
+		;;
+	    sun4)
+		echo sparc-sun-sunos"$UNAME_RELEASE"
+		;;
+	esac
+	exit ;;
+    aushp:SunOS:*:*)
+	echo sparc-auspex-sunos"$UNAME_RELEASE"
+	exit ;;
+    # The situation for MiNT is a little confusing.  The machine name
+    # can be virtually everything (everything which is not
+    # "atarist" or "atariste" at least should have a processor
+    # > m68000).  The system name ranges from "MiNT" over "FreeMiNT"
+    # to the lowercase version "mint" (or "freemint").  Finally
+    # the system name "TOS" denotes a system which is actually not
+    # MiNT.  But MiNT is downward compatible to TOS, so this should
+    # be no problem.
+    atarist[e]:*MiNT:*:* | atarist[e]:*mint:*:* | atarist[e]:*TOS:*:*)
+	echo m68k-atari-mint"$UNAME_RELEASE"
+	exit ;;
+    atari*:*MiNT:*:* | atari*:*mint:*:* | atarist[e]:*TOS:*:*)
+	echo m68k-atari-mint"$UNAME_RELEASE"
+	exit ;;
+    *falcon*:*MiNT:*:* | *falcon*:*mint:*:* | *falcon*:*TOS:*:*)
+	echo m68k-atari-mint"$UNAME_RELEASE"
+	exit ;;
+    milan*:*MiNT:*:* | milan*:*mint:*:* | *milan*:*TOS:*:*)
+	echo m68k-milan-mint"$UNAME_RELEASE"
+	exit ;;
+    hades*:*MiNT:*:* | hades*:*mint:*:* | *hades*:*TOS:*:*)
+	echo m68k-hades-mint"$UNAME_RELEASE"
+	exit ;;
+    *:*MiNT:*:* | *:*mint:*:* | *:*TOS:*:*)
+	echo m68k-unknown-mint"$UNAME_RELEASE"
+	exit ;;
+    m68k:machten:*:*)
+	echo m68k-apple-machten"$UNAME_RELEASE"
+	exit ;;
+    powerpc:machten:*:*)
+	echo powerpc-apple-machten"$UNAME_RELEASE"
+	exit ;;
+    RISC*:Mach:*:*)
+	echo mips-dec-mach_bsd4.3
+	exit ;;
+    RISC*:ULTRIX:*:*)
+	echo mips-dec-ultrix"$UNAME_RELEASE"
+	exit ;;
+    VAX*:ULTRIX*:*:*)
+	echo vax-dec-ultrix"$UNAME_RELEASE"
+	exit ;;
+    2020:CLIX:*:* | 2430:CLIX:*:*)
+	echo clipper-intergraph-clix"$UNAME_RELEASE"
+	exit ;;
+    mips:*:*:UMIPS | mips:*:*:RISCos)
+	set_cc_for_build
+	sed 's/^	//' << EOF > "$dummy.c"
+#ifdef __cplusplus
+#include <stdio.h>  /* for printf() prototype */
+	int main (int argc, char *argv[]) {
+#else
+	int main (argc, argv) int argc; char *argv[]; {
+#endif
+	#if defined (host_mips) && defined (MIPSEB)
+	#if defined (SYSTYPE_SYSV)
+	  printf ("mips-mips-riscos%ssysv\\n", argv[1]); exit (0);
+	#endif
+	#if defined (SYSTYPE_SVR4)
+	  printf ("mips-mips-riscos%ssvr4\\n", argv[1]); exit (0);
+	#endif
+	#if defined (SYSTYPE_BSD43) || defined(SYSTYPE_BSD)
+	  printf ("mips-mips-riscos%sbsd\\n", argv[1]); exit (0);
+	#endif
+	#endif
+	  exit (-1);
+	}
+EOF
+	$CC_FOR_BUILD -o "$dummy" "$dummy.c" &&
+	  dummyarg=$(echo "$UNAME_RELEASE" | sed -n 's/\([0-9]*\).*/\1/p') &&
+	  SYSTEM_NAME=$("$dummy" "$dummyarg") &&
+	    { echo "$SYSTEM_NAME"; exit; }
+	echo mips-mips-riscos"$UNAME_RELEASE"
+	exit ;;
+    Motorola:PowerMAX_OS:*:*)
+	echo powerpc-motorola-powermax
+	exit ;;
+    Motorola:*:4.3:PL8-*)
+	echo powerpc-harris-powermax
+	exit ;;
+    Night_Hawk:*:*:PowerMAX_OS | Synergy:PowerMAX_OS:*:*)
+	echo powerpc-harris-powermax
+	exit ;;
+    Night_Hawk:Power_UNIX:*:*)
+	echo powerpc-harris-powerunix
+	exit ;;
+    m88k:CX/UX:7*:*)
+	echo m88k-harris-cxux7
+	exit ;;
+    m88k:*:4*:R4*)
+	echo m88k-motorola-sysv4
+	exit ;;
+    m88k:*:3*:R3*)
+	echo m88k-motorola-sysv3
+	exit ;;
+    AViiON:dgux:*:*)
+	# DG/UX returns AViiON for all architectures
+	UNAME_PROCESSOR=$(/usr/bin/uname -p)
+	if test "$UNAME_PROCESSOR" = mc88100 || test "$UNAME_PROCESSOR" = mc88110
+	then
+	    if test "$TARGET_BINARY_INTERFACE"x = m88kdguxelfx || \
+	       test "$TARGET_BINARY_INTERFACE"x = x
+	    then
+		echo m88k-dg-dgux"$UNAME_RELEASE"
+	    else
+		echo m88k-dg-dguxbcs"$UNAME_RELEASE"
+	    fi
+	else
+	    echo i586-dg-dgux"$UNAME_RELEASE"
+	fi
+	exit ;;
+    M88*:DolphinOS:*:*)	# DolphinOS (SVR3)
+	echo m88k-dolphin-sysv3
+	exit ;;
+    M88*:*:R3*:*)
+	# Delta 88k system running SVR3
+	echo m88k-motorola-sysv3
+	exit ;;
+    XD88*:*:*:*) # Tektronix XD88 system running UTekV (SVR3)
+	echo m88k-tektronix-sysv3
+	exit ;;
+    Tek43[0-9][0-9]:UTek:*:*) # Tektronix 4300 system running UTek (BSD)
+	echo m68k-tektronix-bsd
+	exit ;;
+    *:IRIX*:*:*)
+	echo mips-sgi-irix"$(echo "$UNAME_RELEASE"|sed -e 's/-/_/g')"
+	exit ;;
+    ????????:AIX?:[12].1:2)   # AIX 2.2.1 or AIX 2.1.1 is RT/PC AIX.
+	echo romp-ibm-aix     # uname -m gives an 8 hex-code CPU id
+	exit ;;               # Note that: echo "'$(uname -s)'" gives 'AIX '
+    i*86:AIX:*:*)
+	echo i386-ibm-aix
+	exit ;;
+    ia64:AIX:*:*)
+	if test -x /usr/bin/oslevel ; then
+		IBM_REV=$(/usr/bin/oslevel)
+	else
+		IBM_REV="$UNAME_VERSION.$UNAME_RELEASE"
+	fi
+	echo "$UNAME_MACHINE"-ibm-aix"$IBM_REV"
+	exit ;;
+    *:AIX:2:3)
+	if grep bos325 /usr/include/stdio.h >/dev/null 2>&1; then
+		set_cc_for_build
+		sed 's/^		//' << EOF > "$dummy.c"
+		#include <sys/systemcfg.h>
+
+		main()
+			{
+			if (!__power_pc())
+				exit(1);
+			puts("powerpc-ibm-aix3.2.5");
+			exit(0);
+			}
+EOF
+		if $CC_FOR_BUILD -o "$dummy" "$dummy.c" && SYSTEM_NAME=$("$dummy")
+		then
+			echo "$SYSTEM_NAME"
+		else
+			echo rs6000-ibm-aix3.2.5
+		fi
+	elif grep bos324 /usr/include/stdio.h >/dev/null 2>&1; then
+		echo rs6000-ibm-aix3.2.4
+	else
+		echo rs6000-ibm-aix3.2
+	fi
+	exit ;;
+    *:AIX:*:[4567])
+	IBM_CPU_ID=$(/usr/sbin/lsdev -C -c processor -S available | sed 1q | awk '{ print $1 }')
+	if /usr/sbin/lsattr -El "$IBM_CPU_ID" | grep ' POWER' >/dev/null 2>&1; then
+		IBM_ARCH=rs6000
+	else
+		IBM_ARCH=powerpc
+	fi
+	if test -x /usr/bin/lslpp ; then
+		IBM_REV=$(/usr/bin/lslpp -Lqc bos.rte.libc |
+			   awk -F: '{ print $3 }' | sed s/[0-9]*$/0/)
+	else
+		IBM_REV="$UNAME_VERSION.$UNAME_RELEASE"
+	fi
+	echo "$IBM_ARCH"-ibm-aix"$IBM_REV"
+	exit ;;
+    *:AIX:*:*)
+	echo rs6000-ibm-aix
+	exit ;;
+    ibmrt:4.4BSD:*|romp-ibm:4.4BSD:*)
+	echo romp-ibm-bsd4.4
+	exit ;;
+    ibmrt:*BSD:*|romp-ibm:BSD:*)            # covers RT/PC BSD and
+	echo romp-ibm-bsd"$UNAME_RELEASE"   # 4.3 with uname added to
+	exit ;;                             # report: romp-ibm BSD 4.3
+    *:BOSX:*:*)
+	echo rs6000-bull-bosx
+	exit ;;
+    DPX/2?00:B.O.S.:*:*)
+	echo m68k-bull-sysv3
+	exit ;;
+    9000/[34]??:4.3bsd:1.*:*)
+	echo m68k-hp-bsd
+	exit ;;
+    hp300:4.4BSD:*:* | 9000/[34]??:4.3bsd:2.*:*)
+	echo m68k-hp-bsd4.4
+	exit ;;
+    9000/[34678]??:HP-UX:*:*)
+	HPUX_REV=$(echo "$UNAME_RELEASE"|sed -e 's/[^.]*.[0B]*//')
+	case "$UNAME_MACHINE" in
+	    9000/31?)            HP_ARCH=m68000 ;;
+	    9000/[34]??)         HP_ARCH=m68k ;;
+	    9000/[678][0-9][0-9])
+		if test -x /usr/bin/getconf; then
+		    sc_cpu_version=$(/usr/bin/getconf SC_CPU_VERSION 2>/dev/null)
+		    sc_kernel_bits=$(/usr/bin/getconf SC_KERNEL_BITS 2>/dev/null)
+		    case "$sc_cpu_version" in
+		      523) HP_ARCH=hppa1.0 ;; # CPU_PA_RISC1_0
+		      528) HP_ARCH=hppa1.1 ;; # CPU_PA_RISC1_1
+		      532)                      # CPU_PA_RISC2_0
+			case "$sc_kernel_bits" in
+			  32) HP_ARCH=hppa2.0n ;;
+			  64) HP_ARCH=hppa2.0w ;;
+			  '') HP_ARCH=hppa2.0 ;;   # HP-UX 10.20
+			esac ;;
+		    esac
+		fi
+		if test "$HP_ARCH" = ""; then
+		    set_cc_for_build
+		    sed 's/^		//' << EOF > "$dummy.c"
+
+		#define _HPUX_SOURCE
+		#include <stdlib.h>
+		#include <unistd.h>
+
+		int main ()
+		{
+		#if defined(_SC_KERNEL_BITS)
+		    long bits = sysconf(_SC_KERNEL_BITS);
+		#endif
+		    long cpu  = sysconf (_SC_CPU_VERSION);
+
+		    switch (cpu)
+			{
+			case CPU_PA_RISC1_0: puts ("hppa1.0"); break;
+			case CPU_PA_RISC1_1: puts ("hppa1.1"); break;
+			case CPU_PA_RISC2_0:
+		#if defined(_SC_KERNEL_BITS)
+			    switch (bits)
+				{
+				case 64: puts ("hppa2.0w"); break;
+				case 32: puts ("hppa2.0n"); break;
+				default: puts ("hppa2.0"); break;
+				} break;
+		#else  /* !defined(_SC_KERNEL_BITS) */
+			    puts ("hppa2.0"); break;
+		#endif
+			default: puts ("hppa1.0"); break;
+			}
+		    exit (0);
+		}
+EOF
+		    (CCOPTS="" $CC_FOR_BUILD -o "$dummy" "$dummy.c" 2>/dev/null) && HP_ARCH=$("$dummy")
+		    test -z "$HP_ARCH" && HP_ARCH=hppa
+		fi ;;
+	esac
+	if test "$HP_ARCH" = hppa2.0w
+	then
+	    set_cc_for_build
+
+	    # hppa2.0w-hp-hpux* has a 64-bit kernel and a compiler generating
+	    # 32-bit code.  hppa64-hp-hpux* has the same kernel and a compiler
+	    # generating 64-bit code.  GNU and HP use different nomenclature:
+	    #
+	    # $ CC_FOR_BUILD=cc ./config.guess
+	    # => hppa2.0w-hp-hpux11.23
+	    # $ CC_FOR_BUILD="cc +DA2.0w" ./config.guess
+	    # => hppa64-hp-hpux11.23
+
+	    if echo __LP64__ | (CCOPTS="" $CC_FOR_BUILD -E - 2>/dev/null) |
+		grep -q __LP64__
+	    then
+		HP_ARCH=hppa2.0w
+	    else
+		HP_ARCH=hppa64
+	    fi
+	fi
+	echo "$HP_ARCH"-hp-hpux"$HPUX_REV"
+	exit ;;
+    ia64:HP-UX:*:*)
+	HPUX_REV=$(echo "$UNAME_RELEASE"|sed -e 's/[^.]*.[0B]*//')
+	echo ia64-hp-hpux"$HPUX_REV"
+	exit ;;
+    3050*:HI-UX:*:*)
+	set_cc_for_build
+	sed 's/^	//' << EOF > "$dummy.c"
+	#include <unistd.h>
+	int
+	main ()
+	{
+	  long cpu = sysconf (_SC_CPU_VERSION);
+	  /* The order matters, because CPU_IS_HP_MC68K erroneously returns
+	     true for CPU_PA_RISC1_0.  CPU_IS_PA_RISC returns correct
+	     results, however.  */
+	  if (CPU_IS_PA_RISC (cpu))
+	    {
+	      switch (cpu)
+		{
+		  case CPU_PA_RISC1_0: puts ("hppa1.0-hitachi-hiuxwe2"); break;
+		  case CPU_PA_RISC1_1: puts ("hppa1.1-hitachi-hiuxwe2"); break;
+		  case CPU_PA_RISC2_0: puts ("hppa2.0-hitachi-hiuxwe2"); break;
+		  default: puts ("hppa-hitachi-hiuxwe2"); break;
+		}
+	    }
+	  else if (CPU_IS_HP_MC68K (cpu))
+	    puts ("m68k-hitachi-hiuxwe2");
+	  else puts ("unknown-hitachi-hiuxwe2");
+	  exit (0);
+	}
+EOF
+	$CC_FOR_BUILD -o "$dummy" "$dummy.c" && SYSTEM_NAME=$("$dummy") &&
+		{ echo "$SYSTEM_NAME"; exit; }
+	echo unknown-hitachi-hiuxwe2
+	exit ;;
+    9000/7??:4.3bsd:*:* | 9000/8?[79]:4.3bsd:*:*)
+	echo hppa1.1-hp-bsd
+	exit ;;
+    9000/8??:4.3bsd:*:*)
+	echo hppa1.0-hp-bsd
+	exit ;;
+    *9??*:MPE/iX:*:* | *3000*:MPE/iX:*:*)
+	echo hppa1.0-hp-mpeix
+	exit ;;
+    hp7??:OSF1:*:* | hp8?[79]:OSF1:*:*)
+	echo hppa1.1-hp-osf
+	exit ;;
+    hp8??:OSF1:*:*)
+	echo hppa1.0-hp-osf
+	exit ;;
+    i*86:OSF1:*:*)
+	if test -x /usr/sbin/sysversion ; then
+	    echo "$UNAME_MACHINE"-unknown-osf1mk
+	else
+	    echo "$UNAME_MACHINE"-unknown-osf1
+	fi
+	exit ;;
+    parisc*:Lites*:*:*)
+	echo hppa1.1-hp-lites
+	exit ;;
+    C1*:ConvexOS:*:* | convex:ConvexOS:C1*:*)
+	echo c1-convex-bsd
+	exit ;;
+    C2*:ConvexOS:*:* | convex:ConvexOS:C2*:*)
+	if getsysinfo -f scalar_acc
+	then echo c32-convex-bsd
+	else echo c2-convex-bsd
+	fi
+	exit ;;
+    C34*:ConvexOS:*:* | convex:ConvexOS:C34*:*)
+	echo c34-convex-bsd
+	exit ;;
+    C38*:ConvexOS:*:* | convex:ConvexOS:C38*:*)
+	echo c38-convex-bsd
+	exit ;;
+    C4*:ConvexOS:*:* | convex:ConvexOS:C4*:*)
+	echo c4-convex-bsd
+	exit ;;
+    CRAY*Y-MP:*:*:*)
+	echo ymp-cray-unicos"$UNAME_RELEASE" | sed -e 's/\.[^.]*$/.X/'
+	exit ;;
+    CRAY*[A-Z]90:*:*:*)
+	echo "$UNAME_MACHINE"-cray-unicos"$UNAME_RELEASE" \
+	| sed -e 's/CRAY.*\([A-Z]90\)/\1/' \
+	      -e y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/ \
+	      -e 's/\.[^.]*$/.X/'
+	exit ;;
+    CRAY*TS:*:*:*)
+	echo t90-cray-unicos"$UNAME_RELEASE" | sed -e 's/\.[^.]*$/.X/'
+	exit ;;
+    CRAY*T3E:*:*:*)
+	echo alphaev5-cray-unicosmk"$UNAME_RELEASE" | sed -e 's/\.[^.]*$/.X/'
+	exit ;;
+    CRAY*SV1:*:*:*)
+	echo sv1-cray-unicos"$UNAME_RELEASE" | sed -e 's/\.[^.]*$/.X/'
+	exit ;;
+    *:UNICOS/mp:*:*)
+	echo craynv-cray-unicosmp"$UNAME_RELEASE" | sed -e 's/\.[^.]*$/.X/'
+	exit ;;
+    F30[01]:UNIX_System_V:*:* | F700:UNIX_System_V:*:*)
+	FUJITSU_PROC=$(uname -m | tr ABCDEFGHIJKLMNOPQRSTUVWXYZ abcdefghijklmnopqrstuvwxyz)
+	FUJITSU_SYS=$(uname -p | tr ABCDEFGHIJKLMNOPQRSTUVWXYZ abcdefghijklmnopqrstuvwxyz | sed -e 's/\///')
+	FUJITSU_REL=$(echo "$UNAME_RELEASE" | sed -e 's/ /_/')
+	echo "${FUJITSU_PROC}-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}"
+	exit ;;
+    5000:UNIX_System_V:4.*:*)
+	FUJITSU_SYS=$(uname -p | tr ABCDEFGHIJKLMNOPQRSTUVWXYZ abcdefghijklmnopqrstuvwxyz | sed -e 's/\///')
+	FUJITSU_REL=$(echo "$UNAME_RELEASE" | tr ABCDEFGHIJKLMNOPQRSTUVWXYZ abcdefghijklmnopqrstuvwxyz | sed -e 's/ /_/')
+	echo "sparc-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}"
+	exit ;;
+    i*86:BSD/386:*:* | i*86:BSD/OS:*:* | *:Ascend\ Embedded/OS:*:*)
+	echo "$UNAME_MACHINE"-pc-bsdi"$UNAME_RELEASE"
+	exit ;;
+    sparc*:BSD/OS:*:*)
+	echo sparc-unknown-bsdi"$UNAME_RELEASE"
+	exit ;;
+    *:BSD/OS:*:*)
+	echo "$UNAME_MACHINE"-unknown-bsdi"$UNAME_RELEASE"
+	exit ;;
+    arm:FreeBSD:*:*)
+	UNAME_PROCESSOR=$(uname -p)
+	set_cc_for_build
+	if echo __ARM_PCS_VFP | $CC_FOR_BUILD -E - 2>/dev/null \
+	    | grep -q __ARM_PCS_VFP
+	then
+	    echo "${UNAME_PROCESSOR}"-unknown-freebsd"$(echo ${UNAME_RELEASE}|sed -e 's/[-(].*//')"-gnueabi
+	else
+	    echo "${UNAME_PROCESSOR}"-unknown-freebsd"$(echo ${UNAME_RELEASE}|sed -e 's/[-(].*//')"-gnueabihf
+	fi
+	exit ;;
+    *:FreeBSD:*:*)
+	UNAME_PROCESSOR=$(/usr/bin/uname -p)
+	case "$UNAME_PROCESSOR" in
+	    amd64)
+		UNAME_PROCESSOR=x86_64 ;;
+	    i386)
+		UNAME_PROCESSOR=i586 ;;
+	esac
+	echo "$UNAME_PROCESSOR"-unknown-freebsd"$(echo "$UNAME_RELEASE"|sed -e 's/[-(].*//')"
+	exit ;;
+    i*:CYGWIN*:*)
+	echo "$UNAME_MACHINE"-pc-cygwin
+	exit ;;
+    *:MINGW64*:*)
+	echo "$UNAME_MACHINE"-pc-mingw64
+	exit ;;
+    *:MINGW*:*)
+	echo "$UNAME_MACHINE"-pc-mingw32
+	exit ;;
+    *:MSYS*:*)
+	echo "$UNAME_MACHINE"-pc-msys
+	exit ;;
+    i*:PW*:*)
+	echo "$UNAME_MACHINE"-pc-pw32
+	exit ;;
+    *:Interix*:*)
+	case "$UNAME_MACHINE" in
+	    x86)
+		echo i586-pc-interix"$UNAME_RELEASE"
+		exit ;;
+	    authenticamd | genuineintel | EM64T)
+		echo x86_64-unknown-interix"$UNAME_RELEASE"
+		exit ;;
+	    IA64)
+		echo ia64-unknown-interix"$UNAME_RELEASE"
+		exit ;;
+	esac ;;
+    i*:UWIN*:*)
+	echo "$UNAME_MACHINE"-pc-uwin
+	exit ;;
+    amd64:CYGWIN*:*:* | x86_64:CYGWIN*:*:*)
+	echo x86_64-pc-cygwin
+	exit ;;
+    prep*:SunOS:5.*:*)
+	echo powerpcle-unknown-solaris2"$(echo "$UNAME_RELEASE"|sed -e 's/[^.]*//')"
+	exit ;;
+    *:GNU:*:*)
+	# the GNU system
+	echo "$(echo "$UNAME_MACHINE"|sed -e 's,[-/].*$,,')-unknown-$LIBC$(echo "$UNAME_RELEASE"|sed -e 's,/.*$,,')"
+	exit ;;
+    *:GNU/*:*:*)
+	# other systems with GNU libc and userland
+	echo "$UNAME_MACHINE-unknown-$(echo "$UNAME_SYSTEM" | sed 's,^[^/]*/,,' | tr "[:upper:]" "[:lower:]")$(echo "$UNAME_RELEASE"|sed -e 's/[-(].*//')-$LIBC"
+	exit ;;
+    *:Minix:*:*)
+	echo "$UNAME_MACHINE"-unknown-minix
+	exit ;;
+    aarch64:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    aarch64_be:Linux:*:*)
+	UNAME_MACHINE=aarch64_be
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    alpha:Linux:*:*)
+	case $(sed -n '/^cpu model/s/^.*: \(.*\)/\1/p' /proc/cpuinfo 2>/dev/null) in
+	  EV5)   UNAME_MACHINE=alphaev5 ;;
+	  EV56)  UNAME_MACHINE=alphaev56 ;;
+	  PCA56) UNAME_MACHINE=alphapca56 ;;
+	  PCA57) UNAME_MACHINE=alphapca56 ;;
+	  EV6)   UNAME_MACHINE=alphaev6 ;;
+	  EV67)  UNAME_MACHINE=alphaev67 ;;
+	  EV68*) UNAME_MACHINE=alphaev68 ;;
+	esac
+	objdump --private-headers /bin/sh | grep -q ld.so.1
+	if test "$?" = 0 ; then LIBC=gnulibc1 ; fi
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    arc:Linux:*:* | arceb:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    arm*:Linux:*:*)
+	set_cc_for_build
+	if echo __ARM_EABI__ | $CC_FOR_BUILD -E - 2>/dev/null \
+	    | grep -q __ARM_EABI__
+	then
+	    echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	else
+	    if echo __ARM_PCS_VFP | $CC_FOR_BUILD -E - 2>/dev/null \
+		| grep -q __ARM_PCS_VFP
+	    then
+		echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"eabi
+	    else
+		echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"eabihf
+	    fi
+	fi
+	exit ;;
+    avr32*:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    cris:Linux:*:*)
+	echo "$UNAME_MACHINE"-axis-linux-"$LIBC"
+	exit ;;
+    crisv32:Linux:*:*)
+	echo "$UNAME_MACHINE"-axis-linux-"$LIBC"
+	exit ;;
+    e2k:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    frv:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    hexagon:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    i*86:Linux:*:*)
+	echo "$UNAME_MACHINE"-pc-linux-"$LIBC"
+	exit ;;
+    ia64:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    k1om:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    loongarch32:Linux:*:* | loongarch64:Linux:*:* | loongarchx32:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    m32r*:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    m68*:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    mips:Linux:*:* | mips64:Linux:*:*)
+	set_cc_for_build
+	IS_GLIBC=0
+	test x"${LIBC}" = xgnu && IS_GLIBC=1
+	sed 's/^	//' << EOF > "$dummy.c"
+	#undef CPU
+	#undef mips
+	#undef mipsel
+	#undef mips64
+	#undef mips64el
+	#if ${IS_GLIBC} && defined(_ABI64)
+	LIBCABI=gnuabi64
+	#else
+	#if ${IS_GLIBC} && defined(_ABIN32)
+	LIBCABI=gnuabin32
+	#else
+	LIBCABI=${LIBC}
+	#endif
+	#endif
+
+	#if ${IS_GLIBC} && defined(__mips64) && defined(__mips_isa_rev) && __mips_isa_rev>=6
+	CPU=mipsisa64r6
+	#else
+	#if ${IS_GLIBC} && !defined(__mips64) && defined(__mips_isa_rev) && __mips_isa_rev>=6
+	CPU=mipsisa32r6
+	#else
+	#if defined(__mips64)
+	CPU=mips64
+	#else
+	CPU=mips
+	#endif
+	#endif
+	#endif
+
+	#if defined(__MIPSEL__) || defined(__MIPSEL) || defined(_MIPSEL) || defined(MIPSEL)
+	MIPS_ENDIAN=el
+	#else
+	#if defined(__MIPSEB__) || defined(__MIPSEB) || defined(_MIPSEB) || defined(MIPSEB)
+	MIPS_ENDIAN=
+	#else
+	MIPS_ENDIAN=
+	#endif
+	#endif
+EOF
+	eval "$($CC_FOR_BUILD -E "$dummy.c" 2>/dev/null | grep '^CPU\|^MIPS_ENDIAN\|^LIBCABI')"
+	test "x$CPU" != x && { echo "$CPU${MIPS_ENDIAN}-unknown-linux-$LIBCABI"; exit; }
+	;;
+    mips64el:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    openrisc*:Linux:*:*)
+	echo or1k-unknown-linux-"$LIBC"
+	exit ;;
+    or32:Linux:*:* | or1k*:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    padre:Linux:*:*)
+	echo sparc-unknown-linux-"$LIBC"
+	exit ;;
+    parisc64:Linux:*:* | hppa64:Linux:*:*)
+	echo hppa64-unknown-linux-"$LIBC"
+	exit ;;
+    parisc:Linux:*:* | hppa:Linux:*:*)
+	# Look for CPU level
+	case $(grep '^cpu[^a-z]*:' /proc/cpuinfo 2>/dev/null | cut -d' ' -f2) in
+	  PA7*) echo hppa1.1-unknown-linux-"$LIBC" ;;
+	  PA8*) echo hppa2.0-unknown-linux-"$LIBC" ;;
+	  *)    echo hppa-unknown-linux-"$LIBC" ;;
+	esac
+	exit ;;
+    ppc64:Linux:*:*)
+	echo powerpc64-unknown-linux-"$LIBC"
+	exit ;;
+    ppc:Linux:*:*)
+	echo powerpc-unknown-linux-"$LIBC"
+	exit ;;
+    ppc64le:Linux:*:*)
+	echo powerpc64le-unknown-linux-"$LIBC"
+	exit ;;
+    ppcle:Linux:*:*)
+	echo powerpcle-unknown-linux-"$LIBC"
+	exit ;;
+    riscv32:Linux:*:* | riscv32be:Linux:*:* | riscv64:Linux:*:* | riscv64be:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    s390:Linux:*:* | s390x:Linux:*:*)
+	echo "$UNAME_MACHINE"-ibm-linux-"$LIBC"
+	exit ;;
+    sh64*:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    sh*:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    sparc:Linux:*:* | sparc64:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    tile*:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    vax:Linux:*:*)
+	echo "$UNAME_MACHINE"-dec-linux-"$LIBC"
+	exit ;;
+    x86_64:Linux:*:*)
+	set_cc_for_build
+	LIBCABI=$LIBC
+	if test "$CC_FOR_BUILD" != no_compiler_found; then
+	    if (echo '#ifdef __ILP32__'; echo IS_X32; echo '#endif') | \
+		(CCOPTS="" $CC_FOR_BUILD -E - 2>/dev/null) | \
+		grep IS_X32 >/dev/null
+	    then
+		LIBCABI="$LIBC"x32
+	    fi
+	fi
+	echo "$UNAME_MACHINE"-pc-linux-"$LIBCABI"
+	exit ;;
+    xtensa*:Linux:*:*)
+	echo "$UNAME_MACHINE"-unknown-linux-"$LIBC"
+	exit ;;
+    i*86:DYNIX/ptx:4*:*)
+	# ptx 4.0 does uname -s correctly, with DYNIX/ptx in there.
+	# earlier versions are messed up and put the nodename in both
+	# sysname and nodename.
+	echo i386-sequent-sysv4
+	exit ;;
+    i*86:UNIX_SV:4.2MP:2.*)
+	# Unixware is an offshoot of SVR4, but it has its own version
+	# number series starting with 2...
+	# I am not positive that other SVR4 systems won't match this,
+	# I just have to hope.  -- rms.
+	# Use sysv4.2uw... so that sysv4* matches it.
+	echo "$UNAME_MACHINE"-pc-sysv4.2uw"$UNAME_VERSION"
+	exit ;;
+    i*86:OS/2:*:*)
+	# If we were able to find `uname', then EMX Unix compatibility
+	# is probably installed.
+	echo "$UNAME_MACHINE"-pc-os2-emx
+	exit ;;
+    i*86:XTS-300:*:STOP)
+	echo "$UNAME_MACHINE"-unknown-stop
+	exit ;;
+    i*86:atheos:*:*)
+	echo "$UNAME_MACHINE"-unknown-atheos
+	exit ;;
+    i*86:syllable:*:*)
+	echo "$UNAME_MACHINE"-pc-syllable
+	exit ;;
+    i*86:LynxOS:2.*:* | i*86:LynxOS:3.[01]*:* | i*86:LynxOS:4.[02]*:*)
+	echo i386-unknown-lynxos"$UNAME_RELEASE"
+	exit ;;
+    i*86:*DOS:*:*)
+	echo "$UNAME_MACHINE"-pc-msdosdjgpp
+	exit ;;
+    i*86:*:4.*:*)
+	UNAME_REL=$(echo "$UNAME_RELEASE" | sed 's/\/MP$//')
+	if grep Novell /usr/include/link.h >/dev/null 2>/dev/null; then
+		echo "$UNAME_MACHINE"-univel-sysv"$UNAME_REL"
+	else
+		echo "$UNAME_MACHINE"-pc-sysv"$UNAME_REL"
+	fi
+	exit ;;
+    i*86:*:5:[678]*)
+	# UnixWare 7.x, OpenUNIX and OpenServer 6.
+	case $(/bin/uname -X | grep "^Machine") in
+	    *486*)	     UNAME_MACHINE=i486 ;;
+	    *Pentium)	     UNAME_MACHINE=i586 ;;
+	    *Pent*|*Celeron) UNAME_MACHINE=i686 ;;
+	esac
+	echo "$UNAME_MACHINE-unknown-sysv${UNAME_RELEASE}${UNAME_SYSTEM}${UNAME_VERSION}"
+	exit ;;
+    i*86:*:3.2:*)
+	if test -f /usr/options/cb.name; then
+		UNAME_REL=$(sed -n 's/.*Version //p' </usr/options/cb.name)
+		echo "$UNAME_MACHINE"-pc-isc"$UNAME_REL"
+	elif /bin/uname -X 2>/dev/null >/dev/null ; then
+		UNAME_REL=$( (/bin/uname -X|grep Release|sed -e 's/.*= //'))
+		(/bin/uname -X|grep i80486 >/dev/null) && UNAME_MACHINE=i486
+		(/bin/uname -X|grep '^Machine.*Pentium' >/dev/null) \
+			&& UNAME_MACHINE=i586
+		(/bin/uname -X|grep '^Machine.*Pent *II' >/dev/null) \
+			&& UNAME_MACHINE=i686
+		(/bin/uname -X|grep '^Machine.*Pentium Pro' >/dev/null) \
+			&& UNAME_MACHINE=i686
+		echo "$UNAME_MACHINE"-pc-sco"$UNAME_REL"
+	else
+		echo "$UNAME_MACHINE"-pc-sysv32
+	fi
+	exit ;;
+    pc:*:*:*)
+	# Left here for compatibility:
+	# uname -m prints for DJGPP always 'pc', but it prints nothing about
+	# the processor, so we play safe by assuming i586.
+	# Note: whatever this is, it MUST be the same as what config.sub
+	# prints for the "djgpp" host, or else GDB configure will decide that
+	# this is a cross-build.
+	echo i586-pc-msdosdjgpp
+	exit ;;
+    Intel:Mach:3*:*)
+	echo i386-pc-mach3
+	exit ;;
+    paragon:*:*:*)
+	echo i860-intel-osf1
+	exit ;;
+    i860:*:4.*:*) # i860-SVR4
+	if grep Stardent /usr/include/sys/uadmin.h >/dev/null 2>&1 ; then
+	  echo i860-stardent-sysv"$UNAME_RELEASE" # Stardent Vistra i860-SVR4
+	else # Add other i860-SVR4 vendors below as they are discovered.
+	  echo i860-unknown-sysv"$UNAME_RELEASE"  # Unknown i860-SVR4
+	fi
+	exit ;;
+    mini*:CTIX:SYS*5:*)
+	# "miniframe"
+	echo m68010-convergent-sysv
+	exit ;;
+    mc68k:UNIX:SYSTEM5:3.51m)
+	echo m68k-convergent-sysv
+	exit ;;
+    M680?0:D-NIX:5.3:*)
+	echo m68k-diab-dnix
+	exit ;;
+    M68*:*:R3V[5678]*:*)
+	test -r /sysV68 && { echo 'm68k-motorola-sysv'; exit; } ;;
+    3[345]??:*:4.0:3.0 | 3[34]??A:*:4.0:3.0 | 3[34]??,*:*:4.0:3.0 | 3[34]??/*:*:4.0:3.0 | 4400:*:4.0:3.0 | 4850:*:4.0:3.0 | SKA40:*:4.0:3.0 | SDS2:*:4.0:3.0 | SHG2:*:4.0:3.0 | S7501*:*:4.0:3.0)
+	OS_REL=''
+	test -r /etc/.relid \
+	&& OS_REL=.$(sed -n 's/[^ ]* [^ ]* \([0-9][0-9]\).*/\1/p' < /etc/.relid)
+	/bin/uname -p 2>/dev/null | grep 86 >/dev/null \
+	  && { echo i486-ncr-sysv4.3"$OS_REL"; exit; }
+	/bin/uname -p 2>/dev/null | /bin/grep entium >/dev/null \
+	  && { echo i586-ncr-sysv4.3"$OS_REL"; exit; } ;;
+    3[34]??:*:4.0:* | 3[34]??,*:*:4.0:*)
+	/bin/uname -p 2>/dev/null | grep 86 >/dev/null \
+	  && { echo i486-ncr-sysv4; exit; } ;;
+    NCR*:*:4.2:* | MPRAS*:*:4.2:*)
+	OS_REL='.3'
+	test -r /etc/.relid \
+	    && OS_REL=.$(sed -n 's/[^ ]* [^ ]* \([0-9][0-9]\).*/\1/p' < /etc/.relid)
+	/bin/uname -p 2>/dev/null | grep 86 >/dev/null \
+	    && { echo i486-ncr-sysv4.3"$OS_REL"; exit; }
+	/bin/uname -p 2>/dev/null | /bin/grep entium >/dev/null \
+	    && { echo i586-ncr-sysv4.3"$OS_REL"; exit; }
+	/bin/uname -p 2>/dev/null | /bin/grep pteron >/dev/null \
+	    && { echo i586-ncr-sysv4.3"$OS_REL"; exit; } ;;
+    m68*:LynxOS:2.*:* | m68*:LynxOS:3.0*:*)
+	echo m68k-unknown-lynxos"$UNAME_RELEASE"
+	exit ;;
+    mc68030:UNIX_System_V:4.*:*)
+	echo m68k-atari-sysv4
+	exit ;;
+    TSUNAMI:LynxOS:2.*:*)
+	echo sparc-unknown-lynxos"$UNAME_RELEASE"
+	exit ;;
+    rs6000:LynxOS:2.*:*)
+	echo rs6000-unknown-lynxos"$UNAME_RELEASE"
+	exit ;;
+    PowerPC:LynxOS:2.*:* | PowerPC:LynxOS:3.[01]*:* | PowerPC:LynxOS:4.[02]*:*)
+	echo powerpc-unknown-lynxos"$UNAME_RELEASE"
+	exit ;;
+    SM[BE]S:UNIX_SV:*:*)
+	echo mips-dde-sysv"$UNAME_RELEASE"
+	exit ;;
+    RM*:ReliantUNIX-*:*:*)
+	echo mips-sni-sysv4
+	exit ;;
+    RM*:SINIX-*:*:*)
+	echo mips-sni-sysv4
+	exit ;;
+    *:SINIX-*:*:*)
+	if uname -p 2>/dev/null >/dev/null ; then
+		UNAME_MACHINE=$( (uname -p) 2>/dev/null)
+		echo "$UNAME_MACHINE"-sni-sysv4
+	else
+		echo ns32k-sni-sysv
+	fi
+	exit ;;
+    PENTIUM:*:4.0*:*)	# Unisys `ClearPath HMP IX 4000' SVR4/MP effort
+			# says <Richard.M.Bartel@ccMail.Census.GOV>
+	echo i586-unisys-sysv4
+	exit ;;
+    *:UNIX_System_V:4*:FTX*)
+	# From Gerald Hewes <hewes@openmarket.com>.
+	# How about differentiating between stratus architectures? -djm
+	echo hppa1.1-stratus-sysv4
+	exit ;;
+    *:*:*:FTX*)
+	# From seanf@swdc.stratus.com.
+	echo i860-stratus-sysv4
+	exit ;;
+    i*86:VOS:*:*)
+	# From Paul.Green@stratus.com.
+	echo "$UNAME_MACHINE"-stratus-vos
+	exit ;;
+    *:VOS:*:*)
+	# From Paul.Green@stratus.com.
+	echo hppa1.1-stratus-vos
+	exit ;;
+    mc68*:A/UX:*:*)
+	echo m68k-apple-aux"$UNAME_RELEASE"
+	exit ;;
+    news*:NEWS-OS:6*:*)
+	echo mips-sony-newsos6
+	exit ;;
+    R[34]000:*System_V*:*:* | R4000:UNIX_SYSV:*:* | R*000:UNIX_SV:*:*)
+	if test -d /usr/nec; then
+		echo mips-nec-sysv"$UNAME_RELEASE"
+	else
+		echo mips-unknown-sysv"$UNAME_RELEASE"
+	fi
+	exit ;;
+    BeBox:BeOS:*:*)	# BeOS running on hardware made by Be, PPC only.
+	echo powerpc-be-beos
+	exit ;;
+    BeMac:BeOS:*:*)	# BeOS running on Mac or Mac clone, PPC only.
+	echo powerpc-apple-beos
+	exit ;;
+    BePC:BeOS:*:*)	# BeOS running on Intel PC compatible.
+	echo i586-pc-beos
+	exit ;;
+    BePC:Haiku:*:*)	# Haiku running on Intel PC compatible.
+	echo i586-pc-haiku
+	exit ;;
+    x86_64:Haiku:*:*)
+	echo x86_64-unknown-haiku
+	exit ;;
+    SX-4:SUPER-UX:*:*)
+	echo sx4-nec-superux"$UNAME_RELEASE"
+	exit ;;
+    SX-5:SUPER-UX:*:*)
+	echo sx5-nec-superux"$UNAME_RELEASE"
+	exit ;;
+    SX-6:SUPER-UX:*:*)
+	echo sx6-nec-superux"$UNAME_RELEASE"
+	exit ;;
+    SX-7:SUPER-UX:*:*)
+	echo sx7-nec-superux"$UNAME_RELEASE"
+	exit ;;
+    SX-8:SUPER-UX:*:*)
+	echo sx8-nec-superux"$UNAME_RELEASE"
+	exit ;;
+    SX-8R:SUPER-UX:*:*)
+	echo sx8r-nec-superux"$UNAME_RELEASE"
+	exit ;;
+    SX-ACE:SUPER-UX:*:*)
+	echo sxace-nec-superux"$UNAME_RELEASE"
+	exit ;;
+    Power*:Rhapsody:*:*)
+	echo powerpc-apple-rhapsody"$UNAME_RELEASE"
+	exit ;;
+    *:Rhapsody:*:*)
+	echo "$UNAME_MACHINE"-apple-rhapsody"$UNAME_RELEASE"
+	exit ;;
+    arm64:Darwin:*:*)
+	echo aarch64-apple-darwin"$UNAME_RELEASE"
+	exit ;;
+    *:Darwin:*:*)
+	UNAME_PROCESSOR=$(uname -p)
+	case $UNAME_PROCESSOR in
+	    unknown) UNAME_PROCESSOR=powerpc ;;
+	esac
+	if command -v xcode-select > /dev/null 2> /dev/null && \
+		! xcode-select --print-path > /dev/null 2> /dev/null ; then
+	    # Avoid executing cc if there is no toolchain installed as
+	    # cc will be a stub that puts up a graphical alert
+	    # prompting the user to install developer tools.
+	    CC_FOR_BUILD=no_compiler_found
+	else
+	    set_cc_for_build
+	fi
+	if test "$CC_FOR_BUILD" != no_compiler_found; then
+	    if (echo '#ifdef __LP64__'; echo IS_64BIT_ARCH; echo '#endif') | \
+		   (CCOPTS="" $CC_FOR_BUILD -E - 2>/dev/null) | \
+		   grep IS_64BIT_ARCH >/dev/null
+	    then
+		case $UNAME_PROCESSOR in
+		    i386) UNAME_PROCESSOR=x86_64 ;;
+		    powerpc) UNAME_PROCESSOR=powerpc64 ;;
+		esac
+	    fi
+	    # On 10.4-10.6 one might compile for PowerPC via gcc -arch ppc
+	    if (echo '#ifdef __POWERPC__'; echo IS_PPC; echo '#endif') | \
+		   (CCOPTS="" $CC_FOR_BUILD -E - 2>/dev/null) | \
+		   grep IS_PPC >/dev/null
+	    then
+		UNAME_PROCESSOR=powerpc
+	    fi
+	elif test "$UNAME_PROCESSOR" = i386 ; then
+	    # uname -m returns i386 or x86_64
+	    UNAME_PROCESSOR=$UNAME_MACHINE
+	fi
+	echo "$UNAME_PROCESSOR"-apple-darwin"$UNAME_RELEASE"
+	exit ;;
+    *:procnto*:*:* | *:QNX:[0123456789]*:*)
+	UNAME_PROCESSOR=$(uname -p)
+	if test "$UNAME_PROCESSOR" = x86; then
+		UNAME_PROCESSOR=i386
+		UNAME_MACHINE=pc
+	fi
+	echo "$UNAME_PROCESSOR"-"$UNAME_MACHINE"-nto-qnx"$UNAME_RELEASE"
+	exit ;;
+    *:QNX:*:4*)
+	echo i386-pc-qnx
+	exit ;;
+    NEO-*:NONSTOP_KERNEL:*:*)
+	echo neo-tandem-nsk"$UNAME_RELEASE"
+	exit ;;
+    NSE-*:NONSTOP_KERNEL:*:*)
+	echo nse-tandem-nsk"$UNAME_RELEASE"
+	exit ;;
+    NSR-*:NONSTOP_KERNEL:*:*)
+	echo nsr-tandem-nsk"$UNAME_RELEASE"
+	exit ;;
+    NSV-*:NONSTOP_KERNEL:*:*)
+	echo nsv-tandem-nsk"$UNAME_RELEASE"
+	exit ;;
+    NSX-*:NONSTOP_KERNEL:*:*)
+	echo nsx-tandem-nsk"$UNAME_RELEASE"
+	exit ;;
+    *:NonStop-UX:*:*)
+	echo mips-compaq-nonstopux
+	exit ;;
+    BS2000:POSIX*:*:*)
+	echo bs2000-siemens-sysv
+	exit ;;
+    DS/*:UNIX_System_V:*:*)
+	echo "$UNAME_MACHINE"-"$UNAME_SYSTEM"-"$UNAME_RELEASE"
+	exit ;;
+    *:Plan9:*:*)
+	# "uname -m" is not consistent, so use $cputype instead. 386
+	# is converted to i386 for consistency with other x86
+	# operating systems.
+	# shellcheck disable=SC2154
+	if test "$cputype" = 386; then
+	    UNAME_MACHINE=i386
+	else
+	    UNAME_MACHINE="$cputype"
+	fi
+	echo "$UNAME_MACHINE"-unknown-plan9
+	exit ;;
+    *:TOPS-10:*:*)
+	echo pdp10-unknown-tops10
+	exit ;;
+    *:TENEX:*:*)
+	echo pdp10-unknown-tenex
+	exit ;;
+    KS10:TOPS-20:*:* | KL10:TOPS-20:*:* | TYPE4:TOPS-20:*:*)
+	echo pdp10-dec-tops20
+	exit ;;
+    XKL-1:TOPS-20:*:* | TYPE5:TOPS-20:*:*)
+	echo pdp10-xkl-tops20
+	exit ;;
+    *:TOPS-20:*:*)
+	echo pdp10-unknown-tops20
+	exit ;;
+    *:ITS:*:*)
+	echo pdp10-unknown-its
+	exit ;;
+    SEI:*:*:SEIUX)
+	echo mips-sei-seiux"$UNAME_RELEASE"
+	exit ;;
+    *:DragonFly:*:*)
+	echo "$UNAME_MACHINE"-unknown-dragonfly"$(echo "$UNAME_RELEASE"|sed -e 's/[-(].*//')"
+	exit ;;
+    *:*VMS:*:*)
+	UNAME_MACHINE=$( (uname -p) 2>/dev/null)
+	case "$UNAME_MACHINE" in
+	    A*) echo alpha-dec-vms ; exit ;;
+	    I*) echo ia64-dec-vms ; exit ;;
+	    V*) echo vax-dec-vms ; exit ;;
+	esac ;;
+    *:XENIX:*:SysV)
+	echo i386-pc-xenix
+	exit ;;
+    i*86:skyos:*:*)
+	echo "$UNAME_MACHINE"-pc-skyos"$(echo "$UNAME_RELEASE" | sed -e 's/ .*$//')"
+	exit ;;
+    i*86:rdos:*:*)
+	echo "$UNAME_MACHINE"-pc-rdos
+	exit ;;
+    *:AROS:*:*)
+	echo "$UNAME_MACHINE"-unknown-aros
+	exit ;;
+    x86_64:VMkernel:*:*)
+	echo "$UNAME_MACHINE"-unknown-esx
+	exit ;;
+    amd64:Isilon\ OneFS:*:*)
+	echo x86_64-unknown-onefs
+	exit ;;
+    *:Unleashed:*:*)
+	echo "$UNAME_MACHINE"-unknown-unleashed"$UNAME_RELEASE"
+	exit ;;
+esac
+
+# No uname command or uname output not recognized.
+set_cc_for_build
+cat > "$dummy.c" <<EOF
+#ifdef _SEQUENT_
+#include <sys/types.h>
+#include <sys/utsname.h>
+#endif
+#if defined(ultrix) || defined(_ultrix) || defined(__ultrix) || defined(__ultrix__)
+#if defined (vax) || defined (__vax) || defined (__vax__) || defined(mips) || defined(__mips) || defined(__mips__) || defined(MIPS) || defined(__MIPS__)
+#include <signal.h>
+#if defined(_SIZE_T_) || defined(SIGLOST)
+#include <sys/utsname.h>
+#endif
+#endif
+#endif
+main ()
+{
+#if defined (sony)
+#if defined (MIPSEB)
+  /* BFD wants "bsd" instead of "newsos".  Perhaps BFD should be changed,
+     I don't know....  */
+  printf ("mips-sony-bsd\n"); exit (0);
+#else
+#include <sys/param.h>
+  printf ("m68k-sony-newsos%s\n",
+#ifdef NEWSOS4
+  "4"
+#else
+  ""
+#endif
+  ); exit (0);
+#endif
+#endif
+
+#if defined (NeXT)
+#if !defined (__ARCHITECTURE__)
+#define __ARCHITECTURE__ "m68k"
+#endif
+  int version;
+  version=$( (hostinfo | sed -n 's/.*NeXT Mach \([0-9]*\).*/\1/p') 2>/dev/null);
+  if (version < 4)
+    printf ("%s-next-nextstep%d\n", __ARCHITECTURE__, version);
+  else
+    printf ("%s-next-openstep%d\n", __ARCHITECTURE__, version);
+  exit (0);
+#endif
+
+#if defined (MULTIMAX) || defined (n16)
+#if defined (UMAXV)
+  printf ("ns32k-encore-sysv\n"); exit (0);
+#else
+#if defined (CMU)
+  printf ("ns32k-encore-mach\n"); exit (0);
+#else
+  printf ("ns32k-encore-bsd\n"); exit (0);
+#endif
+#endif
+#endif
+
+#if defined (__386BSD__)
+  printf ("i386-pc-bsd\n"); exit (0);
+#endif
+
+#if defined (sequent)
+#if defined (i386)
+  printf ("i386-sequent-dynix\n"); exit (0);
+#endif
+#if defined (ns32000)
+  printf ("ns32k-sequent-dynix\n"); exit (0);
+#endif
+#endif
+
+#if defined (_SEQUENT_)
+  struct utsname un;
+
+  uname(&un);
+  if (strncmp(un.version, "V2", 2) == 0) {
+    printf ("i386-sequent-ptx2\n"); exit (0);
+  }
+  if (strncmp(un.version, "V1", 2) == 0) { /* XXX is V1 correct? */
+    printf ("i386-sequent-ptx1\n"); exit (0);
+  }
+  printf ("i386-sequent-ptx\n"); exit (0);
+#endif
+
+#if defined (vax)
+#if !defined (ultrix)
+#include <sys/param.h>
+#if defined (BSD)
+#if BSD == 43
+  printf ("vax-dec-bsd4.3\n"); exit (0);
+#else
+#if BSD == 199006
+  printf ("vax-dec-bsd4.3reno\n"); exit (0);
+#else
+  printf ("vax-dec-bsd\n"); exit (0);
+#endif
+#endif
+#else
+  printf ("vax-dec-bsd\n"); exit (0);
+#endif
+#else
+#if defined(_SIZE_T_) || defined(SIGLOST)
+  struct utsname un;
+  uname (&un);
+  printf ("vax-dec-ultrix%s\n", un.release); exit (0);
+#else
+  printf ("vax-dec-ultrix\n"); exit (0);
+#endif
+#endif
+#endif
+#if defined(ultrix) || defined(_ultrix) || defined(__ultrix) || defined(__ultrix__)
+#if defined(mips) || defined(__mips) || defined(__mips__) || defined(MIPS) || defined(__MIPS__)
+#if defined(_SIZE_T_) || defined(SIGLOST)
+  struct utsname *un;
+  uname (&un);
+  printf ("mips-dec-ultrix%s\n", un.release); exit (0);
+#else
+  printf ("mips-dec-ultrix\n"); exit (0);
+#endif
+#endif
+#endif
+
+#if defined (alliant) && defined (i860)
+  printf ("i860-alliant-bsd\n"); exit (0);
+#endif
+
+  exit (1);
+}
+EOF
+
+$CC_FOR_BUILD -o "$dummy" "$dummy.c" 2>/dev/null && SYSTEM_NAME=$($dummy) &&
+	{ echo "$SYSTEM_NAME"; exit; }
+
+# Apollos put the system type in the environment.
+test -d /usr/apollo && { echo "$ISP-apollo-$SYSTYPE"; exit; }
+
+echo "$0: unable to guess system type" >&2
+
+case "$UNAME_MACHINE:$UNAME_SYSTEM" in
+    mips:Linux | mips64:Linux)
+	# If we got here on MIPS GNU/Linux, output extra information.
+	cat >&2 <<EOF
+
+NOTE: MIPS GNU/Linux systems require a C compiler to fully recognize
+the system type. Please install a C compiler and try again.
+EOF
+	;;
+esac
+
+cat >&2 <<EOF
+
+This script (version $timestamp), has failed to recognize the
+operating system you are using. If your script is old, overwrite *all*
+copies of config.guess and config.sub with the latest versions from:
+
+  https://git.savannah.gnu.org/cgit/config.git/plain/config.guess
+and
+  https://git.savannah.gnu.org/cgit/config.git/plain/config.sub
+EOF
+
+year=$(echo $timestamp | sed 's,-.*,,')
+# shellcheck disable=SC2003
+if test "$(expr "$(date +%Y)" - "$year")" -lt 3 ; then
+   cat >&2 <<EOF
+
+If $0 has already been updated, send the following data and any
+information you think might be pertinent to config-patches@gnu.org to
+provide the necessary information to handle your system.
+
+config.guess timestamp = $timestamp
+
+uname -m = $( (uname -m) 2>/dev/null || echo unknown)
+uname -r = $( (uname -r) 2>/dev/null || echo unknown)
+uname -s = $( (uname -s) 2>/dev/null || echo unknown)
+uname -v = $( (uname -v) 2>/dev/null || echo unknown)
+
+/usr/bin/uname -p = $( (/usr/bin/uname -p) 2>/dev/null)
+/bin/uname -X     = $( (/bin/uname -X) 2>/dev/null)
+
+hostinfo               = $( (hostinfo) 2>/dev/null)
+/bin/universe          = $( (/bin/universe) 2>/dev/null)
+/usr/bin/arch -k       = $( (/usr/bin/arch -k) 2>/dev/null)
+/bin/arch              = $( (/bin/arch) 2>/dev/null)
+/usr/bin/oslevel       = $( (/usr/bin/oslevel) 2>/dev/null)
+/usr/convex/getsysinfo = $( (/usr/convex/getsysinfo) 2>/dev/null)
+
+UNAME_MACHINE = "$UNAME_MACHINE"
+UNAME_RELEASE = "$UNAME_RELEASE"
+UNAME_SYSTEM  = "$UNAME_SYSTEM"
+UNAME_VERSION = "$UNAME_VERSION"
+EOF
+fi
+
+exit 1
+
+# Local variables:
+# eval: (add-hook 'before-save-hook 'time-stamp)
+# time-stamp-start: "timestamp='"
+# time-stamp-format: "%:y-%02m-%02d"
+# time-stamp-end: "'"
+# End:
diff --git a/recipes/libgtextutils/config.sub b/recipes/libgtextutils/config.sub
new file mode 100644
index 0000000000000..38f3d037a785f
--- /dev/null
+++ b/recipes/libgtextutils/config.sub
@@ -0,0 +1,1885 @@
+#! /bin/sh
+# Configuration validation subroutine script.
+#   Copyright 1992-2021 Free Software Foundation, Inc.
+
+# shellcheck disable=SC2006,SC2268 # see below for rationale
+
+timestamp='2021-10-27'
+
+# This file is free software; you can redistribute it and/or modify it
+# under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+# General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, see <https://www.gnu.org/licenses/>.
+#
+# As a special exception to the GNU General Public License, if you
+# distribute this file as part of a program that contains a
+# configuration script generated by Autoconf, you may include it under
+# the same distribution terms that you use for the rest of that
+# program.  This Exception is an additional permission under section 7
+# of the GNU General Public License, version 3 ("GPLv3").
+
+
+# Please send patches to <config-patches@gnu.org>.
+#
+# Configuration subroutine to validate and canonicalize a configuration type.
+# Supply the specified configuration type as an argument.
+# If it is invalid, we print an error message on stderr and exit with code 1.
+# Otherwise, we print the canonical config type on stdout and succeed.
+
+# You can get the latest version of this script from:
+# https://git.savannah.gnu.org/cgit/config.git/plain/config.sub
+
+# This file is supposed to be the same for all GNU packages
+# and recognize all the CPU types, system types and aliases
+# that are meaningful with *any* GNU software.
+# Each package is responsible for reporting which valid configurations
+# it does not support.  The user should be able to distinguish
+# a failure to support a valid configuration from a meaningless
+# configuration.
+
+# The goal of this file is to map all the various variations of a given
+# machine specification into a single specification in the form:
+#	CPU_TYPE-MANUFACTURER-OPERATING_SYSTEM
+# or in some cases, the newer four-part form:
+#	CPU_TYPE-MANUFACTURER-KERNEL-OPERATING_SYSTEM
+# It is wrong to echo any other type of specification.
+
+# The "shellcheck disable" line above the timestamp inhibits complaints
+# about features and limitations of the classic Bourne shell that were
+# superseded or lifted in POSIX.  However, this script identifies a wide
+# variety of pre-POSIX systems that do not have POSIX shells at all, and
+# even some reasonably current systems (Solaris 10 as case-in-point) still
+# have a pre-POSIX /bin/sh.
+
+me=`echo "$0" | sed -e 's,.*/,,'`
+
+usage="\
+Usage: $0 [OPTION] CPU-MFR-OPSYS or ALIAS
+
+Canonicalize a configuration name.
+
+Options:
+  -h, --help         print this help, then exit
+  -t, --time-stamp   print date of last modification, then exit
+  -v, --version      print version number, then exit
+
+Report bugs and patches to <config-patches@gnu.org>."
+
+version="\
+GNU config.sub ($timestamp)
+
+Copyright 1992-2021 Free Software Foundation, Inc.
+
+This is free software; see the source for copying conditions.  There is NO
+warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE."
+
+help="
+Try \`$me --help' for more information."
+
+# Parse command line
+while test $# -gt 0 ; do
+  case $1 in
+    --time-stamp | --time* | -t )
+       echo "$timestamp" ; exit ;;
+    --version | -v )
+       echo "$version" ; exit ;;
+    --help | --h* | -h )
+       echo "$usage"; exit ;;
+    -- )     # Stop option processing
+       shift; break ;;
+    - )	# Use stdin as input.
+       break ;;
+    -* )
+       echo "$me: invalid option $1$help" >&2
+       exit 1 ;;
+
+    *local*)
+       # First pass through any local machine types.
+       echo "$1"
+       exit ;;
+
+    * )
+       break ;;
+  esac
+done
+
+case $# in
+ 0) echo "$me: missing argument$help" >&2
+    exit 1;;
+ 1) ;;
+ *) echo "$me: too many arguments$help" >&2
+    exit 1;;
+esac
+
+# Split fields of configuration type
+# shellcheck disable=SC2162
+saved_IFS=$IFS
+IFS="-" read field1 field2 field3 field4 <<EOF
+$1
+EOF
+IFS=$saved_IFS
+
+# Separate into logical components for further validation
+case $1 in
+	*-*-*-*-*)
+		echo Invalid configuration \`"$1"\': more than four components >&2
+		exit 1
+		;;
+	*-*-*-*)
+		basic_machine=$field1-$field2
+		basic_os=$field3-$field4
+		;;
+	*-*-*)
+		# Ambiguous whether COMPANY is present, or skipped and KERNEL-OS is two
+		# parts
+		maybe_os=$field2-$field3
+		case $maybe_os in
+			nto-qnx* | linux-* | uclinux-uclibc* \
+			| uclinux-gnu* | kfreebsd*-gnu* | knetbsd*-gnu* | netbsd*-gnu* \
+			| netbsd*-eabi* | kopensolaris*-gnu* | cloudabi*-eabi* \
+			| storm-chaos* | os2-emx* | rtmk-nova*)
+				basic_machine=$field1
+				basic_os=$maybe_os
+				;;
+			android-linux)
+				basic_machine=$field1-unknown
+				basic_os=linux-android
+				;;
+			*)
+				basic_machine=$field1-$field2
+				basic_os=$field3
+				;;
+		esac
+		;;
+	*-*)
+		# A lone config we happen to match not fitting any pattern
+		case $field1-$field2 in
+			decstation-3100)
+				basic_machine=mips-dec
+				basic_os=
+				;;
+			*-*)
+				# Second component is usually, but not always the OS
+				case $field2 in
+					# Prevent following clause from handling this valid os
+					sun*os*)
+						basic_machine=$field1
+						basic_os=$field2
+						;;
+					zephyr*)
+						basic_machine=$field1-unknown
+						basic_os=$field2
+						;;
+					# Manufacturers
+					dec* | mips* | sequent* | encore* | pc533* | sgi* | sony* \
+					| att* | 7300* | 3300* | delta* | motorola* | sun[234]* \
+					| unicom* | ibm* | next | hp | isi* | apollo | altos* \
+					| convergent* | ncr* | news | 32* | 3600* | 3100* \
+					| hitachi* | c[123]* | convex* | sun | crds | omron* | dg \
+					| ultra | tti* | harris | dolphin | highlevel | gould \
+					| cbm | ns | masscomp | apple | axis | knuth | cray \
+					| microblaze* | sim | cisco \
+					| oki | wec | wrs | winbond)
+						basic_machine=$field1-$field2
+						basic_os=
+						;;
+					*)
+						basic_machine=$field1
+						basic_os=$field2
+						;;
+				esac
+			;;
+		esac
+		;;
+	*)
+		# Convert single-component short-hands not valid as part of
+		# multi-component configurations.
+		case $field1 in
+			386bsd)
+				basic_machine=i386-pc
+				basic_os=bsd
+				;;
+			a29khif)
+				basic_machine=a29k-amd
+				basic_os=udi
+				;;
+			adobe68k)
+				basic_machine=m68010-adobe
+				basic_os=scout
+				;;
+			alliant)
+				basic_machine=fx80-alliant
+				basic_os=
+				;;
+			altos | altos3068)
+				basic_machine=m68k-altos
+				basic_os=
+				;;
+			am29k)
+				basic_machine=a29k-none
+				basic_os=bsd
+				;;
+			amdahl)
+				basic_machine=580-amdahl
+				basic_os=sysv
+				;;
+			amiga)
+				basic_machine=m68k-unknown
+				basic_os=
+				;;
+			amigaos | amigados)
+				basic_machine=m68k-unknown
+				basic_os=amigaos
+				;;
+			amigaunix | amix)
+				basic_machine=m68k-unknown
+				basic_os=sysv4
+				;;
+			apollo68)
+				basic_machine=m68k-apollo
+				basic_os=sysv
+				;;
+			apollo68bsd)
+				basic_machine=m68k-apollo
+				basic_os=bsd
+				;;
+			aros)
+				basic_machine=i386-pc
+				basic_os=aros
+				;;
+			aux)
+				basic_machine=m68k-apple
+				basic_os=aux
+				;;
+			balance)
+				basic_machine=ns32k-sequent
+				basic_os=dynix
+				;;
+			blackfin)
+				basic_machine=bfin-unknown
+				basic_os=linux
+				;;
+			cegcc)
+				basic_machine=arm-unknown
+				basic_os=cegcc
+				;;
+			convex-c1)
+				basic_machine=c1-convex
+				basic_os=bsd
+				;;
+			convex-c2)
+				basic_machine=c2-convex
+				basic_os=bsd
+				;;
+			convex-c32)
+				basic_machine=c32-convex
+				basic_os=bsd
+				;;
+			convex-c34)
+				basic_machine=c34-convex
+				basic_os=bsd
+				;;
+			convex-c38)
+				basic_machine=c38-convex
+				basic_os=bsd
+				;;
+			cray)
+				basic_machine=j90-cray
+				basic_os=unicos
+				;;
+			crds | unos)
+				basic_machine=m68k-crds
+				basic_os=
+				;;
+			da30)
+				basic_machine=m68k-da30
+				basic_os=
+				;;
+			decstation | pmax | pmin | dec3100 | decstatn)
+				basic_machine=mips-dec
+				basic_os=
+				;;
+			delta88)
+				basic_machine=m88k-motorola
+				basic_os=sysv3
+				;;
+			dicos)
+				basic_machine=i686-pc
+				basic_os=dicos
+				;;
+			djgpp)
+				basic_machine=i586-pc
+				basic_os=msdosdjgpp
+				;;
+			ebmon29k)
+				basic_machine=a29k-amd
+				basic_os=ebmon
+				;;
+			es1800 | OSE68k | ose68k | ose | OSE)
+				basic_machine=m68k-ericsson
+				basic_os=ose
+				;;
+			gmicro)
+				basic_machine=tron-gmicro
+				basic_os=sysv
+				;;
+			go32)
+				basic_machine=i386-pc
+				basic_os=go32
+				;;
+			h8300hms)
+				basic_machine=h8300-hitachi
+				basic_os=hms
+				;;
+			h8300xray)
+				basic_machine=h8300-hitachi
+				basic_os=xray
+				;;
+			h8500hms)
+				basic_machine=h8500-hitachi
+				basic_os=hms
+				;;
+			harris)
+				basic_machine=m88k-harris
+				basic_os=sysv3
+				;;
+			hp300 | hp300hpux)
+				basic_machine=m68k-hp
+				basic_os=hpux
+				;;
+			hp300bsd)
+				basic_machine=m68k-hp
+				basic_os=bsd
+				;;
+			hppaosf)
+				basic_machine=hppa1.1-hp
+				basic_os=osf
+				;;
+			hppro)
+				basic_machine=hppa1.1-hp
+				basic_os=proelf
+				;;
+			i386mach)
+				basic_machine=i386-mach
+				basic_os=mach
+				;;
+			isi68 | isi)
+				basic_machine=m68k-isi
+				basic_os=sysv
+				;;
+			m68knommu)
+				basic_machine=m68k-unknown
+				basic_os=linux
+				;;
+			magnum | m3230)
+				basic_machine=mips-mips
+				basic_os=sysv
+				;;
+			merlin)
+				basic_machine=ns32k-utek
+				basic_os=sysv
+				;;
+			mingw64)
+				basic_machine=x86_64-pc
+				basic_os=mingw64
+				;;
+			mingw32)
+				basic_machine=i686-pc
+				basic_os=mingw32
+				;;
+			mingw32ce)
+				basic_machine=arm-unknown
+				basic_os=mingw32ce
+				;;
+			monitor)
+				basic_machine=m68k-rom68k
+				basic_os=coff
+				;;
+			morphos)
+				basic_machine=powerpc-unknown
+				basic_os=morphos
+				;;
+			moxiebox)
+				basic_machine=moxie-unknown
+				basic_os=moxiebox
+				;;
+			msdos)
+				basic_machine=i386-pc
+				basic_os=msdos
+				;;
+			msys)
+				basic_machine=i686-pc
+				basic_os=msys
+				;;
+			mvs)
+				basic_machine=i370-ibm
+				basic_os=mvs
+				;;
+			nacl)
+				basic_machine=le32-unknown
+				basic_os=nacl
+				;;
+			ncr3000)
+				basic_machine=i486-ncr
+				basic_os=sysv4
+				;;
+			netbsd386)
+				basic_machine=i386-pc
+				basic_os=netbsd
+				;;
+			netwinder)
+				basic_machine=armv4l-rebel
+				basic_os=linux
+				;;
+			news | news700 | news800 | news900)
+				basic_machine=m68k-sony
+				basic_os=newsos
+				;;
+			news1000)
+				basic_machine=m68030-sony
+				basic_os=newsos
+				;;
+			necv70)
+				basic_machine=v70-nec
+				basic_os=sysv
+				;;
+			nh3000)
+				basic_machine=m68k-harris
+				basic_os=cxux
+				;;
+			nh[45]000)
+				basic_machine=m88k-harris
+				basic_os=cxux
+				;;
+			nindy960)
+				basic_machine=i960-intel
+				basic_os=nindy
+				;;
+			mon960)
+				basic_machine=i960-intel
+				basic_os=mon960
+				;;
+			nonstopux)
+				basic_machine=mips-compaq
+				basic_os=nonstopux
+				;;
+			os400)
+				basic_machine=powerpc-ibm
+				basic_os=os400
+				;;
+			OSE68000 | ose68000)
+				basic_machine=m68000-ericsson
+				basic_os=ose
+				;;
+			os68k)
+				basic_machine=m68k-none
+				basic_os=os68k
+				;;
+			paragon)
+				basic_machine=i860-intel
+				basic_os=osf
+				;;
+			parisc)
+				basic_machine=hppa-unknown
+				basic_os=linux
+				;;
+			psp)
+				basic_machine=mipsallegrexel-sony
+				basic_os=psp
+				;;
+			pw32)
+				basic_machine=i586-unknown
+				basic_os=pw32
+				;;
+			rdos | rdos64)
+				basic_machine=x86_64-pc
+				basic_os=rdos
+				;;
+			rdos32)
+				basic_machine=i386-pc
+				basic_os=rdos
+				;;
+			rom68k)
+				basic_machine=m68k-rom68k
+				basic_os=coff
+				;;
+			sa29200)
+				basic_machine=a29k-amd
+				basic_os=udi
+				;;
+			sei)
+				basic_machine=mips-sei
+				basic_os=seiux
+				;;
+			sequent)
+				basic_machine=i386-sequent
+				basic_os=
+				;;
+			sps7)
+				basic_machine=m68k-bull
+				basic_os=sysv2
+				;;
+			st2000)
+				basic_machine=m68k-tandem
+				basic_os=
+				;;
+			stratus)
+				basic_machine=i860-stratus
+				basic_os=sysv4
+				;;
+			sun2)
+				basic_machine=m68000-sun
+				basic_os=
+				;;
+			sun2os3)
+				basic_machine=m68000-sun
+				basic_os=sunos3
+				;;
+			sun2os4)
+				basic_machine=m68000-sun
+				basic_os=sunos4
+				;;
+			sun3)
+				basic_machine=m68k-sun
+				basic_os=
+				;;
+			sun3os3)
+				basic_machine=m68k-sun
+				basic_os=sunos3
+				;;
+			sun3os4)
+				basic_machine=m68k-sun
+				basic_os=sunos4
+				;;
+			sun4)
+				basic_machine=sparc-sun
+				basic_os=
+				;;
+			sun4os3)
+				basic_machine=sparc-sun
+				basic_os=sunos3
+				;;
+			sun4os4)
+				basic_machine=sparc-sun
+				basic_os=sunos4
+				;;
+			sun4sol2)
+				basic_machine=sparc-sun
+				basic_os=solaris2
+				;;
+			sun386 | sun386i | roadrunner)
+				basic_machine=i386-sun
+				basic_os=
+				;;
+			sv1)
+				basic_machine=sv1-cray
+				basic_os=unicos
+				;;
+			symmetry)
+				basic_machine=i386-sequent
+				basic_os=dynix
+				;;
+			t3e)
+				basic_machine=alphaev5-cray
+				basic_os=unicos
+				;;
+			t90)
+				basic_machine=t90-cray
+				basic_os=unicos
+				;;
+			toad1)
+				basic_machine=pdp10-xkl
+				basic_os=tops20
+				;;
+			tpf)
+				basic_machine=s390x-ibm
+				basic_os=tpf
+				;;
+			udi29k)
+				basic_machine=a29k-amd
+				basic_os=udi
+				;;
+			ultra3)
+				basic_machine=a29k-nyu
+				basic_os=sym1
+				;;
+			v810 | necv810)
+				basic_machine=v810-nec
+				basic_os=none
+				;;
+			vaxv)
+				basic_machine=vax-dec
+				basic_os=sysv
+				;;
+			vms)
+				basic_machine=vax-dec
+				basic_os=vms
+				;;
+			vsta)
+				basic_machine=i386-pc
+				basic_os=vsta
+				;;
+			vxworks960)
+				basic_machine=i960-wrs
+				basic_os=vxworks
+				;;
+			vxworks68)
+				basic_machine=m68k-wrs
+				basic_os=vxworks
+				;;
+			vxworks29k)
+				basic_machine=a29k-wrs
+				basic_os=vxworks
+				;;
+			xbox)
+				basic_machine=i686-pc
+				basic_os=mingw32
+				;;
+			ymp)
+				basic_machine=ymp-cray
+				basic_os=unicos
+				;;
+			*)
+				basic_machine=$1
+				basic_os=
+				;;
+		esac
+		;;
+esac
+
+# Decode 1-component or ad-hoc basic machines
+case $basic_machine in
+	# Here we handle the default manufacturer of certain CPU types.  It is in
+	# some cases the only manufacturer, in others, it is the most popular.
+	w89k)
+		cpu=hppa1.1
+		vendor=winbond
+		;;
+	op50n)
+		cpu=hppa1.1
+		vendor=oki
+		;;
+	op60c)
+		cpu=hppa1.1
+		vendor=oki
+		;;
+	ibm*)
+		cpu=i370
+		vendor=ibm
+		;;
+	orion105)
+		cpu=clipper
+		vendor=highlevel
+		;;
+	mac | mpw | mac-mpw)
+		cpu=m68k
+		vendor=apple
+		;;
+	pmac | pmac-mpw)
+		cpu=powerpc
+		vendor=apple
+		;;
+
+	# Recognize the various machine names and aliases which stand
+	# for a CPU type and a company and sometimes even an OS.
+	3b1 | 7300 | 7300-att | att-7300 | pc7300 | safari | unixpc)
+		cpu=m68000
+		vendor=att
+		;;
+	3b*)
+		cpu=we32k
+		vendor=att
+		;;
+	bluegene*)
+		cpu=powerpc
+		vendor=ibm
+		basic_os=cnk
+		;;
+	decsystem10* | dec10*)
+		cpu=pdp10
+		vendor=dec
+		basic_os=tops10
+		;;
+	decsystem20* | dec20*)
+		cpu=pdp10
+		vendor=dec
+		basic_os=tops20
+		;;
+	delta | 3300 | motorola-3300 | motorola-delta \
+	      | 3300-motorola | delta-motorola)
+		cpu=m68k
+		vendor=motorola
+		;;
+	dpx2*)
+		cpu=m68k
+		vendor=bull
+		basic_os=sysv3
+		;;
+	encore | umax | mmax)
+		cpu=ns32k
+		vendor=encore
+		;;
+	elxsi)
+		cpu=elxsi
+		vendor=elxsi
+		basic_os=${basic_os:-bsd}
+		;;
+	fx2800)
+		cpu=i860
+		vendor=alliant
+		;;
+	genix)
+		cpu=ns32k
+		vendor=ns
+		;;
+	h3050r* | hiux*)
+		cpu=hppa1.1
+		vendor=hitachi
+		basic_os=hiuxwe2
+		;;
+	hp3k9[0-9][0-9] | hp9[0-9][0-9])
+		cpu=hppa1.0
+		vendor=hp
+		;;
+	hp9k2[0-9][0-9] | hp9k31[0-9])
+		cpu=m68000
+		vendor=hp
+		;;
+	hp9k3[2-9][0-9])
+		cpu=m68k
+		vendor=hp
+		;;
+	hp9k6[0-9][0-9] | hp6[0-9][0-9])
+		cpu=hppa1.0
+		vendor=hp
+		;;
+	hp9k7[0-79][0-9] | hp7[0-79][0-9])
+		cpu=hppa1.1
+		vendor=hp
+		;;
+	hp9k78[0-9] | hp78[0-9])
+		# FIXME: really hppa2.0-hp
+		cpu=hppa1.1
+		vendor=hp
+		;;
+	hp9k8[67]1 | hp8[67]1 | hp9k80[24] | hp80[24] | hp9k8[78]9 | hp8[78]9 | hp9k893 | hp893)
+		# FIXME: really hppa2.0-hp
+		cpu=hppa1.1
+		vendor=hp
+		;;
+	hp9k8[0-9][13679] | hp8[0-9][13679])
+		cpu=hppa1.1
+		vendor=hp
+		;;
+	hp9k8[0-9][0-9] | hp8[0-9][0-9])
+		cpu=hppa1.0
+		vendor=hp
+		;;
+	i*86v32)
+		cpu=`echo "$1" | sed -e 's/86.*/86/'`
+		vendor=pc
+		basic_os=sysv32
+		;;
+	i*86v4*)
+		cpu=`echo "$1" | sed -e 's/86.*/86/'`
+		vendor=pc
+		basic_os=sysv4
+		;;
+	i*86v)
+		cpu=`echo "$1" | sed -e 's/86.*/86/'`
+		vendor=pc
+		basic_os=sysv
+		;;
+	i*86sol2)
+		cpu=`echo "$1" | sed -e 's/86.*/86/'`
+		vendor=pc
+		basic_os=solaris2
+		;;
+	j90 | j90-cray)
+		cpu=j90
+		vendor=cray
+		basic_os=${basic_os:-unicos}
+		;;
+	iris | iris4d)
+		cpu=mips
+		vendor=sgi
+		case $basic_os in
+		    irix*)
+			;;
+		    *)
+			basic_os=irix4
+			;;
+		esac
+		;;
+	miniframe)
+		cpu=m68000
+		vendor=convergent
+		;;
+	*mint | mint[0-9]* | *MiNT | *MiNT[0-9]*)
+		cpu=m68k
+		vendor=atari
+		basic_os=mint
+		;;
+	news-3600 | risc-news)
+		cpu=mips
+		vendor=sony
+		basic_os=newsos
+		;;
+	next | m*-next)
+		cpu=m68k
+		vendor=next
+		case $basic_os in
+		    openstep*)
+		        ;;
+		    nextstep*)
+			;;
+		    ns2*)
+		      basic_os=nextstep2
+			;;
+		    *)
+		      basic_os=nextstep3
+			;;
+		esac
+		;;
+	np1)
+		cpu=np1
+		vendor=gould
+		;;
+	op50n-* | op60c-*)
+		cpu=hppa1.1
+		vendor=oki
+		basic_os=proelf
+		;;
+	pa-hitachi)
+		cpu=hppa1.1
+		vendor=hitachi
+		basic_os=hiuxwe2
+		;;
+	pbd)
+		cpu=sparc
+		vendor=tti
+		;;
+	pbb)
+		cpu=m68k
+		vendor=tti
+		;;
+	pc532)
+		cpu=ns32k
+		vendor=pc532
+		;;
+	pn)
+		cpu=pn
+		vendor=gould
+		;;
+	power)
+		cpu=power
+		vendor=ibm
+		;;
+	ps2)
+		cpu=i386
+		vendor=ibm
+		;;
+	rm[46]00)
+		cpu=mips
+		vendor=siemens
+		;;
+	rtpc | rtpc-*)
+		cpu=romp
+		vendor=ibm
+		;;
+	sde)
+		cpu=mipsisa32
+		vendor=sde
+		basic_os=${basic_os:-elf}
+		;;
+	simso-wrs)
+		cpu=sparclite
+		vendor=wrs
+		basic_os=vxworks
+		;;
+	tower | tower-32)
+		cpu=m68k
+		vendor=ncr
+		;;
+	vpp*|vx|vx-*)
+		cpu=f301
+		vendor=fujitsu
+		;;
+	w65)
+		cpu=w65
+		vendor=wdc
+		;;
+	w89k-*)
+		cpu=hppa1.1
+		vendor=winbond
+		basic_os=proelf
+		;;
+	none)
+		cpu=none
+		vendor=none
+		;;
+	leon|leon[3-9])
+		cpu=sparc
+		vendor=$basic_machine
+		;;
+	leon-*|leon[3-9]-*)
+		cpu=sparc
+		vendor=`echo "$basic_machine" | sed 's/-.*//'`
+		;;
+
+	*-*)
+		# shellcheck disable=SC2162
+		saved_IFS=$IFS
+		IFS="-" read cpu vendor <<EOF
+$basic_machine
+EOF
+		IFS=$saved_IFS
+		;;
+	# We use `pc' rather than `unknown'
+	# because (1) that's what they normally are, and
+	# (2) the word "unknown" tends to confuse beginning users.
+	i*86 | x86_64)
+		cpu=$basic_machine
+		vendor=pc
+		;;
+	# These rules are duplicated from below for sake of the special case above;
+	# i.e. things that normalized to x86 arches should also default to "pc"
+	pc98)
+		cpu=i386
+		vendor=pc
+		;;
+	x64 | amd64)
+		cpu=x86_64
+		vendor=pc
+		;;
+	# Recognize the basic CPU types without company name.
+	*)
+		cpu=$basic_machine
+		vendor=unknown
+		;;
+esac
+
+unset -v basic_machine
+
+# Decode basic machines in the full and proper CPU-Company form.
+case $cpu-$vendor in
+	# Here we handle the default manufacturer of certain CPU types in canonical form. It is in
+	# some cases the only manufacturer, in others, it is the most popular.
+	craynv-unknown)
+		vendor=cray
+		basic_os=${basic_os:-unicosmp}
+		;;
+	c90-unknown | c90-cray)
+		vendor=cray
+		basic_os=${Basic_os:-unicos}
+		;;
+	fx80-unknown)
+		vendor=alliant
+		;;
+	romp-unknown)
+		vendor=ibm
+		;;
+	mmix-unknown)
+		vendor=knuth
+		;;
+	microblaze-unknown | microblazeel-unknown)
+		vendor=xilinx
+		;;
+	rs6000-unknown)
+		vendor=ibm
+		;;
+	vax-unknown)
+		vendor=dec
+		;;
+	pdp11-unknown)
+		vendor=dec
+		;;
+	we32k-unknown)
+		vendor=att
+		;;
+	cydra-unknown)
+		vendor=cydrome
+		;;
+	i370-ibm*)
+		vendor=ibm
+		;;
+	orion-unknown)
+		vendor=highlevel
+		;;
+	xps-unknown | xps100-unknown)
+		cpu=xps100
+		vendor=honeywell
+		;;
+
+	# Here we normalize CPU types with a missing or matching vendor
+	dpx20-unknown | dpx20-bull)
+		cpu=rs6000
+		vendor=bull
+		basic_os=${basic_os:-bosx}
+		;;
+
+	# Here we normalize CPU types irrespective of the vendor
+	amd64-*)
+		cpu=x86_64
+		;;
+	blackfin-*)
+		cpu=bfin
+		basic_os=linux
+		;;
+	c54x-*)
+		cpu=tic54x
+		;;
+	c55x-*)
+		cpu=tic55x
+		;;
+	c6x-*)
+		cpu=tic6x
+		;;
+	e500v[12]-*)
+		cpu=powerpc
+		basic_os=${basic_os}"spe"
+		;;
+	mips3*-*)
+		cpu=mips64
+		;;
+	ms1-*)
+		cpu=mt
+		;;
+	m68knommu-*)
+		cpu=m68k
+		basic_os=linux
+		;;
+	m9s12z-* | m68hcs12z-* | hcs12z-* | s12z-*)
+		cpu=s12z
+		;;
+	openrisc-*)
+		cpu=or32
+		;;
+	parisc-*)
+		cpu=hppa
+		basic_os=linux
+		;;
+	pentium-* | p5-* | k5-* | k6-* | nexgen-* | viac3-*)
+		cpu=i586
+		;;
+	pentiumpro-* | p6-* | 6x86-* | athlon-* | athalon_*-*)
+		cpu=i686
+		;;
+	pentiumii-* | pentium2-* | pentiumiii-* | pentium3-*)
+		cpu=i686
+		;;
+	pentium4-*)
+		cpu=i786
+		;;
+	pc98-*)
+		cpu=i386
+		;;
+	ppc-* | ppcbe-*)
+		cpu=powerpc
+		;;
+	ppcle-* | powerpclittle-*)
+		cpu=powerpcle
+		;;
+	ppc64-*)
+		cpu=powerpc64
+		;;
+	ppc64le-* | powerpc64little-*)
+		cpu=powerpc64le
+		;;
+	sb1-*)
+		cpu=mipsisa64sb1
+		;;
+	sb1el-*)
+		cpu=mipsisa64sb1el
+		;;
+	sh5e[lb]-*)
+		cpu=`echo "$cpu" | sed 's/^\(sh.\)e\(.\)$/\1\2e/'`
+		;;
+	spur-*)
+		cpu=spur
+		;;
+	strongarm-* | thumb-*)
+		cpu=arm
+		;;
+	tx39-*)
+		cpu=mipstx39
+		;;
+	tx39el-*)
+		cpu=mipstx39el
+		;;
+	x64-*)
+		cpu=x86_64
+		;;
+	xscale-* | xscalee[bl]-*)
+		cpu=`echo "$cpu" | sed 's/^xscale/arm/'`
+		;;
+	arm64-*)
+		cpu=aarch64
+		;;
+
+	# Recognize the canonical CPU Types that limit and/or modify the
+	# company names they are paired with.
+	cr16-*)
+		basic_os=${basic_os:-elf}
+		;;
+	crisv32-* | etraxfs*-*)
+		cpu=crisv32
+		vendor=axis
+		;;
+	cris-* | etrax*-*)
+		cpu=cris
+		vendor=axis
+		;;
+	crx-*)
+		basic_os=${basic_os:-elf}
+		;;
+	neo-tandem)
+		cpu=neo
+		vendor=tandem
+		;;
+	nse-tandem)
+		cpu=nse
+		vendor=tandem
+		;;
+	nsr-tandem)
+		cpu=nsr
+		vendor=tandem
+		;;
+	nsv-tandem)
+		cpu=nsv
+		vendor=tandem
+		;;
+	nsx-tandem)
+		cpu=nsx
+		vendor=tandem
+		;;
+	mipsallegrexel-sony)
+		cpu=mipsallegrexel
+		vendor=sony
+		;;
+	tile*-*)
+		basic_os=${basic_os:-linux-gnu}
+		;;
+
+	*)
+		# Recognize the canonical CPU types that are allowed with any
+		# company name.
+		case $cpu in
+			1750a | 580 \
+			| a29k \
+			| aarch64 | aarch64_be \
+			| abacus \
+			| alpha | alphaev[4-8] | alphaev56 | alphaev6[78] \
+			| alpha64 | alpha64ev[4-8] | alpha64ev56 | alpha64ev6[78] \
+			| alphapca5[67] | alpha64pca5[67] \
+			| am33_2.0 \
+			| amdgcn \
+			| arc | arceb | arc32 | arc64 \
+			| arm | arm[lb]e | arme[lb] | armv* \
+			| avr | avr32 \
+			| asmjs \
+			| ba \
+			| be32 | be64 \
+			| bfin | bpf | bs2000 \
+			| c[123]* | c30 | [cjt]90 | c4x \
+			| c8051 | clipper | craynv | csky | cydra \
+			| d10v | d30v | dlx | dsp16xx \
+			| e2k | elxsi | epiphany \
+			| f30[01] | f700 | fido | fr30 | frv | ft32 | fx80 \
+			| h8300 | h8500 \
+			| hppa | hppa1.[01] | hppa2.0 | hppa2.0[nw] | hppa64 \
+			| hexagon \
+			| i370 | i*86 | i860 | i960 | ia16 | ia64 \
+			| ip2k | iq2000 \
+			| k1om \
+			| le32 | le64 \
+			| lm32 \
+			| loongarch32 | loongarch64 | loongarchx32 \
+			| m32c | m32r | m32rle \
+			| m5200 | m68000 | m680[012346]0 | m68360 | m683?2 | m68k \
+			| m6811 | m68hc11 | m6812 | m68hc12 | m68hcs12x \
+			| m88110 | m88k | maxq | mb | mcore | mep | metag \
+			| microblaze | microblazeel \
+			| mips | mipsbe | mipseb | mipsel | mipsle \
+			| mips16 \
+			| mips64 | mips64eb | mips64el \
+			| mips64octeon | mips64octeonel \
+			| mips64orion | mips64orionel \
+			| mips64r5900 | mips64r5900el \
+			| mips64vr | mips64vrel \
+			| mips64vr4100 | mips64vr4100el \
+			| mips64vr4300 | mips64vr4300el \
+			| mips64vr5000 | mips64vr5000el \
+			| mips64vr5900 | mips64vr5900el \
+			| mipsisa32 | mipsisa32el \
+			| mipsisa32r2 | mipsisa32r2el \
+			| mipsisa32r3 | mipsisa32r3el \
+			| mipsisa32r5 | mipsisa32r5el \
+			| mipsisa32r6 | mipsisa32r6el \
+			| mipsisa64 | mipsisa64el \
+			| mipsisa64r2 | mipsisa64r2el \
+			| mipsisa64r3 | mipsisa64r3el \
+			| mipsisa64r5 | mipsisa64r5el \
+			| mipsisa64r6 | mipsisa64r6el \
+			| mipsisa64sb1 | mipsisa64sb1el \
+			| mipsisa64sr71k | mipsisa64sr71kel \
+			| mipsr5900 | mipsr5900el \
+			| mipstx39 | mipstx39el \
+			| mmix \
+			| mn10200 | mn10300 \
+			| moxie \
+			| mt \
+			| msp430 \
+			| nds32 | nds32le | nds32be \
+			| nfp \
+			| nios | nios2 | nios2eb | nios2el \
+			| none | np1 | ns16k | ns32k | nvptx \
+			| open8 \
+			| or1k* \
+			| or32 \
+			| orion \
+			| picochip \
+			| pdp10 | pdp11 | pj | pjl | pn | power \
+			| powerpc | powerpc64 | powerpc64le | powerpcle | powerpcspe \
+			| pru \
+			| pyramid \
+			| riscv | riscv32 | riscv32be | riscv64 | riscv64be \
+			| rl78 | romp | rs6000 | rx \
+			| s390 | s390x \
+			| score \
+			| sh | shl \
+			| sh[1234] | sh[24]a | sh[24]ae[lb] | sh[23]e | she[lb] | sh[lb]e \
+			| sh[1234]e[lb] |  sh[12345][lb]e | sh[23]ele | sh64 | sh64le \
+			| sparc | sparc64 | sparc64b | sparc64v | sparc86x | sparclet \
+			| sparclite \
+			| sparcv8 | sparcv9 | sparcv9b | sparcv9v | sv1 | sx* \
+			| spu \
+			| tahoe \
+			| thumbv7* \
+			| tic30 | tic4x | tic54x | tic55x | tic6x | tic80 \
+			| tron \
+			| ubicom32 \
+			| v70 | v850 | v850e | v850e1 | v850es | v850e2 | v850e2v3 \
+			| vax \
+			| visium \
+			| w65 \
+			| wasm32 | wasm64 \
+			| we32k \
+			| x86 | x86_64 | xc16x | xgate | xps100 \
+			| xstormy16 | xtensa* \
+			| ymp \
+			| z8k | z80)
+				;;
+
+			*)
+				echo Invalid configuration \`"$1"\': machine \`"$cpu-$vendor"\' not recognized 1>&2
+				exit 1
+				;;
+		esac
+		;;
+esac
+
+# Here we canonicalize certain aliases for manufacturers.
+case $vendor in
+	digital*)
+		vendor=dec
+		;;
+	commodore*)
+		vendor=cbm
+		;;
+	*)
+		;;
+esac
+
+# Decode manufacturer-specific aliases for certain operating systems.
+
+if test x$basic_os != x
+then
+
+# First recognize some ad-hoc cases, or perhaps split kernel-os, or else just
+# set os.
+case $basic_os in
+	gnu/linux*)
+		kernel=linux
+		os=`echo "$basic_os" | sed -e 's|gnu/linux|gnu|'`
+		;;
+	os2-emx)
+		kernel=os2
+		os=`echo "$basic_os" | sed -e 's|os2-emx|emx|'`
+		;;
+	nto-qnx*)
+		kernel=nto
+		os=`echo "$basic_os" | sed -e 's|nto-qnx|qnx|'`
+		;;
+	*-*)
+		# shellcheck disable=SC2162
+		saved_IFS=$IFS
+		IFS="-" read kernel os <<EOF
+$basic_os
+EOF
+		IFS=$saved_IFS
+		;;
+	# Default OS when just kernel was specified
+	nto*)
+		kernel=nto
+		os=`echo "$basic_os" | sed -e 's|nto|qnx|'`
+		;;
+	linux*)
+		kernel=linux
+		os=`echo "$basic_os" | sed -e 's|linux|gnu|'`
+		;;
+	*)
+		kernel=
+		os=$basic_os
+		;;
+esac
+
+# Now, normalize the OS (knowing we just have one component, it's not a kernel,
+# etc.)
+case $os in
+	# First match some system type aliases that might get confused
+	# with valid system types.
+	# solaris* is a basic system type, with this one exception.
+	auroraux)
+		os=auroraux
+		;;
+	bluegene*)
+		os=cnk
+		;;
+	solaris1 | solaris1.*)
+		os=`echo "$os" | sed -e 's|solaris1|sunos4|'`
+		;;
+	solaris)
+		os=solaris2
+		;;
+	unixware*)
+		os=sysv4.2uw
+		;;
+	# es1800 is here to avoid being matched by es* (a different OS)
+	es1800*)
+		os=ose
+		;;
+	# Some version numbers need modification
+	chorusos*)
+		os=chorusos
+		;;
+	isc)
+		os=isc2.2
+		;;
+	sco6)
+		os=sco5v6
+		;;
+	sco5)
+		os=sco3.2v5
+		;;
+	sco4)
+		os=sco3.2v4
+		;;
+	sco3.2.[4-9]*)
+		os=`echo "$os" | sed -e 's/sco3.2./sco3.2v/'`
+		;;
+	sco*v* | scout)
+		# Don't match below
+		;;
+	sco*)
+		os=sco3.2v2
+		;;
+	psos*)
+		os=psos
+		;;
+	qnx*)
+		os=qnx
+		;;
+	hiux*)
+		os=hiuxwe2
+		;;
+	lynx*178)
+		os=lynxos178
+		;;
+	lynx*5)
+		os=lynxos5
+		;;
+	lynxos*)
+		# don't get caught up in next wildcard
+		;;
+	lynx*)
+		os=lynxos
+		;;
+	mac[0-9]*)
+		os=`echo "$os" | sed -e 's|mac|macos|'`
+		;;
+	opened*)
+		os=openedition
+		;;
+	os400*)
+		os=os400
+		;;
+	sunos5*)
+		os=`echo "$os" | sed -e 's|sunos5|solaris2|'`
+		;;
+	sunos6*)
+		os=`echo "$os" | sed -e 's|sunos6|solaris3|'`
+		;;
+	wince*)
+		os=wince
+		;;
+	utek*)
+		os=bsd
+		;;
+	dynix*)
+		os=bsd
+		;;
+	acis*)
+		os=aos
+		;;
+	atheos*)
+		os=atheos
+		;;
+	syllable*)
+		os=syllable
+		;;
+	386bsd)
+		os=bsd
+		;;
+	ctix* | uts*)
+		os=sysv
+		;;
+	nova*)
+		os=rtmk-nova
+		;;
+	ns2)
+		os=nextstep2
+		;;
+	# Preserve the version number of sinix5.
+	sinix5.*)
+		os=`echo "$os" | sed -e 's|sinix|sysv|'`
+		;;
+	sinix*)
+		os=sysv4
+		;;
+	tpf*)
+		os=tpf
+		;;
+	triton*)
+		os=sysv3
+		;;
+	oss*)
+		os=sysv3
+		;;
+	svr4*)
+		os=sysv4
+		;;
+	svr3)
+		os=sysv3
+		;;
+	sysvr4)
+		os=sysv4
+		;;
+	ose*)
+		os=ose
+		;;
+	*mint | mint[0-9]* | *MiNT | MiNT[0-9]*)
+		os=mint
+		;;
+	dicos*)
+		os=dicos
+		;;
+	pikeos*)
+		# Until real need of OS specific support for
+		# particular features comes up, bare metal
+		# configurations are quite functional.
+		case $cpu in
+		    arm*)
+			os=eabi
+			;;
+		    *)
+			os=elf
+			;;
+		esac
+		;;
+	*)
+		# No normalization, but not necessarily accepted, that comes below.
+		;;
+esac
+
+else
+
+# Here we handle the default operating systems that come with various machines.
+# The value should be what the vendor currently ships out the door with their
+# machine or put another way, the most popular os provided with the machine.
+
+# Note that if you're going to try to match "-MANUFACTURER" here (say,
+# "-sun"), then you have to tell the case statement up towards the top
+# that MANUFACTURER isn't an operating system.  Otherwise, code above
+# will signal an error saying that MANUFACTURER isn't an operating
+# system, and we'll never get to this point.
+
+kernel=
+case $cpu-$vendor in
+	score-*)
+		os=elf
+		;;
+	spu-*)
+		os=elf
+		;;
+	*-acorn)
+		os=riscix1.2
+		;;
+	arm*-rebel)
+		kernel=linux
+		os=gnu
+		;;
+	arm*-semi)
+		os=aout
+		;;
+	c4x-* | tic4x-*)
+		os=coff
+		;;
+	c8051-*)
+		os=elf
+		;;
+	clipper-intergraph)
+		os=clix
+		;;
+	hexagon-*)
+		os=elf
+		;;
+	tic54x-*)
+		os=coff
+		;;
+	tic55x-*)
+		os=coff
+		;;
+	tic6x-*)
+		os=coff
+		;;
+	# This must come before the *-dec entry.
+	pdp10-*)
+		os=tops20
+		;;
+	pdp11-*)
+		os=none
+		;;
+	*-dec | vax-*)
+		os=ultrix4.2
+		;;
+	m68*-apollo)
+		os=domain
+		;;
+	i386-sun)
+		os=sunos4.0.2
+		;;
+	m68000-sun)
+		os=sunos3
+		;;
+	m68*-cisco)
+		os=aout
+		;;
+	mep-*)
+		os=elf
+		;;
+	mips*-cisco)
+		os=elf
+		;;
+	mips*-*)
+		os=elf
+		;;
+	or32-*)
+		os=coff
+		;;
+	*-tti)	# must be before sparc entry or we get the wrong os.
+		os=sysv3
+		;;
+	sparc-* | *-sun)
+		os=sunos4.1.1
+		;;
+	pru-*)
+		os=elf
+		;;
+	*-be)
+		os=beos
+		;;
+	*-ibm)
+		os=aix
+		;;
+	*-knuth)
+		os=mmixware
+		;;
+	*-wec)
+		os=proelf
+		;;
+	*-winbond)
+		os=proelf
+		;;
+	*-oki)
+		os=proelf
+		;;
+	*-hp)
+		os=hpux
+		;;
+	*-hitachi)
+		os=hiux
+		;;
+	i860-* | *-att | *-ncr | *-altos | *-motorola | *-convergent)
+		os=sysv
+		;;
+	*-cbm)
+		os=amigaos
+		;;
+	*-dg)
+		os=dgux
+		;;
+	*-dolphin)
+		os=sysv3
+		;;
+	m68k-ccur)
+		os=rtu
+		;;
+	m88k-omron*)
+		os=luna
+		;;
+	*-next)
+		os=nextstep
+		;;
+	*-sequent)
+		os=ptx
+		;;
+	*-crds)
+		os=unos
+		;;
+	*-ns)
+		os=genix
+		;;
+	i370-*)
+		os=mvs
+		;;
+	*-gould)
+		os=sysv
+		;;
+	*-highlevel)
+		os=bsd
+		;;
+	*-encore)
+		os=bsd
+		;;
+	*-sgi)
+		os=irix
+		;;
+	*-siemens)
+		os=sysv4
+		;;
+	*-masscomp)
+		os=rtu
+		;;
+	f30[01]-fujitsu | f700-fujitsu)
+		os=uxpv
+		;;
+	*-rom68k)
+		os=coff
+		;;
+	*-*bug)
+		os=coff
+		;;
+	*-apple)
+		os=macos
+		;;
+	*-atari*)
+		os=mint
+		;;
+	*-wrs)
+		os=vxworks
+		;;
+	*)
+		os=none
+		;;
+esac
+
+fi
+
+# Now, validate our (potentially fixed-up) OS.
+case $os in
+	# Sometimes we do "kernel-libc", so those need to count as OSes.
+	musl* | newlib* | relibc* | uclibc*)
+		;;
+	# Likewise for "kernel-abi"
+	eabi* | gnueabi*)
+		;;
+	# VxWorks passes extra cpu info in the 4th filed.
+	simlinux | simwindows | spe)
+		;;
+	# Now accept the basic system types.
+	# The portable systems comes first.
+	# Each alternative MUST end in a * to match a version number.
+	gnu* | android* | bsd* | mach* | minix* | genix* | ultrix* | irix* \
+	     | *vms* | esix* | aix* | cnk* | sunos | sunos[34]* \
+	     | hpux* | unos* | osf* | luna* | dgux* | auroraux* | solaris* \
+	     | sym* |  plan9* | psp* | sim* | xray* | os68k* | v88r* \
+	     | hiux* | abug | nacl* | netware* | windows* \
+	     | os9* | macos* | osx* | ios* \
+	     | mpw* | magic* | mmixware* | mon960* | lnews* \
+	     | amigaos* | amigados* | msdos* | newsos* | unicos* | aof* \
+	     | aos* | aros* | cloudabi* | sortix* | twizzler* \
+	     | nindy* | vxsim* | vxworks* | ebmon* | hms* | mvs* \
+	     | clix* | riscos* | uniplus* | iris* | isc* | rtu* | xenix* \
+	     | mirbsd* | netbsd* | dicos* | openedition* | ose* \
+	     | bitrig* | openbsd* | secbsd* | solidbsd* | libertybsd* | os108* \
+	     | ekkobsd* | freebsd* | riscix* | lynxos* | os400* \
+	     | bosx* | nextstep* | cxux* | aout* | elf* | oabi* \
+	     | ptx* | coff* | ecoff* | winnt* | domain* | vsta* \
+	     | udi* | lites* | ieee* | go32* | aux* | hcos* \
+	     | chorusrdb* | cegcc* | glidix* | serenity* \
+	     | cygwin* | msys* | pe* | moss* | proelf* | rtems* \
+	     | midipix* | mingw32* | mingw64* | mint* \
+	     | uxpv* | beos* | mpeix* | udk* | moxiebox* \
+	     | interix* | uwin* | mks* | rhapsody* | darwin* \
+	     | openstep* | oskit* | conix* | pw32* | nonstopux* \
+	     | storm-chaos* | tops10* | tenex* | tops20* | its* \
+	     | os2* | vos* | palmos* | uclinux* | nucleus* | morphos* \
+	     | scout* | superux* | sysv* | rtmk* | tpf* | windiss* \
+	     | powermax* | dnix* | nx6 | nx7 | sei* | dragonfly* \
+	     | skyos* | haiku* | rdos* | toppers* | drops* | es* \
+	     | onefs* | tirtos* | phoenix* | fuchsia* | redox* | bme* \
+	     | midnightbsd* | amdhsa* | unleashed* | emscripten* | wasi* \
+	     | nsk* | powerunix* | genode* | zvmoe* | qnx* | emx* | zephyr* \
+	     | fiwix* )
+		;;
+	# This one is extra strict with allowed versions
+	sco3.2v2 | sco3.2v[4-9]* | sco5v6*)
+		# Don't forget version if it is 3.2v4 or newer.
+		;;
+	none)
+		;;
+	*)
+		echo Invalid configuration \`"$1"\': OS \`"$os"\' not recognized 1>&2
+		exit 1
+		;;
+esac
+
+# As a final step for OS-related things, validate the OS-kernel combination
+# (given a valid OS), if there is a kernel.
+case $kernel-$os in
+	linux-gnu* | linux-dietlibc* | linux-android* | linux-newlib* \
+		   | linux-musl* | linux-relibc* | linux-uclibc* )
+		;;
+	uclinux-uclibc* )
+		;;
+	-dietlibc* | -newlib* | -musl* | -relibc* | -uclibc* )
+		# These are just libc implementations, not actual OSes, and thus
+		# require a kernel.
+		echo "Invalid configuration \`$1': libc \`$os' needs explicit kernel." 1>&2
+		exit 1
+		;;
+	kfreebsd*-gnu* | kopensolaris*-gnu*)
+		;;
+	vxworks-simlinux | vxworks-simwindows | vxworks-spe)
+		;;
+	nto-qnx*)
+		;;
+	os2-emx)
+		;;
+	*-eabi* | *-gnueabi*)
+		;;
+	-*)
+		# Blank kernel with real OS is always fine.
+		;;
+	*-*)
+		echo "Invalid configuration \`$1': Kernel \`$kernel' not known to work with OS \`$os'." 1>&2
+		exit 1
+		;;
+esac
+
+# Here we handle the case where we know the os, and the CPU type, but not the
+# manufacturer.  We pick the logical manufacturer.
+case $vendor in
+	unknown)
+		case $cpu-$os in
+			*-riscix*)
+				vendor=acorn
+				;;
+			*-sunos*)
+				vendor=sun
+				;;
+			*-cnk* | *-aix*)
+				vendor=ibm
+				;;
+			*-beos*)
+				vendor=be
+				;;
+			*-hpux*)
+				vendor=hp
+				;;
+			*-mpeix*)
+				vendor=hp
+				;;
+			*-hiux*)
+				vendor=hitachi
+				;;
+			*-unos*)
+				vendor=crds
+				;;
+			*-dgux*)
+				vendor=dg
+				;;
+			*-luna*)
+				vendor=omron
+				;;
+			*-genix*)
+				vendor=ns
+				;;
+			*-clix*)
+				vendor=intergraph
+				;;
+			*-mvs* | *-opened*)
+				vendor=ibm
+				;;
+			*-os400*)
+				vendor=ibm
+				;;
+			s390-* | s390x-*)
+				vendor=ibm
+				;;
+			*-ptx*)
+				vendor=sequent
+				;;
+			*-tpf*)
+				vendor=ibm
+				;;
+			*-vxsim* | *-vxworks* | *-windiss*)
+				vendor=wrs
+				;;
+			*-aux*)
+				vendor=apple
+				;;
+			*-hms*)
+				vendor=hitachi
+				;;
+			*-mpw* | *-macos*)
+				vendor=apple
+				;;
+			*-*mint | *-mint[0-9]* | *-*MiNT | *-MiNT[0-9]*)
+				vendor=atari
+				;;
+			*-vos*)
+				vendor=stratus
+				;;
+		esac
+		;;
+esac
+
+echo "$cpu-$vendor-${kernel:+$kernel-}$os"
+exit
+
+# Local variables:
+# eval: (add-hook 'before-save-hook 'time-stamp)
+# time-stamp-start: "timestamp='"
+# time-stamp-format: "%:y-%02m-%02d"
+# time-stamp-end: "'"
+# End:
diff --git a/recipes/libgtextutils/meta.yaml b/recipes/libgtextutils/meta.yaml
index 168fbcbfab060..e5b3abc32c1f9 100644
--- a/recipes/libgtextutils/meta.yaml
+++ b/recipes/libgtextutils/meta.yaml
@@ -1,17 +1,20 @@
+{% set name = "libgtextutils" %}
+{% set version = "0.7" %}
+
 package:
-  name: libgtextutils
-  version: 0.7
+  name: {{ name }}
+  version: {{ version }}
 
 source:
-  url: https://github.com/agordon/libgtextutils/releases/download/0.7/libgtextutils-0.7.tar.gz
+  url: https://github.com/agordon/{{ name }}/releases/download/{{ version }}/{{ name }}-{{ version }}.tar.gz
   sha256: 792e0ea3c96ffe3ad65617a104b7dc50684932bc96d2adab501c952fd65c3e4a
   patches:
     - patch
 
 build:
-  number: 11
+  number: 12
   run_exports:
-    - {{ pin_subpackage('libgtextutils', max_pin='x.x') }}
+    - {{ pin_subpackage(name, max_pin='x.x') }}
 
 requirements:
   build:
@@ -30,3 +33,7 @@ about:
   license: AGPL
   summary: Gordon Text utils Library
   license_file: COPYING
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/libmaus2/build.sh b/recipes/libmaus2/build.sh
index 7cead9ea7ceff..cdd58fb79e892 100644
--- a/recipes/libmaus2/build.sh
+++ b/recipes/libmaus2/build.sh
@@ -6,5 +6,5 @@ export LIBS="-lstdc++fs -lcurl"
 
 cat config.log
 
-make
+make -j${CPU_COUNT}
 make install
diff --git a/recipes/libmaus2/meta.yaml b/recipes/libmaus2/meta.yaml
index defd4a7cbe7c2..455532e4245a8 100644
--- a/recipes/libmaus2/meta.yaml
+++ b/recipes/libmaus2/meta.yaml
@@ -10,7 +10,7 @@ package:
 build:
   # There's some issue with clang
   skip: True  # [osx]
-  number: 4
+  number: 5
   run_exports:
     - {{ pin_subpackage('libmaus2', max_pin='x.x') }}
 
@@ -50,3 +50,7 @@ about:
 test:
   commands:
     - echo
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/libssw/meta.yaml b/recipes/libssw/meta.yaml
index 56eccfd639fb7..7d8a5d9de75a6 100644
--- a/recipes/libssw/meta.yaml
+++ b/recipes/libssw/meta.yaml
@@ -1,19 +1,19 @@
-{% set version = "1.1" %}
-{% set md5 = "d968cd252eaa21552725829e1da94de2" %}
+{% set version = "1.2.5" %}
+{% set sha256 = "b294c0cb6f0f3d578db11b4112a88b20583b9d4190b0a9cf04d83bb6a8704d9a" %}
 
 package:
   name: libssw
   version: {{ version }}
 
 build:
-  number: 5
+  number: 0
   skip: True  # [py>=30 or osx]
   run_exports:
     - {{ pin_subpackage('libssw', max_pin='x.x') }}
 
 source:
   url: https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library/archive/v{{ version }}.tar.gz
-  md5: {{ md5 }}
+  sha256: {{ sha256 }}
 
 requirements:
   build:
diff --git a/recipes/liftover/meta.yaml b/recipes/liftover/meta.yaml
index 4e19245919b8b..8c484a1d7355b 100644
--- a/recipes/liftover/meta.yaml
+++ b/recipes/liftover/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "liftover" %}
-{% set version = "1.1.16" %}
-{% set sha256 = "fc1c92ef3279b61a2ccfd8c3cdb9cb4829b11a0f9356d15097c611fc0064fd0f" %}
+{% set version = "1.2.2" %}
+{% set sha256 = "f858aed016227882263d369969790adf6df2c07399e16f063aec8a248a2b4513" %}
 
 package:
   name: {{ name|lower }}
@@ -12,8 +12,10 @@ source:
 
 build:
   number: 0
-  skip: True  # [py < 37]
-  script: {{ PYTHON }} -m pip install . --use-pep517 --no-deps -vv
+  skip: True  # [py < 38]
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
+  run_exports:
+    - {{ pin_subpackage('liftover', max_pin="x") }}
 
 requirements:
   build:
@@ -22,7 +24,6 @@ requirements:
     - python
     - cython
     - pip
-    - setuptools
     - wheel
     - zlib
   run:
@@ -37,6 +38,7 @@ about:
   home: 'https://github.com/jeremymcrae/liftover'
   summary: 'A Python package for converting point coordinates between genome assemblies, inspired by pyliftover.'
   license: MIT
+  license_family: MIT
   license_file: LICENSE.txt
   dev_url: 'https://pypi.org/project/liftover/'
 
diff --git a/recipes/lighter/build.sh b/recipes/lighter/build.sh
index 5cb63338fa2d8..a4d8ba8f7756a 100644
--- a/recipes/lighter/build.sh
+++ b/recipes/lighter/build.sh
@@ -1,5 +1,7 @@
-#!/bin/sh
+#!/bin/bash
 
-mkdir -p $PREFIX/bin
-make CXX=${CXX} CXXFLAGS="${CXXFLAGS}" LDFLAGS="${LDFLAGS}"
-cp lighter $PREFIX/bin
+mkdir -p ${PREFIX}/bin
+
+make CXX="${CXX}" CXXFLAGS="${CXXFLAGS} -O3 -I${PREFIX}/include" LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
+
+cp -f lighter ${PREFIX}/bin
diff --git a/recipes/lighter/meta.yaml b/recipes/lighter/meta.yaml
index 11f471c96217b..b33f35505bc38 100644
--- a/recipes/lighter/meta.yaml
+++ b/recipes/lighter/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "Lighter" %}
-{% set version = "1.1.2" %}
-{% set sha256 = "89abc34137beffc43382fbe53deb25c3c2f5cee7e6ca2b7f669931d70065993a" %}
+{% set version = "1.1.3" %}
+{% set sha256 = "c8a251c410805f82dad77e40661f0faf14ec82dedb3ff717094ba8ff4ef94465" %}
 
 package:
   name: '{{ name|lower }}'
@@ -13,7 +13,9 @@ source:
     - 0001-makefile.patch
 
 build:
-  number: 6
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('lighter', max_pin="x") }}
 
 requirements:
   build:
@@ -21,8 +23,6 @@ requirements:
     - {{ compiler('cxx') }}
   host:
     - zlib
-  run:
-    - zlib
 
 test:
   commands:
@@ -31,10 +31,14 @@ test:
 
 about:
   home: https://github.com/mourisl/Lighter
-  license: GPLv3
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
   summary: Lighter is a kmer-based error correction method for whole genome sequencing data
+  dev_url: https://github.com/mourisl/Lighter
 
 extra:
   identifiers:
     - biotools:{{ name }}
+    - doi:10.1186/s13059-014-0509-9
+    - usegalaxy-eu:lighter
diff --git a/recipes/lima/meta.yaml b/recipes/lima/meta.yaml
index 1f7c082142b4f..53d51fabd39ef 100644
--- a/recipes/lima/meta.yaml
+++ b/recipes/lima/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "lima" %}
-{% set version = "2.7.1" %}
+{% set version = "2.9.0" %}
 
 package:
   name: {{ name }}
@@ -7,11 +7,14 @@ package:
 
 source:
   url: https://github.com/PacificBiosciences/barcoding/releases/download/v{{ version }}/lima.tar.gz
-  sha256: 388eb4746be3bf262e70c406f82519a8ef56e2a1891e9f2f3d7235ce04c23c7b
+  sha256: a13437bc7a90ab5df3c19eac44384de2a14370d0391586b5aa63a6478f9c2c53
 
 build:
-  number: 0
+  number: 1
   skip: True  # [osx]
+  binary_relocation: False
+  run_exports:
+    - {{ pin_subpackage('lima', max_pin='x.x') }}
 
 test:
   commands:
diff --git a/recipes/linearfold/0001-FIX-command-broken-with-symbolic-link.patch b/recipes/linearfold/0001-FIX-command-broken-with-symbolic-link.patch
index 3709632b08a68..2efbe34655620 100644
--- a/recipes/linearfold/0001-FIX-command-broken-with-symbolic-link.patch
+++ b/recipes/linearfold/0001-FIX-command-broken-with-symbolic-link.patch
@@ -1,25 +1,13 @@
-From bb95a8f98b874fb9061c5ee1b3178f4d40f96416 Mon Sep 17 00:00:00 2001
-From: Fabien Pertuy <Fabien.Pertuy@Sanofi.com>
-Date: Fri, 21 May 2021 09:23:34 +0000
-Subject: [PATCH] FIX command broken with symbolic link
-
----
- linearfold | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
 diff --git a/linearfold b/linearfold
-index f5541d2..2c86b63 100755
+index fca4a30..7e68544 100755
 --- a/linearfold
 +++ b/linearfold
-@@ -28,7 +28,7 @@ def main():
-     zuker_subopt = '1' if FLAGS.zuker else '0'
-     delta = str(FLAGS.delta)
+@@ -38,7 +38,7 @@ def main():
+         
+     dangles = str(FLAGS.dangles)    
  
 -    path = os.path.dirname(os.path.abspath(__file__))
 +    path = os.path.dirname(os.path.realpath(__file__))
-     cmd = ["%s/%s" % (path, ('bin/linearfold_v' if use_vienna else 'bin/linearfold_c')), beamsize, is_sharpturn, is_verbose, is_eval, is_constraints, zuker_subopt, delta]
+     cmd = ["%s/%s" % (path, ('bin/linearfold_v' if use_vienna else 'bin/linearfold_c')), beamsize, is_sharpturn, is_verbose, is_eval, is_constraints, zuker_subopt, delta, shape_file_path, is_fasta, dangles]
      subprocess.call(cmd, stdin=sys.stdin)
      
--- 
-2.30.2
-
diff --git a/recipes/linearfold/meta.yaml b/recipes/linearfold/meta.yaml
index 68bd8d83073a7..62e614174d93e 100644
--- a/recipes/linearfold/meta.yaml
+++ b/recipes/linearfold/meta.yaml
@@ -1,17 +1,20 @@
 {% set name = "LinearFold" %}
-{% set version = "1.0" %}
-{% set sha256 = "2ae56b5f183472c2de96782e770a91e57f82e0ab511dfc0d9d612aa4e6155f60" %}
+{% set git_sha1 = "c3ee9bd80c06c2fc39a7bb7ae5e77b9566227cac" %}
+{% set version = "1.0.1.dev20220829" %}
+{% set sha256 = "cad8b93ba961820ca3701a1d931944bd307b1d1f92d74e1b02d5bd34d4ffe998" %}
 
 package:
   name: {{ name | lower }}
   version: {{ version }}
 
 build:
-  number: 3
+  number: 0
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage(name | lower, max_pin="x.x.x") }}
 
 source:
-  url: https://github.com/{{ name }}/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  url: https://github.com/{{ name }}/{{ name }}/archive/{{ git_sha1 }}.tar.gz
   sha256: {{ sha256 }}
   patches:
     - 0001-FIX-command-broken-with-symbolic-link.patch
@@ -23,7 +26,7 @@ requirements:
 
   run:
     - python-gflags
-    - python=2.7
+    - python >=3,<4
 
 test:
   source_files:
diff --git a/recipes/linearpartition/0001-FIX-command-broken-with-symbolic-link.patch b/recipes/linearpartition/0001-FIX-command-broken-with-symbolic-link.patch
index 95a8be08c0583..53c9c754a9810 100644
--- a/recipes/linearpartition/0001-FIX-command-broken-with-symbolic-link.patch
+++ b/recipes/linearpartition/0001-FIX-command-broken-with-symbolic-link.patch
@@ -1,25 +1,13 @@
-From 7413bfa18dddf47924be0839df0147045db0d045 Mon Sep 17 00:00:00 2001
-From: Fabien Pertuy <Fabien.Pertuy@Sanofi.com>
-Date: Fri, 21 May 2021 10:39:10 +0000
-Subject: [PATCH] FIX command broken with symbolic link
-
----
- linearpartition | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
 diff --git a/linearpartition b/linearpartition
-index 6c9d877..9d8a5b6 100755
+index f6c2a4e..7b0fe1d 100755
 --- a/linearpartition
 +++ b/linearpartition
-@@ -87,7 +87,7 @@ def main():
-     #     if os.path.exists(ThreshKnot_output): os.remove(ThreshKnot_output)
- 
+@@ -80,7 +80,7 @@ def main():
+             print("Exit!\n");
+             exit();
  
 -    path = os.path.dirname(os.path.abspath(__file__))
 +    path = os.path.dirname(os.path.realpath(__file__))
-     cmd = ["%s/%s" % (path, ('bin/linearpartition_v' if use_vienna else 'bin/linearpartition_c')), beamsize, is_sharpturn, is_verbose, bpp_file, bpp_prefix, pf_only, bpp_cutoff, forest_file, mea, gamma, TK, threshold, ThreshKnot_prefix, MEA_prefix, MEA_bpseq]
+     cmd = ["%s/%s" % (path, ('bin/linearpartition_v' if use_vienna else 'bin/linearpartition_c')), beamsize, is_sharpturn, is_verbose, bpp_file, bpp_prefix, pf_only, bpp_cutoff, forest_file, mea, gamma, TK, threshold, ThreshKnot_prefix, MEA_prefix, MEA_bpseq, shape_file_path, is_fasta, dangles]
      subprocess.call(cmd, stdin=sys.stdin)
      
--- 
-2.30.2
-
diff --git a/recipes/linearpartition/meta.yaml b/recipes/linearpartition/meta.yaml
index eaa4d137d8ee7..7a42168cc778e 100644
--- a/recipes/linearpartition/meta.yaml
+++ b/recipes/linearpartition/meta.yaml
@@ -1,17 +1,20 @@
 {% set name = "LinearPartition" %}
-{% set version = "1.0" %}
-{% set sha256 = "4fdea96f7ffbd4804d9308ddb46db5f96d1abc4b7bd737725f9bedcae3c88178" %}
+{% set version = "1.0.1.dev20240123" %}
+{% set git_sha1 = "fa953f6323274eeadd92cc1f4e5535417f3fb821" %}
+{% set sha256 = "e93c6a26c246c2e0927592052516d6fb15e7e1e8a378f74474136ba85746be58" %}
 
 package:
   name: {{ name | lower }}
   version: {{ version }}
 
 build:
-  number: 3
+  number: 0
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage(name | lower, max_pin="x.x.x") }}
 
 source:
-  url: https://github.com/LinearFold/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  url: https://github.com/LinearFold/{{ name }}/archive/{{ git_sha1 }}.tar.gz
   sha256: {{ sha256 }}
   patches:
     - 0001-FIX-command-broken-with-symbolic-link.patch
@@ -25,7 +28,7 @@ requirements:
     - matplotlib-base
     - numpy
     - pandas
-    - python=2.7
+    - python >=3,<4
     - python-gflags
     - seaborn
 
@@ -41,3 +44,4 @@ about:
   license: custom
   license_file: LICENSE
   summary: 'Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities'
+
diff --git a/recipes/liqa/meta.yaml b/recipes/liqa/meta.yaml
new file mode 100644
index 0000000000000..d7514f6f116c0
--- /dev/null
+++ b/recipes/liqa/meta.yaml
@@ -0,0 +1,51 @@
+{% set name = "liqa" %}
+{% set version = "1.3.4" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/liqa-{{ version }}.tar.gz
+  sha256: f8b2e6f0226d99f513d17be3758e6b3e2e9b7b40579f840d28737e827358850e
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - liqa=liqa_src.liqa:main
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation --no-cache-dir
+  run_exports:
+    - {{ pin_subpackage('liqa', max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3
+    - pip
+  run:
+    - python >=3
+    - lifelines
+    - numpy
+    - pysam
+    - scipy
+    - r-base
+    - r-betareg
+
+test:
+  imports:
+    - liqa_src
+  commands:
+    - liqa --help
+
+about:
+  home: "https://github.com/WGLab/LIQA"
+  summary: "A statistical tool to quantify isoform-specific expression using long-read RNA-seq."
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  dev_url: "https://github.com/WGLab/LIQA"
+  doc_url: "https://github.com/WGLab/LIQA/blob/master/doc/Usage.md"
+
+extra:
+  identifiers:
+    - doi:10.1186/s13059-021-02399-8
diff --git a/recipes/lisa2/meta.yaml b/recipes/lisa2/meta.yaml
index 66c3b7fd52663..20859b72ef139 100644
--- a/recipes/lisa2/meta.yaml
+++ b/recipes/lisa2/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "lisa2" %}
-{% set version = "2.3.0" %}
+{% set version = "2.3.2" %}
 
 package:
   name: {{ name|lower }}
@@ -7,12 +7,14 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/lisa2-{{ version }}.tar.gz
-  sha256: 95cec0ea2faadf3df384097ee3478f00b1d3d6bbe8cfe53187eeddfe6a221a50
+  sha256: dc9df3495322c94f93c12372fb8d88d355447f7b8b69ea639394fc6274e9affb
 
 build:
-  number: 0
+  number: 1
   noarch: python
   script: {{ PYTHON }} -m pip install . -vv
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   host:
@@ -20,10 +22,10 @@ requirements:
     - python >=3.5
   run:
     - h5py >=2
-    - numpy <2,>=1.17
+    - numpy >=1.17,<2
     - python >=3.5
-    - scikit-learn <1,>=0.22
-    - scipy <2,>=1.4
+    - scikit-learn >=0.22,<2
+    - scipy >=1.4,<2
 
 test:
   imports:
diff --git a/recipes/localhgt/build.sh b/recipes/localhgt/build.sh
new file mode 100644
index 0000000000000..a2d8631a97701
--- /dev/null
+++ b/recipes/localhgt/build.sh
@@ -0,0 +1,9 @@
+#!/bin/bash
+
+make 
+
+mkdir -p $PREFIX/bin
+
+cp $SRC_DIR/scripts/*py $PREFIX/bin
+cp $SRC_DIR/scripts/*sh $PREFIX/bin
+cp $SRC_DIR/scripts/extract_ref $PREFIX/bin
diff --git a/recipes/localhgt/meta.yaml b/recipes/localhgt/meta.yaml
new file mode 100644
index 0000000000000..94f06028c03df
--- /dev/null
+++ b/recipes/localhgt/meta.yaml
@@ -0,0 +1,53 @@
+{% set version = "1.0.1" %}
+
+package:
+  name: localhgt
+  version: {{ version }}
+
+build:
+  number: 2
+  run_exports:
+    - {{ pin_subpackage("localhgt", max_pin="x") }}
+  entry_points:
+    - localhgt = localhgt:main
+
+source:
+  url: https://github.com/deepomicslab/LocalHGT/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 4e1dca6c41f4f8519fd848d1d7fc3d290a62e4565bd12b27172846f1871ac4f8
+
+requirements:
+  build:
+    - make
+    - {{ compiler('cxx') }} 
+  host:
+  run:
+    - python >=3.7.12
+    - scikit-bio >=0.5.6 
+    - networkx >=2.6.3
+    - typing-extensions >=4.11.0
+    - pyfaidx
+    - pysam
+    - biopython
+    - scikit-learn
+    - scipy
+    - numpy <=1.24
+    - pandas
+    - samtools >=1.11
+    - seqkit >=2.6.1
+    - bwa >=0.7.17
+    - fastp >=0.23.2
+
+about:
+  home: https://github.com/deepomicslab/LocalHGT
+  license: MIT
+  summary: An ultrafast horizontal gene transfer detection method from large microbial communities
+
+test:
+  commands:
+    - localhgt --help
+
+extra:
+  identifiers:
+    - biotools:localhgt
+  recipe-maintainers:
+    - wshuai294
diff --git a/recipes/locarna/meta.yaml b/recipes/locarna/meta.yaml
index 6575d3c121e45..044f0c71cdf47 100644
--- a/recipes/locarna/meta.yaml
+++ b/recipes/locarna/meta.yaml
@@ -13,7 +13,9 @@ about:
   summary: Multiple alignment of RNAs
 
 build:
-  number: 1
+  number: 5
+  run_exports:
+    - {{ pin_subpackage('locarna', max_pin="x.x") }}
 
 source:
   url: "https://github.com/s-will/LocARNA/releases/download/v{{ version }}/locarna-{{ version }}.tar.gz"
@@ -27,19 +29,21 @@ requirements:
     - make
     - {{ compiler('cxx') }}
   host:
-    - viennarna =={{ vrnaversion }}
+    - viennarna >={{ vrnaversion }},<3
+    - perl
   run:
-    - viennarna =={{ vrnaversion }}
+    - viennarna >={{ vrnaversion }},<3
     - perl
 
 test:
   commands:
-    - mlocarna --version
-    - locarna --version
-    - locarna_p --version
-    - sparse --version
-    - exparna_p --version
-    - echo -e ">D10744\nGGAAAAUUGAUCAUCGGCAAGAUAAGUUAUUUACUAAAUAAUAGGAUUUAAUAACCUGGUGAGUUCGAAUCUCACAUUUUCCG" | locarna_rnafold_pp --in-loop --stacking --noLP -p0.5 |head -n3
+    - "ls -la"
+    - LC_ALL=en_US.UTF-8 mlocarna --version
+    - LC_ALL=en_US.UTF-8 locarna --version
+    - LC_ALL=en_US.UTF-8 locarna_p --version
+    - LC_ALL=en_US.UTF-8 sparse --version
+    - LC_ALL=en_US.UTF-8 exparna_p --version
+    - echo -e ">D10744\nGGAAAAUUGAUCAUCGGCAAGAUAAGUUAUUUACUAAAUAAUAGGAUUUAAUAACCUGGUGAGUUCGAAUCUCACAUUUUCCG" | LC_ALL=en_US.UTF-8 locarna_rnafold_pp --in-loop --stacking --noLP -p0.5 |head -n3
 
 extra:
   identifiers:
diff --git a/recipes/locidex/meta.yaml b/recipes/locidex/meta.yaml
new file mode 100644
index 0000000000000..213ecab088d71
--- /dev/null
+++ b/recipes/locidex/meta.yaml
@@ -0,0 +1,54 @@
+{% set name = "locidex" %}
+{% set version = "0.1.2" %}
+{% set sha256 = "00134512c81ce4d752ca568e2fc5c3497004be4b8a4458fa38e4195e5cfb72d0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/locidex-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+  
+
+build:
+  number: 0
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+  script: {{ PYTHON }} -m pip install . --use-pep517 --no-deps -vvv
+  entry_points:
+    - locidex=locidex.main:main
+
+requirements:
+  host:
+    - python >=3.8,<4
+    - pip
+  run:
+    - python >=3.8,<4
+    - {{ pin_compatible('numpy', max_pin="x") }}
+    - pandas >=2.0.2
+    - numba >=0.57.1
+    - pytables >=3.8
+    - six >=1.16
+    - pyrodigal >=3.0
+    - biopython >=1.83
+    - mafft
+    - blast >=2.9.0
+
+test: 
+  commands:
+    - locidex -h
+    - locidex search -h
+    - locidex extract  -h
+    - locidex report -h
+    - locidex merge -h
+    - locidex format -h
+    - locidex build  -h
+
+about:
+  home: 'https://pypi.org/project/locidex/'
+  summary: 'Locidex: Common search engine for similarity based typing applications'
+  license: Apache-2.0
+  dev_url: 'https://github.com/phac-nml/locidex'
+
diff --git a/recipes/locityper/build.sh b/recipes/locityper/build.sh
new file mode 100644
index 0000000000000..0698575530e7c
--- /dev/null
+++ b/recipes/locityper/build.sh
@@ -0,0 +1,15 @@
+#!/bin/bash -euo
+
+if [ "$(uname)" == "Darwin" ]; then
+    export HOME="/Users/distiller"
+    export HOME=`pwd`
+fi
+
+export C_INCLUDE_PATH="${PREFIX}/include"
+export LIBRARY_PATH="${PREFIX}/lib"
+
+git clone https://github.com/smarco/WFA2-lib WFA2
+
+# build statically linked binary with Rust
+RUST_BACKTRACE=1
+cargo install --no-track --verbose --root "${PREFIX}" --path .
diff --git a/recipes/locityper/meta.yaml b/recipes/locityper/meta.yaml
new file mode 100644
index 0000000000000..d21617ca45111
--- /dev/null
+++ b/recipes/locityper/meta.yaml
@@ -0,0 +1,45 @@
+{% set name = "locityper" %}
+{% set version = "0.15.3" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/tprodanov/locityper/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: bf123a391b08a6ab5bcb642f93af30bce021dffc82bcca37555c5657f209ceee
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("locityper", max_pin="x.x") }}
+
+requirements:
+  build:
+    - {{ compiler('rust') }}
+    - {{ compiler('cxx') }}
+    - cmake
+    - make
+  host:
+    - clangdev
+    - libgomp  # [linux]
+    - llvm-openmp  # [osx]
+  run:
+    - python
+    - samtools >=1.18
+    - kmer-jellyfish >=1.0
+    - minimap2 >=2.25
+    - strobealign >=0.12
+    - pysam
+
+test:
+  commands:
+    - locityper version
+
+about:
+  summary: "Targeted genotyper for complex polymorphic loci from short and long read WGS."
+  home: "https://github.com/tprodanov/locityper"
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  dev_url: "https://github.com/tprodanov/locityper"
diff --git a/recipes/lofreq/build.sh b/recipes/lofreq/build.sh
index 14aa9cefba636..d349a75b80adb 100644
--- a/recipes/lofreq/build.sh
+++ b/recipes/lofreq/build.sh
@@ -2,5 +2,5 @@
 set -eu -o pipefail
 
 ./configure --with-htslib=system --prefix=${PREFIX}
-make
+make -j ${CPU_COUNT}
 make install
diff --git a/recipes/lofreq/meta.yaml b/recipes/lofreq/meta.yaml
index 8599a1283fd08..0f18251ee95d3 100644
--- a/recipes/lofreq/meta.yaml
+++ b/recipes/lofreq/meta.yaml
@@ -9,7 +9,9 @@ source:
   sha256: 43028af07faa23c7ec0e167855492ae7bd31c4e7f8158114e51ec12aba5fd184
 
 build:
-  number: 10
+  number: 11
+  run_exports:
+    - {{ pin_subpackage('lofreq', max_pin='x') }}
 
 requirements:
   build:
@@ -34,5 +36,7 @@ about:
   summary: A fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - usegalaxy-eu:lofreq_call
diff --git a/recipes/lollipop/meta.yaml b/recipes/lollipop/meta.yaml
index 89f213a8aeaa8..5680df67393eb 100644
--- a/recipes/lollipop/meta.yaml
+++ b/recipes/lollipop/meta.yaml
@@ -12,7 +12,9 @@ source:
 
 build:
   noarch: python
-  number: 0
+  number: 1
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x.x") }}
   script:
     - {{ PYTHON }} -m pip install '.[cli]' --ignore-installed --no-deps -v
     - mkdir -p ${PREFIX}/share/{{ name }}/presets
@@ -30,7 +32,8 @@ requirements:
     - scipy
     - pandas
     - zstandard
-    - ruamel.yaml
+    # NOTE: change of API between ruamel.yaml 0.17.x and 0.18
+    - ruamel.yaml <0.18
     - strictyaml
     - tqdm
     - click
diff --git a/recipes/longreadsum/meta.yaml b/recipes/longreadsum/meta.yaml
index 9f8560e9bab14..904211f5314b5 100644
--- a/recipes/longreadsum/meta.yaml
+++ b/recipes/longreadsum/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "1.3.0" %}
-{% set sha256 = "9b1cf814f696364b630b014ede41f675de0c6881c5600788e381c1f43a81842e" %}
+{% set version = "1.3.1" %}
+{% set sha256 = "eb4c7677d43d80d19ddbac11900ae3a14efd6f2a3c4cc8bbc08e063a81e0e1df" %}
 
 package:
   name: longreadsum
@@ -10,10 +10,12 @@ source:
   sha256: '{{ sha256 }}'
 
 build:
-  number: 1
+  number: 0
   skip: true  # [py2k]
   entry_points:
     - longreadsum = entry_point:main
+  run_exports:
+    - {{ pin_subpackage('longreadsum', max_pin="x") }}
 
 requirements:
   build:
@@ -32,8 +34,9 @@ requirements:
     - plotly
 
 test:
-    commands:
-        - longreadsum --help
+  commands:
+    - longreadsum --help
+
 about:
   home: https://github.com/WGLab/LongReadSum
   license: MIT
diff --git a/recipes/longshot/build.sh b/recipes/longshot/build.sh
index 86b3387a1a49e..f7112e78ae4b7 100644
--- a/recipes/longshot/build.sh
+++ b/recipes/longshot/build.sh
@@ -1,19 +1,11 @@
 #!/bin/bash
 set -ex
 
-# this build script is taken from the rust-bio-tools recipe
-# https://github.com/bioconda/bioconda-recipes/blob/master/recipes/rust-bio-tools/build.sh
-
-# taken from yacrd recipe, see: https://github.com/bioconda/bioconda-recipes/blob/2b02c3db6400499d910bc5f297d23cb20c9db4f8/recipes/yacrd/build.sh
-#if [ "$(uname)" == "Darwin" ]; then
-#    # apparently the HOME variable isn't set correctly, and circle ci output indicates the following as the home directory
-#    #export HOME="/Users/distiller"
-#    export HOME="/Users/runner"
-#    # according to https://github.com/rust-lang/cargo/issues/2422#issuecomment-198458960 removing circle ci default configuration solves cargo trouble downloading crates
-#    git config --global --unset url.ssh://git@github.com.insteadOf
-#fi
+# Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
+# We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
+export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="${BUILD_PREFIX}/.cargo"
 
 # build statically linked binary with Rust
-export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="$(pwd)/.cargo"
-export LD=$CC
-C_INCLUDE_PATH=$PREFIX/include LIBRARY_PATH=$PREFIX/lib cargo install --path . --root $PREFIX
+export LD="${CC}" C_INCLUDE_PATH="${PREFIX}/include" LIBRARY_PATH="${PREFIX}/lib"
+RUST_BACKTRACE=1
+cargo install --path . --root "${PREFIX}" --verbose
diff --git a/recipes/longshot/meta.yaml b/recipes/longshot/meta.yaml
index ca77b08ec44aa..10c98313b10f1 100644
--- a/recipes/longshot/meta.yaml
+++ b/recipes/longshot/meta.yaml
@@ -1,26 +1,31 @@
-{% set version = "0.4.5" %}
+{% set name = "longshot" %}
+{% set version = "1.0.0" %}
 
 package:
-  name: longshot
-  version: {{version}}
-
-build:
-  number: 2
-  skip: True  # [osx]
+  name: {{ name }}
+  version: {{ version }}
 
 source:
   url: https://github.com/pjedge/longshot/archive/v{{ version }}.tar.gz
-  sha256: 7c9f570e17012b2fee386892ae64daf5f104d59adeb59dc7e710b876c1a11cad
+  sha256: f6981892beb966eef40986c46928301dec1fef38591cc291e00a546f9866c5e2
+  patches:
+    - update-rust-htslib.patch
+
+build:
+  number: 1
+  skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage('longshot', max_pin="x") }}
 
 requirements:
   build:
-    - rust >=1.4
-    - make
+    - {{ compiler('rust') }}
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
     - pkg-config  # [osx]
     - clangdev
     - cmake
+    - make
   host:
     - zlib
     - xz
@@ -34,6 +39,14 @@ test:
 about:
   home: https://github.com/pjedge/longshot
   license: MIT
+  license_family: MIT
   license_file: LICENSE
-  summary: |
-    Diploid SNV caller for error-prone reads.
+  summary: "Diploid SNV caller for error-prone reads."
+  dev_url: https://github.com/pjedge/longshot
+
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - doi:10.1038/s41467-019-12493-y
+    - biotools:longshot
diff --git a/recipes/longshot/update-rust-htslib.patch b/recipes/longshot/update-rust-htslib.patch
new file mode 100644
index 0000000000000..1f2ec95d71d9f
--- /dev/null
+++ b/recipes/longshot/update-rust-htslib.patch
@@ -0,0 +1,23 @@
+From 9457f89b8200c238f4696eb86f7e979d23b3ae2c Mon Sep 17 00:00:00 2001
+From: Martin Grigorov <martin-g@users.noreply.github.com>
+Date: Thu, 25 Apr 2024 11:05:07 +0300
+Subject: [PATCH] Update rust-htslib to 0.46.0
+
+This allows building the project on Linux ARM64!
+---
+ Cargo.toml | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/Cargo.toml b/Cargo.toml
+index c8592eb..e3a32db 100644
+--- a/Cargo.toml
++++ b/Cargo.toml
+@@ -5,7 +5,7 @@ authors = ["Peter Edge <edge.peterj@gmail.com>"]
+ 
+ [dependencies]
+ bio = "0.25.0"
+-rust-htslib = "0.38.2"
++rust-htslib = "0.46.0"
+ clap = "2.26.2"
+ chrono = "0.4"
+ rand = { version = "0.8", features = ["std_rng"] }
diff --git a/recipes/longstitch/meta.yaml b/recipes/longstitch/meta.yaml
index e564fb1d255a6..b1545d1234015 100644
--- a/recipes/longstitch/meta.yaml
+++ b/recipes/longstitch/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.0.4" %}
+{% set version = "1.0.5" %}
 
 package:
   name: longstitch
@@ -6,11 +6,11 @@ package:
 
 source:
   url: https://github.com/bcgsc/LongStitch/releases/download/v{{ version }}/longstitch-{{ version }}.tar.gz
-  sha256: 956267e2e0a868329a8086f6cc9d0d2f5d45852737d0b34fbbf5ebc3f7b36ea3
+  sha256: 53b538d80906ebc5499fdf694ce3a10a801335a356c4c371318010914cecf88c
 
 build:
   noarch: generic
-  number: 1
+  number: 0
 
 requirements:
   run:
diff --git a/recipes/lorax/meta.yaml b/recipes/lorax/meta.yaml
index a07470d8a3370..904907ef97879 100644
--- a/recipes/lorax/meta.yaml
+++ b/recipes/lorax/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.3.7" %}
-{% set sha256 = "c4a69e876542d2d4f02ca9e0e724344376ed12577458ff4f696572119b5a0bd0" %}
+{% set version = "0.3.9" %}
+{% set sha256 = "f4fa1f92f75d53af696225a42c3b1ee689a78eee41c09040146da9692a34fd6f" %}
 
 package:
   name: lorax
@@ -10,7 +10,9 @@ source:
   sha256: '{{ sha256 }}'
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("lorax", max_pin="x.x") }}
 
 requirements:
   build:
@@ -37,3 +39,7 @@ about:
   license_family: BSD
   license_file: LICENSE
   summary: A long-read analysis toolbox for cancer genomics
+
+extra:
+  identifiers:
+    - doi:10.1016/j.xgen.2023.100281
diff --git a/recipes/lorikeet-genome/build.sh b/recipes/lorikeet-genome/build.sh
index d527f13682240..d7a50654b5c60 100644
--- a/recipes/lorikeet-genome/build.sh
+++ b/recipes/lorikeet-genome/build.sh
@@ -12,4 +12,4 @@ C_INCLUDE_PATH=$PREFIX/include \
 LIBRARY_PATH=$PREFIX/lib \
 LIBCLANG_PATH=$PREFIX/lib/libclang.so \
 OPENSSL_DIR=$PREFIX \
-cargo install --force --root $PREFIX
+cargo install --path ./ --force --root $PREFIX
diff --git a/recipes/lorikeet-genome/meta.yaml b/recipes/lorikeet-genome/meta.yaml
index cce4b74e27507..74cd2f2cb9905 100644
--- a/recipes/lorikeet-genome/meta.yaml
+++ b/recipes/lorikeet-genome/meta.yaml
@@ -1,62 +1,57 @@
-{% set version = "0.7.3" %}
-{% set name = "lorikeet" %}
-{% set sha256 = "663e53c2451e06af3334b612a7518180fa528e2d12ebe869f74f78996e2a82a5" %}
+{% set version = "0.8.2" %}
+{% set name = "lorikeet-genome" %}
+{% set sha256 = "125fb87f7aa586aa92183ed2c11721477d0b2ba2481f80a1e047ab581e3ff50b" %}
 
 package:
-  name: lorikeet-genome
+  name: {{ name }}
   version: {{ version }}
 
 build:
-  number: 2
+  number: 0
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 source:
-  url: https://github.com/rhysnewell/{{ name }}/archive/v{{ version }}.tar.gz
+  url: https://github.com/rhysnewell/lorikeet/archive/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
 
 requirements:
   build:
-    - rust >=1.40
-    - python >=3.9
+    - rust >=1.70
+    - python ==3.10
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
-    - perl
     - pkg-config
     - make
     - cmake
   host:
     - zlib
-    - gsl
+    - blis
     - libblas
+    - openblas
     - openssl
-    - htslib
+    - clangdev
   run:
-    - python >=3.9
-    - htslib
-    - parallel
-    - numpy
-    - matplotlib-base
+    - samtools >=1.9
+    - coreutils
+    - python ==3.10
     - prodigal
+    - minimap2 >=2.24
+    - bwa >=0.7.17
+    - bwa-mem2
+    - numpy
+    - scikit-allel >=1.3.6
     - svim
-    - samtools >=1.9
     - bcftools
-    - vt
-    - zlib
-    - gsl
-    - starcode
-    - bwa >=0.7.17
-    - bwa-mem2 >=2.2.1
-    - minimap2
-    - fastani
-    - dashing
-    - ngmlr
-    - scikit-allel
-    - polars
-    - scipy
+    - pip
+    - polars >=0.18
+    - scipy >=1.11
+    - cmake >=3.21
 
 test:
   commands:
-    - {{ name }} --version | grep '{{ version }}'
+    - lorikeet --version | grep '{{ version }}'
 
 about:
   home: https://github.com/rhysnewell/Lorikeet
diff --git a/recipes/lotus2/build.sh b/recipes/lotus2/build.sh
index bd60e65cb0fa8..5b4edbec842fd 100644
--- a/recipes/lotus2/build.sh
+++ b/recipes/lotus2/build.sh
@@ -4,10 +4,10 @@ SHARE_DIR=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
 rm -rf bin/installs/ bin/LCA bin/rtk bin/sdm bin/vsearch configs/sdm_src/
 # Configure LotuS2
 cp configs/LotuS.cfg.def lOTUs.cfg
-for binary in blastn clustalo lambda LCA mafft minimap2 rtk sdm swarm vsearch; do
+for binary in blastn clustalo lambda3 LCA mafft minimap2 rtk sdm swarm vsearch; do
     sed -i.bak -e "s|^$binary[[:space:]].*|$binary $PREFIX/bin/$binary|" lOTUs.cfg
 done
-for binary in cd-hit fasttree hmmsearch iqtree itsx lambda_index makeBlastDB RDPjar; do
+for binary in cd-hit fasttree hmmsearch iqtree itsx makeBlastDB RDPjar; do
     sed -i.bak -e "s|^$binary[[:space:]]\(.*\)|$binary $PREFIX/bin/\1|" lOTUs.cfg
 done
 # Install
diff --git a/recipes/lotus2/meta.yaml b/recipes/lotus2/meta.yaml
index b6255de32aeda..0856d2ca4d10a 100644
--- a/recipes/lotus2/meta.yaml
+++ b/recipes/lotus2/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "lotus2" %}
-{% set version = "2.25" %}
-{% set sha256 = "11a158691b1973c0aa100dbc836544bbda19489cec6bf36fee31b05c94449488" %}
+{% set version = "2.32" %}
+{% set sha256 = "5c1c4e6e0cb6cd7277be6a163d184ea4dd30eac3b03b171deede8ce85509fb4e" %}
 
 package:
   name: {{ name }}
@@ -11,8 +11,10 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 0
+  number: 1
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   run:
@@ -23,19 +25,21 @@ requirements:
     - cd-hit
     - clustalo
     - fasttree
+    - hmmer >=3.1
     - infernal
     - iqtree
     - itsx
-    - lambda <2
-    - lca >=0.23
+    - lambda >=3,<4
+    - lca >=0.25
     - mafft
     - minimap2
     - perl
     - perl-getopt-long
+    - pigz
     - r-dplyr
     - rdp_classifier
     - rtk
-    - sdm ==2.06
+    - sdm ==2.17
     - swarm
     - unzip
     - vsearch
@@ -52,3 +56,10 @@ about:
   license: GPL-3.0-or-later
   license_file: COPYING
   summary: LotuS2 is a lightweight complete 16S/18S/ITS pipeline
+
+extra:
+  identifiers:
+    - doi:10.1186/s40168-022-01365-1
+    - biotools:lotus2
+  recipe-maintainers:
+    - nsoranzo
diff --git a/recipes/lotus2/post-link.sh b/recipes/lotus2/post-link.sh
index 1534333dbc0a8..5440f65b10393 100644
--- a/recipes/lotus2/post-link.sh
+++ b/recipes/lotus2/post-link.sh
@@ -1,9 +1,19 @@
 #!/bin/sh
 TARGET=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
 
+if [ -f /.dockerenv ]; then
+    cat >> "$PREFIX/.messages.txt" <<EOF
+To install the databases needed by LotuS2, execute:
+
 cd "$TARGET/"
 perl autoInstall.pl -condaDBinstall
 
+EOF
+else
+    cd "$TARGET/"
+    perl autoInstall.pl -condaDBinstall
+fi
+
 cat >> "$PREFIX/.messages.txt" <<EOF
 Due to licence restrictions, if you would like to use usearch for OTU clustering
 (uparse, unoise) and mapping, you need to download and install it from
diff --git a/recipes/lrsim/0002-use-CXX-and-CC.patch b/recipes/lrsim/0002-use-CXX-and-CC.patch
new file mode 100644
index 0000000000000..9cab56053c9b4
--- /dev/null
+++ b/recipes/lrsim/0002-use-CXX-and-CC.patch
@@ -0,0 +1,167 @@
+From 406353bf60a7306bc33412a2baa3325ec6a5ef45 Mon Sep 17 00:00:00 2001
+From: Ilya Shlyakhter <ilya_shl@alum.mit.edu>
+Date: Thu, 30 Nov 2023 15:49:26 -0500
+Subject: [PATCH 2/2] use CXX and CC
+
+---
+ DWGSIMSrc/Makefile                        | 2 --
+ DWGSIMSrc/samtools/Makefile               | 2 --
+ DWGSIMSrc/samtools/bcftools/Makefile      | 2 --
+ DWGSIMSrc/samtools/misc/Makefile          | 4 ----
+ SURVIVORSrc/Debug/makefile                | 2 +-
+ SURVIVORSrc/Debug/src/convert/subdir.mk   | 2 +-
+ SURVIVORSrc/Debug/src/merge_vcf/subdir.mk | 2 +-
+ SURVIVORSrc/Debug/src/simulator/subdir.mk | 2 +-
+ SURVIVORSrc/Debug/src/subdir.mk           | 2 +-
+ SURVIVORSrc/Debug/src/vcfs/subdir.mk      | 2 +-
+ make.sh                                   | 4 ++--
+ 11 files changed, 8 insertions(+), 18 deletions(-)
+
+diff --git a/DWGSIMSrc/Makefile b/DWGSIMSrc/Makefile
+index 0d5b9ec..bbb7047 100644
+--- a/DWGSIMSrc/Makefile
++++ b/DWGSIMSrc/Makefile
+@@ -1,6 +1,4 @@
+ PACKAGE_VERSION="0.1.11"
+-CC=			gcc
+-CFLAGS=		-g -Wall -O3 #-m64 #-arch ppc
+ DFLAGS=		-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\\\"${PACKAGE_VERSION}\\\"
+ DWGSIM_AOBJS = src/dwgsim_opt.o src/mut.o src/contigs.o src/regions_bed.o \
+ 			   src/mut_txt.o src/mut_bed.o src/mut_vcf.o src/mut_input.o src/dwgsim.o
+diff --git a/DWGSIMSrc/samtools/Makefile b/DWGSIMSrc/samtools/Makefile
+index a584c7a..37d5345 100644
+--- a/DWGSIMSrc/samtools/Makefile
++++ b/DWGSIMSrc/samtools/Makefile
+@@ -4,8 +4,6 @@
+ #   make git-stamp
+ VERSION=
+ 
+-CC=			gcc
+-CFLAGS=		-g -Wall $(VERSION) -O2
+ #LDFLAGS=		-Wl,-rpath,\$$ORIGIN/../lib
+ DFLAGS=		-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1
+ KNETFILE_O=	knetfile.o
+diff --git a/DWGSIMSrc/samtools/bcftools/Makefile b/DWGSIMSrc/samtools/bcftools/Makefile
+index be831de..df67d1d 100644
+--- a/DWGSIMSrc/samtools/bcftools/Makefile
++++ b/DWGSIMSrc/samtools/bcftools/Makefile
+@@ -1,5 +1,3 @@
+-CC=			gcc
+-CFLAGS=		-g -Wall -O2 #-m64 #-arch ppc
+ DFLAGS=		-D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE
+ LOBJS=		bcf.o vcf.o bcfutils.o prob1.o em.o kfunc.o kmin.o index.o fet.o mut.o bcf2qcall.o
+ OMISC=		..
+diff --git a/DWGSIMSrc/samtools/misc/Makefile b/DWGSIMSrc/samtools/misc/Makefile
+index d36e7ac..388bfb7 100644
+--- a/DWGSIMSrc/samtools/misc/Makefile
++++ b/DWGSIMSrc/samtools/misc/Makefile
+@@ -1,7 +1,3 @@
+-CC=			gcc
+-CXX=		g++
+-CFLAGS=		-g -Wall -O2 #-m64 #-arch ppc
+-CXXFLAGS=	$(CFLAGS)
+ DFLAGS=		-D_FILE_OFFSET_BITS=64
+ OBJS=		
+ PROG=		md5sum-lite md5fa maq2sam-short maq2sam-long ace2sam wgsim bamcheck
+diff --git a/SURVIVORSrc/Debug/makefile b/SURVIVORSrc/Debug/makefile
+index fb44537..e1fdd42 100644
+--- a/SURVIVORSrc/Debug/makefile
++++ b/SURVIVORSrc/Debug/makefile
+@@ -48,7 +48,7 @@ all: SURVIVOR
+ SURVIVOR: $(OBJS) $(USER_OBJS)
+ 	@echo 'Building target: $@'
+ 	@echo 'Invoking: Cross G++ Linker'
+-	g++  -o "SURVIVOR" $(OBJS) $(USER_OBJS) $(LIBS)
++	${CXX} ${CXXFLAGS}  -o "SURVIVOR" $(OBJS) $(USER_OBJS) $(LIBS)
+ 	@echo 'Finished building target: $@'
+ 	@echo ' '
+ 
+diff --git a/SURVIVORSrc/Debug/src/convert/subdir.mk b/SURVIVORSrc/Debug/src/convert/subdir.mk
+index b4e47c9..dccb68f 100644
+--- a/SURVIVORSrc/Debug/src/convert/subdir.mk
++++ b/SURVIVORSrc/Debug/src/convert/subdir.mk
+@@ -35,7 +35,7 @@ CPP_DEPS += \
+ src/convert/%.o: ../src/convert/%.cpp
+ 	@echo 'Building file: $<'
+ 	@echo 'Invoking: Cross G++ Compiler'
+-	g++ -O3 -g3 -Wall -c -fmessage-length=0 -MMD -MP -MF"$(@:%.o=%.d)" -MT"$(@:%.o=%.d)" -o "$@" "$<"
++	${CXX} ${CXXFLAGS} -O3 -g3 -Wall -c -fmessage-length=0 -MMD -MP -MF"$(@:%.o=%.d)" -MT"$(@:%.o=%.d)" -o "$@" "$<"
+ 	@echo 'Finished building: $<'
+ 	@echo ' '
+ 
+diff --git a/SURVIVORSrc/Debug/src/merge_vcf/subdir.mk b/SURVIVORSrc/Debug/src/merge_vcf/subdir.mk
+index f4d793d..fd27596 100644
+--- a/SURVIVORSrc/Debug/src/merge_vcf/subdir.mk
++++ b/SURVIVORSrc/Debug/src/merge_vcf/subdir.mk
+@@ -20,7 +20,7 @@ CPP_DEPS += \
+ src/merge_vcf/%.o: ../src/merge_vcf/%.cpp
+ 	@echo 'Building file: $<'
+ 	@echo 'Invoking: Cross G++ Compiler'
+-	g++ -O3 -g3 -Wall -c -fmessage-length=0 -MMD -MP -MF"$(@:%.o=%.d)" -MT"$(@:%.o=%.d)" -o "$@" "$<"
++	${CXX} ${CXXFLAGS} -O3 -g3 -Wall -c -fmessage-length=0 -MMD -MP -MF"$(@:%.o=%.d)" -MT"$(@:%.o=%.d)" -o "$@" "$<"
+ 	@echo 'Finished building: $<'
+ 	@echo ' '
+ 
+diff --git a/SURVIVORSrc/Debug/src/simulator/subdir.mk b/SURVIVORSrc/Debug/src/simulator/subdir.mk
+index 8ffd9ec..7f15f88 100644
+--- a/SURVIVORSrc/Debug/src/simulator/subdir.mk
++++ b/SURVIVORSrc/Debug/src/simulator/subdir.mk
+@@ -23,7 +23,7 @@ CPP_DEPS += \
+ src/simulator/%.o: ../src/simulator/%.cpp
+ 	@echo 'Building file: $<'
+ 	@echo 'Invoking: Cross G++ Compiler'
+-	g++ -O3 -g3 -Wall -c -fmessage-length=0 -MMD -MP -MF"$(@:%.o=%.d)" -MT"$(@:%.o=%.d)" -o "$@" "$<"
++	${CXX} ${CXXFLAGS} -O3 -g3 -Wall -c -fmessage-length=0 -MMD -MP -MF"$(@:%.o=%.d)" -MT"$(@:%.o=%.d)" -o "$@" "$<"
+ 	@echo 'Finished building: $<'
+ 	@echo ' '
+ 
+diff --git a/SURVIVORSrc/Debug/src/subdir.mk b/SURVIVORSrc/Debug/src/subdir.mk
+index 24863c4..5a4bdf2 100644
+--- a/SURVIVORSrc/Debug/src/subdir.mk
++++ b/SURVIVORSrc/Debug/src/subdir.mk
+@@ -29,7 +29,7 @@ CPP_DEPS += \
+ src/%.o: ../src/%.cpp
+ 	@echo 'Building file: $<'
+ 	@echo 'Invoking: Cross G++ Compiler'
+-	g++ -O3 -g3 -Wall -c -fmessage-length=0 -MMD -MP -MF"$(@:%.o=%.d)" -MT"$(@:%.o=%.d)" -o "$@" "$<"
++	${CXX} ${CXXFLAGS} -O3 -g3 -Wall -c -fmessage-length=0 -MMD -MP -MF"$(@:%.o=%.d)" -MT"$(@:%.o=%.d)" -o "$@" "$<"
+ 	@echo 'Finished building: $<'
+ 	@echo ' '
+ 
+diff --git a/SURVIVORSrc/Debug/src/vcfs/subdir.mk b/SURVIVORSrc/Debug/src/vcfs/subdir.mk
+index 6d434f7..d76422f 100644
+--- a/SURVIVORSrc/Debug/src/vcfs/subdir.mk
++++ b/SURVIVORSrc/Debug/src/vcfs/subdir.mk
+@@ -29,7 +29,7 @@ CPP_DEPS += \
+ src/vcfs/%.o: ../src/vcfs/%.cpp
+ 	@echo 'Building file: $<'
+ 	@echo 'Invoking: Cross G++ Compiler'
+-	g++ -O3 -g3 -Wall -c -fmessage-length=0 -MMD -MP -MF"$(@:%.o=%.d)" -MT"$(@:%.o=%.d)" -o "$@" "$<"
++	${CXX} -O3 -g3 -Wall -c -fmessage-length=0 -MMD -MP -MF"$(@:%.o=%.d)" -MT"$(@:%.o=%.d)" -o "$@" "$<"
+ 	@echo 'Finished building: $<'
+ 	@echo ' '
+ 
+diff --git a/make.sh b/make.sh
+index eff30bb..186da1f 100755
+--- a/make.sh
++++ b/make.sh
+@@ -1,6 +1,6 @@
+ set -e
+ 
+-g++ extractReads.cpp -O3 -o extractReads
++${CXX} extractReads.cpp -O3 -o extractReads
+ 
+ cd DWGSIMSrc
+ make -j
+@@ -9,7 +9,7 @@ cp -f ./samtools/samtools ../
+ cd ../
+ 
+ cd msortSrc
+-g++ msort.c sort_funs.c stdhashc.cc -lm -m64 -fpermissive -o msort
++${CXX} msort.c sort_funs.c stdhashc.cc -lm -m64 -fpermissive -o msort
+ cp -f msort ../
+ cd ../
+ 
+-- 
+2.43.0
+
diff --git a/recipes/lrsim/0003-use-ncurses.patch b/recipes/lrsim/0003-use-ncurses.patch
new file mode 100644
index 0000000000000..514d891af8edc
--- /dev/null
+++ b/recipes/lrsim/0003-use-ncurses.patch
@@ -0,0 +1,25 @@
+From 76b05cabbfda30cfcc81f07081cc1a091127b393 Mon Sep 17 00:00:00 2001
+From: Ilya Shlyakhter <ilya_shl@alum.mit.edu>
+Date: Thu, 30 Nov 2023 16:34:22 -0500
+Subject: [PATCH 3/3] use ncurses
+
+---
+ DWGSIMSrc/samtools/Makefile | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/DWGSIMSrc/samtools/Makefile b/DWGSIMSrc/samtools/Makefile
+index 37d5345..5143709 100644
+--- a/DWGSIMSrc/samtools/Makefile
++++ b/DWGSIMSrc/samtools/Makefile
+@@ -19,7 +19,7 @@ PROG=		samtools
+ INCLUDES=	-I.
+ SUBDIRS=	. bcftools misc
+ LIBPATH=
+-LIBCURSES=	-lcurses # -lXCurses
++LIBCURSES=	-lncurses # -lXCurses
+ 
+ 
+ .SUFFIXES:.c .o
+-- 
+2.43.0
+
diff --git a/recipes/lrsim/0004-add-LDFLAGS.patch b/recipes/lrsim/0004-add-LDFLAGS.patch
new file mode 100644
index 0000000000000..557fc7f2ce861
--- /dev/null
+++ b/recipes/lrsim/0004-add-LDFLAGS.patch
@@ -0,0 +1,29 @@
+From 3de5f1769e5fca938ef0479bf0f7a670ad737540 Mon Sep 17 00:00:00 2001
+From: Ilya Shlyakhter <ilya_shl@alum.mit.edu>
+Date: Thu, 30 Nov 2023 17:16:53 -0500
+Subject: [PATCH 4/4] add LDFLAGS
+
+---
+ DWGSIMSrc/Makefile | 4 ++--
+ 1 file changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/DWGSIMSrc/Makefile b/DWGSIMSrc/Makefile
+index bbb7047..3aea51f 100644
+--- a/DWGSIMSrc/Makefile
++++ b/DWGSIMSrc/Makefile
+@@ -35,10 +35,10 @@ all:$(PROG)
+ .PHONY:all-recur lib-recur clean-recur cleanlocal-recur install-recur
+ 
+ dwgsim:lib-recur $(DWGSIM_AOBJS)
+-	$(CC) $(CFLAGS) -o $@ $(DWGSIM_AOBJS) -lm -lz -lpthread
++	$(CC) $(CFLAGS) -o $@ $(DWGSIM_AOBJS) $(LDFLAGS) -lm -lz -lpthread
+ 
+ dwgsim_eval:lib-recur $(DWGSIM_EVAL_AOBJS)
+-	$(CC) $(CFLAGS) -o $@ $(DWGSIM_EVAL_AOBJS) -Lsamtools -lm -lz -lpthread
++	$(CC) $(CFLAGS) -o $@ $(DWGSIM_EVAL_AOBJS) $(LDFLAGS) -Lsamtools -lm -lz -lpthread
+ 
+ cleanlocal:
+ 		rm -vfr gmon.out *.o a.out *.exe *.dSYM razip bgzip $(PROG) *~ *.a *.so.* *.so *.dylib; \
+-- 
+2.43.0
+
diff --git a/recipes/lrsim/0005-fix-perl-loc.patch b/recipes/lrsim/0005-fix-perl-loc.patch
new file mode 100644
index 0000000000000..1450fafc8b8bb
--- /dev/null
+++ b/recipes/lrsim/0005-fix-perl-loc.patch
@@ -0,0 +1,33 @@
+From ba85d6222226cc95ff0bbcc33d29806467e3d774 Mon Sep 17 00:00:00 2001
+From: Ilya Shlyakhter <ilya_shl@alum.mit.edu>
+Date: Thu, 30 Nov 2023 21:28:16 -0500
+Subject: [PATCH 5/5] fix perl loc
+
+---
+ faFilter.pl            | 2 +-
+ simulateLinkedReads.pl | 2 +-
+ 2 files changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/faFilter.pl b/faFilter.pl
+index d1faa2f..7c11208 100755
+--- a/faFilter.pl
++++ b/faFilter.pl
+@@ -1,4 +1,4 @@
+-#!/usr/bin/perl
++#!/usr/bin/env perl
+ 
+ use strict;
+ use warnings;
+diff --git a/simulateLinkedReads.pl b/simulateLinkedReads.pl
+index 302748a..bb8a0c0 100755
+--- a/simulateLinkedReads.pl
++++ b/simulateLinkedReads.pl
+@@ -1,4 +1,4 @@
+-#!/usr/bin/perl
++#!/usr/bin/env perl
+ 
+ # The MIT License (MIT)
+ # Copyright (c) 2016 Ruibang Luo <aquaskyline@gmail.com>
+-- 
+2.43.0
+
diff --git a/recipes/lrsim/build.sh b/recipes/lrsim/build.sh
new file mode 100755
index 0000000000000..9d83fb7218ba2
--- /dev/null
+++ b/recipes/lrsim/build.sh
@@ -0,0 +1,38 @@
+#!/bin/bash
+
+set -eux -o pipefail
+
+rm -f DWGSIMSrc/samtools/bcftools/*.[oa]
+bash make.sh
+
+mkdir -p $PREFIX/share/lrsim
+for LRSIM_PROG in simulateLinkedReads.pl dwgsim SURVIVOR msort extractReads samtools faFilter.pl
+do
+    cp ${LRSIM_PROG} $PREFIX/share/lrsim/
+    chmod u+x $PREFIX/share/lrsim/${LRSIM_PROG}
+done
+cp 4M-with-alts-february-2016.txt $PREFIX/share/lrsim/
+#cp simulateLinkedReads.pl_*.so $PREFIX/share/lrsim/
+#cp simulateLinkedReads.pl_*.inl $PREFIX/share/lrsim/
+
+mkdir -p $PREFIX/share/lrsim/_Inline
+export PERL_INLINE_DIRECTORY=$PREFIX/share/lrsim/_Inline
+
+mkdir -p $PREFIX/bin 
+echo "#! /usr/bin/env bash" >> $PREFIX/bin/lrsim
+echo "set -eux -o pipefail" >> $PREFIX/bin/lrsim
+echo "export PERL_INLINE_DIRECTORY=$PREFIX/share/lrsim/_Inline"
+echo "perl $PREFIX/share/lrsim/simulateLinkedReads.pl \"\$@\"" >> $PREFIX/bin/lrsim
+chmod +x $PREFIX/bin/lrsim
+
+cat $PREFIX/bin/lrsim
+./lrsim || true
+
+# Run the test to ensure that perl-inline-c compile the C code
+# snippets and stores the compiled results under $PREFIX/share/lrsim/_Inline
+pushd test
+bash -x test.sh
+popd
+
+chmod -R u+w $PREFIX/share/lrsim/_Inline
+bash -x clean.sh
diff --git a/recipes/lrsim/meta.yaml b/recipes/lrsim/meta.yaml
new file mode 100644
index 0000000000000..eb97739dad760
--- /dev/null
+++ b/recipes/lrsim/meta.yaml
@@ -0,0 +1,68 @@
+{% set name = "LRSIM" %}
+{% set version = "1.0" %}
+{% set sha256 = "89623fba2ce624da4e2c8ce8a99b1a46eb3bc03a8c38044c64f4b8a0d0d9721e" %}
+
+package:
+  name: {{ name | lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/aquaskyline/{{ name }}/archive/refs/tags/{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+  patches:
+    - 0002-use-CXX-and-CC.patch
+    - 0003-use-ncurses.patch
+    - 0004-add-LDFLAGS.patch
+    - 0005-fix-perl-loc.patch
+
+build:
+  number: 0
+  skip: True  # [not linux]
+  run_exports:
+    - {{ pin_subpackage(name | lower, max_pin="x") }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - autoconf
+    - automake
+    - perl
+    - perl-inline
+    - perl-inline-c
+    - perl-math-random
+  host:
+    - gsl
+    - htslib
+    - ncurses
+    - perl
+    - perl-inline
+    - perl-inline-c
+    - perl-math-random
+    - pthread-stubs
+    - zlib
+  run:
+    - perl
+    - perl-inline
+    - perl-inline-c
+    - perl-math-random
+
+test:
+  commands:
+    - "lrsim 2>&1 | grep 'Usage'"
+    - "lrsim 2>&1 | grep 'simulateLinkedReads.pl'"
+
+about:
+  home: https://github.com/aquaskyline/{{ name }}
+  license: MIT
+  license_file: LICENSE
+  summary: "Simulator for 10X Genomics Linked Reads"
+
+extra:
+  recipe-maintainers:
+    - notestaff
+    - aquaskyline
+  identifiers:
+    - doi:10.1016/j.csbj.2017.10.002
+    - doi:10.5281/zenodo.808913
diff --git a/recipes/lrtk/meta.yaml b/recipes/lrtk/meta.yaml
index 90ba489f9ef4b..6d58dfc4f58d2 100644
--- a/recipes/lrtk/meta.yaml
+++ b/recipes/lrtk/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.5" %}
+{% set version = "2.0" %}
 
 package:
   name: lrtk
@@ -8,10 +8,12 @@ build:
   noarch: python
   number: 0
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed "
+  run_exports:
+    - lrtk
 
 source:
-  url: https://github.com/ericcombiolab/LRTK/archive/v1.5.tar.gz
-  sha256: c9d7ea85de5e582190356b257e5d97d58083eba8f8713197a321047a02df4eee
+  url: https://github.com/ericcombiolab/LRTK/archive/refs/tags/v2.0.tar.gz
+  sha256: ba256b4b7a580fed18ebf457ebdc0963e40f63a60395f8577597cdd0c14de01d
 
 requirements:
   host:
@@ -21,16 +23,28 @@ requirements:
   run:
     - aquila
     - bcftools
+    - bedtools
     - bwa
+    - bowtie2
     - fastp
     - freebayes
     - gatk
     - hapcut2
+    - megahit
+    - metabat2
     - parallel
     - picard
-    - samtools
-    - whatshap
+    - r-ade4
+    - r-base
+    - r-clusterSim
+    - r-factoextra
+    - r-ggforce
+    - r-ggplot2
+    - r-proxy
+    - r-vegan
     - vcflib
+    - vcftools
+    - tabix
 
 test:
   commands:
@@ -39,5 +53,7 @@ test:
 about:
   home: https://github.com/ericcombiolab/LRTK
   license: MIT
-  summary: This is a unified and versatile toolkit for analyzing Linked-Read sequencing data.
+  summary: This is a unified and versatile ToolKit for analyzing Linked-Read sequencing data.
+
+
 
diff --git a/recipes/ltr_finder_parallel/build.sh b/recipes/ltr_finder_parallel/build.sh
new file mode 100644
index 0000000000000..5967719b8716f
--- /dev/null
+++ b/recipes/ltr_finder_parallel/build.sh
@@ -0,0 +1,24 @@
+#!/bin/sh
+set -x -e
+
+LTR_FINDER_PARALLEL_DIR=${PREFIX}/share/LTR_FINDER_parallel
+
+mkdir -p ${PREFIX}/bin
+mkdir -p ${LTR_FINDER_PARALLEL_DIR}
+cp -r * ${LTR_FINDER_PARALLEL_DIR}
+
+# LTR_FINDER_parallel creates the path to ltr_finder by using `which ltr_finder`
+# `which ltr_finder` returns the path along with a newline character '\n'.
+# To replace the newline character, LTR_FINDER_parallel matches regex 'ltr_finder\\n?'
+# This regex logic fails in the case of this CONDA recipe because the path to 
+# ltr_finder includes ltr_finder_parallel which is replaced as _parallel, resulting in
+# an invalid path. I have changed the regex so that ltr_finder_parallel is not replaced.
+sed -i.bak 's|\$ltr_finder=~s/ltr_finder\\n?//;|\$ltr_finder=~s/\\bltr_finder\\n?\$//m;|' \
+    ${LTR_FINDER_PARALLEL_DIR}/LTR_FINDER_parallel
+
+cat <<END >>${PREFIX}/bin/LTR_FINDER_parallel
+#!/bin/bash
+perl ${LTR_FINDER_PARALLEL_DIR}/LTR_FINDER_parallel \$@
+END
+
+chmod a+x ${PREFIX}/bin/LTR_FINDER_parallel
diff --git a/recipes/ltr_finder_parallel/meta.yaml b/recipes/ltr_finder_parallel/meta.yaml
new file mode 100644
index 0000000000000..90c1ab418a74c
--- /dev/null
+++ b/recipes/ltr_finder_parallel/meta.yaml
@@ -0,0 +1,39 @@
+{% set name = "LTR_FINDER_parallel" %}
+{% set version = "1.1" %}
+{% set sha256 = "5d1fed2a3a38c0927ccd7fc6cc38ba13ce293c5b1805299c999c5d52d085a1b9" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://github.com/oushujun/LTR_FINDER_parallel/archive/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 1
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage('ltr_finder_parallel', max_pin='x') }}
+
+requirements:
+  run:
+    - ltr_finder
+
+test:
+  commands:
+    - ltr_finder 2>&1 | grep -i usage
+    - LTR_FINDER_parallel -check_dependencies > /dev/null
+
+about:
+  home: https://github.com/oushujun/LTR_FINDER_parallel
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: Perl wrapper to parallelize ltr_finder
+  dev_url: https://github.com/oushujun/LTR_FINDER_parallel
+  doc_url: https://github.com/oushujun/LTR_FINDER_parallel
+
+extra:
+  identifiers:
+    - doi:10.1186/s13100-019-0193-0
diff --git a/recipes/ltr_harvest_parallel/build.sh b/recipes/ltr_harvest_parallel/build.sh
new file mode 100644
index 0000000000000..ebadfe1bb70e0
--- /dev/null
+++ b/recipes/ltr_harvest_parallel/build.sh
@@ -0,0 +1,15 @@
+#!/bin/sh
+set -x -e
+
+LTR_HARVEST_PARALLEL_DIR=${PREFIX}/share/LTR_HARVEST_parallel
+
+mkdir -p ${PREFIX}/bin
+mkdir -p ${LTR_HARVEST_PARALLEL_DIR}
+cp -r bin/LTR_HARVEST_parallel/* ${LTR_HARVEST_PARALLEL_DIR}
+
+cat <<END >>${PREFIX}/bin/LTR_HARVEST_parallel
+#!/bin/bash
+perl ${LTR_HARVEST_PARALLEL_DIR}/LTR_HARVEST_parallel \$@
+END
+
+chmod a+x ${PREFIX}/bin/LTR_HARVEST_parallel
diff --git a/recipes/ltr_harvest_parallel/meta.yaml b/recipes/ltr_harvest_parallel/meta.yaml
new file mode 100644
index 0000000000000..31bb99212a8ba
--- /dev/null
+++ b/recipes/ltr_harvest_parallel/meta.yaml
@@ -0,0 +1,41 @@
+{% set name = "LTR_HARVEST_parallel" %}
+{% set version = "1.1" %}
+{% set edta_version = "2.2.0" %}
+{% set sha256 = "3515667804437f749f0bb934812ca83b23ec5472c221786f6e5a0d4b613a1a7a" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://github.com/oushujun/EDTA/archive/v{{ edta_version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 1
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage('ltr_harvest_parallel', max_pin='x') }}
+
+requirements:
+  run:
+    - perl
+    - genometools-genometools
+
+test:
+  commands:
+    - LTR_HARVEST_parallel -check_dependencies > /dev/null
+
+about:
+  home: https://github.com/oushujun/EDTA/tree/8980f498f05ad63dbffa3241842d3d38e939531b/bin/LTR_HARVEST_parallel
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: Perl wrapper for parallel execution of LTR_harvest
+  dev_url: https://github.com/oushujun/EDTA/tree/8980f498f05ad63dbffa3241842d3d38e939531b/bin/LTR_HARVEST_parallel
+  doc_url: https://github.com/oushujun/EDTA/tree/8980f498f05ad63dbffa3241842d3d38e939531b/bin/LTR_HARVEST_parallel
+
+extra:
+  identifiers:
+    - doi:10.1186/s13059-019-1905-y
+    - doi:10.1101/2022.10.09.511471
diff --git a/recipes/ltr_retriever/meta.yaml b/recipes/ltr_retriever/meta.yaml
index 64ee4402ab215..fab51c19ad426 100644
--- a/recipes/ltr_retriever/meta.yaml
+++ b/recipes/ltr_retriever/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "LTR_retriever" %}
-{% set version = "2.9.5" %}
-{% set sha256 = "f50812e6342a1d427a69e11e7ccbf21d7d72acf52c373fbd4ffdbe8a96dd62b7" %}
+{% set version = "2.9.9" %}
+{% set sha256 = "ef7d59349c0cbb3c819a102e68488b85cb116c099a4512d72d8a70293f13c7c8" %}
 
 package:
   name: "{{ name|lower }}"
@@ -13,21 +13,17 @@ source:
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('ltr_retriever', max_pin="x") }}
 
-channels:
-  - bioconda
-  - anaconda
-  - conda-forge
-  - defaults
-  
 requirements:
   run:
     - perl-text-soundex
     - perl
     - cd-hit
     - repeatmasker <4.1.5
-    - rmblast <2.11
-    - libstdcxx-ng <13
+    - rmblast
+    - libstdcxx-ng
     - tesorter
 
 test:
@@ -36,8 +32,13 @@ test:
 
 about:
   home: https://github.com/oushujun/LTR_retriever
-  license: GPLv3
-  license_family: GPL
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
   summary: Sensitive and accurate identification of LTR retrotransposons
   dev_url: https://github.com/oushujun/LTR_retriever
+
+extra:
+  identifiers:
+    - doi:10.1104/pp.17.01310
+    - biotools:ltr_retriever
diff --git a/recipes/lusstr/meta.yaml b/recipes/lusstr/meta.yaml
index 3dcccd243cbf3..58fb667975528 100644
--- a/recipes/lusstr/meta.yaml
+++ b/recipes/lusstr/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.6.4" %}
-{% set sha256 = "185da32dd175bd15021c697cbb36da28d64bd6eed0b48846c8002941840414ab" %}
+{% set version = "0.9" %}
+{% set sha256 = "abb32bac6d4fd86fbbcd630ef2b254ff66a5658bb3ef6efeb014c7304118561e" %}
 
 package:
     name: lusstr
@@ -12,21 +12,24 @@ source:
 build:
     noarch: python
     entry_points:
-        - lusstr = lusSTR.__main__:main
-    script: python -m pip install --no-deps --ignore-installed .
+        - lusstr = lusSTR.cli:main
+    script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation . -vvv
     number: 0
+    run_exports:
+        - {{ pin_subpackage('lusstr', max_pin="x.x") }}
 
 requirements:
     host:
-        - python >=3
+        - python >=3,<3.12
         - pip
     run:
-        - python >=3
+        - python >=3,<3.12
         - pandas >=1.0,<2.0
         - xlrd >=1.0,<2.0
         - openpyxl >=3.0.6
-        - snakemake >=7.22.0
+        - snakemake-minimal >=7.22.0,<8.0
         - pyyaml >=6.0
+        - matplotlib-base >=3.5.3
 
 test:
     imports:
@@ -41,6 +44,7 @@ about:
     license_family: BSD
     summary: Tool for converting NGS sequence data of forensic STR loci to various annotation styles
     dev_url: https://www.github.com/bioforensics/lusSTR
+    license_file: LICENSE.txt
 
 extra:
     recipe-maintainers:
diff --git a/recipes/maaslin2/meta.yaml b/recipes/maaslin2/meta.yaml
index 08fb4ed966786..faa14bf9d455a 100644
--- a/recipes/maaslin2/meta.yaml
+++ b/recipes/maaslin2/meta.yaml
@@ -1,19 +1,21 @@
 {% set name = "MaAsLin2" %}
-{% set version = "0.99.12" %}
-{% set sha256 = "694b79550c59ad1d872bc89d68e516b0682ba5ce4a5fdc9dfe3b29a9e7524849" %}
+{% set version = "1.16.0" %}
+{% set sha256 = "38261a85db7dce552590110eed241e679307f5e6c0b67f1667d68c65c86e25b5" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://bitbucket.org/biobakery/maaslin2/get/0.99.12.tar.gz
+  url: https://www.bioconductor.org/packages/release/bioc/src/contrib/Maaslin2_{{ version }}.tar.gz
   sha256: {{ sha256 }}
   patches:
     - rpath.patch
 
 build:
-  number: 1
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x") }}
+  number: 0
   noarch: generic
   # This is required to make R link correctly on Linux.
   rpaths:
@@ -41,6 +43,7 @@ requirements:
     - r-optparse
     - r-hash
     - r-cplm  
+    - r-glmmtmb
   run:
     - r-base
     - bioconductor-edger
@@ -61,6 +64,7 @@ requirements:
     - r-optparse
     - r-hash
     - r-cplm
+    - r-glmmtmb
 
 test:
   commands:
@@ -70,8 +74,10 @@ test:
 about:
   home: http://huttenhower.sph.harvard.edu/maaslin2
   license: Custom OSS
+  license_file: LICENSE
   summary: "MaAsLin2 is comprehensive R package for efficiently determining multivariable association between microbial meta'omic features and clinical metadata."
 
 extra:
   maintainers:
     - npavlovikj
+    - ljmciver
diff --git a/recipes/macrel/meta.yaml b/recipes/macrel/meta.yaml
index 5056d2d5e2a71..67f0e499b2867 100644
--- a/recipes/macrel/meta.yaml
+++ b/recipes/macrel/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "macrel" %}
-{% set version = "1.2.0" %}
-{% set sha256 = "7d506748a68c163478426c0fa8183b1fec4c31acf47a1cddf677104aca029cd8" %}
+{% set version = "1.3.0" %}
+{% set sha256 = "c4cdd8cc186135b78bc8da4d40b71f0a62ecf622107a0c9c64c29b8000cfbda9" %}
 
 package:
   name: {{ name }}
@@ -16,6 +16,8 @@ build:
   entry_points:
     - macrel= macrel.main:main
   script: python -m pip install --disable-pip-version-check --no-cache-dir --ignore-installed --no-deps -vv .
+  run_exports:
+    - {{ pin_subpackage("macrel", max_pin="x.x") }}
 
 requirements:
   host:
@@ -28,10 +30,11 @@ requirements:
     - megahit
     - paladin
     - pandas
-    - scikit-learn
+    - scikit-learn <1.3.0
+    - joblib <1.3.0
     - tzlocal
-    - pyrodigal
-
+    - pyrodigal >=0.7.3
+  
 test:
   imports:
     - macrel
diff --git a/recipes/macs3/meta.yaml b/recipes/macs3/meta.yaml
new file mode 100644
index 0000000000000..53b070ffb72c9
--- /dev/null
+++ b/recipes/macs3/meta.yaml
@@ -0,0 +1,63 @@
+{% set name = "MACS3" %}
+{% set version = "3.0.1" %}
+{% set sha256 = "9e1a63685629852e6128a3270d264f990790538f48610aac7fd2fd139ef8fe12" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  git_url: https://github.com/macs3-project/MACS.git
+  git_rev: 34f9a81398ec2af78317cd0b128f3a1e52a68f17
+
+build:
+  number: 2
+  skip: True  # [py < 39]
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
+  run_exports:
+    - {{ pin_subpackage('macs3', max_pin="x.x") }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+  host:
+    - python
+    - zlib
+    - pip
+    - numpy >=1.25
+    - scipy >=1.12
+    - cython >=3.0
+    - hmmlearn 0.3
+    - scikit-learn >=1.3
+    - cykhash >=2.0,<3.0
+  run:
+    - python
+    - numpy >=1.25
+    - scipy >=1.12
+    - hmmlearn 0.3
+    - scikit-learn >=1.3
+    - cykhash >=2.0,<3.0
+
+test:
+  imports:
+    - MACS3
+  commands:
+    - macs3 -h
+
+about:
+  dev_url: https://github.com/macs3-project/MACS/
+  doc_url: https://macs3-project.github.io/MACS/
+  home: https://pypi.org/project/MACS3/
+  license: BSD-3-Clause
+  license_family: BSD
+  license_file: LICENSE
+  summary: Model Based Analysis for ChIP-Seq data
+
+extra:
+  identifiers:
+    - biotools:macs
+    - doi:10.1186/gb-2008-9-9-r137
+    - usegalaxy-eu:peakcalling_macs
+  skip-lints:
+    - uses_vcs_url
+    - missing_hash
diff --git a/recipes/macsyfinder/meta.yaml b/recipes/macsyfinder/meta.yaml
index aeb97eaa783a9..6e61954c4f6c9 100644
--- a/recipes/macsyfinder/meta.yaml
+++ b/recipes/macsyfinder/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "MacSyFinder" %}
-{% set version = "2.1.2" %}
+{% set version = "2.1.3" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,19 +7,28 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 19369dc15bdf08aac90c8e0bf8dfc51ffa409105738fa9c55131403435fde7c0
+  sha256: 28078e2e742598124aa216b7767db473290257dd265dbd9deafa687a9dbdf91a
 
 build:
   noarch: python
   number: 0
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  entry_points:
+    - macsyfinder=macsypy.scripts.macsyfinder:main
+    - macsydata=macsypy.scripts.macsydata:main
+    - macsyprofile=macsypy.scripts.macsyprofile:main
+    - macsyconfig=macsypy.scripts.macsyconfig:main
+    - macsysplit=macsypy.scripts.macsy_gembase_split:main
+    - macsymerge=macsypy.scripts.macsy_merge_results:main
+  run_exports:
+    - {{ pin_subpackage('macsyfinder', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - python
+    - python >=3.7
   run:
-    - python
+    - python >=3.7
     - colorlog
     - PyYAML >=5.1.1
     - packaging >=18.0
@@ -48,4 +57,3 @@ extra:
   identifiers:
     - biotools:macsyfinder
     - doi:10.1371/journal/pone.0110726
-
diff --git a/recipes/maegatk/meta.yaml b/recipes/maegatk/meta.yaml
new file mode 100644
index 0000000000000..a7a26ecda678c
--- /dev/null
+++ b/recipes/maegatk/meta.yaml
@@ -0,0 +1,64 @@
+{% set name = "maegatk" %}
+{% set version = "0.2.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/maegatk-{{ version }}.tar.gz
+  sha256: fce1ec287914e03ce2b317a4f6a338f1806cd82e5c77f4e4cb1efbd48c87bdda
+
+build:
+  number: 1
+  noarch: python
+  entry_points:
+    - maegatk = maegatk.cli:main
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation --no-cache-dir
+  run_exports:
+    - {{ pin_subpackage('maegatk', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3
+    - pip
+  run:
+    - python >=3
+    - click
+    - pysam
+    - pytest
+    - snakemake-minimal <8
+    - pulp <2.8
+    - biopython
+    - optparse-pretty
+    - regex
+    - ruamel.yaml
+    - openjdk
+    - fgbio
+    - bwa
+    - samtools
+    - freebayes
+    - r-base
+    - r-dplyr
+    - r-data.table
+    - r-matrix
+    - bioconductor-genomicranges
+    - bioconductor-summarizedexperiment
+
+test:
+  imports:
+    - maegatk
+  commands:
+    - maegatk --help
+
+about:
+  home: https://github.com/caleblareau/maegatk
+  summary: Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE.txt
+  description: Processing and quality control of mitochondrial genome variants from MAESTER data.
+
+extra:
+  recipe-maintainers:
+    - mencian
diff --git a/recipes/mafft/7.310/build.sh b/recipes/mafft/7.310/build.sh
deleted file mode 100644
index 4b6aa5d8f2884..0000000000000
--- a/recipes/mafft/7.310/build.sh
+++ /dev/null
@@ -1,8 +0,0 @@
-#!/bin/bash
-
-# cd to location of Makefile and source
-cd $SRC_DIR/core
-
-export PRFX=$PREFIX
-make CC="${CC} -fcommon" CXX="${CXX} -fcommon"
-make install
diff --git a/recipes/mafft/7.310/linux-makefile.patch b/recipes/mafft/7.310/linux-makefile.patch
deleted file mode 100644
index 214b12eabf75d..0000000000000
--- a/recipes/mafft/7.310/linux-makefile.patch
+++ /dev/null
@@ -1,8 +0,0 @@
---- core/Makefile   2015-10-19 11:46:17.000000000 -0400
-+++ core/linux-makefile   2015-10-19 12:06:49.000000000 -0400
-@@ -1,4 +1,4 @@
--PREFIX = /usr/local
-+PREFIX = $(PRFX)
- LIBDIR = $(PREFIX)/libexec/mafft
- BINDIR = $(PREFIX)/bin
- MANDIR = $(PREFIX)/share/man/man1
diff --git a/recipes/mafft/7.310/meta.yaml b/recipes/mafft/7.310/meta.yaml
deleted file mode 100644
index 88bd286f36a22..0000000000000
--- a/recipes/mafft/7.310/meta.yaml
+++ /dev/null
@@ -1,33 +0,0 @@
-package:
-  name: mafft
-  version: '7.310'
-
-source:
-  md5: fcb68a47d4506b93bb8463ff29b3cbc4
-  url: http://mafft.cbrc.jp/alignment/software/mafft-7.310-without-extensions-src.tgz
-  patches:
-    - osx-makefile.patch # [osx]
-    - linux-makefile.patch # [linux]
-
-build:
-  number: 7
-  skip: True  # [osx]
-
-requirements:
-  build:
-    - make
-    - {{ compiler('c') }}
-    - {{ compiler('cxx') }}
-
-test:
-  commands:
-    - mafft --version
-
-about:
-  home: 'http://mafft.cbrc.jp/alignment/software/'
-  license: BSD
-  summary: Multiple alignment program for amino acid or nucleotide sequences based on fast Fourier transform
-
-extra:
-  skip-lints:
-    - should_not_be_noarch_source
diff --git a/recipes/mafft/7.310/osx-makefile.patch b/recipes/mafft/7.310/osx-makefile.patch
deleted file mode 100644
index 65ef81f93161d..0000000000000
--- a/recipes/mafft/7.310/osx-makefile.patch
+++ /dev/null
@@ -1,17 +0,0 @@
---- core/Makefile	2015-10-19 11:46:17.000000000 -0400
-+++ core/osx-makefile	2015-10-19 12:06:49.000000000 -0400
-@@ -1,4 +1,4 @@
--PREFIX = /usr/local
-+PREFIX = $(PRFX)
- LIBDIR = $(PREFIX)/libexec/mafft
- BINDIR = $(PREFIX)/bin
- MANDIR = $(PREFIX)/share/man/man1
-@@ -6,7 +6,7 @@
- 
- #MNO_CYGWIN = -mno-cygwin
- 
--ENABLE_MULTITHREAD = -Denablemultithread
-+#ENABLE_MULTITHREAD = -Denablemultithread
- # Comment out the above line if your compiler 
- # does not support TLS (thread-local strage).
- 
diff --git a/recipes/mafft/build.sh b/recipes/mafft/build.sh
deleted file mode 100644
index 918d2ffe0c2db..0000000000000
--- a/recipes/mafft/build.sh
+++ /dev/null
@@ -1,7 +0,0 @@
-#!/bin/bash
-
-# cd to location of Makefile and source
-cd $SRC_DIR/core
-
-make CC="$CC" CFLAGS="$CFLAGS" PREFIX="$PREFIX" DASH_CLIENT="dash_client"
-make install PREFIX="$PREFIX" DASH_CLIENT="dash_client"
diff --git a/recipes/mafft/meta.yaml b/recipes/mafft/meta.yaml
deleted file mode 100644
index 4464adcdccfad..0000000000000
--- a/recipes/mafft/meta.yaml
+++ /dev/null
@@ -1,35 +0,0 @@
-{% set name = "mafft" %}
-{% set version = "7.520" %}
-
-package:
-  name: {{ name|lower }}
-  version: {{ version }}
-
-source:
-# url: https://mafft.cbrc.jp/alignment/software/mafft-{{ version }}-without-extensions-src.tgz
-  url: https://gitlab.com/sysimm/mafft/-/archive/v{{ version }}/mafft-v{{ version }}.zip
-  sha256: "986042f7eb9d5aba237b7b9701974e20b6952cb7d585c66fd979137ed4a34c9b"
-
-build:
-  number: 2
-# skip: True  # [osx]
-
-requirements:
-  build:
-    - make
-    - {{ compiler('c') }}
-    - {{ compiler('go-cgo') }}
-
-test:
-  commands:
-    - mafft --version
-
-about:
-  home: 'http://mafft.cbrc.jp/alignment/software/'
-  license: BSD
-  summary: Multiple alignment program for amino acid or nucleotide sequences based on fast Fourier transform
-
-extra:
-  identifiers:
-    - doi:10.1093/nar/gkf436
-    - usegalaxy-eu:rbc_mafft
diff --git a/recipes/mageck/meta.yaml b/recipes/mageck/meta.yaml
index 9ed1fab66174c..d711f9765c5dc 100644
--- a/recipes/mageck/meta.yaml
+++ b/recipes/mageck/meta.yaml
@@ -7,7 +7,9 @@ source:
   sha256: b06a18036da63959cd7751911a46727aefe2fb1d8dd79d95043c3e3bdaf1d93a
 
 build:
-  number: 3
+  number: 4
+  run_exports:
+    - {{ pin_subpackage('mageck', max_pin="x.x") }}
 
 requirements:
   build:
@@ -32,3 +34,7 @@ about:
   home: http://mageck.sourceforge.net
   license: BSD License
   summary: MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout), an algorithm to process, QC, analyze and visualize CRISPR screening data.
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/magic-impute/LICENSE b/recipes/magic-impute/LICENSE
new file mode 100644
index 0000000000000..23cb790338e19
--- /dev/null
+++ b/recipes/magic-impute/LICENSE
@@ -0,0 +1,339 @@
+                    GNU GENERAL PUBLIC LICENSE
+                       Version 2, June 1991
+
+ Copyright (C) 1989, 1991 Free Software Foundation, Inc., <http://fsf.org/>
+ 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+                            Preamble
+
+  The licenses for most software are designed to take away your
+freedom to share and change it.  By contrast, the GNU General Public
+License is intended to guarantee your freedom to share and change free
+software--to make sure the software is free for all its users.  This
+General Public License applies to most of the Free Software
+Foundation's software and to any other program whose authors commit to
+using it.  (Some other Free Software Foundation software is covered by
+the GNU Lesser General Public License instead.)  You can apply it to
+your programs, too.
+
+  When we speak of free software, we are referring to freedom, not
+price.  Our General Public Licenses are designed to make sure that you
+have the freedom to distribute copies of free software (and charge for
+this service if you wish), that you receive source code or can get it
+if you want it, that you can change the software or use pieces of it
+in new free programs; and that you know you can do these things.
+
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+anyone to deny you these rights or to ask you to surrender the rights.
+These restrictions translate to certain responsibilities for you if you
+distribute copies of the software, or if you modify it.
+
+  For example, if you distribute copies of such a program, whether
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+
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+that everyone understands that there is no warranty for this free
+software.  If the software is modified by someone else and passed on, we
+want its recipients to know that what they have is not the original, so
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+
+  Finally, any free program is threatened constantly by software
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+patent must be licensed for everyone's free use or not licensed at all.
+
+  The precise terms and conditions for copying, distribution and
+modification follow.
+
+                    GNU GENERAL PUBLIC LICENSE
+   TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
+
+  0. This License applies to any program or other work which contains
+a notice placed by the copyright holder saying it may be distributed
+under the terms of this General Public License.  The "Program", below,
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+the term "modification".)  Each licensee is addressed as "you".
+
+Activities other than copying, distribution and modification are not
+covered by this License; they are outside its scope.  The act of
+running the Program is not restricted, and the output from the Program
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+Whether that is true depends on what the Program does.
+
+  1. You may copy and distribute verbatim copies of the Program's
+source code as you receive it, in any medium, provided that you
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+
+You may charge a fee for the physical act of transferring a copy, and
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+These requirements apply to the modified work as a whole.  If
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+  3. You may copy and distribute the Program (or a work based on it,
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+
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+  5. You are not required to accept this License, since you have not
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+  6. Each time you redistribute the Program (or any work based on the
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+This section is intended to make thoroughly clear what is believed to
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+  8. If the distribution and/or use of the Program is restricted in
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+
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+
+  10. If you wish to incorporate parts of the Program into other free
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+
+                            NO WARRANTY
+
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+FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW.  EXCEPT WHEN
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+  12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
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+YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER
+PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
+POSSIBILITY OF SUCH DAMAGES.
+
+                     END OF TERMS AND CONDITIONS
+
+            How to Apply These Terms to Your New Programs
+
+  If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
+  To do so, attach the following notices to the program.  It is safest
+to attach them to the start of each source file to most effectively
+convey the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+    {description}
+    Copyright (C) {year}  {fullname}
+
+    This program is free software; you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation; either version 2 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License along
+    with this program; if not, write to the Free Software Foundation, Inc.,
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+
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+
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+    Gnomovision version 69, Copyright (C) year name of author
+    Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+    This is free software, and you are welcome to redistribute it
+    under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License.  Of course, the commands you use may
+be called something other than `show w' and `show c'; they could even be
+mouse-clicks or menu items--whatever suits your program.
+
+You should also get your employer (if you work as a programmer) or your
+school, if any, to sign a "copyright disclaimer" for the program, if
+necessary.  Here is a sample; alter the names:
+
+  Yoyodyne, Inc., hereby disclaims all copyright interest in the program
+  `Gnomovision' (which makes passes at compilers) written by James Hacker.
+
+  {signature of Ty Coon}, 1 April 1989
+  Ty Coon, President of Vice
+
+This General Public License does not permit incorporating your program into
+proprietary programs.  If your program is a subroutine library, you may
+consider it more useful to permit linking proprietary applications with the
+library.  If this is what you want to do, use the GNU Lesser General
+Public License instead of this License.
diff --git a/recipes/magic-impute/meta.yaml b/recipes/magic-impute/meta.yaml
new file mode 100644
index 0000000000000..af8166a8e5aaa
--- /dev/null
+++ b/recipes/magic-impute/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "magic-impute" %}
+{% set version = "3.0.0" %}
+{% set sha256 = "0c3f6d17baf586c412c174709a19164f04e693fd1933a8c0399ae5c5bf1cfd7a" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/magic-impute-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  script: {{ PYTHON }} -m pip install . --no-deps -vvv
+  run_exports:
+    - {{ pin_subpackage('magic-impute', max_pin="x.x") }}
+  noarch: python
+
+requirements:
+  host:
+    - python
+    - pip
+  run:
+    - python
+    - matplotlib-base
+    - pandas
+    - numpy
+    - scprep
+    - graphtools
+
+test:
+  imports:
+    - magic
+
+about:
+  home: https://github.com/KrishnaswamyLab/MAGIC
+  summary: "Markov Affinity-based Graph Imputation of Cells"
+  license: GPL-2.0
+  license_family: GPL
+  license_file: LICENSE
+  doc_url: https://magic.readthedocs.io/en/stable/
+  dev_url: https://github.com/KrishnaswamyLab/MAGIC
+
+extra:
+  identifiers:
+    - doi:10.1016/j.cell.2018.05.061
diff --git a/recipes/magus-msa/meta.yaml b/recipes/magus-msa/meta.yaml
new file mode 100644
index 0000000000000..cde6aeeb6ad37
--- /dev/null
+++ b/recipes/magus-msa/meta.yaml
@@ -0,0 +1,63 @@
+{% set name = "magus-msa" %}
+{% set version = "0.2.0" %}
+{% set sha256 = "4152ab0d5cedfe0691dc1a3fce2cd38e3549bcd0883227a346cc47f093570141" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/vlasmirnov/MAGUS/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  noarch: python
+  number: 0
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation --no-cache-dir . -vvv
+  entry_points:
+    - magus = magus.main:main
+  run_exports:
+    - {{ pin_subpackage('magus-msa', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.6
+    - pip
+  run:
+    - python >=3.6
+    - dendropy >=4.5.2
+    - mafft
+    - mcl
+    - fasttree
+    - clustalo
+    - hmmer
+
+test:
+  imports:
+    - magus
+    - magus.align
+    - magus.align.decompose
+    - magus.align.merge
+    - magus.align.merge.graph_build
+    - magus.align.merge.graph_cluster
+    - magus.align.merge.graph_trace
+    - magus.helpers
+    - magus.tasks
+    - magus.tools
+  commands:
+    - magus --help
+
+about:
+  home: "https://github.com/vlasmirnov/MAGUS"
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE.txt
+  summary: "Multiple Sequence Alignment using Graph Clustering"
+  doc_url: "https://github.com/vlasmirnov/MAGUS/blob/master/README.md"
+  dev_url: "https://github.com/vlasmirnov/MAGUS"
+
+
+extra:
+  identifiers:
+    - biotools:magus
+    - doi:10.1093/bioinformatics/btaa992
diff --git a/recipes/malt/build.sh b/recipes/malt/build.sh
index 49b33d38c0310..61ca8fc5e25e0 100755
--- a/recipes/malt/build.sh
+++ b/recipes/malt/build.sh
@@ -1,9 +1,9 @@
 #!/bin/bash
 
 # call installer
-chmod u+x MALT_unix_0_6_1.sh
+chmod u+x MALT_unix_0_6_2.sh
 MALT="$PREFIX/opt/$PKG_NAME-$PKG_VERSION"
-./MALT_unix_0_6_1.sh -q -dir "$MALT"
+./MALT_unix_0_6_2.sh -q -dir "$MALT"
 
 ln -s "$MALT"/malt-build "$PREFIX"/bin/malt-build
 ln -s "$MALT"/malt-run "$PREFIX"/bin/malt-run
diff --git a/recipes/malt/meta.yaml b/recipes/malt/meta.yaml
index 154885195a594..28c4fe7bffb80 100755
--- a/recipes/malt/meta.yaml
+++ b/recipes/malt/meta.yaml
@@ -1,12 +1,14 @@
 package:
     name: malt
-    version: 0.61 # Keep without patch release decimal. Versioning style changed in 0.5 causing latest-version sorting problems when installing from bioconda.  
+    version: 0.62 # Keep without patch release decimal. Versioning style changed in 0.5 causing latest-version sorting problems when installing from bioconda.  
 build:
     noarch: generic
     number: 0
+    run_exports:
+      - {{ pin_subpackage("malt", max_pin="x.x") }}
 source:
-    md5: 41573f8c652fc81f3745729dee2d5e2d
-    url: https://software-ab.informatik.uni-tuebingen.de/download/malt/MALT_unix_0_6_1.sh
+    md5: 3e9b7516c722ca959d92722bea209b04
+    url: https://maira.cs.uni-tuebingen.de/download/malt/MALT_unix_0_6_2.sh
 requirements:
     build:
         - openjdk
diff --git a/recipes/malva/build_failure.linux-64.yaml b/recipes/malva/build_failure.linux-64.yaml
deleted file mode 100644
index 414662d68c286..0000000000000
--- a/recipes/malva/build_failure.linux-64.yaml
+++ /dev/null
@@ -1,104 +0,0 @@
-recipe_sha: d1651f674064650225149083c22db4ade1849d8d8ac92fd1d03fd7168e972dce  # The commit at which this recipe failed to build.
-skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
-log: |-
-  export PREFIX=/opt/conda/conda-bld/malva_1685353511262/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho
-  export BUILD_PREFIX=/opt/conda/conda-bld/malva_1685353511262/_build_env
-  export SRC_DIR=/opt/conda/conda-bld/malva_1685353511262/work
-  INFO: activate-binutils_linux-64.sh made the following environmental changes:
-  ADDR2LINE=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-addr2line
-  AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ar
-  AS=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-as
-  CXXFILT=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cfilt
-  ELFEDIT=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-elfedit
-  GPROF=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gprof
-  LD=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ld
-  LD_GOLD=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ld.gold
-  NM=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-nm
-  OBJCOPY=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-objcopy
-  OBJDUMP=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-objdump
-  RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ranlib
-  READELF=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-readelf
-  SIZE=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-size
-  STRINGS=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-strings
-  STRIP=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-strip
-  INFO: activate-gcc_linux-64.sh made the following environmental changes:
-  BUILD=x86_64-conda-linux-gnu
-  CC=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc
-  CC_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc
-  CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/malva-2.0.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
-  CMAKE_ARGS=-DCMAKE_AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ar -DCMAKE_CXX_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ar -DCMAKE_C_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ar -DCMAKE_RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ranlib -DCMAKE_CXX_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ranlib -DCMAKE_C_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ranlib -DCMAKE_LINKER=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ld -DCMAKE_STRIP=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-strip -DCMAKE_FIND_ROOT_PATH_MODE_PROGRAM=NEVER -DCMAKE_FIND_ROOT_PATH_MODE_LIBRARY=ONLY -DCMAKE_FIND_ROOT_PATH_MODE_INCLUDE=ONLY -DCMAKE_FIND_ROOT_PATH=$PREFIX;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot -DCMAKE_INSTALL_PREFIX=$PREFIX -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_PROGRAM_PATH=$BUILD_PREFIX/bin;$PREFIX/bin
-  CMAKE_PREFIX_PATH=$PREFIX:$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr
-  CONDA_BUILD_SYSROOT=$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot
-  CONDA_TOOLCHAIN_BUILD=x86_64-conda-linux-gnu
-  CONDA_TOOLCHAIN_HOST=x86_64-conda-linux-gnu
-  CPP=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cpp
-  CPPFLAGS=-DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include
-  DEBUG_CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/malva-2.0.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
-  DEBUG_CPPFLAGS=-D_DEBUG -D_FORTIFY_SOURCE=2 -Og -isystem $PREFIX/include
-  GCC=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc
-  GCC_AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ar
-  GCC_NM=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-nm
-  GCC_RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ranlib
-  HOST=x86_64-conda-linux-gnu
-  LDFLAGS=-Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,$PREFIX/lib -Wl,-rpath-link,$PREFIX/lib -L$PREFIX/lib
-  MESON_ARGS=--buildtype release --prefix=$PREFIX -Dlibdir=lib
-  _CONDA_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_conda_cos6_linux_gnu
-  build_alias=x86_64-conda-linux-gnu
-  host_alias=x86_64-conda-linux-gnu
-  -BUILD=x86_64-conda_cos6-linux-gnu
-  -CONDA_BUILD_SYSROOT=
-  INFO: activate-gxx_linux-64.sh made the following environmental changes:
-  CXX=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c
-  CXXFLAGS=-fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/malva-2.0.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
-  CXX_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c
-  DEBUG_CXXFLAGS=-fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/malva-2.0.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
-  GXX=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-g
-  -- The C compiler identification is GNU 12.2.0
-  -- The CXX compiler identification is GNU 12.2.0
-  -- Detecting C compiler ABI info
-  -- Detecting C compiler ABI info - done
-  -- Check for working C compiler: $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc - skipped
-  -- Detecting C compile features
-  -- Detecting C compile features - done
-  -- Detecting CXX compiler ABI info
-  -- Detecting CXX compiler ABI info - done
-  -- Check for working CXX compiler: $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c - skipped
-  -- Detecting CXX compile features
-  -- Detecting CXX compile features - done
-  -- SDSL found $BUILD_PREFIX/lib/libsdsl.a
-  -- KMC includes found $PREFIX/include
-  -- ZSTD found $BUILD_PREFIX/lib/libzstd.a
-  -- ZSTD includes found $PREFIX/include
-  -- Configuring done (0.4s)
-  -- Generating done (0.0s)
-  -- Build files have been written to: $SRC_DIR/build
-  [ 25%] Building CXX object CMakeFiles/malva-geno.dir/zstdstream.cpp.o
-  [ 50%] Building C object CMakeFiles/malva-geno.dir/xxhash.c.o
-  [ 75%] Building CXX object CMakeFiles/malva-geno.dir/main.cpp.o
-  In file included from /opt/conda/conda-bld/malva_1685353511262/work/main.cpp:44:
-  /opt/conda/conda-bld/malva_1685353511262/work/bloom_filter.hpp:28:10: fatal error: sdsl/bit_vectors.hpp: No such file or directory
-     28 | #include <sdsl/bit_vectors.hpp>
-        |          ^~~~~~~~~~~~~~~~~~~~~~
-  compilation terminated.
-  make[2]: *** [CMakeFiles/malva-geno.dir/build.make:104: CMakeFiles/malva-geno.dir/main.cpp.o] Error 1
-  make[1]: *** [CMakeFiles/Makefile2:83: CMakeFiles/malva-geno.dir/all] Error 2
-  make: *** [Makefile:91: all] Error 2
-  Traceback (most recent call last):
-    File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
-      sys.exit(main())
-    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
-      call_conda_build(action, config)
-    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
-      result = api.build(
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
-      return build_tree(
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
-      packages_from_this = build(metadata, stats,
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
-      utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
-      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
-      raise subprocess.CalledProcessError(proc.returncode, _args)
-  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/malva_1685353511262/work/conda_build.sh']' returned non-zero exit status 2.
-# Last 100 lines of the build log.
diff --git a/recipes/malva/malva.CMakeList.patch b/recipes/malva/malva.CMakeList.patch
index 46fe9a0cedf2c..6f7bc733d2c36 100644
--- a/recipes/malva/malva.CMakeList.patch
+++ b/recipes/malva/malva.CMakeList.patch
@@ -1,8 +1,22 @@
 diff --git a/CMakeLists.txt b/CMakeLists.txt
-index 5796d8b..9030264 100644
+index 5796d8b..351fd24 100644
 --- a/CMakeLists.txt
 +++ b/CMakeLists.txt
-@@ -32,9 +32,17 @@ else ()
+@@ -18,6 +18,13 @@ else ()
+     message(STATUS "SDSL found ${SDSL}")
+ endif ()
+ 
++find_path(SDSL_INCLUDE_DIR NAMES sdsl/bit_vectors.hpp PATHS ${CMAKE_SYSTEM_PREFIX_PATH})
++if (NOT SDSL_INCLUDE_DIR)
++    message(FATAL_ERROR "bit_vectors.hpp (part of sdsl-lite) required")
++else ()
++    message(STATUS "SDSL includes found ${SDSL_INCLUDE_DIR}")
++endif ()
++
+ find_path(KMC_INCLUDE_DIR NAMES kmc_file.h PATHS ${CMAKE_SYSTEM_PREFIX_PATH} PATH_SUFFIXES "kmc")
+ if (NOT KMC_INCLUDE_DIR)
+     message(FATAL_ERROR "kmc_file.h (part of libkmc-dev) required")
+@@ -32,9 +39,18 @@ else ()
      message(STATUS "ZSTD found ${ZSTD}")
  endif ()
  
@@ -16,6 +30,7 @@ index 5796d8b..9030264 100644
  target_include_directories(malva-geno
         PRIVATE ${PROJECT_SOURCE_DIR}
         PRIVATE ${KMC_INCLUDE_DIR}
++       PRIVATE ${SDSL_INCLUDE_DIR}
 +       PRIVATE ${ZSTD_INCLUDE_DIR}
  )
  
diff --git a/recipes/malva/meta.yaml b/recipes/malva/meta.yaml
index f82ac08b27bfd..72c392b21a442 100644
--- a/recipes/malva/meta.yaml
+++ b/recipes/malva/meta.yaml
@@ -13,8 +13,10 @@ source:
     - malva.CMakeList.patch
 
 build:
-  number: 3
+  number: 4
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage('malva', max_pin="x") }}
 
 requirements:
   build:
@@ -27,10 +29,10 @@ requirements:
   host:
     - zlib
     - htslib
-    - kmc
+    - kmc =3.1
   run:
     - htslib
-    - kmc
+    - kmc =3.1
 
 test:
   commands:
@@ -40,6 +42,7 @@ test:
 about:
   home: https://algolab.github.io/malva/
   license: GPL-3.0-or-later
+  license_file: LICENSE
   summary: genotyping by Mapping-free ALternate-allele detection of known VAriants
 
 extra:
diff --git a/recipes/mapdamage2/meta.yaml b/recipes/mapdamage2/meta.yaml
index d4aa31c2dec15..df0ffa3284620 100644
--- a/recipes/mapdamage2/meta.yaml
+++ b/recipes/mapdamage2/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '2.2.1' %}
+{% set version = '2.2.2' %}
 
 package:
   name: mapdamage2
@@ -11,7 +11,7 @@ build:
 
 source:
   url: https://github.com/ginolhac/mapDamage/archive/{{ version }}.tar.gz
-  sha256: f86cd2b1fac3e6a1d6ccc97d37ef6cf3b5be07747c3d3894472a8d1da9eb595c
+  sha256: 0958ac559c5cdb064156a74df6fb8665610ec98521c892f8923cf2060f1014f8
   patches:
     - patch
 
diff --git a/recipes/mappy/build.sh b/recipes/mappy/build.sh
index b574ab80d53e9..f8457f291b1a6 100644
--- a/recipes/mappy/build.sh
+++ b/recipes/mappy/build.sh
@@ -3,4 +3,4 @@
 export C_INCLUDE_PATH=$PREFIX/include
 export LIBRARY_PATH=$PREFIX/lib
 
-$PYTHON setup.py install --single-version-externally-managed --record=record.txt
+${PYTHON} -m pip install . --no-build-isolation --no-deps -vvv
diff --git a/recipes/mappy/build_failure.osx-64.yaml b/recipes/mappy/build_failure.osx-64.yaml
deleted file mode 100644
index 8c01d13a166b7..0000000000000
--- a/recipes/mappy/build_failure.osx-64.yaml
+++ /dev/null
@@ -1,104 +0,0 @@
-recipe_sha: 624d20276cc122996176684e48e0e6d529dbccfcf7a07d55454e754e178d9d32  # The commit at which this recipe failed to build.
-skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
-log: |-
-  map.c:367:70: warning: comparison of integers of different signs: 'size_t' (aka 'unsigned long') and 'const int64_t' (aka 'const long long') [-Wsign-compare]
-                  if (kmst.largest > 1U<<28 || (opt->cap_kalloc > 0 && kmst.capacity > opt->cap_kalloc)) {
-                                                                       ~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~
-  1 warning generated.
-  x86_64-apple-darwin13.4.0-clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem $PREFIX/include -fPIC -O2 -isystem $PREFIX/include -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/mappy-2.26 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.9 -I. -I$PREFIX/include/python3.10 -c misc.c -o build/temp.macosx-10.9-x86_64-cpython-310/misc.o -DHAVE_KALLOC -msse4.1
-  x86_64-apple-darwin13.4.0-clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem $PREFIX/include -fPIC -O2 -isystem $PREFIX/include -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/mappy-2.26 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.9 -I. -I$PREFIX/include/python3.10 -c options.c -o build/temp.macosx-10.9-x86_64-cpython-310/options.o -DHAVE_KALLOC -msse4.1
-  x86_64-apple-darwin13.4.0-clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem $PREFIX/include -fPIC -O2 -isystem $PREFIX/include -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/mappy-2.26 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.9 -I. -I$PREFIX/include/python3.10 -c pe.c -o build/temp.macosx-10.9-x86_64-cpython-310/pe.o -DHAVE_KALLOC -msse4.1
-  x86_64-apple-darwin13.4.0-clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem $PREFIX/include -fPIC -O2 -isystem $PREFIX/include -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/mappy-2.26 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.9 -I. -I$PREFIX/include/python3.10 -c python/mappy.c -o build/temp.macosx-10.9-x86_64-cpython-310/python/mappy.o -DHAVE_KALLOC -msse4.1
-  python/mappy.c:10830:21: warning: fallthrough annotation in unreachable code [-Wunreachable-code-fallthrough]
-                      CYTHON_FALLTHROUGH;
-                      ^
-  python/mappy.c:345:34: note: expanded from macro 'CYTHON_FALLTHROUGH'
-        #define CYTHON_FALLTHROUGH __attribute__((fallthrough))
-                                   ^
-  python/mappy.c:10841:21: warning: fallthrough annotation in unreachable code [-Wunreachable-code-fallthrough]
-                      CYTHON_FALLTHROUGH;
-                      ^
-  python/mappy.c:345:34: note: expanded from macro 'CYTHON_FALLTHROUGH'
-        #define CYTHON_FALLTHROUGH __attribute__((fallthrough))
-                                   ^
-  python/mappy.c:10941:21: warning: fallthrough annotation in unreachable code [-Wunreachable-code-fallthrough]
-                      CYTHON_FALLTHROUGH;
-                      ^
-  python/mappy.c:345:34: note: expanded from macro 'CYTHON_FALLTHROUGH'
-        #define CYTHON_FALLTHROUGH __attribute__((fallthrough))
-                                   ^
-  python/mappy.c:10952:21: warning: fallthrough annotation in unreachable code [-Wunreachable-code-fallthrough]
-                      CYTHON_FALLTHROUGH;
-                      ^
-  python/mappy.c:345:34: note: expanded from macro 'CYTHON_FALLTHROUGH'
-        #define CYTHON_FALLTHROUGH __attribute__((fallthrough))
-                                   ^
-  python/mappy.c:11089:21: warning: fallthrough annotation in unreachable code [-Wunreachable-code-fallthrough]
-                      CYTHON_FALLTHROUGH;
-                      ^
-  python/mappy.c:345:34: note: expanded from macro 'CYTHON_FALLTHROUGH'
-        #define CYTHON_FALLTHROUGH __attribute__((fallthrough))
-                                   ^
-  python/mappy.c:11100:21: warning: fallthrough annotation in unreachable code [-Wunreachable-code-fallthrough]
-                      CYTHON_FALLTHROUGH;
-                      ^
-  python/mappy.c:345:34: note: expanded from macro 'CYTHON_FALLTHROUGH'
-        #define CYTHON_FALLTHROUGH __attribute__((fallthrough))
-                                   ^
-  6 warnings generated.
-  x86_64-apple-darwin13.4.0-clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem $PREFIX/include -fPIC -O2 -isystem $PREFIX/include -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/mappy-2.26 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.9 -I. -I$PREFIX/include/python3.10 -c sdust.c -o build/temp.macosx-10.9-x86_64-cpython-310/sdust.o -DHAVE_KALLOC -msse4.1
-  x86_64-apple-darwin13.4.0-clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem $PREFIX/include -fPIC -O2 -isystem $PREFIX/include -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/mappy-2.26 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.9 -I. -I$PREFIX/include/python3.10 -c seed.c -o build/temp.macosx-10.9-x86_64-cpython-310/seed.o -DHAVE_KALLOC -msse4.1
-  seed.c:9:12: warning: comparison of integers of different signs: 'size_t' (aka 'unsigned long') and 'int32_t' (aka 'int') [-Wsign-compare]
-          if (mv->n <= q_occ_max || q_occ_frac <= 0.0f || q_occ_max <= 0) return;
-              ~~~~~ ^  ~~~~~~~~~
-  seed.c:65:14: warning: comparison of integers of different signs: 'uint32_t' (aka 'unsigned int') and 'int' [-Wsign-compare]
-                  if (a[i].n > max_occ) m;
-                      ~~~~~~ ^ ~~~~~~~
-  seed.c:68:24: warning: comparison of integers of different signs: 'uint32_t' (aka 'unsigned int') and 'int' [-Wsign-compare]
-                  if (i == n || a[i].n <= max_occ) {
-                                ~~~~~~ ^  ~~~~~~~
-  seed.c:81:18: warning: comparison of integers of different signs: 'uint32_t' (aka 'unsigned int') and 'int32_t' (aka 'int') [-Wsign-compare]
-                                                  if (a[j].n < (int32_t)(b[0]>>32)) { // then update the heap
-                                                      ~~~~~~ ^ ~~~~~~~~~~~~~~~~~~~
-  seed.c:90:17: warning: comparison of integers of different signs: 'uint32_t' (aka 'unsigned int') and 'int' [-Wsign-compare]
-                                          if (a[j].n > max_max_occ)
-                                              ~~~~~~ ^ ~~~~~~~~~~~
-  seed.c:109:17: warning: comparison of integers of different signs: 'size_t' (aka 'unsigned long') and 'int' [-Wsign-compare]
-                  for (i = 0; i < n_m0; i)
-                              ~ ^ ~~~~
-  seed.c:110:15: warning: comparison of integers of different signs: 'uint32_t' (aka 'unsigned int') and 'int' [-Wsign-compare]
-                          if (m[i].n > max_occ)
-                              ~~~~~~ ^ ~~~~~~~
-  seed.c:113:49: warning: comparison of integers of different signs: 'size_t' (aka 'unsigned long') and 'int' [-Wsign-compare]
-          for (i = 0, n_m = 0, *rep_len = 0, *n_a = 0; i < n_m0; i) {
-                                                       ~ ^ ~~~~
-  8 warnings generated.
-  x86_64-apple-darwin13.4.0-clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem $PREFIX/include -fPIC -O2 -isystem $PREFIX/include -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/mappy-2.26 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.9 -I. -I$PREFIX/include/python3.10 -c sketch.c -o build/temp.macosx-10.9-x86_64-cpython-310/sketch.o -DHAVE_KALLOC -msse4.1
-  x86_64-apple-darwin13.4.0-clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem $PREFIX/include -fPIC -O2 -isystem $PREFIX/include -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/mappy-2.26 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.9 -I. -I$PREFIX/include/python3.10 -c splitidx.c -o build/temp.macosx-10.9-x86_64-cpython-310/splitidx.o -DHAVE_KALLOC -msse4.1
-  creating build/lib.macosx-10.9-x86_64-cpython-310
-  x86_64-apple-darwin13.4.0-clang -bundle -undefined dynamic_lookup -Wl,-rpath,$PREFIX/lib -L$PREFIX/lib -Wl,-rpath,$PREFIX/lib -L$PREFIX/lib -Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,$PREFIX/lib -L$PREFIX/lib -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/mappy-2.26 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.9 build/temp.macosx-10.9-x86_64-cpython-310/align.o build/temp.macosx-10.9-x86_64-cpython-310/bseq.o build/temp.macosx-10.9-x86_64-cpython-310/esterr.o build/temp.macosx-10.9-x86_64-cpython-310/format.o build/temp.macosx-10.9-x86_64-cpython-310/hit.o build/temp.macosx-10.9-x86_64-cpython-310/index.o build/temp.macosx-10.9-x86_64-cpython-310/kalloc.o build/temp.macosx-10.9-x86_64-cpython-310/ksw2_extd2_sse.o build/temp.macosx-10.9-x86_64-cpython-310/ksw2_exts2_sse.o build/temp.macosx-10.9-x86_64-cpython-310/ksw2_extz2_sse.o build/temp.macosx-10.9-x86_64-cpython-310/ksw2_ll_sse.o build/temp.macosx-10.9-x86_64-cpython-310/kthread.o build/temp.macosx-10.9-x86_64-cpython-310/lchain.o build/temp.macosx-10.9-x86_64-cpython-310/map.o build/temp.macosx-10.9-x86_64-cpython-310/misc.o build/temp.macosx-10.9-x86_64-cpython-310/options.o build/temp.macosx-10.9-x86_64-cpython-310/pe.o build/temp.macosx-10.9-x86_64-cpython-310/python/mappy.o build/temp.macosx-10.9-x86_64-cpython-310/sdust.o build/temp.macosx-10.9-x86_64-cpython-310/seed.o build/temp.macosx-10.9-x86_64-cpython-310/sketch.o build/temp.macosx-10.9-x86_64-cpython-310/splitidx.o -lz -lm -lpthread -o build/lib.macosx-10.9-x86_64-cpython-310/mappy.cpython-310-darwin.so
-  dyld[21993]: Library not loaded: '@rpath/libtapi.dylib'
-    Referenced from: '/opt/mambaforge/envs/bioconda/pkgs/ld64_osx-64-609-h8ce0179_13/bin/x86_64-apple-darwin13.4.0-ld'
-    Reason: tried: '/opt/mambaforge/envs/bioconda/pkgs/ld64_osx-64-609-h8ce0179_13/bin/../lib/libtapi.dylib' (no such file), '/opt/mambaforge/envs/bioconda/pkgs/ld64_osx-64-609-h8ce0179_13/bin/../lib/libtapi.dylib' (no such file), '/usr/local/lib/libtapi.dylib' (no such file), '/usr/lib/libtapi.dylib' (no such file)
-  clang-15: error: unable to execute command: Abort trap: 6
-  clang-15: error: linker command failed due to signal (use -v to see invocation)
-  error: command '/opt/mambaforge/envs/bioconda/conda-bld/mappy_1686046171677/_build_env/bin/x86_64-apple-darwin13.4.0-clang' failed with exit code 1
-  Traceback (most recent call last):
-    File "/opt/mambaforge/envs/bioconda/bin/conda-mambabuild", line 10, in <module>
-      sys.exit(main())
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
-      call_conda_build(action, config)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
-      result = api.build(
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
-      return build_tree(
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
-      packages_from_this = build(metadata, stats,
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
-      utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
-      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
-      raise subprocess.CalledProcessError(proc.returncode, _args)
-  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/mambaforge/envs/bioconda/conda-bld/mappy_1686046171677/work/conda_build.sh']' returned non-zero exit status 1.
-# Last 100 lines of the build log.
diff --git a/recipes/mappy/meta.yaml b/recipes/mappy/meta.yaml
index 8125b86d3352f..422595563dc9d 100644
--- a/recipes/mappy/meta.yaml
+++ b/recipes/mappy/meta.yaml
@@ -1,15 +1,18 @@
-{% set version = "2.26" %}
+{% set name = "mappy" %}
+{% set version = "2.28" %}
 
 package:
-  name: mappy
+  name: {{ name }}
   version: {{ version }}
 
 source:
-  url: https://pypi.io/packages/source/m/mappy/mappy-{{ version }}.tar.gz
-  sha256: e53fbe9a3ea8762a64b8103f4f779c9fb16d418eaa0a731f45cebc83867a9b71
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/mappy-{{ version }}.tar.gz
+  sha256: 0ebf7a5d62bd668f5456028215e26176e180ca68161ac18d4f7b48045484cebb
 
 build:
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('mappy', max_pin="x") }}
 
 requirements:
   build:
@@ -17,7 +20,7 @@ requirements:
   host:
     - python
     - cython
-    - setuptools
+    - pip
     - zlib
   run:
     - python
@@ -30,4 +33,10 @@ test:
 about:
   home: https://github.com/lh3/minimap2
   license: MIT
+  license_family: MIT
+  license_file: LICENSE.txt
   summary: 'Minimap2 Python binding'
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/mapseq/build.sh b/recipes/mapseq/build.sh
index f1c15e5062500..f110617578b87 100755
--- a/recipes/mapseq/build.sh
+++ b/recipes/mapseq/build.sh
@@ -3,7 +3,7 @@
 #wget http://www.microbeatlas.org/mapref/mapref-2.2b.tar.gz
 #tar -Cdata -xvzf mapref-2.2b.tar.gz && mv data/mapref-2.2b/* data/ && rmdir data/mapref-2.2b && touch data/mapref-2.2b.fna
 
-touch data/mapref-2.2b.fna data/mapref-2.2b.fna.mscluster data/mapref-2.2b.fna.ncbitax data/mapref-2.2b.fna.otutax data/mapref-2.2b.gold.fna data/mapref-2.2b.gold.fna.mscluster data/mapref-2.2b.gold.fna.ncbitax data/mapref-2.2b.fna.otutax.97.ncbitax
+touch data/mapref-3.0.fna data/mapref-3.0.fna.mscluster data/mapref-3.0.fna.ncbitax data/mapref-3.0.fna.otutax data/mapref-3.0.gold.fna data/mapref-3.0.gold.fna.mscluster data/mapref-3.0.gold.fna.ncbitax data/mapref-3.0.fna.otutax.97.ncbitax data/mapref-3.0.otus.info
 ./bootstrap
 ./configure --prefix=$PREFIX CXXFLAGS="-O2 -I$CONDA_PREFIX/include"
 make
diff --git a/recipes/mapseq/meta.yaml b/recipes/mapseq/meta.yaml
index bd2db926e983e..8b345a23288f8 100644
--- a/recipes/mapseq/meta.yaml
+++ b/recipes/mapseq/meta.yaml
@@ -1,16 +1,18 @@
-{% set version = "2.1.1" %}
-{% set sha256 = "b66af114f82ed9671e250995d014704b58b8e19b7ec95b1ef05a02eb8c5e8018" %}
+{% set version = "2.1.1a" %}
+{% set sha256 = "5a33c6ff169b34a9e6985f68e808172035a0f0cb5fea699f7ed997dd537d9fc1" %}
 
 package:
   name: mapseq
   version: '{{ version }}'
 
 source:
-  url: https://github.com/jfmrod/MAPseq/archive/v{{ version }}.tar.gz
+  url: https://github.com/meringlab/MAPseq/archive/{{ version }}.tar.gz
   sha256: '{{ sha256 }}'
 
 build:
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('mapseq', max_pin="x") }}
 
 requirements:
   build:
diff --git a/recipes/mapseq/post-link.sh b/recipes/mapseq/post-link.sh
index 98c05ea57d5b1..19dcda7593cc4 100644
--- a/recipes/mapseq/post-link.sh
+++ b/recipes/mapseq/post-link.sh
@@ -2,12 +2,11 @@
 
 # downloading large (4GB) required dataset
 
-FN="mapref-2.2b.tar.gz"
+FN="mapref-3.0.full.tar.gz"
 URLS=(
-  "http://www.microbeatlas.org/mapref/mapref-2.2b.tar.gz"
+	"http://www.microbeatlas.org/mapref/mapref-3.0.full.tar.gz"
 )
-MD5="9ea29a1a4ec9293aa78fc660841121c8"
-
+MD5="ca1233057fb603eb89cf90fab159d776"
 
 STAGING=$PREFIX/share/mapseq
 #STAGING=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
@@ -20,39 +19,39 @@ TARBALL=$STAGING/$FN
 
 SUCCESS=0
 for URL in ${URLS[@]}; do
-  curl -L $URL > $TARBALL
-  [[ $? == 0 ]] || continue
-
-  # Platform-specific md5sum checks.
-  if [[ $(uname -s) == "Linux" ]]; then
-    if md5sum -c <<<"$MD5  $TARBALL"; then
-      SUCCESS=1
-      break
-    fi
-  else if [[ $(uname -s) == "Darwin" ]]; then
-    if [[ $(md5 $TARBALL | cut -f4 -d " ") == "$MD5" ]]; then
-      SUCCESS=1
-      break
-    fi
-  fi
-fi
+	curl -L $URL >$TARBALL
+	[[ $? == 0 ]] || continue
+
+	# Platform-specific md5sum checks.
+	if [[ $(uname -s) == "Linux" ]]; then
+		if md5sum -c <<<"$MD5  $TARBALL"; then
+			SUCCESS=1
+			break
+		fi
+	else
+		if [[ $(uname -s) == "Darwin" ]]; then
+			if [[ $(md5 $TARBALL | cut -f4 -d " ") == "$MD5" ]]; then
+				SUCCESS=1
+				break
+			fi
+		fi
+	fi
 done
 
 if [[ $SUCCESS != 1 ]]; then
-  echo "ERROR: post-link.sh was unable to download any of the following URLs with the md5sum $MD5:"
-  printf '%s\n' "${URLS[@]}"
-  exit 1
+	echo "ERROR: post-link.sh was unable to download any of the following URLs with the md5sum $MD5:"
+	printf '%s\n' "${URLS[@]}"
+	exit 1
 fi
 
 tar -C $STAGING -xvzf $TARBALL # >> $PREFIX/.messages.txt
 #echo "Staging directory: $STAGING" >> $PREFIX/.messages.txt
 #ls -lahrt $STAGING >> $PREFIX/.messages.txt
 #ls -lahrt $STAGING/mapref-2.2b >> $PREFIX/.messages.txt
-mv $STAGING/mapref-2.2b/* $STAGING/
-rmdir $STAGING/mapref-2.2b
+mv $STAGING/mapseq/* $STAGING/
+rmdir $STAGING/mapseq
 rm $TARBALL
 
-
 #echo "Staging directory2: $STAGING" >> $PREFIX/.messages.txt
 #ls -lahrt $STAGING >> $PREFIX/.messages.txt
 #echo "mapref:" >> $PREFIX/.messages.txt
@@ -61,8 +60,6 @@ rm $TARBALL
 #strings `which mapseq` | grep 'share/' >> $PREFIX/.messages.txt
 #ls -lahrt $STAGING/mapref-2.2b.fna >> $PREFIX/.messages.txt
 
-
-
 # WARNING: cannot run test because CircleCI probably has memory/cpu limits
 
 # testing to ensure dataset is correctly installed and found by mapseq
@@ -72,4 +69,3 @@ rm $TARBALL
 #echo "Results: $STAGING" >> $PREFIX/.messages.txt
 #cat $STAGING/test.fna.mseq >> $PREFIX/.messages.txt
 #rm $STAGING/test.fna.mseq
-
diff --git a/recipes/marker-magu/meta.yaml b/recipes/marker-magu/meta.yaml
new file mode 100644
index 0000000000000..68c2be224f205
--- /dev/null
+++ b/recipes/marker-magu/meta.yaml
@@ -0,0 +1,55 @@
+{% set name = "marker-magu" %}
+{% set version = "0.4.0" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://github.com/cmmr/{{ name }}/archive/v{{ version }}.tar.gz"
+  sha256: 78c638aab2f34a1e6c81edd3e6654c192d4c894d49630d4412a55a5350939196
+
+build:
+  number: 0
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage("marker-magu", max_pin="x") }}
+  entry_points:
+    - markermagu = markermagu.markermagu:markermagu
+  script:
+    - {{ PYTHON }} -m pip install . --no-deps -vv
+
+requirements:
+  host:
+    - pip
+    - python >=3.8
+  run:
+    - python >=3.8
+    - minimap2 >=2.21
+    - dashing >=1.0
+    - bwa-mem2 >=2.2.1
+    - samtools >=1.9
+    - fastani >=1.3
+    - coverm >=0.6.1
+    - seqkit >=2.4.0
+    - fastp >=0.23.2
+    - r-dplyr
+    - r-data.table
+    - r-base
+    - r-stringr
+    - coreutils
+
+test:
+  commands:
+    - markermagu --version
+
+about:
+  home: "https://github.com/cmmr/Marker-MAGu"
+  license: MIT
+  license_file: LICENSE
+  summary: "Marker-MAGu: Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes"
+  dev_url: "https://github.com/cmmr/Marker-MAGu"
+
+extra:
+  recipe-maintainers:
+    - mtisza1
diff --git a/recipes/marti/meta.yaml b/recipes/marti/meta.yaml
index 6ecbeef96092b..e86203beedb7e 100644
--- a/recipes/marti/meta.yaml
+++ b/recipes/marti/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "MARTi" %}
-{% set version = "0.9.14" %}
+{% set version = "0.9.16" %}
 
 package:
   name: {{ name|lower }}
@@ -7,11 +7,13 @@ package:
 
 source:
   url: https://github.com/richardmleggett/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: ec840d9ac3a5c290a3c4dfeca437ea1e5d4ee505ec0eb14876576e43c508659c
+  sha256: 85b06a61df8860d17c6de5282a820a8bd1b66bbb3d1f2351dbf5b54522aa1cb6
 
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('marti', max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/mashmap/build.sh b/recipes/mashmap/build.sh
index b1a38c75f9b6c..1be34f0a90f3c 100644
--- a/recipes/mashmap/build.sh
+++ b/recipes/mashmap/build.sh
@@ -10,5 +10,5 @@ export CPATH=${PREFIX}/include
 #   export MACOSX_DEPLOYMENT_TARGET=10.15  # Required to use std::filesystem
 # fi  
 
-cmake -H. -B${PREFIX} -DCMAKE_BUILD_TYPE=Release -DCMAKE_VERBOSE_MAKEFILE=1 -DOPTIMIZE_FOR_NATIVE=0
+cmake -H. -B${PREFIX} -DCMAKE_BUILD_TYPE=Release -DCMAKE_VERBOSE_MAKEFILE=1 -DOPTIMIZE_FOR_NATIVE=0 -DUSE_HTSLIB=1
 cmake --build ${PREFIX}
diff --git a/recipes/mashmap/meta.yaml b/recipes/mashmap/meta.yaml
index 6f1c4c8992715..86acff531bec5 100644
--- a/recipes/mashmap/meta.yaml
+++ b/recipes/mashmap/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "3.0.6" %}
+{% set version = "3.1.3" %}
 {% set github = "https://github.com/marbl/MashMap" %}
 
 package:
@@ -7,11 +7,13 @@ package:
 
 source:
   url: "{{ github }}/archive/v{{ version }}.tar.gz"
-  sha256: 53d1b4efad6650d8efbc28325637d1bdacd108eaad70fcc28e927f40ac5c2112
+  sha256: 7719dd6b3c25e650e16218252eaae7dbf424a10890d717ec3ad0920b102fd05a
 
 build:
   number: 0
-
+  run_exports:
+    - {{ pin_subpackage("mashmap", max_pin="x.x") }}
+    
 # Refer to INSTALL.txt for details.
 requirements:
   build:
@@ -23,11 +25,13 @@ requirements:
     - perl =5.26
     - zlib
     - gsl
+    - htslib
     - openblas
     #- mkl  # [osx]
   run:
     - zlib
     - gsl
+    - htslib
     - openblas
     #- mkl  # [osx]
 test:
diff --git a/recipes/mashpit/meta.yaml b/recipes/mashpit/meta.yaml
index 59823e05bd435..16a7f9b314a25 100644
--- a/recipes/mashpit/meta.yaml
+++ b/recipes/mashpit/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.9.2" %}
+{% set version = "0.9.6" %}
 
 package:
   name: mashpit
@@ -6,12 +6,14 @@ package:
 
 source:
   url: https://github.com/tongzhouxu/mashpit/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 8556e02af3d2478bff6cc83f0446690d77c171e7fd6f7d071eec19e70e8ef75b
+  sha256: 94754449251e51fff771c5d9579ef7016cf1d2984dfcdc5f01a558ceac772d14
 
 build:
   noarch: python
   script: python -m pip install --no-deps --ignore-installed .
   number: 0
+  run_exports:
+    - {{ pin_subpackage("mashpit", max_pin="x.x") }}
 
 requirements:
   host:
@@ -19,14 +21,19 @@ requirements:
     - pip
   run:
     - biopython =1.78
+    - dask >=2024.1
+    - flask >=3.0
+    - ncbi-datasets-cli >=16.10
+    - ncbi-datasets-pylib >=16.6.0
     - numpy >=1.19.5
     - python >=3.8
-    - python-dotenv
     - pandas >=1.1.5
-    - scipy =1.7.3
+    - requests
+    - scikit-bio
+    - scipy >=1.0
     - screed >=1.0.5
-    - sourmash >=4.2.2
-    - sra-tools >=2.10.8
+    - sourmash >=4.6.1
+    - tqdm
 
 test:
   commands:
diff --git a/recipes/mashtree/build.sh b/recipes/mashtree/build.sh
index 13bb17ae76f55..bf52ab95c5082 100644
--- a/recipes/mashtree/build.sh
+++ b/recipes/mashtree/build.sh
@@ -2,15 +2,15 @@
 
 set -x -e
 
-export INCLUDE_PATH="${PREFIX}/include"
-export LIBRARY_PATH="${PREFIX}/lib"
-export LD_LIBRARY_PATH="${PREFIX}/lib"
+export INCLUDE_PATH="${BUILD_PREFIX}/include"
+export LIBRARY_PATH="${BUILD_PREFIX}/lib"
+export LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:${BUILD_PREFIX}/lib"
 
-export LDFLAGS="-L${PREFIX}/lib"
-export CPPFLAGS="-I${PREFIX}/include"
+export LDFLAGS="-L${BUILD_PREFIX}/lib"
+export CPPFLAGS="-I${BUILD_PREFIX}/include"
 
 
-mkdir -p $PREFIX/bin
+mkdir -p $$PREFIX/bin
 
 mkdir -p perl-build
 mv bin/*pl perl-build
diff --git a/recipes/mashtree/meta.yaml b/recipes/mashtree/meta.yaml
index 809575743ed71..9352dab3ebbcd 100644
--- a/recipes/mashtree/meta.yaml
+++ b/recipes/mashtree/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "mashtree" %}
-{% set version = "1.2.0" %}
-{% set hash = "367ddb83fc99eebe40a168a998a2e7691e3a7b339b785a3a73eb31918996b6cd" %}
+{% set version = "1.4.6" %}
+{% set hash = "1bd427aba025886d9df99c95f685e06dc2226bca080a64a9cb9d341b5a3d6dac" %}
 
 package:
   name: {{ name|lower }}
@@ -11,7 +11,9 @@ source:
   sha256: {{ hash }}
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('mashtree', max_pin='x.x') }}
 
 requirements:
   build:
@@ -26,8 +28,7 @@ requirements:
     - perl-bioperl >=1.7.2
     - perl-dbd-sqlite >=1.58
     - perl-file-which
-    - mash  >=1.1
-    - sqlite
+    - mash >=1.1
     - quicktree
 test:
   commands:
diff --git a/recipes/mass2chem/meta.yaml b/recipes/mass2chem/meta.yaml
new file mode 100644
index 0000000000000..c5a5ce11d8bf2
--- /dev/null
+++ b/recipes/mass2chem/meta.yaml
@@ -0,0 +1,48 @@
+{% set name = "mass2chem" %}
+{% set version = "0.5.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/mass2chem-{{ version }}.tar.gz
+  sha256: 0ef8a49e9ae7e39502edf881249bbdeb445225ae91e6b96da3828a3793f0f8f5
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv
+  number: 0
+  run_exports:
+      - {{ pin_subpackage('mass2chem', max_pin="x.x") }}
+
+
+requirements:
+  host:
+    - python >=3.7
+    - setuptools >=42
+    - wheel
+    - pip
+  run:
+    - python >=3.7
+    - numpy
+    - scipy
+    - treelib
+
+test:
+  imports:
+    - mass2chem
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/shuzhao-li/mass2chem
+  summary: Common utilities for interpreting mass spectrometry data
+  license: BSD-Protection
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - hechth
diff --git a/recipes/massdash/meta.yaml b/recipes/massdash/meta.yaml
new file mode 100644
index 0000000000000..09f269a84b383
--- /dev/null
+++ b/recipes/massdash/meta.yaml
@@ -0,0 +1,56 @@
+{% set name = "massdash" %}
+{% set version = "0.0.9" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: 68d90f668312d94ec44f744376c0dad0b671fe78f01906d2e36ce43cc9c85ffa
+
+build:
+  number: 0
+  noarch: python
+  script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:  
+    - {{ pin_subpackage('massdash', max_pin='x.x') }}
+
+requirements:
+  host:
+    - pip
+    - python
+    - flake8
+    - flit
+    - flit-core
+    - pylint
+    - snapshottest
+  run:
+    - bokeh ==2.4.3
+    - click
+    - joblib
+    - matplotlib-base
+    - matplotlib-venn
+    - upsetplot
+    - numpy >=1.9.0
+    - pandas >=0.17
+    - plotly
+    - psutil
+    - pyopenms
+    - scipy
+    - streamlit
+    - tqdm
+
+test:
+  imports:
+    - massdash
+
+about:
+  home: https://github.com/Roestlab/massdash
+  license: BSD
+  license_family: BSD
+  summary: MassDash is a streamlined DIA mass spec visualization, analysis, optimization, and rapid prototyping.
+
+extra:
+  recipe-maintainers:
+    - singjc
diff --git a/recipes/massiveqc/meta.yaml b/recipes/massiveqc/meta.yaml
index c33bdd6ba7767..604dfee2c4aa0 100644
--- a/recipes/massiveqc/meta.yaml
+++ b/recipes/massiveqc/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "MassiveQC" %}
-{% set version = "0.1.1" %}
+{% set version = "0.1.2" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 5fe8362ca2850c058453e609b7898bff77efbc4436d275d9082bf21fabf6ed90
+  sha256: e68bbbddcbedba920f9d226dc0d9c242bada1f9af1a047fce5c60ed451ebb644
 
 build:
   noarch: python
@@ -16,6 +16,8 @@ build:
     - MultiQC = MassiveQC.MultiProcess:main
     - SingleQC = MassiveQC.SingleProcess:main
     - IsoDetect = MassiveQC.IsoDetect:main
+  run_exports:
+    - {{ pin_subpackage("massiveqc", max_pin="x.x") }}
   script: "{{ PYTHON }} -m pip install . -vv"
 
 requirements:
diff --git a/recipes/masurca/meta.yaml b/recipes/masurca/meta.yaml
index d9b9f6bd806ec..1663a0fe1c87f 100644
--- a/recipes/masurca/meta.yaml
+++ b/recipes/masurca/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "masurca" %}
-{% set version = "4.1.0" %}
+{% set version = "4.1.1" %}
 
 package:
   name: {{ name }}
@@ -7,11 +7,13 @@ package:
 
 source:
   url: https://github.com/alekseyzimin/masurca/releases/download/v{{ version }}/MaSuRCA-{{ version }}.tar.gz
-  sha256: 15078e24c79fe5aabe42748d64f95d15f3fbd7708e84d88fc07c4b7f2e4b0902
+  sha256: 8758f6196bf7f57e24e08bda84abddfff08feb4cea204c0eb5e1cb9fe8198573
 
 build:
-  number: 1
+  number: 0
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
 
 requirements:
   build:
diff --git a/recipes/matchms/meta.yaml b/recipes/matchms/meta.yaml
index 1eeb3285291ad..e906f78208735 100644
--- a/recipes/matchms/meta.yaml
+++ b/recipes/matchms/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "matchms" %}
-{% set version = "0.21.1" %}
+{% set version = "0.25.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,36 +7,39 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 9ef706361b885f8c23e14b470adb3a18fc0b156a0a243b70de8ec998a41e05ba
+  sha256: 451a3c31c829f70d21443f1c5d8bda341aa588bbad2a6087ea7f91f31ef5a868
 
 build:
-  number: 1
-  script: "{{ PYTHON }} -m pip install . -vv"
+  number: 0
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('matchms', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - python
+    - python >=3.8,<3.12
+    - poetry-core
   run:
     - deprecated
     - lxml
     - matplotlib-base
     - networkx
     - numba >=0.47
-    - numpy
+    - numpy <1.25
     - pickydict >=0.4.0
     - pyteomics >=4.6
-    - python
+    - python >=3.8,<3.12
     - pyyaml
     - rdkit >=2020.03.1
     - requests
-    - scipy >=1.4.0
+    - scipy >=1.4.0,<1.11
     - sparsestack >=0.4.1
     - tqdm
     - pillow =9.5
     - pandas
-
+    - pubchempy
 
 test:
   imports:
diff --git a/recipes/mavenn/meta.yaml b/recipes/mavenn/meta.yaml
index cb35b80828f25..076659f92a71b 100644
--- a/recipes/mavenn/meta.yaml
+++ b/recipes/mavenn/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "mavenn" %}
-{% set version = "1.0.0" %}
+{% set version = "1.0.2" %}
 
 package:
   name: mavenn
@@ -7,11 +7,13 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: c638cbe54b20fb0c698f694e2a655088c418d80e1e24fba4da1b436326a28054
+  sha256: 979f829ceb404399c2638feb971296b847d4c00c9d7fb8659c9f464b22ed25be
 
 build:
   number: 0
   noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
   script: "{{ PYTHON }} -m pip install . -vv --ignore-installed --no-deps"
 
 requirements:
diff --git a/recipes/mavis-config/meta.yaml b/recipes/mavis-config/meta.yaml
new file mode 100644
index 0000000000000..2673b80300283
--- /dev/null
+++ b/recipes/mavis-config/meta.yaml
@@ -0,0 +1,37 @@
+{% set name = "mavis-config" %}
+{% set version = "1.2.2" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/mavis_config-{{ version }}.tar.gz
+  sha256: b44e24d8b0ef2d406cdbc3e6c82bb6e6d26d1056d80c10bc5deda8b2b223a9e5
+
+build:
+  number: 0
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation --use-pep517
+  run_exports:
+    - {{ pin_subpackage('mavis-config', max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.7
+    - pip
+  run:
+    - python >=3.7
+    - snakemake-minimal >=7.18.1
+    - braceexpand
+
+test:
+  imports:
+    - mavis_config
+
+about:
+  home: https://github.com/bcgsc/mavis_config.git
+  summary: Config validation for running MAVIS via Snakemake
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE
diff --git a/recipes/mawk/meta.yaml b/recipes/mawk/meta.yaml
index 28545184f83bf..90a8f6efb736d 100644
--- a/recipes/mawk/meta.yaml
+++ b/recipes/mawk/meta.yaml
@@ -4,20 +4,31 @@
 package:
   name: mawk
   version: "1.3.4"
+
 source:
   url: https://invisible-mirror.net/archives/mawk/mawk-{{ version }}-{{ date }}.tgz
   sha256: db17115d1ed18ed1607c8b93291db9ccd4fe5e0f30d2928c3c5d127b23ec9e5b
+
 build:
-  number: 7
+  number: 8
+  run_exports:
+    - {{ pin_subpackage('mawk', max_pin="x") }}
+
 requirements:
   build:
     - make
     - {{ compiler('c') }}
   run:
+
 test:
   commands:
     - mawk -W usage
+
 about:
   home: http://invisible-island.net/mawk/
   license: Copyright (c) 2009-2014,2015 by Thomas E. Dickey
   summary: mawk is an interpreter for the AWK Programming Language.
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/mbg/meta.yaml b/recipes/mbg/meta.yaml
index a294ea3ab2f91..0ba6a59d45aed 100644
--- a/recipes/mbg/meta.yaml
+++ b/recipes/mbg/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "MBG" %}
-{% set version = "1.0.15" %}
+{% set version = "1.0.16" %}
 
 package:
   name: {{ name|lower }}
@@ -7,14 +7,16 @@ package:
 
 
 source:
-  url: https://github.com/maickrau/{{ name }}/files/11663997/{{ name }}.tar.gz
-  sha256: 8df3a3169f5f3ca099b71306b80e39e170413e536a4317cee38851e12ddf1653
+  url: https://github.com/maickrau/{{ name }}/files/13408153/{{ name }}.tar.gz
+  sha256: b51f1013c72baed3f2f725bb605e98eb290df285afae7ba219b1cadd9791a50e
   patches:
     - version.patch
     - osx_availability.patch # [osx]
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('mbg', max_pin="x.x") }}
 
 requirements:
   build:
diff --git a/recipes/mbgc/build.sh b/recipes/mbgc/build.sh
index 2e01843378622..5ba02c5655448 100644
--- a/recipes/mbgc/build.sh
+++ b/recipes/mbgc/build.sh
@@ -8,7 +8,11 @@ export CXXPATH=${BUILD_PREFIX}/include
 export CFLAGS="$CFLAGS -I$BUILD_PREFIX/include"
 export CXXFLAGS="$CFLAGS -I$BUILD_PREFIX/include"
 export LDFLAGS="$LDFLAGS -L$BUILD_PREFIX/lib"
-cp $BUILD_PREFIX/lib/libdeflate.h $BUILD_PREFIX/include/
 cmake ..
-make mbgc
+if [[ "$(uname)" == "Linux" ]]; then
+  make mbgc
+else 
+  make mbgc-noavx
+  mv mbgc-noavx mbgc
+fi
 cp mbgc $PREFIX/bin
diff --git a/recipes/mbgc/meta.yaml b/recipes/mbgc/meta.yaml
index 9176ad183af56..12643af3c5da8 100644
--- a/recipes/mbgc/meta.yaml
+++ b/recipes/mbgc/meta.yaml
@@ -1,23 +1,27 @@
-{% set version = "1.2.1" %}
+{% set version = "2.0.1" %}
 
 package:
   name: mbgc 
   version: {{ version }}
 
 build:
-  skip: True  # [osx]  
-  number: 3
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('mbgc', max_pin="x") }}
 
 source:
   url: https://github.com/kowallus/mbgc/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 7c1e01caa8128fe2467132b6ee53b1c2a1375f3127866f1bf81ed2d129bf206a 
+  sha256: fb422fc89aa95d82dab0b1431b7f220d5f4cdab2dfc1141218e74668461fa530 
 
 requirements:
   build:
     - {{ compiler('cxx') }}
-    - cmake >=3.4
+    - cmake >=3.5
     - make
-    - libdeflate =1.2
+  host:
+    - llvm-openmp  # [osx]
+  run:
+    - llvm-openmp  # [osx]   
     
 test:
   commands:
@@ -33,3 +37,4 @@ about:
 extra:
   maintainers:
     - kowallus
+
diff --git a/recipes/mcl/build.sh b/recipes/mcl/build.sh
index f1f16f74c7170..066d521961a67 100644
--- a/recipes/mcl/build.sh
+++ b/recipes/mcl/build.sh
@@ -1,10 +1,35 @@
 #!/bin/bash
+
 mkdir -p $PREFIX/bin
-export CFLAGS="${CFLAGS} -fcommon"
-export CXXFLAGS="${CXXFLAGS} -fcommon"
-./configure --prefix=$PREFIX --enable-blast
-make
-make install 
 
+export INCLUDE_PATH="${PREFIX}/include"
+export LIBRARY_PATH="${PREFIX}/lib"
+export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
+
+export CFLAGS="${CFLAGS} -O3 -fcommon"
+export CPPFLAGS="${CPPFLAGS} -I${PREFIX}/include"
+
+cd cimfomfa
+./configure --prefix="${PREFIX}" \
+	CC="${CC}" CFLAGS="${CFLAGS}" \
+	CPPFLAGS="${CPPFLAGS}" \
+	LDFLAGS="${LDFLAGS}" \
+	--enable-shared
+make -j"${CPU_COUNT}"
+make install
+make clean
 
+cd ..
+./configure --prefix="${PREFIX}" \
+	CC="${CC}" CFLAGS="${CFLAGS}" \
+	CPPFLAGS="${CPPFLAGS}" \
+	LDFLAGS="${LDFLAGS}" \
+	--enable-rcl
+make -j"${CPU_COUNT}"
+make install
+make clean
 
+# Add back in the mcl/blast scripts.
+# Remove this once the next release re-incorporates them.
+# See https://github.com/micans/mcl/discussions/25
+cp $RECIPE_DIR/scripts/mc* $PREFIX/bin/
diff --git a/recipes/mcl/mcl.patch b/recipes/mcl/mcl.patch
deleted file mode 100644
index c299d30bc9485..0000000000000
--- a/recipes/mcl/mcl.patch
+++ /dev/null
@@ -1,27 +0,0 @@
---- src/alien/oxygen/src/mcxdeblast.bak 2016-10-28 18:33:42.552891732 +0000
-+++ src/alien/oxygen/src/mcxdeblast     2016-10-28 18:34:02.988093841 +0000
-@@ -1,4 +1,4 @@
--#!/usr/local/bin/perl -w
-+#!/usr/bin/env perl
-
- use Getopt::Long;
-
---- scripts/clxdo.bak   2016-10-28 18:36:06.243058808 +0000
-+++ scripts/clxdo       2016-10-28 18:38:09.652159565 +0000
-@@ -83,7 +83,7 @@
- require_num 1 "<cls-file>+"
- mx=$2
- mcxdump -imx $mx --no-values --dump-lines -o - \
--|  /usr/local/bin/perl -ane '$ct{@F-1}++; END { print map { "$_ $ct{$_}\n" } sort { $a <=> $b } keys %ct; }'
-+|  perl -ane '$ct{@F-1}++; END { print map { "$_ $ct{$_}\n" } sort { $a <=> $b } keys %ct; }'
-       ;;
-
-
-@@ -116,7 +116,7 @@
- shift 2
- for mx in $@; do
-       mcxdump -imx $mx --no-values --dump-lines -o - \
--   |  /usr/local/bin/perl -ane '$ct{@F-1}++; END {%i = map { ($_, 1) } grep { $_ >= $ENV{CLXDO_VAL1}; } keys %ct; ($lt, $n_lt, $gq, $n_gq) = (0,0,0,0); for my $x (keys %ct) { if ($i{$x}) { $n_gq += $ct{$x}; $gq += $x * $ct{$x}; } else { $n_lt += $ct{$x}; $lt += $x * $ct{$x} } } print "$n_lt $lt $n_gq $gq\n"; }'
-+   |  perl -ane '$ct{@F-1}++; END {%i = map { ($_, 1) } grep { $_ >= $ENV{CLXDO_VAL1}; } keys %ct; ($lt, $n_lt, $gq, $n_gq) = (0,0,0,0); for my $x (keys %ct) { if ($i{$x}) { $n_gq += $ct{$x}; $gq += $x * $ct{$x}; } else { $n_lt += $ct{$x}; $lt += $x * $ct{$x} } } print "$n_lt $lt $n_gq $gq\n"; }'
- done
-       ;;
diff --git a/recipes/mcl/meta.yaml b/recipes/mcl/meta.yaml
index 00eee9b570ba9..30a984029b69c 100644
--- a/recipes/mcl/meta.yaml
+++ b/recipes/mcl/meta.yaml
@@ -1,25 +1,29 @@
-package:
-  name: mcl
-  version: "14.137"
+{% set name = "MCL" %}
+{% set version = "22.282" %}
+{% set sha256 = "291f35837b6e852743bd87e499c5a46936125dcdf334f7747af92e88ac902183" %}
 
-build:
-  number: 9
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
 
 source:
-  url: http://micans.org/mcl/src/mcl-14-137.tar.gz
-  sha256: b5786897a8a8ca119eb355a5630806a4da72ea84243dba85b19a86f14757b497
-  patches:
-    - mcl.patch
+- url: https://micans.org/mcl/src/mcl-{{ version | replace(".", "-") }}.tar.gz
+  sha256: {{ sha256 }}
+- url: https://micans.org/mcl/src/cimfomfa-22-273.tar.gz
+  sha256: b0f0549fda1d288ddd22a2675581636a6f4bde0f01e956fcf452d0f815b4964f
+  folder: cimfomfa
+
+build:
+  number: 1
+  run_exports:
+     - {{ pin_subpackage('mcl', max_pin=None) }}
 
 requirements:
   build:
     - make
     - {{ compiler('c') }}
-
-
   host:
     - perl
-
   run:
     - perl
     - blast
@@ -27,28 +31,29 @@ requirements:
 test:
   commands:
     - clm -h
-    - clmformat --version
     - clxdo -h
     - mcl --help
-    - mclblastline
-    - mclcm --version
-    - mclpipeline
     - mcx -h
     - mcxarray --version
-    - mcxassemble --version
     - mcxdeblast -h
     - mcxdump --version
     - mcxi -h
     - mcxload --version
     - mcxmap --version
-    - mcxrand --version
     - mcxsubs --version
 
-
-
-
 about:
-  home: http://micans.org/mcl/
-  license: GPL3
+  home: https://micans.org/mcl/
+  license: GPL-3.0-only
+  license_family: GPL
   license_file: LICENSE
   summary: MCL - a cluster algorithm for graphs
+  dev_url: https://github.com/micans/mcl
+  doc_url: https://micans.org/mcl/man/mcl.html
+
+extra:
+  identifiers:
+    - doi:10.1137/040608635
+    - doi:10.1093/nar/30.7.1575
+    - biotools:mcl
+    - usegalaxy-eu:mcl
diff --git a/recipes/mcl/scripts/README b/recipes/mcl/scripts/README
new file mode 100644
index 0000000000000..3266fe9c83f0c
--- /dev/null
+++ b/recipes/mcl/scripts/README
@@ -0,0 +1,16 @@
+These scripts downloaded from
+  <https://micans.org/mcl/src/mcl-14-137/src/alien/oxygen/src/>
+
+They should be removed after being re-introduced in the upcoming release.
+See https://github.com/micans/mcl/discussions/25
+
+
+Only the header of mcxdeblast was changed. The change is as follows:
+
+-#!/usr/local/bin/perl -w
++#!/usr/bin/env perl
++
++use warnings;
+
+- Afif Elghraoui / 0xaf1f
+  2023-12-25
diff --git a/recipes/mcl/scripts/mclblastline b/recipes/mcl/scripts/mclblastline
new file mode 100755
index 0000000000000..2af2d45f41896
--- /dev/null
+++ b/recipes/mcl/scripts/mclblastline
@@ -0,0 +1,58 @@
+#!/usr/bin/env perl
+
+#     Copyright (C) 2003, 2004, 2005, 2006, 2007 Stijn van Dongen
+ #
+# You can redistribute and/or modify this program under the terms of the GNU
+# General Public License;  either version 3 of the License or (at your option)
+# any later  version.
+
+use strict;
+
+$" = ' ';
+
+my $do_help = 0;
+my $cline = "mclpipeline --parser=mcxdeblast --parser-tag=blast";
+
+unless (grep { $_ =~ /^--ass-r[vei]?=/; } @ARGV) {
+   $cline .= " --ass-r=max";
+}
+
+$cline .= " @ARGV";
+
+if (grep { $_ =~ /--(help|apropos)/; } @ARGV) {
+   $do_help = 1;
+}
+elsif (!@ARGV) {
+   $do_help = 1;
+   $cline .= " --help";
+}
+
+if ($do_help) {
+   print <<_help_;
+mcxblastline wraps around the generic mclpipeline script. It fills in the name
+of the BLAST parser (mcxdeblast) and the tag ('blast') used to propagate
+mcxdeblast options through the pipeline to mcxdeblast itself.  You can freely
+use all mclpipeline options other than --parser=<executable> and
+--parser-tag=<str>.
+_help_
+}
+if (system $cline) {
+   print "mcxblastline wrapper: pipeline failed\n";
+   print "cline: $cline\n";
+   exit(1);
+}
+if ($do_help) {
+   print <<_help_;
+________________
+The above options are generic pipeline options.  You can pass any mcxdeblast
+option by inserting the 'blast' tag in front of that particular option. For
+example, the mcxdeblast --score=x option (where x is 'b' or 'e') should
+be passed to mcxblastline as --blast-score=x.
+
+The mcxdeblast --xo-dat option is special; it must *not* be prefixed, as it is
+shared with mclpipeline, as can be seen from the above listing.  The mcxdeblast
+--xi-dat option should not be used, as it encapsulated by the mclpipeline --xi
+option.
+_help_
+}
+
diff --git a/recipes/mcl/scripts/mcxdeblast b/recipes/mcl/scripts/mcxdeblast
new file mode 100755
index 0000000000000..25eea8cc3285d
--- /dev/null
+++ b/recipes/mcl/scripts/mcxdeblast
@@ -0,0 +1,490 @@
+#!/usr/bin/env perl
+
+use warnings;
+use Getopt::Long;
+
+# (c) Copyright 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009 Stijn van Dongen
+# (c) Copyright 2004 Jason Stajich (column output parsing)
+#
+# Other (C)ontributors;
+#     Dinakarpandian Deendayal      (general comments)
+#     Abel Ureta-Vidal              (general comments)
+#     Daniel Lundin                 (regexp tweak, warning)
+#
+# You can redistribute and/or modify this program under the terms of the GNU
+# General Public License;  either version 3 of the License or (at your option)
+# any later version.
+
+#
+# TODO
+#
+#  -  Optionally read from STDIN
+#  -  Require tab file for line-mode={123,packed}
+#
+#  -  Infer hsp_len from long output (?)
+#  -  (Perhaps) enable section parsing ala tribe, for finer control.   
+#  -  $:: usage is arbitrary and ugly. pipe down.
+#  -  Is the m9/seenlfgt combination correct?
+#  -  Check whether m9 output state is correct if errors occur.
+
+
+$^W = 1;
+use strict;
+
+$::mode_sort   = 'o';      # a lphabetical
+                           # o ccurrence
+
+$::mode_score  = 'e';      # e value
+                           # b it
+
+my $line_mode  =  "";      # default is raw mode, not line mode
+$::name_out    =  '-';
+
+$::bcut = 0;
+$::ecut = 0;
+$::rcut = 0;
+
+my $blastfix = "";
+my $addfix = "";
+
+my $user_tabfile = "";
+
+my %line_modes = qw ( abc 1 123 1);
+
+my $obase = "";
+my $stdhandler = 0;
+
+my $help = 0;
+my $m9 = 0;
+my $abc = 0;
+
+
+
+if
+(! GetOptions
+   (  "help"            =>    \$help
+   ,  "apropos"         =>    \$help
+   ,  "sort=s"          =>    \$::mode_sort
+   ,  "ecut=f"          =>    \$::ecut
+   ,  "bcut=f"          =>    \$::bcut
+   ,  "rcut=f"          =>    \$::rcut
+   ,  "score=s"         =>    \$::mode_score
+   ,  "m9"              =>    \$m9
+   ,  "tab=s"           =>    \$user_tabfile
+   ,  "xo-dat=s"        =>    \$addfix
+   ,  "xi-dat=s"        =>    \$blastfix
+   ,  "base=s"          =>    \$obase
+   ,  "stdhandler"      =>    \$stdhandler
+   ,  "line-mode=s"     =>    \$line_mode
+   ,  "out=s"           =>    \$::name_out
+   )
+)
+   {  print STDERR "option processing failed\n";
+      exit(1);
+   }
+
+help() && exit(0) if $help;
+
+die "unknown sort mode <$::mode_sort>"
+   unless $::mode_sort =~ /^[ao]$/;
+die "unknown line mode <$line_mode>"
+   if ($line_mode && !defined($line_modes{$line_mode}));
+die "unknown sort mode <$::mode_score>"
+   unless $::mode_score =~ /^[ebr]$/;
+   
+
+my $fname = shift || die "please submit name of blast file\n";
+$obase = $fname unless $obase;
+
+
+if ($blastfix) {
+   $obase = $fname;
+   if ($fname =~ /\Q.$blastfix\E$/) {
+      $obase =~ s/\Q.$blastfix\E$//;
+   }
+   else {
+      $fname .= ".$blastfix";
+   }
+}
+if ($addfix) {
+   $obase .=  ".$addfix";
+}
+
+my ($gix, $giy);
+$::seenlft = {};
+$::seenrgt = {};
+my $tagTocc = {};
+my $me = "[$0] ";
+my $lc = 0;
+my $fhin = \*STDIN;
+
+if ($fname ne '-') {
+   open(F_BLAST, "<$fname") || die "cannot open $fname\n";
+   $fhin = \*F_BLAST;
+}
+
+$::TAB_user = {};
+
+if ($user_tabfile) {
+   read_tab($user_tabfile, $::TAB_user);
+}
+
+
+$::f_raw = undef;
+my $f_err = undef;
+
+if ($line_mode) {
+   if (!$::name_out || $::name_out eq '-') {
+      $::f_raw = \*STDOUT;
+   }
+   else {
+      open(F_RAW, ">$::name_out") || die "cannot open $::name_out";
+      $::f_raw = \*F_RAW;
+   }
+   $f_err = \*STDERR;
+
+   if ($line_mode eq 'abc') {
+      # print $::f_raw "#aa# (stream abc cookie)\n";
+   }
+   elsif ($line_mode eq '123') {
+      # print $::f_raw "#11# (stream abc cookie)\n";
+   }
+}
+else {
+   if ($stdhandler) {
+      $::f_raw = \*STDOUT;
+      $f_err = \*STDERR;
+   }
+   else {
+      open(F_RAW, ">$obase.raw") || die "cannot open $obase.raw\n";
+      $::f_raw = \*F_RAW;
+      open(F_ERR, ">$obase.err") || die "cannot open $obase.err\n";
+      $f_err = \*F_ERR;
+   }
+}
+
+$::ID = 0;
+
+if ($m9) {
+   munge_linewise($fhin, $::f_raw, $line_mode);
+}
+else {
+   munge_long($fhin, $::f_raw, $line_mode);
+}
+
+close $::f_raw;
+$::CT = scalar keys %$::seenrgt;
+
+
+my $alnum = 0;
+my $occTmisc = {};
+
+if (!$user_tabfile && !$line_mode) {
+   open(F_HDR, ">$obase.hdr") || die "cannot open $obase.hdr\n";    # header
+   open(F_MAP, ">$obase.map") || die "cannot open $obase.idx\n";    # map file
+   open(F_TAB, ">$obase.tab") || die "cannot open $obase.idx\n";    # indices
+   print F_TAB "#<mapped index> <tag>\n";
+   if ($::mode_sort eq 'o') {
+      print F_TAB "# sort mode is by occurrence\n";
+   }
+   elsif ($::mode_sort eq 'a') {
+      print F_TAB "# sort mode is alphabetical\n";
+   }
+   if ($::mode_sort eq 'a') {
+      for (sort {$::a cmp $::b; } keys %$tagTocc) {
+         print F_TAB "$alnum $_\n";
+         $occTmisc->{$tagTocc->{$_}} = [ $alnum, $_ ];
+         $alnum++;
+      }
+      print STDERR "Index [$obase.tab] is sorted by alphabetic order\n";
+   }
+   elsif ($::mode_sort eq 'o' || 1) {
+      for (sort {$tagTocc->{$::a} <=> $tagTocc->{$::b}; } keys %$tagTocc) {
+         print F_TAB "$alnum $_\n";
+         $occTmisc->{$tagTocc->{$_}} = [ $alnum, $_ ];
+         $alnum++;
+      }
+      print STDERR "Index [$obase.tab] is sorted by occurrence order\n";
+      print STDERR "Primary and secondary occurrences are considered equal\n";
+   }
+   my $ct = keys %$occTmisc;
+   print F_MAP "(mclheader\nmcltype matrix\ndimensions $ct", 'x',
+               "$ct\n)\n(mclmatrix\nbegin\n";
+   for (sort {$::a <=> $::b; } keys %$occTmisc) {
+      # print F_MAP "$_ ", $occTmisc->{$_}[0], " ", $occTmisc->{$_}[1], "\n";
+      print F_MAP  "$_ $occTmisc->{$_}[0] \$\n";
+   }
+   print F_MAP ")\n";
+
+   print F_HDR "(mclheader\nmcltype matrix\ndimensions ";
+   print F_HDR $::ID . 'x' . $::ID;
+   print F_HDR "\n)\n";
+   close F_TAB;
+   close F_HDR;
+   close F_MAP;
+}
+
+
+my $n_err = 0;
+for (sort keys %$::seenrgt) {
+   if (!$::seenlft->{$_}) {
+      print $f_err "secondary element $_ not seen as primary element\n";
+      print $f_err "emergency measure: added the element to the primary list\n";
+      $n_err++;
+   }
+}
+
+if ($n_err) {
+   print STDERR $me, "$n_err secondary elements not seen as primary element\n";
+   print STDERR $me, "I added all of them\n";
+   print STDERR $me, "There were $::CT elements in all\n";
+}
+else {
+   print STDERR $me,
+   "all secondary elements were also seen as primary elements (check ok)\n";
+}
+
+
+sub munge_linewise {
+
+   my ($fh_in, $fh_raw, $line_mode) = @_;
+
+   my $gix_prev = "";
+
+   while (<$fh_in>) {
+
+      next if /^#/;
+      chomp;
+      my $sc_abc = 0;
+
+      my ($gix, $giy, $percent_id, $hsp_len, $mismatches, $gapsm,
+          $qstart, $qend,$hstart, $hend, $e, $b)
+          =
+          split;
+
+      my $s = 0;
+
+      my $idx = getid($gix, 1);
+      next unless $idx >= 0;
+
+      if ($gix_prev ne $gix) {
+          if (!$line_mode) {
+             if ($gix_prev) {
+               print $fh_raw "\$\n";
+             }
+             if( $idx >= 0 ) {
+               print $fh_raw "$idx ";
+             }
+         }
+      }
+      my $idy = getid($giy, 0);
+
+      $s = getscore($e, $b, $hsp_len);
+
+      if ($idy >= 0) {
+          if (!$line_mode) {
+             print $fh_raw "$idy:$s ";
+          }
+          else {
+             print $fh_raw "$gix\t$giy\t$s\n";
+          }
+      }
+      $gix_prev = $gix;
+   }
+
+   if ($gix_prev) {
+      print $fh_raw "\$\n" if !$line_mode;
+   }
+}
+
+
+sub munge_long {
+
+   my ($fh_in, $fh_raw, $line_mode) = @_;
+
+   my $need_query = 1;
+   my $need_hits = 2;
+   my $need_gi = 3;
+
+   my $state = $need_query;
+
+   while (<$fh_in>) {
+      $lc++;
+      chomp;
+      if (/^Query=\s+gi\|(\d+(_\d+)?)/ || /^Query=\s+(\S+).*$/) {
+# warn "STATE query $1\n";
+         if ($state != $need_query) {
+            print STDERR "Unexpected 'Query=' line\n";
+         }
+         $gix = $1;
+         my $idx = getid($gix, 1);
+
+         if ($idx >= 0) {
+            print $fh_raw "$idx " if !$line_mode;
+         }
+         $state = $need_hits;
+      }
+      elsif (/^Query=/) {
+         print STDERR "Query string not recognized: $_\n";
+      }
+      elsif
+      ($state == $need_hits && /sequences producing significant alignments/i) {
+         $state = $need_gi;
+# warn "STATE significant\n";
+      }
+      elsif ($state == $need_hits && /no hits found/i) {
+         print STDERR "no hits found for gi $gix\n";
+         print $fh_raw "\$\n" if !$line_mode;
+         $state = $need_query;
+      }
+      elsif
+      (  $state == $need_gi
+      && ! /^>/
+      && (/^gi\|(\d+(_\d+)?)/ || /^(\S+)\s+.*$/)
+      )
+      {  $giy = $1;
+         my $idy = getid($giy, 0);
+         my ($s, $b, $e);
+
+         if (/(\S+)\s+(\S+)\s*$/) {
+            $b = +$1;
+            $e = +$2;
+         }
+         else {
+            print STDERR "no scores in line $lc [$_]!\n";
+            next;
+         }
+
+         $s = getscore($e, $b, 0);
+
+         if ($idy >= 0) {               # fixme, void or explain.
+            if (!$line_mode) {
+               print $fh_raw "$idy:$s ";
+            }
+            else {
+               print $fh_raw "$giy\t$gix\t$s\n";
+            }
+         }
+      }
+      elsif (/^\s*$/) {
+         # paragraph skip does not change state, including the $need_gi case.
+      }
+      elsif (/(Statistics|Parameters):/) {
+         $state = $need_query;
+         # this provides WU-blast compatibility.
+      }
+      elsif ($state == $need_gi) {
+         print $fh_raw "\$\n" if !$line_mode;
+         $state = $need_query;
+      }
+   }
+
+   if ($state == $need_gi) {
+      print $f_err "run ended while expecting more secondary scores\n";
+      print STDERR "run ended while expecting more secondary scores\n";
+      print $fh_raw "\$\n" if !$line_mode;
+   }
+}
+
+
+
+
+sub read_tab {
+   my $file = shift;
+   my $tab = shift;
+   open (U_TAB, "<$file") || die "cannot open $file\n";
+   while (<U_TAB>) {
+      if (/^\s*#/) {
+         next;
+      }
+      else {
+         if (/^(\d+)\s+(.*)/) {
+            $tab->{$2} = $1;
+         }
+         else {
+            print STDERR "___ cannot parse line: $_";
+         }
+      }
+   }
+}
+
+
+sub getscore {
+   my ($e, $b, $hl) = @_;
+   my $s = 0;
+
+   if ($::mode_score eq 'e') {
+      $e = "1$e" if $e =~ /^e/;
+      $s = $e > 0 ? -log($e)/log(10) : 200;
+      if ($s > 200) {
+         $s = 200;
+      }
+      $s = $s > $::ecut ? $s : 0;
+   }
+   elsif ($::mode_score eq 'b') {
+      $s = $b > $::bcut ? $b : 0;
+   }
+   elsif ($::mode_score eq 'r' && $hl) {
+      $s = $b / $hl;
+      $s = $s > $::rcut ? $s : 0;
+   }
+   return $s;
+}
+
+
+sub getid {
+   my ($gi, $is_a_query) = @_;
+   my $id = -1;
+
+   if ($user_tabfile) {
+      if (defined($::TAB_user->{$gi})) {
+         $id = $::TAB_user->{$gi};
+      }
+      else {
+         print STDERR "___ no user tab entry for label <$gi>\n";
+         return -1;
+      }
+   }
+   else {
+      if (!exists($tagTocc->{$gi})) {
+# warn "$is_a_query $gi <-> $::ID\n";
+         $tagTocc->{$gi} = $::ID++;
+      }
+      $id = $tagTocc->{$gi};
+   }
+
+   $::seenrgt->{$id}++;
+   if ($is_a_query) {
+      $::seenlft->{$id}++;
+   }
+   return $id;
+}
+
+
+sub help {
+   print <<_help_;
+Usage: mcxdeblast <options> file-name
+where file-name is in BLAST NCBI format.
+mcxdeblast will create
+   base.hdr    [to be read by mcxassemble]
+   base.raw    [to be read by mcxassemble]
+   base.map    [to be read by mcxassemble]
+   base.tab    [to be read by clmformat]
+   base.err    [error log]
+where base is derived from or equal to file-name
+Options:
+   --m9              Expect column (-m 9) input.
+   --line-mode=abc   Output simple ID1 ID2 SCORE format.
+   --score=<b|e|r>   Use bit scores, E-values,
+                        or bit scores normalized by hsp-length
+   --sort=<a|o>      Use alphabetic sorting (default) or occurrence.
+   --tab=<fname>     Use user-supplied tab file.
+   --xi-dat=<suf>    Strip <suf> from file-name to create output base name.
+   --xo-dat=<suf>    Add <suf> to base name.
+   --bcut=<val>      Ignore hits below bit score <val>
+   --ecut=<val>      Ignore hits below E-value <val>
+   --rcut=<val>      Ignore hits below raw value <val>
+   --out=<fname>     Output file name ('-' for STDOUT)
+_help_
+}
+
diff --git a/recipes/me-pcr/build.sh b/recipes/me-pcr/build.sh
new file mode 100644
index 0000000000000..eb50a1af2b62b
--- /dev/null
+++ b/recipes/me-pcr/build.sh
@@ -0,0 +1,10 @@
+#!/bin/bash
+
+make CC=$CC CPP=$CXX -C src/ -f makefile
+
+mkdir -p $PREFIX/share/me-pcr/
+cp README.txt $PREFIX/share/me-pcr/
+
+mkdir -p $PREFIX/bin
+chmod +x src/me-PCR
+cp src/me-PCR $PREFIX/bin/
diff --git a/recipes/me-pcr/meta.yaml b/recipes/me-pcr/meta.yaml
new file mode 100644
index 0000000000000..76450d25ec72c
--- /dev/null
+++ b/recipes/me-pcr/meta.yaml
@@ -0,0 +1,50 @@
+{% set name = "me-pcr" %}
+{% set version = "1.0.6" %}
+{% set sha256 = "61e84af827ef99de245a7a711746e0b0b905e40f5adaf5e34da936a486c8b0e7" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://web.archive.org/web/20100708193215/http://genome.chop.edu/mePCR/me-PCR-{{ version }}.zip
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}    
+
+requirements:
+  build:
+    - make
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+
+test:
+  commands:
+    - me-PCR 2>&1 | grep "Multithreaded Electronic PCR"
+    # - me-PCR test/test.sts test/test.fa
+
+about:
+  home: https://web.archive.org/web/20100708193215/http://genome.chop.edu/mePCR/
+  license: Public Domain
+  summary: Multithreaded Electronic PCR (in-silico PCR) based on NCBI e-PCR.
+  description: |
+    Multithreaded Electronic PCR (me-PCR) was developed by Kevin Murphy at
+    Children's Hospital of Philadelphia. It is described in Murphy et al
+    (2004) https://doi.org/10.1093/bioinformatics/btg466 and was originally
+    available from http://genome.chop.edu/mePCR (defunct). It was based on the
+    public domain NCBI tool e-PCR by Gregory D. Schuler, described in Schuler
+    (1997) https://doi.org/10.1101/gr.7.5.541 which was origially availble
+    from ftp://ncbi.nlm.nih.gov/pub/schuler/e-PCR/ (defunct). The final
+    release of me-PCR was v1.0.6 (2008-02-18), and the author wrote that in
+    general NCBI e-PCR should be used instead having been improved greatly
+    over the years. The NCBI retired and withdrew the e-PCR webservice and
+    command line tool on 2017-06-28, suggesting the online-only tool
+    Primer-BLAST instead. However, this is not suitable for offline high
+    throughput usage. See also Jim Kent's isPCR (aslo available in BioConda).
+
+extra:
+  identifiers:
+    - biotools:{{ name }}
diff --git a/recipes/medaka/build.sh b/recipes/medaka/build.sh
index a817fd95cb411..a17d134c7c243 100644
--- a/recipes/medaka/build.sh
+++ b/recipes/medaka/build.sh
@@ -2,7 +2,7 @@
 
 export INCLUDE_PATH="${PREFIX}/include"
 export LIBRARY_PATH="${PREFIX}/lib"
-export LDFLAGS="-L${PREFIX}/lib"
+export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
 
 export CFLAGS="-I${PREFIX}/include ${LDFLAGS}"
 
@@ -13,4 +13,4 @@ sed -i.bak "s/'build_ext': HTSBuild//" setup.py
 sed -i.bak 's/extra_objects.*//' build.py
 sed -i.bak 's/^libraries=\[/libraries=\["hts",/' build.py
 
-$PYTHON -m pip install . -vv
+$PYTHON -m pip install . --no-deps --ignore-installed -vvv
diff --git a/recipes/medaka/conda_build_config.yaml b/recipes/medaka/conda_build_config.yaml
new file mode 100644
index 0000000000000..f45b292d8ac64
--- /dev/null
+++ b/recipes/medaka/conda_build_config.yaml
@@ -0,0 +1,9 @@
+# Required to support Tensorflow v2.10, which is the only version
+# supported by Medaka. The pinning of older versions of libcurl and
+# openssl will cause installation of outdated packages and likely
+# lead solver conflicts in the future. Please review this on future
+# releases, especially if support for TensorFlow 2.11+ is added.
+libcurl:
+  - 7
+openssl:
+  - 1.1.1
diff --git a/recipes/medaka/meta.yaml b/recipes/medaka/meta.yaml
index 34e6600a20be8..39da07aeeb982 100644
--- a/recipes/medaka/meta.yaml
+++ b/recipes/medaka/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "Medaka" %}
-{% set version = "1.8.0" %}
-{% set sha256 = "bc6c10058d3cad662b8bccdc0af4f1e17424cf117299dce8e44ec8c87c4472ec" %}
+{% set version = "1.11.3" %}
+{% set sha256 = "940568212d152f573270967b02f6e841561cc43138b6aa15783c371457fef7b9" %}
 # Bot PRs - Always review requirements.txt for new release
 
 package:
@@ -8,19 +8,20 @@ package:
   version: {{ version }}
 
 source:
-  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/medaka-{{ version }}.tar.gz
+  url: https://github.com/nanoporetech/medaka/releases/download/v{{ version }}/medaka-{{ version }}.tar.gz
   sha256: {{ sha256 }}
   patches:
     - patch
 
 build:
   number: 0
-  skip: True  # [py < 38]
   entry_points:
     - medaka = medaka.medaka:main
     - medaka_counts = medaka.medaka_counts:main
     - medaka_data_path = medaka.common:print_data_path
     - medaka_version_report = medaka:report_binaries
+  run_exports:
+    - {{ pin_subpackage('medaka', max_pin='x') }}
 
 requirements:
   build:
@@ -29,8 +30,8 @@ requirements:
   host:
     - python
     - pip
-    - cffi ==1.15.0
-    - htslib
+    - cffi >=1.15.0
+    - htslib >=1.14
     - libcurl
     - openssl
     - bzip2
@@ -38,26 +39,30 @@ requirements:
     - zlib
   run:
     - python
-    - cffi ==1.15.0
+    - cffi >=1.15.0
     - grpcio
     - h5py
     - intervaltree
-    - tensorflow >=2.8.0,<2.9.dev0
+    # Please review the need for the conda_build_config.yaml
+    # if a more recent version of Tensorflow is supported.
+    - tensorflow >=2.10,<2.11
     - numpy >=1.21.6
     - nomkl  # [osx]
     - mappy
     - ont-fast5-api
     - parasail-python
-    - pyspoa >=0.0.3
+    - pyabpoa
+    - pyspoa >=0.2.1
     - pysam >=0.16.0.1
     - python-edlib
     - requests
-    - samtools >=1.17
-    - bcftools >=1.17
-    - minimap2 >=2.26
-    - htslib
+    - samtools >=1.14
+    - bcftools >=1.14
+    - minimap2 >=2.17
+    - htslib >=1.14
     - libcurl
     - openssl
+    - wurlitzer
 
 test:
   imports:
@@ -77,8 +82,6 @@ about:
   dev_url: https://github.com/nanoporetech/medaka
 
 extra:
-  recipe-maintainers:
-    - cjw85
   identifiers:
     - usegalaxy-eu:medaka_consensus
     - biotools:medaka
diff --git a/recipes/megahit/linux-aarch64-support-pr-368.patch b/recipes/megahit/linux-aarch64-support-pr-368.patch
new file mode 100644
index 0000000000000..01b9f2d556f98
--- /dev/null
+++ b/recipes/megahit/linux-aarch64-support-pr-368.patch
@@ -0,0 +1,74 @@
+From 296ad6b5359ac5072a97fe0b7f72cad08031542f Mon Sep 17 00:00:00 2001
+From: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
+Date: Wed, 27 Mar 2024 15:07:02 +0200
+Subject: [PATCH 1/5] Add support for non-x86_64 architectures (e.g. Linux
+ ARM64)
+
+Fixes https://github.com/voutcn/megahit/issues/320
+Based on: https://github.com/voutcn/megahit/pull/329
+
+Preserves the x86_64 specifics when building on x86_64 machine
+
+Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
+---
+ CMakeLists.txt           | 8 ++++++--
+ src/kmlib/kmrns.h        | 2 ++
+ src/utils/cpu_dispatch.h | 6 ++++++
+ 3 files changed, 14 insertions(+), 2 deletions(-)
+
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index 172a03d..d21b2d3 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -73,8 +73,12 @@ add_executable(megahit_core_popcnt ${OTHER_SOURCE} ${ASMBL_SOURCE} ${IDBA_SOURCE
+         ${CX1_SOURCE} ${TOOLKIT_SOURCE})
+ add_executable(megahit_core_no_hw_accel ${OTHER_SOURCE} ${ASMBL_SOURCE} ${IDBA_SOURCE} ${SDBG_SOURCE} ${LCASM_SOURCE}
+         ${SEQ_SOURCE} ${CX1_SOURCE} ${TOOLKIT_SOURCE})
+-set_target_properties(megahit_core PROPERTIES COMPILE_FLAGS "-mbmi2 -DUSE_BMI2 -mpopcnt")
+-set_target_properties(megahit_core_popcnt PROPERTIES COMPILE_FLAGS "-mpopcnt")
++
++if (CMAKE_SYSTEM_PROCESSOR MATCHES "(x86_64)|(amd64)|(AMD64)")
++    set_target_properties(megahit_core PROPERTIES COMPILE_FLAGS "-mbmi2 -DUSE_BMI2 -mpopcnt")
++    set_target_properties(megahit_core_popcnt PROPERTIES COMPILE_FLAGS "-mpopcnt")
++endif ()
++
+ 
+ if (STATIC_BUILD)
+     # TODO dirty
+diff --git a/src/kmlib/kmrns.h b/src/kmlib/kmrns.h
+index 9f2e9dd..0352858 100644
+--- a/src/kmlib/kmrns.h
++++ b/src/kmlib/kmrns.h
+@@ -8,7 +8,9 @@
+ #include <stdint.h>
+ #include <stdio.h>
+ #include <stdlib.h>
++#if defined(__x86_64__)
+ #include <x86intrin.h>
++#endif
+ #include <vector>
+ 
+ namespace kmlib {
+diff --git a/src/utils/cpu_dispatch.h b/src/utils/cpu_dispatch.h
+index ec01bb6..44ba1e2 100644
+--- a/src/utils/cpu_dispatch.h
++++ b/src/utils/cpu_dispatch.h
+@@ -5,6 +5,7 @@
+ #ifndef MEGAHIT_CPU_DISPATCH_H
+ #define MEGAHIT_CPU_DISPATCH_H
+ 
++#if defined(__x86_64__)
+ inline bool HasPopcnt() {
+   unsigned eax, ebx, ecx, edx;
+ #ifdef _MSC_VER
+@@ -32,5 +33,10 @@ inline bool HasBmi2() {
+ #endif
+   return ebx >> 8U & 1U;
+ }
++#else
++inline bool HasPopcnt() { return false; }
++inline bool HasBmi2() { return false; }
++#endif
++
+ 
+ #endif  // MEGAHIT_CPU_DISPATCH_H
\ No newline at end of file
diff --git a/recipes/megahit/meta.yaml b/recipes/megahit/meta.yaml
index cdc6d877dde6a..35673ec2df9ee 100644
--- a/recipes/megahit/meta.yaml
+++ b/recipes/megahit/meta.yaml
@@ -8,12 +8,16 @@ package:
 source:
   sha256: '{{sha256}}'
   url: https://github.com/voutcn/megahit/archive/v{{version}}.tar.gz
+  patches:
+    - linux-aarch64-support-pr-368.patch
 
 build:
-  number: 4
+  number: 5
   # TODO test fails on osx without visible error.
   # Feel free to fix and enable again.
   skip: true  # [osx]
+  run_exports:
+    - {{ pin_subpackage('megahit', max_pin='x') }}
 
 requirements:
   build:
@@ -45,6 +49,8 @@ about:
     metagenomics assembly via succinct de Bruijn graph
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:megahit
     - doi:10.1093/bioinformatics/btv033
diff --git a/recipes/megalodon/meta.yaml b/recipes/megalodon/meta.yaml
index de3fb1f4ee6e7..c619becf36135 100644
--- a/recipes/megalodon/meta.yaml
+++ b/recipes/megalodon/meta.yaml
@@ -1,55 +1,58 @@
 {% set name = "megalodon" %}
-{% set version = "2.4.1" %}
-{% set hash = "c67de21120407258019498cd704892573f687576edbb3d4d4c5bb4b48aa56e7c" %}
+{% set version = "2.5.0" %}
+{% set sha256 = "60ad1f1191b86d9a1423dcb9c934c7577cf1ce083689337646937be2538953a3" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://github.com/nanoporetech/megalodon/archive/{{ version }}.tar.gz
-  sha256: {{ hash }}
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/megalodon-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
 
 build:
-  number: 2
+  skip: true  # [py2k or py < 36]
   entry_points:
     - megalodon = megalodon.__main__:_main
     - megalodon_extras = megalodon_extras.__main__:_main
-  skip: True  # [py2k or py == 39]
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: {{ PYTHON }} -m pip install . --no-deps -vv
+  number: 1
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   build:
     - {{ compiler('c') }}
   host:
-    - cython
     - python
+    - setuptools >=38.3
+    - cython >=0.25.2,<3
+    - pyscaffold >=3.2a0,<3.3a0
     - pip
     - numpy >=1.9.0
-    - setuptools  # [osx]
   run:
     - python
-    - setuptools
     - h5py >=2.2.1
     - numpy >=1.9.0
     - scipy >=1.1.0
     - mappy >=2.16
     - pysam >=0.15
     - ont-fast5-api >=3.2
-    - tqdm
+    - tqdm >=2.17
     - scikit-learn
     - seaborn
 
 test:
   imports:
     - megalodon
+    - megalodon_extras
   commands:
     - megalodon --help
     - megalodon_extras --help
 
 about:
   home: https://github.com/nanoporetech/megalodon
-  license: Mozilla Public License 2.0
+  license: Oxford Nanopore Technologies PLC. Public License Version 1.0
   license_family: OTHER
   license_file: LICENCE.txt
   summary: Nanopore modified base and sequence variant detection.
@@ -57,5 +60,8 @@ about:
   dev_url: https://github.com/nanoporetech/megalodon
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   recipe-maintainers:
     - marcus1487
+    - npavlovikj
diff --git a/recipes/megan/meta.yaml b/recipes/megan/meta.yaml
index b630ebb5fdfad..d3014d47e4e3c 100644
--- a/recipes/megan/meta.yaml
+++ b/recipes/megan/meta.yaml
@@ -1,13 +1,13 @@
 {% set name = "megan" %}
-{% set version = "6.24.20" %}
+{% set version = "6.25.9" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://software-ab.cs.uni-tuebingen.de/download/megan6/MEGAN_Community_unix_{{ version|replace(".", "_") }}.sh   # [linux]
-  sha256: 4eaf7797b4a2b9cdc2157b2780810504b9b8b539dd81bb6130f4b69e453f009b   # [linux]
+  url: https://maira.cs.uni-tuebingen.de/download/megan6/MEGAN_Community_unix_{{ version|replace(".", "_") }}.sh   # [linux]
+  sha256: 09975351baff29e620d49f14145bde7840ec5d58828ba9ddf187c9ba54e46b4b   # [linux]
 #   url: https://software-ab.informatik.uni-tuebingen.de/download/megan6/MEGAN_Community_macos_{{ version|replace(".", "_") }}.dmg   # [osx]
 #   sha256: dd843e823f358f496834a2034e1b638e9602ba83251a5f0542f20b0d22d7dc70   # [osx]
 
@@ -15,6 +15,8 @@ build:
 #  detect_binary_files_with_prefix: true
   number: 0
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage("megan", max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/mehari/meta.yaml b/recipes/mehari/meta.yaml
index 0481337227d51..4dce1d8acc046 100644
--- a/recipes/mehari/meta.yaml
+++ b/recipes/mehari/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.6.2" %}
-{% set sha256 = "63e321b485ce8f4458499f49155d5b75148bf7f9a0e2f81b0be78ec98c332eea" %}
+{% set version = "0.25.5" %}
+{% set sha256 = "4986b6249fdc4e726e9494c55340234f50307fc4442e4683ecf18c1bd6ace8fd" %}
 
 package:
   name: mehari
@@ -8,9 +8,11 @@ package:
 build:
   skip: True  # [osx]
   number: 0
+  run_exports:
+    - {{ pin_subpackage("mehari", max_pin="x.x") }}
 
 source:
-  url: https://github.com/bihealth/mehari/archive/v{{ version }}.tar.gz
+  url: https://github.com/varfish-org/mehari/archive/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
 
 requirements:
@@ -36,6 +38,6 @@ test:
     - mehari -h
 
 about:
-  home: https://github.com/bihealth/mehari
+  home: https://github.com/varfish-org/mehari
   license: MIT
   summary: VEP-like tool for sequence ontology and HGVS annotation of VCF files written in Rust.
diff --git a/recipes/melon/meta.yaml b/recipes/melon/meta.yaml
new file mode 100644
index 0000000000000..1859cf993abd9
--- /dev/null
+++ b/recipes/melon/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "melon" %}
+{% set version = "0.1.5" %}
+
+package:
+  name: '{{ name|lower }}'
+  version: '{{ version }}'
+
+source:
+  url: https://github.com/xinehc/melon/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 4cd77a0262e589c125627d89fea9a340ccbf0dc53b67bfc40f907008c95864da
+
+build:
+  noarch: python
+  number: 0
+  script: '{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv'
+  run_exports:
+    - {{ pin_subpackage('melon', max_pin='x') }}
+
+requirements:
+  host:
+    - pip
+    - python >=3.7
+  run:
+    - python >=3.7
+    - diamond >=2.1.8
+    - minimap2 >=2.26
+    - kraken2
+    - seqkit
+    - numpy
+    - scipy
+    - tqdm
+
+test:
+    imports:
+      - melon
+    commands:
+      - melon -h
+
+about:
+  home: https://github.com/xinehc/melon
+  license: MIT
+  license_family: MIT
+  summary: 'Melon: metagenomic long-read-based taxonomic identification and quantification'
+
+extra:
+  recipe-maintainers:
+    - xinehc
diff --git a/recipes/meme/build.sh b/recipes/meme/build.sh
index 58e05134d1b50..d421c84749228 100644
--- a/recipes/meme/build.sh
+++ b/recipes/meme/build.sh
@@ -5,19 +5,17 @@ export MEME_ETC_DIR=${PREFIX}/etc
 #HOME=/tmp cpanm CGI::Application
 #HOME=/tmp cpanm XML::Parser::Expat --configure-args "EXPATLIBPATH=$PREFIX/lib" --configure-args "EXPATHINCPATH=$PREFIX/include"
 
-autoconf
-autoheader
+autoreconf -i
 
 perl scripts/dependencies.pl
 
 ./configure CC="${CC}" \
-	CFLAGS="-O3 -I${PREFIX}/include" \
+	CFLAGS="${CFLAGS} -O3 -I${PREFIX}/include" \
 	LDFLAGS="${LDFLAGS} -L${PREFIX}/lib" \
 	--prefix="${PREFIX}" \
 	--enable-build-libxml2 \
 	--enable-build-libxslt
 
-make clean
 make AM_CFLAGS='-DNAN="(0.0/0.0)"' -j4
 
 # tests will only work inside the build dir, but
@@ -27,8 +25,9 @@ make AM_CFLAGS='-DNAN="(0.0/0.0)"' -j4
 # make test
 
 make install
+make clean
 
-ln -s ${PREFIX}/libexec/${PKG_NAME}-${PKG_VERSION}/* ${PREFIX}/bin/
+ln -sf ${PREFIX}/libexec/${PKG_NAME}-${PKG_VERSION}/* ${PREFIX}/bin/
 
 # if building with python3,
 # modify meme-chip script to use python3 version of DREME
diff --git a/recipes/meme/meta.yaml b/recipes/meme/meta.yaml
index 4157eeb981b4c..c2f07609794e0 100644
--- a/recipes/meme/meta.yaml
+++ b/recipes/meme/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "MEME" %}
-{% set version = "5.5.3" %}
-{% set sha256 = "203abf6d89da15f346e6cbf25795fb0659020755df54e8b4b69cb0d4e636e8a1" %}
+{% set version = "5.5.5" %}
+{% set sha256 = "bebb4a176e72d62e3a2d5ba5f22439185bbc4bbf4769604fbca12dff8e1f739f" %}
 
 package:
   name: {{ name|lower }}
@@ -13,17 +13,21 @@ source:
 build:
   number: 0
   detect_binary_files_with_prefix: True
+  run_exports:
+    - {{ pin_subpackage("meme", max_pin="x") }}
 
 requirements:
   build:
     - {{ compiler('c') }}
     - make
     - autoconf
+    - automake
+    - libtool
   host:
     - nodejs >=16.4.1
     - openmpi
     - yaml
-    - icu
+    - icu >=72.1,<73.0a0
     - ghostscript
     - zlib
     - xz
diff --git a/recipes/memote/meta.yaml b/recipes/memote/meta.yaml
new file mode 100644
index 0000000000000..ee4d6467bc3cd
--- /dev/null
+++ b/recipes/memote/meta.yaml
@@ -0,0 +1,77 @@
+{% set name = "memote" %}
+{% set version = "0.17.0" %}
+{% set sha256 = "b61b222c6fe7719f0f916f01a5c68679567bad8884ed36eb634311ddbc565f19" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  entry_points:
+    - memote = memote.suite.cli.runner:cli
+  script:
+    - {{ PYTHON }} -m pip install --no-deps -vv .
+  noarch: python
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("memote", max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.9,<=3.11
+    - setuptools >=40.6.0
+    - versioneer-518
+    - wheel
+    - versioneer
+    - pip
+  run:
+    - click
+    - click-configfile
+    - click-log
+    - cobra >=0.28
+    - cookiecutter
+    - depinfo >=2.2
+    - future
+    - git
+    - gitpython
+    - importlib_resources
+    - jinja2
+    - jsonschema
+    - numpy
+    - numpydoc
+    - optlang >=1.8
+    - pandas
+    - pandera
+    - pygithub <2
+    - pylru
+    - pytest
+    - python >=3.9,<=3.11
+    - requests
+    - ruamel.yaml
+    - six
+    - sqlalchemy
+    - sympy
+
+test:
+  imports:
+    - memote
+  commands:
+   - memote --help
+   - pip check
+  requires:
+    - pip
+
+about:
+  home: https://memote.readthedocs.io/
+  summary: the genome-scale metabolic model test suite
+  license: Apache-2.0
+  license_file: LICENSE
+
+
+extra:
+  recipe-maintainers:
+    - Midnighter
diff --git a/recipes/mercat2/meta.yaml b/recipes/mercat2/meta.yaml
index dc573dcd4aef8..9de650d4cebc2 100644
--- a/recipes/mercat2/meta.yaml
+++ b/recipes/mercat2/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "mercat2" %}
-{% set version = "1.0" %}
+{% set version = "1.4.1" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,27 +7,30 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 30dd54de28e8648c83c6ed0a773934655d8b62ffc3a0541864848d9e618e4bf0
+  sha256: 5a090b19db6beecae8d3a1f2014a239b306fa428e92cc8f02e98e0e4b4a89d31
 
 build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage('mercat2', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - python <3.10
+    - python >=3.9
     - setuptools
   run:
-    - python <3.10
-    - grpcio
+    - python >=3.9
+    - grpcio ==1.43
     - fastqc
     - fastp
     - prodigal
     - ray-core
     - ray-dashboard
     - ray-default
+    - ray-tune
     - configargparse
     - dominate
     - humanize
@@ -37,10 +40,11 @@ requirements:
     - psutil
     - scikit-learn
     - metaomestats
-    - scikit-bio
+    - scikit-bio ==0.5.7
     - scipy ==1.8.1
     - python-kaleido
 
+
 test:
   imports:
     - mercat2_lib
diff --git a/recipes/merge-gbk-records/meta.yaml b/recipes/merge-gbk-records/meta.yaml
new file mode 100644
index 0000000000000..38aaf9585a484
--- /dev/null
+++ b/recipes/merge-gbk-records/meta.yaml
@@ -0,0 +1,42 @@
+{% set name = "merge-gbk-records" %}
+{% set version = "0.2.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: "4e204552a87787e1fbe3eba629c0e05dbe0cd6bddc81c256cc813066d67b8be4"
+
+build:
+  noarch: python
+  number: 0
+  script: "{{ PYTHON }} -m pip install . --no-deps -vv"
+  run_exports:
+    - {{ pin_subpackage("merge-gbk-records", max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.8
+    - pip
+  run:
+    - python >=3.7
+    - biopython >=1.79
+
+test:
+  commands:
+    - merge-gbk-records --help
+
+about:
+  home: http://github.com/kblin/{{ name }}
+  license: Apache-2.0
+  license_family: Apache
+  license_file: LICENSE
+  summary: 'Turn multiple GenBank records (either in multiple files or a single multi-record file) into a single record'
+  description: |
+    A small script to turn multiple GenBank records (either in multiple files or a single multi-record file) into a 
+    single record.
+    Sequences are merged by concatenating them in order, and putting a spacer sequence between them.
+    Spacer sequence length can be given in kbp. It is possible to pick an all-N spacer, or using a spacer
+    consisting of all-frame stop codons.
diff --git a/recipes/merqury/meta.yaml b/recipes/merqury/meta.yaml
index 9949181ef7d8d..583ae7429b8e1 100644
--- a/recipes/merqury/meta.yaml
+++ b/recipes/merqury/meta.yaml
@@ -11,8 +11,10 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 1
+  number: 2
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage("merqury", max_pin='x.x') }}  
 
 requirements:
   run:
@@ -25,6 +27,8 @@ requirements:
     - bedtools  >=2.29.2
     - samtools  >=1.10
     - mscorefonts
+    - gawk
+    - sed
 
 test:
   commands:
diff --git a/recipes/merquryfk/build.sh b/recipes/merquryfk/build.sh
new file mode 100644
index 0000000000000..9f9bb40388aae
--- /dev/null
+++ b/recipes/merquryfk/build.sh
@@ -0,0 +1,15 @@
+#!/bin/bash
+export LDFLAGS="$LDFLAGS -L$PREFIX/lib"
+export CPATH=${PREFIX}/include
+
+make
+mkdir -p $PREFIX/bin
+
+cp HAPmaker  $PREFIX/bin
+cp ASMplot $PREFIX/bin
+cp CNplot $PREFIX/bin
+cp HAPplot $PREFIX/bin
+cp MerquryFK $PREFIX/bin
+cp KatComp $PREFIX/bin
+cp KatGC $PREFIX/bin
+cp PloidyPlot $PREFIX/bin
diff --git a/recipes/merquryfk/meta.yaml b/recipes/merquryfk/meta.yaml
new file mode 100644
index 0000000000000..09f7118cbb63f
--- /dev/null
+++ b/recipes/merquryfk/meta.yaml
@@ -0,0 +1,52 @@
+{% set name = "MERQURYFK" %}
+{% set version = "1.0.0" %}
+{% set sha256 = "dac0c8426b491eaf38888ea9bb8abfdbb47702df3fc6b18692eaf55aa02a425f" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/thegenemyers/MERQURY.FK/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+  patches:
+    - patch
+
+build:
+  number: 1
+  skip: True # [osx]
+  run_exports:
+    - {{ pin_subpackage("merquryfk", max_pin="x") }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('cxx') }}
+    - {{ compiler('c') }}
+  host:
+    - bzip2
+    - zlib
+    - libcurl
+  run:
+    - fastk
+    - r-base  >=4
+    - r-argparse  >=2.0.1
+    - r-ggplot2  >=3.3.2
+    - r-scales  >=1.1.1
+
+test:
+  commands:
+    - 'HAPmaker 2>&1 >/dev/null | grep "Usage: HAPmaker"'
+    - 'ASMplot 2>&1 >/dev/null | grep "Usage: ASMpLot"'
+    - 'CNplot 2>&1 >/dev/null | grep "Usage: CNpLot"'
+    - 'HAPplot 2>&1 >/dev/null | grep "Usage: HAPpLot"'
+    - 'MerquryFK 2>&1 >/dev/null | grep "Usage: MerquryFK"'
+    - 'KatComp 2>&1 >/dev/null | grep "Usage: KatComp"'
+    - 'KatGC 2>&1 >/dev/null | grep "Usage: KatGC"'
+    - 'PloidyPlot 2>&1 >/dev/null | grep "Usage: PloidyPlot"'
+    
+
+about:
+  license: https://github.com/thegenemyers/MERQURY.FK/blob/main/LICENSE
+  summary: MerquryFK replaces meryl with the FastK k-mer counter suite to considerably speed up analyses.
+  home: https://github.com/thegenemyers/MERQURY.FK
diff --git a/recipes/merquryfk/patch b/recipes/merquryfk/patch
new file mode 100644
index 0000000000000..2aa82747db104
--- /dev/null
+++ b/recipes/merquryfk/patch
@@ -0,0 +1,41 @@
+diff --git a/Makefile b/Makefile
+index 9e53dcb..94e1e75 100644
+--- a/Makefile
++++ b/Makefile
+@@ -14,28 +14,28 @@ asm_plotter.c : cn_plot.R.h asm_plotter.h
+ hap_plotter.c : hap_plot.R.h hap_plotter.h
+ 
+ HAPmaker: HAPmaker.c libfastk.c
+-	gcc $(CFLAGS) -o HAPmaker HAPmaker.c libfastk.c -lpthread -lm
++	$(CC) $(CFLAGS) -o HAPmaker HAPmaker.c libfastk.c -lpthread -lm
+ 
+ CNplot: CNplot.c cn_plotter.c libfastk.c
+-	gcc $(CFLAGS) -o CNplot CNplot.c cn_plotter.c libfastk.c -lpthread -lm
++	$(CC) $(CFLAGS) -o CNplot CNplot.c cn_plotter.c libfastk.c -lpthread -lm
+ 
+ ASMplot: ASMplot.c asm_plotter.c libfastk.c
+-	gcc $(CFLAGS) -o ASMplot ASMplot.c asm_plotter.c libfastk.c -lpthread -lm
++	$(CC) $(CFLAGS) -o ASMplot ASMplot.c asm_plotter.c libfastk.c -lpthread -lm
+ 
+ HAPplot: HAPplot.c hap_plotter.c libfastk.c
+-	gcc $(CFLAGS) -o HAPplot HAPplot.c hap_plotter.c libfastk.c -lpthread -lm
++	$(CC) $(CFLAGS) -o HAPplot HAPplot.c hap_plotter.c libfastk.c -lpthread -lm
+ 
+ MerquryFK: MerquryFK.c cn_plotter.c asm_plotter.c hap_plotter.c blk_plot.R.h libfastk.c
+-	gcc $(CFLAGS) -o MerquryFK MerquryFK.c cn_plotter.c asm_plotter.c hap_plotter.c libfastk.c -lpthread -lm
++	$(CC) $(CFLAGS) -o MerquryFK MerquryFK.c cn_plotter.c asm_plotter.c hap_plotter.c libfastk.c -lpthread -lm
+ 
+ KatComp: KatComp.c libfastk.c kx_plot.R.h
+-	gcc $(CFLAGS) -o KatComp KatComp.c libfastk.c -lpthread -lm
++	$(CC) $(CFLAGS) -o KatComp KatComp.c libfastk.c -lpthread -lm
+ 
+ KatGC: KatGC.c libfastk.c kgc_plot.R.h
+-	gcc $(CFLAGS) -o KatGC KatGC.c libfastk.c -lpthread -lm
++	$(CC) $(CFLAGS) -o KatGC KatGC.c libfastk.c -lpthread -lm
+ 
+ PloidyPlot: PloidyPlot.c smu_plot.R.h libfastk.c libfastk.h matrix.c matrix.h
+-	gcc $(CFLAGS) -o PloidyPlot PloidyPlot.c libfastk.c matrix.c -lpthread -lm
++	$(CC) $(CFLAGS) -o PloidyPlot PloidyPlot.c libfastk.c matrix.c -lpthread -lm
+ 
+ clean:
+ 	rm -f $(ALL)
diff --git a/recipes/meryl/build_failure.osx-64.yaml b/recipes/meryl/build_failure.osx-64.yaml
deleted file mode 100644
index 37b4e5de4af67..0000000000000
--- a/recipes/meryl/build_failure.osx-64.yaml
+++ /dev/null
@@ -1,104 +0,0 @@
-recipe_sha: 734dbf449636d9f4e478ff96788290d11ba5393ad8dec20baac7580c10ec0e34  # The commit at which this recipe failed to build.
-skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
-log: |-
-  In file included from meryl/meryl.H:22:
-  In file included from meryl/merylInput.H:23:
-  In file included from utility/src/kmers.H:51:
-  In file included from utility/src/kmers-v2/kmers-writer.H:27:
-  utility/src/kmers-v2/kmers-files.H:27:20: warning: nested namespace definition is a C17 extension; define each namespace separately [-Wc17-extensions]
-  namespace merylutil::inline kmers::v2 {
-                     ^~~~~~~~~~~~~~~~~~
-                      { inline namespace kmers { namespace v2
-  utility/src/kmers-v2/kmers-files.H:27:22: warning: inline nested namespace definition is a C20 extension [-Wc20-extensions]
-  namespace merylutil::inline kmers::v2 {
-                       ^
-  utility/src/kmers-v2/kmers-files.H:143:36: warning: format specifies type 'unsigned long' but the argument has type 'uint64' (aka 'unsigned long long') [-Wformat]
-                toHex(_blockPrefix), _blockPosition, _numKmers,
-                                     ^~~~~~~~~~~~~~
-  utility/src/kmers-v2/kmers-files.H:143:52: warning: format specifies type 'unsigned long' but the argument has type 'uint64' (aka 'unsigned long long') [-Wformat]
-                toHex(_blockPrefix), _blockPosition, _numKmers,
-                                                     ^~~~~~~~~
-  utility/src/kmers-v2/kmers-files.H:144:15: warning: format specifies type 'unsigned long' but the argument has type 'off_t' (aka 'long long') [-Wformat]
-                merylutil::ftell(F), _numKmers  nKmers);
-                ^~~~~~~~~~~~~~~~~~~
-  utility/src/kmers-v2/kmers-files.H:144:36: warning: format specifies type 'unsigned long' but the argument has type 'unsigned long long' [-Wformat]
-                merylutil::ftell(F), _numKmers  nKmers);
-                                     ^~~~~~~~~~~~~~~~~~
-  In file included from meryl/meryl.C:19:
-  In file included from meryl/meryl.H:22:
-  In file included from meryl/merylInput.H:23:
-  In file included from utility/src/kmers.H:51:
-  In file included from utility/src/kmers-v2/kmers-writer.H:28:
-  utility/src/kmers-v2/kmers-writer-block.H:32:20: warning: nested namespace definition is a C17 extension; define each namespace separately [-Wc17-extensions]
-  namespace merylutil::inline kmers::v2 {
-                     ^~~~~~~~~~~~~~~~~~
-                      { inline namespace kmers { namespace v2
-  utility/src/kmers-v2/kmers-writer-block.H:32:22: warning: inline nested namespace definition is a C20 extension [-Wc20-extensions]
-  namespace merylutil::inline kmers::v2 {
-                       ^
-  In file included from meryl/meryl.C:19:
-  In file included from meryl/meryl.H:22:
-  In file included from meryl/merylInput.H:23:
-  In file included from utility/src/kmers.H:51:
-  In file included from utility/src/kmers-v2/kmers-writer.H:29:
-  utility/src/kmers-v2/kmers-writer-stream.H:27:20: warning: nested namespace definition is a C17 extension; define each namespace separately [-Wc17-extensions]
-  namespace merylutil::inline kmers::v2 {
-                     ^~~~~~~~~~~~~~~~~~
-                      { inline namespace kmers { namespace v2
-  utility/src/kmers-v2/kmers-writer-stream.H:27:22: warning: inline nested namespace definition is a C20 extension [-Wc20-extensions]
-  namespace merylutil::inline kmers::v2 {
-                       ^
-  In file included from meryl/meryl.C:19:
-  In file included from meryl/meryl.H:22:
-  In file included from meryl/merylInput.H:23:
-  In file included from utility/src/kmers.H:51:
-  utility/src/kmers-v2/kmers-writer.H:31:20: warning: nested namespace definition is a C17 extension; define each namespace separately [-Wc17-extensions]
-  namespace merylutil::inline kmers::v2 {
-                     ^~~~~~~~~~~~~~~~~~
-                      { inline namespace kmers { namespace v2
-  utility/src/kmers-v2/kmers-writer.H:31:22: warning: inline nested namespace definition is a C20 extension [-Wc20-extensions]
-  namespace merylutil::inline kmers::v2 {
-                       ^
-  In file included from meryl/meryl.C:19:
-  In file included from meryl/meryl.H:22:
-  In file included from meryl/merylInput.H:23:
-  In file included from utility/src/kmers.H:52:
-  utility/src/kmers-v2/kmers-reader.H:27:20: warning: nested namespace definition is a C17 extension; define each namespace separately [-Wc17-extensions]
-  namespace merylutil::inline kmers::v2 {
-                     ^~~~~~~~~~~~~~~~~~
-                      { inline namespace kmers { namespace v2
-  utility/src/kmers-v2/kmers-reader.H:27:22: warning: inline nested namespace definition is a C20 extension [-Wc20-extensions]
-  namespace merylutil::inline kmers::v2 {
-                       ^
-  In file included from meryl/meryl.C:19:
-  In file included from meryl/meryl.H:22:
-  In file included from meryl/merylInput.H:23:
-  In file included from utility/src/kmers.H:55:
-  utility/src/kmers-v2/kmers-lookup.H:30:20: warning: nested namespace definition is a C17 extension; define each namespace separately [-Wc17-extensions]
-  namespace merylutil::inline kmers::v2 {
-                     ^~~~~~~~~~~~~~~~~~
-                      { inline namespace kmers { namespace v2
-  utility/src/kmers-v2/kmers-lookup.H:30:22: warning: inline nested namespace definition is a C20 extension [-Wc20-extensions]
-  namespace merylutil::inline kmers::v2 {
-                       ^
-  103 warnings generated.
-  make: Leaving directory '$SRC_DIR/src'
-  Traceback (most recent call last):
-    File "/opt/mambaforge/envs/bioconda/bin/conda-mambabuild", line 10, in <module>
-      sys.exit(main())
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
-      call_conda_build(action, config)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
-      result = api.build(
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
-      return build_tree(
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
-      packages_from_this = build(metadata, stats,
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
-      utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
-      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
-      raise subprocess.CalledProcessError(proc.returncode, _args)
-  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/mambaforge/envs/bioconda/conda-bld/meryl_1689693773712/work/conda_build.sh']' returned non-zero exit status 2.
-# Last 100 lines of the build log.
diff --git a/recipes/meryl/meta.yaml b/recipes/meryl/meta.yaml
index b4dd88cdafa23..43e0d6f4d274f 100644
--- a/recipes/meryl/meta.yaml
+++ b/recipes/meryl/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "meryl" %}
-{% set version = "1.4" %}
-{% set sha256 = "2ca6df788cda26521c2b3672fa2d6562a6b3b57e95003cff31df596be289c92f" %}
+{% set version = "1.4.1" %}
+{% set sha256 = "adaa713b8cd9151db2a08e7eadd8114d16bf91dae0d191674b75d7be72bdd53d" %}
 
 package:
   name: {{ name }}
@@ -14,7 +14,9 @@ source:
     - 0002-macos-cmath.patch  # [osx]
 
 build:
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('meryl', max_pin="x") }}
 
 requirements:
   build:
diff --git a/recipes/mess/meta.yaml b/recipes/mess/meta.yaml
index c442de1ebc1a2..e95fe08460b76 100644
--- a/recipes/mess/meta.yaml
+++ b/recipes/mess/meta.yaml
@@ -1,48 +1,58 @@
-{% set version = "0.2.2" %}
-{% set sha256 = "84aca7989768a00d6ea0410645c3398d9a459a48b2fabf68552f9b68b0a711c1" %}
+{% set name = "MeSS" %}
+{% set version = "0.8.3" %}
 
 package:
-  name: mess
+  name: "{{ name|lower }}"
   version: {{ version }}
 
 source:
-  url: https://github.com/metagenlab/MeSS/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: {{ sha256 }}
+  url: https://github.com/metagenlab/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 0f33dad4c2a90ed5e7d573c5cdb878150d63e99cfdbf83504f72c557eb075d74
 
 build:
   number: 0
-  entry_points:
-    - mess=mess.mess:cli
   noarch: python
-  script: "python -m pip install --no-deps --ignore-installed ."
+  entry_points:
+    - mess=mess.__main__:main
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  run_exports:
+    - {{ pin_subpackage('mess', max_pin="x.x") }}
+
 
 requirements:
   host:
-    - python>3.6,<3.9
+    - python >=3.10
     - pip
 
   run:
-    - python>3.6,<3.9
-    - snakemake-minimal=6.2.1
-    - pandas >1
-    - click>=7
+    - python >=3.10
+    - snakemake-minimal >=7.32.4
+    - pulp <2.8
+    - snaketool-utils >=0.0.5
+    - attrmap >=0.0.7
+    - pyyaml >=6.0.1
+    - pandas >=2.2.1
+    - biopython >=1.83
+    - rich-click >=1.7.4
 
 test:
-    imports:
-        - mess
-    commands:
-        - mess run -h
-        - mess --version
+  commands:
+    - mess -h
+    - mess -v
 
 about:
   home: https://github.com/metagenlab/MeSS
-  license: GPL-3.0
+  license: MIT
+  license_family: MIT
   license_file: LICENSE
-  summary: The Metagenomic Sequence Simulator (MeSS) is a snakemake workflow used for simulating metagenomic mock communities.
+  summary: "Snakemake pipeline for simulating shotgun metagenomic samples"
+  dev_url: https://github.com/metagenlab/MeSS
+  doc_url: https://metagenlab.github.io/MeSS
 
 extra:
+  container:
+    extended-base: true
   recipe-maintainers:
-    - idfarbanecha
+    - farchaab
+    - tpillone
 
-container:
-  extended-base: true
diff --git a/recipes/metabuli/build.sh b/recipes/metabuli/build.sh
index dccd8da45922c..b06956020200b 100644
--- a/recipes/metabuli/build.sh
+++ b/recipes/metabuli/build.sh
@@ -1,7 +1,18 @@
 #!/bin/bash
 
+ARCH_BUILD=""
+case $(uname -m) in
+    x86_64) ARCH_BUILD="-DHAVE_SSE4_1=1" ;;
+    arm64|aarch64) ARCH_BUILD="-DHAVE_ARM8=1" ;;
+esac
+
+if [ -z "${ARCH_BUILD}" ]; then
+    echo "Invalid architecture"
+    exit 1
+fi
+
 mkdir build
 cd build
-cmake -DCMAKE_INSTALL_PREFIX="${PREFIX}" -DHAVE_TESTS=0 -DHAVE_MPI=0 -DHAVE_SSE4_1=1 -DVERSION_OVERRIDE="${PKG_VERSION}" ..
+cmake -DCMAKE_INSTALL_PREFIX="${PREFIX}" -DHAVE_TESTS=0 -DHAVE_MPI=0 ${ARCH_BUILD} -DVERSION_OVERRIDE="${PKG_VERSION}" ..
 make -j${CPU_COUNT} ${VERBOSE_CM}
 make install
diff --git a/recipes/metabuli/meta.yaml b/recipes/metabuli/meta.yaml
index 20d813fdcfed8..0ff53ad0a4ce5 100644
--- a/recipes/metabuli/meta.yaml
+++ b/recipes/metabuli/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "1.0.1" %}
-{% set sha256 = "544926b73e7e0ed7c34d5f4f76e78e483261e5b13db6a6bb45217551bce1fae0" %}
+{% set version = "1.0.5" %}
+{% set sha256 = "c84a4e2436904f0cbea7126abf2a5f665a870735c8af786883e10f3f872bda28" %}
 
 package:
   name: metabuli
@@ -7,6 +7,8 @@ package:
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage('metabuli', max_pin="x") }}
 
 source:
   url: https://github.com/steineggerlab/metabuli/archive/{{ version }}.tar.gz
@@ -45,3 +47,6 @@ about:
 extra:
   recipe-maintainers:
     - milot-mirdita
+    - jaebeom-kim
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/metacache/meta.yaml b/recipes/metacache/meta.yaml
index 4712e702cb10f..6960be24fcb92 100644
--- a/recipes/metacache/meta.yaml
+++ b/recipes/metacache/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "2.3.1" %}
+{% set version = "2.4.2" %}
 
 package:
   name: metacache
@@ -6,11 +6,13 @@ package:
 
 source:
   url: https://github.com/muellan/metacache/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: bd31f9ab2a1251c0264480ff16b711c2c548648ac3c15fc142309c12aa8e5e7f
+  sha256: 2062de4c13cc9ed3962c8903b81dca05ccabd5820305362229bc446c11c9b111
 
 build:
-  number: 2
+  number: 0
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage('metacache', max_pin="x") }}
 
 requirements:
   build:
diff --git a/recipes/metacerberus/meta.yaml b/recipes/metacerberus/meta.yaml
index f867983a30668..8fac178cb00f0 100644
--- a/recipes/metacerberus/meta.yaml
+++ b/recipes/metacerberus/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "MetaCerberus" %}
-{% set version = "1.1" %}
+{% set version = "1.2.1" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,28 +7,31 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 65610ac32ca00ad7917cb5fa49fc2282db66590fc5310115c32e0090600eff90
+  sha256: 1140732198b95c0d670fccb213c84464eb80bbe27127e4a85560de30c4873ac6
 
 build:
-  number: 0
+  number: 1
   noarch: python
   script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_compatible('MetaCerberus', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - python <3.10
+    - python >=3.8
     - setuptools
   run:
-    - gcc
-    - make
-    - python <3.10
+    - python >=3.8
     - fastqc
     - flash2
     - fastp
     - porechop
     - bbmap
     - prodigal
+    - prodigal-gv
+    - trnascan-se
+    - phanotate
     - hmmer
     - ray-default
     - ray-core
@@ -43,8 +46,6 @@ requirements:
     - metaomestats
     - psutil
     - grpcio =1.43
-    - git
-    - gitpython
 
 
 test:
@@ -58,15 +59,12 @@ about:
   home: "https://github.com/raw-lab/metacerberus"
   license: BSD-3-Clause
   license_family: BSD
-  license_file: 
+  license_file: LICENSE.txt
   summary: "Versatile Functional Ontology Assignments for Metagenomes via Hidden Markov Model (HMM) searching with environmental focus of shotgun meta'omics data"
   doc_url: 
   dev_url: 
 
 extra:
-  skip-lints:
-    - compilers_must_be_in_build
-    - should_use_compilers
   recipe-maintainers:
     - decrevi
     - raw-lab
diff --git a/recipes/metacoag/meta.yaml b/recipes/metacoag/meta.yaml
index 1f17d44b66cce..495e6305e02c9 100644
--- a/recipes/metacoag/meta.yaml
+++ b/recipes/metacoag/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "MetaCoAG" %}
-{% set version = "1.1.4" %}
+{% set version = "1.2.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,22 +7,26 @@ package:
 
 source:
   url: "https://github.com/metagentools/{{ name }}/archive/v{{ version }}.tar.gz"
-  sha256: de300e1abfe38b2595e5d7253da26dc29fcd1fd9f7d17ab958d1f75d7582a6ef
+  sha256: 994917716c50beb748730bada2d9e76901635fa52e4b64e1f2e5b73c88059587
 
 build:
   number: 0
   noarch: python
   entry_points:
-    - combine_cov=metacoag_utils.support.combine_cov:main
+    - metacoag = metacoag.cli:main
+    - combine_cov = metacoag.metacoag_utils.support.combine_cov:main
   script:
-    - "{{ PYTHON }} -m pip install . -vv"
+    - "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage('metacoag', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - python
+    - python >=3.9,<3.13
+    - flit-core >=3.2
   run:
-    - python
+    - python >=3.9,<3.13
     - click
     - biopython
     - cairocffi
@@ -42,8 +46,8 @@ test:
 
 about:
   home: "https://github.com/metagentools/MetaCoAG"
-  license: GPL-3.0
-  license_family: GPL
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
   summary: "MetaCoAG: Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs"
   description: |
diff --git a/recipes/metadmg/build.sh b/recipes/metadmg/build.sh
new file mode 100644
index 0000000000000..c4dd3f5639cb5
--- /dev/null
+++ b/recipes/metadmg/build.sh
@@ -0,0 +1,6 @@
+#! /bin/bash
+mkdir -p "${PREFIX}"/bin
+
+make clean
+make CFLAGS="${CFLAGS}" CPPFLAGS="${CPPFLAGS}" prefix="${PREFIX}" CC="${CC}" CXX="${CXX} -L${PREFIX}/lib" LDFLAGS+="-lz -lbz2 -llzma ${LDFLAGS} -L${PREFIX}/lib" HTSSRC="systemwide"
+mv ./metaDMG-cpp ./misc/compressbam "${PREFIX}"/bin/
diff --git a/recipes/metadmg/meta.yaml b/recipes/metadmg/meta.yaml
new file mode 100644
index 0000000000000..599061d0629ce
--- /dev/null
+++ b/recipes/metadmg/meta.yaml
@@ -0,0 +1,59 @@
+{% set name = "metadmg" %}
+{% set version = "0.4" %}
+{% set sha256 = "072486bf4103c256bbc907d265d24993b3f5a90eca7dd3fced63f5a8f5840b64" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/metaDMG-dev/metaDMG-cpp/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  skip: false
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('cxx') }}
+    - {{ compiler('c') }}
+  host:
+    - openssl
+    - htslib
+    - zlib
+    - bzip2
+    - xz
+    - gsl
+    - eigen
+  run:
+    - openssl
+    - htslib
+    - zlib
+    - bzip2
+    - xz
+    - gsl
+    - eigen
+
+test:
+  commands:
+    - metaDMG-cpp 2>&1 | grep 'metaDMG-cpp'
+    - metaDMG-cpp getdamage 2>&1 | grep 'getdamage'
+    - metaDMG-cpp lca 2>&1 | grep 'lca'
+    - compressbam 2>&1 | grep 'compressbam'
+
+about:
+  home: https://github.com/metaDMG-dev/metaDMG-cpp
+  license: GPLv3, MIT
+  #license_file: LICENSE
+  summary: "metaDMG-cpp: fast and efficient method for estimating mutation and damage rates in ancient DNA data"
+
+extra:
+  recipe-maintainers:
+    - ANGSD
+    - rahenriksen
+  identifiers:
+    - doi:10.1101/2022.12.06.519264
diff --git a/recipes/metaeuk/build.sh b/recipes/metaeuk/build.sh
index 0d987840efe4b..b06956020200b 100644
--- a/recipes/metaeuk/build.sh
+++ b/recipes/metaeuk/build.sh
@@ -1,8 +1,18 @@
-#!/bin/bash -e
+#!/bin/bash
+
+ARCH_BUILD=""
+case $(uname -m) in
+    x86_64) ARCH_BUILD="-DHAVE_SSE4_1=1" ;;
+    arm64|aarch64) ARCH_BUILD="-DHAVE_ARM8=1" ;;
+esac
+
+if [ -z "${ARCH_BUILD}" ]; then
+    echo "Invalid architecture"
+    exit 1
+fi
 
 mkdir build
 cd build
-cmake -DCMAKE_INSTALL_PREFIX="${PREFIX}" -DHAVE_TESTS=0 -DHAVE_MPI=0 -DHAVE_SSE4_1=1 -DVERSION_OVERRIDE="${PKG_VERSION}" ..
+cmake -DCMAKE_INSTALL_PREFIX="${PREFIX}" -DHAVE_TESTS=0 -DHAVE_MPI=0 ${ARCH_BUILD} -DVERSION_OVERRIDE="${PKG_VERSION}" ..
 make -j${CPU_COUNT} ${VERBOSE_CM}
 make install
-
diff --git a/recipes/metaeuk/meta.yaml b/recipes/metaeuk/meta.yaml
index 1123976a0fc78..92bb339c597cb 100644
--- a/recipes/metaeuk/meta.yaml
+++ b/recipes/metaeuk/meta.yaml
@@ -7,7 +7,9 @@ package:
   version: {{ version|replace("-", ".")  }}
 
 build:
-  number: 3
+  number: 4
+  run_exports:
+    - {{ pin_subpackage('metaeuk', max_pin="x") }}
 
 source:
   url: https://github.com/soedinglab/metaeuk/archive/{{ version }}.tar.gz
@@ -50,3 +52,5 @@ extra:
   recipe-maintainers:
     - milot-mirdita
     - elileka
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/metagenome-atlas/meta.yaml b/recipes/metagenome-atlas/meta.yaml
index fb92ce827d036..7b5d034a1fe9d 100644
--- a/recipes/metagenome-atlas/meta.yaml
+++ b/recipes/metagenome-atlas/meta.yaml
@@ -1,5 +1,4 @@
-
-{% set version = "2.17.2" %}
+{% set version = "2.18.1" %}
 
 package:
   name: metagenome-atlas
@@ -7,24 +6,26 @@ package:
 
 source:
   url: https://github.com/metagenome-atlas/atlas/archive/v{{ version }}.tar.gz
-  sha256: ba23ff3c574f073f5f2fb67ac1626a52d5d91bed7df2f45181ba5785769074ca
+  sha256: 225a0e34c5c7a34ab053b98c0be5fa3c6281a03144a156454deeda5588e3d774
 
 build:
   number: 0
   entry_points:
     - atlas=atlas.atlas:cli
   noarch: python
-  script: "{{ PYTHON }} -m pip install . --no-deps -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('metagenome-atlas', max_pin="x") }}
 
 requirements:
   host:
-    - python >=3.8, <3.11
+    - python >=3.8,<3.11
     - pip
   run:
-    - python >=3.8, <3.11
+    - python >=3.8,<3.11
     - mamba
-    - bbmap >=39.01, <40
-    - snakemake-minimal >=7.18.1, <7.26
+    - bbmap >=39.01,<40
+    - snakemake-minimal >=7.18.1,<7.26
     - pygments
     - networkx
     - graphviz
@@ -36,7 +37,7 @@ requirements:
     - pathlib
     # optional to help conda solve
     - numpy =1.21
- 
+
 test:
   imports:
     - atlas
diff --git a/recipes/metamaps/meta.yaml b/recipes/metamaps/meta.yaml
index 1f2146738044e..7f0573516b435 100644
--- a/recipes/metamaps/meta.yaml
+++ b/recipes/metamaps/meta.yaml
@@ -1,16 +1,18 @@
-{% set version = "0.1.98102e9" %}
-{% set sha256 = "f73d80be084dc73128d4795e9d03abcd35be2ddc7ef81684fcadec154a28b7af" %}
+{% set version = "0.1.633d2e0" %}
+{% set sha256 = "9740c7882fe2ff39c0df9d44e85a725f73b531117ea265e2b45eeb1661d6a3e7" %}
 
 package:
   name: metamaps
   version: {{ version }}
 
 source:
-  url: https://github.com/DiltheyLab/MetaMaps/archive/98102e9e684efa6a9903d8abe93600132c101ad0.tar.gz
+  url: https://github.com/DiltheyLab/MetaMaps/archive/633d2e0ec1ffb4fd9111aca52a54d236ef5ef379.tar.gz
   sha256: {{ sha256 }}
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("metamaps", max_pin=None) }}
 
 requirements:
   build:
diff --git a/recipes/metamate/meta.yaml b/recipes/metamate/meta.yaml
new file mode 100644
index 0000000000000..221da4c5f830c
--- /dev/null
+++ b/recipes/metamate/meta.yaml
@@ -0,0 +1,69 @@
+{% set name = "metamate" %}
+{% set version = "0.4.3" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/tjcreedy/metamate/archive/v{{ version }}.tar.gz
+  sha256: e86a26643f770dae3739d8bd70f1db1a0561ad4554113a5d60b007fd0089cfe3
+
+build:
+  noarch: python
+  entry_points:
+    - metamate = metamate.metamate:main
+    - metaMATE = metamate.metamate:main
+    - filtertranslate = metamate.filtertranslate:main
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  run_exports: {{ pin_subpackage("metamate", max_pin="x") }}
+  number: 0
+
+requirements:
+  build:
+    - python
+    - mafft
+    - pysam
+    - bbmap
+    - r-base
+    - biopython
+    - r-getopt
+    - r-ape
+    - r-fastcluster
+    - r-cluster
+  host:
+    - python
+    - bbmap
+    - pysam
+    - mafft
+    - r-base
+    - r-getopt
+    - r-ape
+    - r-fastcluster
+    - r-cluster
+  run:
+    - python >=3.6
+    - biopython >=1.76
+    - scipy >=1.4.1
+    - pysam
+    - r-base
+    - bbmap
+    - mafft
+test:
+  imports:
+    - metamate
+  commands:
+    - metamate --help
+    - metaMATE --help
+    - filtertranslate --help
+
+about:
+  home: https://github.com/tjcreedy/metamate
+  license: GPL-3.0
+  license_file: LICENSE
+  summary: 'metaMATE: your metabarcoding friend!'
+
+extra:
+  recipe-maintainers:
+    - tjcreedy
+    - johnrandallia
diff --git a/recipes/metamdbg/build.sh b/recipes/metamdbg/build.sh
new file mode 100644
index 0000000000000..6ca4ef93a91f9
--- /dev/null
+++ b/recipes/metamdbg/build.sh
@@ -0,0 +1,14 @@
+#!/bin/bash
+
+
+mkdir -p $PREFIX/bin
+
+export CPATH=${PREFIX}/include
+
+mkdir build
+cd build
+cmake ..
+
+make
+
+cp ./bin/metaMDBG $PREFIX/bin
diff --git a/recipes/metamdbg/meta.yaml b/recipes/metamdbg/meta.yaml
new file mode 100644
index 0000000000000..7316c6c86c897
--- /dev/null
+++ b/recipes/metamdbg/meta.yaml
@@ -0,0 +1,41 @@
+{% set version = "0.3" %}
+
+package:
+  name: metamdbg
+  version: {{ version }}
+
+source:
+  url: https://github.com/GaetanBenoitDev/metaMDBG/archive/refs/tags/metaMDBG-{{ version }}.tar.gz
+  sha256: 24b34fcc7416b44081963a470059209c7f0592bd597a25388a94dae5edb2b09d
+
+build:
+  skip: True  # [osx]
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('metamdbg', max_pin="x.x") }}
+
+requirements:
+  build:
+    - {{ compiler('cxx') }}
+    - cmake
+    - make
+  host:
+    - zlib
+    - openmp
+  run:
+    - zlib
+    - openmp
+    - wfmash =0.8.2
+    - samtools =1.6
+    - minimap2 =2.24
+    - gsl =2.7 =he838d99_0
+
+test:
+  commands:
+    - metaMDBG 2>&1 | grep 'Usage'
+
+about:
+  home: https://github.com/GaetanBenoitDev/metaMDBG
+  license: MIT
+  summary: 'MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.'
+
diff --git a/recipes/metamobilepicker/meta.yaml b/recipes/metamobilepicker/meta.yaml
index 23628b3be02ae..33581e08f238a 100644
--- a/recipes/metamobilepicker/meta.yaml
+++ b/recipes/metamobilepicker/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "MetaMobilePicker" %}
-{% set version = "0.7.2" %}
+{% set version = "0.7.3" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://gitlab.com/jkerkvliet/{{ name }}/-/archive/v{{ version }}/{{ name }}-v{{ version }}.tar.gz"
-  sha256: 6e2133bb60202db1f46e147bce3c86c35d281d218e1d19648e8c7be99463200c
+  sha256: e3833c3ce53f43545a80c674f1c3b84c570b4db9c350efcf90ccee0f3e50f61f
 
 build:
   number: 0
@@ -28,6 +28,7 @@ requirements:
     - mamba
     - click
     - pyyaml
+    - biopython
     - rich
     - tabulate ==0.8.10
     - setuptools_scm_git_archive
diff --git a/recipes/metaphlan/meta.yaml b/recipes/metaphlan/meta.yaml
index 26ea15ee0a30e..d81a7dbd466bc 100644
--- a/recipes/metaphlan/meta.yaml
+++ b/recipes/metaphlan/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "metaphlan" %}
-{% set version = "4.0.6" %}
+{% set version = "4.1.1" %}
 
 package:
   name: {{ name }}
@@ -7,38 +7,63 @@ package:
 
 source:
   url: https://github.com/biobakery/MetaPhlAn/archive/{{version}}.tar.gz
-  sha256: f69e9499056a259829a50f4eb5ab8e62e76f57852df921784d66fb5d7c4379a4
-
+  sha256: 41529191c93b260842c6362952d46f3a22df1477e127277dab1f9abb09d2d84e
 
 build:
   noarch: python
   number: 0
-  script: {{ PYTHON }} -m pip install -vv --no-deps .
+  script: {{ PYTHON }} -m pip install -vvv --no-deps --no-build-isolation --no-cache-dir .
+  entry_points:
+    - metaphlan = metaphlan.metaphlan:main
+    - strainphlan = metaphlan.strainphlan:main
+    - add_metadata_tree.py = metaphlan.utils.add_metadata_tree:main
+    - extract_markers.py = metaphlan.utils.extract_markers:main
+    - merge_metaphlan_tables.py  = metaphlan.utils.merge_metaphlan_tables:main
+    - merge_vsc_tables.py  = metaphlan.utils.merge_vsc_tables:main
+    - plot_tree_graphlan.py = metaphlan.utils.plot_tree_graphlan:main
+    - read_fastx.py = metaphlan.utils.read_fastx:main
+    - sample2markers.py = metaphlan.utils.sample2markers:main
+    - strain_transmission.py = metaphlan.utils.strain_transmission:main
+    - sgb_to_gtdb_profile.py = metaphlan.utils.sgb_to_gtdb_profile:main
+    - metaphlan2krona.py = metaphlan.utils.metaphlan2krona:main
+    - run_treeshrink.py = metaphlan.utils.treeshrink.run_treeshrink:main
+    - treeshrink.py = metaphlan.utils.treeshrink.treeshrink:main
+    - create_toy_database.py = metaphlan.utils.create_toy_database:main
+    - fix_relab_mpa4.py = metaphlan.utils.fix_relab_mpa4:main
+  run_exports:
+    - {{ pin_subpackage('metaphlan', max_pin='x') }}
 
 requirements:
   host:
     - python >=3.7
-    - setuptools
-    - numpy
-    - cython
+    - pip
   run:
     - python >=3.7
     - bowtie2 >=2.3.0
-    - cmseq
-    - phylophlan
     - dendropy
     - numpy
+    - phylophlan >=3.1
     - biom-format
     - matplotlib-base
     - biopython
     - pandas
     - scipy
     - requests
+    - h5py
     - blast >=2.6.0
     - muscle >=3.8.1551
     - pysam
     - raxml >=8.2.10
     - samtools >=1.9
+    - r-base >=4
+    - r-essentials
+    - r-optparse
+    - r-rbiom
+    - r-ape
+    - r-compositions
+    - r-biocmanager
+    - bioconductor-microbiome
+    - hclust2
 
 test:
   commands:
@@ -51,13 +76,19 @@ test:
     - plot_tree_graphlan.py -h
     - sample2markers.py -h
     - strain_transmission.py -h
+    - sgb_to_gtdb_profile.py -h
+    - metaphlan2krona.py -h    
+    - hclust2.py -h
+    - run_treeshrink.py -h
+    - treeshrink.py -h
+    - create_toy_database.py -h
     - bowtie2-align-s --help
 
 about:
-  home: https://github.com/biobakery/metaphlan
-  license: MIT License
+  home: "https://github.com/biobakery/metaphlan"
+  license: MIT
   license_family: MIT
-  license_file: license.txt
+  license_file: "license.txt"
   summary: Metagenomic Phylogenetic Analysis
   description: |
     MetaPhlAn is a computational tool for profiling the composition of microbial
@@ -66,3 +97,5 @@ about:
     MetaPhlAn is also able to identify specific strains (in the not-so-frequent
     cases in which the sample contains a previously sequenced strains) and to
     track strains across samples for all species.
+  dev_url: "https://github.com/biobakery/metaphlan"
+  doc_url: "https://github.com/biobakery/MetaPhlAn/wiki/MetaPhlAn-4"
diff --git a/recipes/metaphor/meta.yaml b/recipes/metaphor/meta.yaml
index b9e4515b2b1b6..5833df5021a2f 100644
--- a/recipes/metaphor/meta.yaml
+++ b/recipes/metaphor/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "metaphor" %}
-{% set version = "1.7.7" %}
+{% set version = "1.7.11" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,11 +7,13 @@ package:
 
 source:
   url: https://github.com/vinisalazar/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 82f94126a0f84b9c8b02f78cc4d0d7addd36a85da26af5bb8e4901cadfd47b8b
+  sha256: 45f01fc8a7c142f3ae26b4880488e77228103a670cffaa986e5377b7efcaff86
 
 build:
-  number: 1
+  number: 0
   noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
   script:
     - "{{ PYTHON }} -m pip install . -vv"
 
@@ -23,7 +25,7 @@ requirements:
     - jinja2
     - networkx
     - pandas
-    - python >=3.9
+    - python >=3.9,<3.12
     - pyyaml
     - requests
     - snakemake >=7.5
diff --git a/recipes/metapi/meta.yaml b/recipes/metapi/meta.yaml
index c15e4c6cb408d..6e9325fc6956b 100644
--- a/recipes/metapi/meta.yaml
+++ b/recipes/metapi/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "metapi" %}
-{% set version = "2.5.0" %}
-{% set sha256 = "0c72c8367e934119db99c15c7f1c6aff3b99eed207598be1bff1bd8771dfa084" %}
+{% set version = "3.0.0" %}
+{% set sha256 = "ee0b2cedc9c5e42e9dfe015c85167b859be96cbd673e2396f0df8c027e096752" %}
 
 package:
   name: {{ name|lower }}
@@ -13,9 +13,11 @@ source:
 build:
   noarch: python
   number: 0
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
   entry_points:
     - metapi = metapi.corer:main
+  run_exports:
+    - {{ pin_subpackage('metapi', max_pin="x") }}
 
 requirements:
   host:
@@ -31,12 +33,13 @@ requirements:
     - biopython >=1.73
     - natsort
     - ruamel.yaml
-    - snakemake >=7.0
+    - snakemake-minimal >=7.0
     - seqtk
     - seqkit
     - pigz
     - fd-find
     - sra-tools >=2.11.0
+    - executor
 
 test:
   imports:
@@ -51,7 +54,8 @@ about:
   home: https://github.com/ohmeta/metapi
   summary: 'A general metagenomics data mining system focus on robust microbiome research'
   license: GPL-3.0-only
-  license_family: GPL
+  license_family: GPL3
+  license_file: LICENSE
 
 extra:
   identifiers:
diff --git a/recipes/metaprokka/meta.yaml b/recipes/metaprokka/meta.yaml
index a1a7142eb6d8c..462e42c7d97af 100644
--- a/recipes/metaprokka/meta.yaml
+++ b/recipes/metaprokka/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "metaprokka" %}
-{% set version = "1.14.6_1" %}
-{% set sha256 = "1c0489a7c53767409cd824cbb5ca329e4e0a13634f10db51c52fbc86e0612608" %}
+{% set version = "1.15.0" %}
+{% set sha256 = "2faf2759520681335f039d37186916ebf8a5dfc9cb90e67286371535afe2f561" %}
 
 package:
   name: '{{ name }}'
@@ -11,9 +11,11 @@ source:
   sha256: '{{ sha256 }}'
 
 build:
-  number: 2
+  number: 0
   noarch: generic
-
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+    
 requirements:
   host:
     - perl
@@ -22,18 +24,22 @@ requirements:
   run:
     - perl
     - prokka =1.14.6
+    - prodigal-gv >=2.11.0
+    - perl-fastx-reader >=1.11.0
 
 test:
   commands:
     - metaprokka --listdb
     - metaprokka --version 2>&1 | grep {{ version }}
+    - prokka-gv --verison 2>&1  | grep {{ version }}
 
 
 about:
   home: https://github.com/telatin/{{ name }}
-  license: GPLv3
+  license: GPL-3.0-only
   license_family: GPL
-  summary: A specialized version of Prokka to quickly annotate metagenome assemblies.
+  license_file: 'LICENSE'
+  summary: A fork of Prokka using Prodigal-GV for phage annotation and metagenome/metavirome tweaks
   dev_url: https://github.com/telatin/{{ name }}
 
 extra:
diff --git a/recipes/metasnek/meta.yaml b/recipes/metasnek/meta.yaml
new file mode 100644
index 0000000000000..8d6de4b104ae4
--- /dev/null
+++ b/recipes/metasnek/meta.yaml
@@ -0,0 +1,42 @@
+{% set name = "metasnek" %}
+{% set version = "0.0.8" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/metasnek-{{ version }}.tar.gz
+  sha256: 33babe2e8294a9bc3bd97b30f8eb7c802252c5013dc6026096956bab319eb2fc
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
+  number: 0
+
+requirements:
+  host:
+    - python >=3.8
+    - pip
+  run:
+    - python >=3.8
+
+test:
+  imports:
+    - metasnek
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/beardymcjohnface/metasnek
+  summary: Misc functions for metagenomics pipelines
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - beardymcjohnface
diff --git a/recipes/blastbesties/build.sh b/recipes/metav/build.sh
similarity index 90%
rename from recipes/blastbesties/build.sh
rename to recipes/metav/build.sh
index cace456c098dc..c65b9bb44d4b1 100644
--- a/recipes/blastbesties/build.sh
+++ b/recipes/metav/build.sh
@@ -1,2 +1,4 @@
 #!/bin/bash
+
+# build 
 $PYTHON setup.py install --single-version-externally-managed --record=record.txt
\ No newline at end of file
diff --git a/recipes/metav/meta.yaml b/recipes/metav/meta.yaml
new file mode 100644
index 0000000000000..8d066718670c2
--- /dev/null
+++ b/recipes/metav/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "metav" %}
+{% set version = "1.0.4" %}
+
+package:
+  name: "{{ name }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: 5a1bd914c3c180f2c73c77bb093fa7706853e6f8b718425dc1667a9f44356c6f
+
+build:
+  number: 1
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage('metav', max_pin="x") }}
+
+
+requirements:
+  host:
+    - python >=3.5
+    - pip
+    - setuptools
+
+  run:
+    - python >=3.5
+    - trimmomatic >=0.39
+    - bowtie2 >=2.3.0
+    - samtools >=1.14
+    - salmon >=1.10.0
+    - trinity >=2.15.1
+    - diamond >=2.0.9
+
+test:
+  commands:
+    - metav --help
+
+about:
+  home: "https://github.com/ZhijianZhou01/metav"
+  license: "LGPL-2.1-or-later"
+  license_family: "LGPL"
+  license_file: LICENSE
+  summary: "rapid detection and classification of viruses in metagenomics sequencing."
+
+extra:
+  recipe-maintainers:
+    - ZhijianZhou01
diff --git a/recipes/metdatamodel/meta.yaml b/recipes/metdatamodel/meta.yaml
new file mode 100644
index 0000000000000..a36b4b670c13c
--- /dev/null
+++ b/recipes/metdatamodel/meta.yaml
@@ -0,0 +1,44 @@
+{% set name = "metdatamodel" %}
+{% set version = "0.6.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/metDataModel-{{ version }}.tar.gz
+  sha256: 58bdbf5099c059d6e481921b017bc667e73623c1a1ba840d8b3f42d79e15b2cc
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv
+  number: 0
+  run_exports:
+      - {{ pin_subpackage('metdatamodel', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.5
+    - setuptools >=42
+    - wheel
+    - pip
+  run:
+    - python >=3.5
+
+test:
+  imports:
+    - metDataModel
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/shuzhao-li/metDataModel
+  summary: Data models for metabolomics
+  license: BSD-3-Clause
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - hechth
diff --git a/recipes/meteor/meta.yaml b/recipes/meteor/meta.yaml
new file mode 100644
index 0000000000000..0490c8b54121b
--- /dev/null
+++ b/recipes/meteor/meta.yaml
@@ -0,0 +1,60 @@
+{% set name = "meteor" %}
+{% set version = "2.0.11" %}
+
+package:
+    name: {{ name }}
+    version: {{ version }}
+
+
+source:
+  url: https://github.com/metagenopolis/meteor/archive/{{ version }}.tar.gz
+  sha256: 2e6119f2a3b19227ef6a9ed990dbbfebd2d47144cf032d0d410f015541e7b1fe
+
+build:
+  noarch: python
+  number: 0
+  script: {{ PYTHON }} -m pip install . --no-deps -vv
+  run_exports:
+    - {{ pin_subpackage('meteor', max_pin="x.x") }}
+
+requirements:
+    host:
+        - python >=3.10
+        - poetry
+    run:
+        - python >=3.10
+        - bowtie2 >=2.3.5
+        - pysam
+        - pyarrow
+        - pandas
+        - ete3
+        - packaging
+        - cogent3
+        - biom-format
+        - bcftools >=0.1.19
+        - raxml-ng >=1.0.1
+        - bedtools >=2.18.0
+test:
+    commands:
+        - meteor -h
+        - bowtie2 -h
+        - bedtools -h
+        - raxml-ng -h
+        - bcftools -h
+    imports:
+        - pysam
+        - pandas
+        - pyarrow
+        - ete3
+        - packaging
+        - biom
+        - cogent3
+
+about:
+  home: https://github.com/metagenopolis/meteor
+  license: GPL-3.0-or-later
+  license_file: COPYING
+  summary: 'Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems.'
+  description: |
+    Meteor relies on genes catalogue to perform specie level taxonomic assignments, functional and strain diffusion analysis.
+  license_family: GPL3
diff --git a/recipes/methplotlib/meta.yaml b/recipes/methplotlib/meta.yaml
index b1197572bd4a2..98d0ac87c7494 100644
--- a/recipes/methplotlib/meta.yaml
+++ b/recipes/methplotlib/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "methplotlib" %}
-{% set version = "0.20.1" %}
+{% set version = "0.21.2" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,14 +7,16 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: becc95c6eca9c4b6e1b765d8667741b4ffa772ae147e83b36415051b3638fd3e
+  sha256: 12f487986c3296efa03c05091c0feeb99337aef7e009f7df747280481b9a8c3f
 
 build:
   number: 0
   entry_points:
     - methplotlib=methplotlib.methplotlib:main
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('methplotlib', max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/methylartist/meta.yaml b/recipes/methylartist/meta.yaml
index e9ca00061f004..13807dcfdbdd1 100644
--- a/recipes/methylartist/meta.yaml
+++ b/recipes/methylartist/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "methylartist" %}
-{% set version = "1.2.3" %}
+{% set version = "1.3.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: f08eae0c5fe96cf6f900c7abceb8f921bfbaa3f64fc778787febc7b500062f24
+  sha256: 955f2ca5b0ba0d2c28e7421140e90555a8ef867ecedb41788c83132b29410329
 
 build:
   noarch: python
   number: 0
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 test:
   commands:
@@ -21,7 +23,7 @@ test:
 requirements:
   host:
     - pip
-    - python >=3.8
+    - python >=3.7
   run:
     - bx-python >=0.8.11
     - matplotlib-base >=3.4.3
@@ -33,13 +35,19 @@ requirements:
     - scikit-bio >=0.5.6
     - scipy >=1.7.1
     - seaborn >=0.11.2
+    - tqdm
 
 about:
   home: "https://github.com/adamewing/methylartist"
   license: MIT
   license_family: MIT
+  license_file: LICENSE
   summary: "Tools for parsing and plotting nanopore methylation data"
 
 extra:
   recipe-maintainers:
     - adamewing
+  container:
+    extended-base: True
+  identifiers:
+    - doi:10.1093/bioinformatics/btac292
diff --git a/recipes/methylmap/meta.yaml b/recipes/methylmap/meta.yaml
index 4b2f9a1dc1b3f..2deb96f13c1c9 100644
--- a/recipes/methylmap/meta.yaml
+++ b/recipes/methylmap/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "methylmap" %}
-{% set version = "0.3.5" %}
+{% set version = "0.4.6" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,14 +7,16 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 372b0ac7be5c0c5c2b86cc85cbc33c90631fd18243d34c18ef5b87e34d1e5a3b
+  sha256: ff94b6d5b75c704af8ced7b0c0187c1a4d8bfb7cf3565bde09ea46d2c9e44963
 
 build:
   number: 0
   entry_points:
     - methylmap=methylmap.methylmap:main
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('methylmap', max_pin="x") }}
 
 requirements:
   host:
@@ -28,6 +30,8 @@ requirements:
     - pyranges >=0.0.77
     - tabix
 #    - modbam2bed ## not available in bioconda, only through epi2me-labs
+    - scipy
+    - dash
 
 test:
   imports:
@@ -39,8 +43,11 @@ about:
   home: https://github.com/EliseCoopman/methylmap
   license: MIT
   license_family: MIT
+  license_file: LICENSE
   summary: Plotting tool for population-scale nucleotide modifications
 
 extra:
   recipe-maintainers:
     - EliseCoopman
+  identifiers:
+    - doi:10.1101/2022.11.28.518239
diff --git a/recipes/methylpy/build.sh b/recipes/methylpy/build.sh
index 9527695cadb4a..6f124e68e5e57 100644
--- a/recipes/methylpy/build.sh
+++ b/recipes/methylpy/build.sh
@@ -1,12 +1,12 @@
 #!/bin/bash
 
 # Install methylpy
-python -m pip install . --no-deps --ignore-installed -vv
+${PYTHON} -m pip install . --no-deps --no-build-isolation -vvv
 
 # Install RMS
-export CPATH=${PREFIX}/include
+export CPLUS_INCLUDE_PATH=${PREFIX}/include
 cd methylpy
-$CXX -O3 -L${PREFIX}/lib -lgsl -lgslcblas -o run_rms_tests.out rms.cpp
+${CXX} -O3 -L${PREFIX}/lib -lgsl -lgslcblas -o run_rms_tests.out rms.cpp
 # run_rms_tests.out needs to be copied to the directory where methylpy is installed
-cp run_rms_tests.out ${PREFIX}/lib/python*/site-packages/methylpy/
+cp run_rms_tests.out ${SP_DIR}/methylpy/
 cd ..
diff --git a/recipes/methylpy/meta.yaml b/recipes/methylpy/meta.yaml
index 2d3559812ed78..3fe58629ca9d4 100644
--- a/recipes/methylpy/meta.yaml
+++ b/recipes/methylpy/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "methylpy" %}
-{% set version = "1.4.3" %}
-{% set sha256 = "3ad7ea3093dc3751544936bbbcdc55b16e8b3b39600f86c75219360e2a1437d7" %}
+{% set version = "1.4.7" %}
+{% set sha256 = "bbd9ab01cd7b6bba9b96b94aed2e1deee5af405d743eef4f031eb8b846ae8156" %}
 
 package:
   name: {{ name|lower }}
@@ -11,7 +11,9 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('methylpy', max_pin="x") }}
 
 requirements:
   build:
@@ -43,10 +45,11 @@ test:
 
 about:
   home: https://github.com/yupenghe/methylpy
-  license: Apache 2.0
+  license: Apache-2.0
   license_family: APACHE
   license_file: LICENSE.txt
   summary: "Bisulfite sequencing data processing and differential methylation analysis"
+  doc_url: "https://github.com/yupenghe/methylpy/blob/methylpy/tutorial/tutorial.md"
 
 extra:
   identifiers:
diff --git a/recipes/mg-toolkit/meta.yaml b/recipes/mg-toolkit/meta.yaml
index 52488ee71a435..f0536f69afb05 100644
--- a/recipes/mg-toolkit/meta.yaml
+++ b/recipes/mg-toolkit/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "mg-toolkit" %}
-{% set version = "0.10.1" %}
+{% set version = "0.10.4" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,26 +7,29 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: "19550a3ba8033639822c6f878b799fe6394abc216564012285f84f0a6c19086a"
+  sha256: "087042ccaac9601fecfdc2e121330b650426ec373ce5353fc32cd5337ef823a9"
 
 build:
   number: 0
   entry_points:
     - mg-toolkit=mg_toolkit.__main__:main
   noarch: python
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('mg-toolkit', max_pin="x.x") }}
 
 requirements:
   host:
-    - python >=3.5
+    - python >=3.8
     - pip
     - pytest-runner
   run:
     - jsonapi-client >=0.9.9
-    - pandas >=0.25.3
-    - python >=3.5
-    - requests >=2.24.0
+    - pandas ==2.0.3
+    - python >=3.8
+    - requests >=2.31.0
     - tqdm >=4.49.0
+    - urllib3 >=2.2.1
 
 test:
   imports:
@@ -35,8 +38,13 @@ test:
     - mg-toolkit --help
 
 about:
-  home: "https://github.com/EBI-metagenomics/emg-toolkit"
+  home: "https://www.ebi.ac.uk/metagenomics"
   license: Apache-2.0
   license_file: LICENSE
   license_family: "APACHE"
   summary: "Metagenomics toolkit."
+  dev_url: "https://github.com/EBI-metagenomics/emg-toolkit"
+
+extra:
+  identifiers:
+    - biotools:MGnify
diff --git a/recipes/mgatk/meta.yaml b/recipes/mgatk/meta.yaml
new file mode 100644
index 0000000000000..3a641253df822
--- /dev/null
+++ b/recipes/mgatk/meta.yaml
@@ -0,0 +1,67 @@
+{% set name = "mgatk" %}
+{% set version = "0.7.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/mgatk-{{ version }}.tar.gz
+  sha256: f42f5eb8fcfd38dd6ef3db853764071311cb70d841a73ff2f40f0a0c9e9d7de9
+
+build:
+  number: 1
+  noarch: python
+  entry_points:
+    - mgatk = mgatk.cli:main
+    - mgatk-del-find = mgatk.deletioncalling.clifind:main
+    - mgatk-del = mgatk.deletioncalling.clidel:main
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation --no-cache-dir
+  run_exports:
+    - {{ pin_subpackage('mgatk', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3
+    - pip
+  run:
+    - python >=3
+    - click
+    - pysam
+    - pytest
+    - snakemake-minimal <8
+    - pulp <2.8
+    - biopython
+    - numpy
+    - pandas
+    - optparse-pretty
+    - regex
+    - ruamel.yaml
+    - openjdk
+    - picard-slim
+    - r-base
+    - r-dplyr
+    - r-data.table
+    - r-matrix
+    - bioconductor-genomicranges
+    - bioconductor-summarizedexperiment
+
+test:
+  imports:
+    - mgatk
+  commands:
+    - mgatk --help
+    - mgatk-del-find --help
+    - mgatk-del --help
+
+about:
+  home: https://github.com/caleblareau/mgatk
+  summary: Mitochondrial genome analysis toolkit.
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE.txt
+  doc_url: https://github.com/caleblareau/mgatk/wiki
+
+extra:
+  recipe-maintainers:
+    - mencian
diff --git a/recipes/mgcod/meta.yaml b/recipes/mgcod/meta.yaml
index f13592e48f8db..350f150a765f7 100644
--- a/recipes/mgcod/meta.yaml
+++ b/recipes/mgcod/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "Mgcod" %}
-{% set version = "1.0.1" %}
+{% set version = "1.0.2" %}
 
 package:
   name: "{{ name | lower }}"
@@ -7,11 +7,13 @@ package:
 
 source:
   url: https://github.com/gatech-genemark/{{ name }}/releases/download/v{{ version }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 03099166623fc1a27485b45ddde853a26f1d7adb0429cb326608b496a5abd628
+  sha256: d3e104b1595d8e1117decc8f36dc9b57464b583cd52390b448996c45699165a7
 
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('mgcod', max_pin="x") }}
 
 requirements:
   run:
diff --git a/recipes/mgikit/build.sh b/recipes/mgikit/build.sh
new file mode 100644
index 0000000000000..4d95671dbe073
--- /dev/null
+++ b/recipes/mgikit/build.sh
@@ -0,0 +1,4 @@
+#!/bin/bash -e
+
+RUST_BACKTRACE=1
+cargo install --no-track --verbose --root "${PREFIX}" --path .
\ No newline at end of file
diff --git a/recipes/mgikit/meta.yaml b/recipes/mgikit/meta.yaml
new file mode 100644
index 0000000000000..e6cd834ed4652
--- /dev/null
+++ b/recipes/mgikit/meta.yaml
@@ -0,0 +1,41 @@
+{% set version = "0.1.5" %}
+
+package:
+  name: mgikit
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('mgikit', max_pin="x.x") }}
+
+source:
+  url: https://github.com/sagc-bioinformatics/mgikit/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 3f079452f3d2b2734843ae1fc821e956d45949cb3d7f8c3ce99d259af9eb2ac0
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - {{ compiler('rust') }}
+    - clangdev
+    - pkg-config
+    - make
+    - cmake
+  
+test:
+  commands:
+    - mgikit --help
+
+about:
+  home: https://sagc-bioinformatics.github.io/mgikit/
+  license: AFL-3.0
+  summary: |
+    mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports. 
+  dev_url: https://github.com/sagc-bioinformatics/mgikit
+
+extra:
+  additional-platforms:
+    - linux-aarch64
+  recipe-maintainers:
+    - ziadbkh
diff --git a/recipes/mgnify-pipelines-toolkit/meta.yaml b/recipes/mgnify-pipelines-toolkit/meta.yaml
new file mode 100644
index 0000000000000..3492e9374d6cf
--- /dev/null
+++ b/recipes/mgnify-pipelines-toolkit/meta.yaml
@@ -0,0 +1,75 @@
+{% set name = "mgnify-pipelines-toolkit" %}
+{% set version = "0.1.3" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/mgnify_pipelines_toolkit-{{ version }}.tar.gz
+  sha256: d04f57d1ac719bc716d672de08c08eca35ce62d25d248dccf0269bda924388e2
+
+build:
+  entry_points:
+    - get_subunits = mgnify_pipelines_toolkit.analysis.shared.get_subunits:main
+    - get_subunits_coords = mgnify_pipelines_toolkit.analysis.shared.get_subunits_coords:main
+    - mapseq2biom = mgnify_pipelines_toolkit.analysis.shared.mapseq2biom:main
+    - are_there_primers = mgnify_pipelines_toolkit.analysis.amplicon.are_there_primers:main
+    - assess_inflection_point_mcp = mgnify_pipelines_toolkit.analysis.amplicon.assess_inflection_point_mcp:main
+    - assess_mcp_proportions = mgnify_pipelines_toolkit.analysis.amplicon.assess_mcp_proportions:main
+    - classify_var_regions = mgnify_pipelines_toolkit.analysis.amplicon.classify_var_regions:main
+    - find_mcp_inflection_points = mgnify_pipelines_toolkit.analysis.amplicon.find_mcp_inflection_points:main
+    - make_asv_count_table = mgnify_pipelines_toolkit.analysis.amplicon.make_asv_count_table:main
+    - remove_ambiguous_reads = mgnify_pipelines_toolkit.analysis.amplicon.remove_ambiguous_reads:main
+    - rev_comp_se_primers = mgnify_pipelines_toolkit.analysis.amplicon.rev_comp_se_primers:main
+    - standard_primer_matching = mgnify_pipelines_toolkit.analysis.amplicon.standard_primer_matching:main
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('mgnify-pipelines-toolkit', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.9
+    - setuptools >=61.0
+    - pip
+  run:
+    - python >=3.9
+    - biopython ==1.82
+    - numpy ==1.26.0
+    - pandas ==2.0.2
+    - regex ==2023.12.25
+
+test:
+  imports:
+    - mgnify_pipelines_toolkit
+  commands:
+    - pip check
+    - get_subunits --help
+    - get_subunits_coords --help
+    - mapseq2biom --help
+    - are_there_primers --help
+    - assess_inflection_point_mcp --help
+    - assess_mcp_proportions --help
+    - classify_var_regions --help
+    - find_mcp_inflection_points --help
+    - make_asv_count_table --help
+    - remove_ambiguous_reads --help
+    - rev_comp_se_primers --help
+    - standard_primer_matching --help
+  requires:
+    - pip
+
+about:
+  home: https://github.com/EBI-Metagenomics/mgnify-pipelines-toolkit
+  summary: Collection of scripts and tools for MGnify pipelines
+  description: |
+    This package contains a collection of scripts used by MGnify
+    pipelines
+  license: Apache-2.0
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - chrisAta
diff --git a/recipes/mhcflurry/meta.yaml b/recipes/mhcflurry/meta.yaml
index 2bb64e852c5a2..e1fa36f02ca62 100644
--- a/recipes/mhcflurry/meta.yaml
+++ b/recipes/mhcflurry/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "mhcflurry" %}
-{% set version = "2.0.6" %}
+{% set version = "2.1.1" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 06f68b39a4d8cfd181bccbc8d1ef1b961658e5fb1068a5fc174f1dadd8ddc741
+  sha256: 5907a489ffe7e459295b08849428677fc738fcb19716628e4e3d06f247131ff8
 
 build:
   number: 0
@@ -25,7 +25,9 @@ build:
     - mhcflurry-calibrate-percentile-ranks = mhcflurry.calibrate_percentile_ranks_command:run
     - mhcflurry-class1-train-presentation-models = mhcflurry.train_presentation_models_command:run
     - mhcflurry-cluster-worker-entry-point = mhcflurry.cluster_parallelism:worker_entry_point
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('mhcflurry', max_pin="x") }}
 
 requirements:
   host:
@@ -40,7 +42,7 @@ requirements:
     - pyyaml
     - scikit-learn
     - six
-    - tensorflow >=2.2.0
+    - tensorflow >=2.12.0
     - tqdm
 
 test:
@@ -62,8 +64,9 @@ test:
 
 about:
   home: "https://github.com/openvax/mhcflurry"
-  license: Apache Software
+  license: Apache-2.0
   license_family: APACHE
+  license_file: LICENSE
   summary: "MHC Binding Predictor"
 
 extra:
diff --git a/recipes/mhcgnomes/meta.yaml b/recipes/mhcgnomes/meta.yaml
index 613dad35fc998..a1b34ab1534b1 100644
--- a/recipes/mhcgnomes/meta.yaml
+++ b/recipes/mhcgnomes/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "mhcgnomes" %}
-{% set version = "1.8.4" %}
+{% set version = "1.8.6" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 6ee95dbb3f083d7a74197941e3fe993d9078593c865f1b6acc1153489f90d4b3
+  sha256: d32b886d9cd58ed0e45d4cb3da83a439b1b68b59790ae04985711e489aa5e264
 
 build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   host:
@@ -22,7 +24,7 @@ requirements:
     - numpy
     - pandas
     - python
-    - pyyaml ==5.4
+    - pyyaml >=5.4
     - serializable
 
 test:
diff --git a/recipes/micom/meta.yaml b/recipes/micom/meta.yaml
index d2cee25a7021d..13e69607e3381 100644
--- a/recipes/micom/meta.yaml
+++ b/recipes/micom/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "micom" %}
-{% set version = "0.32.5" %}
+{% set version = "0.35.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: b3e7024f266c8b6a2070475e7f8d30d1e5b9f35ff1a725331b90bc7e9dd35f0b
+  sha256: 0df2fbb3282c10e1de6522bf104e39d9540c1b1a92c63cc6882bee9980e61ae3
 
 build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/microbecensus/2to3.patch b/recipes/microbecensus/2to3.patch
new file mode 100644
index 0000000000000..67536c33218a2
--- /dev/null
+++ b/recipes/microbecensus/2to3.patch
@@ -0,0 +1,385 @@
+--- ./setup.py	(original)
++++ ./setup.py	(refactored)
+@@ -9,7 +9,7 @@
+ 		install_lib.install_lib.run(self)
+ 		for fn in self.get_outputs():
+ 			if fn.split('/')[-2] == 'bin':
+-				mode = ((os.stat(fn).st_mode) | 0555) & 07777
++				mode = ((os.stat(fn).st_mode) | 0o555) & 0o7777
+ 				log.info("changing mode of %s to %o", fn, mode)
+ 				os.chmod(fn, mode)
+ 
+--- ./microbe_census/microbe_census.py	(original)
++++ ./microbe_census/microbe_census.py	(refactored)
+@@ -123,7 +123,7 @@
+ 	
+ def check_paths(paths):
+ 	""" Check that all relative paths exist """
+-	for my_path in paths.values():
++	for my_path in list(paths.values()):
+ 		if os.path.isfile(my_path):
+ 			continue
+ 		elif os.path.isdir(my_path):
+@@ -240,23 +240,23 @@
+ def print_copyright():
+ 	# print out copyright information
+ 	print ("\nMicrobeCensus - estimation of average genome size from shotgun sequence data")
+-	print ("version %s; github.com/snayfach/MicrobeCensus" % __version__)
++	print(("version %s; github.com/snayfach/MicrobeCensus" % __version__))
+ 	print ("Copyright (C) 2013-2015 Stephen Nayfach")
+ 	print ("Freely distributed under the GNU General Public License (GPLv3)\n")
+ 
+ def print_parameters(args):
+ 	# print out parameters
+ 	print ("=============Parameters==============")
+-	print ("Input metagenome: %s" % args['seqfiles'])
+-	print ("Output file: %s" % args['outfile'])
+-	print ("Reads trimmed to: %s bp" % args['read_length'])
+-	print ("Maximum reads sampled: %s" % args['nreads'])
+-	print ("Threads to use for db search: %s" % args['threads'])
+-	print ("Minimum base-level quality score: %s" % (args['min_quality'] if args['file_type'] == 'fastq' else 'NA'))
+-	print ("Minimum read-level quality score: %s" % (args['mean_quality'] if args['file_type'] == 'fastq' else 'NA'))
+-	print ("Maximum percent unknown bases/read: %s" % args['max_unknown'])
+-	print ("Filter duplicate reads: %s" % args['filter_dups'])
+-	print ("Keep temporary files: %s\n" % args['keep_tmp'])
++	print(("Input metagenome: %s" % args['seqfiles']))
++	print(("Output file: %s" % args['outfile']))
++	print(("Reads trimmed to: %s bp" % args['read_length']))
++	print(("Maximum reads sampled: %s" % args['nreads']))
++	print(("Threads to use for db search: %s" % args['threads']))
++	print(("Minimum base-level quality score: %s" % (args['min_quality'] if args['file_type'] == 'fastq' else 'NA')))
++	print(("Minimum read-level quality score: %s" % (args['mean_quality'] if args['file_type'] == 'fastq' else 'NA')))
++	print(("Maximum percent unknown bases/read: %s" % args['max_unknown']))
++	print(("Filter duplicate reads: %s" % args['filter_dups']))
++	print(("Keep temporary files: %s\n" % args['keep_tmp']))
+ 
+ def quality_filter(rec, args):
+ 	""" Return true if read fails QC """
+@@ -362,10 +362,10 @@
+ 	else:
+ 		args['sampled_reads'] = read_id
+ 	if args['verbose']:
+-		print ("\t%s reads shorter than %s bp and skipped" % (too_short, args['read_length']))
+-		print ("\t%s low quality reads found and skipped" % low_qual)
+-		print ("\t%s duplicate reads found and skipped" % dups)
+-		print ("\t%s reads sampled from seqfile" % read_id)
++		print(("\t%s reads shorter than %s bp and skipped" % (too_short, args['read_length'])))
++		print(("\t%s low quality reads found and skipped" % low_qual))
++		print(("\t%s duplicate reads found and skipped" % dups))
++		print(("\t%s reads sampled from seqfile" % read_id))
+ 
+ def search_seqs(args, paths):
+ 	""" Search high quality reads against marker genes using RAPsearch2 """
+@@ -383,7 +383,7 @@
+ 			if line[0] != '#': hits.append(line.split()[0])
+ 		distinct_hits = len(set(hits))
+ 		if args['verbose']:
+-			print ("\t%s reads hit marker proteins" % str(distinct_hits))
++			print(("\t%s reads hit marker proteins" % str(distinct_hits)))
+ 	else:
+ 		clean_up(paths)
+ 		sys.exit("\nDatabase search has exited with the following error:\n%s" % error)
+@@ -455,14 +455,14 @@
+ 		clean_up(paths)
+ 		sys.exit("\nError: No hits to marker proteins - cannot estimate genome size! Rerun program with more reads.")
+ 	if args['verbose']:
+-		print ("\t%s reads assigned to a marker protein" % len(best_hits))
++		print(("\t%s reads assigned to a marker protein" % len(best_hits)))
+ 	return best_hits
+ 
+ def aggregate_hits(args, paths, best_hits):
+ 	""" Count hits to each gene family from and return dictionary of results {fam_id:hits} """
+ 	optpars = find_opt_pars(paths['params'], args['read_length'])
+ 	agg_hits = {}
+-	for fam_id, aln, cov, score in best_hits.values():
++	for fam_id, aln, cov, score in list(best_hits.values()):
+ 		aln_stat = optpars[fam_id]['aln_stat']
+ 		if fam_id not in agg_hits:
+ 			agg_hits[fam_id] = 1.0 if aln_stat == 'hits' else cov if aln_stat == 'cov' else aln
+@@ -487,7 +487,7 @@
+ 	weights = read_dic(paths['weights'], header=False, dtype='float')
+ 	# predict average genome size for each marker
+ 	estimates = {}
+-	for fam_id, hits in agg_hits.items():
++	for fam_id, hits in list(agg_hits.items()):
+ 		coeff = coeffs['_'.join([str(args['read_length']),fam_id])]
+ 		rate = hits/(args['sampled_reads'] * args['read_length'])
+ 		if rate == 0: continue
+@@ -497,7 +497,7 @@
+ 	mad_estimate = mad(list(estimates.values()))
+ 	median_estimate = median(list(estimates.values()))
+ 	sum_weights = 0
+-	for fam_id, estimate in estimates.items():
++	for fam_id, estimate in list(estimates.items()):
+ 		if abs(estimate - median_estimate) >= mad_estimate:
+ 			continue
+ 		else:
+@@ -507,7 +507,7 @@
+ 	est_ags = est_ags/sum_weights
+ 	# report results
+ 	if args['verbose']:
+-		print ("\t%s bp" % str(round(est_ags, 2)))
++		print(("\t%s bp" % str(round(est_ags, 2))))
+ 	return est_ags
+ 
+ def report_results(args, est_ags, count_bases):
+--- ./tests/test_microbe_census.py	(original)
++++ ./tests/test_microbe_census.py	(refactored)
+@@ -28,7 +28,7 @@
+ 	""" check whether file is read into list properly """
+ 	
+ 	def setUp(self): # create test files in tmp directory
+-		self.exp_values = range(10)
++		self.exp_values = list(range(10))
+ 		self.dir = tempfile.mkdtemp()
+ 		self.inpath = os.path.join(self.dir, 'tmp.txt')
+ 		for i in range(10):
+--- ./training/class_reads.py	(original)
++++ ./training/class_reads.py	(refactored)
+@@ -67,20 +67,20 @@
+ 			args_list.append(args)
+ 
+ # Print arguments
+-print "Threads to use: %s" % threads
+-print "Number of search results to classify: %s" % len(args_list)
+-print "Output directory: %s" % hits_dir
++print("Threads to use: %s" % threads)
++print("Number of search results to classify: %s" % len(args_list))
++print("Output directory: %s" % hits_dir)
+ 
+ # Classify reads in parallel
+ parallel_function(classify_reads, args_list, threads)
+ 
+ # Write gene_fam.map and gene_len.map
+ f_out = open(gene_fam_path, 'w')
+-for gene, fam in gene2fam.iteritems():
++for gene, fam in gene2fam.items():
+ 	record = [str(gene), str(fam)]
+ 	f_out.write('\t'.join(record)+'\n')
+ f_out = open(gene_len_path, 'w')
+-for gene, length in gene2len.iteritems():
++for gene, length in gene2len.items():
+ 	record = [str(gene), str(length)]
+ 	f_out.write('\t'.join(record)+'\n')
+ 
+--- ./training/optimize_parameters.py	(original)
++++ ./training/optimize_parameters.py	(refactored)
+@@ -30,12 +30,12 @@
+ preds_path  = os.path.join(main_dir, 'training/output/training_preds.map')
+ 
+ # Store genome & library sizes
+-print "Storing genome sizes and library sizes..."
++print("Storing genome sizes and library sizes...")
+ genome2size = genome_sizes(genomes_dir)
+ library2size = library_sizes(reads_dir)
+ 
+ # Store classification rates
+-print "Storing classification rates..."
++print("Storing classification rates...")
+ class_rates = store_rates(hits_dir, library2size)
+ 
+ # Build argument list
+@@ -55,10 +55,10 @@
+ # Compute x-validation error for each set of parameters
+ # and find optimal parameters
+ 
+-print "Evaluating performance for %s parameters..." % len(args_list)
++print("Evaluating performance for %s parameters..." % len(args_list))
+ xval_error = parallel_return_function(xvalidation, args_list, threads)
+ 
+-print "Finding optimal parameters..."
++print("Finding optimal parameters...")
+ opt_pars = find_opt_pars(xval_error)
+ #	write results
+ f_out = open(pars_path, 'w')
+@@ -70,7 +70,7 @@
+ 	record = [ str(x) for x in [fam, read_length, aln_cov, max_pid, min_score, aln_stat] ]
+ 	f_out.write('\t'.join(record)+'\n')
+ 
+-print "Finding proportionality constants..."
++print("Finding proportionality constants...")
+ prop_consts = {}
+ for read_length, fam in sorted(opt_pars.keys()):
+ 	min_score, max_pid, aln_cov, rate_type = opt_pars[(read_length, fam)]['pars']
+@@ -85,7 +85,7 @@
+ 	record = [read_length + '_' + fam, str(prop_const)]
+ 	f_out.write('\t'.join(record)+'\n')
+ 
+-print "Getting per-gene AGS predictions..."
++print("Getting per-gene AGS predictions...")
+ training_ests = {}
+ for read_length, fam in sorted(opt_pars.keys()):
+ 	min_score, max_pid, aln_cov, rate_type = opt_pars[(read_length, fam)]['pars']
+--- ./training/search_reads.py	(original)
++++ ./training/search_reads.py	(refactored)
+@@ -36,7 +36,7 @@
+ 
+ # Build database if necessary
+ if not os.path.isfile(rapdb_path):
+-	print 'RAPsearch2 database does not exist. Creating...'
++	print('RAPsearch2 database does not exist. Creating...')
+ 	# cat sequences together in tempfile
+ 	f_out = open(seqs_path, 'w')
+ 	gene_fams = os.listdir(gene_fam_dir)
+@@ -69,10 +69,10 @@
+ 			args_list.append(args)
+ 
+ # Print arguments
+-print "Threads to use: %s" % threads
+-print "Read lengths: %s" % os.listdir(reads_dir)
+-print "Number of libraries to search: %s" % len(args_list)
+-print "Output directory: %s" % search_dir
++print("Threads to use: %s" % threads)
++print("Read lengths: %s" % os.listdir(reads_dir))
++print("Number of libraries to search: %s" % len(args_list))
++print("Output directory: %s" % search_dir)
+ 
+ # Search libraries in parallel
+ parallel_subprocess(command, args_list, threads)
+--- ./training/seq_sim.py	(original)
++++ ./training/seq_sim.py	(refactored)
+@@ -8,22 +8,22 @@
+ try:
+     import sys
+ except Exception:
+-    print 'Module "sys" not installed'; exit()
++    print('Module "sys" not installed'); exit()
+ 
+ try:
+     import os
+ except Exception:
+-    print 'Module "os" not installed'; exit()
++    print('Module "os" not installed'); exit()
+     
+ try:
+     import optparse
+ except Exception:
+-    print 'Module "optparse" not installed'; exit()
++    print('Module "optparse" not installed'); exit()
+ 
+ try:
+     import datetime
+ except Exception:
+-    print 'Module "datetime" not installed'; exit()
++    print('Module "datetime" not installed'); exit()
+ 
+ from sim_functions import *
+ 
+@@ -48,10 +48,10 @@
+ 	paired_end = options.paired_end
+ 	error_model = options.error_model
+ 	error_rate = options.error_rate
+-except Exception, e:
+-    print "Incorrect number of command line arguments."
+-    print "\nUsage: python seq_sim.py [-options] <seqfile> <outfile>"
+-    print "For all options enter: python seq_sim.py -h"
++except Exception as e:
++    print("Incorrect number of command line arguments.")
++    print("\nUsage: python seq_sim.py [-options] <seqfile> <outfile>")
++    print("For all options enter: python seq_sim.py -h")
+     sys.exit()
+ 
+ # check for argument validity
+--- ./training/sim_functions.py	(original)
++++ ./training/sim_functions.py	(refactored)
+@@ -6,27 +6,27 @@
+ try:
+     import random
+ except Exception:
+-    print 'Module "random" not installed'; exit()
++    print('Module "random" not installed'); exit()
+ 
+ try:
+     import gzip
+ except Exception:
+-    print 'Module "gzip" not installed'; exit()
++    print('Module "gzip" not installed'); exit()
+ 
+ try:
+     import os
+ except Exception:
+-    print 'Module "os" not installed'; exit()
++    print('Module "os" not installed'); exit()
+ 
+ try:
+     import Bio.SeqIO
+ except Exception:
+-    print 'Module "Bio.SeqIO" not installed'; exit()
++    print('Module "Bio.SeqIO" not installed'); exit()
+     
+ try:
+     import math
+ except Exception:
+-    print 'Module "math" not installed'; exit()
++    print('Module "math" not installed'); exit()
+ 
+ 
+ #   define functions
+@@ -38,7 +38,7 @@
+ def parse_genome(genome):
+     scaffolds = []
+     lengths = []
+-    for scaffold in genome.keys():
++    for scaffold in list(genome.keys()):
+         scaffolds.append(scaffold)
+         lengths.append(len(genome[scaffold]))
+     return scaffolds, [length/float(sum(lengths)) for length in lengths], sum(lengths)
+@@ -64,7 +64,7 @@
+     return ''.join([comp[base] for base in seq[::-1]])
+ 
+ def amplify_frag(frag_seq, gc_to_bias):
+-    gc = find_nearest(compute_gcc(frag_seq), gc_to_bias.keys())
++    gc = find_nearest(compute_gcc(frag_seq), list(gc_to_bias.keys()))
+     return random.random() < gc_to_bias[gc]
+ 
+ def compute_gcc(seq):
+--- ./training/sim_reads.py	(original)
++++ ./training/sim_reads.py	(refactored)
+@@ -55,11 +55,11 @@
+ 		args_list.append(args)
+ 
+ # Print arguments
+-print "Threads to use: %s" % threads
+-print "Read length: %s" % read_length
+-print "Genome coverage: %s" % coverage
+-print "Number of libraries: %s" % len(args_list)
+-print "Output directory: %s" % reads_dir
++print("Threads to use: %s" % threads)
++print("Read length: %s" % read_length)
++print("Genome coverage: %s" % coverage)
++print("Number of libraries: %s" % len(args_list))
++print("Output directory: %s" % reads_dir)
+ 
+ # Simulate libraries in parallel
+ parallel_subprocess(command, args_list, threads)
+--- ./training/training.py	(original)
++++ ./training/training.py	(refactored)
+@@ -116,8 +116,8 @@
+ 	fold_size = n/x
+ 	test_start = fold_size * i - fold_size
+ 	test_stop = test_start + fold_size - 1
+-	test_indexes = range(test_start, test_stop + 1)
+-	train_indexes = range(n)
++	test_indexes = list(range(test_start, test_stop + 1))
++	train_indexes = list(range(n))
+ 	for j in test_indexes:
+ 		train_indexes.remove(j)
+ 	return train_indexes, test_indexes
+@@ -294,7 +294,7 @@
+ 			best_hits[read_id] = hit
+ 		elif best_hits[read_id][-1] < score:
+ 			best_hits[read_id] = hit
+-	return best_hits.values()
++	return list(best_hits.values())
+ 
+ def aggregate_hits(hits, fams, gene2len):
+ 	""" Aggregate hits to each gene family """
+@@ -328,7 +328,7 @@
+ 				# find best hits
+ 				best_hits = find_best_hits(hits_score_filt)
+ 				# count hits to each marker familes
+-				for fam, stats in aggregate_hits(best_hits, fams, gene2len).iteritems():
++				for fam, stats in aggregate_hits(best_hits, fams, gene2len).items():
+ 					record = [str(x) for x in [fam, aln_cov, max_pid, min_score, stats['hits'], stats['aln'], stats['cov']]]
+ 					# write results to p_out
+ 					f_out.write('\t'.join(record)+'\n')
diff --git a/recipes/microbecensus/meta.yaml b/recipes/microbecensus/meta.yaml
index ed7a74efea3b9..47e4e30888e2b 100644
--- a/recipes/microbecensus/meta.yaml
+++ b/recipes/microbecensus/meta.yaml
@@ -1,34 +1,35 @@
 {% set name = "microbecensus" %}
 {% set version = "1.1.1" %}
-{% set file_ext = "tar.gz" %}
-{% set hash_type = "sha256" %}
-{% set hash_value = "9ec037a345c400cdfd1fc4b4f53400a45180810303603e289f20886810397e74" %}
 
 package:
   name: '{{ name|lower }}'
   version: '{{ version }}'
 
 source:
-  url: https://github.com/snayfach/MicrobeCensus/archive/v{{ version }}.{{ file_ext }}
-  '{{ hash_type }}': '{{ hash_value }}'
+  url: https://github.com/snayfach/MicrobeCensus/archive/v{{ version }}.tar.gz
+  sha256: 9ec037a345c400cdfd1fc4b4f53400a45180810303603e289f20886810397e74
+  patches:
+    - 2to3.patch
 
 extra:
   skip-lints:
     - setup_py_install_args
 
 build:
-  number: 1
-  skip: True  # [not py27]
+  number: 2
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
   script: python -m pip install --no-deps --ignore-installed .
 
 requirements:
   host:
-    - python >=2.7,<3
+    - python >=3.6
     - biopython
     - numpy
     - pip
   run:
-    - python >=2.7,<3
+    - python >=3.6
     - biopython
     - numpy
 
@@ -37,7 +38,7 @@ test:
     - microbe_census
     - tests
   commands:
-    - run_microbe_census.py -h > /dev/null
+    - run_microbe_census.py -h
 
 about:
   home: https://github.com/snayfach/MicrobeCensus
diff --git a/recipes/microhapdb/meta.yaml b/recipes/microhapdb/meta.yaml
index ae8d63485b891..166276f7667bc 100644
--- a/recipes/microhapdb/meta.yaml
+++ b/recipes/microhapdb/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.9" %}
-{% set sha256 = "ea613bdfa5a90792bb8724469966b55e012194ba49263afdafba5805c4f74d83" %}
+{% set version = "0.11" %}
+{% set sha256 = "5cf7c52adb49682e62ac82fb65884203488f5ac4f82db730c29e378f8c7ec93c" %}
 
 package:
   name: microhapdb
@@ -10,6 +10,8 @@ source:
   sha256: '{{sha256}}'
 
 build:
+  run_exports:
+    - {{ pin_subpackage("microhapdb", max_pin="x.x") }}
   noarch: python
   entry_points:
     - microhapdb = microhapdb.cli:main
@@ -18,10 +20,10 @@ build:
 
 requirements:
   host:
-    - python >=3
+    - python >=3.7,<3.12
     - pip
   run:
-    - python >=3
+    - python >=3.7,<3.12
     - pandas >=1.2
     - pyfaidx >=0.7
 
diff --git a/recipes/microview/meta.yaml b/recipes/microview/meta.yaml
new file mode 100644
index 0000000000000..57cd612dff820
--- /dev/null
+++ b/recipes/microview/meta.yaml
@@ -0,0 +1,61 @@
+{% set name = "microview" %}
+{% set version = "0.11.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/MicroView-{{ version }}.tar.gz
+  sha256: c6713e83ee1488ed7baec6828513ffda6d6efa44f15e61821cf62d23e5568149
+
+build:
+  entry_points:
+    - microview = microview.cli:main
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  build:
+   - {{ compiler('c') }}
+  host:
+    - python >=3.8
+    - pip
+    - cython
+  run:
+    - python >=3.8
+    - scipy
+    - cython
+    - decorator
+    - scikit-bio
+    - pandas
+    - numpy
+    - plotly
+    - jinja2
+    - rich
+    - rich-click
+    - click-option-group
+    - frictionless >=4.32.0,<5
+
+test:
+  imports:
+    - microview
+  commands:
+    - pip check
+    - microview --help
+  requires:
+    - pip
+
+about:
+  home: https://github.com/jvfe/microview
+  summary: Generate reports from taxonomic classification data
+  license: BSD-3-Clause
+  license_file: LICENSE
+
+extra:
+  skip-lints:
+    - cython_must_be_in_host # Cython needs to be in run as well
+  recipe-maintainers:
+    - jvfe
diff --git a/recipes/midsv/meta.yaml b/recipes/midsv/meta.yaml
index e58c5dac30547..7193ae74b64af 100644
--- a/recipes/midsv/meta.yaml
+++ b/recipes/midsv/meta.yaml
@@ -1,23 +1,25 @@
 {% set name = "midsv" %}
-{% set version = "0.10.0" %}
+{% set version = "0.11.0" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/midsv-{{ version }}.zip
-  sha256: 91bf48a117cc1cb18875b428442af8e0e0e15d9d51ead393e01a9aea060d9294
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/midsv-{{ version }}.tar.gz
+  sha256: 713a164c4bce68f1caa72d50f7b7eef7a62b869bd65f2aebf8024d33ba6cc5b8
 
 build:
   noarch: python
   script: {{ PYTHON }} -m pip install . -vv
   number: 0
+  run_exports:
+    - {{ pin_subpackage('midsv', max_pin="x") }}
 
 requirements:
   host:
-    - pip
     - python >=3.7
+    - pip
   run:
     - python >=3.7
 
@@ -30,7 +32,7 @@ test:
     - pip
 
 about:
-  home: https://github.com/akikuno/mids
+  home: https://github.com/akikuno/midsv
   summary: Python module to convert SAM to MIDSV format.
   license: MIT
   license_file: LICENSE
diff --git a/recipes/mimseq/meta.yaml b/recipes/mimseq/meta.yaml
index 45e32334d7148..8ed6c9100ae08 100644
--- a/recipes/mimseq/meta.yaml
+++ b/recipes/mimseq/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "mimseq" %}
-{% set version = "1.3.5" %}
+{% set version = "1.3.8" %}
 
 package:
   name: mimseq
@@ -7,23 +7,26 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 6e0a1f156fed50ec721f8450767f7854fe26a6b2f5fd9d26844472a2b3bcb41f
+  sha256: 1d2a76c4f45d2388c7c5eb7112c3446e41cd8a9663949c4c76d14df0abd42ae5
 
 build:
+  run_exports:
+    - {{ pin_subpackage("mimseq", max_pin="x") }}
   number: 0
   noarch: python
   entry_points:
     - mimseq = mimseq.mimseq:main
-  script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
+  script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vvv
 
 requirements:
   host:
     - python =3.7
+    - pip
   run:
     - python =3.7
     - r-base >=4.1
     - biopython >=1.79
-    - matplotlib-base >=3.4.2 
+    - matplotlib-base >=3.4.2
     - numpy >=1.21.1
     - pandas >=1.3.1
     - requests >=2.26.0
@@ -33,8 +36,8 @@ requirements:
     - seaborn-base >=0.11.1
     - statsmodels >=0.13.1
     - infernal >=1.1.4
-    - blast =2.10.1
-    - gmap 2019.02.26
+    - blast >=2.10.1
+    - gmap <=2019.02.26
     - samtools >=1.11
     - bedtools >=2.30.0
     - r-ggplot2 >=3.3.5
diff --git a/recipes/miniasm/meta.yaml b/recipes/miniasm/meta.yaml
index 2f319afb180cf..1d5f46060d2d0 100644
--- a/recipes/miniasm/meta.yaml
+++ b/recipes/miniasm/meta.yaml
@@ -5,7 +5,9 @@ package:
   version: {{ version }}
 
 build:
-  number: 2
+  number: 3
+  run_exports:
+    - {{ pin_subpackage('miniasm', max_pin='x.x') }}
 
 source:
   url: https://github.com/lh3/miniasm/archive/refs/tags/v0.3.tar.gz
@@ -29,3 +31,7 @@ about:
   license: MIT
   license_file: LICENSE.txt
   summary: Ultrafast de novo assembly for long noisy reads (though having no consensus step)
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/minigraph/build.sh b/recipes/minigraph/build.sh
index 5f145077a6afa..36a34c892d737 100644
--- a/recipes/minigraph/build.sh
+++ b/recipes/minigraph/build.sh
@@ -2,7 +2,8 @@
 
 mkdir -p $PREFIX/bin
 
-export CPATH=${PREFIX}/include
+export C_INCLUDE_PATH="${PREFIX}/include"
+export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
 
-make  CC="${CC} ${CFLAGS} ${CPPFLAGS} ${LDFLAGS}"  CXX="${CXX} ${CXXFLAGS} ${CPPFLAGS} ${LDFLAGS}"
+make CC="${CC} ${CFLAGS} ${CPPFLAGS} ${LDFLAGS}" CXX="${CXX} ${CXXFLAGS} ${CPPFLAGS} ${LDFLAGS}"
 cp minigraph $PREFIX/bin
diff --git a/recipes/minigraph/meta.yaml b/recipes/minigraph/meta.yaml
index 22b50fddd42fd..6a1a93b243c54 100644
--- a/recipes/minigraph/meta.yaml
+++ b/recipes/minigraph/meta.yaml
@@ -1,15 +1,18 @@
-{% set version = "0.20" %}
+{% set name = "minigraph" %}
+{% set version = "0.21" %}
 
 package:
-  name: minigraph
+  name: {{ name }}
   version: {{ version }}
 
 source:
   url: https://github.com/lh3/minigraph/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: ef695e69d57bbc34478d7d3007e4153422ee2e3534e4f3fcbb8930cfaa5e1dc0
+  sha256: 4272447393f0ae1e656376abe144de96cbafc777414d4c496f735dd4a6d3c06a
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('minigraph', max_pin="x.x") }}
 
 requirements:
   build:
@@ -25,8 +28,11 @@ test:
 about:
   home: https://github.com/lh3/minigraph
   license: MIT
+  license_family: MIT
   license_file: LICENSE.txt
   summary: Proof-of-concept seq-to-graph mapper and graph generator
+  doc_url: https://lh3.github.io/minigraph/minigraph.html
+  dev_url: https://github.com/lh3/minigraph
 
 extra:
   identifiers:
diff --git a/recipes/minimap2/build.sh b/recipes/minimap2/build.sh
index 0d34016cea4e9..b6f518c35e81b 100644
--- a/recipes/minimap2/build.sh
+++ b/recipes/minimap2/build.sh
@@ -1,9 +1,24 @@
 #!/bin/bash
 
-mkdir -p $PREFIX/bin
+set -xe
 
-export CPATH=${PREFIX}/include
+mkdir -p ${PREFIX}/bin ${PREFIX}/lib ${PREFIX}/include
 
-make INCLUDES="-I$PREFIX/include" CFLAGS="-g -Wall -O2 -Wc++-compat -L$PREFIX/lib" minimap2 sdust
-cp minimap2 misc/paftools.js $PREFIX/bin
-cp sdust $PREFIX/bin
+case $(uname -m) in
+    aarch64)
+        ARCH_OPTS="aarch64=1"
+        ;;
+    *)
+        ARCH_OPTS=""
+        ;;
+esac
+
+make CFLAGS="-g -Wall -O2 -Wc++-compat -I${PREFIX}/include -L${PREFIX}/lib" \
+    ${ARCH_OPTS} -j${CPU_COUNT} minimap2 sdust
+
+chmod 755 minimap2 && chmod 755 sdust
+
+cp minimap2 misc/paftools.js ${PREFIX}/bin
+cp sdust ${PREFIX}/bin
+cp libminimap2.a ${PREFIX}/lib
+cp *.h ${PREFIX}/include
diff --git a/recipes/minimap2/meta.yaml b/recipes/minimap2/meta.yaml
index 913f843071c53..7c2bc89fb1520 100644
--- a/recipes/minimap2/meta.yaml
+++ b/recipes/minimap2/meta.yaml
@@ -1,15 +1,20 @@
-{% set version = "2.26" %}
+{% set name = "minimap2" %}
+{% set version = "2.28" %}
 
 package:
-  name: minimap2
+  name: {{ name }}
   version: {{ version }}
 
 source:
-  url: https://github.com/lh3/minimap2/archive/v{{ version }}.tar.gz
-  sha256: f4c8c3459c7b87e9de6cbed7de019b48d9337c2e46b87ba81b9f72d889420b3c
+  url: https://github.com/lh3/{{ name }}/archive/v{{ version }}.tar.gz
+  sha256: 5ea6683b4184b5c49f6dbaef2bc5b66155e405888a0790d1b21fd3c93e474278
+  patches:
+    - override-makefile.patch
 
 build:
   number: 1
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   build:
@@ -26,9 +31,22 @@ test:
     - minimap2 2>&1 | grep 'Usage'
     - paftools.js version | grep {{ version }}
     - sdust  2>&1 | grep 'Usage'
+    - test -e $PREFIX/lib/libminimap2.a
+    - test -e $PREFIX/include/minimap.h
 
 about:
-  home: https://github.com/lh3/minimap2
+  home: "https://github.com/lh3/minimap2"
   license: MIT
-  license_file: LICENSE.txt
+  license_family: MIT
+  license_file: "LICENSE.txt"
   summary: 'A versatile pairwise aligner for genomic and spliced nucleotide sequences.'
+  dev_url: "https://github.com/lh3/minimap2"
+  doc_url: "https://lh3.github.io/minimap2/minimap2.html"
+
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:{{ name| lower }}
+    - usegalaxy-eu:{{ name| lower }}
+    - doi:10.1093/bioinformatics/bty191
\ No newline at end of file
diff --git a/recipes/minimap2/override-makefile.patch b/recipes/minimap2/override-makefile.patch
new file mode 100644
index 0000000000000..154fb53273159
--- /dev/null
+++ b/recipes/minimap2/override-makefile.patch
@@ -0,0 +1,34 @@
+diff --git i/Makefile w/Makefile
+index 17b13b6..f0767c8 100644
+--- i/Makefile
++++ w/Makefile
+@@ -20,22 +20,22 @@ else                # if sse2only is defined
+ endif
+ else				# if arm_neon is defined
+ 	OBJS+=ksw2_extz2_neon.o ksw2_extd2_neon.o ksw2_exts2_neon.o
+-    INCLUDES+=-Isse2neon
++	override INCLUDES+=-Isse2neon
+ ifeq ($(aarch64),)	#if aarch64 is not defined
+-	CFLAGS+=-D_FILE_OFFSET_BITS=64 -mfpu=neon -fsigned-char
++	override CFLAGS+=-D_FILE_OFFSET_BITS=64 -mfpu=neon -fsigned-char
+ else				#if aarch64 is defined
+-	CFLAGS+=-D_FILE_OFFSET_BITS=64 -fsigned-char
++	override CFLAGS+=-D_FILE_OFFSET_BITS=64 -fsigned-char
+ endif
+ endif
+ 
+ ifneq ($(asan),)
+-	CFLAGS+=-fsanitize=address
+-	LIBS+=-fsanitize=address -ldl
++	override CFLAGS+=-fsanitize=address
++	override LIBS+=-fsanitize=address -ldl
+ endif
+ 
+ ifneq ($(tsan),)
+-	CFLAGS+=-fsanitize=thread
+-	LIBS+=-fsanitize=thread -ldl
++	override CFLAGS+=-fsanitize=thread
++	override LIBS+=-fsanitize=thread -ldl
+ endif
+ 
+ .PHONY:all extra clean depend
diff --git a/recipes/miniprot/meta.yaml b/recipes/miniprot/meta.yaml
index f8142a26a402f..d3ee72d13b2c3 100644
--- a/recipes/miniprot/meta.yaml
+++ b/recipes/miniprot/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.12" %}
+{% set version = "0.13" %}
 {% set name = "miniprot" %}
-{% set sha256 = "869df52d8a3d350e0a5ba6eb0d1685e78bb7087ace9870d196f5fb4761c3a692" %}
+{% set sha256 = "be12d98d998beb78e4e06350c03d2f188bcdf3245d6bcaf43e2cc80785a617a4" %}
 
 package:
   name: "{{ name }}"
@@ -8,6 +8,8 @@ package:
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 source:
   url: "https://github.com/lh3/miniprot/archive/refs/tags/v{{ version }}.tar.gz"
diff --git a/recipes/minute/meta.yaml b/recipes/minute/meta.yaml
index 10b06c80d2c10..7de1dc0076d35 100644
--- a/recipes/minute/meta.yaml
+++ b/recipes/minute/meta.yaml
@@ -1,17 +1,19 @@
-{% set version = "0.3.3" %}
+{% set version = "0.6.0" %}
 
 package:
   name: minute
   version: {{ version }}
 
 source:
-  url: https://github.com/NBISweden/minute/archive/v{{ version }}.tar.gz
-  sha256: de027ad8203335041f9bfb95d6b811fbcce2e469aaa89de237c70845800d164f
+  url: https://github.com/NBISweden/minute/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 168077b9bc369d8e4bbda51133d00a344dc33716e2a070311cfacaf792b131d7
 
 build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps -vv"
+  run_exports:
+    - {{ pin_subpackage('minute', max_pin='x.x') }}
 
 requirements:
   host:
diff --git a/recipes/mira-moods/meta.yaml b/recipes/mira-moods/meta.yaml
new file mode 100644
index 0000000000000..d3c573628ff38
--- /dev/null
+++ b/recipes/mira-moods/meta.yaml
@@ -0,0 +1,54 @@
+{% set name = "mira-moods" %}
+{% set version = "1.9.4.2" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/mira-moods-{{ version }}.tar.gz
+  sha256: e694e37c7487286801bffcda3e0576157960007919dd5ceb8b5a1626dc2968e1
+
+build:
+  script: {{ PYTHON }} -m pip install . -vv
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+  host:
+    - pip
+    - python >=3.5
+    - swig
+  run:
+    - python
+    - swig
+
+    
+test:
+  imports:
+    - MOODS
+  commands:
+    - pip check
+  requires:
+    - pip
+
+
+about:
+  home: https://www.cs.helsinki.fi/group/pssmfind/
+  summary: 'MOODS: Motif Occurrence Detection Suite'
+  license: MIT AND GPL-3.0
+  license_file:
+    - COPYING.BIOPYTHON
+    - COPYING.GPLv3
+
+extra:
+  recipe-maintainers:
+    - AllenWLynch
+  identifiers:
+    - biotools:MOODS
+    - doi:10.1109/TCBB.2009.35
\ No newline at end of file
diff --git a/recipes/mira-multiome/meta.yaml b/recipes/mira-multiome/meta.yaml
index d897c3b0eddf6..98ec59647c8a5 100644
--- a/recipes/mira-multiome/meta.yaml
+++ b/recipes/mira-multiome/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "mira-multiome" %}
-{% set version = "2.1.0" %}
+{% set version = "2.1.1" %}
 
 package:
   name: {{ name|lower }}
@@ -7,42 +7,39 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/mira-multiome-{{ version }}.tar.gz
-  sha256: c28a8fe8388f35c020815e27ad4d046a796680c4e43400decd53952e0502159d
+  sha256: f981bc40542097c3892cb02efca0c25766dfa0bbafcbd4e94ea18b3e5e27157b
 
 build:
   noarch: python
-  script: {{ PYTHON }} -m pip install . -vv
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
   number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   host:
-    - python >=3.7
+    - python >=3.7,<3.12
     - wheel
     - pip
-    - setuptools >=35.0
     - setuptools_scm
   run:
-    - python >=3.7
-    - pytorch <2,>=1.8.0
-    - pyro-ppl <2,>=1.5.2
-    - networkx <3,>=2.3
-    - optuna <3,>=2.8
-    - anndata <1,>=0.7.6
+    - python >=3.7,<3.12
+    - pytorch >=1.8.0,<2
+    - pyro-ppl >=1.5.2,<2
+    - networkx >=2.3,<3
+    - optuna >=2.8,<3
+    - anndata >=0.7.6,<1
     - moods >=1.9.4.1
-    - pyfaidx <1,>=0.5
-    - matplotlib-base <4,>=3.4
+    - pyfaidx >=0.5,<1
+    - matplotlib-base >=3.4,<4
     - lisa2 >=2.3.0
-    - requests <3,>=2
+    - requests >=2,<3
     - tqdm
     - tensorboard
 
 test:
   imports:
     - mira
-  commands:
-    - pip check
-  requires:
-    - pip
 
 about:
   home: https://mira-multiome.readthedocs.io/en/latest/
diff --git a/recipes/mirmachine/meta.yaml b/recipes/mirmachine/meta.yaml
index 0d9b2844285c3..aeb3d30ca4d51 100644
--- a/recipes/mirmachine/meta.yaml
+++ b/recipes/mirmachine/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "MirMachine" %}
-{% set version = "0.2.12" %}
+{% set version = "0.2.13" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 5e55e5d4358d44e5f59f610476f1420a565c1bb916d1de1323d984d02313232c
+  sha256: 0a2d7d466a391b07a358ee543c34814974f8273cd42ce37f5ccb757169649411
 
 build:
   noarch: python
   number: 0
   script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_compatible("MirMachine", max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/mitgard/meta.yaml b/recipes/mitgard/meta.yaml
index 2f83790b1ea71..7c3341012ee75 100644
--- a/recipes/mitgard/meta.yaml
+++ b/recipes/mitgard/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.0" %}
+{% set version = "1.1" %}
 
 package:
   name: mitgard
@@ -6,32 +6,36 @@ package:
 
 source:
   url: https://github.com/pedronachtigall/MITGARD/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 97bf3299242c573e744ded016f70f7e0d3a07c3f4b62ce88d084b9a2c3a9dabd
+  sha256: f00bf3d7795e6d320416cb1fb856d8dee936d95055f77b19ac74e1d42e88ed5f
 
 build:
   noarch: generic
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('mitgard', max_pin="x") }}
 
 requirements:
-  host:
-    - python>=3.6
-
   run:
-    - samtools=1.9
-    - bowtie2=2.3
-    - minimap2=2.17
-    - trinity=2.8.5
-    - spades=3.13.1
-    - python>=3.6
-    - biopython=1.69
+    - samtools
+    - bowtie2
+    - minimap2
+    - trinity =2.8.5
+    - spades =3.13.1
+    - python >=3.6
+    - biopython
+    - hifiasm
+    - canu
+    - blast
 
 test:
   commands:
     - "MITGARD.py -h"
+    - "MITGARD-LR.py -h"
 
 about:
   home: https://github.com/pedronachtigall/MITGARD
-  license: GPLv3
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE.txt
   summary: "Mitochondrial Genome Assembly from RNA-seq Data."
   doc_url: https://github.com/pedronachtigall/MITGARD
diff --git a/recipes/mitofinder/build.sh b/recipes/mitofinder/build.sh
index afce669dfc433..4d994a1a4c6d3 100644
--- a/recipes/mitofinder/build.sh
+++ b/recipes/mitofinder/build.sh
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/bin/bash
 
 ./install.sh
 
diff --git a/recipes/mitofinder/meta.yaml b/recipes/mitofinder/meta.yaml
index d7df107b87e67..fed796d0e41aa 100644
--- a/recipes/mitofinder/meta.yaml
+++ b/recipes/mitofinder/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.4.1" %}
+{% set version = "1.4.2" %}
 
 package:
     name: mitofinder
@@ -6,15 +6,21 @@ package:
 
 source:
     url: https://github.com/RemiAllio/MitoFinder/archive/v{{ version }}.tar.gz
-    sha256: c80a0108c64813dce8c3f653958ed5d6bddc28a0c801fe4d477a173c3a58fe45
+    sha256: 2d6d3925fb014777df97f272134143cc518944ae05d000a44ada2862d46ec95a
 
 build:
-  number: 1
-  skip: true  # [not py2k]
+  number: 0
+  skip: True  # [not py2k]
+  run_exports:
+    - {{ pin_subpackage('mitofinder', max_pin="x") }}
 
 requirements:
   build:
     - {{ compiler('c') }}
+    - make
+    - autoconf
+    - automake
+    - libtool
   host:
     - python
   run:
@@ -35,5 +41,7 @@ test:
 about:
     home: https://github.com/RemiAllio/MitoFinder
     license: MIT
+    license_family: MIT
     license_file: License/LICENSE
     summary: Mitofinder is a pipeline to assemble mitochondrial genomes and annotate mitochondrial genes from trimmed read sequencing data.
+    dev_url: https://github.com/RemiAllio/MitoFinder
diff --git a/recipes/mitos/meta.yaml b/recipes/mitos/meta.yaml
index 03969c94c83a3..666d07b5d40bf 100644
--- a/recipes/mitos/meta.yaml
+++ b/recipes/mitos/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "mitos" %}
-{% set version = "2.1.3" %}
+{% set version = "2.1.9" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,34 +7,36 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 0a5bee0882a957457426baaa36655d968fbd36523e3fb06d96e2401f9f9bd285
+  sha256: 88fc8980c815ae8497518ee7ff58ff69e51b1a35c1efe2ae9b0925b7c4f364f5
 
 build:
   number: 0
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('mitos', max_pin="x.x") }}
 
 requirements:
   host:
     - pip
     - python >=3
   run:
-    - biopython <1.68
+    - biopython <1.82
     - python >=3
-    - blast =2.9
+    - blast >=2.9
     - hmmer =3.2
-    - infernal =1.1
-    - viennarna <2
-    - r-base >=3
+    - infernal >=1.1.5
+    - viennarna
+    - r-base
     - r-ggplot2
     - r-reshape2
     - openjdk >8
-    # biopython -> reportlab -> pillow
+    - reportlab
     # - does not work with newest libtiff 
     # - force to not install it from defaults
     # xref https://github.com/conda-forge/pillow-feedstock/issues/135
     - conda-forge::pillow
-    - conda-forge::libtiff <4.5
+    - conda-forge::libtiff
 
 test:
   imports:
@@ -59,6 +61,8 @@ test:
     - mitos.webserver
   commands:
     - runmitos.py -h
+    - 'R -e "library(''reshape2'')"'
+    - 'R -e "library(''ggplot2'')"'
 
 about:
   home: http://mitos.bioinf.uni-leipzig.de
diff --git a/recipes/mitos/mitos1/meta.yaml b/recipes/mitos/mitos1/meta.yaml
index 8fb993e5a0e14..1c0ab5570f7fa 100644
--- a/recipes/mitos/mitos1/meta.yaml
+++ b/recipes/mitos/mitos1/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "mitos" %}
-{% set version = "1.1.1" %}
+{% set version = "1.1.7" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,32 +7,34 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: be603dd526d7123e3652e47aecda010e7d3ab7d6af93a9c138f965ca4cf44005
+  sha256: 53ad3d1c8fefa1ec8de176905c6f953976a020391d86aa84600ef7244f6ec1ef
 
 build:
-  number: 1
+  number: 0
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('mitos', max_pin="x.x") }}
 
 requirements:
   host:
     - pip
     - python >=3
   run:
-    - biopython <1.68
+    - biopython <1.82
     - python >=3
     - blast-legacy =2.2
     - infernal =1.0
-    - viennarna <2
-    - r-base >=4
+    - viennarna
     - r-ggplot2
+    - r-reshape2
     - openjdk >8
-    # biopython -> reportlab -> pillow
+    - reportlab
     # - does not work with newest libtiff 
     # - force to not install it from defaults
     # xref https://github.com/conda-forge/pillow-feedstock/issues/135
     - conda-forge::pillow
-    - conda-forge::libtiff <4.5
+    - conda-forge::libtiff
 
 test:
   imports:
@@ -58,6 +60,8 @@ test:
     - mitos.webserver
   commands:
     - runmitos.py -h
+    - 'R -e "library(''reshape2'')"'
+    - 'R -e "library(''ggplot2'')"'
 
 about:
   home: http://mitos.bioinf.uni-leipzig.de
diff --git a/recipes/mkdesigner/meta.yaml b/recipes/mkdesigner/meta.yaml
index f0615cbbd2443..3585d115b792d 100644
--- a/recipes/mkdesigner/meta.yaml
+++ b/recipes/mkdesigner/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "mkdesigner" %}
-{% set version = "0.1.1" %}
+{% set version = "0.3.4" %}
 
 package:
   name: {{ name|lower }}
@@ -7,7 +7,7 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/mkdesigner-{{ version }}.tar.gz
-  sha256: d7d6cbe0a4f470aa4bbc28f9e232a255ee2edc0c3bf62f40c60d62ad6af28a6d
+  sha256: 832372167e966e12cc0551cad936ed8049555da474fa3a4ef71574215001bf3a
 
 build:
   entry_points:
@@ -15,12 +15,14 @@ build:
     - mkprimer = mkdesigner.mkprimer:main
     - mkselect = mkdesigner.mkselect:main
   noarch: python
-  script: {{ PYTHON }} -m pip install . -vv
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
   number: 0
+  run_exports:
+    - {{ pin_subpackage('mkdesigner', max_pin="x") }}
 
 requirements:
   host:
-    - python
+    - python >=3.8,<4.0
     - pip
   run:
     - python >=3.8,<4.0
@@ -30,23 +32,22 @@ requirements:
     - blast >=2.14.0,<3.0.0
     - gatk4 >=4.4.0.0,<5.0.0.0
     - picard >=2.18.29,<3.0.0
-    - r-base >=4.2.3, <5.0.0
+    - r-base >=4.2.3,<5.0.0
+    - matplotlib-base
 
 test:
   imports:
     - mkdesigner
   commands:
-    - pip check
     - mkvcf --help
     - mkprimer --help
     - mkselect --help
-  requires:
-    - pip
 
 about:
   home: https://github.com/KChigira/mkdesigner/
   summary: Genome-wide design of markers for PCR-based genotyping from NGS data.
   license: MIT
+  license_family: MIT
   license_file: LICENSE
 
 extra:
diff --git a/recipes/mmquant/meta.yaml b/recipes/mmquant/meta.yaml
index bdc9eccd911ad..9e281487b471e 100644
--- a/recipes/mmquant/meta.yaml
+++ b/recipes/mmquant/meta.yaml
@@ -1,16 +1,18 @@
 {% set name = "mmquant" %}
-{% set version = "1.0.5" %}
+{% set version = "1.0.9" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 source:
   url: https://bitbucket.org/mzytnicki/multi-mapping-counter/get/{{ version }}.tar.gz
-  sha256: efe5cb32332e8e19360836a33b5a5aecc28a2a3b34a8c000291ff1c6022e2c41
+  sha256: 208852b8efa85d9bf5b88906dde329d0c312a90897c7b00481c87116a12ea2eb
 
 requirements:
   build:
diff --git a/recipes/mmseqs2-server/build.sh b/recipes/mmseqs2-server/build.sh
new file mode 100644
index 0000000000000..b6487ad6ceae8
--- /dev/null
+++ b/recipes/mmseqs2-server/build.sh
@@ -0,0 +1,6 @@
+#!/bin/bash
+
+cd backend
+go build -o ./mmseqs-server
+install -d "${PREFIX}/bin"
+install mmseqs-server "${PREFIX}/bin/"
diff --git a/recipes/mmseqs2-server/meta.yaml b/recipes/mmseqs2-server/meta.yaml
new file mode 100644
index 0000000000000..0889f5d633d38
--- /dev/null
+++ b/recipes/mmseqs2-server/meta.yaml
@@ -0,0 +1,41 @@
+{% set version = "8-c4b9644" %}
+{% set sha256 = "d0adad84518c80b8f47f9c50412540ce64ab17a801df678921130fa5ccfa9202" %}
+
+package:
+  name: mmseqs2-server
+  version: {{ version|replace("-", ".")  }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('mmseqs2-server', max_pin=None) }}
+
+source:
+  url: https://github.com/soedinglab/mmseqs2-app/archive/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+requirements:
+  build:
+    - {{ compiler('go') }}
+  run:
+    - mmseqs2
+    - foldseek
+
+test:
+  commands:
+    - which mmseqs-server
+
+about:
+  home: https://github.com/soedinglab/MMseqs2-App
+  license: GPLv3
+  license_file: LICENSE
+  summary: "Server for MMseqs2, Foldseek and ColabFold"
+
+extra:
+  identifiers:
+    - doi:10.1093/bioinformatics/bty1057
+    - biotools:mmseqs2
+  recipe-maintainers:
+    - milot-mirdita
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/mmseqs2/build.sh b/recipes/mmseqs2/build.sh
index dccd8da45922c..b06956020200b 100644
--- a/recipes/mmseqs2/build.sh
+++ b/recipes/mmseqs2/build.sh
@@ -1,7 +1,18 @@
 #!/bin/bash
 
+ARCH_BUILD=""
+case $(uname -m) in
+    x86_64) ARCH_BUILD="-DHAVE_SSE4_1=1" ;;
+    arm64|aarch64) ARCH_BUILD="-DHAVE_ARM8=1" ;;
+esac
+
+if [ -z "${ARCH_BUILD}" ]; then
+    echo "Invalid architecture"
+    exit 1
+fi
+
 mkdir build
 cd build
-cmake -DCMAKE_INSTALL_PREFIX="${PREFIX}" -DHAVE_TESTS=0 -DHAVE_MPI=0 -DHAVE_SSE4_1=1 -DVERSION_OVERRIDE="${PKG_VERSION}" ..
+cmake -DCMAKE_INSTALL_PREFIX="${PREFIX}" -DHAVE_TESTS=0 -DHAVE_MPI=0 ${ARCH_BUILD} -DVERSION_OVERRIDE="${PKG_VERSION}" ..
 make -j${CPU_COUNT} ${VERBOSE_CM}
 make install
diff --git a/recipes/mmseqs2/meta.yaml b/recipes/mmseqs2/meta.yaml
index 670a0ce949518..7343528cfb308 100644
--- a/recipes/mmseqs2/meta.yaml
+++ b/recipes/mmseqs2/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "14-7e284" %}
-{% set sha256 = "a15fd59b121073fdcc8b259fc703e5ce4c671d2c56eb5c027749f4bd4c28dfe1" %}
+{% set version = "15-6f452" %}
+{% set sha256 = "7115ac5a7e2a49229466806aaa760d00204bb08c870e3c231b00e525c77531dc" %}
 
 package:
   name: mmseqs2
@@ -7,6 +7,8 @@ package:
 
 build:
   number: 2
+  run_exports:
+    - {{ pin_subpackage('mmseqs2', max_pin=None) }}
 
 source:
   url: https://github.com/soedinglab/mmseqs2/archive/{{ version }}.tar.gz
@@ -50,3 +52,5 @@ extra:
     - doi:10.1101/2020.11.27.401018
     - biotools:mmseqs2
     - biotools:linclust
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/mob_suite/meta.yaml b/recipes/mob_suite/meta.yaml
index 24e48f087a854..6109fc03c7d76 100644
--- a/recipes/mob_suite/meta.yaml
+++ b/recipes/mob_suite/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "mob_suite" %}
-{% set version = "3.1.5" %}
-{% set sha256 = "14452efb25fb431ec67efdf764bc4409f09c8061a8bee3f40fce39fc37d70c68" %}
+{% set version = "3.1.8" %}
+{% set sha256 = "aa20c989b6d6dc624612a4e9821afac00b170168ca4d860dd00e104c5881b3f3" %}
 
 package:
   name: {{ name|lower }}
@@ -9,15 +9,15 @@ package:
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/mob_suite-{{ version }}.tar.gz
   sha256: {{ sha256 }}
-  patches:
-    - setup.py.patch
+  
 
 build:
-  number: 0
+  number: 1
   noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
   script: {{ PYTHON }} -m pip install . --use-pep517 --no-deps -vvv
   entry_points:
-    - Sequenoscope=Sequenoscope:main
     - mob_init=mob_suite.mob_init:main
     - mob_recon=mob_suite.mob_recon:main
     - mob_cluster=mob_suite.mob_cluster:main
@@ -30,13 +30,13 @@ requirements:
     - pytest-runner
   run:
     - python >=3.7
-    - numpy >=1.11.1,<1.23.5
+    - {{ pin_compatible('numpy', max_pin="x") }}
+    - pandas >=0.22,<=1.5.3
     - pytables
-    - pandas >=0.22.0,<=1.0.5
-    - biopython
-    - pycurl
-    - scipy
-    - ete3
+    - biopython >=1.8,<2
+    - {{ pin_compatible('pycurl') }}
+    - {{ pin_compatible('scipy') }}
+    - ete3 ==3.1.3
     - six
     - blast >=2.9.0
     - mash >=2.0
@@ -44,10 +44,13 @@ requirements:
 test:
   imports:
     - mob_suite
+  requires:
+    - pytest 
   commands:
     - mob_recon --help
     - mob_cluster --help
     - mob_typer --help
+    - mob_init --help
 
 about:
   home: 'https://pypi.org/project/mob-suite/'
diff --git a/recipes/mob_suite/run_test.sh b/recipes/mob_suite/run_test.sh
new file mode 100644
index 0000000000000..817113f2f503d
--- /dev/null
+++ b/recipes/mob_suite/run_test.sh
@@ -0,0 +1,2 @@
+#!/usr/bin/env bash
+pytest --pyargs mob_suite.tests.test_mobrecon::test_mob_recon_typical_run
diff --git a/recipes/mob_suite/setup.py.patch b/recipes/mob_suite/setup.py.patch
deleted file mode 100644
index 45cb973982b4c..0000000000000
--- a/recipes/mob_suite/setup.py.patch
+++ /dev/null
@@ -1,13 +0,0 @@
-diff --git a/setup.py b/setup.py
-index d6c8f9e..b905b11 100644
---- a/setup.py
-+++ b/setup.py
-@@ -58,7 +58,7 @@ setup(
- 
-     entry_points={
-         'console_scripts': [
--            'Sequenoscope=Sequenoscope:main'
-+            'Sequenoscope=Sequenoscope:main',
-             'mob_init=mob_suite.mob_init:main',
-             'mob_recon=mob_suite.mob_recon:main',
-             'mob_cluster=mob_suite.mob_cluster:main',
diff --git a/recipes/mockinbird/meta.yaml b/recipes/mockinbird/meta.yaml
index 38c8c3b411066..8c939b31b61a4 100644
--- a/recipes/mockinbird/meta.yaml
+++ b/recipes/mockinbird/meta.yaml
@@ -1,5 +1,5 @@
-{% set version="1.0.0a1" %}
-{% set sha256="d006e623f3b962b3a0d06dceab24275fa47468d8dbd690f8dfca5ff8db09b238" %}
+{% set version = "1.0.0a1" %}
+{% set sha256 = "d006e623f3b962b3a0d06dceab24275fa47468d8dbd690f8dfca5ff8db09b238" %}
 
 package:
   name: mockinbird
@@ -10,9 +10,41 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  script: python -m pip install --no-deps --ignore-installed .
-  number: 6
-  skip: True  #  [not py3k]
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation --no-cache-dir . -vvv
+  number: 7
+  entry_points:
+    - mockinbird = mockinbird.scripts.mockinbird:main
+    - mb-preprocess = mockinbird.scripts.preprocess:main
+    - mb-postprocess = mockinbird.scripts.postprocess:main
+    - mb-extract-sites = mockinbird.scripts.extract_sites:main
+    - mb-pileup2sites = mockinbird.scripts.pileup2sites:main
+    - mb-site-merger = mockinbird.scripts.site_merger_full:main
+    - mb-create-bam-statistics = mockinbird.scripts.estimate_bam_statistics:main
+    - mb-calculate-posterior = mockinbird.scripts.calculate_posterior:main
+    - mb-mockinbird2table = mockinbird.scripts.mockinbird2table:main
+    - mb-learn-mock = mockinbird.scripts.learn_model:main
+    - mb-remove-duplicates = mockinbird.scripts.removePCRduplicates:run
+    - mb-adapter-clipper = mockinbird.scripts.clipper53:main
+    - mb-bam-postprocess = mockinbird.scripts.bam_postprocessing:main
+    - mb-softclip-analyzer = mockinbird.scripts.clipped_seq:main
+    - mb-bsfinder = mockinbird.scripts.bsfinder:run
+    - mb-normalize = mockinbird.scripts.normalize:run
+    - mb-cap-occupancy = mockinbird.scripts.convert2quantile:run
+    - mb-table2fasta = mockinbird.utils.table2fasta:main
+    - mb-upgrade-table = mockinbird.utils.update_table:main
+    - mb-plot-metagene-nobs = mockinbird.plots.makeCenterBothEnds:run
+    - mb-plot-metagene = mockinbird.plots.makeCenterBothEnds_bs:main
+    - mb-plot-kmer-enrichment = mockinbird.plots.makeKmerPerPosition:run
+    - mb-generate-negative-set = mockinbird.scripts.makeNegSets:run
+    - mb-plot-kmer-logodds = mockinbird.plots.makeKmerLogOdds:run
+    - mb-xxmotif = mockinbird.scripts.xxmotif:run
+    - mb-plot-transition-frequencies = mockinbird.plots.makeNucleotideProbabilities:run
+    - mb-plot-heatmap = mockinbird.plots.makeHeatMap:run
+    - mb-plot-heatmap-small = mockinbird.plots.makeHeatMapSmall:run
+    - mb-filter-sites = mockinbird.scripts.filter_sites:main
+    - mb-annotate-table = mockinbird.scripts.annotate_table:main
+  run_exports:
+    - {{ pin_subpackage("mockinbird", max_pin="x") }}
 
 requirements:
   build:
@@ -50,10 +82,10 @@ test:
     - mockinbird.utils
 
 about:
-  home: https://github.com/soedinglab/mockinbird
-  license: GPL-3
+  home: "https://github.com/soedinglab/mockinbird"
+  license: "GPL-3.0-or-later"
   license_family: GPL3
-  license_file: LICENSE.txt
+  license_file: "LICENSE.txt"
   summary: A fully automatic and reproducible PAR-CLIP analysis pipeline
-  doc_url: http://wwwuser.gwdg.de/~compbiol/mockinbird/doc/
-  dev_url: https://github.com/soedinglab/mockinbird
+  doc_url: "http://wwwuser.gwdg.de/~compbiol/mockinbird/doc/"
+  dev_url: "https://github.com/soedinglab/mockinbird"
diff --git a/recipes/modlamp/meta.yaml b/recipes/modlamp/meta.yaml
index 895a2ac30b3b8..1d40f63b375aa 100644
--- a/recipes/modlamp/meta.yaml
+++ b/recipes/modlamp/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "modlamp" %}
-{% set version = "4.2.1" %}
+{% set version = "4.3.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,14 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: "98a7fcd0779510f8c788f4e73ab7e6e5eabd428e465606bb2178a1281a857a54"
-  patches:
-    - patch
+  sha256: "69b56d7ba5fc68d1c7de69b25e60a98864f13510dd26c1f3b5286730b702caec"
 
 build:
   noarch: python
   number: 0
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/modlamp/patch b/recipes/modlamp/patch
deleted file mode 100644
index 151b7469cf1b1..0000000000000
--- a/recipes/modlamp/patch
+++ /dev/null
@@ -1,21 +0,0 @@
---- setup.py	2020-06-12 14:08:56.000000000 +0200
-+++ setup.bak	2020-06-14 15:28:40.063679415 +0200
-@@ -6,10 +6,6 @@
- except ImportError:  # for pip <= 9.0.3
-     from pip.req import parse_requirements
- 
--# parse the requirements from the requirements file
--install_reqs = parse_requirements('requirements.txt', session='hack')
--reqs = [str(ir.req) for ir in install_reqs][:-1]
--
- with open('README.rst') as f:
-     readme = f.read()
- 
-@@ -35,6 +31,5 @@
-           'Topic :: Scientific/Engineering :: Medical Science Apps.',
-           'License :: OSI Approved :: BSD License',
-           'Programming Language :: Python :: 3',
--          'Programming Language :: Python :: 3.6'],
--      install_requires=reqs
-+          'Programming Language :: Python :: 3.6']
-       )
diff --git a/recipes/mofapy2/meta.yaml b/recipes/mofapy2/meta.yaml
new file mode 100644
index 0000000000000..0b73846286177
--- /dev/null
+++ b/recipes/mofapy2/meta.yaml
@@ -0,0 +1,41 @@
+{% set name = "mofapy2" %}
+{% set version = "0.7.1" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: 937c385e07cebcc20039cff4782b7f7d6ebb7b576c4f5a12f5e74364dcec16c3
+build:
+  noarch: python
+  number: 0
+  script: python -m pip install --no-deps --ignore-installed .
+  run_exports:
+    - {{ pin_subpackage('mofapy2', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python
+    - pip
+    - poetry-core
+  run:
+    - h5py
+    - numpy
+    - pandas
+    - python
+    - scipy
+    - scikit-learn
+    - anndata
+
+test:
+  imports:
+    - mofapy2
+
+about:
+  home: https://github.com/bioFAM/mofapy2
+  license: 'LGPL 3.0'
+  license_family: LGPL
+  license_file: LICENSE
+  summary: Multi-Omics Factor Analysis
diff --git a/recipes/mokapot/meta.yaml b/recipes/mokapot/meta.yaml
index 9e270a5c79465..3a4883235371c 100644
--- a/recipes/mokapot/meta.yaml
+++ b/recipes/mokapot/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "mokapot" %}
-{% set version = "0.9.1" %}
+{% set version = "0.10.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: b4b89e4e35f110e10ffd22498d758e61f83195a10f249cccee1092e760e82313
+  sha256: 80e483491a5b2e6a069f561e88176d5751258b89a7147f5d855e3c11461b7c0b
 
 build:
   number: 0
@@ -15,6 +15,8 @@ build:
   entry_points:
     - mokapot = mokapot.mokapot:main
   script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage('mokapot', max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/monopogen/build.sh b/recipes/monopogen/build.sh
new file mode 100644
index 0000000000000..77db429cd8ee9
--- /dev/null
+++ b/recipes/monopogen/build.sh
@@ -0,0 +1,8 @@
+#!/bin/bash -euo
+
+mkdir -p ${PREFIX}/bin
+
+${PYTHON} -m pip install . -vvv --no-deps --no-build-isolation
+
+chmod +rx ${SP_DIR}/Monopogen.py
+cp ${SP_DIR}/Monopogen.py ${PREFIX}/bin
diff --git a/recipes/monopogen/meta.yaml b/recipes/monopogen/meta.yaml
new file mode 100644
index 0000000000000..fee69ee522e3c
--- /dev/null
+++ b/recipes/monopogen/meta.yaml
@@ -0,0 +1,55 @@
+{% set name = "Monopogen" %}
+{% set version = "1.6.0" %}
+{% set sha256 = "c0783c3296aed13017d337f2d7b9c7e55d72ac7f0397e83ba0d1c14fe38cb91b" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/KChen-lab/Monopogen/archive/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage('monopogen', max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.6
+    - pip
+  run:
+    - python >=3.6
+    - pandas >=1.2.3
+    - pysam >=0.16.0.1
+    - numpy >=1.19.5
+    - scipy >=1.6.3
+    - pillow >=8.2.0
+    - openjdk
+    - samtools
+    - bcftools
+    - beagle
+    - tabix
+    - r-base
+    - r-data.table
+    - r-e1071
+    - r-ggplot2
+
+test:
+  imports:
+    - Monopogen
+
+about:
+  home: https://github.com/KChen-lab/Monopogen
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE
+  summary: "Monopogen is an analysis package for SNV calling from single-cell sequencing datasets generated from single cell RNA 10x 5', 10x 3', single ATAC-seq technoloiges, scDNA-seq, etc."
+
+extra:
+  recipe-maintainers:
+    - mencian
+  identifiers:
+    - doi:10.1038/s41587-023-01873-x
diff --git a/recipes/monsda/meta.yaml b/recipes/monsda/meta.yaml
index e274d852c03b8..d9c5823a904ab 100644
--- a/recipes/monsda/meta.yaml
+++ b/recipes/monsda/meta.yaml
@@ -1,61 +1,65 @@
 {% set name = "MONSDA" %}
-{% set version = "1.0.0" %}
-{% set sha256 = "5f9ba1ba502399734b7473f56e57a9df85e85fda0a8b615ab7858a502d827e9a" %}
+{% set version = "1.2.6" %}
+{% set sha256 = "048ea5477348913f8209c5f590341a11abbc1dd18b7a6121df2eaee63922c81d" %}
 
 package:
   name: "{{ name|lower }}"
   version: "{{ version }}"
 
 source:
-  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name|lower }}-{{ version }}.tar.gz
   sha256: "{{ sha256 }}"
 
 build:
   number: 0
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv"
+  script: "{{ PYTHON }} -m pip install . --use-pep517 --no-deps --ignore-installed -vvv"
   entry_points:
     - monsda = MONSDA.RunMONSDA:main
     - monsda_configure = MONSDA.Configurator:main
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('monsda', max_pin="x") }}
 
 requirements:
   host:
-    - python >=3.9
+    - python >=3.12
     - pip
-    - setuptools
     - pytest-runner
+    - versioneer >=0.20
   run:
-    - biopython>=1.79
-    - grep>=3.4
-    - libmamba>=0.21.2
-    - mamba>=0.17.0
-    - more-itertools>=8.8.0
-    - natsort>=7.1.1
-    - nextflow
-    - numpy>=1.21.0
-    - pandas>=1.4.1
-    - perl>=5.32.1
-    - python>=3.9
-    - scipy>=1.7.0
-    - snakemake-minimal>=6.5.3
-    - snakemake>=6.5.3
-    - versioneer>=0.20
-    - yaml>=0.2.5
-    - zlib>=1.2.11
-    - zstd>=1.5.0
-    
+    - python >=3.12
+    - biopython >=1.83
+    - black >=21.5b2
+    - flake8 >=3.8.3
+    - natsort >=8.4.0
+    - nextflow >=23.10.1
+    - numpy >=1.26.4
+    - pandas >=2.2.1
+    - perl >=5.32.0
+    - pyyaml >=6.0.1
+    - scipy >=1.12.0
+    - snakemake >=8.11.3
+    - snakemake-executor-plugin-slurm =0.5.0
+    - snakemake-executor-plugin-cluster-generic =1.0.9
+    - snakemake-interface-common =1.17.2
+    - snakemake-interface-executor-plugins =9.1.1
+    - snakemake-interface-report-plugins =1.0.0
+    - snakemake-interface-storage-plugins =3.2.2
+    - snakemake-storage-plugin-s3 =0.2.11
+    - versioneer >=0.20
+
 test:
   commands:
     - monsda --version 2>&1 |grep {{ version }}
     - monsda_configure -h|grep help
     - rm -rf LOGS
-    
+
 about:
   home: https://github.com/jfallmann/MONSDA
-  license: GPL3
-  license_family: GPL
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
-  summary: MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis
+  summary: MONSDA, Modular Organizer of Nextflow and Snakemake driven HTS Data Analysis
   doc_url: https://monsda.readthedocs.io/en/latest/
 
 extra:
diff --git a/recipes/moods/build.sh b/recipes/moods/build.sh
index 9fd7ba71a6699..689926c02722e 100644
--- a/recipes/moods/build.sh
+++ b/recipes/moods/build.sh
@@ -1,17 +1,17 @@
 #!/bin/bash
-cat >setup_compile.patch << EOF
---- setup.py    2018-07-18 09:44:45.000000000 -0700
-+++ new_setup.py    2018-07-18 09:46:32.000000000 -0700
-@@ -7,7 +7,7 @@
- from distutils.core import setup, Extension
- 
+cat > setup.py.patch << EOF
+--- a/setup.py
++++ b/setup.py
+@@ -4,7 +4,7 @@ from setuptools import setup, Extension
+ from os import path
+
  common_includes = ["core/"]
--common_compile_args = ['-march=native', '-O3', '-fPIC', '--std=c++11']
+-common_compile_args = ['-O3', '-fPIC', '--std=c++11']
 +common_compile_args = ['-mtune=generic', '-O3', '-fPIC', '--std=c++11']
- 
- 
+
  tools_mod = Extension('MOODS._tools',
+                            sources=['core/tools_wrap.cxx',
 EOF
-patch setup.py setup_compile.patch
-rm setup_compile.patch
-$PYTHON setup.py install --record=record.txt
+patch setup.py setup.py.patch
+rm setup.py.patch
+${PYTHON} -m pip install . -vvv --no-deps --no-build-isolation
diff --git a/recipes/moods/build_failure.osx-64.yaml b/recipes/moods/build_failure.osx-64.yaml
deleted file mode 100644
index df0004b00581b..0000000000000
--- a/recipes/moods/build_failure.osx-64.yaml
+++ /dev/null
@@ -1,104 +0,0 @@
-recipe_sha: 85b12909a78e1bdae24bdf224f6202087b7343518d4e71f8e94bbb76b3837ca1  # The commit at which this recipe failed to build.
-skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
-log: |2-
-      libcxx:             16.0.4-hd57cbcb_0         conda-forge
-      libiconv:           1.17-hac89ed1_0           conda-forge
-      libllvm15:          15.0.7-he4b1e75_2         conda-forge
-      libxml2:            2.11.4-hd95e348_0         conda-forge
-      libzlib:            1.2.13-hfd90126_4         conda-forge
-      llvm-tools:         15.0.7-he4b1e75_2         conda-forge
-      openssl:            3.1.0-h8a1eda9_3          conda-forge
-      sigtool:            0.1.3-h88f4db0_0          conda-forge
-      tapi:               1100.0.11-h9ce4665_0      conda-forge
-      xz:                 5.2.6-h775f41a_0          conda-forge
-      zstd:               1.5.2-hbc0c0cd_6          conda-forge
-
-  Preparing transaction: ...working... done
-  Verifying transaction: ...working... done
-  Executing transaction: ...working... done
-  Source cache directory is: /opt/mambaforge/envs/bioconda/conda-bld/src_cache
-  INFO:conda_build.source:Source cache directory is: /opt/mambaforge/envs/bioconda/conda-bld/src_cache
-  Downloading source to cache: MOODS-python-1.9.4.1_7fd4d634bc.tar.gz
-  Downloading https://github.com/jhkorhonen/MOODS/releases/download/v1.9.4.1/MOODS-python-1.9.4.1.tar.gz
-  INFO:conda_build.source:Downloading source to cache: MOODS-python-1.9.4.1_7fd4d634bc.tar.gz
-  INFO:conda_build.source:Downloading https://github.com/jhkorhonen/MOODS/releases/download/v1.9.4.1/MOODS-python-1.9.4.1.tar.gz
-  Success
-  INFO:conda_build.source:Success
-  Extracting download
-  source tree in: /opt/mambaforge/envs/bioconda/conda-bld/moods_1685353906262/work
-  export PREFIX=/opt/mambaforge/envs/bioconda/conda-bld/moods_1685353906262/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol
-  export BUILD_PREFIX=/opt/mambaforge/envs/bioconda/conda-bld/moods_1685353906262/_build_env
-  export SRC_DIR=/opt/mambaforge/envs/bioconda/conda-bld/moods_1685353906262/work
-  INFO: activate_clang_osx-64.sh made the following environmental changes:
-  AR=x86_64-apple-darwin13.4.0-ar
-  AS=x86_64-apple-darwin13.4.0-as
-  CC=x86_64-apple-darwin13.4.0-clang
-  CC_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang
-  CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/moods-1.9.4.1 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
-  CHECKSYMS=x86_64-apple-darwin13.4.0-checksyms
-  CLANG=x86_64-apple-darwin13.4.0-clang
-  CMAKE_ARGS=-DCMAKE_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_CXX_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_C_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_CXX_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_C_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_LINKER=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ld -DCMAKE_STRIP=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-strip -DCMAKE_INSTALL_NAME_TOOL=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-install_name_tool -DCMAKE_LIBTOOL=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-libtool -DCMAKE_OSX_DEPLOYMENT_TARGET=10.9 -DCMAKE_BUILD_TYPE=Release -DCMAKE_OSX_SYSROOT=/Applications/Xcode_14.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_FIND_APPBUNDLE=LAST -DCMAKE_INSTALL_PREFIX=$PREFIX -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_PROGRAM_PATH=$BUILD_PREFIX/bin;$PREFIX/bin
-  CMAKE_PREFIX_PATH=:$PREFIX
-  CONDA_TOOLCHAIN_BUILD=x86_64-apple-darwin13.4.0
-  CONDA_TOOLCHAIN_HOST=x86_64-apple-darwin13.4.0
-  CPPFLAGS=-D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.9
-  DEBUG_CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -Og -g -Wall -Wextra -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/moods-1.9.4.1 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
-  HOST=x86_64-apple-darwin13.4.0
-  INSTALL_NAME_TOOL=x86_64-apple-darwin13.4.0-install_name_tool
-  LD=x86_64-apple-darwin13.4.0-ld
-  LDFLAGS=-Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,$PREFIX/lib -L$PREFIX/lib
-  LDFLAGS_LD=-pie -headerpad_max_install_names -dead_strip_dylibs -rpath $PREFIX/lib -L$PREFIX/lib
-  LIBTOOL=x86_64-apple-darwin13.4.0-libtool
-  LIPO=x86_64-apple-darwin13.4.0-lipo
-  MESON_ARGS=--buildtype release --prefix=$PREFIX -Dlibdir=lib
-  NM=x86_64-apple-darwin13.4.0-nm
-  NMEDIT=x86_64-apple-darwin13.4.0-nmedit
-  OBJC=x86_64-apple-darwin13.4.0-clang
-  OBJC_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang
-  OTOOL=x86_64-apple-darwin13.4.0-otool
-  PAGESTUFF=x86_64-apple-darwin13.4.0-pagestuff
-  RANLIB=x86_64-apple-darwin13.4.0-ranlib
-  REDO_PREBINDING=x86_64-apple-darwin13.4.0-redo_prebinding
-  SDKROOT=/Applications/Xcode_14.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk
-  SEGEDIT=x86_64-apple-darwin13.4.0-segedit
-  SEG_ADDR_TABLE=x86_64-apple-darwin13.4.0-seg_addr_table
-  SEG_HACK=x86_64-apple-darwin13.4.0-seg_hack
-  SIZE=x86_64-apple-darwin13.4.0-size
-  STRINGS=x86_64-apple-darwin13.4.0-strings
-  STRIP=x86_64-apple-darwin13.4.0-strip
-  _CONDA_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_apple_darwin13_4_0
-  ac_cv_func_malloc_0_nonnull=yes
-  ac_cv_func_realloc_0_nonnull=yes
-  build_alias=x86_64-apple-darwin13.4.0
-  host_alias=x86_64-apple-darwin13.4.0
-  INFO: activate_clangxx_osx-64.sh made the following environmental changes:
-  CLANGXX=x86_64-apple-darwin13.4.0-clang
-  CXX=x86_64-apple-darwin13.4.0-clang
-  CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc -fvisibility-inlines-hidden -fmessage-length=0 -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/moods-1.9.4.1 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
-  CXX_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang
-  DEBUG_CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc -fvisibility-inlines-hidden -fmessage-length=0 -Og -g -Wall -Wextra -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/moods-1.9.4.1 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
-  patching file setup.py
-  Hunk #1 succeeded at 8 with fuzz 2 (offset 1 line).
-  Traceback (most recent call last):
-    File "setup.py", line 7, in <module>
-      from setuptools import setup, Extension
-  ModuleNotFoundError: No module named 'setuptools'
-  Traceback (most recent call last):
-    File "/opt/mambaforge/envs/bioconda/bin/conda-mambabuild", line 10, in <module>
-      sys.exit(main())
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
-      call_conda_build(action, config)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
-      result = api.build(
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
-      return build_tree(
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
-      packages_from_this = build(metadata, stats,
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
-      utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
-      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
-      raise subprocess.CalledProcessError(proc.returncode, _args)
-  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/mambaforge/envs/bioconda/conda-bld/moods_1685353906262/work/conda_build.sh']' returned non-zero exit status 1.
-# Last 100 lines of the build log.
diff --git a/recipes/moods/meta.yaml b/recipes/moods/meta.yaml
index d516f94e805d6..01727f6f25eda 100644
--- a/recipes/moods/meta.yaml
+++ b/recipes/moods/meta.yaml
@@ -1,38 +1,40 @@
-{% set version = "1.9.4.1" %}
+{% set name = "moods" %}
+{% set version = "1.9.4.2" %}
 
 package:
-  name: moods
+  name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://github.com/jhkorhonen/MOODS/releases/download/v{{ version }}/MOODS-python-{{ version }}.tar.gz
-  sha256: 7fd4d634bc2258421859d720afb9e38b4015b92d1ffc7aaeeb5422ce8b26d65e
+  url: https://pypi.io/packages/source/{{ name[0] }}/mira-moods/mira-moods-{{ version }}.tar.gz
+  sha256: e694e37c7487286801bffcda3e0576157960007919dd5ceb8b5a1626dc2968e1
 
 build:
-  number: 4
+  number: 0
+  skip: True  # [py < 36]
+  run_exports:
+    - {{ pin_subpackage('moods', max_pin="x") }}
 
 requirements:
   build:
-    - {{ compiler('c') }}
     - {{ compiler('cxx') }}
   host:
     - python
-    - swig # [py3k]
-
+    - pip
   run:
     - python
-    - swig # [py3k]
 
 test:
   imports:
     - MOODS.scan
 
 about:
-  home: https://github.com/jhkorhonen/MOODS
-  license: GPLv3
-  license_family: GPL
+  home: https://www.cs.helsinki.fi/group/pssmfind/
+  summary: 'MOODS: Motif Occurrence Detection Suite'
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: COPYING.GPLv3
-  summary: MOODS, Motif Occurrence Detection Suite
+  dev_url: https://github.com/jhkorhonen/MOODS
 
 extra:
   identifiers:
diff --git a/recipes/morpheus/meta.yaml b/recipes/morpheus/meta.yaml
index 258c57cd1367e..f4230238a4989 100644
--- a/recipes/morpheus/meta.yaml
+++ b/recipes/morpheus/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "287" %}
-{% set sha256 = "26757d63e44f8cd3888145edd4ddd7376e1502599672df768f3a448cbee88b5d" %}
+{% set version = "288" %}
+{% set sha256 = "05f2f502e591d349006eabd23f4c6a3933608d8ad1a2cfa898a46afd3245268a" %}
 
 package:
   name: morpheus
@@ -10,9 +10,11 @@ source:
   sha256: '{{ sha256 }}'
 
 build:
-  number: 1
-  skip: true    # [osx]
+  number: 0
+  skip: True  # [osx]
   script: mkdir -p $PREFIX/bin && cp * $PREFIX/bin && cd $PREFIX/bin && ln -s ./morpheus_mzml_mono_cl.exe ./morpheus && chmod +x $PREFIX/bin/morpheus*
+  run_exports:
+    - {{ pin_subpackage('morpheus', max_pin=None) }}
 
 requirements:
   run:
@@ -28,9 +30,12 @@ about:
   license_family: MIT
   license_file: MIT_License.CommandLine.txt
   summary: mass spectrometry–based proteomics database search algorithm
-  
+  doc_url: https://cwenger.github.io/Morpheus/
+  dev_url: https://github.com/cwenger/Morpheus/
+
 extra:
   identifiers:
     - doi:10.1021/pr301024c
+    - biotools:morpheus
   skip-lints:
     - should_be_noarch_generic
diff --git a/recipes/mosca/build.sh b/recipes/mosca/build.sh
deleted file mode 100644
index 09ffed14a0a72..0000000000000
--- a/recipes/mosca/build.sh
+++ /dev/null
@@ -1,5 +0,0 @@
-echo "Storing MOSCA's files in the Conda environment at: ${PREFIX}"
-mkdir -p "${PREFIX}/share/MOSCA" "${PREFIX}/bin"
-cp -r workflow/* "${PREFIX}/share/MOSCA"
-chmod +x "${PREFIX}/share/MOSCA/mosca.py"
-ln -s "${PREFIX}/share/MOSCA/mosca.py" "${PREFIX}/bin/mosca"
\ No newline at end of file
diff --git a/recipes/mosca/meta.yaml b/recipes/mosca/meta.yaml
index 11788ab31187e..d5f6fa74f4ac4 100644
--- a/recipes/mosca/meta.yaml
+++ b/recipes/mosca/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "mosca" %}
-{% set version = "2.1.0" %}
-{% set sha256 = "823bffe56b298505136d7cbad3ab0cca526736edeba4458bc3dbb0b4450ab132" %}
+{% set version = "2.3.0" %}
+{% set sha256 = "1eba9c082273dd46badd2d5ff8df56aabdc496214e337331d000f54399893a94" %}
 
 package:
   name: {{ name|lower }}
@@ -13,11 +13,19 @@ source:
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage("mosca", max_pin="x.x") }}
+  script: >
+    mkdir -p $PREFIX/share/MOSCA $PREFIX/bin && 
+    cp -r workflow/* resources/*.json resources/*.txt $PREFIX/share/MOSCA && 
+    chmod +x $PREFIX/share/MOSCA/mosca.py && 
+    ln -s $PREFIX/share/MOSCA/mosca.py $PREFIX/bin/mosca
 
 requirements:
   run:
-    - python >=3.9
-    - snakemake
+    - python >=3.9, <3.12
+    - pandas
+    - snakemake <8
 
 test:
   commands:
@@ -25,7 +33,7 @@ test:
 
 about:
   home: https://github.com/iquasere/MOSCA
-  license: GNU General Public License v3 (GPL-3.0)
+  license: GPL-3.0-or-later
   license_family: GPL
   license_file: LICENSE
   summary: 'MOSCA - Meta-Omics Software for Community Analysis'
@@ -47,4 +55,4 @@ about:
 
 extra:
   recipe-maintainers:
-    - iquasere
\ No newline at end of file
+    - iquasere
diff --git a/recipes/mosdepth/build.sh b/recipes/mosdepth/build.sh
index dcbb0237c2f55..8d17d6407e85d 100755
--- a/recipes/mosdepth/build.sh
+++ b/recipes/mosdepth/build.sh
@@ -1,10 +1,16 @@
 #!/bin/sh
 
 if [[ ${target_platform}  == osx-64 ]] ; then
+    curl -SL https://github.com/nim-lang/nightlies/releases/download/latest-version-1-6/macosx_x64.tar.xz -o macosx_x64.tar.xz
+    tar -xzf macosx_x64.tar.xz
+    cd nim-1.6.*
+    export PATH="$PWD/bin:$PATH"
+    cd ..
     curl -SL https://github.com/brentp/mosdepth/archive/refs/tags/v${PKG_VERSION}.tar.gz -o mosdepth-latest.tar.gz
     tar -xzf mosdepth-latest.tar.gz
     cd mosdepth-${PKG_VERSION}
-    nimble --localdeps build -y --verbose -d:release
+    nimble install -y "docopt@0.7.0"
+    nimble build -y --verbose -d:release
 else
     curl -SL https://github.com/brentp/mosdepth/releases/download/v$PKG_VERSION/mosdepth -o mosdepth
     chmod +x mosdepth
diff --git a/recipes/mosdepth/meta.yaml b/recipes/mosdepth/meta.yaml
index 5716f24daaff5..a1a2bd00817be 100755
--- a/recipes/mosdepth/meta.yaml
+++ b/recipes/mosdepth/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.3.4" %}
+{% set version = "0.3.8" %}
 
 package:
   name: mosdepth
@@ -6,14 +6,15 @@ package:
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage("mosdepth", max_pin="x.x") }}
 
 requirements:
   build:
     - {{ compiler('c') }}
     - curl
-    - nim
   host:
-    - htslib >=1.10
+    - htslib >=1.19.1
   run:
 
 test:
@@ -25,7 +26,7 @@ about:
   dev_url: https://github.com/brentp/mosdepth
   doc_url: https://github.com/brentp/mosdepth
   license: MIT
-  summary: 'Fast BAM/CRAM depth calculation for WGS, exome, or targetted sequencing.'
+  summary: 'Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing.'
 
 extra:
   identifiers:
diff --git a/recipes/ms-entropy/meta.yaml b/recipes/ms-entropy/meta.yaml
new file mode 100644
index 0000000000000..498535e480579
--- /dev/null
+++ b/recipes/ms-entropy/meta.yaml
@@ -0,0 +1,48 @@
+{% set name = "ms-entropy" %}
+{% set version = "1.2.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/ms_entropy-{{ version }}.tar.gz
+  sha256: 428b43006b75824d80bd494dea0f80fa2e3c3366b7b31d556055ea6500a568cd
+
+build:
+  skip: true  # [py<37]
+  script: {{ PYTHON }} -m pip install . -vv
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('ms-entropy', max_pin='x.x') }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+  host:
+    - python
+    - setuptools >=61.0
+    - cython >=0.26.1
+    - numpy >=1.9.3
+    - pip
+  run:
+    - python
+    - {{ pin_compatible('numpy') }}
+
+test:
+  imports:
+    - ms_entropy
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/YuanyueLi/MSEntropy
+  summary: This package provides a Python implementation of calculating spectral entropy, entropy similarity, and Flash entropy search for mass spectrometry data.
+  license: Apache-2.0
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - hechth
diff --git a/recipes/ms2deepscore/meta.yaml b/recipes/ms2deepscore/meta.yaml
index 9c05798e4fe0c..6389bdadf0716 100644
--- a/recipes/ms2deepscore/meta.yaml
+++ b/recipes/ms2deepscore/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "ms2deepscore" %}
-{% set version = "0.4.0" %}
-{% set sha256 = "d0426857ab4caab4878343617a9e6842ace03c4446fe0a249d4617b3ede2637f" %}
+{% set version = "2.0.0" %}
+{% set sha256 = "50b700319a07461a0ac2be0a6f67c1cf1b23a681cb76b8c4488d948f8976f5b2" %}
 
 package:
   name: {{ name|lower }}
@@ -13,19 +13,24 @@ source:
 build:
   number: 0
   noarch: python
-  script: {{ PYTHON }} -m pip install .
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
+  run_exports:
+    - {{ pin_subpackage('ms2deepscore', max_pin="x") }}
 
 requirements:
   host:
-    - python >=3.8
+    - python >=3.9
+    - pip
   run:
-    - python >=3.8
-    - matchms >=0.14
+    - python >=3.9
+    - matchms >=0.18.0
+    - matplotlib-base ==3.7.2
     - numba
     - numpy >=1.20.3
     - pandas
+    - pytorch
+    - scikit-learn
     - tqdm
-    - tensorflow
 
 test:
   imports:
@@ -34,15 +39,19 @@ test:
 about:
   home: https://github.com/matchms/ms2deepscore
   license: Apache-2.0
+  license_family: APACHE
   license_file: LICENSE
+  dev_url: https://github.com/matchms/ms2deepscore
   summary: "Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity"
   description: |
     ms2deepscore provides a Siamese neural network that is trained to predict
     molecular structural similarities (Tanimoto scores) from pairs of mass
     spectrometry spectra.
+
 extra:
   identifiers:
-    - doi:https://doi.org/10.1186/s13321-021-00558-4
+    - doi:10.1186/s13321-021-00558-4
+    - biotools:ms2deepscore
   recipe-maintainers:
     - niekdejonge
     - hechth
diff --git a/recipes/ms2pip/meta.yaml b/recipes/ms2pip/meta.yaml
index b3378d4e50f80..910e321977e0d 100644
--- a/recipes/ms2pip/meta.yaml
+++ b/recipes/ms2pip/meta.yaml
@@ -1,5 +1,6 @@
-{% set version = "3.11.0" %}
-{% set sha256 = "38feec7962a6b56d15f310df0dbfe7bbb3c88ab8beb4f183e8048e7e2cefa7dd" %}
+{% set version = "4.0.0.dev8" %}
+{% set name = "ms2pip" %}
+{% set sha256 = "2a464e00135c875c12c98f6853a4487e193a0730b5bd94f82a44e8d5fb21a7bb" %}
 
 package:
   name: "ms2pip"
@@ -10,8 +11,10 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 2
+  number: 0
   skip: True  # [py < 37]
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
   entry_points:
     - ms2pip=ms2pip.__main__:main
     - fasta2speclib=fasta2speclib.fasta2speclib:main
@@ -27,10 +30,10 @@ requirements:
     - cython >=0.29.2,<1
     - numpy
     - pip
-    - python
+    - python >=3.8
+    - spectrum_utils >=0.4 # [linux]
   run:
-    - python
-    - biopython >=1.74
+    - python >=3.8
     - {{ pin_compatible('numpy') }}
     - pandas >=1.0
     - pyteomics >=3.5
@@ -40,10 +43,13 @@ requirements:
     - click >=7
     - xgboost >=1.3
     - matplotlib-base >=3.0
-    - spectrum_utils >=0.3.5
     - lxml >=4
     - rich >=13
-    - pydantic >=1.10
+    - pydantic >=1.10,<2
+    - psm-utils
+    - werkzeug >=2
+    - pyarrow
+    - pyopenms
 
 test:
   imports:
diff --git a/recipes/ms2query/meta.yaml b/recipes/ms2query/meta.yaml
index da5063300557d..9c03dfc03553a 100644
--- a/recipes/ms2query/meta.yaml
+++ b/recipes/ms2query/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "ms2query" %}
-{% set version = "1.2.1" %}
-{% set sha256 = "bf638379a4eb1a6185caf9343774fae2a34bd938a47c4560f4e3095e68a0933c" %}
+{% set version = "1.2.3" %}
+{% set sha256 = "2111d9bb6d6b35144128f396d6141ec151b4f4d14a262de0516e3673bfd9a9f1" %}
 
 package:
   name: {{ name|lower }}
@@ -13,13 +13,17 @@ source:
 build:
   number: 0
   noarch: python
-  script: {{ PYTHON }} -m pip install .
+  entry_points:
+    - ms2query=ms2query:command_line
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  run_exports:
+    - {{ pin_subpackage('ms2query', max_pin="x") }}
 
 requirements:
   host:
-    - python =3.8
+    - python >=3.7
   run:
-    - python =3.8
+    - python >=3.7
     - matchms >=0.14.0,<=0.17.0
     - spec2vec >=0.6.0
     - h5py >=3.8.0
@@ -45,6 +49,7 @@ about:
   license: Apache-2.0
   license_file: LICENSE
   summary: "Reliable and fast MS/MS spectral-based analogue search"
+
 extra:
   identifiers:
     - doi:https://doi.org/10.1038/s41467-023-37446-4
diff --git a/recipes/ms2rescore-rs/build.sh b/recipes/ms2rescore-rs/build.sh
new file mode 100644
index 0000000000000..89752b0073526
--- /dev/null
+++ b/recipes/ms2rescore-rs/build.sh
@@ -0,0 +1,21 @@
+#!/bin/bash
+
+# -e = exit on first error
+# -x = print every executed command
+set -ex
+
+# Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
+# We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
+export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="${BUILD_PREFIX}/.cargo"
+
+# Use a custom temporary directory as home on macOS.
+# (not sure why this is useful, but people use it in bioconda recipes)
+if [ `uname` == Darwin ]; then
+  export HOME=`mktemp -d`
+fi
+
+# Build the package using maturin - should produce *.whl files.
+maturin build --interpreter $PYTHON --release
+
+# Install *.whl files using pip
+$PYTHON -m pip install target/wheels/*.whl --no-deps --ignore-installed -vv
diff --git a/recipes/ms2rescore-rs/meta.yaml b/recipes/ms2rescore-rs/meta.yaml
new file mode 100644
index 0000000000000..bcdfc966cdbb1
--- /dev/null
+++ b/recipes/ms2rescore-rs/meta.yaml
@@ -0,0 +1,50 @@
+{% set name = "ms2rescore-rs" %}
+{% set version = "0.2.0" %}
+{% set sha256 = "561ed92f58fd7ecccc78b3e4b1bc91ffa36d0f2e58d54f7ea317898f3ea55560" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/ms2rescore_rs-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  skip: True  # [py < 37]
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x.x") }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('rust') }}
+    - make
+    - cmake
+  host:
+    - zlib
+    - python
+    - maturin >=1.5,<2.0
+    - pip
+  run:
+    - python
+
+test:
+  imports:
+    - ms2rescore_rs
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/compomics/ms2rescore-rs
+  summary: "Rust functionality for the MS²Rescore package"
+  license: Apache-2.0
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - CompOmics
+    - RalfG
diff --git a/recipes/ms2rescore/meta.yaml b/recipes/ms2rescore/meta.yaml
new file mode 100644
index 0000000000000..47c1ca6c892a4
--- /dev/null
+++ b/recipes/ms2rescore/meta.yaml
@@ -0,0 +1,78 @@
+{% set name = "ms2rescore" %}
+{% set version = "3.0.3" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/ms2rescore-{{ version }}.tar.gz
+  sha256: d2ecbe0dd3c23ce598265b265c83c84e515f50fef849c0deac3963c49ba93c77
+
+build:
+  number: 0
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+  entry_points:
+    - ms2rescore = ms2rescore.__main__:main
+    - ms2rescore-gui = ms2rescore.gui.__main__:main
+    - ms2rescore-report = ms2rescore.report.__main__:main
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+
+requirements:
+  host:
+    - python >=3.8
+    - flit-core
+    - pip
+  run:
+    - python >=3.8
+    - numpy >=1.16.0
+    - pandas >=1.0
+    - rich >=12
+    - pyteomics >=4.1.0,<=4.6.3
+    - pyopenms
+    - lxml >=4.5
+    - ms2pip >=4.0.0-dev8
+    - ms2rescore-rs
+    - click >=7
+    - cascade-config >=0.4.0
+    - deeplc >=2.2
+    - deeplcretrainer >=0.2
+    - tomli >=2  # [py<311]
+    - psm-utils >=0.4
+    - customtkinter >=5,<6
+    - mokapot >=0.9
+    - pydantic >=1.8.2,<2
+    - jinja2 >=3
+    - plotly >=5
+    - sqlalchemy <2,>=1.3
+    - mokapot
+    - statsmodels
+    - matplotlib-base
+    - seaborn
+    - xgboost <2,>=1.3  # from ms2pip
+
+test:
+  imports:
+    - ms2rescore
+  commands:
+    - ms2rescore --help
+#    - ms2rescore-gui --help
+    - ms2rescore-report --help
+
+about:
+  home: https://compomics.github.io/projects/ms2rescore/
+  summary: 'MS²Rescore: Sensitive PSM rescoring with predicted MS² peak intensities and retention times.'
+  dev_url: https://github.com/compomics/ms2rescore
+  license: Apache-2.0
+  license_family: APACHE
+  license_file: LICENSE
+  doc_url: https://ms2rescore.readthedocs.io/en/stable/
+
+extra:
+  container:
+    # Click requires the extended container
+    extended-base: true
+  recipe-maintainers:
+    - compomics
diff --git a/recipes/msfragger/academic_install.py b/recipes/msfragger/academic_install.py
new file mode 100755
index 0000000000000..2f47dc5e87cfa
--- /dev/null
+++ b/recipes/msfragger/academic_install.py
@@ -0,0 +1,74 @@
+#!/usr/bin/env python3
+
+# Automates accepting the academic license agreements in order to download MSFragger. A user of this package is then expected to accept the terms themselves when they download a license key from the MSFragger site, which is enforced by the wrapper script and MSFragger jar file.
+
+import argparse
+import hashlib
+import os
+import re
+import sys
+import urllib.request
+import urllib.parse
+
+MSFRAGGER_URL = 'http://msfragger-upgrader.nesvilab.org/upgrader/upgrade_download.php'
+DOWNLOAD_READ_SIZE = 1000000
+
+def download_url(url, post_dict, dest):
+    data = urllib.parse.urlencode(post_dict).encode('ascii')
+    with open(dest, 'wb') as wh:
+        size = 0
+        m = hashlib.sha256()
+        with urllib.request.urlopen(url, data) as f:
+            while True:
+                seg = f.read(DOWNLOAD_READ_SIZE)
+                m.update(seg)
+                bytes_read = len(seg)
+                if bytes_read < 1:
+                    break
+                size += bytes_read
+                wh.write(seg)
+
+        return m.hexdigest()
+
+def parse_version(version_string):
+    version_pattern = '([\\d.]+)'
+    m = re.search(version_pattern, version_string.strip())
+    if m:
+        return m.groups()[0]
+    return None
+
+parser = argparse.ArgumentParser(
+    description="Download MSFragger zip file."
+)
+parser.add_argument(
+    '-n', '--name', help='user name'
+)
+parser.add_argument(
+    '-e', '--email', help='email'
+)
+parser.add_argument(
+    '-o', '--organization', help='institutional organization'
+)
+parser.add_argument(
+    '-m', '--msfragger_version', help='MSFragger version', required=True
+)
+parser.add_argument(
+    '-p', '--path', default='.', help='path in which to install'
+)
+parser.add_argument(
+    '--hash', default='.', help='SHA256 hash of downloaded zip'
+)
+
+args = parser.parse_args()
+fgr_ver = parse_version(args.msfragger_version)
+if fgr_ver is None:
+    print(f'Could not find version: {args.msfragger_version}', file=sys.stderr)
+    sys.exit(1)
+
+fgr_zip = 'Release ' + fgr_ver + '$zip'
+dest = os.path.join(args.path, 'MSFragger-' + fgr_ver + '.zip')
+data = {'transfer': 'academic', 'agreement1': 'true', 'agreement2': 'true','agreement3': 'true', 'name': args.name, 'email' : args.email, 'organization' : args.organization, 'download': fgr_zip}
+
+if download_url(MSFRAGGER_URL, data, dest) != args.hash:
+    print('Invalid hash calculated.', file=sys.stderr)
+    sys.exit(1)
diff --git a/recipes/msfragger/build.sh b/recipes/msfragger/build.sh
new file mode 100644
index 0000000000000..c2f43d60481cf
--- /dev/null
+++ b/recipes/msfragger/build.sh
@@ -0,0 +1,34 @@
+#!/bin/bash
+
+# These values are submitted to the MSFragger site when downloading the application zip.
+if [[ -z "$NAME" ]]; then
+    NAME="${USERNAME:-bioconda}";
+fi
+if [[ -z "$EMAIL" ]]; then
+    EMAIL="${NAME}@${HOSTNAME:-bioconda.org}";
+fi
+if [[ -z "$INSTITUTION" ]]; then
+    INSTITUTION="${HOSTNAME:-bioconda.org}";
+fi
+
+# Create directories
+TARGET="$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM"
+mkdir -p "$TARGET"
+
+# Add wrapper python script and link to unprefixed name.
+cp "$RECIPE_DIR/msfragger.py" "$TARGET"
+ln -s "$TARGET/msfragger.py" "$PREFIX/bin/msfragger"
+chmod 0755 "${PREFIX}/bin/msfragger"
+
+# This script automates accepting the academic license agreements in order to download MSFragger and build the package. A user of this package is then expected to accept the terms themselves when they download a license key from the MSFragger site, which is enforced by the wrapper script and MSFragger jar file.
+"${RECIPE_DIR}/academic_install.py" -n galaxy -e "$EMAIL" -o "$INSTITUTION" -m "$PKG_VERSION" -p "$TARGET" --hash "$SHA256SUM"
+if [[ $? -ne 0 ]]; then
+    echo "Problem downloading jar file." > /dev/stderr
+    exit 1;
+fi
+
+# Unzip and link jar.
+cd "$TARGET"
+unzip "MSFragger-$PKG_VERSION.zip"
+ln -s "MSFragger-$PKG_VERSION/MSFragger-$PKG_VERSION.jar" "MSFragger.jar"
+rm "MSFragger-$PKG_VERSION.zip"
diff --git a/recipes/msfragger/meta.yaml b/recipes/msfragger/meta.yaml
new file mode 100644
index 0000000000000..5826d1d418714
--- /dev/null
+++ b/recipes/msfragger/meta.yaml
@@ -0,0 +1,54 @@
+{% set version = "4.0" %}
+
+# This key was generated ONLY for the testing of this bioconda package.
+# Users must generate their own key by agreeing to the terms at https://msfragger.arsci.com/upgrader/MSFragger-LICENSE.pdf.
+{% set academic_use_only_key = "f28c4be2-759b0a11-6c1ea652-1240565a" %}
+{% set sha256sum = "25bdab705c4ac97729d1da8d7a075e3920d8a447596fa52eff8e564606d1720e" %}
+
+package:
+  name: msfragger
+  version: {{ version }}
+
+build:
+  number: 1
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage('msfragger', max_pin="x.x") }}
+  script_env:
+    - SHA256SUM={{ sha256sum }}
+
+requirements:
+  host:
+    - python >3.9
+    - unzip
+  run:
+    - openjdk >=11
+    - python >=3.9
+    - mono >=5, <6
+    - zlib >=1.2.13
+
+test:
+  commands:
+    - msfragger --key {{ academic_use_only_key }} -Xms512m -Xmx1g --help | grep 'License key verified'
+
+about:
+  home: https://github.com/Nesvilab/MSFragger
+  license: Academic License (https://msfragger.arsci.com/upgrader/MSFragger-LICENSE.pdf)
+  summary: Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
+  description: |
+    MSFragger is an ultrafast database search tool for peptide identification in mass spectrometry-based proteomics.
+    It has demonstrated excellent performance across a wide range of datasets and applications.
+    MSFragger is suitable for standard shotgun proteomics analyses as well as large datasets (including timsTOF PASEF data),
+    enzyme unconstrained searches (e.g., peptidome),
+    open database searches (e.g., precursor mass tolerance set to hundreds of Daltons) for identification
+    of modified peptides, and glycopeptide identification (N-linked and O-linked).
+
+    MSFragger is available freely for academic research and educational purposes only, in accordance with the terms at https://msfragger.arsci.com/upgrader/MSFragger-LICENSE.pdf.
+
+extra:
+  notes: |
+    The "msfragger" command runs the MSFragger java program.
+  identifiers:
+    - doi:10.1038/nmeth.4256
+    - doi:10.1038/s41467-020-17921-y
+    - doi:10.1038/s41592-020-0967-9
diff --git a/recipes/msfragger/msfragger.py b/recipes/msfragger/msfragger.py
new file mode 100755
index 0000000000000..6484597f30a7e
--- /dev/null
+++ b/recipes/msfragger/msfragger.py
@@ -0,0 +1,86 @@
+#!/usr/bin/env python
+#
+# Wrapper script for Java Conda packages that ensures that the java runtime
+# is invoked with the right options. Adapted from the bash script (http://stackoverflow.com/questions/59895/can-a-bash-script-tell-what-directory-its-stored-in/246128#246128).
+#
+
+import os
+import sys
+import subprocess
+from os import access, getenv, X_OK
+
+jar_file = os.path.join(os.path.dirname(os.path.realpath(__file__)), "MSFragger.jar")
+
+default_jvm_mem_opts = ['-Xms512m', '-Xmx1g']
+
+license_agreement_text = '''
+Please provide pass a license key with the --key argument. You may obtain a key by agreeing to the terms at msfragger-upgrader.nesvilab.org/upgrader/.
+'''
+
+def real_dirname(path):
+    """Return the symlink-resolved, canonicalized directory-portion of path."""
+    return os.path.dirname(os.path.realpath(path))
+
+
+def java_executable():
+    """Return the executable name of the Java interpreter."""
+    java_home = getenv('JAVA_HOME')
+    java_bin = os.path.join('bin', 'java')
+
+    if java_home and access(os.path.join(java_home, java_bin), X_OK):
+        return os.path.join(java_home, java_bin)
+    else:
+        return 'java'
+
+
+def jvm_opts(argv):
+    """Construct list of Java arguments based on our argument list.
+
+    The argument list passed in argv must not include the script name.
+    The return value is a 3-tuple lists of strings of the form:
+      (memory_options, prop_options, passthrough_options)
+    """
+    mem_opts = []
+    prop_opts = []
+    pass_args = []
+
+    for arg in argv:
+        if arg.startswith('-D'):
+            prop_opts.append(arg)
+        elif arg.startswith('-XX'):
+            prop_opts.append(arg)
+        elif arg.startswith('-Xm'):
+            mem_opts.append(arg)
+        else:
+            pass_args.append(arg)
+
+    # In the original shell script the test coded below read:
+    #   if [ "$jvm_mem_opts" == "" ] && [ -z ${_JAVA_OPTIONS+x} ]
+    # To reproduce the behaviour of the above shell code fragment
+    # it is important to explictly check for equality with None
+    # in the second condition, so a null envar value counts as True!
+
+    if mem_opts == [] and getenv('_JAVA_OPTIONS') == None:
+        mem_opts = default_jvm_mem_opts
+
+    return (mem_opts, prop_opts, pass_args)
+
+
+def main():
+    java = java_executable()
+    jar_dir = real_dirname(sys.argv[0])
+    jar_path = os.path.join(jar_dir, jar_file)
+    jar_arg = '-jar'
+
+    (mem_opts, prop_opts, pass_args) = jvm_opts(sys.argv[1:])
+
+    if '--key' not in sys.argv:
+        print(license_agreement_text)
+        sys.exit(1)
+
+    java_args = [java] + mem_opts + prop_opts + [jar_arg] + [jar_path] + pass_args
+
+    sys.exit(subprocess.call(java_args))
+
+if __name__ == '__main__':
+    main()
diff --git a/recipes/msgf_plus/meta.yaml b/recipes/msgf_plus/meta.yaml
index 3be99cee50d81..228a710889f02 100644
--- a/recipes/msgf_plus/meta.yaml
+++ b/recipes/msgf_plus/meta.yaml
@@ -1,20 +1,22 @@
 package:
   name: msgf_plus
-  version: 2023.01.1202
+  version: 2024.03.26
 
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('msgf_plus', max_pin=None) }}
 
 source:
-  url: https://github.com/MSGFPlus/msgfplus/releases/download/v2023.01.12/MSGFPlus_v20230112.zip
-  sha256: ae9eb564b119ce54e5182fa9a9cc9b1d1c3e43489e81ed80279a442b55d5607c
+  url: https://github.com/MSGFPlus/msgfplus/releases/download/v2024.03.26/MSGFPlus_v20240326.zip
+  sha256: 01bacb4e74077f84c206f6f91eba67a29433d07d649f438b013a77217b0bfaac
 
 requirements:
   host:
-    - openjdk <=17
+    - openjdk >=11
   run:
-    - openjdk <=17
+    - openjdk >=11
     - python
 
 test:
@@ -33,7 +35,7 @@ about:
     spectra, different configurations of MS instruments and different
     experimental protocols).
 
-extra: 
+extra:
   identifiers:
     - biotools:MSGFplus
     - doi:10.1038/ncomms6277
diff --git a/recipes/msmetaenhancer/meta.yaml b/recipes/msmetaenhancer/meta.yaml
index f3d1f4ad42681..a241ca1e81132 100644
--- a/recipes/msmetaenhancer/meta.yaml
+++ b/recipes/msmetaenhancer/meta.yaml
@@ -1,22 +1,25 @@
-{% set name = "MSMetaEnhancer" %}
-{% set version = "0.3.0" %}
+{% set name = "msmetaenhancer" %}
+{% set version = "0.4.0" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: "https://github.com/RECETOX/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz"
-  sha256: 7d889be548db18ec1e34c04947b8f8c7d9660241d8142bdc9842052396475ba8
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/msmetaenhancer-{{ version }}.tar.gz
+  sha256: e422a3849a486613b08d04801c873fa369b170361b4e27c06c2531023a47823b
 
 build:
-  number: 1
+  number: 0
   noarch: python
-  script: "{{ PYTHON }} -m pip install . "
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('msmetaenhancer', max_pin="x.x") }}
 
 requirements:
   host:
     - python >=3.9
+    - poetry-core
     - pip
   run:
     - python >=3.9
@@ -27,12 +30,13 @@ requirements:
     - aiohttp
     - asyncstdlib
     - frozendict
+    - twine
     - tabulate
     - rdkit
     - multidict
     - aiocircuitbreaker
     - openpyxl
-    
+
 test:
   imports:
     - MSMetaEnhancer
@@ -40,6 +44,7 @@ test:
 about:
   home: https://github.com/RECETOX/MSMetaEnhancer
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary: "MSMetaEnhancer is a Python tool that adds more annotations (e.g. SMILES, InChI, CAS number) to MSP files."
   dev_url: "https://github.com/RECETOX/MSMetaEnhancer"
@@ -49,3 +54,6 @@ extra:
   recipe-maintainers:
     - xtrojak
     - martenson
+  identifiers:
+    - biotools:msmetaenhancer
+    - doi:10.21105/joss.04494
diff --git a/recipes/msstitch/meta.yaml b/recipes/msstitch/meta.yaml
index c3c0b0a5d4778..d44110c6617c3 100644
--- a/recipes/msstitch/meta.yaml
+++ b/recipes/msstitch/meta.yaml
@@ -1,16 +1,18 @@
 package:
   name: msstitch
-  version: "3.13"
+  version: "3.16"
 
 source:
-  url: https://files.pythonhosted.org/packages/2a/da/f3e27c11152cf2a0affedaf0409eb617ec96661c65d3ee1a5bd6f668c507/msstitch-3.13.tar.gz
-  sha256: 34f893da7ec9842caada7ad651e133e1960c2f16c7d456af36c25e3bd5eee2b4
+  url: https://files.pythonhosted.org/packages/79/40/38b264c211823bd0d158418557b728dd459d8b23e54f0309cc82e85bf883/msstitch-3.16.tar.gz
+  sha256: a4bad10c46545783e7829590db12c47459a614088bae06c4acd45e0456e402ee
 
 build:
   noarch: python
   number: 0
   entry_points:
     - msstitch=app.msstitch:main
+  run_exports:
+    - {{ pin_subpackage('msstitch', max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/msweep/meta.yaml b/recipes/msweep/meta.yaml
index 3d9468acf0f4c..911de4007f206 100644
--- a/recipes/msweep/meta.yaml
+++ b/recipes/msweep/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "mSWEEP" %}
-{% set version = "1.6.3" %}
-{% set sha256 = "c8b51056d176738e0b7c29ee1e4c2a1ac1931e299f15d8f4183b898bca915f8b" %}
+{% set version = "2.0.0" %}
+{% set sha256 = "b0bd02f1a7df6f691c03c4a43eaeea3df5389c77a9e90048136f01b6f16a396d" %}
 {% set user = "PROBIC" %}
 
 package:
@@ -12,8 +12,10 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 2
-  skip: false
+  number: 0
+  skip: true  # [osx]
+  run_exports:
+    - {{ pin_subpackage('msweep', max_pin='x') }}
 
 requirements:
   build:
@@ -31,7 +33,7 @@ requirements:
 
 test:
   commands:
-    - mSWEEP --help
+    - mSWEEP --help 2>&1 | grep cite
 
 about:
   home: https://github.com/PROBIC/mSWEEP
diff --git a/recipes/mtbseq/meta.yaml b/recipes/mtbseq/meta.yaml
index 0ea825181a1f7..6845ee9c51e25 100755
--- a/recipes/mtbseq/meta.yaml
+++ b/recipes/mtbseq/meta.yaml
@@ -1,13 +1,15 @@
+{% set version = "1.1.0" %}
+
 package:
   name: mtbseq
-  version: "1.0.4"
+  version: {{ version }}
 
 source:
-  url: https://github.com/ngs-fzb/MTBseq_source/archive/v{{ PKG_VERSION }}.zip
-  sha256: 21d5a8174a802e9b6a817a4f36149e586cb37ac6c40675e0314347c748457a3f
+  url: https://github.com/ngs-fzb/MTBseq_source/archive/v{{ version }}.zip
+  sha256: 6d0582ae44a180de78591e9c2dfa510afcb5f0ae0eeca1c049045b0c25c5594d
 
 build:
-  number: 2
+  number: 0
   noarch: generic
   
 requirements:
@@ -21,19 +23,16 @@ requirements:
     - perl-number-format
     - perl-statistics-basic >=1.6611
     - perl-mce >=1.836
-    - picard >=2.17.0
+    - picard >=2.17.0,<3
 
 test:
   commands:
-    - MTBseq --version >/dev/null
-    - MTBseq --help >/dev/null
-
+    - MTBseq --check >/dev/null
 
 about:
   home: https://github.com/ngs-fzb/MTBseq_source
   license: GPLv3
   license_file: GPL.md
-
   summary: "Pipeline for WGS analysis of M. tuberculosis"
   description: |
     MTBseq is a semi-automated pipeline for mapping, variant calling and
diff --git a/recipes/mtgrasp/build.sh b/recipes/mtgrasp/build.sh
new file mode 100644
index 0000000000000..41100de173091
--- /dev/null
+++ b/recipes/mtgrasp/build.sh
@@ -0,0 +1,7 @@
+#!/bin/bash
+set -eu -o pipefail
+
+mkdir -p ${PREFIX}/bin/
+cp *mtgrasp* ${PREFIX}/bin/
+cp -r data ${PREFIX}/bin/
+cp -r test ${PREFIX}/bin/
diff --git a/recipes/mtgrasp/meta.yaml b/recipes/mtgrasp/meta.yaml
new file mode 100644
index 0000000000000..629a1559ffd0b
--- /dev/null
+++ b/recipes/mtgrasp/meta.yaml
@@ -0,0 +1,44 @@
+{% set version = "1.1.3" %}
+{% set name = "mtGrasp" %}
+
+package:
+  name: {{ name | lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/bcgsc/{{ name }}/releases/download/v{{ version }}/{{ name }}-v{{ version }}.tar.gz
+  sha256: b9a8a250938fee584f73469fc33d04e1100d9af0475fac5f702ae373842b9e86 
+
+build:
+  number: 0
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage('mtgrasp', max_pin="x") }}
+
+requirements:
+  host:
+    - python
+  run:
+    - python
+    - snakemake
+    - blast >=2.9.0
+    - biopython
+    - seqtk
+    - abyss
+    - ntjoin
+    - bwa
+    - samtools
+    - pilon
+    - ntcard
+    - mitos >=2.1.7
+
+
+test:
+  commands:
+    - mtgrasp.py -h
+
+about:
+  home: https://github.com/bcgsc/mtGrasp
+  license: GPL-3.0
+  license_file: LICENSE
+  summary: 'reference-grade de novo animal mitochondrial genome assembly and standardization'
diff --git a/recipes/mtm-align/build.sh b/recipes/mtm-align/build.sh
new file mode 100644
index 0000000000000..f0a634f2e9b81
--- /dev/null
+++ b/recipes/mtm-align/build.sh
@@ -0,0 +1,16 @@
+#!/bin/bash
+set -ex
+
+cd src/
+
+## This doesn't seem to work reliably
+# the makefile directly calls g++, and doesn't use env variables
+# use an alias to redirect to the correct compiler without changing the makefile
+#alias "g++"=$CXX
+#make # builds the package
+
+## instead just build with a manual call to the compiler
+$CXX  -O3 -ffast-math -lm -o mTM-align main.cpp TMM.cpp UPGMA.cpp
+
+mkdir -p $PREFIX/bin
+mv mTM-align $PREFIX/bin/mtm-align
diff --git a/recipes/mtm-align/meta.yaml b/recipes/mtm-align/meta.yaml
new file mode 100644
index 0000000000000..4e78d94b7ce57
--- /dev/null
+++ b/recipes/mtm-align/meta.yaml
@@ -0,0 +1,29 @@
+{% set version = "20220104" %}
+{% set sha256 = "f7ed827ff2fb4ffdd85c4fa6a8e43f0eae776b4b4715896172f5fe52c4853d2e" %}
+package:
+  name: mtm-align
+  version: '{{version}}'
+
+source:
+  - url: http://yanglab.nankai.edu.cn/mTM-align/version/mTM-align.tar.bz2
+    sha256: '{{sha256}}'
+
+build:
+  skip: True # [osx]
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('mtm-align', max_pin="x") }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('cxx') }}
+
+test:
+  commands:
+    - mtm-align -h
+
+about:
+  home: http://yanglab.nankai.edu.cn/mTM-align/help/
+  license: Unknown
+  summary: Align multiple protein structures
diff --git a/recipes/mugsy/meta.yaml b/recipes/mugsy/meta.yaml
index d2923a91a8e4f..697b022bb83fd 100644
--- a/recipes/mugsy/meta.yaml
+++ b/recipes/mugsy/meta.yaml
@@ -10,11 +10,14 @@ source:
 
 build:
   noarch: generic
-  number: 4
+  number: 5
+  run_exports:
+    - {{ pin_subpackage('mugsy', max_pin="x") }}
 
 requirements:
   run:
     - perl
+    - sed
 
 about:
   home: http://mugsy.sourceforge.net
diff --git a/recipes/multiqc/meta.yaml b/recipes/multiqc/meta.yaml
index 899726746012b..0adabe213ea54 100644
--- a/recipes/multiqc/meta.yaml
+++ b/recipes/multiqc/meta.yaml
@@ -1,42 +1,49 @@
-{% set version = "1.14" %}
+{% set name = "multiqc" %}
+{% set version = "1.22.1" %}
 
 package:
-  name: multiqc
+  name: {{ name }}
   version: {{ version }}
 
 source:
-  url: https://github.com/ewels/MultiQC/archive/v{{ version }}.tar.gz
-  sha256: dd2b6a9c903c9ba30cf22d78952055f256ce3fe21355af3879bec25a181814cc
+  url: https://github.com/MultiQC/MultiQC/archive/v{{ version }}.tar.gz
+  sha256: c67bd69597ebc55b99b7f27f8f8d723bfb18b66607f41618ca27ffe7f2b1633f
 
 build:
   number: 0
+  noarch: python
   entry_points:
     - multiqc=multiqc.__main__:run_multiqc
-  noarch: python
-  script: {{ PYTHON }} -m pip install . --no-deps -vv
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv
+  run_exports:
+    - {{ pin_subpackage('multiqc', max_pin="x") }}
 
 requirements:
   host:
-    - python >=3.6
+    - python >=3.8
     - pip
   run:
-    - python >=3.6
-    - setuptools
+    - python >=3.8
     - click
     - coloredlogs
-    - future >0.14.0
+    - humanize
     - jinja2 >=3.0.0
-    - lzstring
+    - importlib-metadata
     - markdown
-    - matplotlib-base >=2.1.1
-    - networkx >=2.5.1
+    - plotly >=5.18
+    - python-kaleido
+    - pillow >=10.2.0
     - numpy
+    - packaging
+    - pydantic >=2.7.1
+    - pyaml-env
     - pyyaml >=4
     - requests
     - rich >=10
     - rich-click
-    - simplejson
     - spectra >=0.0.10
+    - tqdm
+    - typeguard
 
 test:
   # Python imports
@@ -46,29 +53,25 @@ test:
     - multiqc.plots
     - multiqc.templates
     - multiqc.utils
-
   commands:
     - multiqc --version
     - multiqc .
 
-
-
 about:
-  home: http://multiqc.info
-  license: GNU General Public License v3 (GPLv3)
+  home: "https://multiqc.info"
+  license: "GPL-3.0-or-later"
   license_family: GPL3
   license_file: LICENSE
-  summary: 'Create aggregate bioinformatics analysis reports across many samples and tools'
-  doc_url: http://multiqc.info/docs/
-  dev_url: https://github.com/ewels/MultiQC
+  summary: 'Create aggregate bioinformatics analysis reports across many samples and tools.'
+  doc_url: "https://multiqc.info/docs"
+  dev_url: "https://github.com/ewels/MultiQC"
 
 extra:
   container:
     # click requires a unicode locale when used with Python 3
     # extended-base generates en_US.UTF-8 locale and sets LC_ALL, LANG properly
     extended-base: true
-  skip-lints:
-    - uses_setuptools # uses pkg_resources
   identifiers:
     - biotools:multiqc
-    - doi:https://doi.org/10.1093/bioinformatics/btw354
+    - usegalaxy-eu:multiqc
+    - doi:10.1093/bioinformatics/btw354
diff --git a/recipes/multirnafold/0001-FIX-Makefile.patch b/recipes/multirnafold/0001-FIX-Makefile.patch
new file mode 100644
index 0000000000000..ff8e6c124469c
--- /dev/null
+++ b/recipes/multirnafold/0001-FIX-Makefile.patch
@@ -0,0 +1,925 @@
+diff --git a/Makefile b/Makefile
+index 6e3f2fe..28bb7e7 100644
+--- a/Makefile
++++ b/Makefile
+@@ -1,7 +1,7 @@
+ # makefile for the MultiRNAFold package
+ 
+-CC = g++
+-CFLAGS = -g -I./include -I./src/common -I./src/simfold -I./src/pairfold -I./src/multifold -w -Wno-deprecated 
++CXX = g++
++CXXFLAGS = -O2 -ggdb -I./include -I./src/common -I./src/simfold -I./src/pairfold -I./src/multifold -Wno-deprecated
+ # -pg for profiling
+ #-O3 
+ # -p is for profiler
+@@ -101,7 +101,7 @@ L_C_OBJS = $(L_C_SRCS:.cpp=.o)
+ L_S_OBJS = $(L_S_SRCS:.cpp=.o)
+ L_P_OBJS = $(L_P_SRCS:.cpp=.o)
+ L_M_OBJS = $(L_M_SRCS:.cpp=.o)
+- 
++
+ AR = ar
+ ARFLAGS = rv
+ RANLIB = ranlib
+@@ -114,78 +114,64 @@ default: $(LIB) $(SIMFOLD) $(SIMFOLD_PF) $(PAIRFOLD) $(PAIRFOLD_WEB)  $(MULTIFOL
+ $(LIB): $(L_C_OBJS) $(L_S_OBJS) $(L_P_OBJS) $(L_M_OBJS)
+ 	$(RM) $@
+ 	$(AR) $(ARFLAGS) $@ $(L_C_OBJS) $(L_S_OBJS) $(L_P_OBJS) $(L_M_OBJS)
+-	$(RANLIB) $@        
+-   
++	$(RANLIB) $@
++
+ $(SIMFOLD): $(S_OBJS) $(LIB)
+-	$(CC) -o $@ $@.o $(LFLAGS)
+-             
++	$(CXX) -o $@ $@.o $(LFLAGS)
++
+ $(SIMFOLD_PF): $(S2_OBJS) $(LIB)
+-	$(CC) -o $@ $@.o $(LFLAGS)
+-             
++	$(CXX) -o $@ $@.o $(LFLAGS)
++
+ $(PAIRFOLD): $(P_OBJS) $(LIB)
+-	$(CC) -o $@ $@.o $(LFLAGS)        
+-        
++	$(CXX) -o $@ $@.o $(LFLAGS)
++
+ $(PAIRFOLD_WEB): $(P2_OBJS) $(LIB)
+-	$(CC) -o $@ $@.o $(LFLAGS)        
+-        
++	$(CXX) -o $@ $@.o $(LFLAGS)
++
+ $(MULTIFOLD): $(M_OBJS) $(LIB)
+-	$(CC) -o $@ $@.o $(LFLAGS)                
+-        
++	$(CXX) -o $@ $@.o $(LFLAGS)
++
+ $(DRIVER): $(D_OBJS) $(LIB)
+-	$(CC) -o $@ $@.o $(LFLAGS)                
++	$(CXX) -o $@ $@.o $(LFLAGS)
+ 
+ $(PARTITION): $(PARTITION).o $(LIB)
+-	$(CC) -o $@ $@.o $(LFLAGS)                
++	$(CXX) -o $@ $@.o $(LFLAGS)
+ 
+ $(DRIVER1): $(DRIVER1).o $(LIB)
+ 	mpiCC  -o $(DRIVER1) $(DRIVER1).o $(LFLAGS) -L$(LAMDIR)/lib
+ 
+ $(DRIVER1).o: $(DRIVER1).cpp
+-	mpiCC  -c $(DRIVER1).cpp $(CFLAGS) -I$(LAMDIR)/include -o $(DRIVER1).o
++	mpiCC  -c $(DRIVER1).cpp $(CXXFLAGS) -I$(LAMDIR)/include -o $(DRIVER1).o
+ 
+ $(DRIVER2): $(DRIVER2).o $(LIB)
+-	mpiCC  -o $(DRIVER2) $(DRIVER2).o $(LFLAGS) -L$(LAMDIR)/lib 
++	mpiCC  -o $(DRIVER2) $(DRIVER2).o $(LFLAGS) -L$(LAMDIR)/lib
+ 
+ $(DRIVER2).o: $(DRIVER2).cpp
+-	mpiCC  -c $(DRIVER2).cpp $(CFLAGS) -I$(LAMDIR)/include -o $(DRIVER2).o
++	mpiCC  -c $(DRIVER2).cpp $(CXXFLAGS) -I$(LAMDIR)/include -o $(DRIVER2).o
+ 
+- 
+ $(RUNTIMEV): $(RUNTIMEV).o
+-	$(CC) -o $@ $@.o -L$(VIENNADIR)/lib -lviennapp $(LFLAGS)
++	$(CXX) -o $@ $@.o -L$(VIENNADIR)/lib -lviennapp $(LFLAGS)
+ 
+ $(RUNTIMEV).o: $(RUNTIMEV).cpp
+-	$(CC) -c $(RUNTIMEV).cpp -I$(VIENNADIR)/include $(CFLAGS)
+- 
+-                    
++	$(CXX) -c $(RUNTIMEV).cpp -I$(VIENNADIR)/include $(CXXFLAGS)
++
+ .SUFFIXES: .cpp
+ .cpp.o:
+-	$(CC) -c $*.cpp $(CFLAGS) -o $*.o
++	$(CXX) -c $*.cpp $(CXXFLAGS) -o $*.o
+ 
+ clean:
+ 	rm -f $(L_C_OBJS) $(L_S_OBJS) $(L_P_OBJS) $(L_M_OBJS)
+-	rm -f $(S_OBJS) $(S2_OBJS) $(P_OBJS) $(P2_OBJS) $(M_OBJS) $(D_OBJS) 
++	rm -f $(S_OBJS) $(S2_OBJS) $(P_OBJS) $(P2_OBJS) $(M_OBJS) $(D_OBJS)
+ # $(SIMFOLD) $(SIMFOLD_PF) $(PAIRFOLD) $(MULTIFOLD) $(DRIVER) *~ core
+ 	rm -f $(SRC_C)/*~ $(SRC_S)/*~ $(SRC_P)/*~ $(SRC_M)/*~ include/*~ *.a *.bak
+ 
+ depend:
+-	makedepend -- $(CFLAGS) -- $(L_C_SRCS) $(L_S_SRCS) $(L_P_SRCS) $(L_M_SRCS) $(S_SRCS) $(S2_SRCS) $(P_SRCS) $(M_SRCS) $(D_SRCS)
+-	
+-	
++	makedepend -Y $(CXXFLAGS) -- $(L_C_SRCS) $(L_S_SRCS) $(L_P_SRCS) $(L_M_SRCS) $(S_SRCS) $(S2_SRCS) $(P_SRCS) $(M_SRCS) $(D_SRCS)
++
+ # end of makefile
+ 
+ # DO NOT DELETE
+ 
+-src/common/common.o: /usr/include/stdio.h /usr/include/features.h
+-src/common/common.o: /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h
+-src/common/common.o: /usr/include/gnu/stubs.h /usr/include/gnu/stubs-32.h
+-src/common/common.o: /usr/include/bits/types.h /usr/include/bits/typesizes.h
+-src/common/common.o: /usr/include/libio.h /usr/include/_G_config.h
+-src/common/common.o: /usr/include/wchar.h /usr/include/bits/wchar.h
+-src/common/common.o: /usr/include/gconv.h /usr/include/bits/stdio_lim.h
+-src/common/common.o: /usr/include/bits/sys_errlist.h /usr/include/stdlib.h
+-src/common/common.o: /usr/include/math.h /usr/include/bits/huge_val.h
+-src/common/common.o: /usr/include/bits/mathdef.h
+-src/common/common.o: /usr/include/bits/mathcalls.h /usr/include/string.h
+ src/common/common.o: ./include/constants.h ./include/structs.h
+ src/common/common.o: ./include/externs.h src/common/common.h
+ src/common/common.o: ./src/simfold/s_partition_function.h
+@@ -195,16 +181,6 @@ src/common/common.o: ./src/simfold/s_energy_matrix.h
+ src/common/common.o: ./src/simfold/s_stacked_pair.h
+ src/common/common.o: ./src/simfold/s_multi_loop.h
+ src/common/common.o: ./src/simfold/s_multi_loop_sub.h
+-src/common/params.o: /usr/include/stdio.h /usr/include/features.h
+-src/common/params.o: /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h
+-src/common/params.o: /usr/include/gnu/stubs.h /usr/include/gnu/stubs-32.h
+-src/common/params.o: /usr/include/bits/types.h /usr/include/bits/typesizes.h
+-src/common/params.o: /usr/include/libio.h /usr/include/_G_config.h
+-src/common/params.o: /usr/include/wchar.h /usr/include/bits/wchar.h
+-src/common/params.o: /usr/include/gconv.h /usr/include/bits/stdio_lim.h
+-src/common/params.o: /usr/include/bits/sys_errlist.h /usr/include/math.h
+-src/common/params.o: /usr/include/bits/huge_val.h /usr/include/bits/mathdef.h
+-src/common/params.o: /usr/include/bits/mathcalls.h /usr/include/stdlib.h
+ src/common/params.o: src/common/params.h ./include/constants.h
+ src/common/params.o: src/common/common.h ./include/structs.h
+ src/common/params.o: ./src/simfold/s_partition_function.h
+@@ -214,60 +190,20 @@ src/common/params.o: ./src/simfold/s_energy_matrix.h
+ src/common/params.o: ./src/simfold/s_stacked_pair.h
+ src/common/params.o: ./src/simfold/s_multi_loop.h
+ src/common/params.o: ./src/simfold/s_multi_loop_sub.h ./include/externs.h
+-src/common/params.o: /usr/include/string.h
+ src/common/params.o: ./src/simfold/s_specific_functions.h
+ src/common/params.o: ./src/simfold/s_min_folding.h
+ src/common/params.o: ./src/simfold/s_sub_folding.h ./include/simfold.h
+ src/common/params.o: ./include/init.h
+-src/common/init.o: /usr/include/stdio.h /usr/include/features.h
+-src/common/init.o: /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h
+-src/common/init.o: /usr/include/gnu/stubs.h /usr/include/gnu/stubs-32.h
+-src/common/init.o: /usr/include/bits/types.h /usr/include/bits/typesizes.h
+-src/common/init.o: /usr/include/libio.h /usr/include/_G_config.h
+-src/common/init.o: /usr/include/wchar.h /usr/include/bits/wchar.h
+-src/common/init.o: /usr/include/gconv.h /usr/include/bits/stdio_lim.h
+-src/common/init.o: /usr/include/bits/sys_errlist.h /usr/include/stdlib.h
+-src/common/init.o: /usr/include/string.h /usr/include/math.h
+-src/common/init.o: /usr/include/bits/huge_val.h /usr/include/bits/mathdef.h
+-src/common/init.o: /usr/include/bits/mathcalls.h ./include/constants.h
+-src/common/init.o: ./include/structs.h ./include/globals.h
+-src/common/init.o: src/common/common.h ./src/simfold/s_partition_function.h
++src/common/init.o: ./include/constants.h ./include/structs.h
++src/common/init.o: ./include/globals.h src/common/common.h
++src/common/init.o: ./src/simfold/s_partition_function.h
+ src/common/init.o: ./src/simfold/s_hairpin_loop.h
+ src/common/init.o: ./src/simfold/s_internal_loop.h
+ src/common/init.o: ./src/simfold/s_energy_matrix.h
+ src/common/init.o: ./src/simfold/s_stacked_pair.h
+ src/common/init.o: ./src/simfold/s_multi_loop.h
+-src/common/init.o: ./src/simfold/s_multi_loop_sub.h
+-src/common/timer.o: /usr/include/math.h /usr/include/features.h
+-src/common/timer.o: /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h
+-src/common/timer.o: /usr/include/gnu/stubs.h /usr/include/gnu/stubs-32.h
+-src/common/timer.o: /usr/include/bits/huge_val.h /usr/include/bits/mathdef.h
+-src/common/timer.o: /usr/include/bits/mathcalls.h /usr/include/ctype.h
+-src/common/timer.o: /usr/include/bits/types.h /usr/include/bits/typesizes.h
+-src/common/timer.o: /usr/include/endian.h /usr/include/bits/endian.h
+-src/common/timer.o: /usr/include/time.h /usr/include/bits/time.h
+-src/common/timer.o: /usr/include/string.h /usr/include/sys/times.h
+-src/common/timer.o: /usr/include/limits.h src/common/timer.h
+-src/simfold/s_specific_functions.o: /usr/include/stdio.h
+-src/simfold/s_specific_functions.o: /usr/include/features.h
+-src/simfold/s_specific_functions.o: /usr/include/sys/cdefs.h
+-src/simfold/s_specific_functions.o: /usr/include/bits/wordsize.h
+-src/simfold/s_specific_functions.o: /usr/include/gnu/stubs.h
+-src/simfold/s_specific_functions.o: /usr/include/gnu/stubs-32.h
+-src/simfold/s_specific_functions.o: /usr/include/bits/types.h
+-src/simfold/s_specific_functions.o: /usr/include/bits/typesizes.h
+-src/simfold/s_specific_functions.o: /usr/include/libio.h
+-src/simfold/s_specific_functions.o: /usr/include/_G_config.h
+-src/simfold/s_specific_functions.o: /usr/include/wchar.h
+-src/simfold/s_specific_functions.o: /usr/include/bits/wchar.h
+-src/simfold/s_specific_functions.o: /usr/include/gconv.h
+-src/simfold/s_specific_functions.o: /usr/include/bits/stdio_lim.h
+-src/simfold/s_specific_functions.o: /usr/include/bits/sys_errlist.h
+-src/simfold/s_specific_functions.o: /usr/include/stdlib.h /usr/include/math.h
+-src/simfold/s_specific_functions.o: /usr/include/bits/huge_val.h
+-src/simfold/s_specific_functions.o: /usr/include/bits/mathdef.h
+-src/simfold/s_specific_functions.o: /usr/include/bits/mathcalls.h
+-src/simfold/s_specific_functions.o: /usr/include/string.h
++src/common/init.o: ./src/simfold/s_multi_loop_sub.h src/common/params.h
++src/common/timer.o: src/common/timer.h
+ src/simfold/s_specific_functions.o: ./include/constants.h ./include/structs.h
+ src/simfold/s_specific_functions.o: ./include/externs.h src/common/common.h
+ src/simfold/s_specific_functions.o: ./src/simfold/s_partition_function.h
+@@ -281,22 +217,6 @@ src/simfold/s_specific_functions.o: ./include/simfold.h ./include/init.h
+ src/simfold/s_specific_functions.o: ./src/simfold/s_specific_functions.h
+ src/simfold/s_specific_functions.o: ./src/simfold/s_min_folding.h
+ src/simfold/s_specific_functions.o: ./src/simfold/s_sub_folding.h
+-src/simfold/s_specific_functions.o: src/simfold/s_partition_function_complex.h
+-src/simfold/s_specific_functions.o: /usr/include/complex.h
+-src/simfold/s_specific_functions.o: /usr/include/bits/cmathcalls.h
+-src/simfold/s_min_folding.o: /usr/include/stdio.h /usr/include/features.h
+-src/simfold/s_min_folding.o: /usr/include/sys/cdefs.h
+-src/simfold/s_min_folding.o: /usr/include/bits/wordsize.h
+-src/simfold/s_min_folding.o: /usr/include/gnu/stubs.h
+-src/simfold/s_min_folding.o: /usr/include/gnu/stubs-32.h
+-src/simfold/s_min_folding.o: /usr/include/bits/types.h
+-src/simfold/s_min_folding.o: /usr/include/bits/typesizes.h
+-src/simfold/s_min_folding.o: /usr/include/libio.h /usr/include/_G_config.h
+-src/simfold/s_min_folding.o: /usr/include/wchar.h /usr/include/bits/wchar.h
+-src/simfold/s_min_folding.o: /usr/include/gconv.h
+-src/simfold/s_min_folding.o: /usr/include/bits/stdio_lim.h
+-src/simfold/s_min_folding.o: /usr/include/bits/sys_errlist.h
+-src/simfold/s_min_folding.o: /usr/include/string.h /usr/include/stdlib.h
+ src/simfold/s_min_folding.o: ./include/constants.h ./include/structs.h
+ src/simfold/s_min_folding.o: ./include/externs.h src/common/common.h
+ src/simfold/s_min_folding.o: ./src/simfold/s_partition_function.h
+@@ -309,22 +229,8 @@ src/simfold/s_min_folding.o: ./src/simfold/s_multi_loop_sub.h
+ src/simfold/s_min_folding.o: ./include/simfold.h ./include/init.h
+ src/simfold/s_min_folding.o: ./src/simfold/s_specific_functions.h
+ src/simfold/s_min_folding.o: ./src/simfold/s_min_folding.h
+-src/simfold/s_hairpin_loop.o: /usr/include/string.h /usr/include/features.h
+-src/simfold/s_hairpin_loop.o: /usr/include/sys/cdefs.h
+-src/simfold/s_hairpin_loop.o: /usr/include/bits/wordsize.h
+-src/simfold/s_hairpin_loop.o: /usr/include/gnu/stubs.h
+-src/simfold/s_hairpin_loop.o: /usr/include/gnu/stubs-32.h
+-src/simfold/s_hairpin_loop.o: /usr/include/ctype.h /usr/include/bits/types.h
+-src/simfold/s_hairpin_loop.o: /usr/include/bits/typesizes.h
+-src/simfold/s_hairpin_loop.o: /usr/include/endian.h
+-src/simfold/s_hairpin_loop.o: /usr/include/bits/endian.h
+ src/simfold/s_hairpin_loop.o: ./include/constants.h ./include/structs.h
+ src/simfold/s_hairpin_loop.o: ./include/externs.h src/common/common.h
+-src/simfold/s_hairpin_loop.o: /usr/include/stdio.h /usr/include/libio.h
+-src/simfold/s_hairpin_loop.o: /usr/include/_G_config.h /usr/include/wchar.h
+-src/simfold/s_hairpin_loop.o: /usr/include/bits/wchar.h /usr/include/gconv.h
+-src/simfold/s_hairpin_loop.o: /usr/include/bits/stdio_lim.h
+-src/simfold/s_hairpin_loop.o: /usr/include/bits/sys_errlist.h
+ src/simfold/s_hairpin_loop.o: ./src/simfold/s_partition_function.h
+ src/simfold/s_hairpin_loop.o: ./src/simfold/s_hairpin_loop.h
+ src/simfold/s_hairpin_loop.o: ./src/simfold/s_internal_loop.h
+@@ -334,20 +240,8 @@ src/simfold/s_hairpin_loop.o: ./src/simfold/s_multi_loop.h
+ src/simfold/s_hairpin_loop.o: ./src/simfold/s_multi_loop_sub.h
+ src/simfold/s_hairpin_loop.o: ./include/simfold.h ./include/init.h
+ src/simfold/s_hairpin_loop.o: src/common/params.h
+-src/simfold/s_stacked_pair.o: /usr/include/string.h /usr/include/features.h
+-src/simfold/s_stacked_pair.o: /usr/include/sys/cdefs.h
+-src/simfold/s_stacked_pair.o: /usr/include/bits/wordsize.h
+-src/simfold/s_stacked_pair.o: /usr/include/gnu/stubs.h
+-src/simfold/s_stacked_pair.o: /usr/include/gnu/stubs-32.h
+ src/simfold/s_stacked_pair.o: ./include/constants.h ./include/structs.h
+ src/simfold/s_stacked_pair.o: ./include/externs.h src/common/common.h
+-src/simfold/s_stacked_pair.o: /usr/include/stdio.h /usr/include/bits/types.h
+-src/simfold/s_stacked_pair.o: /usr/include/bits/typesizes.h
+-src/simfold/s_stacked_pair.o: /usr/include/libio.h /usr/include/_G_config.h
+-src/simfold/s_stacked_pair.o: /usr/include/wchar.h /usr/include/bits/wchar.h
+-src/simfold/s_stacked_pair.o: /usr/include/gconv.h
+-src/simfold/s_stacked_pair.o: /usr/include/bits/stdio_lim.h
+-src/simfold/s_stacked_pair.o: /usr/include/bits/sys_errlist.h
+ src/simfold/s_stacked_pair.o: ./src/simfold/s_partition_function.h
+ src/simfold/s_stacked_pair.o: ./src/simfold/s_hairpin_loop.h
+ src/simfold/s_stacked_pair.o: ./src/simfold/s_internal_loop.h
+@@ -357,22 +251,8 @@ src/simfold/s_stacked_pair.o: ./src/simfold/s_multi_loop.h
+ src/simfold/s_stacked_pair.o: ./src/simfold/s_multi_loop_sub.h
+ src/simfold/s_stacked_pair.o: ./include/simfold.h ./include/init.h
+ src/simfold/s_stacked_pair.o: src/common/params.h
+-src/simfold/s_energy_matrix.o: /usr/include/stdio.h /usr/include/features.h
+-src/simfold/s_energy_matrix.o: /usr/include/sys/cdefs.h
+-src/simfold/s_energy_matrix.o: /usr/include/bits/wordsize.h
+-src/simfold/s_energy_matrix.o: /usr/include/gnu/stubs.h
+-src/simfold/s_energy_matrix.o: /usr/include/gnu/stubs-32.h
+-src/simfold/s_energy_matrix.o: /usr/include/bits/types.h
+-src/simfold/s_energy_matrix.o: /usr/include/bits/typesizes.h
+-src/simfold/s_energy_matrix.o: /usr/include/libio.h /usr/include/_G_config.h
+-src/simfold/s_energy_matrix.o: /usr/include/wchar.h /usr/include/bits/wchar.h
+-src/simfold/s_energy_matrix.o: /usr/include/gconv.h
+-src/simfold/s_energy_matrix.o: /usr/include/bits/stdio_lim.h
+-src/simfold/s_energy_matrix.o: /usr/include/bits/sys_errlist.h
+-src/simfold/s_energy_matrix.o: /usr/include/string.h /usr/include/stdlib.h
+-src/simfold/s_energy_matrix.o: /usr/include/malloc.h ./include/constants.h
+-src/simfold/s_energy_matrix.o: ./include/structs.h ./include/externs.h
+-src/simfold/s_energy_matrix.o: src/common/common.h
++src/simfold/s_energy_matrix.o: ./include/constants.h ./include/structs.h
++src/simfold/s_energy_matrix.o: ./include/externs.h src/common/common.h
+ src/simfold/s_energy_matrix.o: ./src/simfold/s_partition_function.h
+ src/simfold/s_energy_matrix.o: ./src/simfold/s_hairpin_loop.h
+ src/simfold/s_energy_matrix.o: ./src/simfold/s_internal_loop.h
+@@ -381,19 +261,6 @@ src/simfold/s_energy_matrix.o: ./src/simfold/s_stacked_pair.h
+ src/simfold/s_energy_matrix.o: ./src/simfold/s_multi_loop.h
+ src/simfold/s_energy_matrix.o: ./src/simfold/s_multi_loop_sub.h
+ src/simfold/s_energy_matrix.o: ./include/simfold.h ./include/init.h
+-src/simfold/s_internal_loop.o: /usr/include/stdio.h /usr/include/features.h
+-src/simfold/s_internal_loop.o: /usr/include/sys/cdefs.h
+-src/simfold/s_internal_loop.o: /usr/include/bits/wordsize.h
+-src/simfold/s_internal_loop.o: /usr/include/gnu/stubs.h
+-src/simfold/s_internal_loop.o: /usr/include/gnu/stubs-32.h
+-src/simfold/s_internal_loop.o: /usr/include/bits/types.h
+-src/simfold/s_internal_loop.o: /usr/include/bits/typesizes.h
+-src/simfold/s_internal_loop.o: /usr/include/libio.h /usr/include/_G_config.h
+-src/simfold/s_internal_loop.o: /usr/include/wchar.h /usr/include/bits/wchar.h
+-src/simfold/s_internal_loop.o: /usr/include/gconv.h
+-src/simfold/s_internal_loop.o: /usr/include/bits/stdio_lim.h
+-src/simfold/s_internal_loop.o: /usr/include/bits/sys_errlist.h
+-src/simfold/s_internal_loop.o: /usr/include/string.h /usr/include/stdlib.h
+ src/simfold/s_internal_loop.o: ./src/simfold/s_internal_loop.h
+ src/simfold/s_internal_loop.o: ./include/constants.h ./include/structs.h
+ src/simfold/s_internal_loop.o: ./src/simfold/s_energy_matrix.h
+@@ -405,21 +272,8 @@ src/simfold/s_internal_loop.o: ./include/externs.h src/common/common.h
+ src/simfold/s_internal_loop.o: ./src/simfold/s_partition_function.h
+ src/simfold/s_internal_loop.o: ./include/simfold.h ./include/init.h
+ src/simfold/s_internal_loop.o: src/common/params.h
+-src/simfold/s_multi_loop.o: /usr/include/stdio.h /usr/include/features.h
+-src/simfold/s_multi_loop.o: /usr/include/sys/cdefs.h
+-src/simfold/s_multi_loop.o: /usr/include/bits/wordsize.h
+-src/simfold/s_multi_loop.o: /usr/include/gnu/stubs.h
+-src/simfold/s_multi_loop.o: /usr/include/gnu/stubs-32.h
+-src/simfold/s_multi_loop.o: /usr/include/bits/types.h
+-src/simfold/s_multi_loop.o: /usr/include/bits/typesizes.h
+-src/simfold/s_multi_loop.o: /usr/include/libio.h /usr/include/_G_config.h
+-src/simfold/s_multi_loop.o: /usr/include/wchar.h /usr/include/bits/wchar.h
+-src/simfold/s_multi_loop.o: /usr/include/gconv.h
+-src/simfold/s_multi_loop.o: /usr/include/bits/stdio_lim.h
+-src/simfold/s_multi_loop.o: /usr/include/bits/sys_errlist.h
+-src/simfold/s_multi_loop.o: /usr/include/malloc.h ./include/externs.h
+-src/simfold/s_multi_loop.o: ./include/structs.h ./include/constants.h
+-src/simfold/s_multi_loop.o: src/common/common.h
++src/simfold/s_multi_loop.o: ./include/externs.h ./include/structs.h
++src/simfold/s_multi_loop.o: ./include/constants.h src/common/common.h
+ src/simfold/s_multi_loop.o: ./src/simfold/s_partition_function.h
+ src/simfold/s_multi_loop.o: ./src/simfold/s_hairpin_loop.h
+ src/simfold/s_multi_loop.o: ./src/simfold/s_internal_loop.h
+@@ -428,22 +282,8 @@ src/simfold/s_multi_loop.o: ./src/simfold/s_stacked_pair.h
+ src/simfold/s_multi_loop.o: ./src/simfold/s_multi_loop.h
+ src/simfold/s_multi_loop.o: ./src/simfold/s_multi_loop_sub.h
+ src/simfold/s_multi_loop.o: ./include/simfold.h ./include/init.h
+-src/simfold/s_multi_loop_sub.o: /usr/include/stdio.h /usr/include/features.h
+-src/simfold/s_multi_loop_sub.o: /usr/include/sys/cdefs.h
+-src/simfold/s_multi_loop_sub.o: /usr/include/bits/wordsize.h
+-src/simfold/s_multi_loop_sub.o: /usr/include/gnu/stubs.h
+-src/simfold/s_multi_loop_sub.o: /usr/include/gnu/stubs-32.h
+-src/simfold/s_multi_loop_sub.o: /usr/include/bits/types.h
+-src/simfold/s_multi_loop_sub.o: /usr/include/bits/typesizes.h
+-src/simfold/s_multi_loop_sub.o: /usr/include/libio.h /usr/include/_G_config.h
+-src/simfold/s_multi_loop_sub.o: /usr/include/wchar.h
+-src/simfold/s_multi_loop_sub.o: /usr/include/bits/wchar.h
+-src/simfold/s_multi_loop_sub.o: /usr/include/gconv.h
+-src/simfold/s_multi_loop_sub.o: /usr/include/bits/stdio_lim.h
+-src/simfold/s_multi_loop_sub.o: /usr/include/bits/sys_errlist.h
+-src/simfold/s_multi_loop_sub.o: /usr/include/malloc.h ./include/externs.h
+-src/simfold/s_multi_loop_sub.o: ./include/structs.h ./include/constants.h
+-src/simfold/s_multi_loop_sub.o: src/common/common.h
++src/simfold/s_multi_loop_sub.o: ./include/externs.h ./include/structs.h
++src/simfold/s_multi_loop_sub.o: ./include/constants.h src/common/common.h
+ src/simfold/s_multi_loop_sub.o: ./src/simfold/s_partition_function.h
+ src/simfold/s_multi_loop_sub.o: ./src/simfold/s_hairpin_loop.h
+ src/simfold/s_multi_loop_sub.o: ./src/simfold/s_internal_loop.h
+@@ -452,20 +292,7 @@ src/simfold/s_multi_loop_sub.o: ./src/simfold/s_stacked_pair.h
+ src/simfold/s_multi_loop_sub.o: ./src/simfold/s_multi_loop.h
+ src/simfold/s_multi_loop_sub.o: ./src/simfold/s_multi_loop_sub.h
+ src/simfold/s_sub_folding.o: ./src/simfold/s_sub_folding.h
+-src/simfold/s_sub_folding.o: /usr/include/stdio.h /usr/include/features.h
+-src/simfold/s_sub_folding.o: /usr/include/sys/cdefs.h
+-src/simfold/s_sub_folding.o: /usr/include/bits/wordsize.h
+-src/simfold/s_sub_folding.o: /usr/include/gnu/stubs.h
+-src/simfold/s_sub_folding.o: /usr/include/gnu/stubs-32.h
+-src/simfold/s_sub_folding.o: /usr/include/bits/types.h
+-src/simfold/s_sub_folding.o: /usr/include/bits/typesizes.h
+-src/simfold/s_sub_folding.o: /usr/include/libio.h /usr/include/_G_config.h
+-src/simfold/s_sub_folding.o: /usr/include/wchar.h /usr/include/bits/wchar.h
+-src/simfold/s_sub_folding.o: /usr/include/gconv.h
+-src/simfold/s_sub_folding.o: /usr/include/bits/stdio_lim.h
+-src/simfold/s_sub_folding.o: /usr/include/bits/sys_errlist.h
+-src/simfold/s_sub_folding.o: /usr/include/string.h ./include/structs.h
+-src/simfold/s_sub_folding.o: ./include/constants.h
++src/simfold/s_sub_folding.o: ./include/structs.h ./include/constants.h
+ src/simfold/s_sub_folding.o: ./src/simfold/s_energy_matrix.h
+ src/simfold/s_sub_folding.o: ./src/simfold/s_stacked_pair.h
+ src/simfold/s_sub_folding.o: ./src/simfold/s_hairpin_loop.h
+@@ -475,30 +302,6 @@ src/simfold/s_sub_folding.o: ./src/simfold/s_multi_loop_sub.h
+ src/simfold/s_sub_folding.o: ./include/externs.h src/common/common.h
+ src/simfold/s_sub_folding.o: ./src/simfold/s_partition_function.h
+ src/simfold/s_sub_folding.o: ./include/simfold.h ./include/init.h
+-src/simfold/s_partition_function.o: /usr/include/stdio.h
+-src/simfold/s_partition_function.o: /usr/include/features.h
+-src/simfold/s_partition_function.o: /usr/include/sys/cdefs.h
+-src/simfold/s_partition_function.o: /usr/include/bits/wordsize.h
+-src/simfold/s_partition_function.o: /usr/include/gnu/stubs.h
+-src/simfold/s_partition_function.o: /usr/include/gnu/stubs-32.h
+-src/simfold/s_partition_function.o: /usr/include/bits/types.h
+-src/simfold/s_partition_function.o: /usr/include/bits/typesizes.h
+-src/simfold/s_partition_function.o: /usr/include/libio.h
+-src/simfold/s_partition_function.o: /usr/include/_G_config.h
+-src/simfold/s_partition_function.o: /usr/include/wchar.h
+-src/simfold/s_partition_function.o: /usr/include/bits/wchar.h
+-src/simfold/s_partition_function.o: /usr/include/gconv.h
+-src/simfold/s_partition_function.o: /usr/include/bits/stdio_lim.h
+-src/simfold/s_partition_function.o: /usr/include/bits/sys_errlist.h
+-src/simfold/s_partition_function.o: /usr/include/string.h
+-src/simfold/s_partition_function.o: /usr/include/stdlib.h
+-src/simfold/s_partition_function.o: /usr/include/malloc.h /usr/include/math.h
+-src/simfold/s_partition_function.o: /usr/include/bits/huge_val.h
+-src/simfold/s_partition_function.o: /usr/include/bits/mathdef.h
+-src/simfold/s_partition_function.o: /usr/include/bits/mathcalls.h
+-src/simfold/s_partition_function.o: /usr/include/ctype.h
+-src/simfold/s_partition_function.o: /usr/include/endian.h
+-src/simfold/s_partition_function.o: /usr/include/bits/endian.h
+ src/simfold/s_partition_function.o: ./include/constants.h ./include/structs.h
+ src/simfold/s_partition_function.o: ./include/externs.h src/common/common.h
+ src/simfold/s_partition_function.o: ./src/simfold/s_partition_function.h
+@@ -512,31 +315,6 @@ src/simfold/s_partition_function.o: ./include/simfold.h ./include/init.h
+ src/simfold/s_partition_function.o: ./src/simfold/s_min_folding.h
+ src/simfold/s_partition_function.o: ./src/simfold/s_sub_folding.h
+ src/simfold/s_partition_function.o: src/common/params.h
+-src/simfold/s_partition_function_complex.o: /usr/include/stdio.h
+-src/simfold/s_partition_function_complex.o: /usr/include/features.h
+-src/simfold/s_partition_function_complex.o: /usr/include/sys/cdefs.h
+-src/simfold/s_partition_function_complex.o: /usr/include/bits/wordsize.h
+-src/simfold/s_partition_function_complex.o: /usr/include/gnu/stubs.h
+-src/simfold/s_partition_function_complex.o: /usr/include/gnu/stubs-32.h
+-src/simfold/s_partition_function_complex.o: /usr/include/bits/types.h
+-src/simfold/s_partition_function_complex.o: /usr/include/bits/typesizes.h
+-src/simfold/s_partition_function_complex.o: /usr/include/libio.h
+-src/simfold/s_partition_function_complex.o: /usr/include/_G_config.h
+-src/simfold/s_partition_function_complex.o: /usr/include/wchar.h
+-src/simfold/s_partition_function_complex.o: /usr/include/bits/wchar.h
+-src/simfold/s_partition_function_complex.o: /usr/include/gconv.h
+-src/simfold/s_partition_function_complex.o: /usr/include/bits/stdio_lim.h
+-src/simfold/s_partition_function_complex.o: /usr/include/bits/sys_errlist.h
+-src/simfold/s_partition_function_complex.o: /usr/include/string.h
+-src/simfold/s_partition_function_complex.o: /usr/include/stdlib.h
+-src/simfold/s_partition_function_complex.o: /usr/include/malloc.h
+-src/simfold/s_partition_function_complex.o: /usr/include/math.h
+-src/simfold/s_partition_function_complex.o: /usr/include/bits/huge_val.h
+-src/simfold/s_partition_function_complex.o: /usr/include/bits/mathdef.h
+-src/simfold/s_partition_function_complex.o: /usr/include/bits/mathcalls.h
+-src/simfold/s_partition_function_complex.o: /usr/include/ctype.h
+-src/simfold/s_partition_function_complex.o: /usr/include/endian.h
+-src/simfold/s_partition_function_complex.o: /usr/include/bits/endian.h
+ src/simfold/s_partition_function_complex.o: ./include/constants.h
+ src/simfold/s_partition_function_complex.o: ./include/structs.h
+ src/simfold/s_partition_function_complex.o: ./include/externs.h
+@@ -551,32 +329,9 @@ src/simfold/s_partition_function_complex.o: ./src/simfold/s_multi_loop_sub.h
+ src/simfold/s_partition_function_complex.o: ./include/simfold.h
+ src/simfold/s_partition_function_complex.o: ./include/init.h
+ src/simfold/s_partition_function_complex.o: src/simfold/s_partition_function_complex.h
+-src/simfold/s_partition_function_complex.o: /usr/include/complex.h
+-src/simfold/s_partition_function_complex.o: /usr/include/bits/cmathcalls.h
+ src/simfold/s_partition_function_complex.o: ./src/simfold/s_min_folding.h
+ src/simfold/s_partition_function_complex.o: ./src/simfold/s_sub_folding.h
+ src/simfold/s_partition_function_complex.o: src/common/params.h
+-src/pairfold/p_specific_functions.o: /usr/include/stdio.h
+-src/pairfold/p_specific_functions.o: /usr/include/features.h
+-src/pairfold/p_specific_functions.o: /usr/include/sys/cdefs.h
+-src/pairfold/p_specific_functions.o: /usr/include/bits/wordsize.h
+-src/pairfold/p_specific_functions.o: /usr/include/gnu/stubs.h
+-src/pairfold/p_specific_functions.o: /usr/include/gnu/stubs-32.h
+-src/pairfold/p_specific_functions.o: /usr/include/bits/types.h
+-src/pairfold/p_specific_functions.o: /usr/include/bits/typesizes.h
+-src/pairfold/p_specific_functions.o: /usr/include/libio.h
+-src/pairfold/p_specific_functions.o: /usr/include/_G_config.h
+-src/pairfold/p_specific_functions.o: /usr/include/wchar.h
+-src/pairfold/p_specific_functions.o: /usr/include/bits/wchar.h
+-src/pairfold/p_specific_functions.o: /usr/include/gconv.h
+-src/pairfold/p_specific_functions.o: /usr/include/bits/stdio_lim.h
+-src/pairfold/p_specific_functions.o: /usr/include/bits/sys_errlist.h
+-src/pairfold/p_specific_functions.o: /usr/include/stdlib.h
+-src/pairfold/p_specific_functions.o: /usr/include/math.h
+-src/pairfold/p_specific_functions.o: /usr/include/bits/huge_val.h
+-src/pairfold/p_specific_functions.o: /usr/include/bits/mathdef.h
+-src/pairfold/p_specific_functions.o: /usr/include/bits/mathcalls.h
+-src/pairfold/p_specific_functions.o: /usr/include/string.h
+ src/pairfold/p_specific_functions.o: ./include/constants.h
+ src/pairfold/p_specific_functions.o: ./include/structs.h ./include/externs.h
+ src/pairfold/p_specific_functions.o: src/common/common.h
+@@ -597,19 +352,6 @@ src/pairfold/p_specific_functions.o: src/pairfold/p_multi_loop.h
+ src/pairfold/p_specific_functions.o: src/pairfold/p_multi_loop_sub.h
+ src/pairfold/p_specific_functions.o: src/pairfold/p_sub_folding.h
+ src/pairfold/p_specific_functions.o: src/pairfold/p_specific_functions.h
+-src/pairfold/p_min_folding.o: /usr/include/stdio.h /usr/include/features.h
+-src/pairfold/p_min_folding.o: /usr/include/sys/cdefs.h
+-src/pairfold/p_min_folding.o: /usr/include/bits/wordsize.h
+-src/pairfold/p_min_folding.o: /usr/include/gnu/stubs.h
+-src/pairfold/p_min_folding.o: /usr/include/gnu/stubs-32.h
+-src/pairfold/p_min_folding.o: /usr/include/bits/types.h
+-src/pairfold/p_min_folding.o: /usr/include/bits/typesizes.h
+-src/pairfold/p_min_folding.o: /usr/include/libio.h /usr/include/_G_config.h
+-src/pairfold/p_min_folding.o: /usr/include/wchar.h /usr/include/bits/wchar.h
+-src/pairfold/p_min_folding.o: /usr/include/gconv.h
+-src/pairfold/p_min_folding.o: /usr/include/bits/stdio_lim.h
+-src/pairfold/p_min_folding.o: /usr/include/bits/sys_errlist.h
+-src/pairfold/p_min_folding.o: /usr/include/string.h
+ src/pairfold/p_min_folding.o: src/pairfold/p_min_folding.h
+ src/pairfold/p_min_folding.o: ./include/structs.h ./include/constants.h
+ src/pairfold/p_min_folding.o: src/pairfold/p_energy_matrix.h
+@@ -627,20 +369,8 @@ src/pairfold/p_min_folding.o: ./src/simfold/s_stacked_pair.h
+ src/pairfold/p_min_folding.o: ./src/simfold/s_multi_loop.h
+ src/pairfold/p_min_folding.o: ./src/simfold/s_multi_loop_sub.h
+ src/pairfold/p_min_folding.o: ./include/pairfold.h ./include/init.h
+-src/pairfold/p_hairpin_loop.o: /usr/include/string.h /usr/include/features.h
+-src/pairfold/p_hairpin_loop.o: /usr/include/sys/cdefs.h
+-src/pairfold/p_hairpin_loop.o: /usr/include/bits/wordsize.h
+-src/pairfold/p_hairpin_loop.o: /usr/include/gnu/stubs.h
+-src/pairfold/p_hairpin_loop.o: /usr/include/gnu/stubs-32.h
+ src/pairfold/p_hairpin_loop.o: ./include/constants.h ./include/structs.h
+ src/pairfold/p_hairpin_loop.o: ./include/externs.h src/common/common.h
+-src/pairfold/p_hairpin_loop.o: /usr/include/stdio.h /usr/include/bits/types.h
+-src/pairfold/p_hairpin_loop.o: /usr/include/bits/typesizes.h
+-src/pairfold/p_hairpin_loop.o: /usr/include/libio.h /usr/include/_G_config.h
+-src/pairfold/p_hairpin_loop.o: /usr/include/wchar.h /usr/include/bits/wchar.h
+-src/pairfold/p_hairpin_loop.o: /usr/include/gconv.h
+-src/pairfold/p_hairpin_loop.o: /usr/include/bits/stdio_lim.h
+-src/pairfold/p_hairpin_loop.o: /usr/include/bits/sys_errlist.h
+ src/pairfold/p_hairpin_loop.o: ./src/simfold/s_partition_function.h
+ src/pairfold/p_hairpin_loop.o: ./src/simfold/s_hairpin_loop.h
+ src/pairfold/p_hairpin_loop.o: ./src/simfold/s_internal_loop.h
+@@ -650,20 +380,8 @@ src/pairfold/p_hairpin_loop.o: ./src/simfold/s_multi_loop.h
+ src/pairfold/p_hairpin_loop.o: ./src/simfold/s_multi_loop_sub.h
+ src/pairfold/p_hairpin_loop.o: ./include/pairfold.h ./include/init.h
+ src/pairfold/p_hairpin_loop.o: src/pairfold/p_hairpin_loop.h
+-src/pairfold/p_stacked_pair.o: /usr/include/string.h /usr/include/features.h
+-src/pairfold/p_stacked_pair.o: /usr/include/sys/cdefs.h
+-src/pairfold/p_stacked_pair.o: /usr/include/bits/wordsize.h
+-src/pairfold/p_stacked_pair.o: /usr/include/gnu/stubs.h
+-src/pairfold/p_stacked_pair.o: /usr/include/gnu/stubs-32.h
+ src/pairfold/p_stacked_pair.o: ./include/constants.h ./include/structs.h
+ src/pairfold/p_stacked_pair.o: ./include/externs.h src/common/common.h
+-src/pairfold/p_stacked_pair.o: /usr/include/stdio.h /usr/include/bits/types.h
+-src/pairfold/p_stacked_pair.o: /usr/include/bits/typesizes.h
+-src/pairfold/p_stacked_pair.o: /usr/include/libio.h /usr/include/_G_config.h
+-src/pairfold/p_stacked_pair.o: /usr/include/wchar.h /usr/include/bits/wchar.h
+-src/pairfold/p_stacked_pair.o: /usr/include/gconv.h
+-src/pairfold/p_stacked_pair.o: /usr/include/bits/stdio_lim.h
+-src/pairfold/p_stacked_pair.o: /usr/include/bits/sys_errlist.h
+ src/pairfold/p_stacked_pair.o: ./src/simfold/s_partition_function.h
+ src/pairfold/p_stacked_pair.o: ./src/simfold/s_hairpin_loop.h
+ src/pairfold/p_stacked_pair.o: ./src/simfold/s_internal_loop.h
+@@ -678,23 +396,8 @@ src/pairfold/p_stacked_pair.o: src/pairfold/p_hairpin_loop.h
+ src/pairfold/p_stacked_pair.o: src/pairfold/p_internal_loop.h
+ src/pairfold/p_stacked_pair.o: src/pairfold/p_multi_loop.h
+ src/pairfold/p_stacked_pair.o: src/pairfold/p_multi_loop_sub.h
+-src/pairfold/p_energy_matrix.o: /usr/include/stdio.h /usr/include/features.h
+-src/pairfold/p_energy_matrix.o: /usr/include/sys/cdefs.h
+-src/pairfold/p_energy_matrix.o: /usr/include/bits/wordsize.h
+-src/pairfold/p_energy_matrix.o: /usr/include/gnu/stubs.h
+-src/pairfold/p_energy_matrix.o: /usr/include/gnu/stubs-32.h
+-src/pairfold/p_energy_matrix.o: /usr/include/bits/types.h
+-src/pairfold/p_energy_matrix.o: /usr/include/bits/typesizes.h
+-src/pairfold/p_energy_matrix.o: /usr/include/libio.h /usr/include/_G_config.h
+-src/pairfold/p_energy_matrix.o: /usr/include/wchar.h
+-src/pairfold/p_energy_matrix.o: /usr/include/bits/wchar.h
+-src/pairfold/p_energy_matrix.o: /usr/include/gconv.h
+-src/pairfold/p_energy_matrix.o: /usr/include/bits/stdio_lim.h
+-src/pairfold/p_energy_matrix.o: /usr/include/bits/sys_errlist.h
+-src/pairfold/p_energy_matrix.o: /usr/include/string.h /usr/include/stdlib.h
+-src/pairfold/p_energy_matrix.o: /usr/include/malloc.h ./include/constants.h
+-src/pairfold/p_energy_matrix.o: ./include/structs.h ./include/externs.h
+-src/pairfold/p_energy_matrix.o: src/common/common.h
++src/pairfold/p_energy_matrix.o: ./include/constants.h ./include/structs.h
++src/pairfold/p_energy_matrix.o: ./include/externs.h src/common/common.h
+ src/pairfold/p_energy_matrix.o: ./src/simfold/s_partition_function.h
+ src/pairfold/p_energy_matrix.o: ./src/simfold/s_hairpin_loop.h
+ src/pairfold/p_energy_matrix.o: ./src/simfold/s_internal_loop.h
+@@ -709,20 +412,6 @@ src/pairfold/p_energy_matrix.o: src/pairfold/p_hairpin_loop.h
+ src/pairfold/p_energy_matrix.o: src/pairfold/p_internal_loop.h
+ src/pairfold/p_energy_matrix.o: src/pairfold/p_multi_loop.h
+ src/pairfold/p_energy_matrix.o: src/pairfold/p_multi_loop_sub.h
+-src/pairfold/p_internal_loop.o: /usr/include/stdio.h /usr/include/features.h
+-src/pairfold/p_internal_loop.o: /usr/include/sys/cdefs.h
+-src/pairfold/p_internal_loop.o: /usr/include/bits/wordsize.h
+-src/pairfold/p_internal_loop.o: /usr/include/gnu/stubs.h
+-src/pairfold/p_internal_loop.o: /usr/include/gnu/stubs-32.h
+-src/pairfold/p_internal_loop.o: /usr/include/bits/types.h
+-src/pairfold/p_internal_loop.o: /usr/include/bits/typesizes.h
+-src/pairfold/p_internal_loop.o: /usr/include/libio.h /usr/include/_G_config.h
+-src/pairfold/p_internal_loop.o: /usr/include/wchar.h
+-src/pairfold/p_internal_loop.o: /usr/include/bits/wchar.h
+-src/pairfold/p_internal_loop.o: /usr/include/gconv.h
+-src/pairfold/p_internal_loop.o: /usr/include/bits/stdio_lim.h
+-src/pairfold/p_internal_loop.o: /usr/include/bits/sys_errlist.h
+-src/pairfold/p_internal_loop.o: /usr/include/string.h /usr/include/stdlib.h
+ src/pairfold/p_internal_loop.o: src/pairfold/p_internal_loop.h
+ src/pairfold/p_internal_loop.o: ./include/constants.h ./include/structs.h
+ src/pairfold/p_internal_loop.o: src/pairfold/p_energy_matrix.h
+@@ -740,21 +429,8 @@ src/pairfold/p_internal_loop.o: ./src/simfold/s_multi_loop.h
+ src/pairfold/p_internal_loop.o: ./src/simfold/s_multi_loop_sub.h
+ src/pairfold/p_internal_loop.o: ./include/pairfold.h ./include/init.h
+ src/pairfold/p_internal_loop.o: src/pairfold/p_specific_functions.h
+-src/pairfold/p_multi_loop.o: /usr/include/stdio.h /usr/include/features.h
+-src/pairfold/p_multi_loop.o: /usr/include/sys/cdefs.h
+-src/pairfold/p_multi_loop.o: /usr/include/bits/wordsize.h
+-src/pairfold/p_multi_loop.o: /usr/include/gnu/stubs.h
+-src/pairfold/p_multi_loop.o: /usr/include/gnu/stubs-32.h
+-src/pairfold/p_multi_loop.o: /usr/include/bits/types.h
+-src/pairfold/p_multi_loop.o: /usr/include/bits/typesizes.h
+-src/pairfold/p_multi_loop.o: /usr/include/libio.h /usr/include/_G_config.h
+-src/pairfold/p_multi_loop.o: /usr/include/wchar.h /usr/include/bits/wchar.h
+-src/pairfold/p_multi_loop.o: /usr/include/gconv.h
+-src/pairfold/p_multi_loop.o: /usr/include/bits/stdio_lim.h
+-src/pairfold/p_multi_loop.o: /usr/include/bits/sys_errlist.h
+-src/pairfold/p_multi_loop.o: /usr/include/malloc.h ./include/externs.h
+-src/pairfold/p_multi_loop.o: ./include/structs.h ./include/constants.h
+-src/pairfold/p_multi_loop.o: src/common/common.h
++src/pairfold/p_multi_loop.o: ./include/externs.h ./include/structs.h
++src/pairfold/p_multi_loop.o: ./include/constants.h src/common/common.h
+ src/pairfold/p_multi_loop.o: ./src/simfold/s_partition_function.h
+ src/pairfold/p_multi_loop.o: ./src/simfold/s_hairpin_loop.h
+ src/pairfold/p_multi_loop.o: ./src/simfold/s_internal_loop.h
+@@ -769,23 +445,8 @@ src/pairfold/p_multi_loop.o: src/pairfold/p_hairpin_loop.h
+ src/pairfold/p_multi_loop.o: src/pairfold/p_internal_loop.h
+ src/pairfold/p_multi_loop.o: src/pairfold/p_multi_loop_sub.h
+ src/pairfold/p_multi_loop.o: ./include/pairfold.h ./include/init.h
+-src/pairfold/p_multi_loop_sub.o: /usr/include/stdio.h /usr/include/features.h
+-src/pairfold/p_multi_loop_sub.o: /usr/include/sys/cdefs.h
+-src/pairfold/p_multi_loop_sub.o: /usr/include/bits/wordsize.h
+-src/pairfold/p_multi_loop_sub.o: /usr/include/gnu/stubs.h
+-src/pairfold/p_multi_loop_sub.o: /usr/include/gnu/stubs-32.h
+-src/pairfold/p_multi_loop_sub.o: /usr/include/bits/types.h
+-src/pairfold/p_multi_loop_sub.o: /usr/include/bits/typesizes.h
+-src/pairfold/p_multi_loop_sub.o: /usr/include/libio.h
+-src/pairfold/p_multi_loop_sub.o: /usr/include/_G_config.h
+-src/pairfold/p_multi_loop_sub.o: /usr/include/wchar.h
+-src/pairfold/p_multi_loop_sub.o: /usr/include/bits/wchar.h
+-src/pairfold/p_multi_loop_sub.o: /usr/include/gconv.h
+-src/pairfold/p_multi_loop_sub.o: /usr/include/bits/stdio_lim.h
+-src/pairfold/p_multi_loop_sub.o: /usr/include/bits/sys_errlist.h
+-src/pairfold/p_multi_loop_sub.o: /usr/include/malloc.h ./include/externs.h
+-src/pairfold/p_multi_loop_sub.o: ./include/structs.h ./include/constants.h
+-src/pairfold/p_multi_loop_sub.o: src/common/common.h
++src/pairfold/p_multi_loop_sub.o: ./include/externs.h ./include/structs.h
++src/pairfold/p_multi_loop_sub.o: ./include/constants.h src/common/common.h
+ src/pairfold/p_multi_loop_sub.o: ./src/simfold/s_partition_function.h
+ src/pairfold/p_multi_loop_sub.o: ./src/simfold/s_hairpin_loop.h
+ src/pairfold/p_multi_loop_sub.o: ./src/simfold/s_internal_loop.h
+@@ -801,20 +462,7 @@ src/pairfold/p_multi_loop_sub.o: src/pairfold/p_internal_loop.h
+ src/pairfold/p_multi_loop_sub.o: src/pairfold/p_multi_loop.h
+ src/pairfold/p_multi_loop_sub.o: ./include/pairfold.h ./include/init.h
+ src/pairfold/p_sub_folding.o: src/pairfold/p_sub_folding.h
+-src/pairfold/p_sub_folding.o: /usr/include/stdio.h /usr/include/features.h
+-src/pairfold/p_sub_folding.o: /usr/include/sys/cdefs.h
+-src/pairfold/p_sub_folding.o: /usr/include/bits/wordsize.h
+-src/pairfold/p_sub_folding.o: /usr/include/gnu/stubs.h
+-src/pairfold/p_sub_folding.o: /usr/include/gnu/stubs-32.h
+-src/pairfold/p_sub_folding.o: /usr/include/bits/types.h
+-src/pairfold/p_sub_folding.o: /usr/include/bits/typesizes.h
+-src/pairfold/p_sub_folding.o: /usr/include/libio.h /usr/include/_G_config.h
+-src/pairfold/p_sub_folding.o: /usr/include/wchar.h /usr/include/bits/wchar.h
+-src/pairfold/p_sub_folding.o: /usr/include/gconv.h
+-src/pairfold/p_sub_folding.o: /usr/include/bits/stdio_lim.h
+-src/pairfold/p_sub_folding.o: /usr/include/bits/sys_errlist.h
+-src/pairfold/p_sub_folding.o: /usr/include/string.h ./include/structs.h
+-src/pairfold/p_sub_folding.o: ./include/constants.h
++src/pairfold/p_sub_folding.o: ./include/structs.h ./include/constants.h
+ src/pairfold/p_sub_folding.o: src/pairfold/p_energy_matrix.h
+ src/pairfold/p_sub_folding.o: src/pairfold/p_stacked_pair.h
+ src/pairfold/p_sub_folding.o: src/pairfold/p_hairpin_loop.h
+@@ -830,27 +478,6 @@ src/pairfold/p_sub_folding.o: ./src/simfold/s_stacked_pair.h
+ src/pairfold/p_sub_folding.o: ./src/simfold/s_multi_loop.h
+ src/pairfold/p_sub_folding.o: ./src/simfold/s_multi_loop_sub.h
+ src/pairfold/p_sub_folding.o: ./include/pairfold.h ./include/init.h
+-src/multifold/m_specific_functions.o: /usr/include/stdio.h
+-src/multifold/m_specific_functions.o: /usr/include/features.h
+-src/multifold/m_specific_functions.o: /usr/include/sys/cdefs.h
+-src/multifold/m_specific_functions.o: /usr/include/bits/wordsize.h
+-src/multifold/m_specific_functions.o: /usr/include/gnu/stubs.h
+-src/multifold/m_specific_functions.o: /usr/include/gnu/stubs-32.h
+-src/multifold/m_specific_functions.o: /usr/include/bits/types.h
+-src/multifold/m_specific_functions.o: /usr/include/bits/typesizes.h
+-src/multifold/m_specific_functions.o: /usr/include/libio.h
+-src/multifold/m_specific_functions.o: /usr/include/_G_config.h
+-src/multifold/m_specific_functions.o: /usr/include/wchar.h
+-src/multifold/m_specific_functions.o: /usr/include/bits/wchar.h
+-src/multifold/m_specific_functions.o: /usr/include/gconv.h
+-src/multifold/m_specific_functions.o: /usr/include/bits/stdio_lim.h
+-src/multifold/m_specific_functions.o: /usr/include/bits/sys_errlist.h
+-src/multifold/m_specific_functions.o: /usr/include/stdlib.h
+-src/multifold/m_specific_functions.o: /usr/include/math.h
+-src/multifold/m_specific_functions.o: /usr/include/bits/huge_val.h
+-src/multifold/m_specific_functions.o: /usr/include/bits/mathdef.h
+-src/multifold/m_specific_functions.o: /usr/include/bits/mathcalls.h
+-src/multifold/m_specific_functions.o: /usr/include/string.h
+ src/multifold/m_specific_functions.o: ./include/constants.h
+ src/multifold/m_specific_functions.o: ./include/structs.h ./include/externs.h
+ src/multifold/m_specific_functions.o: src/common/common.h
+@@ -869,19 +496,6 @@ src/multifold/m_specific_functions.o: src/multifold/m_hairpin_loop.h
+ src/multifold/m_specific_functions.o: src/multifold/m_internal_loop.h
+ src/multifold/m_specific_functions.o: src/multifold/m_multi_loop.h
+ src/multifold/m_specific_functions.o: src/multifold/m_specific_functions.h
+-src/multifold/m_min_folding.o: /usr/include/stdio.h /usr/include/features.h
+-src/multifold/m_min_folding.o: /usr/include/sys/cdefs.h
+-src/multifold/m_min_folding.o: /usr/include/bits/wordsize.h
+-src/multifold/m_min_folding.o: /usr/include/gnu/stubs.h
+-src/multifold/m_min_folding.o: /usr/include/gnu/stubs-32.h
+-src/multifold/m_min_folding.o: /usr/include/bits/types.h
+-src/multifold/m_min_folding.o: /usr/include/bits/typesizes.h
+-src/multifold/m_min_folding.o: /usr/include/libio.h /usr/include/_G_config.h
+-src/multifold/m_min_folding.o: /usr/include/wchar.h /usr/include/bits/wchar.h
+-src/multifold/m_min_folding.o: /usr/include/gconv.h
+-src/multifold/m_min_folding.o: /usr/include/bits/stdio_lim.h
+-src/multifold/m_min_folding.o: /usr/include/bits/sys_errlist.h
+-src/multifold/m_min_folding.o: /usr/include/string.h
+ src/multifold/m_min_folding.o: src/multifold/m_min_folding.h
+ src/multifold/m_min_folding.o: ./include/structs.h ./include/constants.h
+ src/multifold/m_min_folding.o: src/multifold/m_energy_matrix.h
+@@ -899,22 +513,8 @@ src/multifold/m_min_folding.o: ./src/simfold/s_multi_loop.h
+ src/multifold/m_min_folding.o: ./src/simfold/s_multi_loop_sub.h
+ src/multifold/m_min_folding.o: ./include/multifold.h ./include/init.h
+ src/multifold/m_min_folding.o: src/multifold/m_specific_functions.h
+-src/multifold/m_hairpin_loop.o: /usr/include/string.h /usr/include/features.h
+-src/multifold/m_hairpin_loop.o: /usr/include/sys/cdefs.h
+-src/multifold/m_hairpin_loop.o: /usr/include/bits/wordsize.h
+-src/multifold/m_hairpin_loop.o: /usr/include/gnu/stubs.h
+-src/multifold/m_hairpin_loop.o: /usr/include/gnu/stubs-32.h
+ src/multifold/m_hairpin_loop.o: ./include/constants.h ./include/structs.h
+ src/multifold/m_hairpin_loop.o: ./include/externs.h src/common/common.h
+-src/multifold/m_hairpin_loop.o: /usr/include/stdio.h
+-src/multifold/m_hairpin_loop.o: /usr/include/bits/types.h
+-src/multifold/m_hairpin_loop.o: /usr/include/bits/typesizes.h
+-src/multifold/m_hairpin_loop.o: /usr/include/libio.h /usr/include/_G_config.h
+-src/multifold/m_hairpin_loop.o: /usr/include/wchar.h
+-src/multifold/m_hairpin_loop.o: /usr/include/bits/wchar.h
+-src/multifold/m_hairpin_loop.o: /usr/include/gconv.h
+-src/multifold/m_hairpin_loop.o: /usr/include/bits/stdio_lim.h
+-src/multifold/m_hairpin_loop.o: /usr/include/bits/sys_errlist.h
+ src/multifold/m_hairpin_loop.o: ./src/simfold/s_partition_function.h
+ src/multifold/m_hairpin_loop.o: ./src/simfold/s_hairpin_loop.h
+ src/multifold/m_hairpin_loop.o: ./src/simfold/s_internal_loop.h
+@@ -925,22 +525,8 @@ src/multifold/m_hairpin_loop.o: ./src/simfold/s_multi_loop_sub.h
+ src/multifold/m_hairpin_loop.o: ./include/multifold.h ./include/init.h
+ src/multifold/m_hairpin_loop.o: src/multifold/m_hairpin_loop.h
+ src/multifold/m_hairpin_loop.o: src/multifold/m_specific_functions.h
+-src/multifold/m_stacked_pair.o: /usr/include/string.h /usr/include/features.h
+-src/multifold/m_stacked_pair.o: /usr/include/sys/cdefs.h
+-src/multifold/m_stacked_pair.o: /usr/include/bits/wordsize.h
+-src/multifold/m_stacked_pair.o: /usr/include/gnu/stubs.h
+-src/multifold/m_stacked_pair.o: /usr/include/gnu/stubs-32.h
+ src/multifold/m_stacked_pair.o: ./include/constants.h ./include/structs.h
+ src/multifold/m_stacked_pair.o: ./include/externs.h src/common/common.h
+-src/multifold/m_stacked_pair.o: /usr/include/stdio.h
+-src/multifold/m_stacked_pair.o: /usr/include/bits/types.h
+-src/multifold/m_stacked_pair.o: /usr/include/bits/typesizes.h
+-src/multifold/m_stacked_pair.o: /usr/include/libio.h /usr/include/_G_config.h
+-src/multifold/m_stacked_pair.o: /usr/include/wchar.h
+-src/multifold/m_stacked_pair.o: /usr/include/bits/wchar.h
+-src/multifold/m_stacked_pair.o: /usr/include/gconv.h
+-src/multifold/m_stacked_pair.o: /usr/include/bits/stdio_lim.h
+-src/multifold/m_stacked_pair.o: /usr/include/bits/sys_errlist.h
+ src/multifold/m_stacked_pair.o: ./src/simfold/s_partition_function.h
+ src/multifold/m_stacked_pair.o: ./src/simfold/s_hairpin_loop.h
+ src/multifold/m_stacked_pair.o: ./src/simfold/s_internal_loop.h
+@@ -955,24 +541,8 @@ src/multifold/m_stacked_pair.o: src/multifold/m_hairpin_loop.h
+ src/multifold/m_stacked_pair.o: src/multifold/m_internal_loop.h
+ src/multifold/m_stacked_pair.o: src/multifold/m_multi_loop.h
+ src/multifold/m_stacked_pair.o: src/multifold/m_specific_functions.h
+-src/multifold/m_energy_matrix.o: /usr/include/stdio.h /usr/include/features.h
+-src/multifold/m_energy_matrix.o: /usr/include/sys/cdefs.h
+-src/multifold/m_energy_matrix.o: /usr/include/bits/wordsize.h
+-src/multifold/m_energy_matrix.o: /usr/include/gnu/stubs.h
+-src/multifold/m_energy_matrix.o: /usr/include/gnu/stubs-32.h
+-src/multifold/m_energy_matrix.o: /usr/include/bits/types.h
+-src/multifold/m_energy_matrix.o: /usr/include/bits/typesizes.h
+-src/multifold/m_energy_matrix.o: /usr/include/libio.h
+-src/multifold/m_energy_matrix.o: /usr/include/_G_config.h
+-src/multifold/m_energy_matrix.o: /usr/include/wchar.h
+-src/multifold/m_energy_matrix.o: /usr/include/bits/wchar.h
+-src/multifold/m_energy_matrix.o: /usr/include/gconv.h
+-src/multifold/m_energy_matrix.o: /usr/include/bits/stdio_lim.h
+-src/multifold/m_energy_matrix.o: /usr/include/bits/sys_errlist.h
+-src/multifold/m_energy_matrix.o: /usr/include/string.h /usr/include/stdlib.h
+-src/multifold/m_energy_matrix.o: /usr/include/malloc.h ./include/constants.h
+-src/multifold/m_energy_matrix.o: ./include/structs.h ./include/externs.h
+-src/multifold/m_energy_matrix.o: src/common/common.h
++src/multifold/m_energy_matrix.o: ./include/constants.h ./include/structs.h
++src/multifold/m_energy_matrix.o: ./include/externs.h src/common/common.h
+ src/multifold/m_energy_matrix.o: ./src/simfold/s_partition_function.h
+ src/multifold/m_energy_matrix.o: ./src/simfold/s_hairpin_loop.h
+ src/multifold/m_energy_matrix.o: ./src/simfold/s_internal_loop.h
+@@ -986,21 +556,6 @@ src/multifold/m_energy_matrix.o: src/multifold/m_stacked_pair.h
+ src/multifold/m_energy_matrix.o: src/multifold/m_hairpin_loop.h
+ src/multifold/m_energy_matrix.o: src/multifold/m_internal_loop.h
+ src/multifold/m_energy_matrix.o: src/multifold/m_multi_loop.h
+-src/multifold/m_internal_loop.o: /usr/include/stdio.h /usr/include/features.h
+-src/multifold/m_internal_loop.o: /usr/include/sys/cdefs.h
+-src/multifold/m_internal_loop.o: /usr/include/bits/wordsize.h
+-src/multifold/m_internal_loop.o: /usr/include/gnu/stubs.h
+-src/multifold/m_internal_loop.o: /usr/include/gnu/stubs-32.h
+-src/multifold/m_internal_loop.o: /usr/include/bits/types.h
+-src/multifold/m_internal_loop.o: /usr/include/bits/typesizes.h
+-src/multifold/m_internal_loop.o: /usr/include/libio.h
+-src/multifold/m_internal_loop.o: /usr/include/_G_config.h
+-src/multifold/m_internal_loop.o: /usr/include/wchar.h
+-src/multifold/m_internal_loop.o: /usr/include/bits/wchar.h
+-src/multifold/m_internal_loop.o: /usr/include/gconv.h
+-src/multifold/m_internal_loop.o: /usr/include/bits/stdio_lim.h
+-src/multifold/m_internal_loop.o: /usr/include/bits/sys_errlist.h
+-src/multifold/m_internal_loop.o: /usr/include/string.h /usr/include/stdlib.h
+ src/multifold/m_internal_loop.o: src/multifold/m_internal_loop.h
+ src/multifold/m_internal_loop.o: ./include/constants.h ./include/structs.h
+ src/multifold/m_internal_loop.o: src/multifold/m_energy_matrix.h
+@@ -1017,21 +572,8 @@ src/multifold/m_internal_loop.o: ./src/simfold/s_multi_loop.h
+ src/multifold/m_internal_loop.o: ./src/simfold/s_multi_loop_sub.h
+ src/multifold/m_internal_loop.o: ./include/multifold.h ./include/init.h
+ src/multifold/m_internal_loop.o: src/multifold/m_specific_functions.h
+-src/multifold/m_multi_loop.o: /usr/include/stdio.h /usr/include/features.h
+-src/multifold/m_multi_loop.o: /usr/include/sys/cdefs.h
+-src/multifold/m_multi_loop.o: /usr/include/bits/wordsize.h
+-src/multifold/m_multi_loop.o: /usr/include/gnu/stubs.h
+-src/multifold/m_multi_loop.o: /usr/include/gnu/stubs-32.h
+-src/multifold/m_multi_loop.o: /usr/include/bits/types.h
+-src/multifold/m_multi_loop.o: /usr/include/bits/typesizes.h
+-src/multifold/m_multi_loop.o: /usr/include/libio.h /usr/include/_G_config.h
+-src/multifold/m_multi_loop.o: /usr/include/wchar.h /usr/include/bits/wchar.h
+-src/multifold/m_multi_loop.o: /usr/include/gconv.h
+-src/multifold/m_multi_loop.o: /usr/include/bits/stdio_lim.h
+-src/multifold/m_multi_loop.o: /usr/include/bits/sys_errlist.h
+-src/multifold/m_multi_loop.o: /usr/include/malloc.h ./include/externs.h
+-src/multifold/m_multi_loop.o: ./include/structs.h ./include/constants.h
+-src/multifold/m_multi_loop.o: src/common/common.h
++src/multifold/m_multi_loop.o: ./include/externs.h ./include/structs.h
++src/multifold/m_multi_loop.o: ./include/constants.h src/common/common.h
+ src/multifold/m_multi_loop.o: ./src/simfold/s_partition_function.h
+ src/multifold/m_multi_loop.o: ./src/simfold/s_hairpin_loop.h
+ src/multifold/m_multi_loop.o: ./src/simfold/s_internal_loop.h
+@@ -1046,68 +588,31 @@ src/multifold/m_multi_loop.o: src/multifold/m_hairpin_loop.h
+ src/multifold/m_multi_loop.o: src/multifold/m_internal_loop.h
+ src/multifold/m_multi_loop.o: ./include/multifold.h ./include/init.h
+ src/multifold/m_multi_loop.o: src/multifold/m_specific_functions.h
+-simfold.o: /usr/include/stdio.h /usr/include/features.h
+-simfold.o: /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h
+-simfold.o: /usr/include/gnu/stubs.h /usr/include/gnu/stubs-32.h
+-simfold.o: /usr/include/bits/types.h /usr/include/bits/typesizes.h
+-simfold.o: /usr/include/libio.h /usr/include/_G_config.h /usr/include/wchar.h
+-simfold.o: /usr/include/bits/wchar.h /usr/include/gconv.h
+-simfold.o: /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h
+-simfold.o: /usr/include/string.h /usr/include/stdlib.h /usr/include/time.h
+-simfold.o: /usr/include/bits/time.h /usr/include/unistd.h
+-simfold.o: /usr/include/bits/posix_opt.h /usr/include/bits/confname.h
+ simfold.o: ./include/simfold.h ./include/constants.h ./include/init.h
+ simfold.o: ./include/externs.h ./include/structs.h src/common/params.h
+-simfold_pf.o: /usr/include/stdio.h /usr/include/features.h
+-simfold_pf.o: /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h
+-simfold_pf.o: /usr/include/gnu/stubs.h /usr/include/gnu/stubs-32.h
+-simfold_pf.o: /usr/include/bits/types.h /usr/include/bits/typesizes.h
+-simfold_pf.o: /usr/include/libio.h /usr/include/_G_config.h
+-simfold_pf.o: /usr/include/wchar.h /usr/include/bits/wchar.h
+-simfold_pf.o: /usr/include/gconv.h /usr/include/bits/stdio_lim.h
+-simfold_pf.o: /usr/include/bits/sys_errlist.h /usr/include/string.h
+-simfold_pf.o: /usr/include/stdlib.h /usr/include/time.h
+-simfold_pf.o: /usr/include/bits/time.h /usr/include/unistd.h
+-simfold_pf.o: /usr/include/bits/posix_opt.h /usr/include/bits/confname.h
++simfold.o: ./src/simfold/s_partition_function.h
++simfold.o: ./src/simfold/s_hairpin_loop.h ./src/simfold/s_internal_loop.h
++simfold.o: ./src/simfold/s_energy_matrix.h ./src/simfold/s_stacked_pair.h
++simfold.o: ./src/simfold/s_multi_loop.h ./src/simfold/s_multi_loop_sub.h
++simfold.o: src/common/common.h
+ simfold_pf.o: ./include/simfold.h ./include/constants.h ./include/init.h
+ simfold_pf.o: ./include/externs.h ./include/structs.h src/common/params.h
+ simfold_pf.o: ./src/simfold/s_partition_function.h
+ simfold_pf.o: ./src/simfold/s_hairpin_loop.h ./src/simfold/s_internal_loop.h
+ simfold_pf.o: ./src/simfold/s_energy_matrix.h ./src/simfold/s_stacked_pair.h
+ simfold_pf.o: ./src/simfold/s_multi_loop.h ./src/simfold/s_multi_loop_sub.h
+-pairfold.o: /usr/include/stdio.h /usr/include/features.h
+-pairfold.o: /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h
+-pairfold.o: /usr/include/gnu/stubs.h /usr/include/gnu/stubs-32.h
+-pairfold.o: /usr/include/bits/types.h /usr/include/bits/typesizes.h
+-pairfold.o: /usr/include/libio.h /usr/include/_G_config.h
+-pairfold.o: /usr/include/wchar.h /usr/include/bits/wchar.h
+-pairfold.o: /usr/include/gconv.h /usr/include/bits/stdio_lim.h
+-pairfold.o: /usr/include/bits/sys_errlist.h /usr/include/string.h
+-pairfold.o: /usr/include/stdlib.h /usr/include/time.h
+-pairfold.o: /usr/include/bits/time.h ./include/pairfold.h
+-pairfold.o: ./include/constants.h ./include/init.h ./include/externs.h
+-pairfold.o: ./include/structs.h src/common/timer.h /usr/include/sys/times.h
+-pairfold.o: /usr/include/limits.h
+-multifold.o: /usr/include/stdio.h /usr/include/features.h
+-multifold.o: /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h
+-multifold.o: /usr/include/gnu/stubs.h /usr/include/gnu/stubs-32.h
+-multifold.o: /usr/include/bits/types.h /usr/include/bits/typesizes.h
+-multifold.o: /usr/include/libio.h /usr/include/_G_config.h
+-multifold.o: /usr/include/wchar.h /usr/include/bits/wchar.h
+-multifold.o: /usr/include/gconv.h /usr/include/bits/stdio_lim.h
+-multifold.o: /usr/include/bits/sys_errlist.h /usr/include/string.h
+-multifold.o: /usr/include/stdlib.h ./include/multifold.h
+-multifold.o: ./include/constants.h ./include/init.h ./include/externs.h
+-multifold.o: ./include/structs.h
+-test_get_counts.o: /usr/include/stdio.h /usr/include/features.h
+-test_get_counts.o: /usr/include/sys/cdefs.h /usr/include/bits/wordsize.h
+-test_get_counts.o: /usr/include/gnu/stubs.h /usr/include/gnu/stubs-32.h
+-test_get_counts.o: /usr/include/bits/types.h /usr/include/bits/typesizes.h
+-test_get_counts.o: /usr/include/libio.h /usr/include/_G_config.h
+-test_get_counts.o: /usr/include/wchar.h /usr/include/bits/wchar.h
+-test_get_counts.o: /usr/include/gconv.h /usr/include/bits/stdio_lim.h
+-test_get_counts.o: /usr/include/bits/sys_errlist.h /usr/include/string.h
+-test_get_counts.o: /usr/include/stdlib.h /usr/include/time.h
+-test_get_counts.o: /usr/include/bits/time.h ./include/simfold.h
+-test_get_counts.o: ./include/constants.h ./include/init.h ./include/externs.h
+-test_get_counts.o: ./include/structs.h src/common/params.h
++pairfold.o: ./include/pairfold.h ./include/constants.h ./include/init.h
++pairfold.o: ./include/externs.h ./include/structs.h src/common/timer.h
++multifold.o: ./include/multifold.h ./include/constants.h ./include/init.h
++multifold.o: ./include/externs.h ./include/structs.h
++feature_description.o: ./include/simfold.h ./include/constants.h
++feature_description.o: ./include/init.h ./include/externs.h
++feature_description.o: ./include/structs.h src/common/params.h
++feature_description.o: src/common/common.h
++feature_description.o: ./src/simfold/s_partition_function.h
++feature_description.o: ./src/simfold/s_hairpin_loop.h
++feature_description.o: ./src/simfold/s_internal_loop.h
++feature_description.o: ./src/simfold/s_energy_matrix.h
++feature_description.o: ./src/simfold/s_stacked_pair.h
++feature_description.o: ./src/simfold/s_multi_loop.h
++feature_description.o: ./src/simfold/s_multi_loop_sub.h
diff --git a/recipes/multirnafold/0002-FIX-printf-missing-arg.patch b/recipes/multirnafold/0002-FIX-printf-missing-arg.patch
new file mode 100644
index 0000000000000..471631385a018
--- /dev/null
+++ b/recipes/multirnafold/0002-FIX-printf-missing-arg.patch
@@ -0,0 +1,26 @@
+diff --git a/simfold.cpp b/simfold.cpp
+index 08cffe2..0ca03e3 100644
+--- a/simfold.cpp
++++ b/simfold.cpp
+@@ -64,7 +64,7 @@ void usage (const char *prog)
+     printf ("Examples:\n");
+     printf ("\t%s -s \"GCAACGAUGACAUACAUCGCUAGUCGACGC\" -n 10 \n", prog);
+     printf ("\t%s -s \"GCAACGAUGACAUACAUCGCUAGUCGACGC\" -n 10 -r \"(____________________________)\"\n", prog);
+-    printf ("\t%s -s \"GCAACGAUGACAUACAUCGCUAGUCGACGC\" -p params/CG_best_parameters_ISMB2007.txt\n");
++    printf ("\t%s -s \"GCAACGAUGACAUACAUCGCUAGUCGACGC\" -p params/CG_best_parameters_ISMB2007.txt\n", prog);
+     exit (0);
+ }
+ 
+diff --git a/simfold_pf.cpp b/simfold_pf.cpp
+index e3ba56e..424ee85 100644
+--- a/simfold_pf.cpp
++++ b/simfold_pf.cpp
+@@ -35,7 +35,7 @@ void usage (const char *prog)
+     printf ("Examples:\n");
+     printf ("\t%s -s \"GCAACGAUGACAUACAUCGCUAGUCGACGC\"\n", prog);
+     printf ("\t%s -s \"GCAACGAUGACAUACAUCGCUAGUCGACGC\" -t 0.5\n", prog);
+-    printf ("\t%s -s \"GCAACGAUGACAUACAUCGCUAGUCGACGC\" -p params/CG_best_parameters_ISMB2007.txt\n");
++    printf ("\t%s -s \"GCAACGAUGACAUACAUCGCUAGUCGACGC\" -p params/CG_best_parameters_ISMB2007.txt\n", prog);
+     exit (0);
+ }
+ 
diff --git a/recipes/multirnafold/0003-FIX-remove-unneeded-include.patch b/recipes/multirnafold/0003-FIX-remove-unneeded-include.patch
new file mode 100644
index 0000000000000..51509cbcf874a
--- /dev/null
+++ b/recipes/multirnafold/0003-FIX-remove-unneeded-include.patch
@@ -0,0 +1,126 @@
+commit 625122c01dbf740131c2419a5d2bfd65d8d315d8
+Author: Marco Matthies <71844+marcom@users.noreply.github.com>
+Date:   Thu Feb 8 16:12:41 2024 +0100
+
+    Remove unneeded include of malloc.h
+
+diff --git a/src/multifold/m_energy_matrix.cpp b/src/multifold/m_energy_matrix.cpp
+index 4d47d90..4030513 100644
+--- a/src/multifold/m_energy_matrix.cpp
++++ b/src/multifold/m_energy_matrix.cpp
+@@ -18,7 +18,6 @@
+ #include <stdio.h>
+ #include <string.h>
+ #include <stdlib.h>
+-#include <malloc.h>
+ 
+ #include "constants.h"
+ #include "structs.h"
+diff --git a/src/multifold/m_multi_loop.cpp b/src/multifold/m_multi_loop.cpp
+index a017da8..382d57a 100644
+--- a/src/multifold/m_multi_loop.cpp
++++ b/src/multifold/m_multi_loop.cpp
+@@ -16,7 +16,6 @@
+  ***************************************************************************/
+ 
+ #include <stdio.h>
+-#include <malloc.h>
+ 
+ #include "externs.h"
+ #include "common.h"
+diff --git a/src/pairfold/p_energy_matrix.cpp b/src/pairfold/p_energy_matrix.cpp
+index 42c15c2..dc23e29 100644
+--- a/src/pairfold/p_energy_matrix.cpp
++++ b/src/pairfold/p_energy_matrix.cpp
+@@ -18,7 +18,6 @@
+ #include <stdio.h>
+ #include <string.h>
+ #include <stdlib.h>
+-#include <malloc.h>
+ 
+ #include "constants.h"
+ #include "structs.h"
+diff --git a/src/pairfold/p_multi_loop.cpp b/src/pairfold/p_multi_loop.cpp
+index f562ce0..267035a 100644
+--- a/src/pairfold/p_multi_loop.cpp
++++ b/src/pairfold/p_multi_loop.cpp
+@@ -16,7 +16,6 @@
+  ***************************************************************************/
+ 
+ #include <stdio.h>
+-#include <malloc.h>
+ 
+ #include "externs.h"
+ #include "common.h"
+diff --git a/src/pairfold/p_multi_loop_sub.cpp b/src/pairfold/p_multi_loop_sub.cpp
+index 467fb53..a418218 100644
+--- a/src/pairfold/p_multi_loop_sub.cpp
++++ b/src/pairfold/p_multi_loop_sub.cpp
+@@ -16,7 +16,6 @@
+  ***************************************************************************/
+ 
+ #include <stdio.h>
+-#include <malloc.h>
+ 
+ #include "externs.h"
+ #include "common.h"
+diff --git a/src/simfold/s_energy_matrix.cpp b/src/simfold/s_energy_matrix.cpp
+index cafc1d7..ce09162 100644
+--- a/src/simfold/s_energy_matrix.cpp
++++ b/src/simfold/s_energy_matrix.cpp
+@@ -20,7 +20,6 @@
+ #include <stdio.h>
+ #include <string.h>
+ #include <stdlib.h>
+-#include <malloc.h>
+ 
+ #include "constants.h"
+ #include "structs.h"
+diff --git a/src/simfold/s_multi_loop.cpp b/src/simfold/s_multi_loop.cpp
+index 6c5998a..de7991e 100644
+--- a/src/simfold/s_multi_loop.cpp
++++ b/src/simfold/s_multi_loop.cpp
+@@ -18,7 +18,6 @@
+ // The main class for multi-loop related functions, the mfe case 
+  
+ #include <stdio.h>
+-#include <malloc.h>
+ 
+ #include "externs.h"
+ #include "common.h"
+diff --git a/src/simfold/s_multi_loop_sub.cpp b/src/simfold/s_multi_loop_sub.cpp
+index e8f5219..bbdeb98 100644
+--- a/src/simfold/s_multi_loop_sub.cpp
++++ b/src/simfold/s_multi_loop_sub.cpp
+@@ -18,7 +18,6 @@
+ // this class represents multi-loops for suboptimal pairfold, it implements the Wuchty complete suboptimal paper 
+  
+ #include <stdio.h>
+-#include <malloc.h>
+ 
+ #include "externs.h"
+ #include "common.h"
+diff --git a/src/simfold/s_partition_function.cpp b/src/simfold/s_partition_function.cpp
+index c551b6d..c63e8b4 100644
+--- a/src/simfold/s_partition_function.cpp
++++ b/src/simfold/s_partition_function.cpp
+@@ -18,7 +18,6 @@
+ #include <stdio.h>
+ #include <string.h>
+ #include <stdlib.h>
+-#include <malloc.h>
+ #include <math.h>
+ #include <ctype.h>
+ 
+diff --git a/src/simfold/s_partition_function_complex.cpp b/src/simfold/s_partition_function_complex.cpp
+index 2654f25..2fb2a00 100644
+--- a/src/simfold/s_partition_function_complex.cpp
++++ b/src/simfold/s_partition_function_complex.cpp
+@@ -18,7 +18,6 @@
+ #include <stdio.h>
+ #include <string.h>
+ #include <stdlib.h>
+-#include <malloc.h>
+ #include <math.h>
+ #include <ctype.h>
+ 
diff --git a/recipes/multirnafold/build.sh b/recipes/multirnafold/build.sh
new file mode 100644
index 0000000000000..1a10377f73b68
--- /dev/null
+++ b/recipes/multirnafold/build.sh
@@ -0,0 +1,13 @@
+# build
+make CC="${CC}" CXX="${CXX}"
+
+# install
+mkdir -p "$PREFIX/bin"
+mkdir -p "$PREFIX/shared/${PKG_NAME}/params"
+mkdir -p "$PREFIX/include"
+mkdir -p "$PREFIX/lib"
+
+cp feature_description multifold pairfold pairfold-web simfold simfold_pf "$PREFIX/bin/"
+cp -r params/* "$PREFIX/shared/${PKG_NAME}/params/"
+cp -r include/* "$PREFIX/include/"
+cp libMultiRNAFold.a "$PREFIX/lib/"
diff --git a/recipes/multirnafold/meta.yaml b/recipes/multirnafold/meta.yaml
new file mode 100644
index 0000000000000..ad45a1c49cb85
--- /dev/null
+++ b/recipes/multirnafold/meta.yaml
@@ -0,0 +1,43 @@
+{% set name = "MultiRNAFold" %}
+{% set version = "2.1" %}
+{% set sha256 = "cb5462e03c70da24caaa9706f493fa329b1e15f697fbffd5bf460cd873243306" %}
+
+package:
+  name: {{ name | lower }}
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name | lower, max_pin="x.x") }}
+
+source:
+  url: http://www.rnasoft.ca/download/MultiRNAFold-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+  patches:
+    - 0001-FIX-Makefile.patch
+    - 0002-FIX-printf-missing-arg.patch
+    - 0003-FIX-remove-unneeded-include.patch
+
+requirements:
+  build:
+    - make
+    - {{ compiler('cxx') }}
+
+test:
+  commands:
+    - "test -x $PREFIX/bin/feature_description"
+    - "test -x $PREFIX/bin/multifold"
+    - "test -x $PREFIX/bin/pairfold"
+    - "test -x $PREFIX/bin/pairfold-web"
+    - "test -x $PREFIX/bin/simfold"
+    - "test -x $PREFIX/bin/simfold_pf"
+    - "pairfold -h"
+    - "simfold -h"
+    - "simfold_pf -h"
+    - "multifold -h"
+
+about:
+  home: http://www.rnasoft.ca/download/README.html
+  license: GPL-2.0-or-later
+  summary: 'RNA/DNA secondary structure prediction for one, two, or many interacting strands'
diff --git a/recipes/multivelo/meta.yaml b/recipes/multivelo/meta.yaml
index 6d9d54f3d56a5..d9c0d0d056145 100644
--- a/recipes/multivelo/meta.yaml
+++ b/recipes/multivelo/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "multivelo" %}
-{% set version = "0.1.2" %}
+{% set version = "0.1.3" %}
 
 package:
   name: {{ name|lower }}
@@ -7,11 +7,13 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/multivelo-{{ version }}.tar.gz
-  sha256: 974a26468cae4f1fd40093bef002fcbe0ef372f4d8f9e705d3053ec59ff598ac
+  sha256: 00b7df069baa8dd7bcae75c35960da1e6c6fc57b1dbc7008a0638ac76e8aba44
 
 build:
   noarch: python
   script: {{ PYTHON }} -m pip install . -vv
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
   number: 0
 
 requirements:
@@ -21,7 +23,7 @@ requirements:
   run:
     - anndata >=0.7.5
     - h5py >=2.10.0
-    - ipywidgets
+    - ipywidgets <=7.7.1
     - joblib
     - loompy >=2.0.12
     - matplotlib-base >=3.3.0
@@ -40,15 +42,12 @@ requirements:
 test:
   imports:
     - multivelo
-  commands:
-    - pip check
-  requires:
-    - pip
 
 about:
   home: https://github.com/welch-lab/MultiVelo
   summary: Multi-omic extension of single-cell RNA velocity
   license: BSD-3-Clause
+  license_family: BSD
   license_file: LICENSE
 
 extra:
diff --git a/recipes/mummer/meta.yaml b/recipes/mummer/meta.yaml
index 2083f64a19486..3d57b44f09bfa 100644
--- a/recipes/mummer/meta.yaml
+++ b/recipes/mummer/meta.yaml
@@ -13,8 +13,10 @@ source:
     - patches/gnuplot_mouse_clipboardformat.patch
 
 build:
-  number: 16
+  number: 17
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
 
 requirements:
   build:
@@ -48,5 +50,7 @@ about:
   summary: "MUMmer is a system for rapidly aligning entire genomes"
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:mummer
diff --git a/recipes/muscle/0001-Replace-zero-macro-with-memset_zero.patch b/recipes/muscle/0001-Replace-zero-macro-with-memset_zero.patch
deleted file mode 100644
index 95ba295a88c8d..0000000000000
--- a/recipes/muscle/0001-Replace-zero-macro-with-memset_zero.patch
+++ /dev/null
@@ -1,94 +0,0 @@
-From e2fc2cc23a2acbee4d9c7d0eeae289024432feec Mon Sep 17 00:00:00 2001
-From: Nicola Soranzo <nicola.soranzo@earlham.ac.uk>
-Date: Thu, 10 Feb 2022 01:31:21 +0000
-Subject: [PATCH 1/2] Replace `zero` macro with `memset_zero`
-
-The `zero` and `memset_zero` macros defined in `myutils.h` are the same, but
-`zero` interferes with LLVM's libcxx when compiling on macOS using Clang:
-
-In file included from addconfseq.cpp:1:
-In file included from ./muscle.h:23:
-In file included from ./multisequence.h:4:
-In file included from ./sequence.h:6:
-In file included from /usr/local/miniconda/envs/bioconda/conda-bld/muscle_1644453677064/_build_env/bin/../include/c++/v1/fstream:184:
-In file included from /usr/local/miniconda/envs/bioconda/conda-bld/muscle_1644453677064/_build_env/bin/../include/c++/v1/ostream:137:
-In file included from /usr/local/miniconda/envs/bioconda/conda-bld/muscle_1644453677064/_build_env/bin/../include/c++/v1/ios:215:
-In file included from /usr/local/miniconda/envs/bioconda/conda-bld/muscle_1644453677064/_build_env/bin/../include/c++/v1/__locale:18:
-In file included from /usr/local/miniconda/envs/bioconda/conda-bld/muscle_1644453677064/_build_env/bin/../include/c++/v1/mutex:190:
-/usr/local/miniconda/envs/bioconda/conda-bld/muscle_1644453677064/_build_env/bin/../include/c++/v1/__mutex_base:447:25: error: too few arguments provided to function-like macro invocation
-    if (__d <= __d.zero())
-                        ^
-./myutils.h:361:9: note: macro 'zero' defined here
-> #define zero(a, n)      memset((a), 0, (n)*sizeof(a[0]))
-          ^
-1 error generated.
-make: *** [Makefile:53: Darwin/addconfseq.o] Error 1
-
-This is the call to `zero` in libcxx:
-
-https://github.com/llvm/llvm-project/blob/b35be6fe98e30b2373e8fdf024ef8c13a32121d7/libcxx/include/__mutex_base#L444
-
-which is supposed to call:
-
-https://en.cppreference.com/w/cpp/chrono/duration/zero
----
- src/countsort.h  | 2 +-
- src/ensemble.cpp | 2 +-
- src/myutils.cpp  | 2 +-
- src/myutils.h    | 1 -
- 4 files changed, 3 insertions(+), 4 deletions(-)
-
-diff --git a/src/countsort.h b/src/countsort.h
-index 3f8d3f7..61b76e6 100644
---- a/src/countsort.h
-+++ b/src/countsort.h
-@@ -20,7 +20,7 @@ public:
- 	CountSortMem()
- 		{
- 		m_MaxValueCount = 0;
--		zero(m_Vecs, NVEC);
-+		memset_zero(m_Vecs, NVEC);
- 		}
- 
- 	void Free()
-diff --git a/src/ensemble.cpp b/src/ensemble.cpp
-index 7382db2..331f5f7 100644
---- a/src/ensemble.cpp
-+++ b/src/ensemble.cpp
-@@ -41,7 +41,7 @@ void Ensemble::SortMSA(MSA &M)
- 	M.GetLabelToSeqIndex(Labels2, LabelToSeqIndex2);
- 
- 	char **szSeqsSorted = myalloc(char *, SeqCount);
--	zero(szSeqsSorted, SeqCount);
-+	memset_zero(szSeqsSorted, SeqCount);
- 	for (uint SeqIndex = 0; SeqIndex < SeqCount; ++SeqIndex)
- 		{
- 		const string &Label = Labels2[SeqIndex];
-diff --git a/src/myutils.cpp b/src/myutils.cpp
-index 8eca591..9d7d53c 100644
---- a/src/myutils.cpp
-+++ b/src/myutils.cpp
-@@ -807,7 +807,7 @@ static char *GetThreadStr()
- 		{
- 		unsigned NewThreadStrCount = ThreadIndex + 4;
- 		char **NewThreadStrs = myalloc(char *, NewThreadStrCount);
--		zero(NewThreadStrs, NewThreadStrCount);
-+		memset_zero(NewThreadStrs, NewThreadStrCount);
- 		if (g_ThreadStrCount > 0)
- 			memcpy(NewThreadStrs, g_ThreadStrs, g_ThreadStrCount*sizeof(char *));
- 		g_ThreadStrs = NewThreadStrs;
-diff --git a/src/myutils.h b/src/myutils.h
-index d242607..49d28ef 100644
---- a/src/myutils.h
-+++ b/src/myutils.h
-@@ -358,7 +358,6 @@ inline bool feq(double x, double y)
- #define asserteq(x, y)	assert(feq(x, y))
- #define assertaeq(x, y)	asserta(feq(x, y))
- 
--#define	zero(a, n)	memset((a), 0, (n)*sizeof(a[0]))
- #define	memset_zero(a, n)	memset((a), 0, (n)*sizeof(a[0]))
- 
- void ResetRand(unsigned Seed);
--- 
-2.25.1
-
diff --git a/recipes/muscle/0002-Move-va_start-va_end-out-of-critical-section.patch b/recipes/muscle/0002-Move-va_start-va_end-out-of-critical-section.patch
deleted file mode 100644
index 5f9236c4b0234..0000000000000
--- a/recipes/muscle/0002-Move-va_start-va_end-out-of-critical-section.patch
+++ /dev/null
@@ -1,57 +0,0 @@
-From 02f38400c37f54d31b9be31aaa25ee11110cb5f6 Mon Sep 17 00:00:00 2001
-From: Nicola Soranzo <nicola.soranzo@earlham.ac.uk>
-Date: Thu, 10 Feb 2022 03:31:26 +0000
-Subject: [PATCH 2/2] Move va_start/va_end out of critical section
-
-Fix the following error when compiling with Clang++:
-
-```
-myutils.cpp:912:2: error: 'va_start' cannot be used in a captured statement
-        va_start(ArgList, Format);
-        ^
-1 error generated.
-make: *** [Makefile:53: Darwin/myutils.o] Error 1
-```
-
-Solution inspired by:
-
-https://github.com/Ultimaker/CuraEngine/pull/1124
----
- src/myutils.cpp | 6 +++---
- 1 file changed, 3 insertions(+), 3 deletions(-)
-
-diff --git a/src/myutils.cpp b/src/myutils.cpp
-index 9d7d53c..ccc4fa3 100644
---- a/src/myutils.cpp
-+++ b/src/myutils.cpp
-@@ -898,6 +898,8 @@ void Log(const char *Format, ...)
- 
- void Die_(const char *Format, ...)
- 	{
-+	va_list ArgList;
-+	va_start(ArgList, Format);
- #pragma omp critical
- 	{
- 	static bool InDie = false;
-@@ -908,10 +910,7 @@ void Die_(const char *Format, ...)
- 
- 	if (g_fLog != 0)
- 		setbuf(g_fLog, 0);
--	va_list ArgList;
--	va_start(ArgList, Format);
- 	myvstrprintf(Msg, Format, ArgList);
--	va_end(ArgList);
- 
- 	fprintf(stderr, "\n\n");
- 	Log("\n");
-@@ -944,6 +943,7 @@ void Die_(const char *Format, ...)
- 
- 	exit(1);
- 	}
-+	va_end(ArgList);
- 	}
- 
- void Warning_(const char *Format, ...)
--- 
-2.25.1
-
diff --git a/recipes/muscle/meta.yaml b/recipes/muscle/meta.yaml
index 6d0cee1af6e6d..16e21de4c8ff2 100644
--- a/recipes/muscle/meta.yaml
+++ b/recipes/muscle/meta.yaml
@@ -1,19 +1,21 @@
 {% set name = "muscle" %}
-{% set version = "5.1" %}
+{% set version = "5.1.0" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://github.com/rcedgar/muscle/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 091d9f8733b92ff106c2a8eb274d1e5a57960d397a2068d8638d6002e8880dab
+  url: https://github.com/rcedgar/muscle/archive/refs/tags/{{ version }}.tar.gz
+  sha256: 2bba8b06e3ccabf6465fa26f459763b2029d7e7b9596881063e3aaba60d9e87d
   patches:
-    - 0001-Replace-zero-macro-with-memset_zero.patch
-    - 0002-Move-va_start-va_end-out-of-critical-section.patch
+    - support-linux-aarch64.patch
 
 build:
-  number: 3
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
 
 requirements:
   build:
@@ -31,5 +33,7 @@ about:
   summary: "MUSCLE: multiple sequence alignment with high accuracy and high throughput"
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:muscle
diff --git a/recipes/muscle/support-linux-aarch64.patch b/recipes/muscle/support-linux-aarch64.patch
new file mode 100644
index 0000000000000..9308bf3333e2b
--- /dev/null
+++ b/recipes/muscle/support-linux-aarch64.patch
@@ -0,0 +1,13 @@
+diff --git i/src/myutils.h w/src/myutils.h
+index 49d28ef..8e8167e 100644
+--- i/src/myutils.h
++++ w/src/myutils.h
+@@ -11,7 +11,7 @@
+ #define TRACK_ALLOC		0
+ #define ALLOC_TOTALS	0
+ 
+-#if defined(__x86_64__) || defined(_M_X64) || defined(__arm64__)
++#if defined(__x86_64__) || defined(_M_X64) || defined(__arm64__) || defined(__aarch64__)
+ #define	BITS			64
+ #else
+ #define	BITS			32
diff --git a/recipes/mutmap/meta.yaml b/recipes/mutmap/meta.yaml
index 226d20c61d720..6405db4f798fc 100644
--- a/recipes/mutmap/meta.yaml
+++ b/recipes/mutmap/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "mutmap" %}
-{% set version = "2.3.3" %}
-{% set sha256 = "b92ed579df1318e041a96af6a9e6d02d932c74ac6f8f167a58820558f39254b5" %}
+{% set version = "2.3.4" %}
+{% set sha256 = "3e5dcb81bc91a28002e7e2c1eae3079dddcd93c50b98e25db64371b9b9325936" %}
 
 package:
   name: {{ name|lower }}
@@ -14,6 +14,8 @@ build:
   script: python -m pip install --no-deps --ignore-installed .
   noarch: python
   number: 0
+  run_exports:
+    - {{ pin_subpackage('mutmap', max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/mykrobe/meta.yaml b/recipes/mykrobe/meta.yaml
index 32a5e1859390e..e27a11f3614ac 100644
--- a/recipes/mykrobe/meta.yaml
+++ b/recipes/mykrobe/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.12.2" %}
+{% set version = "0.13.0" %}
 
 package:
   name: mykrobe
@@ -6,14 +6,15 @@ package:
 
 source:
   url: https://github.com/Mykrobe-tools/mykrobe/archive/v{{ version }}.tar.gz
-  sha256: eca612a226d5e50b4f177f5ee13b2e869d4af26b1ba7095157bcab3d9d3d7c88
+  sha256: 49662937378a4ff10ffcb3876efcc069be58f0dc183615e9cffb57f51348a45e
 
 build:
-  number: 1
+  number: 0
   skip: True  # [py<30]
   entry_points:
     - mykrobe = mykrobe.cli:main
-
+  run_exports:
+    - {{ pin_subpackage("mykrobe", max_pin="x.x") }}
 requirements:
   build:
     - make
diff --git a/recipes/mzmine/build.patch b/recipes/mzmine/build.patch
index dcfd2832aa3ff..81685331a8262 100644
--- a/recipes/mzmine/build.patch
+++ b/recipes/mzmine/build.patch
@@ -1,9 +1,9 @@
 # - without installerType set jpackage tries to create rpm and deb
 #   we don't need any of them, but I did not find a way to disable
 #   both. so we leave rpm which is available in conda (spkg isn't)
-diff -ruN mzmine3-3.6.0-org/build.gradle mzmine3-3.6.0/build.gradle
---- mzmine3-3.6.0-org/build.gradle	2023-06-21 14:39:23.000000000 +0200
-+++ mzmine3-3.6.0/build.gradle	2023-06-22 17:53:22.239977816 +0200
+diff -ruN mzmine3-3.9.0-org/build.gradle mzmine3-3.9.0/build.gradle
+--- mzmine3-3.9.0-org/build.gradle	2023-06-21 14:39:23.000000000 +0200
++++ mzmine3-3.9.0/build.gradle	2023-06-22 17:53:22.239977816 +0200
 @@ -392,7 +392,7 @@
          if (OperatingSystem.current().isLinux()) {
              // leave installer type empty to generate all that match
@@ -14,15 +14,15 @@ diff -ruN mzmine3-3.6.0-org/build.gradle mzmine3-3.6.0/build.gradle
              imageOptions = ["--icon", "src/main/resources/MZmineIcon.png"]
              installerOptions = ["--linux-shortcut",
 # version is set wrong https://github.com/mzmine/mzmine3/issues/1405
-diff -ruN mzmine3-3.6.0-org/src/main/resources/mzmineversion.properties mzmine3-3.6.0/src/main/resources/mzmineversion.properties
---- mzmine3-3.6.0-org/src/main/resources/mzmineversion.properties	2023-06-21 14:39:23.000000000 +0200
-+++ mzmine3-3.6.0/src/main/resources/mzmineversion.properties	2023-06-22 19:14:12.455764423 +0200
+diff -ruN mzmine3-3.9.0-org/src/main/resources/mzmineversion.properties mzmine3-3.9.0/src/main/resources/mzmineversion.properties
+--- mzmine3-3.9.0-org/src/main/resources/mzmineversion.properties	2023-06-21 14:39:23.000000000 +0200
++++ mzmine3-3.9.0/src/main/resources/mzmineversion.properties	2023-06-22 19:14:12.455764423 +0200
 @@ -3,6 +3,6 @@
  version.buildmeta=
  version.major=3
- version.minor=6
+ version.minor=9
 -version.patch=1
 +version.patch=0
  version.prerelease=
--version.semver=3.6.1
-+version.semver=3.6.0
+-version.semver=3.9.1
++version.semver=3.9.0
diff --git a/recipes/mzmine/meta.yaml b/recipes/mzmine/meta.yaml
index 74db59cb8c9e1..84b0ebd88566b 100644
--- a/recipes/mzmine/meta.yaml
+++ b/recipes/mzmine/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "3.6.0" %}
+{% set version = "3.9.0" %}
 
 package:
   name: mzmine
@@ -7,10 +7,12 @@ package:
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('mzmine', max_pin='x') }}
 
 source:
   - url: https://github.com/mzmine/mzmine3/archive/refs/tags/v{{ version }}.tar.gz
-    sha256: 0446c3e9c0fa777904fcb1354a57aaf611ef5718042930fd8c243c9245157ef2
+    sha256: ca0c206f63201e82d6e7e337c373449e69b4510dbd51adec8f13bed519e07257
     patches:
       - "build.patch"
 
diff --git a/recipes/naibr-plus/meta.yaml b/recipes/naibr-plus/meta.yaml
index b7f108f06edc7..4a5ea7975e838 100644
--- a/recipes/naibr-plus/meta.yaml
+++ b/recipes/naibr-plus/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "naibr-plus" %}
-{% set version = "0.5" %}
+{% set version = "0.5.3" %}
 
 package:
   name: "{{ name }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: https://github.com/pontushojer/NAIBR/releases/download/v{{ version }}/naibr-{{ version }}.tar.gz
-  sha256: 6736d5a3072ee4acd4c8937b05cdb9f09ee7e54c5cff752910cf3fd26097502b
+  sha256: 8f1829171ea1abd1e6c9625aa0e17b430401cbec859527a13197f693f8b42c95
 
 build:
   number: 0
   noarch: python
   script: {{ PYTHON }} -m pip install --no-deps .
+  run_exports:
+    - {{ pin_subpackage('naibr-plus', max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/nanocaller/meta.yaml b/recipes/nanocaller/meta.yaml
index b3b0cc2354e28..46a4efde3bf6e 100644
--- a/recipes/nanocaller/meta.yaml
+++ b/recipes/nanocaller/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "nanocaller" %}
-{% set version = "3.3.0" %}
+{% set version = "3.6.0" %}
 
 package:
   name: {{ name }}
@@ -7,11 +7,13 @@ package:
 
 source:
   url: https://github.com/WGLab/NanoCaller/archive/refs/tags/v{{ version }}.zip
-  sha256: 39e56551bbe38ec16a6544c760de277eb1314dec68066659ede523eef93e8ff3
+  sha256: 63acb2fd97bef760f9fd8a06021dd1a0865e6b9d22b461d3bd58acc4028d9c31
 
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('nanocaller', max_pin="x") }}
 
 requirements:
   run:
@@ -23,8 +25,8 @@ requirements:
     - tensorflow >=2.4
     - pysam
     - intervaltree
-    - muscle >=3.8, <4
-    - whatshap >=1.4
+    - muscle >=3.8,<4
+    - whatshap >=2.2
     - parasail-python
     - tqdm
     - rtg-tools
diff --git a/recipes/nanoget/build.sh b/recipes/nanoget/build.sh
deleted file mode 100644
index fa5e90cdd045a..0000000000000
--- a/recipes/nanoget/build.sh
+++ /dev/null
@@ -1,4 +0,0 @@
-#!/bin/bash
-
-$PYTHON setup.py install  --single-version-externally-managed --record=record.txt
-
diff --git a/recipes/nanoget/meta.yaml b/recipes/nanoget/meta.yaml
index 7b4bab0dbb88d..011ee073e9f0d 100644
--- a/recipes/nanoget/meta.yaml
+++ b/recipes/nanoget/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.19.1" %}
+{% set version = "1.19.3" %}
 
 package:
   name: nanoget
@@ -6,19 +6,22 @@ package:
 
 source:
   url: https://pypi.io/packages/source/n/nanoget/nanoget-{{ version }}.tar.gz
-  sha256: 14f4883a995503dbae757b55cb42fcb4430c58ce2201b79abd4e8e0e3d10ca18
+  sha256: da981810edb1cbe42cbbfbe5fcf753f29bf5555204cd51256b28a284a036a71b
 
 build:
   number: 0
   noarch: python
+  script: {{ PYTHON }} -m pip install . --no-deps -vvv
+  run_exports:
+    - {{ pin_subpackage('nanoget', max_pin="x") }}
 
 requirements:
   host:
-    - python >=3
-    - setuptools
+    - python >=3.0
+    - pip
   run:
-    - python >=3
-    - pandas >=0.22.0
+    - python >=3.0
+    - pandas >=2.0.0
     - numpy
     - biopython
     - pysam >0.10.0
diff --git a/recipes/nanoinsight/LICENSE.txt b/recipes/nanoinsight/LICENSE.txt
new file mode 100644
index 0000000000000..f288702d2fa16
--- /dev/null
+++ b/recipes/nanoinsight/LICENSE.txt
@@ -0,0 +1,674 @@
+                    GNU GENERAL PUBLIC LICENSE
+                       Version 3, 29 June 2007
+
+ Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/>
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+                            Preamble
+
+  The GNU General Public License is a free, copyleft license for
+software and other kinds of works.
+
+  The licenses for most software and other practical works are designed
+to take away your freedom to share and change the works.  By contrast,
+the GNU General Public License is intended to guarantee your freedom to
+share and change all versions of a program--to make sure it remains free
+software for all its users.  We, the Free Software Foundation, use the
+GNU General Public License for most of our software; it applies also to
+any other work released this way by its authors.  You can apply it to
+your programs, too.
+
+  When we speak of free software, we are referring to freedom, not
+price.  Our General Public Licenses are designed to make sure that you
+have the freedom to distribute copies of free software (and charge for
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+
+                     END OF TERMS AND CONDITIONS
+
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+
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+may consider it more useful to permit linking proprietary applications with
+the library.  If this is what you want to do, use the GNU Lesser General
+Public License instead of this License.  But first, please read
+<https://www.gnu.org/licenses/why-not-lgpl.html>.
diff --git a/recipes/nanoinsight/meta.yaml b/recipes/nanoinsight/meta.yaml
new file mode 100644
index 0000000000000..881ab16d68a82
--- /dev/null
+++ b/recipes/nanoinsight/meta.yaml
@@ -0,0 +1,44 @@
+{% set name = "nanoinsight" %}
+{% set version = "0.0.3" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/nanoinsight-{{ version }}.tar.gz
+  sha256: a0ca0076fc6cbf11f6460d48ba3a07a97fea01f77282e70da2e992df97afc3c9
+
+build:
+  entry_points:
+    - nanoinsight=nanoinsight.nanoinsight:main
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('nanoinsight', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.8
+    - pip
+  run:
+    - python >=3.8
+    - biopython >=1.82
+    - scikit-allel >=1.3.7
+    - pandas >=1.5.3
+    - mafft
+    - repeatmasker
+
+test:
+  imports:
+    - nanoinsight
+  commands:
+    - nanoinsight --help
+
+about:
+  home: https://github.com/AsmaaSamyMohamedMahmoud/nanoinsight
+  summary: Repeat annotation tool for insertions called by NanoVar
+  license: GPL-3.0-or-later
+  license_file: LICENSE.txt
+
diff --git a/recipes/nanometa-live/meta.yaml b/recipes/nanometa-live/meta.yaml
index 9cba69039c9b2..4ccbcf3cfba8b 100644
--- a/recipes/nanometa-live/meta.yaml
+++ b/recipes/nanometa-live/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "nanometa-live" %}
-{% set version = "0.1.1" %}
+{% set version = "0.4.3" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,26 +7,28 @@ package:
 
 source:
   url: https://github.com/FOI-Bioinformatics/nanometa_live/archive/{{ version }}.tar.gz
-  sha256: 59ace88e5f38531ac31137642478c5dee12f0f84b25579f5c34b009e9566e8ee
+  sha256: 9c8e0cb9eddaf8cfde3a752424717447319afd2af357a815e0ba4d4112e58e5c
 
 build:
   number: 0
   entry_points:
-    - nanometa-sim=nanometa_live.nanopore_simulator:nano_sim
-    - nanometa-new=nanometa_live.create_new_project:create_new
-    - nanometa-blastdb=nanometa_live.build_blast_db:build_blast
-    - nanometa-pipe=nanometa_live.nanometa_backend:check_help
-    - nanometa = nanometa_live.nanometa_gui:run_app
-  script: python -m pip install --no-deps --ignore-installed . 
+    - nanometa-sim = nanometa_live.nanopore_simulator:nano_sim
+    - nanometa-new = nanometa_live.nanometa_new:main
+    - nanometa-backend = nanometa_live.nanometa_backend:main
+    - nanometa-gui = nanometa_live.nanometa_gui:run_app
+    - nanometa-live = nanometa_live.nanometa_runner:main
+    - nanometa-prepare = nanometa_live.nanometa_prepare:main
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation . -vvv
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('nanometa-live', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - python >3
-
+    - python >=3.9
   run:
-    - python >3
+    - python >=3.9
     - dash >=2.8.1
     - dash-daq >=0.5.0
     - dash-bootstrap-components >=1.3.1
@@ -34,19 +36,30 @@ requirements:
     - numpy >=1.24.1
     - pandas >=1.5.3
     - pyyaml >=6.0
-    - snakemake >=7.20.0
+    - pytest >=7.2.1
+    - snakemake-minimal >=7.20.0
     - blast >=2.13.0
+    - biopython >=1.80
+    - gzip >=1.10
+    - kraken2 >=2.1.2
+    - fastp >=0.23.2
+    - ruamel.yaml >=0.17.32
+    - ncbi-datasets-cli >=15.20.0
+    - tqdm >=4.62.3
+
 test:
   commands:
-    - nanometa --help
+    - nanometa-live --help
     - nanometa-sim --help
     - nanometa-new --help
-    - nanometa-blastdb --help
-    - nanometa-pipe --help
+    - nanometa-prepare --help
+    - nanometa-gui --help
+    - nanometa-backend --help
 
 about:
   home: https://github.com/FOI-Bioinformatics/nanometa_live
   license: GPL-3.0-or-later
   license_family: GPL3
   license_file: LICENSE.txt
-  summary: Workflow and GUI for real-time species classification and pathogen characterization of nanopore sequence reads.
+  summary: 'Workflow and GUI for real-time species classification and pathogen characterization of nanopore sequence reads.'
+  doc_url: https://github.com/FOI-Bioinformatics/nanometa_live/wiki
diff --git a/recipes/nanomotif/meta.yaml b/recipes/nanomotif/meta.yaml
new file mode 100644
index 0000000000000..6da9281bf29e8
--- /dev/null
+++ b/recipes/nanomotif/meta.yaml
@@ -0,0 +1,57 @@
+{% set name = "nanomotif" %}
+{% set version = "0.4.5" %}
+
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/nanomotif-{{ version }}.tar.gz
+  sha256: 703581634d629722f782d5ede79fe215e3e3468f49ea8801cb5787a586785c7a
+
+build:
+  entry_points:
+    - nanomotif = nanomotif.main:main
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('nanomotif', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python
+    - pip
+  run:
+    - python
+    - wheel
+    - requests
+    - numpy >=1.24.4
+    - pandas >=2.0.2
+    - polars >=0.19
+    - seaborn >=0.12.2
+    - scipy >=1.10.1
+    - networkx >=3.1
+    - progressbar2 >=3.53.1
+    - biopython >=1.6.2
+    - pyarrow >=15.0.2
+    - snakemake >=7.32.4
+
+
+test:
+  imports:
+    - nanomotif
+  commands:
+    - nanomotif --help
+
+about:
+  home: https://pypi.org/project/nanomotif/
+  summary: Identifying methlyation motifs in nanopore data
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - SorenHeidelbach
diff --git a/recipes/nanoplot/meta.yaml b/recipes/nanoplot/meta.yaml
index ca2e5abb6cf6d..b40260be1a127 100644
--- a/recipes/nanoplot/meta.yaml
+++ b/recipes/nanoplot/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.41.6" %}
+{% set version = "1.42.0" %}
 
 package:
   name: nanoplot
@@ -6,14 +6,15 @@ package:
 
 source:
   url: https://pypi.io/packages/source/n/nanoplot/NanoPlot-{{ version }}.tar.gz
-  sha256: 94157f2d96c4849f5753fc7cc1a7c51e7cc74c20016e46bdd2f7b36d519291b7
+  sha256: 0f8fd2cffd33a346b3306716058c6cb4091c931e8ab502f10b17a28749e8b6d9
 
 build:
   entry_points:
     - NanoPlot=nanoplot.NanoPlot:main
   number: 0
   noarch: python
-
+  run_exports:
+    - {{ pin_subpackage("nanoplot", max_pin="x.x") }}
 requirements:
   host:
     - python >=3
diff --git a/recipes/nanovar/meta.yaml b/recipes/nanovar/meta.yaml
index 1291436fb6287..9d412711b5581 100644
--- a/recipes/nanovar/meta.yaml
+++ b/recipes/nanovar/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.4.1" %}
+{% set version = "1.5.1" %}
 
 package:
   name: nanovar
@@ -6,12 +6,14 @@ package:
 
 source:
   url: https://pypi.io/packages/source/n/nanovar/nanovar-{{ version }}.tar.gz
-  sha256: 7a63a40a0ec5eaf8759e6a4a00f65b3779fc9e94a923375915741a64dfcc0cf2
+  sha256: 5b189ff18958be0e7406752f7700e0c70d464ae64b70ed278fd32a2fe61280a4
 
 build:
   skip: True  # [py2k or osx or py > 39]
-  number: 2
+  number: 0
   script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
+  run_exports:
+    - {{ pin_subpackage('nanovar', max_pin="x") }}    
 
 requirements:
   build:
@@ -30,12 +32,9 @@ requirements:
     - scipy >=1.2.1
     - tensorflow-mkl >=2.0.0
     - bedtools >=2.26.0
-    - blast >=2.5.0
-    - hs-blastn >=0.0.5
     - minimap2 >=2.17
     - samtools >=1.3
     - pysam >=0.15.3
-    - cytocad >=1.0.3
 
 test:
   imports:
diff --git a/recipes/narfmap/build.sh b/recipes/narfmap/build.sh
new file mode 100644
index 0000000000000..a61afaac5bc31
--- /dev/null
+++ b/recipes/narfmap/build.sh
@@ -0,0 +1,8 @@
+export HAS_GTEST=0
+
+# fix build number in config
+sed -i.bak 's/VERSION_STRING.*/VERSION_STRING="${PKG_VERSION}"/' config.mk
+
+make CXX=$CXX CC=$CC CXXFLAGS="$CXXFLAGS" CFLAGS="$CFLAGS"
+mkdir -p "${PREFIX}/bin"
+mv build/release/dragen-os ${PREFIX}/bin/
diff --git a/recipes/narfmap/meta.yaml b/recipes/narfmap/meta.yaml
new file mode 100644
index 0000000000000..97b860bfd5c12
--- /dev/null
+++ b/recipes/narfmap/meta.yaml
@@ -0,0 +1,41 @@
+{% set name = "narfmap" %}
+{% set version = "1.4.0" %}
+{% set sha256 = "86dc55dcad1fd83b6d486ec18aa5e212412e65546ce8c9e59134c827128aff71" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/Emiller88/NARFMAP/archive/refs/tags/{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage("narfmap", max_pin="x") }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+  host:
+    - zlib
+    - boost
+    - boost-cpp
+  run:
+    - zlib
+    - boost
+    - boost-cpp
+
+test:
+  commands:
+    - dragen-os -h
+
+about:
+  home: https://github.com/Emiller88/NARFMAP
+  license: GPL-3
+  licence_file: COPYRIGHT
+  summary: "NARFMAP is a fork of the Dragen mapper/aligner Open Source Software."
diff --git a/recipes/ncbi-amrfinderplus/meta.yaml b/recipes/ncbi-amrfinderplus/meta.yaml
index 06e7ce3403230..1e8066c9c665a 100644
--- a/recipes/ncbi-amrfinderplus/meta.yaml
+++ b/recipes/ncbi-amrfinderplus/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "3.11.17" %}
-{% set sha256 = "15fadfbb10b4c0b5a78240c8a481b43fec72395746835970d73d4c61c0f4732a" %}
+{% set version = "3.12.8" %}
+{% set sha256 = "a199bc332877bad9033a7620bc5e8e849db1f19a9ba8b7357ec5451a6a283aa0" %}
 
 package:
   name: ncbi-amrfinderplus
@@ -11,6 +11,8 @@ source:
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage('ncbi-amrfinderplus', max_pin="x") }}
 
 requirements:
   build:
@@ -41,7 +43,7 @@ test:
          -O https://raw.githubusercontent.com/ncbi/amr/master/test_prot.fa \
          -O https://raw.githubusercontent.com/ncbi/amr/master/test_prot.gff \
          -O https://raw.githubusercontent.com/ncbi/amr/master/test_both.expected
-        amrfinder --plus -n test_dna.fa -p test_prot.fa -g test_prot.gff -O Escherichia > test_both.got
+        amrfinder --plus -n test_dna.fa -p test_prot.fa -g test_prot.gff -O Escherichia --print_node > test_both.got
         diff test_both.expected test_both.got
 
 about:
@@ -60,4 +62,5 @@ about:
 extra:
   recipe-maintainers:
     - evolarjun
-
+  identifiers:
+    - doi:10.1038/s41598-021-91456-0
diff --git a/recipes/ncbi-datasets-pylib/meta.yaml b/recipes/ncbi-datasets-pylib/meta.yaml
index 17b74a1d99098..9c5c206587b6f 100644
--- a/recipes/ncbi-datasets-pylib/meta.yaml
+++ b/recipes/ncbi-datasets-pylib/meta.yaml
@@ -1,5 +1,6 @@
 {% set name = "ncbi-datasets-pylib" %}
-{% set version = "14.27.0" %}
+{% set version = "16.6.1" %}
+{% set sha256 = "06ab4409a00ac4c89465dea774558f8e51bc759f869072332399e5dcca0dded8" %}
 
 package:
   name: {{ name|lower }}
@@ -7,35 +8,32 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/ncbi-datasets-pylib-{{ version }}.tar.gz
-  sha256: 6d17465b56eb6679fab92b221c099b7f4a31c4e40c8710ef2bda39380c2363ba
+  sha256: {{ sha256 }}
 
 build:
-  noarch: python
-  script: {{ PYTHON }} -m pip install . -vv
   number: 0
+  noarch: python
+  script: {{ PYTHON }} -m pip install . --use-pep517 --no-deps -vvv
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   host:
     - python >=3.8
-    - python-packit
     - pip
+    - python-packit
   run:
+    - python >=3.8
     - gffutils ==0.10.*
     - jinja2 ==3.1.*
     - jsonlines ==3.0.*
     - protobuf ==3.20.*
     - python-dateutil ==2.8.*
-    - setuptools >=21.0.0
     - urllib3 ==1.26.*
-    - python >=3.8
 
 test:
   imports:
     - ncbi
-  commands:
-    - pip check
-  requires:
-    - pip
 
 about:
   home: https://www.ncbi.nlm.nih.gov/datasets
@@ -48,4 +46,3 @@ about:
 extra:
   recipe-maintainers:
     - misialq
-    - corneliusroemer
diff --git a/recipes/ncbi-fcs-gx/0.4.1/aria_split_16.patch b/recipes/ncbi-fcs-gx/0.4.1/aria_split_16.patch
new file mode 100755
index 0000000000000..dbc30ef59b262
--- /dev/null
+++ b/recipes/ncbi-fcs-gx/0.4.1/aria_split_16.patch
@@ -0,0 +1,26 @@
+diff --git a/scripts/sync_files.py b/scripts/sync_files.py
+index 3c404d37..2d87a87e 100755
+--- a/scripts/sync_files.py
++++ b/scripts/sync_files.py
+@@ -360,16 +360,18 @@ def check_space(mft, dir):
+ def download_file_with_aria(url, file_path):
+ 
+     aria_config = file_path.with_suffix(".aria2_config")
++    num_connections = 4 if "ncbi.nlm.nih.gov" in url else 16
++
+     with open(aria_config, "w", encoding="ascii") as f:
+-        f.write("""
++        f.write(f"""
+             file-allocation=none
+             check-certificate=false
+             allow-overwrite=true
+             auto-file-renaming=false
+             max-tries=5
+-            max-connection-per-server=5
+-            max-concurrent-downloads=5
+-            split=5
++            max-concurrent-downloads=2
++            max-connection-per-server={num_connections}
++            split={num_connections}
+             console-log-level=warn
+         """)
diff --git a/recipes/ncbi-fcs-gx/0.4.1/build.sh b/recipes/ncbi-fcs-gx/0.4.1/build.sh
new file mode 100644
index 0000000000000..1597a84f75f1d
--- /dev/null
+++ b/recipes/ncbi-fcs-gx/0.4.1/build.sh
@@ -0,0 +1,18 @@
+#!/bin/bash -e
+set -uex
+
+mkdir -vp ${PREFIX}/bin
+
+ls -l .
+
+$GCC --version
+$GCC -print-search-dirs 
+
+#cd fcs-gx-0.4.0
+make VERBOSE=1 
+
+cp $SRC_DIR/build/src/gx    ${PREFIX}/bin/
+cp $SRC_DIR/scripts/*      ${PREFIX}/bin/
+cp $SRC_DIR/make_gxdb/blast_names_mapping.tsv ${PREFIX}/bin/ 
+chmod ua+x ${PREFIX}/bin/gx
+
diff --git a/recipes/ncbi-fcs-gx/0.4.1/meta.yaml b/recipes/ncbi-fcs-gx/0.4.1/meta.yaml
new file mode 100644
index 0000000000000..b4503a798fb23
--- /dev/null
+++ b/recipes/ncbi-fcs-gx/0.4.1/meta.yaml
@@ -0,0 +1,41 @@
+package:
+  name: ncbi-fcs-gx
+  version: 0.4.1
+
+source:
+  url: https://github.com/ncbi/fcs-gx/archive/refs/tags/v0.4.1.zip
+  sha256: 7bedb6a43945df4821d3e23fd1c5c4bf117cd70001cb96b310d177f0fd049a6b
+  patches:
+    - aria_split_16.patch
+
+requirements:
+  build:
+    - {{ compiler('cxx') }}
+    - make
+    - cmake
+    - libstdcxx-ng
+    - libgcc-ng
+  run:
+    - python >=3.9
+    - aria2 =1.36.0
+    - gzip >=1.5
+    - pv >=1.4.6
+    - rclone =1.61.1
+    - grep >=3.4
+
+build:
+  number: 1
+  skip: True  # [not linux or not x86_64]
+  run_exports:
+    - {{ pin_compatible('nxbi-fcs-gx', max_pin="x.x") }}
+
+test:
+  commands:
+    - gx --help 
+
+about:
+  home: https://github.com/ncbi/fcs
+  summary: The NCBI Foreign Contamination Screen. Genomic cross-species aligner, for contamination detection.
+  license: NCBI-PD
+  license_url: https://github.com/ncbi/fcs/blob/main/LICENSE.txt
+
diff --git a/recipes/ncbi-fcs-gx/aria_split_16.patch b/recipes/ncbi-fcs-gx/aria_split_16.patch
new file mode 100755
index 0000000000000..dbc30ef59b262
--- /dev/null
+++ b/recipes/ncbi-fcs-gx/aria_split_16.patch
@@ -0,0 +1,26 @@
+diff --git a/scripts/sync_files.py b/scripts/sync_files.py
+index 3c404d37..2d87a87e 100755
+--- a/scripts/sync_files.py
++++ b/scripts/sync_files.py
+@@ -360,16 +360,18 @@ def check_space(mft, dir):
+ def download_file_with_aria(url, file_path):
+ 
+     aria_config = file_path.with_suffix(".aria2_config")
++    num_connections = 4 if "ncbi.nlm.nih.gov" in url else 16
++
+     with open(aria_config, "w", encoding="ascii") as f:
+-        f.write("""
++        f.write(f"""
+             file-allocation=none
+             check-certificate=false
+             allow-overwrite=true
+             auto-file-renaming=false
+             max-tries=5
+-            max-connection-per-server=5
+-            max-concurrent-downloads=5
+-            split=5
++            max-concurrent-downloads=2
++            max-connection-per-server={num_connections}
++            split={num_connections}
+             console-log-level=warn
+         """)
diff --git a/recipes/ncbi-fcs-gx/build.sh b/recipes/ncbi-fcs-gx/build.sh
index 6a8261ab3e996..115d28fa7d971 100644
--- a/recipes/ncbi-fcs-gx/build.sh
+++ b/recipes/ncbi-fcs-gx/build.sh
@@ -3,22 +3,17 @@ set -uex
 
 mkdir -vp ${PREFIX}/bin
 
-# file is already present and unzipped
-# URL='https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/FCS/releases/0.4.0/gx_conda_0.4.0.zip'
-# curl -o gx_conda_0.4.0.zip ${URL}
-# unzip  -u  -o gx_conda_0.4.0.zip
-# rm gx_conda_0.4.0.zip
+ls -l .
 
-chmod ua+x ./gx
-mv ./gx ${PREFIX}/bin/
-mv ./blast_names_mapping.tsv ${PREFIX}/bin/
-mv ./db_exclude.locs.tsv  ${PREFIX}/bin/
-mv ./classify_taxonomy.py ${PREFIX}/bin/
-mv ./action_report.py     ${PREFIX}/bin/
-mv ./run_gx.py            ${PREFIX}/bin/
-mv ./sync_files.py        ${PREFIX}/bin/
+$GCC --version
+$GCC -print-search-dirs 
 
-# not installing the docker runners
-# chmod ua+x ${PREFIX}/bin/run_fcsgx.py
-# chmod ua+x ${PREFIX}/bin/run_fcsadaptor.sh
+#cd fcs-gx-0.4.0
+make VERBOSE=1 
+
+cp $SRC_DIR/build/src/gx    ${PREFIX}/bin/
+cp $SRC_DIR/scripts/*      ${PREFIX}/bin/
+cp $SRC_DIR/make_gxdb/blast_names_mapping.tsv ${PREFIX}/bin/ 
+echo PREFIX: ${PREFIX}
+chmod ua+x ${PREFIX}/bin/gx
 
diff --git a/recipes/ncbi-fcs-gx/meta.yaml b/recipes/ncbi-fcs-gx/meta.yaml
index a8fd9b25f834e..e1f67d2619dea 100644
--- a/recipes/ncbi-fcs-gx/meta.yaml
+++ b/recipes/ncbi-fcs-gx/meta.yaml
@@ -1,24 +1,41 @@
 package:
   name: ncbi-fcs-gx
-  version: 0.4.0
+  version: 0.5.0
 
 source:
-  url: https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/FCS/releases/0.4.0/gx_conda_0.4.0.zip
-  sha256: 35a93f3d86b82a1657cf926e36dc0821d8048b6a83542b72eacd60bfc363f278
+  url: https://github.com/ncbi/fcs-gx/archive/refs/tags/v0.5.0.zip
+  sha256: 2f6b6099584495e1a9115403a5e4cb5f5dac1ddbbc691da9a3158a75391ffe8a
+  patches:
+    - aria_split_16.patch
+    - no_static.patch
+
 
 requirements:
   build:
     - {{ compiler('cxx') }}
+    - make
+    - cmake
+    - libstdcxx-ng <=12.2
+    - libgcc-ng <=12.2
   run:
     - python >=3.9
+    - aria2 =1.36.0
+    - gzip >=1.5
+    - pv >=1.4.6
+    - rclone =1.61.1
+    - grep >=3.4
 
 build:
-  number: 2
+  number: 3
   skip: True  # [not linux or not x86_64]
+  run_exports:
+    - {{ pin_compatible('ncbi-fcs-gx', max_pin="0.5") }}
 
 test:
   commands:
     - gx --help 
+    - ls -l ${PREFIX}/bin/
+    - ${PREFIX}/bin/gx --help 
 
 about:
   home: https://github.com/ncbi/fcs
diff --git a/recipes/ncbi-fcs-gx/no_static.patch b/recipes/ncbi-fcs-gx/no_static.patch
new file mode 100644
index 0000000000000..8d8e22f22579e
--- /dev/null
+++ b/recipes/ncbi-fcs-gx/no_static.patch
@@ -0,0 +1,10 @@
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -5,6 +5,6 @@
+ set(gx_VERSION_MINOR 0)
+ 
+ set(CMAKE_CXX_FLAGS_DEBUG   "${CMAKE_CXX_FLAGS} -O0 -ggdb3 -DDEBUG")
+-set(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS} -static -O2 -DNDEBUG")  # TODO: investigate whether can/should enable -march=x86-64-v4
++set(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS} -O2 -DNDEBUG")  # TODO: investigate whether can/should enable -march=x86-64-v4
+ 
+ add_subdirectory(src)
diff --git a/recipes/ncbi-ngs-sdk/meta.yaml b/recipes/ncbi-ngs-sdk/meta.yaml
index 549f2efd81420..09d85595c29bf 100644
--- a/recipes/ncbi-ngs-sdk/meta.yaml
+++ b/recipes/ncbi-ngs-sdk/meta.yaml
@@ -6,7 +6,9 @@ package:
   version: {{ version }}
 
 build:
-  number: 2
+  number: 3
+  run_exports:
+    - {{ pin_subpackage('ncbi-ngs-sdk', max_pin="x") }}
 
 source:
   url: https://github.com/ncbi/ngs/archive/{{ version }}.tar.gz
@@ -33,3 +35,7 @@ about:
   home: https://github.com/ncbi/ngs
   license: Public Domain
   summary: NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing.
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/ncbi-vdb-py/meta.yaml b/recipes/ncbi-vdb-py/meta.yaml
index 197d8aba347db..e354335cbef45 100644
--- a/recipes/ncbi-vdb-py/meta.yaml
+++ b/recipes/ncbi-vdb-py/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "3.0.6" %}
-{% set sha256 = "4b6f93336bf8664fdcc151d41ea0793f0b0f88cfcb7c2aa049f162a72f905223" %}
+{% set version = "3.1.1" %}
+{% set sha256 = "e9766f259853c696be48e289b08cb5ae6e198d82d7ffee79f09ce7f720487991" %}
 
 package:
   name: ncbi-vdb-py
@@ -14,6 +14,8 @@ source:
 build:
   number: 0
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('ncbi-vdb-py', max_pin='x') }}
   script: |
     PYVER=`python -c 'import sys; print(str(sys.version_info[0])+"."+str(sys.version_info[1]))'`
     mkdir -p ${PREFIX}/lib/python${PYVER}/site-packages/
diff --git a/recipes/ncbi-vdb/build.sh b/recipes/ncbi-vdb/build.sh
index d8b63767c0d42..9b73fbb271b0e 100644
--- a/recipes/ncbi-vdb/build.sh
+++ b/recipes/ncbi-vdb/build.sh
@@ -24,13 +24,18 @@ end-of-patch
 
 # Execute Make commands from a separate subdirectory. Else:
 # ERROR: In source builds are not allowed
-BUILD_DIR=./build_vdb
-mkdir ${BUILD_DIR}
-cd ${BUILD_DIR}
+#BUILD_DIR="${SRC_DIR}/build_vdb"
+#mkdir -p "${BUILD_DIR}"
+#cd "${BUILD_DIR}"
 
-export CFLAGS="${CFLAGS} -DH5_USE_110_API"
-cmake ../ncbi-vdb/ -DNGS_INCDIR=${PREFIX} \
-         -DCMAKE_INSTALL_PREFIX=${PREFIX} \
-         -DCMAKE_BUILD_TYPE=Release
-cmake --build .
-cmake --install .
+export CXXFLAGS="${CXXFLAGS} -I${PREFIX}/include -O3 -D_FILE_OFFSET_BITS=64 -DH5_USE_110_API"
+
+cmake -S ncbi-vdb/ -B build_vdb \
+	-DNGS_INCDIR="${PREFIX}" \
+	-DCMAKE_INSTALL_PREFIX="${PREFIX}" \
+	-DCMAKE_BUILD_TYPE=Release \
+	-DCMAKE_CXX_COMPILER="${CXX}" \
+	-DCMAKE_CXX_FLAGS="${CXXFLAGS}" \
+	-DCMAKE_LIBRARY_PATH="${PREFIX}/lib"
+
+cmake --build build_vdb/ --target install -j 4 -v
diff --git a/recipes/ncbi-vdb/env.cmake.patch b/recipes/ncbi-vdb/env.cmake.patch
new file mode 100644
index 0000000000000..b8d1ba37da297
--- /dev/null
+++ b/recipes/ncbi-vdb/env.cmake.patch
@@ -0,0 +1,25 @@
+diff --git a/build/env.cmake b/build/env.cmake
+index 5fe6f2f..45eb0e8 100644
+--- a/build/env.cmake
++++ b/build/env.cmake
+@@ -117,12 +117,17 @@ endif ()
+ if( "bsd" STREQUAL ${OS} )
+     add_compile_definitions( BSD UNIX )
+     set( LMCHECK "" )
+-elseif ( "mac" STREQUAL ${OS} )
+-    add_compile_definitions( MAC BSD UNIX )
++endif()
++if ( CMAKE_C_COMPILER_ID STREQUAL "AppleClang" )
+     set(CMAKE_C_ARCHIVE_CREATE   "<CMAKE_AR> Scr <TARGET> <LINK_FLAGS> <OBJECTS>")
+-    set(CMAKE_CXX_ARCHIVE_CREATE "<CMAKE_AR> Scr <TARGET> <LINK_FLAGS> <OBJECTS>")
+     set(CMAKE_C_ARCHIVE_FINISH   "<CMAKE_RANLIB> -no_warning_for_no_symbols -c <TARGET>")
++endif()
++if ( CMAKE_CXX_COMPILER_ID STREQUAL "AppleClang" )
++    set(CMAKE_CXX_ARCHIVE_CREATE "<CMAKE_AR> Scr <TARGET> <LINK_FLAGS> <OBJECTS>")
+     set(CMAKE_CXX_ARCHIVE_FINISH "<CMAKE_RANLIB> -no_warning_for_no_symbols -c <TARGET>")
++endif()
++if ( "mac" STREQUAL ${OS} )
++    add_compile_definitions( MAC BSD UNIX )
+ elseif( "linux" STREQUAL ${OS} )
+     add_compile_definitions( LINUX UNIX )
+     set( LMCHECK -lmcheck )
diff --git a/recipes/ncbi-vdb/meta.yaml b/recipes/ncbi-vdb/meta.yaml
index 2652c7376a677..dbbff72dea518 100644
--- a/recipes/ncbi-vdb/meta.yaml
+++ b/recipes/ncbi-vdb/meta.yaml
@@ -1,33 +1,29 @@
-{% set version = "3.0.6" %}
+{% set name = "ncbi-vdb" %}
+{% set version = "3.1.1" %}
 
 package:
-  name: ncbi-vdb
+  name: {{ name }}
   version: {{ version }}
 
 build:
   number: 0
-  skip: True # [osx]
+  run_exports:
+    - {{ pin_subpackage('ncbi-vdb', max_pin='x') }}
 
 source:
-  - url: https://github.com/ncbi/ncbi-vdb/archive/{{ version }}.tar.gz
-    sha256: 4b6f93336bf8664fdcc151d41ea0793f0b0f88cfcb7c2aa049f162a72f905223
-    folder: ncbi-vdb
+  url: https://github.com/ncbi/ncbi-vdb/archive/{{ version }}.tar.gz
+  sha256: e9766f259853c696be48e289b08cb5ae6e198d82d7ffee79f09ce7f720487991
+  folder: ncbi-vdb
+  patches:
+    - env.cmake.patch  # [osx]
 
-requirements:    
+requirements:
   build:
-    - {{ compiler('c') }}
     - {{ compiler('cxx') }}
     - bison
     - cmake
     - flex
     - make
-  run:
-    - ca-certificates
-    - curl
-    - ossuuid
-    - perl
-    - perl-xml-libxml
-    - perl-uri
 
 about:
   home: https://github.com/ncbi/ncbi-vdb
@@ -36,9 +32,14 @@ about:
   description: |
     VDB is the database engine that all SRA tools use. It is a columnar database
     system with a number of unique features. All SRA objects are stored in VDB.
+  dev_url: https://github.com/ncbi/ncbi-vdb
+  doc_url: https://github.com/ncbi/ncbi-vdb/wiki
 
 test:
   commands:
-    - test -e ${PREFIX}/lib64/libncbi-vdb.so # [not osx]
-    - test -e ${PREFIX}/lib64/libncbi-vdb.dylib # [osx]
+    - test -e ${PREFIX}/lib64/libncbi-vdb.so  # [not osx]
+    - test -e ${PREFIX}/lib64/libncbi-vdb.dylib  # [osx]
 
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/ncls/meta.yaml b/recipes/ncls/meta.yaml
index f593d34f8522e..44dbe4ad16faa 100644
--- a/recipes/ncls/meta.yaml
+++ b/recipes/ncls/meta.yaml
@@ -10,9 +10,11 @@ source:
   sha256: 81aaa5abb123bb21797ed2f8ef921e20222db14a3ecbc61ccf447532f2b7ba93
 
 build:
-  number: 1
+  number: 2
   skip: true  # [py2k or osx]
   script: {{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x.x") }}
 
 requirements:
   build:
@@ -37,6 +39,8 @@ about:
   summary: Fast overlap datastructure.
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   recipe-maintainers:
     - endrebak
   skip-lints:
diff --git a/recipes/nda-tools/meta.yaml b/recipes/nda-tools/meta.yaml
index 2aac727631ed9..12325594827f1 100644
--- a/recipes/nda-tools/meta.yaml
+++ b/recipes/nda-tools/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "nda-tools" %}
-{% set version = "0.2.25" %}
-{% set sha256 = "2b3b5d27a7884124eb990378d1fc9a38cba555ff7b49764f42ae1b97d1cf0580" %}
+{% set version = "0.2.27" %}
+{% set sha256 = "79cb91fe4265384287a833911b91747265449e1040a3e88c7c8566d0a561d8a4" %}
 
 package:
   name: {{ name }}
@@ -13,29 +13,27 @@ source:
 build:
   noarch: python
   number: 0
-  script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
+  script: {{ PYTHON }} -m pip install . --no-build-isolation --no-deps -vvv
+  entry_points:
+    - vtcmd = NDATools.clientscripts.vtcmd:main
+    - downloadcmd = NDATools.clientscripts.downloadcmd:main
+    - unit_tests = tests.run_unit_tests:main
+    - integration_tests = tests.run_integration_tests:main
+  run_exports:
+    - {{ pin_subpackage('nda-tools', max_pin="x.x") }}
 
 requirements:
   host:
     - python
     - pip
-    - keyring 
-    - pyyaml 
-    - packaging 
-    - mock 
-    - requests 
-    - tqdm 
-    - botocore 
-    - boto3
   run:
     - python
-    - keyring 
-    - pyyaml 
-    - packaging 
-    - mock 
-    - requests 
-    - tqdm 
-    - botocore 
+    - keyring
+    - pyyaml
+    - packaging
+    - mock
+    - requests
+    - tqdm
     - boto3
     - pandas
 
diff --git a/recipes/ndex2/meta.yaml b/recipes/ndex2/meta.yaml
index 29d3f36ab8cbb..b3b3536e16221 100644
--- a/recipes/ndex2/meta.yaml
+++ b/recipes/ndex2/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "ndex2" %}
-{% set version = "3.5.1" %}
+{% set version = "3.8.0" %}
 
 
 package:
@@ -8,12 +8,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/ndex2-{{ version }}.tar.gz"
-  sha256: "e4bfecf0f75c4d1f22cf59f6f04af458defa82946d1baabec494553fd4936e92"
+  sha256: "9f4d7f4b9594664191fba5c6512e315ed47b13bc416df5769802f87a7c22d1c8"
 
 build:
   noarch: python
   number: 0
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('ndex2', max_pin="x") }}
 
 requirements:
   host:
@@ -36,15 +38,12 @@ test:
   imports:
     - ndex2
     - ndex2cx
-  commands:
-    - pip check
-  requires:
-    - pip
 
 about:
   home: "https://github.com/ndexbio/ndex2-client"
   summary: "Nice CX Python includes a client and a data model."
   license: BSD-3-Clause
+  license_family: BSD
   license_file: LICENSE.txt
   dev_url: "https://github.com/ndexbio/ndex2-client"
   doc_url: "https://github.com/ndexbio/ndex2-client/blob/master/README.rst"
diff --git a/recipes/neat/meta.yaml b/recipes/neat/meta.yaml
new file mode 100644
index 0000000000000..6609a5675e559
--- /dev/null
+++ b/recipes/neat/meta.yaml
@@ -0,0 +1,49 @@
+{% set name = "NEAT" %}
+{% set version = "4.2.1" %}
+
+package:
+  name: '{{ name|lower }}'
+  version: '{{ version }}'
+
+source:
+  url: https://github.com/ncsa/{{ name }}/archive/{{ version }}.tar.gz
+  sha256: a79b2d733495fadb0e9fbcfffa98f9112a5afa03490f8c484c3542ee178e9bdb
+  
+
+build:
+  run_exports:    
+    - {{ pin_subpackage('neat', max_pin="x") }}
+  script: "{{ PYTHON }} -m pip install --no-deps --ignore-installed --no-cache-dir -vvv ."
+  number: 0
+  noarch: python
+
+requirements:
+  host:
+    - python >=3.10
+    - poetry-core >=1.0.0
+    - pip
+  run:
+    - python >=3.10
+    - biopython =1.79
+    - pkginfo
+    - matplotlib-base
+    - numpy
+    - seaborn
+    - pyyaml
+    - scipy
+    - bedtools
+    - pybedtools >=0.9.0
+    - htslib
+    - pysam
+    - frozendict
+
+test:
+  commands:
+    - neat -h | grep read-simulator
+
+about:
+  home: https://github.com/ncsa/NEAT/
+  license: BSD-3-Clause
+  license_family: BSD
+  license_file: LICENSE.md
+  summary: Toolset for generating synthethic FASTQ, VCF and BAM files.
diff --git a/recipes/necat/build.sh b/recipes/necat/build.sh
index 7b6ab162326f0..8d430300b1ee6 100644
--- a/recipes/necat/build.sh
+++ b/recipes/necat/build.sh
@@ -1,23 +1,28 @@
 #!/bin/bash
 set -ex
 
-export CFLAGS="$CFLAGS  -I$PREFIX/include"
-export CXXFLAGS="$CXXFLAGS  -I$PREFIX/include"
-export LDFLAGS="$LDFLAGS -L$PREFIX/lib"
+export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
+export CFLAGS="${CFLAGS} -O3 -I${PREFIX}/include"
+export CXXFLAGS="${CXXFLAGS} -O3 -I${PREFIX}/include"
+
+BIN_ROOT="Linux-amd64/bin"
+case $(uname -m) in
+    arm64|aarch64) BIN_ROOT="Linux-aarch64/bin" ;;
+esac
 
 # build
-make -C src CFLAGS+="${CFLAGS}" LDFLAGS+="${LDFLAGS}" CXXFLAGS+="${CXXFLAGS}"
+make -C src CFLAGS+="${CFLAGS}" LDFLAGS+="${LDFLAGS}" CXXFLAGS+="${CXXFLAGS}" -j"${CPU_COUNT}"
 
 # create and populate binary file
 mkdir -p $PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM/bin/
-cp -r Linux-amd64/bin/*  $PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM/bin/
+cp -rf $BIN_ROOT/*  $PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM/bin/
 
 # create calling script
-mkdir $PREFIX/bin/
+mkdir -p ${PREFIX}/bin/
 cat <<EOF > $PREFIX/bin/necat
 #!/bin/bash
 
 PATH=\$PATH:$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM/bin/ necat.pl "\$@"
 EOF
 
-chmod +x $PREFIX/bin/necat
+chmod 755 ${PREFIX}/bin/necat
diff --git a/recipes/necat/meta.yaml b/recipes/necat/meta.yaml
index 5b659eee69475..662576b73a10f 100644
--- a/recipes/necat/meta.yaml
+++ b/recipes/necat/meta.yaml
@@ -1,8 +1,9 @@
+{% set name = "necat" %}
 {% set version = "0.0.1_update20200803" %}
 {% set sha256 = "5ddd147b5be6b1fac2f6c10b18c9b587838f2304d2584087c4ed6f628eced06c" %}
 
 package:
-  name: necat
+  name: {{ name }}
   version: {{ version }}
 
 source:
@@ -36,10 +37,11 @@ source:
     - src_renumber_sequences_main.mk.patch
     - src_reorder_cns_reads_main.mk.patch
     - src_ctg_cns_main.mk.patch
+    - src_ctg_cns_filter_m4.mk.patch
+    - src_ctg_cns_pm4_main.mk.patch
     - src_ctgpm_ctgpm.mk.patch
     - src_ctgpm_fix_can_info.mk.patch
     - src_ctgpm_split_ctgs.mk.patch
-    - src_pm4_main.mk.patch
     - src_preprocess_raw_reads_main.mk.patch
     - src_reference_mapping_rm_one_vol_main.mk.patch
     - src_fsa_fsa.mk.patch
@@ -52,7 +54,9 @@ source:
 
 build:
   skip: True  # [osx]
-  number: 4
+  number: 5
+  run_exports:
+    - {{ pin_subpackage("necat", max_pin="x.x") }}
 
 requirements:
   build:
@@ -67,9 +71,19 @@ requirements:
 
 test:
   commands:
-    - necat | grep Usage
+    - necat | grep "Usage"
 
 about:
-  home: https://github.com/xiaochuanle/NECAT
-  license: Unknow
-  summary: Nanopore data assembler
+  home: "https://github.com/xiaochuanle/NECAT"
+  license: Unknown
+  summary: "NECAT is an error correction and de-novo assembly tool for Nanopore long noisy reads."
+  dev_url: "https://github.com/xiaochuanle/NECAT"
+  doc_url: "https://github.com/xiaochuanle/NECAT/blob/master/README.md"
+
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - doi:10.1038/s41467-020-20236-7
+    - biotools:necat
+    - usegalaxy-eu:necat
diff --git a/recipes/necat/src_ctg_cns_filter_m4.mk.patch b/recipes/necat/src_ctg_cns_filter_m4.mk.patch
new file mode 100644
index 0000000000000..2ab69d0e97297
--- /dev/null
+++ b/recipes/necat/src_ctg_cns_filter_m4.mk.patch
@@ -0,0 +1,13 @@
+diff --git a/src/ctg_cns/filter_m4.mk b/src/ctg_cns/filter_m4.mk
+index 822129e..77b441c 100644
+--- a/src/ctg_cns/filter_m4.mk
++++ b/src/ctg_cns/filter_m4.mk
+@@ -11,7 +11,7 @@ SOURCES  := filter_m4.c pm4.c load_ctg_read_ids.c
+ SRC_INCDIRS  := .
+ 
+ TGT_LDFLAGS := -L${TARGET_DIR}
+-TGT_LDLIBS  := -lontcns
++TGT_LDLIBS  := -lontcns -lz -lpthread -lstdc++ -lm 
+ TGT_PREREQS := libontcns.a
+ 
+ SUBMAKEFILES :=
\ No newline at end of file
diff --git a/recipes/necat/src_pm4_main.mk.patch b/recipes/necat/src_ctg_cns_pm4_main.mk.patch
similarity index 73%
rename from recipes/necat/src_pm4_main.mk.patch
rename to recipes/necat/src_ctg_cns_pm4_main.mk.patch
index 092aca420585d..49e7239b93bc8 100644
--- a/recipes/necat/src_pm4_main.mk.patch
+++ b/recipes/necat/src_ctg_cns_pm4_main.mk.patch
@@ -1,5 +1,5 @@
 diff --git a/src/ctg_cns/pm4_main.mk b/src/ctg_cns/pm4_main.mk
-index a020fb3..04c17c5 100644
+index a020fb3..a536385 100644
 --- a/src/ctg_cns/pm4_main.mk
 +++ b/src/ctg_cns/pm4_main.mk
 @@ -11,7 +11,7 @@ SOURCES  := pm4_main.c pm4.c
@@ -7,7 +7,7 @@ index a020fb3..04c17c5 100644
  
  TGT_LDFLAGS := -L${TARGET_DIR}
 -TGT_LDLIBS  := -lontcns
-+TGT_LDLIBS  := -lontcns -lpthread
++TGT_LDLIBS  := -lontcns -lz -lpthread -lstdc++ -lm 
  TGT_PREREQS := libontcns.a
  
- SUBMAKEFILES :=
+ SUBMAKEFILES :=
\ No newline at end of file
diff --git a/recipes/necat/src_partition_candidates_main.mk.patch b/recipes/necat/src_partition_candidates_main.mk.patch
index 87da273e6066d..56f01b1d0b53f 100644
--- a/recipes/necat/src_partition_candidates_main.mk.patch
+++ b/recipes/necat/src_partition_candidates_main.mk.patch
@@ -7,7 +7,7 @@ index 19c70f0..0581c1f 100644
  
  TGT_LDFLAGS := -L${TARGET_DIR}
 -TGT_LDLIBS  := -lontcns
-+TGT_LDLIBS  := -lontcns -lpthread
++TGT_LDLIBS  := -lontcns -lz -lpthread
  TGT_PREREQS := libontcns.a
  
  SUBMAKEFILES :=
diff --git a/recipes/necat/src_partition_m4_main.mk.patch b/recipes/necat/src_partition_m4_main.mk.patch
index 8487acf4dcacc..01ad339e7b650 100644
--- a/recipes/necat/src_partition_m4_main.mk.patch
+++ b/recipes/necat/src_partition_m4_main.mk.patch
@@ -7,7 +7,7 @@ index 6265052..805ff27 100644
  
  TGT_LDFLAGS := -L${TARGET_DIR}
 -TGT_LDLIBS  := -lontcns
-+TGT_LDLIBS  := -lontcns -lpthread
++TGT_LDLIBS  := -lontcns lz -lpthread
  TGT_PREREQS := libontcns.a
  
  SUBMAKEFILES :=
diff --git a/recipes/necat/src_trim_bases_accurate0_pm4.mk.patch b/recipes/necat/src_trim_bases_accurate0_pm4.mk.patch
index 58408c947c58e..a17935c78e2bf 100644
--- a/recipes/necat/src_trim_bases_accurate0_pm4.mk.patch
+++ b/recipes/necat/src_trim_bases_accurate0_pm4.mk.patch
@@ -7,7 +7,7 @@ index df2e71b..b56e887 100644
  
  TGT_LDFLAGS := -L${TARGET_DIR}
 -TGT_LDLIBS  := -lontcns
-+TGT_LDLIBS  := -lontcns -lpthread
++TGT_LDLIBS  := -lontcns -lz -lpthread
  TGT_PREREQS := libontcns.a
  
  SUBMAKEFILES :=
diff --git a/recipes/necat/src_trim_bases_accurate_pm4.mk.patch b/recipes/necat/src_trim_bases_accurate_pm4.mk.patch
index 986b05ccbfe4a..ad77bb55caa15 100644
--- a/recipes/necat/src_trim_bases_accurate_pm4.mk.patch
+++ b/recipes/necat/src_trim_bases_accurate_pm4.mk.patch
@@ -1,13 +1,13 @@
-diff --git a/src/trim_bases_accurate/pm4.mk b/src/trim_bases_accurate/pm4.mk
-index 0d9d277..dcba7cf 100644
---- a/src/trim_bases_accurate/pm4.mk
-+++ b/src/trim_bases_accurate/pm4.mk
-@@ -11,7 +11,7 @@ SOURCES  := pm4_aux.c pm4_main.c
+diff --git a/src/trim_bases_accurate/pm4.mk b/src/trim_bases_accurate/pm4.mk
+index 0d9d277..dcba7cf 100644
+--- a/src/trim_bases_accurate/pm4.mk
++++ b/src/trim_bases_accurate/pm4.mk
+@@ -11,7 +11,7 @@ SOURCES  := pm4_aux.c pm4_main.c
  SRC_INCDIRS  := . 
  
  TGT_LDFLAGS := -L${TARGET_DIR}
 -TGT_LDLIBS  := -lontcns
-+TGT_LDLIBS  := -lontcns -lpthread
++TGT_LDLIBS  := -lontcns -lz -lpthread
  TGT_PREREQS := libontcns.a
  
  SUBMAKEFILES :=
diff --git a/recipes/necat/src_trim_bases_extract_trimmerd_reads.mk.patch b/recipes/necat/src_trim_bases_extract_trimmerd_reads.mk.patch
index af03197a3a694..9068fa5a2e0e1 100644
--- a/recipes/necat/src_trim_bases_extract_trimmerd_reads.mk.patch
+++ b/recipes/necat/src_trim_bases_extract_trimmerd_reads.mk.patch
@@ -6,7 +6,7 @@ index 8f493f1..4d06513 100644
  
  SRC_INCDIRS  := . 
  
-+TGT_LDLIBS  := -lontcns -lz -lpthread
++TGT_LDLIBS  := -lontcns -lz -lpthread -lstdc++ -lm
  TGT_LDFLAGS := -L${TARGET_DIR}
 -TGT_LDLIBS  := -lontcns
  TGT_PREREQS := libontcns.a
diff --git a/recipes/necat/src_trim_bases_largest_cover_range.mk.patch b/recipes/necat/src_trim_bases_largest_cover_range.mk.patch
index 04f183ebd8b88..f119a87a2cbd2 100644
--- a/recipes/necat/src_trim_bases_largest_cover_range.mk.patch
+++ b/recipes/necat/src_trim_bases_largest_cover_range.mk.patch
@@ -7,7 +7,7 @@ index 17134bf..9e89659 100644
  
  TGT_LDFLAGS := -L${TARGET_DIR}
 -TGT_LDLIBS  := -lontcns
-+TGT_LDLIBS  := -lontcns -lpthread
++TGT_LDLIBS  := -lontcns -lz -lpthread -lstdc++ -lm
  TGT_PREREQS := libontcns.a
  
  SUBMAKEFILES :=
diff --git a/recipes/necat/src_trim_bases_pm4.mk.patch b/recipes/necat/src_trim_bases_pm4.mk.patch
index e7746d1e8a211..7ce20fdc1583c 100644
--- a/recipes/necat/src_trim_bases_pm4.mk.patch
+++ b/recipes/necat/src_trim_bases_pm4.mk.patch
@@ -7,7 +7,7 @@ index d007c96..778a4d2 100644
  
  TGT_LDFLAGS := -L${TARGET_DIR}
 -TGT_LDLIBS  := -lontcns
-+TGT_LDLIBS  := -lontcns -lpthread
++TGT_LDLIBS  := -lontcns -lz -lpthread
  TGT_PREREQS := libontcns.a
  
  SUBMAKEFILES :=
diff --git a/recipes/neofox/meta.yaml b/recipes/neofox/meta.yaml
index 8851aa1e1e53e..1440752000709 100644
--- a/recipes/neofox/meta.yaml
+++ b/recipes/neofox/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "neofox" %}
-{% set version = "1.0.2" %}
+{% set version = "1.1.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,62 +7,58 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: e93ea0c146fe4fbf9e477ecef8d973b0b84121733135702b581a1ff0b565edb8
+  sha256: c09b8b3df49b290ee239301626edfd9057c354ab6e8bd344aa1cae2765f4b105
 
 build:
   number: 0
   noarch: python
   entry_points:
     - neofox=neofox.command_line:neofox_cli
+    - neofox-epitope=neofox.command_line:neofox_epitope_cli
     - neofox-configure=neofox.command_line:neofox_configure
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('neofox', max_pin="x") }}
 
 requirements:
   host:
+    - cython
     - betterproto >=1.2.5,<1.3.0
     - biopython ==1.76
-    - dask[complete] >=2021.10.0
-    - distributed >=2021.10.0
-    - faker >=6.6.2,<7.0.0
+    - dask[complete] >=2022.2.0,<2023.0.0
+    - distributed >=2022.2.0,<2023.0.0
+    - faker >=13.13.0,<13.14.0
     - logzero >=1.5.0
     - mock >=4.0.3,<5.0.0
-    - numpy >=1.21
+    - numpy >=1.21,<1.22
     - orjson >=3.5.2,<4.0.0
-    - pandas >=1.1.5
+    - pandas >=1.3.5,<1.4
     - pip
-    - pysam >=0.19.1,<0.20.0
+    - pysam
     - python >=3.7,<=3.8
     - python-dotenv >=0.12.0,<0.13.0
-    - scikit-learn >=0.22.1,<0.23.0
-    - scipy >=1.5.4
+    - scikit-learn ==0.22.1
+    - scipy >=1.7.3,<1.8
     - xmltodict >=0.12.0,<0.13.0
-    - blast ==2.10.1
-    - r-base
-    - r-lattice
-    - r-ggplot2
-    - r-caret
-    - r-peptides
-    - r-doparallel
-    - r-gbm
-    - bioconductor-biostrings
+    - blast
   run:
     - betterproto >=1.2.5,<1.3.0
     - biopython ==1.76
-    - dask[complete] >=2021.10.0
-    - distributed >=2021.10.0
-    - faker >=6.6.2,<7.0.0
+    - dask[complete] >=2022.2.0,<2023.0.0
+    - distributed >=2022.2.0,<2023.0.0
+    - faker >=13.13.0,<13.14.0
     - logzero >=1.5.0
     - mock >=4.0.3,<5.0.0
-    - numpy >=1.21
+    - numpy >=1.21,<1.22
     - orjson >=3.5.2,<4.0.0
-    - pandas >=1.1.5
-    - pysam >=0.19.1,<0.20.0
+    - pandas >=1.3.5,<1.4
+    - pysam
     - python >=3.7,<=3.8
     - python-dotenv >=0.12.0,<0.13.0
-    - scikit-learn >=0.22.1,<0.23.0
-    - scipy >=1.5.4
+    - scikit-learn ==0.22.1
+    - scipy >=1.7.3,<1.8
     - xmltodict >=0.12.0,<0.13.0
-    - blast ==2.10.1
+    - blast
     - r-base
     - r-lattice
     - r-ggplot2
@@ -89,7 +85,6 @@ test:
     - neofox.published_features.dissimilarity_garnish
     - neofox.published_features.hex
     - neofox.published_features.iedb_immunogenicity
-    - neofox.published_features.neoag
     - neofox.published_features.neoantigen_fitness
     - neofox.published_features.self_similarity
     - neofox.published_features.vaxrank
@@ -104,13 +99,15 @@ test:
 
 about:
   home: "https://github.com/tron-bioinformatics/neofox"
-  license: "GNU General Public v3 (GPLv3)"
+  license: "GPL-3.0-or-later"
   license_family: GPL3
   license_file: LICENSE
   summary: "Annotation of mutated peptide sequences (mps) with published or novel potential neo-epitope descriptors"
   doc_url: "https://neofox.readthedocs.io/"
 
 extra:
+  skip-lints:
+    - cython_must_be_in_host
   recipe-maintainers:
     - priesgo
     - franla23
diff --git a/recipes/neoloop/meta.yaml b/recipes/neoloop/meta.yaml
new file mode 100644
index 0000000000000..8f25df575a9bd
--- /dev/null
+++ b/recipes/neoloop/meta.yaml
@@ -0,0 +1,78 @@
+{% set name = "neoloop" %}
+{% set version = "0.4.3.post2" %}
+
+package:
+  name: '{{ name|lower }}'
+  version: '{{ version }}'
+
+source:
+  url: https://pypi.io/packages/source/n/neoloop/neoloop-0.4.3.post2.tar.gz
+  sha256: 2b2d2b9a807a02e4b52282a1cc0e4131f1dbbd5b386da68acdf5d4f320df740a
+
+build:
+  number: 0
+  noarch: python
+  script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  host:
+    - _libgcc_mutex 0.1 conda_forge
+    - _openmp_mutex 4.5 2_gnu
+    - ca-certificates 2022.12.7 ha878542_0
+    - certifi 2022.12.7 pyhd8ed1ab_0
+    - ld_impl_linux-64 2.40 h41732ed_0
+    - libffi 3.4.2 h7f98852_5
+    - libgcc-ng 12.2.0 h65d4601_19
+    - libgomp 12.2.0 h65d4601_19
+    - libstdcxx-ng 12.2.0 h46fd767_19
+    - ncurses 6.3 h27087fc_1
+    - openssl 1.1.1t h0b41bf4_0
+    - pip 23.0.1 pyhd8ed1ab_0
+    - python 3.10.8 h257c98d_0_cpython
+    - python_abi 3.10 3_cp310
+    - readline 8.2 h8228510_1
+    - setuptools 67.6.0 pyhd8ed1ab_0
+    - tk 8.6.12 h27826a3_0
+    - wheel 0.40.0 pyhd8ed1ab_0
+    - xz 5.2.6 h166bdaf_0
+    - zlib 1.2.13 h166bdaf_4
+  run:
+    - cooler
+    - h5py
+    - intervaltree
+    - joblib 1.1.0
+    - matplotlib-base
+    - networkx
+    - numpy
+    - pandas
+    - pomegranate 0.14.8
+    - pybigwig
+    - pyensembl
+    - python >=3.6
+    - r-base
+    - r-mgcv
+    - rpy2
+    - scikit-learn 1.1.2
+    - scipy
+    - tadlib
+
+test:
+  imports:
+    - neoloop
+    - neoloop.cnv
+    - neoloop.pastis
+    - neoloop.tadtool
+    - neoloop.visualize
+
+about:
+  home: https://github.com/XiaoTaoWang/NeoLoopFinder
+  license: https://github.com/XiaoTaoWang/NeoLoopFinder/blob/master/LICENSE
+  license_family: OTHER
+  license_file: LICENSE
+  summary: Predict neo-loops induced by structural variations
+  dev_url: 'https://github.com/XiaoTaoWang/NeoLoopFinder'
+
+extra:
+  recipe-maintainers: ninashenker
diff --git a/recipes/nextalign/meta.yaml b/recipes/nextalign/meta.yaml
index f2d7a6d6dc9bf..249e23a402905 100644
--- a/recipes/nextalign/meta.yaml
+++ b/recipes/nextalign/meta.yaml
@@ -6,16 +6,20 @@ package:
   version: "{{ version }}"
 
 source:
-  - url: https://github.com/nextstrain/nextclade/releases/download/{{ version }}/{{ name }}-x86_64-unknown-linux-gnu  # [linux64]
-    sha256: 90602c64c89c6921f6713d60f726b890d8892b4c1f4f0334fbd6e4b10fd8db69                                           # [linux64]
+  - url: https://github.com/nextstrain/nextclade/releases/download/{{ version }}/{{ name }}-x86_64-unknown-linux-gnu   # [linux and x86_64]
+    sha256: 90602c64c89c6921f6713d60f726b890d8892b4c1f4f0334fbd6e4b10fd8db69                                           # [linux and x86_64]
+  - url: https://github.com/nextstrain/nextclade/releases/download/{{ version }}/{{ name }}-aarch64-unknown-linux-gnu  # [linux and aarch64]
+    sha256: b6fddd12cc4767c0316b13ce5f6fe8d6e26097bfb52f5c957615ffc884ce2448                                           # [linux and aarch64]
   - url: https://github.com/nextstrain/nextclade/releases/download/{{ version }}/{{ name }}-x86_64-apple-darwin        # [osx and x86_64]
     sha256: 0585a0c4af33ac28a2cb2dd63eb5d5c9b749bf6a1af319b999b8440da9dd35d8                                           # [osx and x86_64]
-  - url: https://github.com/nextstrain/nextclade/releases/download/{{ version }}/{{ name }}-aarch64-apple-darwin       # [arm64]
-    sha256: 2d8ec8f379b150c2ac271f3c08ca79ee372b1fb14da3dc8e1b3033a1b65cfc58                                           # [arm64]
+  - url: https://github.com/nextstrain/nextclade/releases/download/{{ version }}/{{ name }}-aarch64-apple-darwin       # [osx and arm64]
+    sha256: 2d8ec8f379b150c2ac271f3c08ca79ee372b1fb14da3dc8e1b3033a1b65cfc58                                           # [osx and arm64]
 
 build:
-  number: 0
+  number: 1
   binary_relocation: False
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
 
 requirements:
 
@@ -23,7 +27,7 @@ test:
   files:
     - test-data
   commands:
-    - nextalign --help
+    - nextalign --help # [not aarch64]
 
 about:
   home: https://github.com/nextstrain/nextclade
@@ -34,6 +38,8 @@ about:
   dev_url: https://github.com/nextstrain/nextclade
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   recipe-maintainers:
     - cjw85
     - thanhleviet
diff --git a/recipes/nextalign/run_test.sh b/recipes/nextalign/run_test.sh
index ca4e450ff02c5..d7affe3faa46c 100644
--- a/recipes/nextalign/run_test.sh
+++ b/recipes/nextalign/run_test.sh
@@ -2,9 +2,14 @@
 
 set -euxo pipefail
 
+# the binary needs GLIBC 2.18+ on Linux ARM64 while 2.17 is available
+if [ $(uname -m) != "aarch64" ]; then
+
 nextalign run \
-test-data/sequences.fasta \
---reference test-data/reference.fasta \
---genemap test-data/genemap.gff \
---output-all output/ \
---output-basename nextalign
+    test-data/sequences.fasta \
+    --reference test-data/reference.fasta \
+    --genemap test-data/genemap.gff \
+    --output-all output/ \
+    --output-basename nextalign
+
+fi
\ No newline at end of file
diff --git a/recipes/nextclade/build.sh b/recipes/nextclade/build.sh
index 2de4b8e90b81a..8af0b63eb3b7c 100644
--- a/recipes/nextclade/build.sh
+++ b/recipes/nextclade/build.sh
@@ -4,3 +4,8 @@ ls "${SRC_DIR}"
 chmod +x "${SRC_DIR}"/nextclade*
 mkdir -p "${PREFIX}/bin"
 mv "${SRC_DIR}"/nextclade* "${PREFIX}"/bin/nextclade
+
+# Allow nextclade to be called as nextclade$MAJOR_VERSION
+# $PKG_VERSION is in the form of MAJOR.MINOR.PATCH
+MAJOR_VERSION=$(echo "$PKG_VERSION" | cut -d. -f1)
+ln -s "${PREFIX}"/bin/nextclade "${PREFIX}"/bin/nextclade"$MAJOR_VERSION"
\ No newline at end of file
diff --git a/recipes/nextclade/meta.yaml b/recipes/nextclade/meta.yaml
index e0240b83896cb..e8236c90f1edd 100644
--- a/recipes/nextclade/meta.yaml
+++ b/recipes/nextclade/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "nextclade" %}
-{% set version = "2.14.0" %}
+{% set version = "3.6.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,21 +7,26 @@ package:
 
 source:
   - url: https://github.com/nextstrain/nextclade/releases/download/{{ version }}/{{ name }}-x86_64-unknown-linux-gnu   # [linux64]
-    sha256: 1a9a82655830243ffd01937ebb895744ff46ec49f725ef6feff9a3f0e37d90d1                                           # [linux64]
+    sha256: 21a9efce9719dc03d44d417ce6eb97b932558a44e661106bb6bf22850126cce1                                           # [linux64]
+  - url: https://github.com/nextstrain/nextclade/releases/download/{{ version }}/{{ name }}-aarch64-unknown-linux-gnu  # [aarch64]
+    sha256: 8d5478208a83c1cb695a3e54775ce0b0bff7d0dd0787a8cca49bb08db6d1fe08                                           # [aarch64]
   - url: https://github.com/nextstrain/nextclade/releases/download/{{ version }}/{{ name }}-x86_64-apple-darwin        # [osx and x86_64]
-    sha256: 432f56d2152edda49b8c4a2c3f81d9a5da7419a6cc7c4a3d5205d17d5f834cf6                                           # [osx and x86_64]
-  - url: https://github.com/nextstrain/nextclade/releases/download/{{ version }}/{{ name }}-aarch64-apple-darwin       # [arm64]
-    sha256: aaac669618d953381428eac3674fe6cb22bef66e7c1ae55552f6a1567f3d3030                                           # [arm64]
+    sha256: c6d6476e81d499caa3578b5446906b3853299570aab932e71b7d6be4620cb4ad                                           # [osx and x86_64]
+  - url: https://github.com/nextstrain/nextclade/releases/download/{{ version }}/{{ name }}-aarch64-apple-darwin       # [osx and arm64]
+    sha256: f86fb2c89605c436790f473af4a34210eb08509a2d2a935cd3ae3e274d31dce5                                           # [osx and arm64]
 
 build:
-  number: 1
+  number: 0
   binary_relocation: False
+  run_exports:
+  - {{ pin_compatible(name, max_pin='x') }}
 
 requirements:
 
+# Disable test for aarch64, as nextclade requires glibc 2.18 not available on aarch64
 test:
   commands:
-    - nextclade --help
+    - nextclade --help  # [not aarch64]
 
 about:
   home: https://github.com/nextstrain/nextclade
@@ -32,6 +37,8 @@ about:
   dev_url: https://github.com/nextstrain/nextclade
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   recipe-maintainers:
     - pvanheus
     - corneliusroemer
diff --git a/recipes/nextclade/run_test.sh b/recipes/nextclade/run_test.sh
index fab365bd0ad62..fff9dde423c45 100644
--- a/recipes/nextclade/run_test.sh
+++ b/recipes/nextclade/run_test.sh
@@ -3,11 +3,27 @@
 set -x
 set -e
 
-nextclade dataset get --name 'sars-cov-2' --output-dir 'data/sars-cov-2'
-
-nextclade run \
---input-dataset 'data/sars-cov-2' \
-'data/sars-cov-2/sequences.fasta' \
---output-tsv 'output/nextclade.tsv' \
---output-tree 'output/tree.json' \
---output-all 'output/'
+MAJOR_VERSION=$(echo "$PKG_VERSION" | cut -d. -f1)
+
+# Skip if aarch64 on linux
+# Because Nextclade requires glibc >= 2.18 not available yet on aarch64 builder
+if [[ $target_platform == linux-aarch64 ]]; then
+    echo "Skipping test on aarch64"
+    exit 0
+fi
+
+for BIN in nextclade nextclade$MAJOR_VERSION; do
+    "$BIN" --version
+
+    "$BIN" dataset get --name 'sars-cov-2' --output-dir 'data/sars-cov-2'
+
+    "$BIN" run \
+    --input-dataset 'data/sars-cov-2' \
+    'data/sars-cov-2/sequences.fasta' \
+    --output-tsv 'output/nextclade.tsv' \
+    --output-tree 'output/tree.json' \
+    --output-all 'output/'
+
+    rm -rf data output
+
+done
diff --git a/recipes/nextclade2/build.sh b/recipes/nextclade2/build.sh
new file mode 100644
index 0000000000000..53cd234503763
--- /dev/null
+++ b/recipes/nextclade2/build.sh
@@ -0,0 +1,6 @@
+#!/usr/bin/env bash
+
+ls "${SRC_DIR}"
+chmod +x "${SRC_DIR}"/nextclade*
+mkdir -p "${PREFIX}/bin"
+mv "${SRC_DIR}"/nextclade* "${PREFIX}"/bin/nextclade2
diff --git a/recipes/nextclade2/meta.yaml b/recipes/nextclade2/meta.yaml
new file mode 100644
index 0000000000000..6c32c4579b5ae
--- /dev/null
+++ b/recipes/nextclade2/meta.yaml
@@ -0,0 +1,41 @@
+{% set name = "nextclade2" %}
+{% set version = "2.14.0" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  - url: https://github.com/nextstrain/nextclade/releases/download/{{ version }}/nextclade-x86_64-unknown-linux-gnu   # [linux64]
+    sha256: 1a9a82655830243ffd01937ebb895744ff46ec49f725ef6feff9a3f0e37d90d1                                           # [linux64]
+  - url: https://github.com/nextstrain/nextclade/releases/download/{{ version }}/nextclade-x86_64-apple-darwin        # [osx and x86_64]
+    sha256: 432f56d2152edda49b8c4a2c3f81d9a5da7419a6cc7c4a3d5205d17d5f834cf6                                           # [osx and x86_64]
+  - url: https://github.com/nextstrain/nextclade/releases/download/{{ version }}/nextclade-aarch64-apple-darwin       # [arm64]
+    sha256: aaac669618d953381428eac3674fe6cb22bef66e7c1ae55552f6a1567f3d3030                                           # [arm64]
+
+build:
+  number: 0
+  binary_relocation: False
+  run_exports:
+  - {{ pin_compatible(name, max_pin='x') }}
+
+requirements:
+
+test:
+  commands:
+    - nextclade2 --help
+
+about:
+  home: https://github.com/nextstrain/nextclade
+  license: MIT
+  license_family: MIT
+  summary: "Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement"
+  doc_url: https://docs.nextstrain.org/projects/nextclade/en/stable/
+  dev_url: https://github.com/nextstrain/nextclade
+
+extra:
+  recipe-maintainers:
+    - corneliusroemer
+  skip-lints:
+    # repackaged binary
+    - should_be_noarch_generic
diff --git a/recipes/nextclade2/run_test.sh b/recipes/nextclade2/run_test.sh
new file mode 100644
index 0000000000000..62e0808d80930
--- /dev/null
+++ b/recipes/nextclade2/run_test.sh
@@ -0,0 +1,17 @@
+#!/usr/bin/env bash
+
+set -x
+set -e
+
+nextclade2 --version
+
+nextclade2 dataset get --name 'sars-cov-2' --output-dir 'data/sars-cov-2'
+
+nextclade2 run \
+--input-dataset 'data/sars-cov-2' \
+'data/sars-cov-2/sequences.fasta' \
+--output-tsv 'output/nextclade.tsv' \
+--output-tree 'output/tree.json' \
+--output-all 'output/'
+
+rm -rf data output
diff --git a/recipes/nextdenovo/build.sh b/recipes/nextdenovo/build.sh
index adf1e0d4cba9b..2bbd1256310bb 100644
--- a/recipes/nextdenovo/build.sh
+++ b/recipes/nextdenovo/build.sh
@@ -1,10 +1,10 @@
 #!/bin/bash
-set -x
+set -ex
+
+OUTDIR="${SP_DIR}/nextdenovo"
 
-PYVER=`python -c 'import sys; print(str(sys.version_info[0])+"."+str(sys.version_info[1]))'`
-OUTDIR=${PREFIX}/lib/python${PYVER}/site-packages/nextdenovo
 mkdir -p ${PREFIX}/bin ${OUTDIR}
-cp -r ./* ${OUTDIR}
-chmod a+x ${OUTDIR}/nextDenovo
-ln -s ${OUTDIR}/nextDenovo ${PREFIX}/bin/nextDenovo
 
+cp -rf ${SRC_DIR}/* ${OUTDIR}
+chmod 755 ${OUTDIR}/nextDenovo
+ln -sf ${OUTDIR}/nextDenovo ${PREFIX}/bin/nextDenovo
diff --git a/recipes/nextdenovo/meta.yaml b/recipes/nextdenovo/meta.yaml
index 41813d4ac069a..6ce4c5e6440d4 100644
--- a/recipes/nextdenovo/meta.yaml
+++ b/recipes/nextdenovo/meta.yaml
@@ -1,8 +1,9 @@
+{% set name = "nextdenovo" %}
 {% set version = "2.5.2" %}
 {% set sha256 = "5c7ca4aa3de234f4e0efd8aaf9eaf60ebd79b5e545ad2878a76162b29d815fe0" %}
 
 package:
-  name: nextdenovo
+  name: {{ name }}
   version: {{ version }}
 
 source:
@@ -11,25 +12,22 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 3
-  # repackages binaries
-  skip: True  # [osx or py < 36]
+  number: 4
+  binary_has_prefix_files:
+    - nextDenovo
+  run_exports:
+    - {{ pin_subpackage('nextdenovo', max_pin="x") }}
 
 requirements:
+  build:
+    - {{ compiler('c') }}
+    - make
   host:
     - python
+    - pip
+    - paralleltask
     - bzip2
-    - ca-certificates
     - zlib
-    - ncurses
-    - openssl
-    - pip
-    - readline
-    - setuptools
-    - tk
-    - tzdata
-    - wheel
-    - xz
   run:
     - python
     - paralleltask
@@ -39,13 +37,20 @@ test:
     - test_data
   commands:
     - 'nextDenovo --help'
-    #- 'nextDenovo test_data/run.cfg' # Partly success: some jobs are submitted, but others are killed before completion
+    #- 'nextDenovo test_data/run.cfg
+    # Partly success: some jobs are submitted, but others are killed before completion
 
 about:
-  home: https://github.com/Nextomics/NextDenovo
-  license: GNU General Public License v3.0
-  summary: String graph-based de novo assembler for long reads (CLR, HiFi and ONT)
+  home: "https://github.com/Nextomics/NextDenovo"
+  license: "GPL-3.0-or-later"
+  license_family: GPL3
+  license_file: LICENSE
+  summary: "String graph-based de novo assembler for long reads (CLR, HiFi and ONT)"
+  dev_url: "https://github.com/Nextomics/NextDenovo"
+  doc_url: "https://nextdenovo.readthedocs.io/en/latest"
 
 extra:
-  skip-lints:
-    - should_be_noarch_generic
+  identifiers:
+    - doi:10.1101/2023.03.09.531669
+    - biotools:nextdenovo
+    - usegalaxy-eu:nextdenovo
diff --git a/recipes/nextflow/meta.yaml b/recipes/nextflow/meta.yaml
index 04e79f3056e7c..02b05a70e1e66 100644
--- a/recipes/nextflow/meta.yaml
+++ b/recipes/nextflow/meta.yaml
@@ -1,13 +1,15 @@
-{% set version = "23.04.1" %}
-{% set sha256 = "5de3e09117ca648b2b50778d3209feb249b35de0f97cdbcf52c7d92c7a96415c" %}
+{% set version = "24.04.2" %}
+{% set sha256 = "19fb76325146dddc8d09695bab108de77df76aa31c98bf8894f0a764e6b88dc3" %}
 
 package:
   name: nextflow
   version: {{ version }}
 
 build:
-  number: 3
+  number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('nextflow', max_pin="x.x") }}
 
 source:
   url: https://github.com/nextflow-io/nextflow/releases/download/v{{ version }}/nextflow
@@ -15,13 +17,13 @@ source:
 
 requirements:
   host:
-    - openjdk >=11,<=20
-    - coreutils
-    - curl
+    - conda-forge::openjdk >=11,<=21
+    - conda-forge::coreutils
+    - conda-forge::curl
   run:
-    - openjdk >=11,<=20
-    - coreutils
-    - curl
+    - conda-forge::openjdk >=11,<=21
+    - conda-forge::coreutils
+    - conda-forge::curl
 
 test:
   commands:
@@ -31,3 +33,8 @@ about:
   home: "https://github.com/nextflow-io/nextflow"
   license: "Apache-2.0"
   summary: "A DSL for data-driven computational pipelines http://nextflow.io"
+
+extra:
+  recipe-maintainers:
+    - pditommaso
+    - mjsteinbaugh
diff --git a/recipes/nextpolish/build.sh b/recipes/nextpolish/build.sh
index a4aee7c2a3417..2950cd00b8fda 100644
--- a/recipes/nextpolish/build.sh
+++ b/recipes/nextpolish/build.sh
@@ -1,31 +1,35 @@
 #!/usr/bin/env bash
 
+export INCLUDE_PATH="${PREFIX}/include"
+export LIBRARY_PATH="${PREFIX}/lib"
+export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
+
 # Skip copying of bwa, minimap2, and samtools
-sed -i.backup \
+sed -i.bak \
     -e "s| bwa samtools minimap2||g" \
     Makefile
 
 # Use conda's gcc and includes, also skip build of bwa, minimap2, and samtools
-sed -i.backup \
+sed -i.bak \
     -e "s| bwa_ samtools_ minimap2_||g" \
     -e "s|gcc|$CC|g" \
     -e "s|-lz|-lz -isystem ${PREFIX}/include|g" \
     util/Makefile
 
 # Add version info (original required internet connection)
-sed -i.backup "s=BIOCONDA_SED_REPLACE=$PKG_VERSION=" lib/kit.py
+sed -i.bak "s=BIOCONDA_SED_REPLACE=$PKG_VERSION=" lib/kit.py
 
 # Create share directory
 SHARE_DIR="${PREFIX}/share/${PKG_NAME}-${PKG_VERSION}"
 mkdir -p ${SHARE_DIR}/
-cp -r ./lib ${SHARE_DIR}/
+cp -rf ./lib ${SHARE_DIR}/
 
 # Build
-make
+make CC="${CC}" CFLAGS="-O3" LDFLAGS="${LDFLAGS}" -j "${CPU_COUNT}"
 mkdir -p ${PREFIX}/bin
-cp bin/* ${PREFIX}/bin
+cp -f bin/* ${PREFIX}/bin
 
 # fix hardcoded path
-sed -i.backup "s=BIOCONDA_SED_REPLACE=$SHARE_DIR=" nextPolish
+sed -i.bak "s=BIOCONDA_SED_REPLACE=$SHARE_DIR=" nextPolish
 chmod 755 nextPolish
-cp nextPolish ${PREFIX}/bin
+cp -f nextPolish ${PREFIX}/bin
diff --git a/recipes/nextpolish/meta.yaml b/recipes/nextpolish/meta.yaml
index bee63263c4917..c0220727c74bc 100644
--- a/recipes/nextpolish/meta.yaml
+++ b/recipes/nextpolish/meta.yaml
@@ -13,20 +13,23 @@ source:
     - fix_get_version.patch
 
 build:
-  number: 1
+  number: 2
+  run_exports:
+    - {{ pin_subpackage('nextpolish', max_pin="x") }}
 
 requirements:
   build:
     - make
-    - zlib
     - {{ compiler('c') }}
   host:
-    - zlib
+    - python
+    - pip
     - paralleltask
+    - bzip2
+    - zlib
   run:
-    - python >=3.6
+    - python
     - bwa
-    - bzip2
     - minimap2
     - paralleltask
     - samtools
@@ -37,16 +40,17 @@ test:
     - nextPolish --version
 
 about:
-  home: https://github.com/Nextomics/NextPolish
-  dev_url: https://github.com/Nextomics/NextPolish
-  doc_url: https://nextpolish.readthedocs.io/en/latest/index.html
-  summary: Fast and accurately polish the genome generated by long reads
-  license: GPL-3
-  license_family: GPL
+  home: "https://github.com/Nextomics/NextPolish"
+  dev_url: "https://github.com/Nextomics/NextPolish"
+  doc_url: "https://nextpolish.readthedocs.io/en/latest"
+  summary: "Fast and accurately polish the genome generated by noisy long reads"
+  license: "GPL-3.0-or-later"
+  license_family: GPL3
   license_file: LICENSE
 
 extra:
   recipe-maintainers:
     - rpetit3
-  container:
-    extended-base: True
+  identifiers:
+    - biotools:NextPolish
+    - doi:10.1093/bioinformatics/btz891
diff --git a/recipes/nextstrain-cli/meta.yaml b/recipes/nextstrain-cli/meta.yaml
index bd5983d39d8fb..1cef58d2d3db1 100644
--- a/recipes/nextstrain-cli/meta.yaml
+++ b/recipes/nextstrain-cli/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "7.1.0" %}
+{% set version = "8.2.0" %}
 
 package:
   name: nextstrain-cli
@@ -6,7 +6,7 @@ package:
 
 source:
   url: https://pypi.io/packages/source/n/nextstrain-cli/nextstrain-cli-{{ version }}.tar.gz
-  sha256: 6f9ad11aadddd1b70c92567689a47480b05b5fb6dd7dd38b16c872f956e162ef
+  sha256: 9b48dd8f32416d43b5f7db8a4a5ca045913a41a4967a5ae189240cbd67c285a2
 
 build:
   number: 0
@@ -14,18 +14,18 @@ build:
   entry_points:
     - nextstrain = nextstrain.cli.__main__:main
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv"
+  run_exports:
+    - {{ pin_subpackage('nextstrain-cli', max_pin='x') }}
 
 requirements:
   host:
-    - python >=3.6
+    - python >=3.8
     - pip
 
   run:
-    - python >=3.6
-    - dataclasses # [py<37]
+    - python >=3.8
     - docutils
     - fasteners
-    - importlib_metadata # [py<38]
     - importlib_resources >=5.3.0 # [py<311]
     - packaging >=3.0.0
     - pyjwt >=2.0.0
@@ -40,9 +40,9 @@ requirements:
     # botocore. We can declare the boto3 dependency and s3fs here, since Conda
     # can resolve these dependency issues.
     # See: https://github.com/nextstrain/cli/blob/77c97bfecaf3dda84a8c20c343afc70cc6659f53/setup.py#L91-L98
-    - fsspec
+    - fsspec !=2023.9.1
     - boto3
-    - s3fs >=2021.04.0
+    - s3fs >=2021.04.0,!=2023.9.1
 
 test:
   requires:
diff --git a/recipes/nf-core/meta.yaml b/recipes/nf-core/meta.yaml
index e90068dc49168..873585fe97504 100644
--- a/recipes/nf-core/meta.yaml
+++ b/recipes/nf-core/meta.yaml
@@ -1,56 +1,67 @@
 {% set name = "nf-core" %}
-{% set version = "2.9" %}
-{% set sha256 = "e953270dbee89c931cf0fe94c3ea7c6418b8e3c0a4427b7bfaeead5ffada6b93" %}
+{% set version = "2.14.1" %}
+{% set sha256 = "35bd8d73ecca4eb87443fada31bc7b2562429de3a4bfbf7261db348d14bf54bb" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/nf_core-{{ version }}.tar.gz
   sha256: '{{ sha256 }}'
 
 build:
   noarch: python
-  number: 0
-  script: "touch requirements.txt && {{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  number: 1
+  script: "touch requirements.txt && {{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
+  entry_points:
+    - nf-core=nf_core.__main__:run_nf_core
+  run_exports:
+    - {{ pin_subpackage('nf-core', max_pin="x") }}
 
 requirements:
   host:
-    - python
+    - python >=3.8
     - pip
     - twine
   run:
     - python >=3.8
     - click
-    - gitpython
-    - pyyaml
-    - requests
-    - requests-cache
-    - tabulate
+    - filetype
+    - galaxy-tool-util
     - git
-    - markdown >=3.3
-    - jsonschema >=3.0
+    - gitpython
     - jinja2
-    - rich >=13.3.1
-    - rich-click >=1.6.1
+    - jsonschema >=3.0
+    - markdown >=3.3
+    - packaging
+    - pillow
     - pre-commit
     - prompt_toolkit >=3.0.3
     - pytest >=7.0.0
     - pytest-workflow >=1.6.0
+    - pyyaml
     - questionary >=1.8.0
-    - packaging
-    - galaxy-tool-util
     - refgenie
-    - filetype
+    - requests
+    - requests-cache
+    - rich >=13.3.1
+    - rich-click >=1.6.1
+    - tabulate
+    - trogon
+    - nextflow >=23.04.0
+    - nf-test
 
 test:
   commands:
     - nf-core --help
+    - nextflow help
+    - nf-test version
 
 about:
   home: http://nf-co.re/
   license: MIT
+  license_family: MIT
   summary: 'Python package with helper tools for the nf-core community.'
 
 extra:
diff --git a/recipes/nf-test/meta.yaml b/recipes/nf-test/meta.yaml
index 77ced7e081ec0..280a8e4979ddd 100644
--- a/recipes/nf-test/meta.yaml
+++ b/recipes/nf-test/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.7.3" %}
+{% set version = "0.8.4" %}
 
 
 package:
@@ -6,12 +6,14 @@ package:
   version: {{ version }}
 
 build:
-  number: 2
+  number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage("nf-test", max_pin="x.x") }}
 
 source:
   url: https://github.com/askimed/nf-test/releases/download/v{{version}}/nf-test-{{version}}.tar.gz
-  sha256: ec2030296c1412f9f293b46179a40ee803fbbb052e6833e892640353c979dc5c
+  sha256: 8023bbe6e354294fba514493f423f80e75869e5daf7e51f4cb808877fdc84381
 
 requirements:
   host:
diff --git a/recipes/ngs-bits/meta.yaml b/recipes/ngs-bits/meta.yaml
index cbac5d063c01a..36577f5655986 100755
--- a/recipes/ngs-bits/meta.yaml
+++ b/recipes/ngs-bits/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "2023_06" %}
+{% set version = "2024_02" %}
 
 package:
   name: ngs-bits
@@ -6,10 +6,12 @@ package:
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage("ngs-bits", max_pin=None) }}
 
 source:
   url: https://github.com/imgag/ngs-bits/releases/download/{{ version }}/ngs-bits-{{ version }}.tgz
-  sha256: 2b2583f43e9e16a98e45e670ab2d8c195f0c233abf7eaaa0c9b126d8c10d07a3
+  sha256: 29f95f6e4e5c1cd57e463730312464bb2b632758c46abd5e1531a1d75a26a782
 
 requirements:
   build:
diff --git a/recipes/ngs-chew/meta.yaml b/recipes/ngs-chew/meta.yaml
index bf1055c64d5b6..f6df359de7c2e 100644
--- a/recipes/ngs-chew/meta.yaml
+++ b/recipes/ngs-chew/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.8.1" %}
-{% set sha256 = "28b27061a6f418ef8dd805ce3135d4f8210521bab8c65a44b5c61092f2a999e8" %}
+{% set version = "0.9.4" %}
+{% set sha256 = "7ea102e92268d9db07f9361735da6da1ebf433dbd5bff0766f8a9aaf6b93c279" %}
 
 package:
   name: ngs-chew
@@ -14,15 +14,18 @@ build:
   noarch: python
   entry_points:
     - ngs-chew = chew.cli:cli
-  script: python -m pip install . -vv
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
+  run_exports:
+    - {{ pin_subpackage('ngs-chew', max_pin="x.x") }}
 
 requirements:
   host:
-    - python >=3.7
+    - python >=3.8
     - pip
   run:
-    - python >=3.7
+    - python >=3.8
     - attrs
+    - cattrs
     - click
     - logzero
     - numpy
@@ -34,6 +37,7 @@ requirements:
     - vcfpy
     - bcftools
     - samtools
+    - pyarrow
 
 test:
   commands:
diff --git a/recipes/ngs-tools/meta.yaml b/recipes/ngs-tools/meta.yaml
index 522256cf43ea2..8bd5ac25b52c8 100644
--- a/recipes/ngs-tools/meta.yaml
+++ b/recipes/ngs-tools/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "ngs-tools" %}
-{% set version = "1.8.3" %}
+{% set version = "1.8.5" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: "c50e36105654cdea14b4c7971994a3e710157663aaf0fd72c4d83a486f12cdb0"
+  sha256: "380e236a101c5b1ac3c0fcdbcc908a210179b6ef2a93fbea9f4eb0ec2edc1de0"
 
 build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/ngscheckmate/build.sh b/recipes/ngscheckmate/build.sh
index 073b19272c596..8f8192ec8f0d1 100644
--- a/recipes/ngscheckmate/build.sh
+++ b/recipes/ngscheckmate/build.sh
@@ -22,6 +22,25 @@ export NCM_HOME=$PREFIX/NGSCheckMate
 python $PREFIX/NGSCheckMate/ncm_fastq.py "\$@"
 EOF
 
+cat << EOF > $PREFIX/bin/vaf_ncm.py
+#!/usr/bin/env bash
+
+export NCM_HOME=$PREFIX/NGSCheckMate
+python $PREFIX/NGSCheckMate/vaf_ncm.py "\$@"
+EOF
+
+ln -s $PREFIX/NGSCheckMate/ngscheckmate_fastq $PREFIX/bin/ngscheckmate_fastq
+
+cat << EOF > $PREFIX/bin/makesnvpattern.pl
+#!/usr/bin/env bash
+
+export NCM_HOME=$PREFIX/NGSCheckMate
+perl $PREFIX/NGSCheckMate/patterngenerator/makesnvpattern.pl "\$@"
+EOF
+
+#/usr/bin/perl is hardcoded, need to point to env
+sed -i.bak 's/perl/env perl/g' $PREFIX/NGSCheckMate/patterngenerator/*.pl
+
 cat << EOF > $PREFIX/NGSCheckMate/ncm.conf
 SAMTOOLS=samtools
 BCFTOOLS=bcftools
diff --git a/recipes/ngscheckmate/conda_build_config.yaml b/recipes/ngscheckmate/conda_build_config.yaml
new file mode 100644
index 0000000000000..28db21c4c2fd0
--- /dev/null
+++ b/recipes/ngscheckmate/conda_build_config.yaml
@@ -0,0 +1,10 @@
+python:
+  - 2.7
+python_impl:
+  - cpython
+numpy:
+  - 1.21
+zip_keys:
+  - python
+  - python_impl
+  - numpy
diff --git a/recipes/ngscheckmate/meta.yaml b/recipes/ngscheckmate/meta.yaml
index 847fc9abbfdeb..6d394d70d7dbe 100644
--- a/recipes/ngscheckmate/meta.yaml
+++ b/recipes/ngscheckmate/meta.yaml
@@ -1,33 +1,44 @@
+{% set name = "ngscheckmate" %}
+
 package:
-  name: ngscheckmate
-  version: 1.0.0
+  name: {{ name }}
+  version: 1.0.1
 
 source:
-  url: https://github.com/parklab/NGSCheckMate/archive/8ea2c043896adf9bbd1dc5bb2136f3a1dab9b445.zip
-  md5: 4c4e34abc8c4851d29661f5f0cc13b49
+  url: https://github.com/parklab/NGSCheckMate/archive/ef7a38c51dadbd4ef5b6b6db60775f239926f0a8.zip
+  md5: 42d4578e02a81e4e55857f126ae719af
 
 build:
-  number: 4
+  number: 1
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
 
 requirements:
   host:
-    - python 2.7.18
-    - R 4.1
-    - samtools 1.14
+    - python =2.7
+    - r-base >=4
+    - perl
+    - samtools
     - bcftools
+    - bowtie
   run:
-    - python 2.7.18
-    - R 4.1
-    - samtools 1.14
+    - python =2.7
+    - r-base >=4
+    - perl
+    - samtools
     - bcftools
-
+    - bowtie
 test:
   commands:
     - ncm.py -h
     - ncm_fastq.py -h
+    - vaf_ncm.py -h
+    - ngscheckmate_fastq
+    - makesnvpattern.pl
 
 about:
   home: https://github.com/parklab/NGSCheckMate
   license: MIT
   summary: Software package for identifying next generation sequencing (NGS) data files from the same individual.
+  description: This version is built from a pull request which fixes a handful of known bugs.
diff --git a/recipes/ngsderive/meta.yaml b/recipes/ngsderive/meta.yaml
index adf393e28596f..4add6145f016a 100644
--- a/recipes/ngsderive/meta.yaml
+++ b/recipes/ngsderive/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "ngsderive" %}
-{% set version = "3.2.1" %}
+{% set version = "3.3.2" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,21 +7,23 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: ca44c1f299e42ad10cff465d24a683a142a93efa82acc0487f58afa367e6ed1f
+  sha256: 46fa9c5f926ab1c35a0ff66325b41546501b2b2868d59305f4071ff7a6a36b9a
 
 build:
   number: 0
   script: "{{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   host:
     - pip
-    - python >=3.8, <3.10
+    - python >=3.8
     - poetry >=1.3.2
   run:
     - colorlog >=6.6.0
-    - pysam >=0.18
+    - pysam >=0.21
     - pytabix >=0.1
     - python >=3.8, <3.10
     - rstr >=3.0.0
diff --git a/recipes/ngsngs/build.sh b/recipes/ngsngs/build.sh
index 6d5aa0d678b59..2089fb2f5c862 100644
--- a/recipes/ngsngs/build.sh
+++ b/recipes/ngsngs/build.sh
@@ -4,3 +4,6 @@ mkdir -p "${PREFIX}"/bin
 make clean
 make CFLAGS="${CFLAGS}" CPPFLAGS="${CPPFLAGS}" prefix="${PREFIX}" CC="${CC}" CXX="${CXX} -L${PREFIX}/lib" LDFLAGS+="-lz -lpthread ${LDFLAGS} -L${PREFIX}/lib"
 mv ./ngsngs "${PREFIX}"/bin/
+
+make --directory misc CFLAGS="${CFLAGS}" CPPFLAGS="${CPPFLAGS}" prefix="${PREFIX}" CC="${CC}" CXX="${CXX} -L${PREFIX}/lib" LDFLAGS+="-lz -lpthread ${LDFLAGS} -L${PREFIX}/lib"
+mv ./misc/LenConvert  ./misc/MetaMisConvert  ./misc/MisConvert  ./misc/QualConvert  ./misc/RandRef  ./misc/RandVar  ./misc/VCFtoBED "${PREFIX}"/bin/
diff --git a/recipes/ngsngs/meta.yaml b/recipes/ngsngs/meta.yaml
index 01410b4502ea5..665ebd620608a 100644
--- a/recipes/ngsngs/meta.yaml
+++ b/recipes/ngsngs/meta.yaml
@@ -1,17 +1,20 @@
-{% set version = "0.9.0" %}
-{% set sha256 = "6d74c224ce614831fb9f8c5795302b15f968fde97c5290d8b10e89876f49bb53" %}
+{% set name = "ngsngs" %}
+{% set version = "0.9.2" %}
+{% set sha256 = "eca9a4e4e79662a4e897a3d5a1e5047e318e81ef27892a4b5da6f31cffbd25fe" %}
 
 package:
-  name: ngsngs
+  name: {{ name }}
   version: {{ version }}
 
 source:
-  url: https://github.com/rahenriksen/ngsngs/archive/refs/tags/v{{ version}}.tar.gz
+  url: https://github.com/rahenriksen/ngsngs/archive/refs/tags/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
 
 build:
-  number: 1
+  number: 0
   skip: false
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   build:
diff --git a/recipes/niemagraphgen/build.sh b/recipes/niemagraphgen/build.sh
new file mode 100644
index 0000000000000..1fd3513e1fa7d
--- /dev/null
+++ b/recipes/niemagraphgen/build.sh
@@ -0,0 +1,5 @@
+#!/bin/bash
+
+mkdir -p ${PREFIX}/bin
+make CXX="$CXX" INCLUDE="-I${PREFIX}/include" RELEASEFLAGS="-Wall -pedantic -std=c++11 -DOUTFAVITES -DNGG_UINT_32 -O3 $LDFLAGS"
+cp ngg_* ${PREFIX}/bin
diff --git a/recipes/niemagraphgen/meta.yaml b/recipes/niemagraphgen/meta.yaml
new file mode 100644
index 0000000000000..12c498054c879
--- /dev/null
+++ b/recipes/niemagraphgen/meta.yaml
@@ -0,0 +1,47 @@
+{% set version = "1.0.6" %}
+
+package:
+  name: niemagraphgen
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('niemagraphgen', max_pin="x.x.x") }}
+
+source:
+  url: https://github.com/niemasd/NiemaGraphGen/archive/refs/tags/{{ version }}.tar.gz
+  sha256: 65789a45c126cbeb385e5b36550b3c3ed2588943b2e1ac779d433fd3026974c1
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - make
+
+about:
+  home: https://github.com/niemasd/NiemaGraphGen
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE
+  summary: Niema's C++ implementations of graph generators
+  dev_url: https://github.com/niemasd/NiemaGraphGen
+
+test:
+  commands:
+    - ngg_barabasi_albert -h 2>&1 | grep "NiemaGraphGen"
+    - ngg_barbell -h 2>&1 | grep "NiemaGraphGen"
+    - ngg_complete -h 2>&1 | grep "NiemaGraphGen"
+    - ngg_cycle -h 2>&1 | grep "NiemaGraphGen"
+    - ngg_empty -h 2>&1 | grep "NiemaGraphGen"
+    - ngg_erdos_renyi -h 2>&1 | grep "NiemaGraphGen"
+    - ngg_newman_watts_strogatz -h 2>&1 | grep "NiemaGraphGen"
+    - ngg_path -h 2>&1 | grep "NiemaGraphGen"
+    - ngg_ring_lattice -h 2>&1 | grep "NiemaGraphGen"
+
+extra:
+  identifiers:
+    - biotools:niemagraphgen
+    - doi:10.46471/gigabyte.37
+  maintainers:
+    - niemasd
diff --git a/recipes/nii2dcm/001-version_info.patch b/recipes/nii2dcm/001-version_info.patch
new file mode 100644
index 0000000000000..b2c1cd02888fa
--- /dev/null
+++ b/recipes/nii2dcm/001-version_info.patch
@@ -0,0 +1,14 @@
+--- setup.py.org	2023-10-17 17:35:14.702458316 -0500
++++ setup.py	2023-10-17 17:46:27.269258824 -0500
+@@ -1,7 +1,8 @@
++import os
+ from setuptools import setup
+ from dunamai import Version, Style
+ 
+ setup(
+     name="nii2dcm",
+-    version=Version.from_git().serialize(metadata=False, style=Style.SemVer),
+-)
+\ No newline at end of file
++    version=Version.parse(os.getenv('PKG_VERSION')).serialize(metadata=False, style=Style.SemVer),
++)
diff --git a/recipes/nii2dcm/LICENSE b/recipes/nii2dcm/LICENSE
new file mode 100644
index 0000000000000..dc300fc34755d
--- /dev/null
+++ b/recipes/nii2dcm/LICENSE
@@ -0,0 +1,23 @@
+BSD 3-Clause License
+
+Redistribution and use in source and binary forms, with or without modification, are permitted provided that the
+following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following
+disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following
+disclaimer in the documentation and/or other materials provided with the distribution.
+
+3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote
+products derived from this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES,
+INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
+THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+Copyright (c) 2021-2022 Tom Roberts. All rights reserved.
\ No newline at end of file
diff --git a/recipes/nii2dcm/meta.yaml b/recipes/nii2dcm/meta.yaml
new file mode 100644
index 0000000000000..225058d98c41c
--- /dev/null
+++ b/recipes/nii2dcm/meta.yaml
@@ -0,0 +1,54 @@
+{% set name = "nii2dcm" %}
+{% set version = "0.1.2" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/nii2dcm-{{ version }}.tar.gz
+  sha256: 49630e1ec1ee0ce3f999158e8da68c8492e27593d5742ed826b7ce88c1d42be0
+  patches:
+    - 001-version_info.patch
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('nii2dcm', max_pin="x") }}
+
+requirements:
+  host:
+    - python <3.11
+    - setuptools
+    - dunamai
+    - pip
+  run:
+    - python <3.11
+    - numpy ==1.23.2
+    - matplotlib-base ==3.6.2
+    - nibabel ==5.0.0
+    - pydicom ==2.3.0
+    - twine ==4.0.2
+    - dunamai ==1.18.0
+
+test:
+  imports:
+    - nii2dcm
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/tomaroberts/nii2dcm
+  dev_url: https://github.com/tomaroberts/nii2dcm
+  summary: 'nii2dcm: NIfTI to DICOM creation with Python'
+  license: BSD-3
+  license_family: BSD
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - acaprez
diff --git a/recipes/ninja-nj/meta.yaml b/recipes/ninja-nj/meta.yaml
index ffb7658886c5c..b5b89c0856430 100644
--- a/recipes/ninja-nj/meta.yaml
+++ b/recipes/ninja-nj/meta.yaml
@@ -10,12 +10,14 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 2
-  skip: True  # [osx]
+  number: 3
+  run_exports:
+    - {{ pin_subpackage("ninja-nj", max_pin="x") }}
 
 requirements:
   build:
     - {{ compiler('cxx') }}
+    - llvm-openmp  # [osx]
     - make
 
 test:
diff --git a/recipes/nmrml2isa/meta.yaml b/recipes/nmrml2isa/meta.yaml
index 7cbf85da35d69..2dbd4c565d29e 100644
--- a/recipes/nmrml2isa/meta.yaml
+++ b/recipes/nmrml2isa/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "nmrml2isa" %}
-{% set version = "0.3.1" %}
+{% set version = "0.3.3" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,23 +7,25 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 5bae79e717eaed9a0147324adae7dcb54d435f80683e7a1b2cec032a2803f97c
+  sha256: 87269827b36b7df01f8909e4148c67ad585d8441432135fe41bf8abf4c41e99f
 
 build:
   number: 0
   noarch: python
   entry_points:
     - nmrml2isa = nmrml2isa.parsing:run
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('nmrml2isa', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - python >=3
+    - python <3.10
   run:
     - openpyxl
     - pronto
-    - python >=3
+    - python <3.10
     - lxml
     - six
 
@@ -35,5 +37,6 @@ test:
 
 about:
   home: http://github.com/ISA-tools/nmrml2isa
-  license: GNU General Public License v3 (GPLv3)
+  license: GPL-3.0-or-later
+  license_family: GPL3
   summary: 'nmrml2isa - nmrML to ISA-Tab parsing tool'
diff --git a/recipes/noah-cli/meta.yaml b/recipes/noah-cli/meta.yaml
new file mode 100644
index 0000000000000..b0c7ba5b7f69c
--- /dev/null
+++ b/recipes/noah-cli/meta.yaml
@@ -0,0 +1,51 @@
+{% set version = "0.2.0" %}
+
+package:
+  name: noah-cli
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/n/noah-cli/noah_cli-{{ version }}.tar.gz
+  sha256: 8406a8e5e397cfb4b29e64d0b1c342c3069aed5ebde4ef604e32c24689331e4f
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv
+  number: 0
+  entry_points:
+    - noah = noah_cli.app.main:app
+  run_exports:
+    - {{ pin_subpackage('noah-cli', max_pin='x.x') }}
+
+requirements:
+  host:
+    - python >=3.11,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.11.0,<4.0.0
+    - typer >=0.9.0,<0.10.0
+    - fabric >=3.1.0,<4.0.0
+    - pysradb >=2.1.0,<3.0.0
+    - requests >=2.31.0,<3.0.0
+    - dacite >=1.8.0,<2.0.0
+    - ordered-set >=4.1.0,<5.0.0
+    - ruamel.yaml >=0.17.0,<0.18.0
+
+test:
+  commands:
+    - noah --version
+
+about:
+  home: https://github.com/raymond-u/noah-cli
+  summary: a project management tool for reproducible, portable, and streamlined bioinformatics analysis
+  description: >
+    Noah is a project management tool specifically designed for bioinformatics projects.
+    It enables reproducible analysis of large datasets, making it effortless to share and collaborate with others.
+  license: MIT
+  license_file: LICENSE
+  dev_url: https://github.com/raymond-u/noah-cli
+
+extra:
+  recipe-maintainers:
+    - raymond-u
diff --git a/recipes/nohuman/build.sh b/recipes/nohuman/build.sh
new file mode 100644
index 0000000000000..98067b0d04217
--- /dev/null
+++ b/recipes/nohuman/build.sh
@@ -0,0 +1,17 @@
+#!/bin/bash
+set -ex
+
+RUST_BACKTRACE=full
+
+if [ "$(uname)" == "Darwin" ]; then
+    # apparently the HOME variable isn't set correctly, and circle ci output indicates the following as the home directory
+    export HOME="/Users/distiller"
+    export HOME=`pwd`
+    echo "HOME is $HOME"
+
+    # according to https://github.com/rust-lang/cargo/issues/2422#issuecomment-198458960 removing circle ci default configuration solves cargo trouble downloading crates
+    #git config --global --unset url.ssh://git@github.com.insteadOf
+fi
+
+cargo install -v --locked --root "$PREFIX" --path .
+"$STRIP" "$PREFIX/bin/nohuman"
\ No newline at end of file
diff --git a/recipes/nohuman/meta.yaml b/recipes/nohuman/meta.yaml
new file mode 100644
index 0000000000000..5256c6bbd5606
--- /dev/null
+++ b/recipes/nohuman/meta.yaml
@@ -0,0 +1,39 @@
+{% set version = "0.1.0" %}
+{% set name = "nohuman" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/mbhall88/{{ name }}/archive/{{ version }}.tar.gz
+  sha256: 6133ece500c543303f2ba3819b4f8d5d4f04778b04d942c5a9bd840a4ce6e41a
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('nohuman', max_pin="x.x") }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+  host:
+    - rust >=1.70
+    - openssl
+  run:
+    - kraken2 =2.1
+
+test:
+  commands:
+    - nohuman --help
+
+about:
+  home: https://github.com/mbhall88/nohuman
+  license: MIT
+  license_family: MIT
+  summary: Remove human reads from a sequencing run
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - mbhall88
diff --git a/recipes/noise2read/meta.yaml b/recipes/noise2read/meta.yaml
new file mode 100644
index 0000000000000..1563783acf521
--- /dev/null
+++ b/recipes/noise2read/meta.yaml
@@ -0,0 +1,55 @@
+{% set name = "noise2read" %}
+{% set version = "0.3.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/noise2read-{{ version }}.tar.gz
+  sha256: d259167a34cf99776cc3ad968c2d0aafb720b781854b09e33737c2927f34a713
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('noise2read', max_pin='x.x') }}
+    
+requirements:
+  host:
+    - python >=3.8
+    - setuptools
+    - wheel
+    - pip
+  run:
+    - python >=3.8
+    - biopython ==1.79
+    - xgboost ==1.6.1
+    - xlsxwriter >=3.0.3
+    - scikit-learn >=1.1.1
+    - networkx ==2.8.5
+    - pandas >=1.4.3
+    - optuna >=3.1.1
+    - matplotlib-base >=3.5.2
+    - mpire >=2.8.0
+    - editdistance >=0.6.0
+    - imbalanced-learn >=0.9.1
+    - seqtk
+    - bcool
+
+test:
+  commands:
+    - noise2read -v
+
+about:
+  home: https://github.com/Jappy0/noise2read
+  summary: Turn noise to read
+  description: >
+      noise2read, originated in a computable rule translated from PCR erring mechanism that: a rare read is erroneous if it has a neighboring read of high abundance, turns erroneous reads into their original state without bringing up any non-existing sequences into the short read set(&lt 300bp) including DNA and RNA sequencing (DNA/RNA-seq), small RNA, unique molecular identifiers (UMI) and amplicon sequencing data.
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - Jappy0
diff --git a/recipes/nordic/LICENSE b/recipes/nordic/LICENSE
new file mode 100644
index 0000000000000..08f13e3f57263
--- /dev/null
+++ b/recipes/nordic/LICENSE
@@ -0,0 +1,21 @@
+MIT License
+
+Copyright © 2023 Clémence Réda
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.
\ No newline at end of file
diff --git a/recipes/nordic/build.sh b/recipes/nordic/build.sh
new file mode 100644
index 0000000000000..887d0d743b9ae
--- /dev/null
+++ b/recipes/nordic/build.sh
@@ -0,0 +1,23 @@
+#!/usr/bin/env bash
+
+cd ${SRC_DIR}"/MaBoSS-2.0/engine/src/"
+
+make install \
+    CC="${CC}" \
+    CXX="${CXX}" \
+    CFLAGS="${CFLAGS}" \
+    CXXFLAGS="${CXXFLAGS}" \
+    LDFLAGS="${LDFLAGS}" \
+    prefix="${PREFIX}"
+
+cd ${SRC_DIR}"/mpbn-3.3/"
+
+"${PYTHON}" -m pip install --no-deps --no-build-isolation . -vvv
+
+cd ${SRC_DIR}"/bonesis-0.5.7/"
+
+"${PYTHON}" -m pip install --no-deps --no-build-isolation . -vvv
+
+cd ${SRC_DIR}"/NORDic-2.4.4/"
+
+"${PYTHON}" -m pip install --no-deps --no-build-isolation . -vvv
\ No newline at end of file
diff --git a/recipes/nordic/meta.yaml b/recipes/nordic/meta.yaml
new file mode 100644
index 0000000000000..7fe723c149cf6
--- /dev/null
+++ b/recipes/nordic/meta.yaml
@@ -0,0 +1,92 @@
+{% set name = "nordic" %}
+{% set ucname = "NORDic" %}
+{% set version = "2.4.4" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  - url: "https://github.com/sysbio-curie/MaBoSS-env-2.0/archive/refs/heads/master.tar.gz"
+    sha256: 5952813f3c38e10bbc2f0d4bbb91936bc738c47bcf9941da298cea3bfb753d19
+    folder: "MaBoSS-2.0"
+  - url: "https://files.pythonhosted.org/packages/f8/ff/4b5fd3c1968c99d59972da395c926be65e601d7306602ec6cc39c418e24f/mpbn-3.3.tar.gz"
+    sha256: 8831531216d94616e7303925c4571bfc40f5d750b33b69d0155edc8404223831
+    folder: "mpbn-3.3"
+  - url: "https://files.pythonhosted.org/packages/fb/c9/8fa247a95e6d6b7c650f2d4f879e6027fbb9eeca2aaba8d97f999bfadcfd/bonesis-0.5.7.tar.gz"
+    sha256: 0ccef4daa089347f7fd4ac8355f7ab3a8eecf63757e6bf000cc66b7c54bfdb0a
+    folder: "bonesis-0.5.7"
+  - url: "https://files.pythonhosted.org/packages/f3/9b/817e2004a1e7f798b5f361dc04d28d7b99657cc469f26abde2d9095fd1e4/{{ ucname }}-{{ version }}.tar.gz"
+    sha256: 01a5d9fbc95c603e46e916a734dd6eecdc20dff914d36c91009337d62488d525
+    folder: "{{ ucname }}-{{ version }}"
+
+build:
+  number: 0
+  skip: True  # [py < 38]
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - flex
+    - bison
+    - make
+  host:
+    - python
+    - pip
+    - clingo >=5.6.1
+    - cmappy
+    - scikit-learn
+    - graphviz
+    - matplotlib-base
+    - numpy >=1.22.4
+    - omnipath >=1.0.6
+    - openpyxl >=3.0.10
+    - pandas >=1.5.1
+    - qnorm >=0.5.1
+    - quadprog >=0.1.11
+    - scipy >=1.6.2
+    - seaborn >=0.12.1
+    - tqdm >=4.62.3
+  run:
+    - python
+    - clingo >=5.6.1
+    - cmappy
+    - scikit-learn
+    - graphviz
+    - matplotlib-base
+    - numpy >=1.22.4
+    - omnipath >=1.0.6
+    - openpyxl >=3.0.10
+    - pandas >=1.5.1
+    - qnorm >=0.5.1
+    - quadprog >=0.1.11
+    - scipy >=1.6.2
+    - seaborn >=0.12.1
+    - tqdm >=4.62.3
+
+test:
+  imports:
+    - NORDic
+    - NORDic.NORDic_DR
+    - NORDic.NORDic_DS
+    - NORDic.NORDic_NI
+    - NORDic.NORDic_PMR
+    - NORDic.UTILS
+
+about:
+  home: "https://github.com/clreda/NORDic"
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "NORDic: a Network-Oriented package for the Repurposing of Drugs"
+  doc_url: "https://github.com/clreda/NORDic/blob/main/README.md"
+  dev_url: "https://github.com/clreda/NORDic"
+
+extra:
+  recipe-maintainers:
+    - clreda
+  identifiers:
+    - doi:10.5281/zenodo.7239047
diff --git a/recipes/novoplasty/meta.yaml b/recipes/novoplasty/meta.yaml
index 5d0532eb0cbde..ded9b844226cf 100644
--- a/recipes/novoplasty/meta.yaml
+++ b/recipes/novoplasty/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "NOVOPlasty" %}
-{% set version = "4.3.1" %}
+{% set version = "4.3.5" %}
 
 package:
   name: {{ name|lower }}
@@ -7,17 +7,18 @@ package:
 
 source:
   url: https://github.com/ndierckx/NOVOPlasty/archive/NOVOPlasty{{ version }}.tar.gz
-  sha256: 5349cc88166fac205c26168a092ee94e94f8d4df518759152e3f0a485a46a488
+  sha256: b2555f2c10548a882d397a3c18d59d41905c0693ecf417d63aee24d5ac738d36
 
 build:
-  number: 1
+  number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('novoplasty', max_pin="x") }}
 
 requirements:
   host:
     - perl
     - perl-module-build
-
   run:
     - perl
 
@@ -30,10 +31,11 @@ test:
 about:
   home: https://github.com/ndierckx/NOVOPlasty
   summary: "The organelle assembler and heteroplasmy caller"
-  license: other
+  license: Other
   license_file: LICENSE
   description: |
     NOVOPlasty is a de novo assembler for short circular genomes.
+
 extra:
   identifiers:
     - doi:10.1093/nar/gkw955
diff --git a/recipes/npstructures/meta.yaml b/recipes/npstructures/meta.yaml
index 1fb0444528d9a..23603ad6caf31 100644
--- a/recipes/npstructures/meta.yaml
+++ b/recipes/npstructures/meta.yaml
@@ -1,19 +1,20 @@
-{% set version = "0.2.12" %}
-
+{% set version = "0.2.18" %}
+{% set name = "npstructures" %}
 package:
-  name: npstructures
+  name: {{ name }}
   version: {{ version }}
 
 source:
-  url: https://github.com/bionumpy/npstructures/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 7b61229a13a50a62465b68238cc5f1c5a87c20155c8a112e346de59f4946eb5d
+  url: https://github.com/bionumpy/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 3048064ceb3394d57d36de4ba388633083613fb0ee26fb90967d5539997c08df
 
 
 build:
   noarch: python
   number: 0
   script: {{ PYTHON }} -m pip install . --no-deps -vv
-
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/nrpys/LICENSE.txt b/recipes/nrpys/LICENSE.txt
index 006fae0d49aa9..dba13ed2ddf78 100644
--- a/recipes/nrpys/LICENSE.txt
+++ b/recipes/nrpys/LICENSE.txt
@@ -1,4539 +1,661 @@
-
-
-
-
-
-
-
-<!DOCTYPE html>
-<html lang="en" data-color-mode="auto" data-light-theme="light" data-dark-theme="dark" data-a11y-animated-images="system">
-  <head>
-    <meta charset="utf-8">
-  <link rel="dns-prefetch" href="https://github.githubassets.com">
-  <link rel="dns-prefetch" href="https://avatars.githubusercontent.com">
-  <link rel="dns-prefetch" href="https://github-cloud.s3.amazonaws.com">
-  <link rel="dns-prefetch" href="https://user-images.githubusercontent.com/">
-  <link rel="preconnect" href="https://github.githubassets.com" crossorigin>
-  <link rel="preconnect" href="https://avatars.githubusercontent.com">
-
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-</svg>
-      <svg title="Project" aria-label="Project" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-project js-jump-to-octicon-project d-none flex-shrink-0">
-    <path d="M1.75 0h12.5C15.216 0 16 .784 16 1.75v12.5A1.75 1.75 0 0 1 14.25 16H1.75A1.75 1.75 0 0 1 0 14.25V1.75C0 .784.784 0 1.75 0ZM1.5 1.75v12.5c0 .138.112.25.25.25h12.5a.25.25 0 0 0 .25-.25V1.75a.25.25 0 0 0-.25-.25H1.75a.25.25 0 0 0-.25.25ZM11.75 3a.75.75 0 0 1 .75.75v7.5a.75.75 0 0 1-1.5 0v-7.5a.75.75 0 0 1 .75-.75Zm-8.25.75a.75.75 0 0 1 1.5 0v5.5a.75.75 0 0 1-1.5 0ZM8 3a.75.75 0 0 1 .75.75v3.5a.75.75 0 0 1-1.5 0v-3.5A.75.75 0 0 1 8 3Z"></path>
-</svg>
-      <svg title="Search" aria-label="Search" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-search js-jump-to-octicon-search d-none flex-shrink-0">
-    <path d="M10.68 11.74a6 6 0 0 1-7.922-8.982 6 6 0 0 1 8.982 7.922l3.04 3.04a.749.749 0 0 1-.326 1.275.749.749 0 0 1-.734-.215ZM11.5 7a4.499 4.499 0 1 0-8.997 0A4.499 4.499 0 0 0 11.5 7Z"></path>
-</svg>
-    </div>
-
-    <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28">
-
-    <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target">
-    </div>
-
-    <div class="border rounded-2 flex-shrink-0 color-bg-subtle px-1 color-fg-muted ml-1 f6 d-none js-jump-to-badge-search">
-      <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this user">
-        In this user
-      </span>
-      <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub">
-        All GitHub
-      </span>
-      <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span>
-    </div>
-
-    <div aria-hidden="true" class="border rounded-2 flex-shrink-0 color-bg-subtle px-1 color-fg-muted ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump">
-      Jump to
-      <span class="d-inline-block ml-1 v-align-middle">↵</span>
-    </div>
-  </a>
-</li>
-
-  
-
-<li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-global-search d-none" role="option">
-  <a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href="" data-item-type="global_search">
-    <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none">
-      <svg title="Repository" aria-label="Repository" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-repo js-jump-to-octicon-repo d-none flex-shrink-0">
-    <path d="M2 2.5A2.5 2.5 0 0 1 4.5 0h8.75a.75.75 0 0 1 .75.75v12.5a.75.75 0 0 1-.75.75h-2.5a.75.75 0 0 1 0-1.5h1.75v-2h-8a1 1 0 0 0-.714 1.7.75.75 0 1 1-1.072 1.05A2.495 2.495 0 0 1 2 11.5Zm10.5-1h-8a1 1 0 0 0-1 1v6.708A2.486 2.486 0 0 1 4.5 9h8ZM5 12.25a.25.25 0 0 1 .25-.25h3.5a.25.25 0 0 1 .25.25v3.25a.25.25 0 0 1-.4.2l-1.45-1.087a.249.249 0 0 0-.3 0L5.4 15.7a.25.25 0 0 1-.4-.2Z"></path>
-</svg>
-      <svg title="Project" aria-label="Project" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-project js-jump-to-octicon-project d-none flex-shrink-0">
-    <path d="M1.75 0h12.5C15.216 0 16 .784 16 1.75v12.5A1.75 1.75 0 0 1 14.25 16H1.75A1.75 1.75 0 0 1 0 14.25V1.75C0 .784.784 0 1.75 0ZM1.5 1.75v12.5c0 .138.112.25.25.25h12.5a.25.25 0 0 0 .25-.25V1.75a.25.25 0 0 0-.25-.25H1.75a.25.25 0 0 0-.25.25ZM11.75 3a.75.75 0 0 1 .75.75v7.5a.75.75 0 0 1-1.5 0v-7.5a.75.75 0 0 1 .75-.75Zm-8.25.75a.75.75 0 0 1 1.5 0v5.5a.75.75 0 0 1-1.5 0ZM8 3a.75.75 0 0 1 .75.75v3.5a.75.75 0 0 1-1.5 0v-3.5A.75.75 0 0 1 8 3Z"></path>
-</svg>
-      <svg title="Search" aria-label="Search" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-search js-jump-to-octicon-search d-none flex-shrink-0">
-    <path d="M10.68 11.74a6 6 0 0 1-7.922-8.982 6 6 0 0 1 8.982 7.922l3.04 3.04a.749.749 0 0 1-.326 1.275.749.749 0 0 1-.734-.215ZM11.5 7a4.499 4.499 0 1 0-8.997 0A4.499 4.499 0 0 0 11.5 7Z"></path>
-</svg>
-    </div>
-
-    <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28">
-
-    <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target">
-    </div>
-
-    <div class="border rounded-2 flex-shrink-0 color-bg-subtle px-1 color-fg-muted ml-1 f6 d-none js-jump-to-badge-search">
-      <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository">
-        In this repository
-      </span>
-      <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub">
-        All GitHub
-      </span>
-      <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span>
-    </div>
-
-    <div aria-hidden="true" class="border rounded-2 flex-shrink-0 color-bg-subtle px-1 color-fg-muted ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump">
-      Jump to
-      <span class="d-inline-block ml-1 v-align-middle">↵</span>
-    </div>
-  </a>
-</li>
-
-
-</ul>
-
-          </div>
-      </label>
-</form>  </div>
-</div>
-
-            </div>
-
-          <div class="position-relative mr-lg-3 d-lg-inline-block">
-            <a href="/login?return_to=https%3A%2F%2Fgithub.com%2Fkblin%2Fnrpys%2Fblob%2Fmain%2FLICENSE.txt"
-              class="HeaderMenu-link HeaderMenu-link--sign-in flex-shrink-0 no-underline d-block d-lg-inline-block border border-lg-0 rounded rounded-lg-0 p-2 p-lg-0"
-              data-hydro-click="{&quot;event_type&quot;:&quot;authentication.click&quot;,&quot;payload&quot;:{&quot;location_in_page&quot;:&quot;site header menu&quot;,&quot;repository_id&quot;:null,&quot;auth_type&quot;:&quot;SIGN_UP&quot;,&quot;originating_url&quot;:&quot;https://github.com/kblin/nrpys/blob/main/LICENSE.txt&quot;,&quot;user_id&quot;:null}}" data-hydro-click-hmac="5eca8648d26188dc68a637631e78f4e71c72fc9518ae4d0985105c075830022e"
-              data-ga-click="(Logged out) Header, clicked Sign in, text:sign-in">
-              Sign in
-            </a>
-          </div>
-
-            <a href="/signup?ref_cta=Sign+up&amp;ref_loc=header+logged+out&amp;ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E%2Fblob%2Fshow&amp;source=header-repo&amp;source_repo=kblin%2Fnrpys"
-              class="HeaderMenu-link HeaderMenu-link--sign-up flex-shrink-0 d-none d-lg-inline-block no-underline border color-border-default rounded px-2 py-1"
-              data-hydro-click="{&quot;event_type&quot;:&quot;authentication.click&quot;,&quot;payload&quot;:{&quot;location_in_page&quot;:&quot;site header menu&quot;,&quot;repository_id&quot;:null,&quot;auth_type&quot;:&quot;SIGN_UP&quot;,&quot;originating_url&quot;:&quot;https://github.com/kblin/nrpys/blob/main/LICENSE.txt&quot;,&quot;user_id&quot;:null}}" data-hydro-click-hmac="5eca8648d26188dc68a637631e78f4e71c72fc9518ae4d0985105c075830022e"
-              data-analytics-event="{&quot;category&quot;:&quot;Sign up&quot;,&quot;action&quot;:&quot;click to sign up for account&quot;,&quot;label&quot;:&quot;ref_page:/&lt;user-name&gt;/&lt;repo-name&gt;/blob/show;ref_cta:Sign up;ref_loc:header logged out&quot;}"
-            >
-              Sign up
-            </a>
-        </div>
-      </div>
-    </div>
-  </div>
-</header>
-
-    </div>
-
-  <div id="start-of-content" class="show-on-focus"></div>
-
-
-
-
-
-
-
-    <div id="js-flash-container" data-turbo-replace>
-
-
-
-
-
-  <template class="js-flash-template">
-    
-<div class="flash flash-full   {{ className }}">
-  <div class="px-2" >
-    <button autofocus class="flash-close js-flash-close" type="button" aria-label="Dismiss this message">
-      <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-x">
-    <path d="M3.72 3.72a.75.75 0 0 1 1.06 0L8 6.94l3.22-3.22a.749.749 0 0 1 1.275.326.749.749 0 0 1-.215.734L9.06 8l3.22 3.22a.749.749 0 0 1-.326 1.275.749.749 0 0 1-.734-.215L8 9.06l-3.22 3.22a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042L6.94 8 3.72 4.78a.75.75 0 0 1 0-1.06Z"></path>
-</svg>
-    </button>
-    <div aria-atomic="true" role="alert" class="js-flash-alert">
-      
-      <div>{{ message }}</div>
-
-    </div>
-  </div>
-</div>
-  </template>
-</div>
-
-
-    
-    <include-fragment class="js-notification-shelf-include-fragment" data-base-src="https://github.com/notifications/beta/shelf"></include-fragment>
-
-
-
-
-
-
-  <div
-    class="application-main "
-    data-commit-hovercards-enabled
-    data-discussion-hovercards-enabled
-    data-issue-and-pr-hovercards-enabled
-  >
-        <div itemscope itemtype="http://schema.org/SoftwareSourceCode" class="">
-    <main id="js-repo-pjax-container" >
-      
-  
-
-
-    
-
-
-
-
-
-
-  
-  <div id="repository-container-header"  class="pt-3 hide-full-screen" style="background-color: var(--color-page-header-bg);" data-turbo-replace>
-
-      <div class="d-flex flex-wrap flex-justify-end mb-3  px-3 px-md-4 px-lg-5" style="gap: 1rem;">
-
-        <div class="flex-auto min-width-0 width-fit mr-3">
-            
-  <div class=" d-flex flex-wrap flex-items-center wb-break-word f3 text-normal">
-      <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-repo color-fg-muted mr-2">
-    <path d="M2 2.5A2.5 2.5 0 0 1 4.5 0h8.75a.75.75 0 0 1 .75.75v12.5a.75.75 0 0 1-.75.75h-2.5a.75.75 0 0 1 0-1.5h1.75v-2h-8a1 1 0 0 0-.714 1.7.75.75 0 1 1-1.072 1.05A2.495 2.495 0 0 1 2 11.5Zm10.5-1h-8a1 1 0 0 0-1 1v6.708A2.486 2.486 0 0 1 4.5 9h8ZM5 12.25a.25.25 0 0 1 .25-.25h3.5a.25.25 0 0 1 .25.25v3.25a.25.25 0 0 1-.4.2l-1.45-1.087a.249.249 0 0 0-.3 0L5.4 15.7a.25.25 0 0 1-.4-.2Z"></path>
-</svg>
-    
-    <span class="author flex-self-stretch" itemprop="author">
-      <a class="url fn" rel="author" data-hovercard-type="user" data-hovercard-url="/users/kblin/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="/kblin">
-        kblin
-</a>    </span>
-    <span class="mx-1 flex-self-stretch color-fg-muted">/</span>
-    <strong itemprop="name" class="mr-2 flex-self-stretch">
-      <a data-pjax="#repo-content-pjax-container" data-turbo-frame="repo-content-turbo-frame" href="/kblin/nrpys">nrpys</a>
-    </strong>
-
-    <span></span><span class="Label Label--secondary v-align-middle mr-1">Public</span>
-  </div>
-
-
-        </div>
-
-        <div id="repository-details-container" data-turbo-replace>
-            <ul class="pagehead-actions flex-shrink-0 d-none d-md-inline" style="padding: 2px 0;">
-    
-      
-
-  <li>
-            <a href="/login?return_to=%2Fkblin%2Fnrpys" rel="nofollow" data-hydro-click="{&quot;event_type&quot;:&quot;authentication.click&quot;,&quot;payload&quot;:{&quot;location_in_page&quot;:&quot;notification subscription menu watch&quot;,&quot;repository_id&quot;:null,&quot;auth_type&quot;:&quot;LOG_IN&quot;,&quot;originating_url&quot;:&quot;https://github.com/kblin/nrpys/blob/main/LICENSE.txt&quot;,&quot;user_id&quot;:null}}" data-hydro-click-hmac="e23b5558e35d4b19aec7a3a963429643ba751473d9ac7d086db81618960694f8" aria-label="You must be signed in to change notification settings" data-view-component="true" class="tooltipped tooltipped-s btn-sm btn">    <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-bell mr-2">
-    <path d="M8 16a2 2 0 0 0 1.985-1.75c.017-.137-.097-.25-.235-.25h-3.5c-.138 0-.252.113-.235.25A2 2 0 0 0 8 16ZM3 5a5 5 0 0 1 10 0v2.947c0 .05.015.098.042.139l1.703 2.555A1.519 1.519 0 0 1 13.482 13H2.518a1.516 1.516 0 0 1-1.263-2.36l1.703-2.554A.255.255 0 0 0 3 7.947Zm5-3.5A3.5 3.5 0 0 0 4.5 5v2.947c0 .346-.102.683-.294.97l-1.703 2.556a.017.017 0 0 0-.003.01l.001.006c0 .002.002.004.004.006l.006.004.007.001h10.964l.007-.001.006-.004.004-.006.001-.007a.017.017 0 0 0-.003-.01l-1.703-2.554a1.745 1.745 0 0 1-.294-.97V5A3.5 3.5 0 0 0 8 1.5Z"></path>
-</svg>Notifications
-</a>  </li>
-
-  <li>
-          <a icon="repo-forked" id="fork-button" href="/login?return_to=%2Fkblin%2Fnrpys" rel="nofollow" data-hydro-click="{&quot;event_type&quot;:&quot;authentication.click&quot;,&quot;payload&quot;:{&quot;location_in_page&quot;:&quot;repo details fork button&quot;,&quot;repository_id&quot;:605116390,&quot;auth_type&quot;:&quot;LOG_IN&quot;,&quot;originating_url&quot;:&quot;https://github.com/kblin/nrpys/blob/main/LICENSE.txt&quot;,&quot;user_id&quot;:null}}" data-hydro-click-hmac="80176a587ebc68442976f6434d090f2ec80330270b913813abaee1a86c479c55" data-view-component="true" class="btn-sm btn">    <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-repo-forked mr-2">
-    <path d="M5 5.372v.878c0 .414.336.75.75.75h4.5a.75.75 0 0 0 .75-.75v-.878a2.25 2.25 0 1 1 1.5 0v.878a2.25 2.25 0 0 1-2.25 2.25h-1.5v2.128a2.251 2.251 0 1 1-1.5 0V8.5h-1.5A2.25 2.25 0 0 1 3.5 6.25v-.878a2.25 2.25 0 1 1 1.5 0ZM5 3.25a.75.75 0 1 0-1.5 0 .75.75 0 0 0 1.5 0Zm6.75.75a.75.75 0 1 0 0-1.5.75.75 0 0 0 0 1.5Zm-3 8.75a.75.75 0 1 0-1.5 0 .75.75 0 0 0 1.5 0Z"></path>
-</svg>Fork
-    <span id="repo-network-counter" data-pjax-replace="true" data-turbo-replace="true" title="0" data-view-component="true" class="Counter">0</span>
-</a>
-  </li>
-
-  <li>
-        <div data-view-component="true" class="BtnGroup d-flex">
-        <a href="/login?return_to=%2Fkblin%2Fnrpys" rel="nofollow" data-hydro-click="{&quot;event_type&quot;:&quot;authentication.click&quot;,&quot;payload&quot;:{&quot;location_in_page&quot;:&quot;star button&quot;,&quot;repository_id&quot;:605116390,&quot;auth_type&quot;:&quot;LOG_IN&quot;,&quot;originating_url&quot;:&quot;https://github.com/kblin/nrpys/blob/main/LICENSE.txt&quot;,&quot;user_id&quot;:null}}" data-hydro-click-hmac="2a3feaf3e5fa27c48d8f8abec00c5a53031be90d6ee89fe60776c371793a31fe" aria-label="You must be signed in to star a repository" data-view-component="true" class="tooltipped tooltipped-s btn-sm btn BtnGroup-item">    <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-star v-align-text-bottom d-inline-block mr-2">
-    <path d="M8 .25a.75.75 0 0 1 .673.418l1.882 3.815 4.21.612a.75.75 0 0 1 .416 1.279l-3.046 2.97.719 4.192a.751.751 0 0 1-1.088.791L8 12.347l-3.766 1.98a.75.75 0 0 1-1.088-.79l.72-4.194L.818 6.374a.75.75 0 0 1 .416-1.28l4.21-.611L7.327.668A.75.75 0 0 1 8 .25Zm0 2.445L6.615 5.5a.75.75 0 0 1-.564.41l-3.097.45 2.24 2.184a.75.75 0 0 1 .216.664l-.528 3.084 2.769-1.456a.75.75 0 0 1 .698 0l2.77 1.456-.53-3.084a.75.75 0 0 1 .216-.664l2.24-2.183-3.096-.45a.75.75 0 0 1-.564-.41L8 2.694Z"></path>
-</svg><span data-view-component="true" class="d-inline">
-          Star
-</span>          <span id="repo-stars-counter-star" aria-label="1 user starred this repository" data-singular-suffix="user starred this repository" data-plural-suffix="users starred this repository" data-turbo-replace="true" title="1" data-view-component="true" class="Counter js-social-count">1</span>
-</a>        <button disabled="disabled" aria-label="You must be signed in to add this repository to a list" type="button" data-view-component="true" class="btn-sm btn BtnGroup-item px-2">    <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-triangle-down">
-    <path d="m4.427 7.427 3.396 3.396a.25.25 0 0 0 .354 0l3.396-3.396A.25.25 0 0 0 11.396 7H4.604a.25.25 0 0 0-.177.427Z"></path>
-</svg>
-</button></div>
-  </li>
-
-
-    
-
-</ul>
-
-        </div>
-      </div>
-
-        <div id="responsive-meta-container" data-turbo-replace>
-</div>
-
-
-          <nav data-pjax="#js-repo-pjax-container" aria-label="Repository" data-view-component="true" class="js-repo-nav js-sidenav-container-pjax js-responsive-underlinenav overflow-hidden UnderlineNav px-3 px-md-4 px-lg-5">
-
-  <ul data-view-component="true" class="UnderlineNav-body list-style-none">
-      <li data-view-component="true" class="d-inline-flex">
-  <a id="code-tab" href="/kblin/nrpys" data-tab-item="i0code-tab" data-selected-links="repo_source repo_downloads repo_commits repo_releases repo_tags repo_branches repo_packages repo_deployments /kblin/nrpys" data-pjax="#repo-content-pjax-container" data-turbo-frame="repo-content-turbo-frame" data-hotkey="g c" data-analytics-event="{&quot;category&quot;:&quot;Underline navbar&quot;,&quot;action&quot;:&quot;Click tab&quot;,&quot;label&quot;:&quot;Code&quot;,&quot;target&quot;:&quot;UNDERLINE_NAV.TAB&quot;}" aria-current="page" data-view-component="true" class="UnderlineNav-item no-wrap js-responsive-underlinenav-item js-selected-navigation-item selected">
-    
-              <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-code UnderlineNav-octicon d-none d-sm-inline">
-    <path d="m11.28 3.22 4.25 4.25a.75.75 0 0 1 0 1.06l-4.25 4.25a.749.749 0 0 1-1.275-.326.749.749 0 0 1 .215-.734L13.94 8l-3.72-3.72a.749.749 0 0 1 .326-1.275.749.749 0 0 1 .734.215Zm-6.56 0a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042L2.06 8l3.72 3.72a.749.749 0 0 1-.326 1.275.749.749 0 0 1-.734-.215L.47 8.53a.75.75 0 0 1 0-1.06Z"></path>
-</svg>
-        <span data-content="Code">Code</span>
-          <span id="code-repo-tab-count" data-pjax-replace="" data-turbo-replace="" title="Not available" data-view-component="true" class="Counter"></span>
-
-
-    
-</a></li>
-      <li data-view-component="true" class="d-inline-flex">
-  <a id="issues-tab" href="/kblin/nrpys/issues" data-tab-item="i1issues-tab" data-selected-links="repo_issues repo_labels repo_milestones /kblin/nrpys/issues" data-pjax="#repo-content-pjax-container" data-turbo-frame="repo-content-turbo-frame" data-hotkey="g i" data-analytics-event="{&quot;category&quot;:&quot;Underline navbar&quot;,&quot;action&quot;:&quot;Click tab&quot;,&quot;label&quot;:&quot;Issues&quot;,&quot;target&quot;:&quot;UNDERLINE_NAV.TAB&quot;}" data-view-component="true" class="UnderlineNav-item no-wrap js-responsive-underlinenav-item js-selected-navigation-item">
-    
-              <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-issue-opened UnderlineNav-octicon d-none d-sm-inline">
-    <path d="M8 9.5a1.5 1.5 0 1 0 0-3 1.5 1.5 0 0 0 0 3Z"></path><path d="M8 0a8 8 0 1 1 0 16A8 8 0 0 1 8 0ZM1.5 8a6.5 6.5 0 1 0 13 0 6.5 6.5 0 0 0-13 0Z"></path>
-</svg>
-        <span data-content="Issues">Issues</span>
-          <span id="issues-repo-tab-count" data-pjax-replace="" data-turbo-replace="" title="0" hidden="hidden" data-view-component="true" class="Counter">0</span>
-
-
-    
-</a></li>
-      <li data-view-component="true" class="d-inline-flex">
-  <a id="pull-requests-tab" href="/kblin/nrpys/pulls" data-tab-item="i2pull-requests-tab" data-selected-links="repo_pulls checks /kblin/nrpys/pulls" data-pjax="#repo-content-pjax-container" data-turbo-frame="repo-content-turbo-frame" data-hotkey="g p" data-analytics-event="{&quot;category&quot;:&quot;Underline navbar&quot;,&quot;action&quot;:&quot;Click tab&quot;,&quot;label&quot;:&quot;Pull requests&quot;,&quot;target&quot;:&quot;UNDERLINE_NAV.TAB&quot;}" data-view-component="true" class="UnderlineNav-item no-wrap js-responsive-underlinenav-item js-selected-navigation-item">
-    
-              <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-git-pull-request UnderlineNav-octicon d-none d-sm-inline">
-    <path d="M1.5 3.25a2.25 2.25 0 1 1 3 2.122v5.256a2.251 2.251 0 1 1-1.5 0V5.372A2.25 2.25 0 0 1 1.5 3.25Zm5.677-.177L9.573.677A.25.25 0 0 1 10 .854V2.5h1A2.5 2.5 0 0 1 13.5 5v5.628a2.251 2.251 0 1 1-1.5 0V5a1 1 0 0 0-1-1h-1v1.646a.25.25 0 0 1-.427.177L7.177 3.427a.25.25 0 0 1 0-.354ZM3.75 2.5a.75.75 0 1 0 0 1.5.75.75 0 0 0 0-1.5Zm0 9.5a.75.75 0 1 0 0 1.5.75.75 0 0 0 0-1.5Zm8.25.75a.75.75 0 1 0 1.5 0 .75.75 0 0 0-1.5 0Z"></path>
-</svg>
-        <span data-content="Pull requests">Pull requests</span>
-          <span id="pull-requests-repo-tab-count" data-pjax-replace="" data-turbo-replace="" title="0" hidden="hidden" data-view-component="true" class="Counter">0</span>
-
-
-    
-</a></li>
-      <li data-view-component="true" class="d-inline-flex">
-  <a id="actions-tab" href="/kblin/nrpys/actions" data-tab-item="i3actions-tab" data-selected-links="repo_actions /kblin/nrpys/actions" data-pjax="#repo-content-pjax-container" data-turbo-frame="repo-content-turbo-frame" data-hotkey="g a" data-analytics-event="{&quot;category&quot;:&quot;Underline navbar&quot;,&quot;action&quot;:&quot;Click tab&quot;,&quot;label&quot;:&quot;Actions&quot;,&quot;target&quot;:&quot;UNDERLINE_NAV.TAB&quot;}" data-view-component="true" class="UnderlineNav-item no-wrap js-responsive-underlinenav-item js-selected-navigation-item">
-    
-              <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-play UnderlineNav-octicon d-none d-sm-inline">
-    <path d="M8 0a8 8 0 1 1 0 16A8 8 0 0 1 8 0ZM1.5 8a6.5 6.5 0 1 0 13 0 6.5 6.5 0 0 0-13 0Zm4.879-2.773 4.264 2.559a.25.25 0 0 1 0 .428l-4.264 2.559A.25.25 0 0 1 6 10.559V5.442a.25.25 0 0 1 .379-.215Z"></path>
-</svg>
-        <span data-content="Actions">Actions</span>
-          <span id="actions-repo-tab-count" data-pjax-replace="" data-turbo-replace="" title="Not available" data-view-component="true" class="Counter"></span>
-
-
-    
-</a></li>
-      <li data-view-component="true" class="d-inline-flex">
-  <a id="projects-tab" href="/kblin/nrpys/projects" data-tab-item="i4projects-tab" data-selected-links="repo_projects new_repo_project repo_project /kblin/nrpys/projects" data-pjax="#repo-content-pjax-container" data-turbo-frame="repo-content-turbo-frame" data-hotkey="g b" data-analytics-event="{&quot;category&quot;:&quot;Underline navbar&quot;,&quot;action&quot;:&quot;Click tab&quot;,&quot;label&quot;:&quot;Projects&quot;,&quot;target&quot;:&quot;UNDERLINE_NAV.TAB&quot;}" data-view-component="true" class="UnderlineNav-item no-wrap js-responsive-underlinenav-item js-selected-navigation-item">
-    
-              <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-table UnderlineNav-octicon d-none d-sm-inline">
-    <path d="M0 1.75C0 .784.784 0 1.75 0h12.5C15.216 0 16 .784 16 1.75v12.5A1.75 1.75 0 0 1 14.25 16H1.75A1.75 1.75 0 0 1 0 14.25ZM6.5 6.5v8h7.75a.25.25 0 0 0 .25-.25V6.5Zm8-1.5V1.75a.25.25 0 0 0-.25-.25H6.5V5Zm-13 1.5v7.75c0 .138.112.25.25.25H5v-8ZM5 5V1.5H1.75a.25.25 0 0 0-.25.25V5Z"></path>
-</svg>
-        <span data-content="Projects">Projects</span>
-          <span id="projects-repo-tab-count" data-pjax-replace="" data-turbo-replace="" title="0" hidden="hidden" data-view-component="true" class="Counter">0</span>
-
-
-    
-</a></li>
-      <li data-view-component="true" class="d-inline-flex">
-  <a id="security-tab" href="/kblin/nrpys/security" data-tab-item="i5security-tab" data-selected-links="security overview alerts policy token_scanning code_scanning /kblin/nrpys/security" data-pjax="#repo-content-pjax-container" data-turbo-frame="repo-content-turbo-frame" data-hotkey="g s" data-analytics-event="{&quot;category&quot;:&quot;Underline navbar&quot;,&quot;action&quot;:&quot;Click tab&quot;,&quot;label&quot;:&quot;Security&quot;,&quot;target&quot;:&quot;UNDERLINE_NAV.TAB&quot;}" data-view-component="true" class="UnderlineNav-item no-wrap js-responsive-underlinenav-item js-selected-navigation-item">
-    
-              <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-shield UnderlineNav-octicon d-none d-sm-inline">
-    <path d="M7.467.133a1.748 1.748 0 0 1 1.066 0l5.25 1.68A1.75 1.75 0 0 1 15 3.48V7c0 1.566-.32 3.182-1.303 4.682-.983 1.498-2.585 2.813-5.032 3.855a1.697 1.697 0 0 1-1.33 0c-2.447-1.042-4.049-2.357-5.032-3.855C1.32 10.182 1 8.566 1 7V3.48a1.75 1.75 0 0 1 1.217-1.667Zm.61 1.429a.25.25 0 0 0-.153 0l-5.25 1.68a.25.25 0 0 0-.174.238V7c0 1.358.275 2.666 1.057 3.86.784 1.194 2.121 2.34 4.366 3.297a.196.196 0 0 0 .154 0c2.245-.956 3.582-2.104 4.366-3.298C13.225 9.666 13.5 8.36 13.5 7V3.48a.251.251 0 0 0-.174-.237l-5.25-1.68ZM8.75 4.75v3a.75.75 0 0 1-1.5 0v-3a.75.75 0 0 1 1.5 0ZM9 10.5a1 1 0 1 1-2 0 1 1 0 0 1 2 0Z"></path>
-</svg>
-        <span data-content="Security">Security</span>
-          <include-fragment src="/kblin/nrpys/security/overall-count" accept="text/fragment+html"></include-fragment>
-
-    
-</a></li>
-      <li data-view-component="true" class="d-inline-flex">
-  <a id="insights-tab" href="/kblin/nrpys/pulse" data-tab-item="i6insights-tab" data-selected-links="repo_graphs repo_contributors dependency_graph dependabot_updates pulse people community /kblin/nrpys/pulse" data-pjax="#repo-content-pjax-container" data-turbo-frame="repo-content-turbo-frame" data-analytics-event="{&quot;category&quot;:&quot;Underline navbar&quot;,&quot;action&quot;:&quot;Click tab&quot;,&quot;label&quot;:&quot;Insights&quot;,&quot;target&quot;:&quot;UNDERLINE_NAV.TAB&quot;}" data-view-component="true" class="UnderlineNav-item no-wrap js-responsive-underlinenav-item js-selected-navigation-item">
-    
-              <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-graph UnderlineNav-octicon d-none d-sm-inline">
-    <path d="M1.5 1.75V13.5h13.75a.75.75 0 0 1 0 1.5H.75a.75.75 0 0 1-.75-.75V1.75a.75.75 0 0 1 1.5 0Zm14.28 2.53-5.25 5.25a.75.75 0 0 1-1.06 0L7 7.06 4.28 9.78a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042l3.25-3.25a.75.75 0 0 1 1.06 0L10 7.94l4.72-4.72a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042Z"></path>
-</svg>
-        <span data-content="Insights">Insights</span>
-          <span id="insights-repo-tab-count" data-pjax-replace="" data-turbo-replace="" title="Not available" data-view-component="true" class="Counter"></span>
-
-
-    
-</a></li>
-</ul>
-    <div style="visibility:hidden;" data-view-component="true" class="UnderlineNav-actions js-responsive-underlinenav-overflow position-absolute pr-3 pr-md-4 pr-lg-5 right-0">      <details data-view-component="true" class="details-overlay details-reset position-relative">
-  <summary role="button" data-view-component="true">          <div class="UnderlineNav-item mr-0 border-0">
-            <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-kebab-horizontal">
-    <path d="M8 9a1.5 1.5 0 1 0 0-3 1.5 1.5 0 0 0 0 3ZM1.5 9a1.5 1.5 0 1 0 0-3 1.5 1.5 0 0 0 0 3Zm13 0a1.5 1.5 0 1 0 0-3 1.5 1.5 0 0 0 0 3Z"></path>
-</svg>
-            <span class="sr-only">More</span>
-          </div>
-</summary>
-  <details-menu role="menu" data-view-component="true" class="dropdown-menu dropdown-menu-sw">          <ul>
-              <li data-menu-item="i0code-tab" hidden>
-                <a role="menuitem" class="js-selected-navigation-item selected dropdown-item" aria-current="page" data-selected-links="repo_source repo_downloads repo_commits repo_releases repo_tags repo_branches repo_packages repo_deployments /kblin/nrpys" href="/kblin/nrpys">
-                  Code
-</a>              </li>
-              <li data-menu-item="i1issues-tab" hidden>
-                <a role="menuitem" class="js-selected-navigation-item dropdown-item" data-selected-links="repo_issues repo_labels repo_milestones /kblin/nrpys/issues" href="/kblin/nrpys/issues">
-                  Issues
-</a>              </li>
-              <li data-menu-item="i2pull-requests-tab" hidden>
-                <a role="menuitem" class="js-selected-navigation-item dropdown-item" data-selected-links="repo_pulls checks /kblin/nrpys/pulls" href="/kblin/nrpys/pulls">
-                  Pull requests
-</a>              </li>
-              <li data-menu-item="i3actions-tab" hidden>
-                <a role="menuitem" class="js-selected-navigation-item dropdown-item" data-selected-links="repo_actions /kblin/nrpys/actions" href="/kblin/nrpys/actions">
-                  Actions
-</a>              </li>
-              <li data-menu-item="i4projects-tab" hidden>
-                <a role="menuitem" class="js-selected-navigation-item dropdown-item" data-selected-links="repo_projects new_repo_project repo_project /kblin/nrpys/projects" href="/kblin/nrpys/projects">
-                  Projects
-</a>              </li>
-              <li data-menu-item="i5security-tab" hidden>
-                <a role="menuitem" class="js-selected-navigation-item dropdown-item" data-selected-links="security overview alerts policy token_scanning code_scanning /kblin/nrpys/security" href="/kblin/nrpys/security">
-                  Security
-</a>              </li>
-              <li data-menu-item="i6insights-tab" hidden>
-                <a role="menuitem" class="js-selected-navigation-item dropdown-item" data-selected-links="repo_graphs repo_contributors dependency_graph dependabot_updates pulse people community /kblin/nrpys/pulse" href="/kblin/nrpys/pulse">
-                  Insights
-</a>              </li>
-          </ul>
-</details-menu>
-</details></div>
-</nav>
-
-  </div>
-
-  
-
-
-
-<turbo-frame id="repo-content-turbo-frame" target="_top" data-turbo-action="advance" class="">
-    <div id="repo-content-pjax-container" class="repository-content " >
-    
-
-
-    
-      
-  <div class="clearfix container-xl px-3 px-md-4 px-lg-5 mt-4">
-    
-    
-<div >
-  
-
-  
-
-
-
-    
-<a class="d-none js-permalink-shortcut" data-hotkey="y" href="/kblin/nrpys/blob/21b91b7663c88019ef3887553324195be6f2b552/LICENSE.txt">Permalink</a>
-
-<div class="d-flex flex-items-start flex-shrink-0 pb-3 flex-wrap flex-md-nowrap flex-justify-between flex-md-justify-start">
-  
-<div class="position-relative">
-  <details
-    class="js-branch-select-menu details-reset details-overlay mr-0 mb-0 "
-    id="branch-select-menu"
-    data-hydro-click-payload="{&quot;event_type&quot;:&quot;repository.click&quot;,&quot;payload&quot;:{&quot;target&quot;:&quot;REFS_SELECTOR_MENU&quot;,&quot;repository_id&quot;:605116390,&quot;originating_url&quot;:&quot;https://github.com/kblin/nrpys/blob/main/LICENSE.txt&quot;,&quot;user_id&quot;:null}}" data-hydro-click-hmac="ccc23768799fe6be7f0fa827dc8c3ace5415726370bba8e150e70a21abbbf603">
-    <summary class="btn css-truncate"
-            data-hotkey="w"
-            title="Switch branches or tags">
-      <svg text="gray" aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-git-branch">
-    <path d="M9.5 3.25a2.25 2.25 0 1 1 3 2.122V6A2.5 2.5 0 0 1 10 8.5H6a1 1 0 0 0-1 1v1.128a2.251 2.251 0 1 1-1.5 0V5.372a2.25 2.25 0 1 1 1.5 0v1.836A2.493 2.493 0 0 1 6 7h4a1 1 0 0 0 1-1v-.628A2.25 2.25 0 0 1 9.5 3.25Zm-6 0a.75.75 0 1 0 1.5 0 .75.75 0 0 0-1.5 0Zm8.25-.75a.75.75 0 1 0 0 1.5.75.75 0 0 0 0-1.5ZM4.25 12a.75.75 0 1 0 0 1.5.75.75 0 0 0 0-1.5Z"></path>
-</svg>
-      <span class="css-truncate-target" data-menu-button>main</span>
-      <span class="dropdown-caret"></span>
-    </summary>
-
-    
-<div class="SelectMenu">
-  <div class="SelectMenu-modal">
-    <header class="SelectMenu-header">
-      <span class="SelectMenu-title">Switch branches/tags</span>
-      <button class="SelectMenu-closeButton" type="button" data-toggle-for="branch-select-menu"><svg aria-label="Close menu" aria-hidden="false" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-x">
-    <path d="M3.72 3.72a.75.75 0 0 1 1.06 0L8 6.94l3.22-3.22a.749.749 0 0 1 1.275.326.749.749 0 0 1-.215.734L9.06 8l3.22 3.22a.749.749 0 0 1-.326 1.275.749.749 0 0 1-.734-.215L8 9.06l-3.22 3.22a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042L6.94 8 3.72 4.78a.75.75 0 0 1 0-1.06Z"></path>
-</svg></button>
-    </header>
-
-    <input-demux data-action="tab-container-change:input-demux#storeInput tab-container-changed:input-demux#updateInput">
-      <tab-container class="d-flex flex-column js-branches-tags-tabs" style="min-height: 0;">
-        <div class="SelectMenu-filter">
-          <input data-target="input-demux.source"
-                 id="context-commitish-filter-field"
-                 class="SelectMenu-input form-control"
-                 aria-owns="ref-list-branches"
-                 data-controls-ref-menu-id="ref-list-branches"
-                 autofocus
-                 autocomplete="off"
-                 aria-label="Filter branches/tags"
-                 placeholder="Filter branches/tags"
-                 type="text"
-          >
-        </div>
-
-        <div class="SelectMenu-tabs" role="tablist" data-target="input-demux.control" >
-          <button class="SelectMenu-tab" type="button" role="tab" aria-selected="true">Branches</button>
-          <button class="SelectMenu-tab" type="button" role="tab">Tags</button>
-        </div>
-
-        <div role="tabpanel" id="ref-list-branches" data-filter-placeholder="Filter branches/tags" tabindex="" class="d-flex flex-column flex-auto overflow-auto">
-          <ref-selector
-            type="branch"
-            data-targets="input-demux.sinks"
-            data-action="
-              input-entered:ref-selector#inputEntered
-              tab-selected:ref-selector#tabSelected
-              focus-list:ref-selector#focusFirstListMember
-            "
-            query-endpoint="/kblin/nrpys/refs"
-            
-            cache-key="v0:1677179019.688648"
-            current-committish="bWFpbg=="
-            default-branch="bWFpbg=="
-            name-with-owner="a2JsaW4vbnJweXM="
-            prefetch-on-mouseover
-          >
-
-            <template data-target="ref-selector.fetchFailedTemplate">
-              <div class="SelectMenu-message" data-index="{{ index }}">Could not load branches</div>
-            </template>
-
-              <template data-target="ref-selector.noMatchTemplate">
-    <div class="SelectMenu-message">Nothing to show</div>
-</template>
-
-
-            <div data-target="ref-selector.listContainer" role="menu" class="SelectMenu-list " data-turbo-frame="repo-content-turbo-frame">
-              <div class="SelectMenu-loading pt-3 pb-0 overflow-hidden" aria-label="Menu is loading">
-                <svg style="box-sizing: content-box; color: var(--color-icon-primary);" width="32" height="32" viewBox="0 0 16 16" fill="none" data-view-component="true" class="anim-rotate">
-  <circle cx="8" cy="8" r="7" stroke="currentColor" stroke-opacity="0.25" stroke-width="2" vector-effect="non-scaling-stroke" />
-  <path d="M15 8a7.002 7.002 0 00-7-7" stroke="currentColor" stroke-width="2" stroke-linecap="round" vector-effect="non-scaling-stroke" />
-</svg>
-              </div>
-            </div>
-
-              
-
-<template data-target="ref-selector.itemTemplate">
-  <a href="https://github.com/kblin/nrpys/blob/{{ urlEncodedRefName }}/LICENSE.txt" class="SelectMenu-item" role="menuitemradio" rel="nofollow" aria-checked="{{ isCurrent }}" data-index="{{ index }}" >
-    <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-check SelectMenu-icon SelectMenu-icon--check">
-    <path d="M13.78 4.22a.75.75 0 0 1 0 1.06l-7.25 7.25a.75.75 0 0 1-1.06 0L2.22 9.28a.751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018L6 10.94l6.72-6.72a.75.75 0 0 1 1.06 0Z"></path>
-</svg>
-    <span class="flex-1 css-truncate css-truncate-overflow {{ isFilteringClass }}">{{ refName }}</span>
-    <span hidden="{{ isNotDefault }}" class="Label Label--secondary flex-self-start">default</span>
-  </a>
-</template>
-
-
-              <footer class="SelectMenu-footer"><a href="/kblin/nrpys/branches">View all branches</a></footer>
-          </ref-selector>
-
-        </div>
-
-        <div role="tabpanel" id="tags-menu" data-filter-placeholder="Find a tag" tabindex="" hidden class="d-flex flex-column flex-auto overflow-auto">
-          <ref-selector
-            type="tag"
-            data-action="
-              input-entered:ref-selector#inputEntered
-              tab-selected:ref-selector#tabSelected
-              focus-list:ref-selector#focusFirstListMember
-            "
-            data-targets="input-demux.sinks"
-            query-endpoint="/kblin/nrpys/refs"
-            cache-key="v0:1677179019.688648"
-            current-committish="bWFpbg=="
-            default-branch="bWFpbg=="
-            name-with-owner="a2JsaW4vbnJweXM="
-          >
-
-            <template data-target="ref-selector.fetchFailedTemplate">
-              <div class="SelectMenu-message" data-index="{{ index }}">Could not load tags</div>
-            </template>
-
-            <template data-target="ref-selector.noMatchTemplate">
-              <div class="SelectMenu-message" data-index="{{ index }}">Nothing to show</div>
-            </template>
-
-              
-
-<template data-target="ref-selector.itemTemplate">
-  <a href="https://github.com/kblin/nrpys/blob/{{ urlEncodedRefName }}/LICENSE.txt" class="SelectMenu-item" role="menuitemradio" rel="nofollow" aria-checked="{{ isCurrent }}" data-index="{{ index }}" >
-    <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-check SelectMenu-icon SelectMenu-icon--check">
-    <path d="M13.78 4.22a.75.75 0 0 1 0 1.06l-7.25 7.25a.75.75 0 0 1-1.06 0L2.22 9.28a.751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018L6 10.94l6.72-6.72a.75.75 0 0 1 1.06 0Z"></path>
-</svg>
-    <span class="flex-1 css-truncate css-truncate-overflow {{ isFilteringClass }}">{{ refName }}</span>
-    <span hidden="{{ isNotDefault }}" class="Label Label--secondary flex-self-start">default</span>
-  </a>
-</template>
-
-
-            <div data-target="ref-selector.listContainer" role="menu" class="SelectMenu-list" data-turbo-frame="repo-content-turbo-frame">
-              <div class="SelectMenu-loading pt-3 pb-0 overflow-hidden" aria-label="Menu is loading">
-                <svg style="box-sizing: content-box; color: var(--color-icon-primary);" width="32" height="32" viewBox="0 0 16 16" fill="none" data-view-component="true" class="anim-rotate">
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-          <td id="L50" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="50"></td>
-          <td id="LC50" class="blob-code blob-code-inner js-file-line">  An older license, called the Affero General Public License and</td>
-        </tr>
-        <tr>
-          <td id="L51" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="51"></td>
-          <td id="LC51" class="blob-code blob-code-inner js-file-line">published by Affero, was designed to accomplish similar goals.  This is</td>
-        </tr>
-        <tr>
-          <td id="L52" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="52"></td>
-          <td id="LC52" class="blob-code blob-code-inner js-file-line">a different license, not a version of the Affero GPL, but Affero has</td>
-        </tr>
-        <tr>
-          <td id="L53" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="53"></td>
-          <td id="LC53" class="blob-code blob-code-inner js-file-line">released a new version of the Affero GPL which permits relicensing under</td>
-        </tr>
-        <tr>
-          <td id="L54" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="54"></td>
-          <td id="LC54" class="blob-code blob-code-inner js-file-line">this license.</td>
-        </tr>
-        <tr>
-          <td id="L55" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="55"></td>
-          <td id="LC55" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L56" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="56"></td>
-          <td id="LC56" class="blob-code blob-code-inner js-file-line">  The precise terms and conditions for copying, distribution and</td>
-        </tr>
-        <tr>
-          <td id="L57" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="57"></td>
-          <td id="LC57" class="blob-code blob-code-inner js-file-line">modification follow.</td>
-        </tr>
-        <tr>
-          <td id="L58" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="58"></td>
-          <td id="LC58" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L59" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="59"></td>
-          <td id="LC59" class="blob-code blob-code-inner js-file-line">                       TERMS AND CONDITIONS</td>
-        </tr>
-        <tr>
-          <td id="L60" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="60"></td>
-          <td id="LC60" class="blob-code blob-code-inner js-file-line">
-</td>
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-        <tr>
-          <td id="L61" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="61"></td>
-          <td id="LC61" class="blob-code blob-code-inner js-file-line">  0. Definitions.</td>
-        </tr>
-        <tr>
-          <td id="L62" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="62"></td>
-          <td id="LC62" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L63" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="63"></td>
-          <td id="LC63" class="blob-code blob-code-inner js-file-line">  &quot;This License&quot; refers to version 3 of the GNU Affero General Public License.</td>
-        </tr>
-        <tr>
-          <td id="L64" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="64"></td>
-          <td id="LC64" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L65" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="65"></td>
-          <td id="LC65" class="blob-code blob-code-inner js-file-line">  &quot;Copyright&quot; also means copyright-like laws that apply to other kinds of</td>
-        </tr>
-        <tr>
-          <td id="L66" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="66"></td>
-          <td id="LC66" class="blob-code blob-code-inner js-file-line">works, such as semiconductor masks.</td>
-        </tr>
-        <tr>
-          <td id="L67" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="67"></td>
-          <td id="LC67" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L68" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="68"></td>
-          <td id="LC68" class="blob-code blob-code-inner js-file-line">  &quot;The Program&quot; refers to any copyrightable work licensed under this</td>
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-        <tr>
-          <td id="L69" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="69"></td>
-          <td id="LC69" class="blob-code blob-code-inner js-file-line">License.  Each licensee is addressed as &quot;you&quot;.  &quot;Licensees&quot; and</td>
-        </tr>
-        <tr>
-          <td id="L70" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="70"></td>
-          <td id="LC70" class="blob-code blob-code-inner js-file-line">&quot;recipients&quot; may be individuals or organizations.</td>
-        </tr>
-        <tr>
-          <td id="L71" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="71"></td>
-          <td id="LC71" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L72" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="72"></td>
-          <td id="LC72" class="blob-code blob-code-inner js-file-line">  To &quot;modify&quot; a work means to copy from or adapt all or part of the work</td>
-        </tr>
-        <tr>
-          <td id="L73" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="73"></td>
-          <td id="LC73" class="blob-code blob-code-inner js-file-line">in a fashion requiring copyright permission, other than the making of an</td>
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-        <tr>
-          <td id="L74" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="74"></td>
-          <td id="LC74" class="blob-code blob-code-inner js-file-line">exact copy.  The resulting work is called a &quot;modified version&quot; of the</td>
-        </tr>
-        <tr>
-          <td id="L75" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="75"></td>
-          <td id="LC75" class="blob-code blob-code-inner js-file-line">earlier work or a work &quot;based on&quot; the earlier work.</td>
-        </tr>
-        <tr>
-          <td id="L76" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="76"></td>
-          <td id="LC76" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L77" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="77"></td>
-          <td id="LC77" class="blob-code blob-code-inner js-file-line">  A &quot;covered work&quot; means either the unmodified Program or a work based</td>
-        </tr>
-        <tr>
-          <td id="L78" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="78"></td>
-          <td id="LC78" class="blob-code blob-code-inner js-file-line">on the Program.</td>
-        </tr>
-        <tr>
-          <td id="L79" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="79"></td>
-          <td id="LC79" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L80" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="80"></td>
-          <td id="LC80" class="blob-code blob-code-inner js-file-line">  To &quot;propagate&quot; a work means to do anything with it that, without</td>
-        </tr>
-        <tr>
-          <td id="L81" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="81"></td>
-          <td id="LC81" class="blob-code blob-code-inner js-file-line">permission, would make you directly or secondarily liable for</td>
-        </tr>
-        <tr>
-          <td id="L82" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="82"></td>
-          <td id="LC82" class="blob-code blob-code-inner js-file-line">infringement under applicable copyright law, except executing it on a</td>
-        </tr>
-        <tr>
-          <td id="L83" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="83"></td>
-          <td id="LC83" class="blob-code blob-code-inner js-file-line">computer or modifying a private copy.  Propagation includes copying,</td>
-        </tr>
-        <tr>
-          <td id="L84" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="84"></td>
-          <td id="LC84" class="blob-code blob-code-inner js-file-line">distribution (with or without modification), making available to the</td>
-        </tr>
-        <tr>
-          <td id="L85" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="85"></td>
-          <td id="LC85" class="blob-code blob-code-inner js-file-line">public, and in some countries other activities as well.</td>
-        </tr>
-        <tr>
-          <td id="L86" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="86"></td>
-          <td id="LC86" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L87" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="87"></td>
-          <td id="LC87" class="blob-code blob-code-inner js-file-line">  To &quot;convey&quot; a work means any kind of propagation that enables other</td>
-        </tr>
-        <tr>
-          <td id="L88" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="88"></td>
-          <td id="LC88" class="blob-code blob-code-inner js-file-line">parties to make or receive copies.  Mere interaction with a user through</td>
-        </tr>
-        <tr>
-          <td id="L89" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="89"></td>
-          <td id="LC89" class="blob-code blob-code-inner js-file-line">a computer network, with no transfer of a copy, is not conveying.</td>
-        </tr>
-        <tr>
-          <td id="L90" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="90"></td>
-          <td id="LC90" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L91" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="91"></td>
-          <td id="LC91" class="blob-code blob-code-inner js-file-line">  An interactive user interface displays &quot;Appropriate Legal Notices&quot;</td>
-        </tr>
-        <tr>
-          <td id="L92" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="92"></td>
-          <td id="LC92" class="blob-code blob-code-inner js-file-line">to the extent that it includes a convenient and prominently visible</td>
-        </tr>
-        <tr>
-          <td id="L93" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="93"></td>
-          <td id="LC93" class="blob-code blob-code-inner js-file-line">feature that (1) displays an appropriate copyright notice, and (2)</td>
-        </tr>
-        <tr>
-          <td id="L94" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="94"></td>
-          <td id="LC94" class="blob-code blob-code-inner js-file-line">tells the user that there is no warranty for the work (except to the</td>
-        </tr>
-        <tr>
-          <td id="L95" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="95"></td>
-          <td id="LC95" class="blob-code blob-code-inner js-file-line">extent that warranties are provided), that licensees may convey the</td>
-        </tr>
-        <tr>
-          <td id="L96" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="96"></td>
-          <td id="LC96" class="blob-code blob-code-inner js-file-line">work under this License, and how to view a copy of this License.  If</td>
-        </tr>
-        <tr>
-          <td id="L97" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="97"></td>
-          <td id="LC97" class="blob-code blob-code-inner js-file-line">the interface presents a list of user commands or options, such as a</td>
-        </tr>
-        <tr>
-          <td id="L98" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="98"></td>
-          <td id="LC98" class="blob-code blob-code-inner js-file-line">menu, a prominent item in the list meets this criterion.</td>
-        </tr>
-        <tr>
-          <td id="L99" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="99"></td>
-          <td id="LC99" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L100" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="100"></td>
-          <td id="LC100" class="blob-code blob-code-inner js-file-line">  1. Source Code.</td>
-        </tr>
-        <tr>
-          <td id="L101" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="101"></td>
-          <td id="LC101" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L102" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="102"></td>
-          <td id="LC102" class="blob-code blob-code-inner js-file-line">  The &quot;source code&quot; for a work means the preferred form of the work</td>
-        </tr>
-        <tr>
-          <td id="L103" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="103"></td>
-          <td id="LC103" class="blob-code blob-code-inner js-file-line">for making modifications to it.  &quot;Object code&quot; means any non-source</td>
-        </tr>
-        <tr>
-          <td id="L104" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="104"></td>
-          <td id="LC104" class="blob-code blob-code-inner js-file-line">form of a work.</td>
-        </tr>
-        <tr>
-          <td id="L105" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="105"></td>
-          <td id="LC105" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L106" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="106"></td>
-          <td id="LC106" class="blob-code blob-code-inner js-file-line">  A &quot;Standard Interface&quot; means an interface that either is an official</td>
-        </tr>
-        <tr>
-          <td id="L107" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="107"></td>
-          <td id="LC107" class="blob-code blob-code-inner js-file-line">standard defined by a recognized standards body, or, in the case of</td>
-        </tr>
-        <tr>
-          <td id="L108" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="108"></td>
-          <td id="LC108" class="blob-code blob-code-inner js-file-line">interfaces specified for a particular programming language, one that</td>
-        </tr>
-        <tr>
-          <td id="L109" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="109"></td>
-          <td id="LC109" class="blob-code blob-code-inner js-file-line">is widely used among developers working in that language.</td>
-        </tr>
-        <tr>
-          <td id="L110" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="110"></td>
-          <td id="LC110" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L111" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="111"></td>
-          <td id="LC111" class="blob-code blob-code-inner js-file-line">  The &quot;System Libraries&quot; of an executable work include anything, other</td>
-        </tr>
-        <tr>
-          <td id="L112" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="112"></td>
-          <td id="LC112" class="blob-code blob-code-inner js-file-line">than the work as a whole, that (a) is included in the normal form of</td>
-        </tr>
-        <tr>
-          <td id="L113" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="113"></td>
-          <td id="LC113" class="blob-code blob-code-inner js-file-line">packaging a Major Component, but which is not part of that Major</td>
-        </tr>
-        <tr>
-          <td id="L114" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="114"></td>
-          <td id="LC114" class="blob-code blob-code-inner js-file-line">Component, and (b) serves only to enable use of the work with that</td>
-        </tr>
-        <tr>
-          <td id="L115" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="115"></td>
-          <td id="LC115" class="blob-code blob-code-inner js-file-line">Major Component, or to implement a Standard Interface for which an</td>
-        </tr>
-        <tr>
-          <td id="L116" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="116"></td>
-          <td id="LC116" class="blob-code blob-code-inner js-file-line">implementation is available to the public in source code form.  A</td>
-        </tr>
-        <tr>
-          <td id="L117" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="117"></td>
-          <td id="LC117" class="blob-code blob-code-inner js-file-line">&quot;Major Component&quot;, in this context, means a major essential component</td>
-        </tr>
-        <tr>
-          <td id="L118" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="118"></td>
-          <td id="LC118" class="blob-code blob-code-inner js-file-line">(kernel, window system, and so on) of the specific operating system</td>
-        </tr>
-        <tr>
-          <td id="L119" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="119"></td>
-          <td id="LC119" class="blob-code blob-code-inner js-file-line">(if any) on which the executable work runs, or a compiler used to</td>
-        </tr>
-        <tr>
-          <td id="L120" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="120"></td>
-          <td id="LC120" class="blob-code blob-code-inner js-file-line">produce the work, or an object code interpreter used to run it.</td>
-        </tr>
-        <tr>
-          <td id="L121" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="121"></td>
-          <td id="LC121" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L122" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="122"></td>
-          <td id="LC122" class="blob-code blob-code-inner js-file-line">  The &quot;Corresponding Source&quot; for a work in object code form means all</td>
-        </tr>
-        <tr>
-          <td id="L123" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="123"></td>
-          <td id="LC123" class="blob-code blob-code-inner js-file-line">the source code needed to generate, install, and (for an executable</td>
-        </tr>
-        <tr>
-          <td id="L124" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="124"></td>
-          <td id="LC124" class="blob-code blob-code-inner js-file-line">work) run the object code and to modify the work, including scripts to</td>
-        </tr>
-        <tr>
-          <td id="L125" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="125"></td>
-          <td id="LC125" class="blob-code blob-code-inner js-file-line">control those activities.  However, it does not include the work&#39;s</td>
-        </tr>
-        <tr>
-          <td id="L126" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="126"></td>
-          <td id="LC126" class="blob-code blob-code-inner js-file-line">System Libraries, or general-purpose tools or generally available free</td>
-        </tr>
-        <tr>
-          <td id="L127" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="127"></td>
-          <td id="LC127" class="blob-code blob-code-inner js-file-line">programs which are used unmodified in performing those activities but</td>
-        </tr>
-        <tr>
-          <td id="L128" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="128"></td>
-          <td id="LC128" class="blob-code blob-code-inner js-file-line">which are not part of the work.  For example, Corresponding Source</td>
-        </tr>
-        <tr>
-          <td id="L129" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="129"></td>
-          <td id="LC129" class="blob-code blob-code-inner js-file-line">includes interface definition files associated with source files for</td>
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-        <tr>
-          <td id="L130" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="130"></td>
-          <td id="LC130" class="blob-code blob-code-inner js-file-line">the work, and the source code for shared libraries and dynamically</td>
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-        <tr>
-          <td id="L131" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="131"></td>
-          <td id="LC131" class="blob-code blob-code-inner js-file-line">linked subprograms that the work is specifically designed to require,</td>
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-          <td id="L132" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="132"></td>
-          <td id="LC132" class="blob-code blob-code-inner js-file-line">such as by intimate data communication or control flow between those</td>
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-        <tr>
-          <td id="L133" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="133"></td>
-          <td id="LC133" class="blob-code blob-code-inner js-file-line">subprograms and other parts of the work.</td>
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-          <td id="L134" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="134"></td>
-          <td id="LC134" class="blob-code blob-code-inner js-file-line">
-</td>
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-        <tr>
-          <td id="L135" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="135"></td>
-          <td id="LC135" class="blob-code blob-code-inner js-file-line">  The Corresponding Source need not include anything that users</td>
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-        <tr>
-          <td id="L136" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="136"></td>
-          <td id="LC136" class="blob-code blob-code-inner js-file-line">can regenerate automatically from other parts of the Corresponding</td>
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-        <tr>
-          <td id="L137" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="137"></td>
-          <td id="LC137" class="blob-code blob-code-inner js-file-line">Source.</td>
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-        <tr>
-          <td id="L138" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="138"></td>
-          <td id="LC138" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L139" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="139"></td>
-          <td id="LC139" class="blob-code blob-code-inner js-file-line">  The Corresponding Source for a work in source code form is that</td>
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-        <tr>
-          <td id="L140" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="140"></td>
-          <td id="LC140" class="blob-code blob-code-inner js-file-line">same work.</td>
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-          <td id="L141" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="141"></td>
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-</td>
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-        <tr>
-          <td id="L142" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="142"></td>
-          <td id="LC142" class="blob-code blob-code-inner js-file-line">  2. Basic Permissions.</td>
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-          <td id="L143" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="143"></td>
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-</td>
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-        <tr>
-          <td id="L144" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="144"></td>
-          <td id="LC144" class="blob-code blob-code-inner js-file-line">  All rights granted under this License are granted for the term of</td>
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-          <td id="L145" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="145"></td>
-          <td id="LC145" class="blob-code blob-code-inner js-file-line">copyright on the Program, and are irrevocable provided the stated</td>
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-        <tr>
-          <td id="L146" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="146"></td>
-          <td id="LC146" class="blob-code blob-code-inner js-file-line">conditions are met.  This License explicitly affirms your unlimited</td>
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-        <tr>
-          <td id="L147" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="147"></td>
-          <td id="LC147" class="blob-code blob-code-inner js-file-line">permission to run the unmodified Program.  The output from running a</td>
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-        <tr>
-          <td id="L148" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="148"></td>
-          <td id="LC148" class="blob-code blob-code-inner js-file-line">covered work is covered by this License only if the output, given its</td>
-        </tr>
-        <tr>
-          <td id="L149" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="149"></td>
-          <td id="LC149" class="blob-code blob-code-inner js-file-line">content, constitutes a covered work.  This License acknowledges your</td>
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-        <tr>
-          <td id="L150" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="150"></td>
-          <td id="LC150" class="blob-code blob-code-inner js-file-line">rights of fair use or other equivalent, as provided by copyright law.</td>
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-          <td id="L151" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="151"></td>
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-        <tr>
-          <td id="L152" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="152"></td>
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-          <td id="L153" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="153"></td>
-          <td id="LC153" class="blob-code blob-code-inner js-file-line">convey, without conditions so long as your license otherwise remains</td>
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-        <tr>
-          <td id="L154" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="154"></td>
-          <td id="LC154" class="blob-code blob-code-inner js-file-line">in force.  You may convey covered works to others for the sole purpose</td>
-        </tr>
-        <tr>
-          <td id="L155" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="155"></td>
-          <td id="LC155" class="blob-code blob-code-inner js-file-line">of having them make modifications exclusively for you, or provide you</td>
-        </tr>
-        <tr>
-          <td id="L156" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="156"></td>
-          <td id="LC156" class="blob-code blob-code-inner js-file-line">with facilities for running those works, provided that you comply with</td>
-        </tr>
-        <tr>
-          <td id="L157" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="157"></td>
-          <td id="LC157" class="blob-code blob-code-inner js-file-line">the terms of this License in conveying all material for which you do</td>
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-        <tr>
-          <td id="L158" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="158"></td>
-          <td id="LC158" class="blob-code blob-code-inner js-file-line">not control copyright.  Those thus making or running the covered works</td>
-        </tr>
-        <tr>
-          <td id="L159" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="159"></td>
-          <td id="LC159" class="blob-code blob-code-inner js-file-line">for you must do so exclusively on your behalf, under your direction</td>
-        </tr>
-        <tr>
-          <td id="L160" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="160"></td>
-          <td id="LC160" class="blob-code blob-code-inner js-file-line">and control, on terms that prohibit them from making any copies of</td>
-        </tr>
-        <tr>
-          <td id="L161" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="161"></td>
-          <td id="LC161" class="blob-code blob-code-inner js-file-line">your copyrighted material outside their relationship with you.</td>
-        </tr>
-        <tr>
-          <td id="L162" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="162"></td>
-          <td id="LC162" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L163" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="163"></td>
-          <td id="LC163" class="blob-code blob-code-inner js-file-line">  Conveying under any other circumstances is permitted solely under</td>
-        </tr>
-        <tr>
-          <td id="L164" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="164"></td>
-          <td id="LC164" class="blob-code blob-code-inner js-file-line">the conditions stated below.  Sublicensing is not allowed; section 10</td>
-        </tr>
-        <tr>
-          <td id="L165" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="165"></td>
-          <td id="LC165" class="blob-code blob-code-inner js-file-line">makes it unnecessary.</td>
-        </tr>
-        <tr>
-          <td id="L166" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="166"></td>
-          <td id="LC166" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L167" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="167"></td>
-          <td id="LC167" class="blob-code blob-code-inner js-file-line">  3. Protecting Users&#39; Legal Rights From Anti-Circumvention Law.</td>
-        </tr>
-        <tr>
-          <td id="L168" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="168"></td>
-          <td id="LC168" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L169" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="169"></td>
-          <td id="LC169" class="blob-code blob-code-inner js-file-line">  No covered work shall be deemed part of an effective technological</td>
-        </tr>
-        <tr>
-          <td id="L170" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="170"></td>
-          <td id="LC170" class="blob-code blob-code-inner js-file-line">measure under any applicable law fulfilling obligations under article</td>
-        </tr>
-        <tr>
-          <td id="L171" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="171"></td>
-          <td id="LC171" class="blob-code blob-code-inner js-file-line">11 of the WIPO copyright treaty adopted on 20 December 1996, or</td>
-        </tr>
-        <tr>
-          <td id="L172" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="172"></td>
-          <td id="LC172" class="blob-code blob-code-inner js-file-line">similar laws prohibiting or restricting circumvention of such</td>
-        </tr>
-        <tr>
-          <td id="L173" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="173"></td>
-          <td id="LC173" class="blob-code blob-code-inner js-file-line">measures.</td>
-        </tr>
-        <tr>
-          <td id="L174" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="174"></td>
-          <td id="LC174" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L175" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="175"></td>
-          <td id="LC175" class="blob-code blob-code-inner js-file-line">  When you convey a covered work, you waive any legal power to forbid</td>
-        </tr>
-        <tr>
-          <td id="L176" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="176"></td>
-          <td id="LC176" class="blob-code blob-code-inner js-file-line">circumvention of technological measures to the extent such circumvention</td>
-        </tr>
-        <tr>
-          <td id="L177" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="177"></td>
-          <td id="LC177" class="blob-code blob-code-inner js-file-line">is effected by exercising rights under this License with respect to</td>
-        </tr>
-        <tr>
-          <td id="L178" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="178"></td>
-          <td id="LC178" class="blob-code blob-code-inner js-file-line">the covered work, and you disclaim any intention to limit operation or</td>
-        </tr>
-        <tr>
-          <td id="L179" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="179"></td>
-          <td id="LC179" class="blob-code blob-code-inner js-file-line">modification of the work as a means of enforcing, against the work&#39;s</td>
-        </tr>
-        <tr>
-          <td id="L180" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="180"></td>
-          <td id="LC180" class="blob-code blob-code-inner js-file-line">users, your or third parties&#39; legal rights to forbid circumvention of</td>
-        </tr>
-        <tr>
-          <td id="L181" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="181"></td>
-          <td id="LC181" class="blob-code blob-code-inner js-file-line">technological measures.</td>
-        </tr>
-        <tr>
-          <td id="L182" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="182"></td>
-          <td id="LC182" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L183" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="183"></td>
-          <td id="LC183" class="blob-code blob-code-inner js-file-line">  4. Conveying Verbatim Copies.</td>
-        </tr>
-        <tr>
-          <td id="L184" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="184"></td>
-          <td id="LC184" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L185" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="185"></td>
-          <td id="LC185" class="blob-code blob-code-inner js-file-line">  You may convey verbatim copies of the Program&#39;s source code as you</td>
-        </tr>
-        <tr>
-          <td id="L186" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="186"></td>
-          <td id="LC186" class="blob-code blob-code-inner js-file-line">receive it, in any medium, provided that you conspicuously and</td>
-        </tr>
-        <tr>
-          <td id="L187" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="187"></td>
-          <td id="LC187" class="blob-code blob-code-inner js-file-line">appropriately publish on each copy an appropriate copyright notice;</td>
-        </tr>
-        <tr>
-          <td id="L188" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="188"></td>
-          <td id="LC188" class="blob-code blob-code-inner js-file-line">keep intact all notices stating that this License and any</td>
-        </tr>
-        <tr>
-          <td id="L189" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="189"></td>
-          <td id="LC189" class="blob-code blob-code-inner js-file-line">non-permissive terms added in accord with section 7 apply to the code;</td>
-        </tr>
-        <tr>
-          <td id="L190" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="190"></td>
-          <td id="LC190" class="blob-code blob-code-inner js-file-line">keep intact all notices of the absence of any warranty; and give all</td>
-        </tr>
-        <tr>
-          <td id="L191" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="191"></td>
-          <td id="LC191" class="blob-code blob-code-inner js-file-line">recipients a copy of this License along with the Program.</td>
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-        <tr>
-          <td id="L192" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="192"></td>
-          <td id="LC192" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L193" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="193"></td>
-          <td id="LC193" class="blob-code blob-code-inner js-file-line">  You may charge any price or no price for each copy that you convey,</td>
-        </tr>
-        <tr>
-          <td id="L194" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="194"></td>
-          <td id="LC194" class="blob-code blob-code-inner js-file-line">and you may offer support or warranty protection for a fee.</td>
-        </tr>
-        <tr>
-          <td id="L195" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="195"></td>
-          <td id="LC195" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L196" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="196"></td>
-          <td id="LC196" class="blob-code blob-code-inner js-file-line">  5. Conveying Modified Source Versions.</td>
-        </tr>
-        <tr>
-          <td id="L197" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="197"></td>
-          <td id="LC197" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L198" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="198"></td>
-          <td id="LC198" class="blob-code blob-code-inner js-file-line">  You may convey a work based on the Program, or the modifications to</td>
-        </tr>
-        <tr>
-          <td id="L199" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="199"></td>
-          <td id="LC199" class="blob-code blob-code-inner js-file-line">produce it from the Program, in the form of source code under the</td>
-        </tr>
-        <tr>
-          <td id="L200" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="200"></td>
-          <td id="LC200" class="blob-code blob-code-inner js-file-line">terms of section 4, provided that you also meet all of these conditions:</td>
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-        <tr>
-          <td id="L201" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="201"></td>
-          <td id="LC201" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L202" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="202"></td>
-          <td id="LC202" class="blob-code blob-code-inner js-file-line">    a) The work must carry prominent notices stating that you modified</td>
-        </tr>
-        <tr>
-          <td id="L203" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="203"></td>
-          <td id="LC203" class="blob-code blob-code-inner js-file-line">    it, and giving a relevant date.</td>
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-        <tr>
-          <td id="L204" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="204"></td>
-          <td id="LC204" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L205" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="205"></td>
-          <td id="LC205" class="blob-code blob-code-inner js-file-line">    b) The work must carry prominent notices stating that it is</td>
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-        <tr>
-          <td id="L206" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="206"></td>
-          <td id="LC206" class="blob-code blob-code-inner js-file-line">    released under this License and any conditions added under section</td>
-        </tr>
-        <tr>
-          <td id="L207" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="207"></td>
-          <td id="LC207" class="blob-code blob-code-inner js-file-line">    7.  This requirement modifies the requirement in section 4 to</td>
-        </tr>
-        <tr>
-          <td id="L208" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="208"></td>
-          <td id="LC208" class="blob-code blob-code-inner js-file-line">    &quot;keep intact all notices&quot;.</td>
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-        <tr>
-          <td id="L209" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="209"></td>
-          <td id="LC209" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L210" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="210"></td>
-          <td id="LC210" class="blob-code blob-code-inner js-file-line">    c) You must license the entire work, as a whole, under this</td>
-        </tr>
-        <tr>
-          <td id="L211" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="211"></td>
-          <td id="LC211" class="blob-code blob-code-inner js-file-line">    License to anyone who comes into possession of a copy.  This</td>
-        </tr>
-        <tr>
-          <td id="L212" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="212"></td>
-          <td id="LC212" class="blob-code blob-code-inner js-file-line">    License will therefore apply, along with any applicable section 7</td>
-        </tr>
-        <tr>
-          <td id="L213" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="213"></td>
-          <td id="LC213" class="blob-code blob-code-inner js-file-line">    additional terms, to the whole of the work, and all its parts,</td>
-        </tr>
-        <tr>
-          <td id="L214" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="214"></td>
-          <td id="LC214" class="blob-code blob-code-inner js-file-line">    regardless of how they are packaged.  This License gives no</td>
-        </tr>
-        <tr>
-          <td id="L215" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="215"></td>
-          <td id="LC215" class="blob-code blob-code-inner js-file-line">    permission to license the work in any other way, but it does not</td>
-        </tr>
-        <tr>
-          <td id="L216" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="216"></td>
-          <td id="LC216" class="blob-code blob-code-inner js-file-line">    invalidate such permission if you have separately received it.</td>
-        </tr>
-        <tr>
-          <td id="L217" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="217"></td>
-          <td id="LC217" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L218" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="218"></td>
-          <td id="LC218" class="blob-code blob-code-inner js-file-line">    d) If the work has interactive user interfaces, each must display</td>
-        </tr>
-        <tr>
-          <td id="L219" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="219"></td>
-          <td id="LC219" class="blob-code blob-code-inner js-file-line">    Appropriate Legal Notices; however, if the Program has interactive</td>
-        </tr>
-        <tr>
-          <td id="L220" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="220"></td>
-          <td id="LC220" class="blob-code blob-code-inner js-file-line">    interfaces that do not display Appropriate Legal Notices, your</td>
-        </tr>
-        <tr>
-          <td id="L221" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="221"></td>
-          <td id="LC221" class="blob-code blob-code-inner js-file-line">    work need not make them do so.</td>
-        </tr>
-        <tr>
-          <td id="L222" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="222"></td>
-          <td id="LC222" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L223" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="223"></td>
-          <td id="LC223" class="blob-code blob-code-inner js-file-line">  A compilation of a covered work with other separate and independent</td>
-        </tr>
-        <tr>
-          <td id="L224" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="224"></td>
-          <td id="LC224" class="blob-code blob-code-inner js-file-line">works, which are not by their nature extensions of the covered work,</td>
-        </tr>
-        <tr>
-          <td id="L225" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="225"></td>
-          <td id="LC225" class="blob-code blob-code-inner js-file-line">and which are not combined with it such as to form a larger program,</td>
-        </tr>
-        <tr>
-          <td id="L226" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="226"></td>
-          <td id="LC226" class="blob-code blob-code-inner js-file-line">in or on a volume of a storage or distribution medium, is called an</td>
-        </tr>
-        <tr>
-          <td id="L227" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="227"></td>
-          <td id="LC227" class="blob-code blob-code-inner js-file-line">&quot;aggregate&quot; if the compilation and its resulting copyright are not</td>
-        </tr>
-        <tr>
-          <td id="L228" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="228"></td>
-          <td id="LC228" class="blob-code blob-code-inner js-file-line">used to limit the access or legal rights of the compilation&#39;s users</td>
-        </tr>
-        <tr>
-          <td id="L229" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="229"></td>
-          <td id="LC229" class="blob-code blob-code-inner js-file-line">beyond what the individual works permit.  Inclusion of a covered work</td>
-        </tr>
-        <tr>
-          <td id="L230" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="230"></td>
-          <td id="LC230" class="blob-code blob-code-inner js-file-line">in an aggregate does not cause this License to apply to the other</td>
-        </tr>
-        <tr>
-          <td id="L231" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="231"></td>
-          <td id="LC231" class="blob-code blob-code-inner js-file-line">parts of the aggregate.</td>
-        </tr>
-        <tr>
-          <td id="L232" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="232"></td>
-          <td id="LC232" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L233" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="233"></td>
-          <td id="LC233" class="blob-code blob-code-inner js-file-line">  6. Conveying Non-Source Forms.</td>
-        </tr>
-        <tr>
-          <td id="L234" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="234"></td>
-          <td id="LC234" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L235" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="235"></td>
-          <td id="LC235" class="blob-code blob-code-inner js-file-line">  You may convey a covered work in object code form under the terms</td>
-        </tr>
-        <tr>
-          <td id="L236" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="236"></td>
-          <td id="LC236" class="blob-code blob-code-inner js-file-line">of sections 4 and 5, provided that you also convey the</td>
-        </tr>
-        <tr>
-          <td id="L237" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="237"></td>
-          <td id="LC237" class="blob-code blob-code-inner js-file-line">machine-readable Corresponding Source under the terms of this License,</td>
-        </tr>
-        <tr>
-          <td id="L238" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="238"></td>
-          <td id="LC238" class="blob-code blob-code-inner js-file-line">in one of these ways:</td>
-        </tr>
-        <tr>
-          <td id="L239" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="239"></td>
-          <td id="LC239" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L240" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="240"></td>
-          <td id="LC240" class="blob-code blob-code-inner js-file-line">    a) Convey the object code in, or embodied in, a physical product</td>
-        </tr>
-        <tr>
-          <td id="L241" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="241"></td>
-          <td id="LC241" class="blob-code blob-code-inner js-file-line">    (including a physical distribution medium), accompanied by the</td>
-        </tr>
-        <tr>
-          <td id="L242" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="242"></td>
-          <td id="LC242" class="blob-code blob-code-inner js-file-line">    Corresponding Source fixed on a durable physical medium</td>
-        </tr>
-        <tr>
-          <td id="L243" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="243"></td>
-          <td id="LC243" class="blob-code blob-code-inner js-file-line">    customarily used for software interchange.</td>
-        </tr>
-        <tr>
-          <td id="L244" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="244"></td>
-          <td id="LC244" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L245" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="245"></td>
-          <td id="LC245" class="blob-code blob-code-inner js-file-line">    b) Convey the object code in, or embodied in, a physical product</td>
-        </tr>
-        <tr>
-          <td id="L246" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="246"></td>
-          <td id="LC246" class="blob-code blob-code-inner js-file-line">    (including a physical distribution medium), accompanied by a</td>
-        </tr>
-        <tr>
-          <td id="L247" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="247"></td>
-          <td id="LC247" class="blob-code blob-code-inner js-file-line">    written offer, valid for at least three years and valid for as</td>
-        </tr>
-        <tr>
-          <td id="L248" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="248"></td>
-          <td id="LC248" class="blob-code blob-code-inner js-file-line">    long as you offer spare parts or customer support for that product</td>
-        </tr>
-        <tr>
-          <td id="L249" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="249"></td>
-          <td id="LC249" class="blob-code blob-code-inner js-file-line">    model, to give anyone who possesses the object code either (1) a</td>
-        </tr>
-        <tr>
-          <td id="L250" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="250"></td>
-          <td id="LC250" class="blob-code blob-code-inner js-file-line">    copy of the Corresponding Source for all the software in the</td>
-        </tr>
-        <tr>
-          <td id="L251" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="251"></td>
-          <td id="LC251" class="blob-code blob-code-inner js-file-line">    product that is covered by this License, on a durable physical</td>
-        </tr>
-        <tr>
-          <td id="L252" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="252"></td>
-          <td id="LC252" class="blob-code blob-code-inner js-file-line">    medium customarily used for software interchange, for a price no</td>
-        </tr>
-        <tr>
-          <td id="L253" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="253"></td>
-          <td id="LC253" class="blob-code blob-code-inner js-file-line">    more than your reasonable cost of physically performing this</td>
-        </tr>
-        <tr>
-          <td id="L254" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="254"></td>
-          <td id="LC254" class="blob-code blob-code-inner js-file-line">    conveying of source, or (2) access to copy the</td>
-        </tr>
-        <tr>
-          <td id="L255" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="255"></td>
-          <td id="LC255" class="blob-code blob-code-inner js-file-line">    Corresponding Source from a network server at no charge.</td>
-        </tr>
-        <tr>
-          <td id="L256" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="256"></td>
-          <td id="LC256" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L257" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="257"></td>
-          <td id="LC257" class="blob-code blob-code-inner js-file-line">    c) Convey individual copies of the object code with a copy of the</td>
-        </tr>
-        <tr>
-          <td id="L258" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="258"></td>
-          <td id="LC258" class="blob-code blob-code-inner js-file-line">    written offer to provide the Corresponding Source.  This</td>
-        </tr>
-        <tr>
-          <td id="L259" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="259"></td>
-          <td id="LC259" class="blob-code blob-code-inner js-file-line">    alternative is allowed only occasionally and noncommercially, and</td>
-        </tr>
-        <tr>
-          <td id="L260" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="260"></td>
-          <td id="LC260" class="blob-code blob-code-inner js-file-line">    only if you received the object code with such an offer, in accord</td>
-        </tr>
-        <tr>
-          <td id="L261" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="261"></td>
-          <td id="LC261" class="blob-code blob-code-inner js-file-line">    with subsection 6b.</td>
-        </tr>
-        <tr>
-          <td id="L262" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="262"></td>
-          <td id="LC262" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L263" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="263"></td>
-          <td id="LC263" class="blob-code blob-code-inner js-file-line">    d) Convey the object code by offering access from a designated</td>
-        </tr>
-        <tr>
-          <td id="L264" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="264"></td>
-          <td id="LC264" class="blob-code blob-code-inner js-file-line">    place (gratis or for a charge), and offer equivalent access to the</td>
-        </tr>
-        <tr>
-          <td id="L265" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="265"></td>
-          <td id="LC265" class="blob-code blob-code-inner js-file-line">    Corresponding Source in the same way through the same place at no</td>
-        </tr>
-        <tr>
-          <td id="L266" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="266"></td>
-          <td id="LC266" class="blob-code blob-code-inner js-file-line">    further charge.  You need not require recipients to copy the</td>
-        </tr>
-        <tr>
-          <td id="L267" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="267"></td>
-          <td id="LC267" class="blob-code blob-code-inner js-file-line">    Corresponding Source along with the object code.  If the place to</td>
-        </tr>
-        <tr>
-          <td id="L268" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="268"></td>
-          <td id="LC268" class="blob-code blob-code-inner js-file-line">    copy the object code is a network server, the Corresponding Source</td>
-        </tr>
-        <tr>
-          <td id="L269" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="269"></td>
-          <td id="LC269" class="blob-code blob-code-inner js-file-line">    may be on a different server (operated by you or a third party)</td>
-        </tr>
-        <tr>
-          <td id="L270" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="270"></td>
-          <td id="LC270" class="blob-code blob-code-inner js-file-line">    that supports equivalent copying facilities, provided you maintain</td>
-        </tr>
-        <tr>
-          <td id="L271" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="271"></td>
-          <td id="LC271" class="blob-code blob-code-inner js-file-line">    clear directions next to the object code saying where to find the</td>
-        </tr>
-        <tr>
-          <td id="L272" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="272"></td>
-          <td id="LC272" class="blob-code blob-code-inner js-file-line">    Corresponding Source.  Regardless of what server hosts the</td>
-        </tr>
-        <tr>
-          <td id="L273" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="273"></td>
-          <td id="LC273" class="blob-code blob-code-inner js-file-line">    Corresponding Source, you remain obligated to ensure that it is</td>
-        </tr>
-        <tr>
-          <td id="L274" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="274"></td>
-          <td id="LC274" class="blob-code blob-code-inner js-file-line">    available for as long as needed to satisfy these requirements.</td>
-        </tr>
-        <tr>
-          <td id="L275" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="275"></td>
-          <td id="LC275" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L276" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="276"></td>
-          <td id="LC276" class="blob-code blob-code-inner js-file-line">    e) Convey the object code using peer-to-peer transmission, provided</td>
-        </tr>
-        <tr>
-          <td id="L277" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="277"></td>
-          <td id="LC277" class="blob-code blob-code-inner js-file-line">    you inform other peers where the object code and Corresponding</td>
-        </tr>
-        <tr>
-          <td id="L278" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="278"></td>
-          <td id="LC278" class="blob-code blob-code-inner js-file-line">    Source of the work are being offered to the general public at no</td>
-        </tr>
-        <tr>
-          <td id="L279" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="279"></td>
-          <td id="LC279" class="blob-code blob-code-inner js-file-line">    charge under subsection 6d.</td>
-        </tr>
-        <tr>
-          <td id="L280" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="280"></td>
-          <td id="LC280" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L281" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="281"></td>
-          <td id="LC281" class="blob-code blob-code-inner js-file-line">  A separable portion of the object code, whose source code is excluded</td>
-        </tr>
-        <tr>
-          <td id="L282" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="282"></td>
-          <td id="LC282" class="blob-code blob-code-inner js-file-line">from the Corresponding Source as a System Library, need not be</td>
-        </tr>
-        <tr>
-          <td id="L283" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="283"></td>
-          <td id="LC283" class="blob-code blob-code-inner js-file-line">included in conveying the object code work.</td>
-        </tr>
-        <tr>
-          <td id="L284" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="284"></td>
-          <td id="LC284" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L285" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="285"></td>
-          <td id="LC285" class="blob-code blob-code-inner js-file-line">  A &quot;User Product&quot; is either (1) a &quot;consumer product&quot;, which means any</td>
-        </tr>
-        <tr>
-          <td id="L286" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="286"></td>
-          <td id="LC286" class="blob-code blob-code-inner js-file-line">tangible personal property which is normally used for personal, family,</td>
-        </tr>
-        <tr>
-          <td id="L287" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="287"></td>
-          <td id="LC287" class="blob-code blob-code-inner js-file-line">or household purposes, or (2) anything designed or sold for incorporation</td>
-        </tr>
-        <tr>
-          <td id="L288" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="288"></td>
-          <td id="LC288" class="blob-code blob-code-inner js-file-line">into a dwelling.  In determining whether a product is a consumer product,</td>
-        </tr>
-        <tr>
-          <td id="L289" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="289"></td>
-          <td id="LC289" class="blob-code blob-code-inner js-file-line">doubtful cases shall be resolved in favor of coverage.  For a particular</td>
-        </tr>
-        <tr>
-          <td id="L290" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="290"></td>
-          <td id="LC290" class="blob-code blob-code-inner js-file-line">product received by a particular user, &quot;normally used&quot; refers to a</td>
-        </tr>
-        <tr>
-          <td id="L291" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="291"></td>
-          <td id="LC291" class="blob-code blob-code-inner js-file-line">typical or common use of that class of product, regardless of the status</td>
-        </tr>
-        <tr>
-          <td id="L292" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="292"></td>
-          <td id="LC292" class="blob-code blob-code-inner js-file-line">of the particular user or of the way in which the particular user</td>
-        </tr>
-        <tr>
-          <td id="L293" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="293"></td>
-          <td id="LC293" class="blob-code blob-code-inner js-file-line">actually uses, or expects or is expected to use, the product.  A product</td>
-        </tr>
-        <tr>
-          <td id="L294" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="294"></td>
-          <td id="LC294" class="blob-code blob-code-inner js-file-line">is a consumer product regardless of whether the product has substantial</td>
-        </tr>
-        <tr>
-          <td id="L295" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="295"></td>
-          <td id="LC295" class="blob-code blob-code-inner js-file-line">commercial, industrial or non-consumer uses, unless such uses represent</td>
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-        <tr>
-          <td id="L296" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="296"></td>
-          <td id="LC296" class="blob-code blob-code-inner js-file-line">the only significant mode of use of the product.</td>
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-        <tr>
-          <td id="L297" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="297"></td>
-          <td id="LC297" class="blob-code blob-code-inner js-file-line">
-</td>
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-        <tr>
-          <td id="L298" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="298"></td>
-          <td id="LC298" class="blob-code blob-code-inner js-file-line">  &quot;Installation Information&quot; for a User Product means any methods,</td>
-        </tr>
-        <tr>
-          <td id="L299" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="299"></td>
-          <td id="LC299" class="blob-code blob-code-inner js-file-line">procedures, authorization keys, or other information required to install</td>
-        </tr>
-        <tr>
-          <td id="L300" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="300"></td>
-          <td id="LC300" class="blob-code blob-code-inner js-file-line">and execute modified versions of a covered work in that User Product from</td>
-        </tr>
-        <tr>
-          <td id="L301" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="301"></td>
-          <td id="LC301" class="blob-code blob-code-inner js-file-line">a modified version of its Corresponding Source.  The information must</td>
-        </tr>
-        <tr>
-          <td id="L302" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="302"></td>
-          <td id="LC302" class="blob-code blob-code-inner js-file-line">suffice to ensure that the continued functioning of the modified object</td>
-        </tr>
-        <tr>
-          <td id="L303" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="303"></td>
-          <td id="LC303" class="blob-code blob-code-inner js-file-line">code is in no case prevented or interfered with solely because</td>
-        </tr>
-        <tr>
-          <td id="L304" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="304"></td>
-          <td id="LC304" class="blob-code blob-code-inner js-file-line">modification has been made.</td>
-        </tr>
-        <tr>
-          <td id="L305" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="305"></td>
-          <td id="LC305" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L306" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="306"></td>
-          <td id="LC306" class="blob-code blob-code-inner js-file-line">  If you convey an object code work under this section in, or with, or</td>
-        </tr>
-        <tr>
-          <td id="L307" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="307"></td>
-          <td id="LC307" class="blob-code blob-code-inner js-file-line">specifically for use in, a User Product, and the conveying occurs as</td>
-        </tr>
-        <tr>
-          <td id="L308" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="308"></td>
-          <td id="LC308" class="blob-code blob-code-inner js-file-line">part of a transaction in which the right of possession and use of the</td>
-        </tr>
-        <tr>
-          <td id="L309" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="309"></td>
-          <td id="LC309" class="blob-code blob-code-inner js-file-line">User Product is transferred to the recipient in perpetuity or for a</td>
-        </tr>
-        <tr>
-          <td id="L310" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="310"></td>
-          <td id="LC310" class="blob-code blob-code-inner js-file-line">fixed term (regardless of how the transaction is characterized), the</td>
-        </tr>
-        <tr>
-          <td id="L311" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="311"></td>
-          <td id="LC311" class="blob-code blob-code-inner js-file-line">Corresponding Source conveyed under this section must be accompanied</td>
-        </tr>
-        <tr>
-          <td id="L312" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="312"></td>
-          <td id="LC312" class="blob-code blob-code-inner js-file-line">by the Installation Information.  But this requirement does not apply</td>
-        </tr>
-        <tr>
-          <td id="L313" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="313"></td>
-          <td id="LC313" class="blob-code blob-code-inner js-file-line">if neither you nor any third party retains the ability to install</td>
-        </tr>
-        <tr>
-          <td id="L314" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="314"></td>
-          <td id="LC314" class="blob-code blob-code-inner js-file-line">modified object code on the User Product (for example, the work has</td>
-        </tr>
-        <tr>
-          <td id="L315" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="315"></td>
-          <td id="LC315" class="blob-code blob-code-inner js-file-line">been installed in ROM).</td>
-        </tr>
-        <tr>
-          <td id="L316" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="316"></td>
-          <td id="LC316" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L317" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="317"></td>
-          <td id="LC317" class="blob-code blob-code-inner js-file-line">  The requirement to provide Installation Information does not include a</td>
-        </tr>
-        <tr>
-          <td id="L318" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="318"></td>
-          <td id="LC318" class="blob-code blob-code-inner js-file-line">requirement to continue to provide support service, warranty, or updates</td>
-        </tr>
-        <tr>
-          <td id="L319" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="319"></td>
-          <td id="LC319" class="blob-code blob-code-inner js-file-line">for a work that has been modified or installed by the recipient, or for</td>
-        </tr>
-        <tr>
-          <td id="L320" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="320"></td>
-          <td id="LC320" class="blob-code blob-code-inner js-file-line">the User Product in which it has been modified or installed.  Access to a</td>
-        </tr>
-        <tr>
-          <td id="L321" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="321"></td>
-          <td id="LC321" class="blob-code blob-code-inner js-file-line">network may be denied when the modification itself materially and</td>
-        </tr>
-        <tr>
-          <td id="L322" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="322"></td>
-          <td id="LC322" class="blob-code blob-code-inner js-file-line">adversely affects the operation of the network or violates the rules and</td>
-        </tr>
-        <tr>
-          <td id="L323" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="323"></td>
-          <td id="LC323" class="blob-code blob-code-inner js-file-line">protocols for communication across the network.</td>
-        </tr>
-        <tr>
-          <td id="L324" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="324"></td>
-          <td id="LC324" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L325" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="325"></td>
-          <td id="LC325" class="blob-code blob-code-inner js-file-line">  Corresponding Source conveyed, and Installation Information provided,</td>
-        </tr>
-        <tr>
-          <td id="L326" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="326"></td>
-          <td id="LC326" class="blob-code blob-code-inner js-file-line">in accord with this section must be in a format that is publicly</td>
-        </tr>
-        <tr>
-          <td id="L327" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="327"></td>
-          <td id="LC327" class="blob-code blob-code-inner js-file-line">documented (and with an implementation available to the public in</td>
-        </tr>
-        <tr>
-          <td id="L328" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="328"></td>
-          <td id="LC328" class="blob-code blob-code-inner js-file-line">source code form), and must require no special password or key for</td>
-        </tr>
-        <tr>
-          <td id="L329" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="329"></td>
-          <td id="LC329" class="blob-code blob-code-inner js-file-line">unpacking, reading or copying.</td>
-        </tr>
-        <tr>
-          <td id="L330" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="330"></td>
-          <td id="LC330" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L331" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="331"></td>
-          <td id="LC331" class="blob-code blob-code-inner js-file-line">  7. Additional Terms.</td>
-        </tr>
-        <tr>
-          <td id="L332" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="332"></td>
-          <td id="LC332" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L333" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="333"></td>
-          <td id="LC333" class="blob-code blob-code-inner js-file-line">  &quot;Additional permissions&quot; are terms that supplement the terms of this</td>
-        </tr>
-        <tr>
-          <td id="L334" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="334"></td>
-          <td id="LC334" class="blob-code blob-code-inner js-file-line">License by making exceptions from one or more of its conditions.</td>
-        </tr>
-        <tr>
-          <td id="L335" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="335"></td>
-          <td id="LC335" class="blob-code blob-code-inner js-file-line">Additional permissions that are applicable to the entire Program shall</td>
-        </tr>
-        <tr>
-          <td id="L336" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="336"></td>
-          <td id="LC336" class="blob-code blob-code-inner js-file-line">be treated as though they were included in this License, to the extent</td>
-        </tr>
-        <tr>
-          <td id="L337" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="337"></td>
-          <td id="LC337" class="blob-code blob-code-inner js-file-line">that they are valid under applicable law.  If additional permissions</td>
-        </tr>
-        <tr>
-          <td id="L338" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="338"></td>
-          <td id="LC338" class="blob-code blob-code-inner js-file-line">apply only to part of the Program, that part may be used separately</td>
-        </tr>
-        <tr>
-          <td id="L339" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="339"></td>
-          <td id="LC339" class="blob-code blob-code-inner js-file-line">under those permissions, but the entire Program remains governed by</td>
-        </tr>
-        <tr>
-          <td id="L340" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="340"></td>
-          <td id="LC340" class="blob-code blob-code-inner js-file-line">this License without regard to the additional permissions.</td>
-        </tr>
-        <tr>
-          <td id="L341" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="341"></td>
-          <td id="LC341" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L342" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="342"></td>
-          <td id="LC342" class="blob-code blob-code-inner js-file-line">  When you convey a copy of a covered work, you may at your option</td>
-        </tr>
-        <tr>
-          <td id="L343" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="343"></td>
-          <td id="LC343" class="blob-code blob-code-inner js-file-line">remove any additional permissions from that copy, or from any part of</td>
-        </tr>
-        <tr>
-          <td id="L344" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="344"></td>
-          <td id="LC344" class="blob-code blob-code-inner js-file-line">it.  (Additional permissions may be written to require their own</td>
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-        <tr>
-          <td id="L345" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="345"></td>
-          <td id="LC345" class="blob-code blob-code-inner js-file-line">removal in certain cases when you modify the work.)  You may place</td>
-        </tr>
-        <tr>
-          <td id="L346" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="346"></td>
-          <td id="LC346" class="blob-code blob-code-inner js-file-line">additional permissions on material, added by you to a covered work,</td>
-        </tr>
-        <tr>
-          <td id="L347" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="347"></td>
-          <td id="LC347" class="blob-code blob-code-inner js-file-line">for which you have or can give appropriate copyright permission.</td>
-        </tr>
-        <tr>
-          <td id="L348" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="348"></td>
-          <td id="LC348" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L349" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="349"></td>
-          <td id="LC349" class="blob-code blob-code-inner js-file-line">  Notwithstanding any other provision of this License, for material you</td>
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-        <tr>
-          <td id="L350" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="350"></td>
-          <td id="LC350" class="blob-code blob-code-inner js-file-line">add to a covered work, you may (if authorized by the copyright holders of</td>
-        </tr>
-        <tr>
-          <td id="L351" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="351"></td>
-          <td id="LC351" class="blob-code blob-code-inner js-file-line">that material) supplement the terms of this License with terms:</td>
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-        <tr>
-          <td id="L352" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="352"></td>
-          <td id="LC352" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L353" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="353"></td>
-          <td id="LC353" class="blob-code blob-code-inner js-file-line">    a) Disclaiming warranty or limiting liability differently from the</td>
-        </tr>
-        <tr>
-          <td id="L354" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="354"></td>
-          <td id="LC354" class="blob-code blob-code-inner js-file-line">    terms of sections 15 and 16 of this License; or</td>
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-        <tr>
-          <td id="L355" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="355"></td>
-          <td id="LC355" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L356" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="356"></td>
-          <td id="LC356" class="blob-code blob-code-inner js-file-line">    b) Requiring preservation of specified reasonable legal notices or</td>
-        </tr>
-        <tr>
-          <td id="L357" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="357"></td>
-          <td id="LC357" class="blob-code blob-code-inner js-file-line">    author attributions in that material or in the Appropriate Legal</td>
-        </tr>
-        <tr>
-          <td id="L358" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="358"></td>
-          <td id="LC358" class="blob-code blob-code-inner js-file-line">    Notices displayed by works containing it; or</td>
-        </tr>
-        <tr>
-          <td id="L359" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="359"></td>
-          <td id="LC359" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L360" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="360"></td>
-          <td id="LC360" class="blob-code blob-code-inner js-file-line">    c) Prohibiting misrepresentation of the origin of that material, or</td>
-        </tr>
-        <tr>
-          <td id="L361" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="361"></td>
-          <td id="LC361" class="blob-code blob-code-inner js-file-line">    requiring that modified versions of such material be marked in</td>
-        </tr>
-        <tr>
-          <td id="L362" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="362"></td>
-          <td id="LC362" class="blob-code blob-code-inner js-file-line">    reasonable ways as different from the original version; or</td>
-        </tr>
-        <tr>
-          <td id="L363" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="363"></td>
-          <td id="LC363" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L364" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="364"></td>
-          <td id="LC364" class="blob-code blob-code-inner js-file-line">    d) Limiting the use for publicity purposes of names of licensors or</td>
-        </tr>
-        <tr>
-          <td id="L365" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="365"></td>
-          <td id="LC365" class="blob-code blob-code-inner js-file-line">    authors of the material; or</td>
-        </tr>
-        <tr>
-          <td id="L366" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="366"></td>
-          <td id="LC366" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L367" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="367"></td>
-          <td id="LC367" class="blob-code blob-code-inner js-file-line">    e) Declining to grant rights under trademark law for use of some</td>
-        </tr>
-        <tr>
-          <td id="L368" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="368"></td>
-          <td id="LC368" class="blob-code blob-code-inner js-file-line">    trade names, trademarks, or service marks; or</td>
-        </tr>
-        <tr>
-          <td id="L369" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="369"></td>
-          <td id="LC369" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L370" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="370"></td>
-          <td id="LC370" class="blob-code blob-code-inner js-file-line">    f) Requiring indemnification of licensors and authors of that</td>
-        </tr>
-        <tr>
-          <td id="L371" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="371"></td>
-          <td id="LC371" class="blob-code blob-code-inner js-file-line">    material by anyone who conveys the material (or modified versions of</td>
-        </tr>
-        <tr>
-          <td id="L372" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="372"></td>
-          <td id="LC372" class="blob-code blob-code-inner js-file-line">    it) with contractual assumptions of liability to the recipient, for</td>
-        </tr>
-        <tr>
-          <td id="L373" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="373"></td>
-          <td id="LC373" class="blob-code blob-code-inner js-file-line">    any liability that these contractual assumptions directly impose on</td>
-        </tr>
-        <tr>
-          <td id="L374" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="374"></td>
-          <td id="LC374" class="blob-code blob-code-inner js-file-line">    those licensors and authors.</td>
-        </tr>
-        <tr>
-          <td id="L375" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="375"></td>
-          <td id="LC375" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L376" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="376"></td>
-          <td id="LC376" class="blob-code blob-code-inner js-file-line">  All other non-permissive additional terms are considered &quot;further</td>
-        </tr>
-        <tr>
-          <td id="L377" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="377"></td>
-          <td id="LC377" class="blob-code blob-code-inner js-file-line">restrictions&quot; within the meaning of section 10.  If the Program as you</td>
-        </tr>
-        <tr>
-          <td id="L378" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="378"></td>
-          <td id="LC378" class="blob-code blob-code-inner js-file-line">received it, or any part of it, contains a notice stating that it is</td>
-        </tr>
-        <tr>
-          <td id="L379" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="379"></td>
-          <td id="LC379" class="blob-code blob-code-inner js-file-line">governed by this License along with a term that is a further</td>
-        </tr>
-        <tr>
-          <td id="L380" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="380"></td>
-          <td id="LC380" class="blob-code blob-code-inner js-file-line">restriction, you may remove that term.  If a license document contains</td>
-        </tr>
-        <tr>
-          <td id="L381" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="381"></td>
-          <td id="LC381" class="blob-code blob-code-inner js-file-line">a further restriction but permits relicensing or conveying under this</td>
-        </tr>
-        <tr>
-          <td id="L382" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="382"></td>
-          <td id="LC382" class="blob-code blob-code-inner js-file-line">License, you may add to a covered work material governed by the terms</td>
-        </tr>
-        <tr>
-          <td id="L383" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="383"></td>
-          <td id="LC383" class="blob-code blob-code-inner js-file-line">of that license document, provided that the further restriction does</td>
-        </tr>
-        <tr>
-          <td id="L384" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="384"></td>
-          <td id="LC384" class="blob-code blob-code-inner js-file-line">not survive such relicensing or conveying.</td>
-        </tr>
-        <tr>
-          <td id="L385" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="385"></td>
-          <td id="LC385" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L386" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="386"></td>
-          <td id="LC386" class="blob-code blob-code-inner js-file-line">  If you add terms to a covered work in accord with this section, you</td>
-        </tr>
-        <tr>
-          <td id="L387" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="387"></td>
-          <td id="LC387" class="blob-code blob-code-inner js-file-line">must place, in the relevant source files, a statement of the</td>
-        </tr>
-        <tr>
-          <td id="L388" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="388"></td>
-          <td id="LC388" class="blob-code blob-code-inner js-file-line">additional terms that apply to those files, or a notice indicating</td>
-        </tr>
-        <tr>
-          <td id="L389" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="389"></td>
-          <td id="LC389" class="blob-code blob-code-inner js-file-line">where to find the applicable terms.</td>
-        </tr>
-        <tr>
-          <td id="L390" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="390"></td>
-          <td id="LC390" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L391" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="391"></td>
-          <td id="LC391" class="blob-code blob-code-inner js-file-line">  Additional terms, permissive or non-permissive, may be stated in the</td>
-        </tr>
-        <tr>
-          <td id="L392" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="392"></td>
-          <td id="LC392" class="blob-code blob-code-inner js-file-line">form of a separately written license, or stated as exceptions;</td>
-        </tr>
-        <tr>
-          <td id="L393" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="393"></td>
-          <td id="LC393" class="blob-code blob-code-inner js-file-line">the above requirements apply either way.</td>
-        </tr>
-        <tr>
-          <td id="L394" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="394"></td>
-          <td id="LC394" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L395" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="395"></td>
-          <td id="LC395" class="blob-code blob-code-inner js-file-line">  8. Termination.</td>
-        </tr>
-        <tr>
-          <td id="L396" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="396"></td>
-          <td id="LC396" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L397" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="397"></td>
-          <td id="LC397" class="blob-code blob-code-inner js-file-line">  You may not propagate or modify a covered work except as expressly</td>
-        </tr>
-        <tr>
-          <td id="L398" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="398"></td>
-          <td id="LC398" class="blob-code blob-code-inner js-file-line">provided under this License.  Any attempt otherwise to propagate or</td>
-        </tr>
-        <tr>
-          <td id="L399" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="399"></td>
-          <td id="LC399" class="blob-code blob-code-inner js-file-line">modify it is void, and will automatically terminate your rights under</td>
-        </tr>
-        <tr>
-          <td id="L400" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="400"></td>
-          <td id="LC400" class="blob-code blob-code-inner js-file-line">this License (including any patent licenses granted under the third</td>
-        </tr>
-        <tr>
-          <td id="L401" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="401"></td>
-          <td id="LC401" class="blob-code blob-code-inner js-file-line">paragraph of section 11).</td>
-        </tr>
-        <tr>
-          <td id="L402" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="402"></td>
-          <td id="LC402" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L403" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="403"></td>
-          <td id="LC403" class="blob-code blob-code-inner js-file-line">  However, if you cease all violation of this License, then your</td>
-        </tr>
-        <tr>
-          <td id="L404" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="404"></td>
-          <td id="LC404" class="blob-code blob-code-inner js-file-line">license from a particular copyright holder is reinstated (a)</td>
-        </tr>
-        <tr>
-          <td id="L405" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="405"></td>
-          <td id="LC405" class="blob-code blob-code-inner js-file-line">provisionally, unless and until the copyright holder explicitly and</td>
-        </tr>
-        <tr>
-          <td id="L406" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="406"></td>
-          <td id="LC406" class="blob-code blob-code-inner js-file-line">finally terminates your license, and (b) permanently, if the copyright</td>
-        </tr>
-        <tr>
-          <td id="L407" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="407"></td>
-          <td id="LC407" class="blob-code blob-code-inner js-file-line">holder fails to notify you of the violation by some reasonable means</td>
-        </tr>
-        <tr>
-          <td id="L408" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="408"></td>
-          <td id="LC408" class="blob-code blob-code-inner js-file-line">prior to 60 days after the cessation.</td>
-        </tr>
-        <tr>
-          <td id="L409" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="409"></td>
-          <td id="LC409" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L410" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="410"></td>
-          <td id="LC410" class="blob-code blob-code-inner js-file-line">  Moreover, your license from a particular copyright holder is</td>
-        </tr>
-        <tr>
-          <td id="L411" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="411"></td>
-          <td id="LC411" class="blob-code blob-code-inner js-file-line">reinstated permanently if the copyright holder notifies you of the</td>
-        </tr>
-        <tr>
-          <td id="L412" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="412"></td>
-          <td id="LC412" class="blob-code blob-code-inner js-file-line">violation by some reasonable means, this is the first time you have</td>
-        </tr>
-        <tr>
-          <td id="L413" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="413"></td>
-          <td id="LC413" class="blob-code blob-code-inner js-file-line">received notice of violation of this License (for any work) from that</td>
-        </tr>
-        <tr>
-          <td id="L414" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="414"></td>
-          <td id="LC414" class="blob-code blob-code-inner js-file-line">copyright holder, and you cure the violation prior to 30 days after</td>
-        </tr>
-        <tr>
-          <td id="L415" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="415"></td>
-          <td id="LC415" class="blob-code blob-code-inner js-file-line">your receipt of the notice.</td>
-        </tr>
-        <tr>
-          <td id="L416" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="416"></td>
-          <td id="LC416" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L417" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="417"></td>
-          <td id="LC417" class="blob-code blob-code-inner js-file-line">  Termination of your rights under this section does not terminate the</td>
-        </tr>
-        <tr>
-          <td id="L418" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="418"></td>
-          <td id="LC418" class="blob-code blob-code-inner js-file-line">licenses of parties who have received copies or rights from you under</td>
-        </tr>
-        <tr>
-          <td id="L419" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="419"></td>
-          <td id="LC419" class="blob-code blob-code-inner js-file-line">this License.  If your rights have been terminated and not permanently</td>
-        </tr>
-        <tr>
-          <td id="L420" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="420"></td>
-          <td id="LC420" class="blob-code blob-code-inner js-file-line">reinstated, you do not qualify to receive new licenses for the same</td>
-        </tr>
-        <tr>
-          <td id="L421" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="421"></td>
-          <td id="LC421" class="blob-code blob-code-inner js-file-line">material under section 10.</td>
-        </tr>
-        <tr>
-          <td id="L422" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="422"></td>
-          <td id="LC422" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L423" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="423"></td>
-          <td id="LC423" class="blob-code blob-code-inner js-file-line">  9. Acceptance Not Required for Having Copies.</td>
-        </tr>
-        <tr>
-          <td id="L424" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="424"></td>
-          <td id="LC424" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L425" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="425"></td>
-          <td id="LC425" class="blob-code blob-code-inner js-file-line">  You are not required to accept this License in order to receive or</td>
-        </tr>
-        <tr>
-          <td id="L426" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="426"></td>
-          <td id="LC426" class="blob-code blob-code-inner js-file-line">run a copy of the Program.  Ancillary propagation of a covered work</td>
-        </tr>
-        <tr>
-          <td id="L427" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="427"></td>
-          <td id="LC427" class="blob-code blob-code-inner js-file-line">occurring solely as a consequence of using peer-to-peer transmission</td>
-        </tr>
-        <tr>
-          <td id="L428" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="428"></td>
-          <td id="LC428" class="blob-code blob-code-inner js-file-line">to receive a copy likewise does not require acceptance.  However,</td>
-        </tr>
-        <tr>
-          <td id="L429" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="429"></td>
-          <td id="LC429" class="blob-code blob-code-inner js-file-line">nothing other than this License grants you permission to propagate or</td>
-        </tr>
-        <tr>
-          <td id="L430" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="430"></td>
-          <td id="LC430" class="blob-code blob-code-inner js-file-line">modify any covered work.  These actions infringe copyright if you do</td>
-        </tr>
-        <tr>
-          <td id="L431" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="431"></td>
-          <td id="LC431" class="blob-code blob-code-inner js-file-line">not accept this License.  Therefore, by modifying or propagating a</td>
-        </tr>
-        <tr>
-          <td id="L432" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="432"></td>
-          <td id="LC432" class="blob-code blob-code-inner js-file-line">covered work, you indicate your acceptance of this License to do so.</td>
-        </tr>
-        <tr>
-          <td id="L433" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="433"></td>
-          <td id="LC433" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L434" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="434"></td>
-          <td id="LC434" class="blob-code blob-code-inner js-file-line">  10. Automatic Licensing of Downstream Recipients.</td>
-        </tr>
-        <tr>
-          <td id="L435" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="435"></td>
-          <td id="LC435" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L436" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="436"></td>
-          <td id="LC436" class="blob-code blob-code-inner js-file-line">  Each time you convey a covered work, the recipient automatically</td>
-        </tr>
-        <tr>
-          <td id="L437" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="437"></td>
-          <td id="LC437" class="blob-code blob-code-inner js-file-line">receives a license from the original licensors, to run, modify and</td>
-        </tr>
-        <tr>
-          <td id="L438" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="438"></td>
-          <td id="LC438" class="blob-code blob-code-inner js-file-line">propagate that work, subject to this License.  You are not responsible</td>
-        </tr>
-        <tr>
-          <td id="L439" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="439"></td>
-          <td id="LC439" class="blob-code blob-code-inner js-file-line">for enforcing compliance by third parties with this License.</td>
-        </tr>
-        <tr>
-          <td id="L440" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="440"></td>
-          <td id="LC440" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L441" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="441"></td>
-          <td id="LC441" class="blob-code blob-code-inner js-file-line">  An &quot;entity transaction&quot; is a transaction transferring control of an</td>
-        </tr>
-        <tr>
-          <td id="L442" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="442"></td>
-          <td id="LC442" class="blob-code blob-code-inner js-file-line">organization, or substantially all assets of one, or subdividing an</td>
-        </tr>
-        <tr>
-          <td id="L443" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="443"></td>
-          <td id="LC443" class="blob-code blob-code-inner js-file-line">organization, or merging organizations.  If propagation of a covered</td>
-        </tr>
-        <tr>
-          <td id="L444" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="444"></td>
-          <td id="LC444" class="blob-code blob-code-inner js-file-line">work results from an entity transaction, each party to that</td>
-        </tr>
-        <tr>
-          <td id="L445" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="445"></td>
-          <td id="LC445" class="blob-code blob-code-inner js-file-line">transaction who receives a copy of the work also receives whatever</td>
-        </tr>
-        <tr>
-          <td id="L446" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="446"></td>
-          <td id="LC446" class="blob-code blob-code-inner js-file-line">licenses to the work the party&#39;s predecessor in interest had or could</td>
-        </tr>
-        <tr>
-          <td id="L447" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="447"></td>
-          <td id="LC447" class="blob-code blob-code-inner js-file-line">give under the previous paragraph, plus a right to possession of the</td>
-        </tr>
-        <tr>
-          <td id="L448" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="448"></td>
-          <td id="LC448" class="blob-code blob-code-inner js-file-line">Corresponding Source of the work from the predecessor in interest, if</td>
-        </tr>
-        <tr>
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-        <tr>
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-          <td id="LC450" class="blob-code blob-code-inner js-file-line">
-</td>
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-          <td id="LC451" class="blob-code blob-code-inner js-file-line">  You may not impose any further restrictions on the exercise of the</td>
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-        <tr>
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-          <td id="LC452" class="blob-code blob-code-inner js-file-line">rights granted or affirmed under this License.  For example, you may</td>
-        </tr>
-        <tr>
-          <td id="L453" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="453"></td>
-          <td id="LC453" class="blob-code blob-code-inner js-file-line">not impose a license fee, royalty, or other charge for exercise of</td>
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-        <tr>
-          <td id="L454" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="454"></td>
-          <td id="LC454" class="blob-code blob-code-inner js-file-line">rights granted under this License, and you may not initiate litigation</td>
-        </tr>
-        <tr>
-          <td id="L455" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="455"></td>
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-        </tr>
-        <tr>
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-          <td id="LC456" class="blob-code blob-code-inner js-file-line">any patent claim is infringed by making, using, selling, offering for</td>
-        </tr>
-        <tr>
-          <td id="L457" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="457"></td>
-          <td id="LC457" class="blob-code blob-code-inner js-file-line">sale, or importing the Program or any portion of it.</td>
-        </tr>
-        <tr>
-          <td id="L458" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="458"></td>
-          <td id="LC458" class="blob-code blob-code-inner js-file-line">
-</td>
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-        <tr>
-          <td id="L459" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="459"></td>
-          <td id="LC459" class="blob-code blob-code-inner js-file-line">  11. Patents.</td>
-        </tr>
-        <tr>
-          <td id="L460" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="460"></td>
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-</td>
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-          <td id="LC461" class="blob-code blob-code-inner js-file-line">  A &quot;contributor&quot; is a copyright holder who authorizes use under this</td>
-        </tr>
-        <tr>
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-          <td id="LC462" class="blob-code blob-code-inner js-file-line">License of the Program or a work on which the Program is based.  The</td>
-        </tr>
-        <tr>
-          <td id="L463" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="463"></td>
-          <td id="LC463" class="blob-code blob-code-inner js-file-line">work thus licensed is called the contributor&#39;s &quot;contributor version&quot;.</td>
-        </tr>
-        <tr>
-          <td id="L464" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="464"></td>
-          <td id="LC464" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L465" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="465"></td>
-          <td id="LC465" class="blob-code blob-code-inner js-file-line">  A contributor&#39;s &quot;essential patent claims&quot; are all patent claims</td>
-        </tr>
-        <tr>
-          <td id="L466" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="466"></td>
-          <td id="LC466" class="blob-code blob-code-inner js-file-line">owned or controlled by the contributor, whether already acquired or</td>
-        </tr>
-        <tr>
-          <td id="L467" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="467"></td>
-          <td id="LC467" class="blob-code blob-code-inner js-file-line">hereafter acquired, that would be infringed by some manner, permitted</td>
-        </tr>
-        <tr>
-          <td id="L468" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="468"></td>
-          <td id="LC468" class="blob-code blob-code-inner js-file-line">by this License, of making, using, or selling its contributor version,</td>
-        </tr>
-        <tr>
-          <td id="L469" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="469"></td>
-          <td id="LC469" class="blob-code blob-code-inner js-file-line">but do not include claims that would be infringed only as a</td>
-        </tr>
-        <tr>
-          <td id="L470" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="470"></td>
-          <td id="LC470" class="blob-code blob-code-inner js-file-line">consequence of further modification of the contributor version.  For</td>
-        </tr>
-        <tr>
-          <td id="L471" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="471"></td>
-          <td id="LC471" class="blob-code blob-code-inner js-file-line">purposes of this definition, &quot;control&quot; includes the right to grant</td>
-        </tr>
-        <tr>
-          <td id="L472" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="472"></td>
-          <td id="LC472" class="blob-code blob-code-inner js-file-line">patent sublicenses in a manner consistent with the requirements of</td>
-        </tr>
-        <tr>
-          <td id="L473" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="473"></td>
-          <td id="LC473" class="blob-code blob-code-inner js-file-line">this License.</td>
-        </tr>
-        <tr>
-          <td id="L474" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="474"></td>
-          <td id="LC474" class="blob-code blob-code-inner js-file-line">
-</td>
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-        <tr>
-          <td id="L475" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="475"></td>
-          <td id="LC475" class="blob-code blob-code-inner js-file-line">  Each contributor grants you a non-exclusive, worldwide, royalty-free</td>
-        </tr>
-        <tr>
-          <td id="L476" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="476"></td>
-          <td id="LC476" class="blob-code blob-code-inner js-file-line">patent license under the contributor&#39;s essential patent claims, to</td>
-        </tr>
-        <tr>
-          <td id="L477" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="477"></td>
-          <td id="LC477" class="blob-code blob-code-inner js-file-line">make, use, sell, offer for sale, import and otherwise run, modify and</td>
-        </tr>
-        <tr>
-          <td id="L478" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="478"></td>
-          <td id="LC478" class="blob-code blob-code-inner js-file-line">propagate the contents of its contributor version.</td>
-        </tr>
-        <tr>
-          <td id="L479" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="479"></td>
-          <td id="LC479" class="blob-code blob-code-inner js-file-line">
-</td>
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-        <tr>
-          <td id="L480" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="480"></td>
-          <td id="LC480" class="blob-code blob-code-inner js-file-line">  In the following three paragraphs, a &quot;patent license&quot; is any express</td>
-        </tr>
-        <tr>
-          <td id="L481" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="481"></td>
-          <td id="LC481" class="blob-code blob-code-inner js-file-line">agreement or commitment, however denominated, not to enforce a patent</td>
-        </tr>
-        <tr>
-          <td id="L482" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="482"></td>
-          <td id="LC482" class="blob-code blob-code-inner js-file-line">(such as an express permission to practice a patent or covenant not to</td>
-        </tr>
-        <tr>
-          <td id="L483" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="483"></td>
-          <td id="LC483" class="blob-code blob-code-inner js-file-line">sue for patent infringement).  To &quot;grant&quot; such a patent license to a</td>
-        </tr>
-        <tr>
-          <td id="L484" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="484"></td>
-          <td id="LC484" class="blob-code blob-code-inner js-file-line">party means to make such an agreement or commitment not to enforce a</td>
-        </tr>
-        <tr>
-          <td id="L485" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="485"></td>
-          <td id="LC485" class="blob-code blob-code-inner js-file-line">patent against the party.</td>
-        </tr>
-        <tr>
-          <td id="L486" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="486"></td>
-          <td id="LC486" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L487" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="487"></td>
-          <td id="LC487" class="blob-code blob-code-inner js-file-line">  If you convey a covered work, knowingly relying on a patent license,</td>
-        </tr>
-        <tr>
-          <td id="L488" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="488"></td>
-          <td id="LC488" class="blob-code blob-code-inner js-file-line">and the Corresponding Source of the work is not available for anyone</td>
-        </tr>
-        <tr>
-          <td id="L489" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="489"></td>
-          <td id="LC489" class="blob-code blob-code-inner js-file-line">to copy, free of charge and under the terms of this License, through a</td>
-        </tr>
-        <tr>
-          <td id="L490" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="490"></td>
-          <td id="LC490" class="blob-code blob-code-inner js-file-line">publicly available network server or other readily accessible means,</td>
-        </tr>
-        <tr>
-          <td id="L491" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="491"></td>
-          <td id="LC491" class="blob-code blob-code-inner js-file-line">then you must either (1) cause the Corresponding Source to be so</td>
-        </tr>
-        <tr>
-          <td id="L492" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="492"></td>
-          <td id="LC492" class="blob-code blob-code-inner js-file-line">available, or (2) arrange to deprive yourself of the benefit of the</td>
-        </tr>
-        <tr>
-          <td id="L493" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="493"></td>
-          <td id="LC493" class="blob-code blob-code-inner js-file-line">patent license for this particular work, or (3) arrange, in a manner</td>
-        </tr>
-        <tr>
-          <td id="L494" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="494"></td>
-          <td id="LC494" class="blob-code blob-code-inner js-file-line">consistent with the requirements of this License, to extend the patent</td>
-        </tr>
-        <tr>
-          <td id="L495" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="495"></td>
-          <td id="LC495" class="blob-code blob-code-inner js-file-line">license to downstream recipients.  &quot;Knowingly relying&quot; means you have</td>
-        </tr>
-        <tr>
-          <td id="L496" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="496"></td>
-          <td id="LC496" class="blob-code blob-code-inner js-file-line">actual knowledge that, but for the patent license, your conveying the</td>
-        </tr>
-        <tr>
-          <td id="L497" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="497"></td>
-          <td id="LC497" class="blob-code blob-code-inner js-file-line">covered work in a country, or your recipient&#39;s use of the covered work</td>
-        </tr>
-        <tr>
-          <td id="L498" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="498"></td>
-          <td id="LC498" class="blob-code blob-code-inner js-file-line">in a country, would infringe one or more identifiable patents in that</td>
-        </tr>
-        <tr>
-          <td id="L499" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="499"></td>
-          <td id="LC499" class="blob-code blob-code-inner js-file-line">country that you have reason to believe are valid.</td>
-        </tr>
-        <tr>
-          <td id="L500" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="500"></td>
-          <td id="LC500" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L501" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="501"></td>
-          <td id="LC501" class="blob-code blob-code-inner js-file-line">  If, pursuant to or in connection with a single transaction or</td>
-        </tr>
-        <tr>
-          <td id="L502" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="502"></td>
-          <td id="LC502" class="blob-code blob-code-inner js-file-line">arrangement, you convey, or propagate by procuring conveyance of, a</td>
-        </tr>
-        <tr>
-          <td id="L503" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="503"></td>
-          <td id="LC503" class="blob-code blob-code-inner js-file-line">covered work, and grant a patent license to some of the parties</td>
-        </tr>
-        <tr>
-          <td id="L504" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="504"></td>
-          <td id="LC504" class="blob-code blob-code-inner js-file-line">receiving the covered work authorizing them to use, propagate, modify</td>
-        </tr>
-        <tr>
-          <td id="L505" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="505"></td>
-          <td id="LC505" class="blob-code blob-code-inner js-file-line">or convey a specific copy of the covered work, then the patent license</td>
-        </tr>
-        <tr>
-          <td id="L506" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="506"></td>
-          <td id="LC506" class="blob-code blob-code-inner js-file-line">you grant is automatically extended to all recipients of the covered</td>
-        </tr>
-        <tr>
-          <td id="L507" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="507"></td>
-          <td id="LC507" class="blob-code blob-code-inner js-file-line">work and works based on it.</td>
-        </tr>
-        <tr>
-          <td id="L508" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="508"></td>
-          <td id="LC508" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L509" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="509"></td>
-          <td id="LC509" class="blob-code blob-code-inner js-file-line">  A patent license is &quot;discriminatory&quot; if it does not include within</td>
-        </tr>
-        <tr>
-          <td id="L510" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="510"></td>
-          <td id="LC510" class="blob-code blob-code-inner js-file-line">the scope of its coverage, prohibits the exercise of, or is</td>
-        </tr>
-        <tr>
-          <td id="L511" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="511"></td>
-          <td id="LC511" class="blob-code blob-code-inner js-file-line">conditioned on the non-exercise of one or more of the rights that are</td>
-        </tr>
-        <tr>
-          <td id="L512" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="512"></td>
-          <td id="LC512" class="blob-code blob-code-inner js-file-line">specifically granted under this License.  You may not convey a covered</td>
-        </tr>
-        <tr>
-          <td id="L513" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="513"></td>
-          <td id="LC513" class="blob-code blob-code-inner js-file-line">work if you are a party to an arrangement with a third party that is</td>
-        </tr>
-        <tr>
-          <td id="L514" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="514"></td>
-          <td id="LC514" class="blob-code blob-code-inner js-file-line">in the business of distributing software, under which you make payment</td>
-        </tr>
-        <tr>
-          <td id="L515" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="515"></td>
-          <td id="LC515" class="blob-code blob-code-inner js-file-line">to the third party based on the extent of your activity of conveying</td>
-        </tr>
-        <tr>
-          <td id="L516" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="516"></td>
-          <td id="LC516" class="blob-code blob-code-inner js-file-line">the work, and under which the third party grants, to any of the</td>
-        </tr>
-        <tr>
-          <td id="L517" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="517"></td>
-          <td id="LC517" class="blob-code blob-code-inner js-file-line">parties who would receive the covered work from you, a discriminatory</td>
-        </tr>
-        <tr>
-          <td id="L518" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="518"></td>
-          <td id="LC518" class="blob-code blob-code-inner js-file-line">patent license (a) in connection with copies of the covered work</td>
-        </tr>
-        <tr>
-          <td id="L519" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="519"></td>
-          <td id="LC519" class="blob-code blob-code-inner js-file-line">conveyed by you (or copies made from those copies), or (b) primarily</td>
-        </tr>
-        <tr>
-          <td id="L520" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="520"></td>
-          <td id="LC520" class="blob-code blob-code-inner js-file-line">for and in connection with specific products or compilations that</td>
-        </tr>
-        <tr>
-          <td id="L521" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="521"></td>
-          <td id="LC521" class="blob-code blob-code-inner js-file-line">contain the covered work, unless you entered into that arrangement,</td>
-        </tr>
-        <tr>
-          <td id="L522" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="522"></td>
-          <td id="LC522" class="blob-code blob-code-inner js-file-line">or that patent license was granted, prior to 28 March 2007.</td>
-        </tr>
-        <tr>
-          <td id="L523" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="523"></td>
-          <td id="LC523" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L524" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="524"></td>
-          <td id="LC524" class="blob-code blob-code-inner js-file-line">  Nothing in this License shall be construed as excluding or limiting</td>
-        </tr>
-        <tr>
-          <td id="L525" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="525"></td>
-          <td id="LC525" class="blob-code blob-code-inner js-file-line">any implied license or other defenses to infringement that may</td>
-        </tr>
-        <tr>
-          <td id="L526" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="526"></td>
-          <td id="LC526" class="blob-code blob-code-inner js-file-line">otherwise be available to you under applicable patent law.</td>
-        </tr>
-        <tr>
-          <td id="L527" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="527"></td>
-          <td id="LC527" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L528" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="528"></td>
-          <td id="LC528" class="blob-code blob-code-inner js-file-line">  12. No Surrender of Others&#39; Freedom.</td>
-        </tr>
-        <tr>
-          <td id="L529" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="529"></td>
-          <td id="LC529" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L530" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="530"></td>
-          <td id="LC530" class="blob-code blob-code-inner js-file-line">  If conditions are imposed on you (whether by court order, agreement or</td>
-        </tr>
-        <tr>
-          <td id="L531" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="531"></td>
-          <td id="LC531" class="blob-code blob-code-inner js-file-line">otherwise) that contradict the conditions of this License, they do not</td>
-        </tr>
-        <tr>
-          <td id="L532" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="532"></td>
-          <td id="LC532" class="blob-code blob-code-inner js-file-line">excuse you from the conditions of this License.  If you cannot convey a</td>
-        </tr>
-        <tr>
-          <td id="L533" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="533"></td>
-          <td id="LC533" class="blob-code blob-code-inner js-file-line">covered work so as to satisfy simultaneously your obligations under this</td>
-        </tr>
-        <tr>
-          <td id="L534" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="534"></td>
-          <td id="LC534" class="blob-code blob-code-inner js-file-line">License and any other pertinent obligations, then as a consequence you may</td>
-        </tr>
-        <tr>
-          <td id="L535" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="535"></td>
-          <td id="LC535" class="blob-code blob-code-inner js-file-line">not convey it at all.  For example, if you agree to terms that obligate you</td>
-        </tr>
-        <tr>
-          <td id="L536" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="536"></td>
-          <td id="LC536" class="blob-code blob-code-inner js-file-line">to collect a royalty for further conveying from those to whom you convey</td>
-        </tr>
-        <tr>
-          <td id="L537" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="537"></td>
-          <td id="LC537" class="blob-code blob-code-inner js-file-line">the Program, the only way you could satisfy both those terms and this</td>
-        </tr>
-        <tr>
-          <td id="L538" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="538"></td>
-          <td id="LC538" class="blob-code blob-code-inner js-file-line">License would be to refrain entirely from conveying the Program.</td>
-        </tr>
-        <tr>
-          <td id="L539" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="539"></td>
-          <td id="LC539" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L540" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="540"></td>
-          <td id="LC540" class="blob-code blob-code-inner js-file-line">  13. Remote Network Interaction; Use with the GNU General Public License.</td>
-        </tr>
-        <tr>
-          <td id="L541" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="541"></td>
-          <td id="LC541" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L542" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="542"></td>
-          <td id="LC542" class="blob-code blob-code-inner js-file-line">  Notwithstanding any other provision of this License, if you modify the</td>
-        </tr>
-        <tr>
-          <td id="L543" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="543"></td>
-          <td id="LC543" class="blob-code blob-code-inner js-file-line">Program, your modified version must prominently offer all users</td>
-        </tr>
-        <tr>
-          <td id="L544" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="544"></td>
-          <td id="LC544" class="blob-code blob-code-inner js-file-line">interacting with it remotely through a computer network (if your version</td>
-        </tr>
-        <tr>
-          <td id="L545" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="545"></td>
-          <td id="LC545" class="blob-code blob-code-inner js-file-line">supports such interaction) an opportunity to receive the Corresponding</td>
-        </tr>
-        <tr>
-          <td id="L546" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="546"></td>
-          <td id="LC546" class="blob-code blob-code-inner js-file-line">Source of your version by providing access to the Corresponding Source</td>
-        </tr>
-        <tr>
-          <td id="L547" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="547"></td>
-          <td id="LC547" class="blob-code blob-code-inner js-file-line">from a network server at no charge, through some standard or customary</td>
-        </tr>
-        <tr>
-          <td id="L548" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="548"></td>
-          <td id="LC548" class="blob-code blob-code-inner js-file-line">means of facilitating copying of software.  This Corresponding Source</td>
-        </tr>
-        <tr>
-          <td id="L549" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="549"></td>
-          <td id="LC549" class="blob-code blob-code-inner js-file-line">shall include the Corresponding Source for any work covered by version 3</td>
-        </tr>
-        <tr>
-          <td id="L550" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="550"></td>
-          <td id="LC550" class="blob-code blob-code-inner js-file-line">of the GNU General Public License that is incorporated pursuant to the</td>
-        </tr>
-        <tr>
-          <td id="L551" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="551"></td>
-          <td id="LC551" class="blob-code blob-code-inner js-file-line">following paragraph.</td>
-        </tr>
-        <tr>
-          <td id="L552" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="552"></td>
-          <td id="LC552" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L553" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="553"></td>
-          <td id="LC553" class="blob-code blob-code-inner js-file-line">  Notwithstanding any other provision of this License, you have</td>
-        </tr>
-        <tr>
-          <td id="L554" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="554"></td>
-          <td id="LC554" class="blob-code blob-code-inner js-file-line">permission to link or combine any covered work with a work licensed</td>
-        </tr>
-        <tr>
-          <td id="L555" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="555"></td>
-          <td id="LC555" class="blob-code blob-code-inner js-file-line">under version 3 of the GNU General Public License into a single</td>
-        </tr>
-        <tr>
-          <td id="L556" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="556"></td>
-          <td id="LC556" class="blob-code blob-code-inner js-file-line">combined work, and to convey the resulting work.  The terms of this</td>
-        </tr>
-        <tr>
-          <td id="L557" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="557"></td>
-          <td id="LC557" class="blob-code blob-code-inner js-file-line">License will continue to apply to the part which is the covered work,</td>
-        </tr>
-        <tr>
-          <td id="L558" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="558"></td>
-          <td id="LC558" class="blob-code blob-code-inner js-file-line">but the work with which it is combined will remain governed by version</td>
-        </tr>
-        <tr>
-          <td id="L559" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="559"></td>
-          <td id="LC559" class="blob-code blob-code-inner js-file-line">3 of the GNU General Public License.</td>
-        </tr>
-        <tr>
-          <td id="L560" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="560"></td>
-          <td id="LC560" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L561" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="561"></td>
-          <td id="LC561" class="blob-code blob-code-inner js-file-line">  14. Revised Versions of this License.</td>
-        </tr>
-        <tr>
-          <td id="L562" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="562"></td>
-          <td id="LC562" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L563" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="563"></td>
-          <td id="LC563" class="blob-code blob-code-inner js-file-line">  The Free Software Foundation may publish revised and/or new versions of</td>
-        </tr>
-        <tr>
-          <td id="L564" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="564"></td>
-          <td id="LC564" class="blob-code blob-code-inner js-file-line">the GNU Affero General Public License from time to time.  Such new versions</td>
-        </tr>
-        <tr>
-          <td id="L565" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="565"></td>
-          <td id="LC565" class="blob-code blob-code-inner js-file-line">will be similar in spirit to the present version, but may differ in detail to</td>
-        </tr>
-        <tr>
-          <td id="L566" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="566"></td>
-          <td id="LC566" class="blob-code blob-code-inner js-file-line">address new problems or concerns.</td>
-        </tr>
-        <tr>
-          <td id="L567" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="567"></td>
-          <td id="LC567" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L568" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="568"></td>
-          <td id="LC568" class="blob-code blob-code-inner js-file-line">  Each version is given a distinguishing version number.  If the</td>
-        </tr>
-        <tr>
-          <td id="L569" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="569"></td>
-          <td id="LC569" class="blob-code blob-code-inner js-file-line">Program specifies that a certain numbered version of the GNU Affero General</td>
-        </tr>
-        <tr>
-          <td id="L570" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="570"></td>
-          <td id="LC570" class="blob-code blob-code-inner js-file-line">Public License &quot;or any later version&quot; applies to it, you have the</td>
-        </tr>
-        <tr>
-          <td id="L571" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="571"></td>
-          <td id="LC571" class="blob-code blob-code-inner js-file-line">option of following the terms and conditions either of that numbered</td>
-        </tr>
-        <tr>
-          <td id="L572" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="572"></td>
-          <td id="LC572" class="blob-code blob-code-inner js-file-line">version or of any later version published by the Free Software</td>
-        </tr>
-        <tr>
-          <td id="L573" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="573"></td>
-          <td id="LC573" class="blob-code blob-code-inner js-file-line">Foundation.  If the Program does not specify a version number of the</td>
-        </tr>
-        <tr>
-          <td id="L574" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="574"></td>
-          <td id="LC574" class="blob-code blob-code-inner js-file-line">GNU Affero General Public License, you may choose any version ever published</td>
-        </tr>
-        <tr>
-          <td id="L575" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="575"></td>
-          <td id="LC575" class="blob-code blob-code-inner js-file-line">by the Free Software Foundation.</td>
-        </tr>
-        <tr>
-          <td id="L576" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="576"></td>
-          <td id="LC576" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L577" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="577"></td>
-          <td id="LC577" class="blob-code blob-code-inner js-file-line">  If the Program specifies that a proxy can decide which future</td>
-        </tr>
-        <tr>
-          <td id="L578" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="578"></td>
-          <td id="LC578" class="blob-code blob-code-inner js-file-line">versions of the GNU Affero General Public License can be used, that proxy&#39;s</td>
-        </tr>
-        <tr>
-          <td id="L579" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="579"></td>
-          <td id="LC579" class="blob-code blob-code-inner js-file-line">public statement of acceptance of a version permanently authorizes you</td>
-        </tr>
-        <tr>
-          <td id="L580" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="580"></td>
-          <td id="LC580" class="blob-code blob-code-inner js-file-line">to choose that version for the Program.</td>
-        </tr>
-        <tr>
-          <td id="L581" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="581"></td>
-          <td id="LC581" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L582" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="582"></td>
-          <td id="LC582" class="blob-code blob-code-inner js-file-line">  Later license versions may give you additional or different</td>
-        </tr>
-        <tr>
-          <td id="L583" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="583"></td>
-          <td id="LC583" class="blob-code blob-code-inner js-file-line">permissions.  However, no additional obligations are imposed on any</td>
-        </tr>
-        <tr>
-          <td id="L584" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="584"></td>
-          <td id="LC584" class="blob-code blob-code-inner js-file-line">author or copyright holder as a result of your choosing to follow a</td>
-        </tr>
-        <tr>
-          <td id="L585" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="585"></td>
-          <td id="LC585" class="blob-code blob-code-inner js-file-line">later version.</td>
-        </tr>
-        <tr>
-          <td id="L586" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="586"></td>
-          <td id="LC586" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L587" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="587"></td>
-          <td id="LC587" class="blob-code blob-code-inner js-file-line">  15. Disclaimer of Warranty.</td>
-        </tr>
-        <tr>
-          <td id="L588" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="588"></td>
-          <td id="LC588" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L589" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="589"></td>
-          <td id="LC589" class="blob-code blob-code-inner js-file-line">  THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY</td>
-        </tr>
-        <tr>
-          <td id="L590" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="590"></td>
-          <td id="LC590" class="blob-code blob-code-inner js-file-line">APPLICABLE LAW.  EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT</td>
-        </tr>
-        <tr>
-          <td id="L591" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="591"></td>
-          <td id="LC591" class="blob-code blob-code-inner js-file-line">HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM &quot;AS IS&quot; WITHOUT WARRANTY</td>
-        </tr>
-        <tr>
-          <td id="L592" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="592"></td>
-          <td id="LC592" class="blob-code blob-code-inner js-file-line">OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO,</td>
-        </tr>
-        <tr>
-          <td id="L593" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="593"></td>
-          <td id="LC593" class="blob-code blob-code-inner js-file-line">THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR</td>
-        </tr>
-        <tr>
-          <td id="L594" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="594"></td>
-          <td id="LC594" class="blob-code blob-code-inner js-file-line">PURPOSE.  THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM</td>
-        </tr>
-        <tr>
-          <td id="L595" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="595"></td>
-          <td id="LC595" class="blob-code blob-code-inner js-file-line">IS WITH YOU.  SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF</td>
-        </tr>
-        <tr>
-          <td id="L596" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="596"></td>
-          <td id="LC596" class="blob-code blob-code-inner js-file-line">ALL NECESSARY SERVICING, REPAIR OR CORRECTION.</td>
-        </tr>
-        <tr>
-          <td id="L597" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="597"></td>
-          <td id="LC597" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L598" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="598"></td>
-          <td id="LC598" class="blob-code blob-code-inner js-file-line">  16. Limitation of Liability.</td>
-        </tr>
-        <tr>
-          <td id="L599" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="599"></td>
-          <td id="LC599" class="blob-code blob-code-inner js-file-line">
-</td>
-        </tr>
-        <tr>
-          <td id="L600" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="600"></td>
-          <td id="LC600" class="blob-code blob-code-inner js-file-line">  IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING</td>
-        </tr>
-        <tr>
-          <td id="L601" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="601"></td>
-          <td id="LC601" class="blob-code blob-code-inner js-file-line">WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS</td>
-        </tr>
-        <tr>
-          <td id="L602" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="602"></td>
-          <td id="LC602" class="blob-code blob-code-inner js-file-line">THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY</td>
-        </tr>
-        <tr>
-          <td id="L603" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="603"></td>
-          <td id="LC603" class="blob-code blob-code-inner js-file-line">GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE</td>
-        </tr>
-        <tr>
-          <td id="L604" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="604"></td>
-          <td id="LC604" class="blob-code blob-code-inner js-file-line">USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF</td>
-        </tr>
-        <tr>
-          <td id="L605" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="605"></td>
-          <td id="LC605" class="blob-code blob-code-inner js-file-line">DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD</td>
-        </tr>
-        <tr>
-          <td id="L606" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="606"></td>
-          <td id="LC606" class="blob-code blob-code-inner js-file-line">PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),</td>
-        </tr>
-        <tr>
-          <td id="L607" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="607"></td>
-          <td id="LC607" class="blob-code blob-code-inner js-file-line">EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF</td>
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-          <td id="LC608" class="blob-code blob-code-inner js-file-line">SUCH DAMAGES.</td>
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-          <td id="LC610" class="blob-code blob-code-inner js-file-line">  17. Interpretation of Sections 15 and 16.</td>
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-          <td id="L612" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="612"></td>
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-          <td id="L623" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="623"></td>
-          <td id="LC623" class="blob-code blob-code-inner js-file-line">  If you develop a new program, and you want it to be of the greatest</td>
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-          <td id="L624" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="624"></td>
-          <td id="LC624" class="blob-code blob-code-inner js-file-line">possible use to the public, the best way to achieve this is to make it</td>
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-          <td id="LC625" class="blob-code blob-code-inner js-file-line">free software which everyone can redistribute and change under these terms.</td>
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-          <td id="L629" class="blob-num js-line-number js-code-nav-line-number js-blob-rnum" data-line-number="629"></td>
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+                    GNU AFFERO GENERAL PUBLIC LICENSE
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+or that patent license was granted, prior to 28 March 2007.
+
+  Nothing in this License shall be construed as excluding or limiting
+any implied license or other defenses to infringement that may
+otherwise be available to you under applicable patent law.
+
+  12. No Surrender of Others' Freedom.
+
+  If conditions are imposed on you (whether by court order, agreement or
+otherwise) that contradict the conditions of this License, they do not
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+to collect a royalty for further conveying from those to whom you convey
+the Program, the only way you could satisfy both those terms and this
+License would be to refrain entirely from conveying the Program.
+
+  13. Remote Network Interaction; Use with the GNU General Public License.
+
+  Notwithstanding any other provision of this License, if you modify the
+Program, your modified version must prominently offer all users
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+3 of the GNU General Public License.
+
+  14. Revised Versions of this License.
+
+  The Free Software Foundation may publish revised and/or new versions of
+the GNU Affero General Public License from time to time.  Such new versions
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+address new problems or concerns.
+
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+
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+permissions.  However, no additional obligations are imposed on any
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+  15. Disclaimer of Warranty.
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+  THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
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+EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
+SUCH DAMAGES.
+
+  17. Interpretation of Sections 15 and 16.
+
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+above cannot be given local legal effect according to their terms,
+reviewing courts shall apply local law that most closely approximates
+an absolute waiver of all civil liability in connection with the
+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
+                     END OF TERMS AND CONDITIONS
+
+            How to Apply These Terms to Your New Programs
+
+  If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
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+to attach them to the start of each source file to most effectively
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+the "copyright" line and a pointer to where the full notice is found.
+
+    <one line to give the program's name and a brief idea of what it does.>
+    Copyright (C) <year>  <name of author>
+
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU Affero General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU Affero General Public License for more details.
+
+    You should have received a copy of the GNU Affero General Public License
+    along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+Also add information on how to contact you by electronic and paper mail.
+
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+interface could display a "Source" link that leads users to an archive
+of the code.  There are many ways you could offer source, and different
+solutions will be better for different programs; see section 13 for the
+specific requirements.
+
+  You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU AGPL, see
+<http://www.gnu.org/licenses/>.
diff --git a/recipes/nrpys/build.sh b/recipes/nrpys/build.sh
index c08897288c011..6c41a389a5494 100644
--- a/recipes/nrpys/build.sh
+++ b/recipes/nrpys/build.sh
@@ -11,4 +11,4 @@ mkdir -p ${PREFIX}/bin
 
 # build shared Python module with Rust
 maturin build --release --strip -f
-${PYTHON} -m pip install -vv .
+${PYTHON} -m pip install -vvv --no-deps --no-build-isolation .
diff --git a/recipes/nrpys/cargo.patch b/recipes/nrpys/cargo.patch
new file mode 100644
index 0000000000000..71fb4191700c6
--- /dev/null
+++ b/recipes/nrpys/cargo.patch
@@ -0,0 +1,9 @@
+--- a/Cargo.toml
++++ b/Cargo.toml
+@@ -14,5 +14,5 @@ crate-type = ["cdylib"]
+ 
+ [dependencies]
+ nrps-rs = "0.2.1"
+-pyo3 = { version = "0.18.0", features = ["extension-module"] }
++pyo3 = { version = "0.19.0", features = ["abi3-py38"] }
+ thiserror = "1.0.38"
diff --git a/recipes/nrpys/meta.yaml b/recipes/nrpys/meta.yaml
index 587bb75ae1e65..e1a1b94498112 100644
--- a/recipes/nrpys/meta.yaml
+++ b/recipes/nrpys/meta.yaml
@@ -7,24 +7,27 @@ package:
   version: {{ version }}
 
 build:
-  number: 1
-  noarch: generic
+  number: 3
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x.x") }}
 
 source:
   url: https://github.com/kblin/nrpys/archive/refs/tags/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
-  patch:
-    - patch
+  patches:
+    - cargo.patch
+    - pyproject.patch
 
 requirements:
   host:
-    - python >=3.7
+    - python >=3.8
     - pip
     - rust
     - maturin
     - zlib
   run:
-    - python >=3.7
+    - python >=3.8
 
 test:
   imports:
@@ -32,6 +35,6 @@ test:
 
 about:
   home: "https://github.com/kblin/nrpys"
-  license: GPL3
+  license: AGPL-3.0-or-later
   license_file: LICENSE.txt
   summary: "Python language bindings for nrps-rs substrate specificity predictor."
diff --git a/recipes/nrpys/pyproject.patch b/recipes/nrpys/pyproject.patch
new file mode 100644
index 0000000000000..2a8640ef4169d
--- /dev/null
+++ b/recipes/nrpys/pyproject.patch
@@ -0,0 +1,20 @@
+--- a/pyproject.toml
++++ b/pyproject.toml
+@@ -1,10 +1,10 @@
+ [build-system]
+-requires = ["maturin>=0.14,<0.15"]
++requires = ["maturin>=1.0,<2.0"]
+ build-backend = "maturin"
+ 
+ [project]
+ name = "nrpys"
+-requires-python = ">=3.7"
++requires-python = ">=3.8"
+ classifiers = [
+     "Programming Language :: Rust",
+     "Programming Language :: Python :: Implementation :: CPython",
+@@ -13,3 +13,4 @@ classifiers = [
+ 
+ [tool.maturin]
+ python-source = "python"
++features = ["pyo3/extension-module"]
diff --git a/recipes/ntedit/build.sh b/recipes/ntedit/build.sh
index 310cbe6d76b8f..4e5a499abd72a 100644
--- a/recipes/ntedit/build.sh
+++ b/recipes/ntedit/build.sh
@@ -1,16 +1,9 @@
 #!/bin/bash
-export CFLAGS="-I$PREFIX/include"
-export CPPFLAGS="-I$PREFIX/include"
-export CXXFLAGS="-I$PREFIX/include"
-export LDFLAGS="-L$PREFIX/lib"
-export CPATH=${PREFIX}/include
-export C_INCLUDE_PATH=${C_INCLUDE_PATH}:${PREFIX}/include
-export LIBRARY_PATH="${PREFIX}/lib"
-export LD_LIBRARY_PATH="${PREFIX}/lib"
-if [[ "$(uname)" == Darwin ]]; then
-    export LDFLAGS="$LDFLAGS -headerpad_max_install_names"
-fi
 
-make ntedit
 mkdir -p $PREFIX/bin
-mv ntedit $PREFIX/bin
+
+export CXXFLAGS="${CXXFLAGS} -D_LIBCPP_DISABLE_AVAILABILITY"
+
+meson setup build --prefix=$PREFIX --strip
+cd build
+ninja -v install
diff --git a/recipes/ntedit/meta.yaml b/recipes/ntedit/meta.yaml
index efae8da960843..b88758d97416c 100644
--- a/recipes/ntedit/meta.yaml
+++ b/recipes/ntedit/meta.yaml
@@ -1,38 +1,58 @@
 {% set name = "ntedit" %}
-{% set version = "1.3.5" %}
+{% set version = "2.0.2" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 build:
-  number: 4
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 source:
-  url: https://github.com/bcgsc/ntEdit/archive/v{{ version }}.tar.gz
-  sha256: bbf847bd597256f2a7f8eeaca9a61b73b7040a1aadf52252911149518819324e
+  url: https://github.com/bcgsc/ntEdit/releases/download/v{{ version }}/ntEdit-{{ version }}.tar.gz
+  sha256: 314bc1a39c2d382786ee64d83a1b8c4519e5c9feb0203b1b7f4ab0d9087cf6c5
 
 requirements:
   build:
-    - make
     - {{ compiler('cxx') }}
-    - llvm-openmp # [osx]
+    - cmake
+    - make
     - automake
     - autoconf
-    - perl
+    - meson
+    - ninja
   host:
+    - perl
     - zlib
+    - btllib
+    - llvm-openmp  # [osx]
+    - boost-cpp
+    - python >=3.9
   run:
-    - llvm-openmp # [osx]
-    - zlib
-    - ntHits ==0.0.1
+    - llvm-openmp  # [osx]
+    - nthits >=1.0.0
+    - ntcard
+    - btllib
+    - snakemake-minimal
+    - boost-cpp
 
 test:
   commands:
     - ntedit --help
+    - run-ntedit --help
 
 about:
   home: https://github.com/bcgsc/ntEdit
-  license: GPL-3.0
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
-  summary: 'ultra fast, scalable genome assembly polishing and snv detection'
+  summary: 'Ultrafast, lightweight, scalable genome assembly polishing, and SNV detection & annotation'
+  doc_url: https://github.com/bcgsc/ntEdit/blob/master/README.md
+  dev_url: https://github.com/bcgsc/ntEdit
+
+extra:
+  identifiers:
+    - doi:10.1093/bioinformatics/btz400
+    - biotools:ntEdit
diff --git a/recipes/nthits/meta.yaml b/recipes/nthits/meta.yaml
index 17a3ce06be503..ef933a0b68fd5 100644
--- a/recipes/nthits/meta.yaml
+++ b/recipes/nthits/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "nthits" %}
-{% set version = "1.0.1" %}
+{% set version = "1.0.3" %}
 
 package:
   name: nthits
@@ -7,18 +7,20 @@ package:
 
 source:
   url: https://github.com/bcgsc/ntHits/releases/download/v{{ version }}/{{ name|lower }}-{{ version }}.tar.gz
-  sha256: 1c821869bb275118c8f5638b9e823398ed9cd92c086293b2cd80c183d5a9f929
+  sha256: ee50e825f2c99f859031fa7e5bfe4cbbc71357108c32863e31b40b950cc077b2
 
 build:
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('nthits', max_pin="x") }}
 
 requirements:
   build:
     - {{ compiler('cxx') }}
+    - cmake
   host:
     - meson
     - ninja
-    - cmake
     - btllib >=1.5.0
     - llvm-openmp  # [osx]
     - libgomp      # [linux]
@@ -33,5 +35,6 @@ test:
 about:
   home: https://github.com/bcgsc/ntHits
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary: ntHits is a tool for efficiently counting and filtering k-mers based on their frequencies
diff --git a/recipes/ntjoin/meta.yaml b/recipes/ntjoin/meta.yaml
index 36453ca297cc2..d49a1ecaaa371 100644
--- a/recipes/ntjoin/meta.yaml
+++ b/recipes/ntjoin/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.1.1" %}
+{% set version = "1.1.4" %}
 
 package:
   name: ntjoin
@@ -6,21 +6,21 @@ package:
 
 source:
   url: https://github.com/bcgsc/ntJoin/releases/download/v{{ version }}/ntJoin-{{ version }}.tar.gz 
-  sha256: fb2e906be1f85cbdc9a6d3857377c4faa22c55b24b9016be6cf0923cf9e6282b 
+  sha256: ec24330e11ea63948d1b124273dae79e80088d672f7e536e7d97787f0c2bb644 
 
 build:
-  number: 2
-  skip: True  # [py<38]
+  number: 0
+  noarch: generic
+  run_exports: 
+    - {{ pin_subpackage("ntjoin", max_pin="x") }}
 
 requirements:
-  build:
-    - {{ compiler('cxx') }}
   host:
     - make
     - python
     - pip
     - zlib
-    - btllib <=1.4.10
+    - btllib
   run:
     - python-igraph
     - pybedtools
@@ -31,7 +31,7 @@ requirements:
     - python
     - zlib
     - make
-    - btllib <=1.4.10
+    - btllib
 
 test:
   commands:
diff --git a/recipes/ntlink/build.sh b/recipes/ntlink/build.sh
index 2d7d0044c363e..6b4436d0ed2b0 100644
--- a/recipes/ntlink/build.sh
+++ b/recipes/ntlink/build.sh
@@ -8,6 +8,6 @@ cp ntLink* ${PREFIX}/bin/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
 cp bin/*py ${PREFIX}/bin/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM/bin
 
 echo "#!/bin/bash" > ${PREFIX}/bin/ntLink
-echo "make -f $(command -v ${PREFIX}/bin/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM/ntLink) \$@" >> ${PREFIX}/bin/ntLink
+echo "make -f $(command -v ${PREFIX}/bin/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM/ntLink) \"\$@\"" >> ${PREFIX}/bin/ntLink
 echo "#!/bin/bash" > ${PREFIX}/bin/ntLink_rounds
-echo "make -f $(command -v ${PREFIX}/bin/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM/ntLink_rounds) \$@" >> ${PREFIX}/bin/ntLink_rounds
+echo "make -f $(command -v ${PREFIX}/bin/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM/ntLink_rounds) \"\$@\"" >> ${PREFIX}/bin/ntLink_rounds
diff --git a/recipes/ntlink/meta.yaml b/recipes/ntlink/meta.yaml
index 308aee04aaa73..576cbcab302c5 100644
--- a/recipes/ntlink/meta.yaml
+++ b/recipes/ntlink/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.3.9" %}
+{% set version = "1.3.10" %}
 
 package:
   name: ntlink
@@ -6,21 +6,21 @@ package:
 
 source:
   url: https://github.com/bcgsc/ntLink/releases/download/v{{ version }}/ntLink-{{ version }}.tar.gz 
-  sha256: 3a6fe7ca9c7a0226cf51b7e55804e235ac2b959e82a30f9bce55b9caea5bb03b 
+  sha256: 248ccae217dd7ed2e4664c6b48235f8db2ba24d8896b8315f6e657f19d5f7085 
 
 build:
-  number: 1
-  skip: True  # [py<38 or py > 39]
+  number: 0
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage('ntlink', max_pin="x") }}
 
 requirements:
-  build:
-    - {{ compiler('cxx') }}
   host:
     - make
     - python
     - pip
     - zlib
-    - btllib <=1.4.10
+    - btllib <1.7.0
   run:
     - python
     - zlib
@@ -28,12 +28,13 @@ requirements:
     - numpy
     - python-igraph
     - abyss >=2.3.0
-    - btllib
+    - btllib <1.7.0
 
 
 test:
   commands:
     - ntLink help
+    - ntLink_rounds help
 
 about:
   home: https://github.com/bcgsc/ntLink
diff --git a/recipes/ntm-profiler/meta.yaml b/recipes/ntm-profiler/meta.yaml
index ef14c5c1eb195..d920b448d61cc 100644
--- a/recipes/ntm-profiler/meta.yaml
+++ b/recipes/ntm-profiler/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "ntm-profiler" %}
-{% set version = "0.2.2" %}
-{% set sha256 = "37f11f9c56cccc158207a40eced19f94b4d1e6d35afefcc878c938cbcb5a580d" %}
+{% set version = "0.4.0" %}
+{% set sha256 = "6d9625d3b0ad2ee8a757cf6ab69381fd8d63c7d9adde76e56076b616f3039deb" %}
 
 package:
   name: {{name}}
@@ -12,8 +12,10 @@ source:
 
 build:
   noarch: python
-  script: python -m pip install --no-deps --ignore-installed .
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation . -vvv
   number: 0
+  run_exports:
+    - {{ pin_subpackage('ntm-profiler', max_pin="x") }}
 
 requirements:
   host:
@@ -26,18 +28,19 @@ requirements:
   run:
     - python >=3.7
     - mash =2.3
-    - pathogen-profiler =2.0.4
+    - pathogen-profiler =4.1.0
     - jinja2
+    - sourmash >=4.8.3
 
 test:
   imports:
     - ntm_profiler
-
   commands:
     - ntm-profiler -h
 
 about:
   home: https://github.com/jodyphelan/NTM-Profiler
-  license: GPL3
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
   summary: Profiling tool for NTM to detect species and resistance from WGS data
diff --git a/recipes/ntroot/build.sh b/recipes/ntroot/build.sh
new file mode 100644
index 0000000000000..65498faa460dd
--- /dev/null
+++ b/recipes/ntroot/build.sh
@@ -0,0 +1,7 @@
+#!/bin/bash
+
+
+mkdir -p ${PREFIX}/bin
+cp ntroot ${PREFIX}/bin
+cp ntRootAncestryPredictor.pl ${PREFIX}/bin
+cp ntroot_run_pipeline.smk ${PREFIX}/bin
diff --git a/recipes/ntroot/meta.yaml b/recipes/ntroot/meta.yaml
new file mode 100644
index 0000000000000..a7fc5c25f572e
--- /dev/null
+++ b/recipes/ntroot/meta.yaml
@@ -0,0 +1,37 @@
+{% set name = "ntRoot" %}
+{% set version = "1.0.1" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/bcgsc/ntRoot/releases/download/v{{ version }}/{{ name }}-{{ version }}.tar.gz
+  sha256: dd7a72cc0a2d92163a7ff7135e99e034d0831a6da16d3d8731039fff275502b5
+
+build:
+  number: 2
+  noarch: generic
+  run_exports: 
+    - {{ pin_subpackage("ntroot", max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.9
+    - perl
+  run:
+    - python >=3.9
+    - snakemake
+    - samtools
+    - ntedit >=2.0.2
+    - perl
+
+test:
+  commands:
+    - ntroot -h
+
+about:
+  home: https://github.com/bcgsc/ntroot
+  license: GPL-3.0
+  license_file: LICENSE
+  summary: 'Ancestry inference from genomic data'
diff --git a/recipes/ntsynt/build.sh b/recipes/ntsynt/build.sh
new file mode 100644
index 0000000000000..c0ea64c9342bc
--- /dev/null
+++ b/recipes/ntsynt/build.sh
@@ -0,0 +1,9 @@
+#!/bin/bash
+
+export CXXFLAGS="${CXXFLAGS} -D_LIBCPP_DISABLE_AVAILABILITY"
+
+# Build ntSynt
+mkdir -p ${PREFIX}/bin
+meson setup build --prefix ${PREFIX}
+cd build
+ninja install
diff --git a/recipes/ntsynt/meta.yaml b/recipes/ntsynt/meta.yaml
new file mode 100644
index 0000000000000..a7a17e135d81d
--- /dev/null
+++ b/recipes/ntsynt/meta.yaml
@@ -0,0 +1,49 @@
+{% set name = "ntSynt" %}
+{% set version = "1.0.1" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/bcgsc/ntSynt/releases/download/v{{ version }}/{{ name }}-{{ version }}.tar.gz
+  sha256: 71fa06c73481313518a504586b86a2a32cd49006ce6728b40eef0d455b9bb409
+
+build:
+  number: 0
+  run_exports: 
+    - {{ pin_subpackage("ntsynt", max_pin="x") }}
+
+requirements:
+  build:
+    - {{ compiler('cxx') }}
+    - cmake
+  host:
+    - python
+    - meson
+    - ninja
+    - llvm-openmp  # [osx]
+    - libgomp      # [linux]
+    - btllib <1.7.0
+  run:
+    - python
+    - btllib <1.7.0
+    - intervaltree
+    - pybedtools
+    - ncls
+    - python-igraph
+    - snakemake
+    - samtools
+    - seqtk
+
+test:
+  commands:
+    - ntSynt -h
+  imports:
+    - btllib
+
+about:
+  home: https://github.com/bcgsc/ntsynt
+  license: GPL-3.0
+  license_file: LICENSE
+  summary: 'Detecting multi-genome synteny blocks using minimizer graph mapping'
diff --git a/recipes/oakvar/meta.yaml b/recipes/oakvar/meta.yaml
index 894f673c4daf7..68a2e3b2a443a 100644
--- a/recipes/oakvar/meta.yaml
+++ b/recipes/oakvar/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "OakVar" %}
-{% set version = "2.9.34" %}
-{% set sha256 = "012ab98834bb6c2bbd2df613cc231b5d1a2ae00ea1cdb5e4a586679f86bee429" %}
+{% set version = "2.9.128" %}
+{% set sha256 = "76b224410ae09f903422a895e509579a24d039848583f27d33e5d4dd683297aa" %}
 
 package:
   name: {{ name|lower }}
@@ -13,9 +13,11 @@ source:
 build:
   number: 0
   noarch: python
-  script: {{ PYTHON }} -m pip install . --no-deps -vv
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
   entry_points:
     - ov=oakvar.__main__:main
+  run_exports:
+    - {{ pin_subpackage('oakvar', max_pin="x") }}
 
 requirements:
   host:
@@ -27,7 +29,7 @@ requirements:
     - requests-toolbelt
     - liftover
     - markdown
-    - aiohttp
+    - aiohttp <4.0.0
     - chardet >=3.0.4
     - aiosqlite
     - oyaml
@@ -63,7 +65,7 @@ about:
   summary: "OakVar - Genomic Variant Analysis Platform"
   dev_url: 'https://pypi.org/project/oakvar/'
   license: 'AGPL-3.0-or-later'
-  license_family: GPL
+  license_family: AGPL
   license_file: LICENSE
   doc_url: 'https://rkimoakbioinformatics.github.io/oakvar/'
 
diff --git a/recipes/oarfish/build.sh b/recipes/oarfish/build.sh
new file mode 100644
index 0000000000000..3c3929c054e07
--- /dev/null
+++ b/recipes/oarfish/build.sh
@@ -0,0 +1,7 @@
+#!/bin/bash -euo
+# Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
+# We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
+export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="$(pwd)/.cargo"
+
+# build statically linked binary with Rust
+RUST_BACKTRACE=1 cargo install --verbose --root $PREFIX --path .
diff --git a/recipes/oarfish/meta.yaml b/recipes/oarfish/meta.yaml
new file mode 100644
index 0000000000000..633bcc960583e
--- /dev/null
+++ b/recipes/oarfish/meta.yaml
@@ -0,0 +1,30 @@
+{% set version = "0.4.0" %}
+
+package:
+  name: oarfish
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("oarfish", max_pin="x.x") }}
+    
+source:
+  url: https://github.com/COMBINE-lab/oarfish/archive/v{{ version }}.tar.gz
+  sha256: 97e5d42d7797977a12790d9986a7e28c2ec264ca7a9637916178594e868080c8
+
+requirements:
+  build:
+    - {{ compiler('rust') }} 
+  host:
+  run:
+
+test:
+  commands:
+    - oarfish --help
+
+about:
+  home: https://github.com/COMBINE-lab/oarfish
+  license: BSD-3-Clause
+  license_file: LICENSE
+  summary: oarfish is a tool for fast, accurate and versatile transcript quantification from long-read RNA-seq data
diff --git a/recipes/oatk/build.sh b/recipes/oatk/build.sh
new file mode 100644
index 0000000000000..cff258fcdd73d
--- /dev/null
+++ b/recipes/oatk/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+
+# Use Conda environment variables for the C compiler and flags
+make CC=$CC CFLAGS="$CFLAGS $LDFLAGS"
+ls -la
+
+# Copying binaries to the $PREFIX/bin directory for them to be included in the Conda package
+mkdir -p $PREFIX/bin
+
+cp oatk path_to_fasta pathfinder hmm_annotation syncasm $PREFIX/bin/
+
diff --git a/recipes/oatk/meta.yaml b/recipes/oatk/meta.yaml
new file mode 100644
index 0000000000000..d3b3d028c7c8e
--- /dev/null
+++ b/recipes/oatk/meta.yaml
@@ -0,0 +1,40 @@
+package:
+  name: oatk
+  version: 1.0
+
+source:
+  url: https://github.com/c-zhou/oatk/archive/refs/tags/1.0.tar.gz
+  sha256: 5d1a1f44750dac04b436b99f6877b531b19e2e87a3eab956627fbb5e70af463c
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('oatk', max_pin="x") }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - make
+  host:
+    - zlib  
+  run:
+    - zlib
+    - hmmer >=3.4
+
+test:
+  commands:
+    - oatk 2>&1 | grep 'Usage'
+    - path_to_fasta 2>&1 | grep 'Usage'
+    - pathfinder 2>&1 | grep 'Usage'
+    - hmm_annotation 2>&1 | grep 'Usage'
+    - syncasm 2>&1 | grep 'Usage'
+    - nhmmscan 2>&1 | grep 'Usage'
+
+about:
+  home: https://github.com/c-zhou/oatk
+  license: MIT
+  summary: "Oatk: an organelle genome assembly toolkit"
+
+extra:
+  recipe-maintainers:
+    - LiaOb21
diff --git a/recipes/occultercut/build.sh b/recipes/occultercut/build.sh
new file mode 100644
index 0000000000000..9e2e9cc3758cf
--- /dev/null
+++ b/recipes/occultercut/build.sh
@@ -0,0 +1,17 @@
+#!/bin/bash
+set -eu -o pipefail
+#
+# CONDA build script variables
+#
+# $PREFIX The install prefix
+#
+
+mkdir -p "${PREFIX}/bin"
+
+export CPLUS_INCLUDE_PATH="${PREFIX}/include"
+export LIBRARY_PATH="${PREFIX}/lib"
+export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
+
+make CC="${GXX} ${LDFLAGS}" CFLAGS="${CFLAGS}"
+
+cp OcculterCut "${PREFIX}/bin"
diff --git a/recipes/occultercut/meta.yaml b/recipes/occultercut/meta.yaml
new file mode 100644
index 0000000000000..9cee221adf90c
--- /dev/null
+++ b/recipes/occultercut/meta.yaml
@@ -0,0 +1,44 @@
+{% set name = "occultercut" %}
+{% set version = "1.1" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: "https://downloads.sourceforge.net/project/{{ name }}/OcculterCut_v{{ version }}.tar.gz"
+  sha256: 34aa8c3ef4c216435b4f722ea25f9dc431ef6937e47cfeb5afa323d451cc06ae
+
+build:
+  number: 0
+  skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage('occultercut', max_pin="x") }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+  host:
+    - libgomp  # [linux]
+    - llvm-openmp  # [osx]
+  run:
+    - gnuplot
+
+test:
+  commands:
+    - OcculterCut | grep "OcculterCut"
+
+about:
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: COPYING
+  summary: 'A package for measuring the local GC-content bias in genomes and fungal species'
+  home: https://sourceforge.net/projects/occultercut
+
+extra:
+  identifiers:
+    - doi:10.1093/gbe/evw121
+  recipe-maintainers:
+    - KristinaGagalova
diff --git a/recipes/odgi/meta.yaml b/recipes/odgi/meta.yaml
index 43c3c89859e29..155ecb1d55d78 100644
--- a/recipes/odgi/meta.yaml
+++ b/recipes/odgi/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "odgi" %}
-{% set version = "0.8.3" %}
+{% set version = "0.8.6" %}
 
 package:
   name: "{{ name }}"
@@ -7,11 +7,13 @@ package:
 
 source:
   url: https://github.com/pangenome/{{ name }}/releases/download/v{{ version }}/{{ name }}-v{{ version }}.tar.gz
-  sha256: 13a63b8ada79851fd8ce5e7638dda1a8b75ef0346a5d93552ee2179256eb81bf
+  sha256: a6db190b782608082b14b42c660389aa18010791de1e2d07e29f7f61d8787754
 
 build:
   skip: True  # [osx or py27]
   number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   build:
diff --git a/recipes/olga/meta.yaml b/recipes/olga/meta.yaml
new file mode 100644
index 0000000000000..db0f8ab2d47a9
--- /dev/null
+++ b/recipes/olga/meta.yaml
@@ -0,0 +1,48 @@
+{% set name = "olga" %}
+{% set version = "1.2.4" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: 66b537a5c53aa840466c27fc51d22c24d57eb0124eeaf2cd2dfb6bbe53b38dda
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - olga-compute_pgen=olga.compute_pgen:main
+    - olga-generate_sequences=olga.generate_sequences:main
+  script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage('olga', max_pin="x") }}
+
+requirements:
+  host:
+    - pip
+    - python
+  run:
+    - python
+    - numpy >=1.20
+
+test:
+  imports:
+    - olga
+  commands:
+    - olga-compute_pgen --help
+    - olga-generate_sequences --help
+
+about:
+  home: "https://github.com/zsethna/OLGA"
+  license: "GPL-3.0-only"
+  license_family: GPL3
+  license_file: LICENSE
+  summary: "OLGA (Optimized Likelihood estimate of immunoGlobulin Amino-acid sequences) is a python 2.7/3.6 software 
+  developed to compute the generation probability of amino acid and in-frame nucleotide CDR3 sequences from a 
+  generative model of V(D)J recombination."
+
+extra:
+  recipe-maintainers:
+    - pavelvazquez
diff --git a/recipes/olivar/meta.yaml b/recipes/olivar/meta.yaml
index 374e02d3c441f..cacb4b80f87e8 100644
--- a/recipes/olivar/meta.yaml
+++ b/recipes/olivar/meta.yaml
@@ -1,23 +1,24 @@
-{% set version = "1.1.1" %}
+{% set version = "1.1.4" %}
 
 package:
   name: olivar
   version: '{{version}}'
 
 source:
-  url: 'https://gitlab.com/treangenlab/olivar/-/archive/v{{version}}/olivar-v{{version}}.tar.gz'
-  sha256: 0f0384116e82ce451116071216387bb548a19b189707cf5ba2afd7573a699330
+  url: 'https://github.com/treangenlab/Olivar/archive/refs/tags/v{{version}}.tar.gz'
+  sha256: d671e9cc3befd34ccaefc46dbf01d20de7de3bc7a23b66c30c47409509fb18de
 
 build:
   number: 0
   noarch: python
   script: {{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv && mkdir -p ${PREFIX}/bin && cp olivar ${PREFIX}/bin
+  run_exports:
+    - {{ pin_subpackage('olivar', max_pin="x") }}
 
 requirements:
   host:
-    - python
+    - python >=3.8
     - pip
-
   run:
     - python >=3.8
     - blast >=2.12.0
@@ -34,7 +35,8 @@ test:
     - olivar --help
 
 about:
-  home: https://gitlab.com/treangenlab/olivar
+  home: https://github.com/treangenlab/Olivar
   license: MIT
+  license_family: MIT
   license_file: LICENSE.txt
   summary: 'Olivar PCR tiling design'
diff --git a/recipes/omamer/meta.yaml b/recipes/omamer/meta.yaml
new file mode 100644
index 0000000000000..9bbc65251e0ac
--- /dev/null
+++ b/recipes/omamer/meta.yaml
@@ -0,0 +1,60 @@
+{% set name = "omamer" %}
+{% set version = "2.0.3" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/omamer-{{ version }}.tar.gz
+  sha256: c29fcaf5aa39fc3a3f2ff860159ce4df1832229751a6a623ef9af4eba503b525
+
+build:
+  entry_points:
+    - omamer = omamer.main:main
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.8
+    - pip
+  run:
+    - python >=3.8
+    - alive-progress
+    - biopython
+    - ete3
+    - numba
+    - numpy
+    - pandas >2.0.0
+    - property-manager
+    - rmath4
+    - scipy
+    - pytables
+    - tqdm  # 
+# Extra: build
+    - pysais
+
+test:
+  imports:
+    - omamer
+  commands:
+    - omamer --help
+
+about:
+  home: https://github.com/DessimozLab/omamer
+  summary: OMAmer - tree-driven and alignment-free protein assignment to sub-families
+  license: LGPL-3.0
+  license_file:
+    - LICENSE
+    - COPYING.LESSER
+    - COPYING
+
+extra:
+  recipe-maintainers:
+    - alpae
+  identifiers:
+    - doi:10.1093/bioinformatics/btab219
diff --git a/recipes/omark/meta.yaml b/recipes/omark/meta.yaml
new file mode 100644
index 0000000000000..8ae9f2fd269ec
--- /dev/null
+++ b/recipes/omark/meta.yaml
@@ -0,0 +1,50 @@
+{% set name = "omark" %}
+{% set version = "0.3.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/omark-{{ version }}.tar.gz
+  sha256: fa35e4ba3a8697aa06c3242394909e794a6ea574cfd1eaf90827ab9f98fc3f3b
+
+build:
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+  noarch: python
+
+requirements:
+  host:
+    - python
+    - pip
+  run:
+    - python
+    - biopython
+    - ete3
+    - omamer >=2.0.0
+    - matplotlib-base
+    - jinja2
+
+test:
+  imports:
+    - omark
+  commands:
+    - omark -h
+
+about:
+  home: https://github.com/DessimozLab/omark
+  summary: OMArk - Proteome quality assesment based on OMAmer placements
+  license: LGPL-3.0
+  license_file:
+    - LICENSE
+    - COPYING.LESSER
+    - COPYING
+
+extra:
+  recipe-maintainers:
+    - alpae
+  identifiers:
+    - doi:10.1101/2022.11.25.517970
diff --git a/recipes/oncopipe/meta.yaml b/recipes/oncopipe/meta.yaml
index f0143b4395607..faf2750244b58 100644
--- a/recipes/oncopipe/meta.yaml
+++ b/recipes/oncopipe/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "oncopipe" %}
-{% set version = "1.0.11" %}
-{% set sha256 = "cd2400ae50c86dc12e202f8631e32fb7ee54705404f346cc39c276fe1b710a47" %}
+{% set version = "1.0.12" %}
+{% set sha256 = "6de420aa7d58e1cc27a60aed163f26c72389c270b1e73218ec18f6e080f0fd1f" %}
 
 package:
   name: {{ name }}
@@ -14,6 +14,8 @@ build:
   script: pushd oncopipe && python -m pip install --no-deps --ignore-installed .
   noarch: python
   number: 0
+  run_exports:
+    - {{ pin_subpackage('oncopipe', max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/ont-fast5-api/meta.yaml b/recipes/ont-fast5-api/meta.yaml
index da79cfdf31793..61dcfc3873f45 100644
--- a/recipes/ont-fast5-api/meta.yaml
+++ b/recipes/ont-fast5-api/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "ont-fast5-api" %}
-{% set version = "4.1.1" %}
+{% set version = "4.1.3" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 71ea44087f310a2792d1a6c2ffbf5bc194367e769ce96a15961787f90ec7707b
+  sha256: 302d10ed87b439f8f22c2c06d45d68d017e47dd8df9bd48f155cad041f464b68
 
 build:
   number: 0
@@ -19,6 +19,8 @@ build:
     - compress_fast5=ont_fast5_api.conversion_tools.compress_fast5:main
     - check_compression=ont_fast5_api.conversion_tools.check_file_compression:main
   script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/ont-modkit/build.sh b/recipes/ont-modkit/build.sh
new file mode 100644
index 0000000000000..b0f0742fcfb6e
--- /dev/null
+++ b/recipes/ont-modkit/build.sh
@@ -0,0 +1,7 @@
+#!/bin/bash -euo
+
+export CFLAGS="${CFLAGS} -fcommon"
+export CXXFLAGS="${CFLAGS} -fcommon"
+
+# build statically linked binary with Rust
+RUST_BACKTRACE=1 cargo install --verbose --root ${PREFIX} --path .
diff --git a/recipes/ont-modkit/meta.yaml b/recipes/ont-modkit/meta.yaml
new file mode 100644
index 0000000000000..315dbe29f15e6
--- /dev/null
+++ b/recipes/ont-modkit/meta.yaml
@@ -0,0 +1,40 @@
+{% set name = "ont-modkit" %}
+{% set version = "0.3.0" %}
+{% set sha256 = "9da0de3c83335dc43aced0da89a920e939e9de6949a7e6d9e6680be9772441cc" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/nanoporetech/modkit/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+  
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("ont-modkit", max_pin="x.x") }}
+
+requirements:
+  build:
+    - {{ compiler('rust') }}
+    - {{ compiler('cxx') }}
+    - cmake
+    - make
+    - autoconf
+    - pkg-config
+  host:
+    - zlib
+
+test:
+  commands:
+    - modkit --version
+
+about:
+  home: https://github.com/nanoporetech/modkit
+  license: "Oxford Nanopore Technologies PLC. Public License Version 1.0"
+  license_family: PROPRIETARY
+  license_file: "LICENCE.txt"
+  summary: "A bioinformatics tool for working with modified bases in Oxford Nanopore sequencing data."
+  dev_url: "https://github.com/nanoporetech/modkit"
+  doc_url: "https://nanoporetech.github.io/modkit/"
diff --git a/recipes/ontime/meta.yaml b/recipes/ontime/meta.yaml
index 379b445a83dde..b0764d525b178 100644
--- a/recipes/ontime/meta.yaml
+++ b/recipes/ontime/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.1.3" %}
+{% set version = "0.3.1" %}
 {% set name = "ontime" %}
 
 package:
@@ -7,10 +7,12 @@ package:
 
 source:
   url: https://github.com/mbhall88/{{ name }}/archive/{{ version }}.tar.gz
-  sha256: ce1b03582969694f06e62dd7c2445fb17ba240b8539220cad0b79317b42d360f
+  sha256: 1caee3197d1032da38c55a47c3b626fe00b07831362e734fb2174747fca17fc4
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('ontime', max_pin="x.x") }}
 
 requirements:
   build:
@@ -24,6 +26,7 @@ test:
 about:
   home: https://github.com/mbhall88/ontime
   license: MIT
+  license_family: MIT
   summary: Extract subsets of ONT (Nanopore) reads based on time
   license_file: LICENSE
 
diff --git a/recipes/open-cravat/meta.yaml b/recipes/open-cravat/meta.yaml
index 83168bc9dd67c..b4d2eba72a284 100644
--- a/recipes/open-cravat/meta.yaml
+++ b/recipes/open-cravat/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "open-cravat" %}
-{% set version = "2.4.1" %}
+{% set version = "2.6.1" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,45 +7,49 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: f2223f573594a0e20bcaca9df42ad81e766a07cfa45c67189d549ff9ba99c00f
+  sha256: fb7f64702f026bad49d05de4f24d35ec36f958fe18b0cade48564feb8fc103c7
 
 build:
   number: 0
   entry_points:
     - oc=cravat.oc:main
   noarch: python
-  script: {{PYTHON}} -m pip install . -vv --ignore-installed --no-deps
+  script: {{PYTHON}} -m pip install . -vvv --no-build-isolation --no-deps --no-cache-dir
+  run_exports:
+    - {{ pin_subpackage('open-cravat', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - python
+    - python >=3.8
   run:
-    - aiohttp
+    - aiohttp <4.0.0
     - aiosqlite
+    - biopython
     - chardet >=3.0.4
     - intervaltree
     - markdown
+    - mpmath
     - nest-asyncio
     - openpyxl
     - oyaml
     - psutil
     - pyliftover
-    - python
+    - python >=3.8
     - pyyaml
     - requests
     - requests-toolbelt
     - twobitreader
     - websockets
     - xlsxwriter
-    - pyvcf
+    - pyvcf3
 
 test:
   imports:
     - cravat
 
 about:
-  home: "http://www.opencravat.org"
+  home: "https://www.opencravat.org"
   license: MIT
   license_family: MIT
   license_file: LICENSE
diff --git a/recipes/openms-meta/build.sh b/recipes/openms-meta/build.sh
index 3ab476e843b98..54dd40136fce4 100644
--- a/recipes/openms-meta/build.sh
+++ b/recipes/openms-meta/build.sh
@@ -46,6 +46,6 @@ cmake .. \
   -DBUILD_EXAMPLES=OFF
 
 # limit concurrent build jobs due to memory usage on CI
-make -j4 OpenMS TOPP UTILS
+make -j2 OpenMS TOPP
 # The subpackages will do the installing of the parts
 #make install
diff --git a/recipes/openms-meta/meta.yaml b/recipes/openms-meta/meta.yaml
index 85c954990533e..cbc167c08c8cc 100644
--- a/recipes/openms-meta/meta.yaml
+++ b/recipes/openms-meta/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "OpenMS" %}
-{% set version = "3.0.0" %}
+{% set version = "3.1.0" %} # if ends with 'dev' it is considered a development release and pulled from GitHub
 package:
   name: {{ name|lower  }}-meta
   version: {{ version  }}
@@ -11,12 +11,13 @@ source:
   git_depth: 1 # (Defaults to -1/not shallow)
 {% else %}
 source:
-  url: https://abibuilder.cs.uni-tuebingen.de/archive/openms/OpenMSInstaller/release/{{ version }}/OpenMS-{{ version }}-src.tar.gz
-  md5: 2b7ee0f4d8f42eb3c17384347df2dba4  
+  url: https://github.com/OpenMS/OpenMS/releases/download/Release{{ version }}/OpenMS-{{ version }}-src.tar.gz
+  md5: 6a60ef1a95c7ce915cc3a02e5bccd593
 {% endif %}
 
 build:
-  number: 0
+  number: 4
+  skip: True  # [osx]
 
 # Try this when building with GUI
 #extra:
@@ -142,15 +143,14 @@ outputs:
     requirements:
      run:
        - {{ pin_subpackage('openms', exact=True) }}
-       - comet-ms ==2023010
-       - fido ==1.0
+       - comet-ms ==2023012
        - luciphor2 ==2020_04_03
-       - msgf_plus ==2021.03.22
-       - pepnovo ==20101117
+       - msgf_plus ==2023.01.1202
        - percolator ==3.5
-       - sirius-csifingerid =4.9
-       - thermorawfileparser ==1.3.4
+       - sirius-ms ==5.8.2
+       - thermorawfileparser ==1.4.3
        - xtandem ==15.12.15.2
+       - sage-proteomics ==0.14.4
        - gnuplot
        - r-gplots
     test:
@@ -167,6 +167,7 @@ about:
 extra:
   skip-lints:
     - build_number_needs_reset  # our linter has some issues with multi-package recipes as it seems
+    - missing_run_exports # linter seems expect run_export keyword for meta-package in multi-package
     {% if 'dev' in version %}
     - uses_vcs_url
     - missing_hash
@@ -174,4 +175,4 @@ extra:
   identifiers:
     - biotools:openms
     - usegalaxy-eu:openms_fileconverter
-    - doi:10.1038/nmeth.3959
\ No newline at end of file
+    - doi:10.1038/nmeth.3959
diff --git a/recipes/opentargets-validator/meta.yaml b/recipes/opentargets-validator/meta.yaml
index 4c0c6c9c51919..dcdd0b20e5bb3 100644
--- a/recipes/opentargets-validator/meta.yaml
+++ b/recipes/opentargets-validator/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "opentargets-validator" %}
-{% set version = "0.8.0" %}
+{% set version = "1.0.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,35 +7,25 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: "728ef0e393028db1a7277ad9d5461868f311865ab49fcb5de18e49b9e0d12a6e"
+  sha256: "7908b649a82f7d45d2e1e4a32b35e4ae1ffbdd32cb3060e38d2155af45da717f"
 
 build:
   number: 0
   noarch: python
   entry_points:
     - opentargets_validator=opentargets_validator.cli:main
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vvv"
+  run_exports:
+    - {{ pin_subpackage("opentargets-validator", max_pin="x") }}
 
 requirements:
   host:
-    - future
-    - jsonschema=3.0.0a3
-    - opentargets-urlzsource
+    - python >=3.8
     - pip
-    - pypeln=0.1.6
-    - python=3.7
-    - requests
-    - rfc3987
-    - simplejson
   run:
-    - future
-    - jsonschema=3.0.0a3
-    - opentargets-urlzsource
-    - pypeln=0.1.6
-    - python=3.7
-    - requests
-    - rfc3987
-    - simplejson
+    - python >=3.8
+    - python-fastjsonschema >=2.18.0
+    - pathos >=0.3.1
 
 test:
   imports:
diff --git a/recipes/orfanage/meta.yaml b/recipes/orfanage/meta.yaml
index 6479aa517bd7f..93c67654bf938 100644
--- a/recipes/orfanage/meta.yaml
+++ b/recipes/orfanage/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "1.0.4" %}
-{% set sha = "4d18ccdb99d8c221ee36f7d0786440dce8a7837eb299d088952c42d806782ca9" %}
+{% set version = "1.1.0" %}
+{% set sha = "724e82dd5175fd2420582e39a69b8b7d61d1e49871960d2d6d3a325a383719b6" %}
 
 package:
   name: "orfanage"
@@ -11,6 +11,8 @@ source:
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage('orfanage', max_pin="x") }}
 
 requirements:
   build:
diff --git a/recipes/orientationpy/build.sh b/recipes/orientationpy/build.sh
new file mode 100644
index 0000000000000..9b117d644a325
--- /dev/null
+++ b/recipes/orientationpy/build.sh
@@ -0,0 +1,3 @@
+#!/usr/bin/env bash
+
+"${PYTHON}" -m pip install --no-deps --ignore-installed --no-cache-dir -vvv *.whl
diff --git a/recipes/orientationpy/meta.yaml b/recipes/orientationpy/meta.yaml
new file mode 100644
index 0000000000000..11b7b6ed31b4b
--- /dev/null
+++ b/recipes/orientationpy/meta.yaml
@@ -0,0 +1,44 @@
+{% set name = "orientationpy" %}
+{% set version = "0.2.0.4" %}
+
+package:
+  name: "{{ name }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://files.pythonhosted.org/packages/0a/f5/ab88217f2b8a14bf10959de073d0fb2ca631c6ca00a953184cefec66a003/orientationpy-{{ version }}-py3-none-any.whl"
+  sha256: 918654b71c28824c0b19f67d4a9fb20d45f72f41566dc51d63f835076f7cd744
+
+build:
+  number: 0
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.8
+    - pip
+  run: # see https://gitlab.com/epfl-center-for-imaging/orientationpy/-/blob/main/pyproject.toml?ref_type=heads#L32
+    - python >=3.8
+    - matplotlib-base >=3.1.3
+    - numpy
+    - scipy
+    - numba
+    - numba-progress
+
+test:
+  commands:
+    - python -c "import orientationpy"
+
+about:
+  home: "https://pypi.org/project/orientationpy"
+  license: GNU General Public License v3 (GPL-3.0)
+  license_family: GPL
+  summary: "OrientationPy is the pythonic successor to the well-loved OrientationJ Fiji Plugin. It is a library that takes in 2D images or 3D volumes and computes the orientation of the greylevels."
+  dev_url: "https://gitlab.com/epfl-center-for-imaging/orientationpy"
+  doc_url: "https://epfl-center-for-imaging.gitlab.io/orientationpy/introduction.html"
+
+extra:
+  recipe-maintainers:
+    - kostrykin
diff --git a/recipes/orsum/meta.yaml b/recipes/orsum/meta.yaml
index 3591a34be072a..914af7c1fb195 100644
--- a/recipes/orsum/meta.yaml
+++ b/recipes/orsum/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "1.6.0" %}
-{% set sha256hash = "b44f9d5a68e4983da93c41cf5e4053c77ac550e0482601c1da6a83b039328da9" %}
+{% set version = "1.7.0" %}
+{% set sha256hash = "ba228a3d1ca6aa6269a624ab109c1a6c41c58dd392abcf46f8edc2e52760c1a8" %}
 package:
   name: orsum
   version: {{ version }}
@@ -11,6 +11,8 @@ source:
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('orsum', max_pin="x.x") }}
 
 requirements:
   run:
diff --git a/recipes/orthanq/build.sh b/recipes/orthanq/build.sh
new file mode 100644
index 0000000000000..9dca7213beca0
--- /dev/null
+++ b/recipes/orthanq/build.sh
@@ -0,0 +1,8 @@
+#!/bin/bash -eu
+
+# Make sure bindgen passes on our compiler flags.
+export BINDGEN_EXTRA_CLANG_ARGS="${CPPFLAGS} ${CFLAGS} ${LDFLAGS}"
+export HDF5_DIR=${PREFIX}
+export RUSTFLAGS="-C link-args=-Wl,-rpath,$HDF5_DIR/lib"
+
+cargo install --no-track --locked --verbose --root "${PREFIX}" --path .
diff --git a/recipes/orthanq/meta.yaml b/recipes/orthanq/meta.yaml
new file mode 100644
index 0000000000000..c9921a7e68c29
--- /dev/null
+++ b/recipes/orthanq/meta.yaml
@@ -0,0 +1,58 @@
+{% set version = "1.3.2" %}
+
+package:
+  name: orthanq
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("orthanq", max_pin="x") }}
+
+source:
+  url: https://github.com/orthanq/orthanq/archive/v{{ version }}.tar.gz
+  sha256: 56fa3b21370ce652ba0c516a4ee6b12ebaf8b9ce304c119563b449248606ef55
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - {{ compiler('rust') }}
+    - rust >=1.54
+    - pkg-config
+    - make
+    - cmake
+    - perl-findbin
+  host:
+    - gsl
+    - libcblas
+    - openssl
+    - zlib
+    - bzip2
+    - xz
+    - clangdev
+    - coincbc
+    - hdf5 =1.10.5
+    - fontconfig
+  run:
+    - gsl
+    - libcblas
+    - openssl
+    - zlib
+    - bzip2
+    - xz
+    - clangdev
+    - coincbc
+    - hdf5 =1.10.5
+    - fontconfig
+
+test:
+  commands:
+    - orthanq -h
+
+about:
+  home: https://github.com/orthanq/orthanq
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: Uncertainty aware HLA typing and general haplotype quantification
diff --git a/recipes/orthofinder/meta.yaml b/recipes/orthofinder/meta.yaml
index f3613f21558b7..d55ffefa16324 100644
--- a/recipes/orthofinder/meta.yaml
+++ b/recipes/orthofinder/meta.yaml
@@ -7,7 +7,9 @@ package:
 
 build:
   noarch: generic
-  number: 1
+  number: 2
+  run_exports:
+    - {{ pin_subpackage('orthofinder', max_pin="x") }}
 
 source:
   url: https://github.com/davidemms/OrthoFinder/releases/download/{{ version }}/OrthoFinder_source.tar.gz
@@ -24,7 +26,7 @@ requirements:
     - fastme
     - mafft
     - fasttree
-    - muscle
+    - muscle <5
     - raxml
     - raxml-ng
     - iqtree
diff --git a/recipes/orthofisher/meta.yaml b/recipes/orthofisher/meta.yaml
new file mode 100644
index 0000000000000..5c44d64e8a351
--- /dev/null
+++ b/recipes/orthofisher/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "orthofisher" %}
+{% set version = "1.1.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/orthofisher-{{ version }}.tar.gz
+  sha256: e8600178d630f1978cf8c6657a6ff128c309dc6bc3bb6f6549ffc04ed4e02e29
+
+build:
+  number: 0
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  entry_points:
+    - orthofisher = orthofisher.orthofisher:main
+  run_exports:
+    - {{ pin_subpackage('orthofisher', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.9
+    - pip
+  run:
+    - python >=3.9
+    - biopython >=1.81
+    - numpy >=1.24.0
+    - tqdm >=4.66.1
+
+test:
+  imports:
+    - orthofisher
+  commands:
+    - orthofisher --help
+
+about:
+  home: https://github.com/JLSteenwyk/orthofisher.git
+  summary: Orthofisher is a broadly applicable tool for automated gene identification and retrieval.
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE.md
+  doc_url: https://jlsteenwyk.com/orthofisher/
+
+extra:
+  identifiers:
+    - doi:10.1093/g3journal/jkab250
diff --git a/recipes/orthoflow/meta.yaml b/recipes/orthoflow/meta.yaml
new file mode 100644
index 0000000000000..be8b066f348c6
--- /dev/null
+++ b/recipes/orthoflow/meta.yaml
@@ -0,0 +1,67 @@
+{% set name = "orthoflow" %}
+{% set version = "0.3.4" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/orthoflow-{{ version }}.tar.gz
+  sha256: 063bff7c0f5e4a62e637f472ce27b95a6ccd8709fcf381b8b735bfd7df3a55e6
+
+build:
+  entry_points:
+    - orthoflow = orthoflow.main:app
+  noarch: python
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.8,<3.12
+    - poetry-core >=1.0.0
+    - pip
+  run:
+    - python >=3.8,<3.12
+    - snakemake-minimal >=7.0.0
+    - pandas >=1.2.5,<2.0.0
+    - typer >=0.4.1
+    - flask >=2.1.2
+    - biopython >=1.79.0
+    - jinja2 >=3.1.2
+    - pydot >=1.4.2
+    - appdirs >=1.4.4
+    - joblib >=1.2.0
+    - toml >=0.10.2
+    - phytest >=1.4.1
+    - rich >=13.3.3
+    - pulp 2.7.0
+
+test:
+  imports:
+    - orthoflow
+  commands:
+    - orthoflow --help
+
+about:
+  home: https://github.com/rbturnbull/orthoflow
+  summary: Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.
+  license: Apache-2.0
+  license_family: APACHE
+  license_file: LICENSE
+  dev_url: https://github.com/rbturnbull/orthoflow
+  doc_url: https://rbturnbull.github.io/orthoflow/
+  description: |
+
+    # Orthoflow - end-to-end phylogenomic inference
+
+    Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.
+
+    For more information, visit the GitHub or the documentation page.
+
+extra:
+  recipe-maintainers:
+    - rbturnull
+    - vinisalazar
diff --git a/recipes/ostir/meta.yaml b/recipes/ostir/meta.yaml
index d826cf029e5fa..14914da27c56f 100644
--- a/recipes/ostir/meta.yaml
+++ b/recipes/ostir/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "OSTIR" %}
-{% set version = "1.1.0" %}
+{% set version = "1.1.2" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,21 +7,23 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 05df18370a371ea1fa5260d1eeeebf015368363b4174ee1005b3047c697489b4
+  sha256: 9ca8941245ed0265e87e68c4b09adc599324d8f9e10e19e377262680288c7771
 
 build:
   number: 0
   entry_points:
     - ostir = ostir.ostir:main
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('ostir', max_pin="x.x.x") }}
 
 requirements:
   host:
     - pip
-    - python >=3.7
+    - python >=3.8
   run:
-    - python >=3.7
+    - python >=3.8
     - viennarna >=2.4.18
     - numpy >=1.20.1
 
@@ -34,10 +36,12 @@ test:
 
 about:
   home: "https://github.com/barricklab/ostir"
-  license: "GNU General Public v3 or later (GPLv3+)"
+  license: "GPL-3.0-or-later"
   license_family: GPL3
   license_file: "LICENSE"
   summary: "Open Source Transcription Initiation Rates"
+  doc_url: "https://github.com/barricklab/ostir/wiki"
+  dev_url: "https://github.com/barricklab/ostir"
 
 extra:
   recipe-maintainers:
diff --git a/recipes/pairix/build.sh b/recipes/pairix/build.sh
index d91603e1fb483..478e63e9afca8 100644
--- a/recipes/pairix/build.sh
+++ b/recipes/pairix/build.sh
@@ -1,20 +1,27 @@
 #!/bin/bash
 
+mkdir -p "${PREFIX}/bin"
+
 # Install both the pairix binaries and the Python extension module
-export C_INCLUDE_PATH=${PREFIX}/include
-export LIBRARY_PATH=${PREFIX}/lib
-make
-cp bin/pairix $PREFIX/bin/pairix
-cp bin/pairs_merger $PREFIX/bin/pairs_merger
-cp bin/streamer_1d $PREFIX/bin/streamer_1d
-cp util/column_remover.pl $PREFIX/bin/column_remover.pl
-cp util/duplicate_header_remover.pl $PREFIX/bin/duplicate_header_remover.pl
-cp util/fragment_4dnpairs.pl $PREFIX/bin/fragment_4dnpairs.pl
-cp util/juicer_shortform2pairs.pl $PREFIX/bin/juicer_shortform2pairs.pl
-cp util/merge-pairs.sh $PREFIX/bin/merge-pairs.sh
-cp util/merged_nodup2pairs.pl $PREFIX/bin/merged_nodup2pairs.pl
-cp util/old_merged_nodup2pairs.pl $PREFIX/bin/old_merged_nodup2pairs.pl
-cp util/process_merged_nodup.sh $PREFIX/bin/process_merged_nodup.sh
-cp util/process_old_merged_nodup.sh $PREFIX/bin/process_old_merged_nodup.sh
-cp util/bam2pairs/bam2pairs $PREFIX/bin/bam2pairs
-$PYTHON setup.py install --single-version-externally-managed --record=record.txt
+export C_INCLUDE_PATH="${PREFIX}/include"
+export LIBRARY_PATH="${PREFIX}/lib"
+
+make CC="${CC}"
+
+cp ${SRC_DIR}/util/*.pl ${PREFIX}/bin/
+cp ${SRC_DIR}/util/*.sh ${PREFIX}/bin/
+cp ${SRC_DIR}/util/bam2pairs/bam2pairs ${PREFIX}/bin/
+
+# Fix perl shebang
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' $PREFIX/bin/column_remover.pl
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' $PREFIX/bin/duplicate_header_remover.pl
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' $PREFIX/bin/fragment_4dnpairs.pl
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' $PREFIX/bin/juicer_shortform2pairs.pl
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' $PREFIX/bin/merged_nodup2pairs.pl
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' $PREFIX/bin/old_merged_nodup2pairs.pl
+
+cp ${SRC_DIR}/bin/pairix ${PREFIX}/bin/
+cp ${SRC_DIR}/bin/pairs_merger ${PREFIX}/bin/
+cp ${SRC_DIR}/bin/streamer_1d ${PREFIX}/bin/
+
+${PYTHON} -m pip install . -vvv --no-deps --no-build-isolation --no-cache-dir
diff --git a/recipes/pairix/build_failure.osx-64.yaml b/recipes/pairix/build_failure.osx-64.yaml
deleted file mode 100644
index 919f523e493c3..0000000000000
--- a/recipes/pairix/build_failure.osx-64.yaml
+++ /dev/null
@@ -1,104 +0,0 @@
-recipe_sha: 171fe0735fef1a9e10a803aefb6b400f711ced35e2783b546dd36d6aeae21f7f  # The commit at which this recipe failed to build.
-skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
-log: |2-
-          int dim = ti_get_sc2(idx)1==0?1:2;
-                               ^~~
-  ./pairix.h:209:36: note: passing argument to parameter 'idx' here
-          int ti_get_sc2(ti_index_t *idx);
-                                     ^
-  index.c:1219:17: warning: initializing 'char **' with an expression of type 'const char **' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers]
-           char **chrpairlist = ti_seqname(t->idx, &n_seqpair_list);
-                  ^             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  index.c:1236:59: warning: passing 'char **' to parameter of type 'const char **' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers]
-           sequential_iter_t *siter = ti_querys_2d_multi(t, regions, n_sub_list);
-                                                            ^~~~~~~
-  ./pairix.h:131:73: note: passing argument to parameter 'regs' here
-          sequential_iter_t *ti_querys_2d_multi(pairix_t *t, const char **regs, int nRegs);
-                                                                          ^
-  index.c:1242:23: warning: initializing 'char *' with an expression of type 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
-           *sp=0; char *chr1 = reg;
-                        ^      ~~~
-  index.c:1246:17: warning: initializing 'char **' with an expression of type 'const char **' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers]
-           char **chrpairlist = ti_seqname(t->idx, &n_seqpair_list);
-                  ^             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  index.c:1263:59: warning: passing 'char **' to parameter of type 'const char **' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers]
-           sequential_iter_t *siter = ti_querys_2d_multi(t, regions, n_sub_list);
-                                                            ^~~~~~~
-  ./pairix.h:131:73: note: passing argument to parameter 'regs' here
-          sequential_iter_t *ti_querys_2d_multi(pairix_t *t, const char **regs, int nRegs);
-                                                                          ^
-  index.c:1417:24: error: incompatible pointer to integer conversion returning 'ti_iter_t' (aka 'struct __ti_iter_t *') from a function with result type 'int' [-Wint-conversion]
-          if (name == 0) return ti_iter_first();
-                                ^~~~~~~~~~~~~~~
-  index.c:1469:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
-       if( miter->iu = calloc(n,sizeof(iter_unit*))) {
-           ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  index.c:1469:20: note: place parentheses around the assignment to silence this warning
-       if( miter->iu = calloc(n,sizeof(iter_unit*))) {
-                     ^
-           (                                       )
-  index.c:1469:20: note: use '==' to turn this assignment into an equality comparison
-       if( miter->iu = calloc(n,sizeof(iter_unit*))) {
-                     ^
-                     ==
-  index.c:1537:19: warning: assigning to 'char *' from 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
-          miu[i]->s = ti_iter_read(miu[i]->t->fp, miu[i]->iter, miu[i]->len, seqonly);
-                    ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  index.c:1543:17: warning: assigning to 'char *' from 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
-        miu[0]->s = ti_iter_read(miu[0]->t->fp, miu[0]->iter, miu[0]->len, seqonly); // get next entry for the flushed iter
-                  ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  index.c:1573:11: warning: initializing 'char *' with an expression of type 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
-      char *s = ti_iter_read(siter->t->fp,siter->iter[siter->curr], len, 0);
-            ^   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  index.c:1576:9: warning: assigning to 'char *' from 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
-        s = ti_iter_read(siter->t->fp,siter->iter[siter->curr], len, 0);
-          ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  index.c:1643:22: warning: assigning to 'char **' from 'const char **' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers]
-              seqnames = ti_seqname(tbs[i]->idx,&len);
-                       ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  index.c:1911:34: warning: passing 'const char *' to parameter of type 'char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
-          char *reg2 = flip_region(reg, get_region_split_character(tb));
-                                   ^~~
-  index.c:1743:27: note: passing argument to parameter 's' here
-  char *flip_region ( char* s, char region_split_character) {
-                            ^
-  index.c:1971:12: warning: initializing 'char **' with an expression of type 'const char **' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers]
-      char **seqnames = ti_seqname(idx,&len);
-             ^          ~~~~~~~~~~~~~~~~~~~~
-  index.c:1977:64: warning: passing 'const char *' to parameter of type 'void *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
-            if(ti_get_tid(idx, reg2)!=-1) { free(seqnames); free(reg2); return(0); }  // not a triangle
-                                                                 ^~~~
-  /Applications/Xcode_14.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk/usr/include/stdlib.h:143:18: note: passing argument to parameter here
-  void     free(void *);
-                      ^
-  index.c:1978:14: warning: passing 'const char *' to parameter of type 'void *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
-          free(reg2);
-               ^~~~
-  /Applications/Xcode_14.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk/usr/include/stdlib.h:143:18: note: passing argument to parameter here
-  void     free(void *);
-                      ^
-  18 warnings and 1 error generated.
-  make[2]: *** [Makefile:15: index.o] Error 1
-  make[2]: Leaving directory '$SRC_DIR/src'
-  make[1]: *** [Makefile:18: all-recur] Error 1
-  make[1]: Leaving directory '$SRC_DIR/src'
-  cp: bin/pairix: No such file or directory
-  Traceback (most recent call last):
-    File "/opt/mambaforge/envs/bioconda/bin/conda-mambabuild", line 10, in <module>
-      sys.exit(main())
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
-      call_conda_build(action, config)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
-      result = api.build(
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
-      return build_tree(
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
-      packages_from_this = build(metadata, stats,
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
-      utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
-      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
-      raise subprocess.CalledProcessError(proc.returncode, _args)
-  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/mambaforge/envs/bioconda/conda-bld/pairix_1685394139065/work/conda_build.sh']' returned non-zero exit status 1.
-# Last 100 lines of the build log.
diff --git a/recipes/pairix/conda_build_config.yaml b/recipes/pairix/conda_build_config.yaml
new file mode 100644
index 0000000000000..1a582a0844fac
--- /dev/null
+++ b/recipes/pairix/conda_build_config.yaml
@@ -0,0 +1,3 @@
+# current version does not build with newer compilers
+c_compiler_version:
+  - 14  # [osx]
diff --git a/recipes/pairix/meta.yaml b/recipes/pairix/meta.yaml
index f2d810a4b6cf3..5a39beae8b866 100644
--- a/recipes/pairix/meta.yaml
+++ b/recipes/pairix/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.3.7" %}
+{% set version = "0.3.8" %}
 
 package:
   name: pairix
@@ -6,12 +6,14 @@ package:
 
 source:
   url: https://github.com/4dn-dcic/pairix/archive/{{ version }}.tar.gz
-  md5: a1f9b3c7b13d904dfe736cf5e66c2385
+  sha256: 51e349c034eda3bce21d9f89a8e477471d2db5a3ef4424a39999d1ec316e2726
   patches:
     - src_Makefile.patch
 
 build:
-  number: 5
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('pairix', max_pin="x.x") }}
 
 requirements:
   build:
@@ -19,21 +21,28 @@ requirements:
     - {{ compiler('c') }}
   host:
     - python
-    - setuptools
+    - pip
     - zlib
   run:
-    - htslib
     - python
+    - perl
+    - htslib
+    - samtools
 
 test:
-  imports:
-    - pypairix
+  #imports:
+    #- pypairix
   commands:
     - pairix --help
 
 about:
   home: https://github.com/4dn-dcic/pairix
   license: MIT
+  license_family: MIT
   license_file: "LICENSE.txt"
   summary: 2D indexing on bgzipped text files of paired genomic coordinates
-  license_family: MIT
+  dev_url: https://github.com/4dn-dcic/pairix
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/pairtools/meta.yaml b/recipes/pairtools/meta.yaml
index 71df1535aacad..62746b7ac48ad 100644
--- a/recipes/pairtools/meta.yaml
+++ b/recipes/pairtools/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pairtools" %}
-{% set version = "1.0.2" %}
+{% set version = "1.1.0" %}
 
 package:
   name: {{ name|lower }}
@@ -7,13 +7,15 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: af031b369b9d99ecd6388b2c116425a9d5c6fdb98146d44d5d013c92b3704917
+  sha256: 3f265ebcd50fb07a36199a99c58f6b17810b48bacf2d5f3096453319c89bd522
 
 build:
-  number: 1
+  number: 0
   skip: True  # [osx or py<37]
   entry_points:
     - pairtools = pairtools.cli:cli
+  run_exports:
+    - {{ pin_subpackage('pairtools', max_pin="x") }}
 
 requirements:
   build:
@@ -21,7 +23,7 @@ requirements:
     - {{ compiler('cxx') }}
   host:
     - python
-    - setuptools
+    - pip
     - cython
     - numpy
     - pysam >=0.19
@@ -44,7 +46,6 @@ requirements:
 test:
   imports:
     - pairtools
-
   commands:
     # click requires a unicode locale
     - pairtools --help
diff --git a/recipes/paml/meta.yaml b/recipes/paml/meta.yaml
index 33a39a03b3389..e2eeb810e8291 100644
--- a/recipes/paml/meta.yaml
+++ b/recipes/paml/meta.yaml
@@ -1,17 +1,19 @@
 {% set name = "PAML" %}
-{% set version = "4.10.6" %}
-{% set sha256 = "d6437f04ee233209e1ded83addbfe65d1363185877a03ba7924ce81f9ebc7777" %}
+{% set version = "4.10.7" %}
+{% set sha256 = "0f29e768b3797b69eadc6332c3d046d8727702052d56c3b729883626c0a5a4e3" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://github.com/abacus-gene/paml/archive/v{{ version }}.tar.gz
+  url: https://github.com/abacus-gene/paml/archive/{{ version }}.tar.gz
   sha256: {{ sha256 }}
 
 build:
-  number: 2
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('paml', max_pin="x.x") }}
 
 requirements:
   build:
@@ -35,6 +37,8 @@ about:
   license_file: LICENSE
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:paml
     - doi:10.1093/bioinformatics/13.5.555
diff --git a/recipes/panacus/meta.yaml b/recipes/panacus/meta.yaml
index b4cd1f7f32252..d5ada5ff55534 100644
--- a/recipes/panacus/meta.yaml
+++ b/recipes/panacus/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "panacus" %}
-{% set version = "0.2.1" %}
+{% set version = "0.2.3" %}
 
 package:
   name: {{ name|lower }}
@@ -7,10 +7,12 @@ package:
 
 source:
   url: https://github.com/marschall-lab/{{ name }}/archive/refs/tags/{{ version }}.tar.gz
-  sha256: 3f8cc6228d338484c25ababd40514ec25b316a8c85dc31543bd80f95c1738edb
+  sha256: 969eaed515a9679f5a74632986240f7afd0558b2a2914281dc783ac1fa1b6f9e
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   build:
diff --git a/recipes/panaroo/meta.yaml b/recipes/panaroo/meta.yaml
index e1a035f87701c..1a459568ac0be 100644
--- a/recipes/panaroo/meta.yaml
+++ b/recipes/panaroo/meta.yaml
@@ -1,15 +1,18 @@
-{% set version = "1.3.3" %} # put in correct version here
+{% set version = "1.5.0" %} 
 {% set name = "panaroo" %}
+
 package:
   name: {{ name|lower }}
   version: {{ version }}
+
 source:
   url: https://github.com/gtonkinhill/{{ name|lower }}/archive/v{{ version }}.tar.gz
-  sha256: 0adf60fa29dcbe91350de7dafb31edfdad23ed1ee146f604dd2feecf73e786da
+  sha256: 0a80f87cde8ee3d59cd62cdae434341979a03dfdeb07142c2f9ff3b54dc0477a
+
 build:
   number: 0
   noarch: python
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
   entry_points:
     - panaroo = panaroo.__main__:main
     - run_prokka = panaroo.run_prokka:main
@@ -22,15 +25,18 @@ build:
     - panaroo-msa = panaroo.post_run_alignment_gen:main
     - panaroo-integrate = panaroo.integrate:main
     - panaroo-gene-neighbourhood = panaroo.get_neighborhood:main
+  run_exports:
+    - {{ pin_subpackage('panaroo', max_pin="x") }}
+
 requirements:
   host:
-    - python >=3
+    - python >=3.6
     - pip
   run:
-    - python >=3
+    - python >=3.6
     - networkx
     - numba
-    - numpy 
+    - numpy
     - mkl
     - scipy
     - scikit-learn
@@ -49,10 +55,6 @@ requirements:
     - mash
     - prokka
     - cd-hit
-    # Work around cd-hit not always allowing multiple threads
-    - zlib
-    - openmp 
-    - llvm-openmp  # [osx]
 
 test:
   imports:
@@ -66,8 +68,11 @@ test:
     - panaroo-img --help
     - panaroo-fmg --help
     - panaroo-msa --help
+
 about:
   home: https://gtonkinhill.github.io/panaroo
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary: 'panaroo - an updated pipeline for pangenome investigation'
+  doc_url: https://gtonkinhill.github.io/panaroo/#/gettingstarted/quickstart
diff --git a/recipes/pandora/meta.yaml b/recipes/pandora/meta.yaml
index 462abc256d677..32af134587696 100644
--- a/recipes/pandora/meta.yaml
+++ b/recipes/pandora/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pandora" %}
-{% set version = "0.9.1" %}
+{% set version = "0.9.2" %}
 {% set repo_URL = "https://github.com/rmcolq/pandora" %}
 
 package:
@@ -8,11 +8,13 @@ package:
 
 source:
   url: {{ repo_URL }}/releases/download/{{ version }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 1dbde37526f1d2d0b36b51c5366a6ef96a975a45127dd265aec5d61ccf00caa8
-  
+  sha256: 0e6189990dcf51eb28d175e0be76154a3ede1b602e5197f1a86ce8ba2839ba4e
+
 build:
-  number: 2
+  number: 0
   skip: True #  [osx]
+  run_exports:
+    - {{ pin_subpackage('pandora', max_pin="x") }}
 
 requirements:
   build:
@@ -34,6 +36,7 @@ test:
 about:
   home: {{ repo_URL }}
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary: Pan-genome inference and genotyping with long noisy or short accurate reads
 
diff --git a/recipes/panfeed/meta.yaml b/recipes/panfeed/meta.yaml
index 6d1fef35edd4a..3667f7f41b1db 100644
--- a/recipes/panfeed/meta.yaml
+++ b/recipes/panfeed/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.5.1" %}
+{% set version = "1.6.0" %}
 {% set name = "panfeed" %}
 
 package:
@@ -7,7 +7,7 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: b5371a549d315c8f12339e6eeeb72cb0449d84b6a119959b05f689c3847fb203
+  sha256: 3a9b94025dc67e59e9302519234ca7b346c04d80c01db5d3963999eec33eadf3
 
 build:
   entry_points:
@@ -16,8 +16,10 @@ build:
     - panfeed-get-kmers = panfeed.get_kmers:main
     - panfeed-plot = panfeed.plot:main
   noarch: python
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
   number: 0
+  run_exports:
+    - {{ pin_subpackage('panfeed', max_pin="x") }}
 
 requirements:
   host:
@@ -30,7 +32,7 @@ requirements:
     - pandas
     - pyfaidx
     - matplotlib-base
-    - seaborn
+    - seaborn-base
 
 test:
   imports:
@@ -45,7 +47,9 @@ about:
   home: https://github.com/microbial-pangenomes-lab/panfeed
   summary: 'Compute gene-cluster specific k-mers over a pangenome'
   license: Apache-2.0
+  license_family: APACHE
   license_file: LICENSE
+  dev_url: https://github.com/microbial-pangenomes-lab/panfeed
 
 extra:
   recipe-maintainers:
diff --git a/recipes/pango-designation/meta.yaml b/recipes/pango-designation/meta.yaml
index 6adba4024b666..5be34f04fd20a 100644
--- a/recipes/pango-designation/meta.yaml
+++ b/recipes/pango-designation/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.21" %}
+{% set version = "1.27" %}
 
 package:
   name: pango-designation
@@ -6,12 +6,16 @@ package:
 
 source:
   url: https://github.com/cov-lineages/pango-designation/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: c0bb6cd3a01ff11d0929e8001a355bc54383bb1109d5be68585d8b5d2bca11b6
+  sha256: da3e697eabb73fc835490b737a8c88558a8b92fc81601f9363baef50c70b350e
 
 build:
   number: 0
   noarch: python
-  script: {{ PYTHON }} -m pip install --no-deps --ignore-installed -vv .
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation -vvv .
+  entry_points:
+    - pango_designation = pango_designation.command:main
+  run_exports:
+    - {{ pin_subpackage('pango-designation', max_pin="x") }}
 
 requirements:
   host:
@@ -29,7 +33,7 @@ about:
   license: CC-BY-NC-4.0
   license_file: LICENSE.md
   summary: Repository for suggesting new lineages that should be added to the current
-  
+
 extra:
   recipe-maintainers:
     - corneliusroemer
diff --git a/recipes/pangolin-data/meta.yaml b/recipes/pangolin-data/meta.yaml
index c0b44e8e12c3d..d2ecff1eadff7 100644
--- a/recipes/pangolin-data/meta.yaml
+++ b/recipes/pangolin-data/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.21" %}
+{% set version = "1.27" %}
 
 package:
   name: pangolin-data
@@ -6,12 +6,16 @@ package:
 
 source:
   url: https://github.com/cov-lineages/pangolin-data/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 385f8bb6f3c0263a453b825a50467ed0cbd6bad5aec2c4c33a95fdd52ecc7928
+  sha256: 6738e00e83c3267b32903796f5453ad837980b03c621c4ef7003610ac12a528b
 
 build:
   number: 0
   noarch: python
-  script: python -m pip install --no-deps --ignore-installed .
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation . -vvv
+  entry_points:
+    - pangolin_data = pangolin_data.command:main
+  run_exports:
+    - {{ pin_subpackage("pangolin-data", max_pin="x.x") }}
 
 requirements:
   host:
@@ -27,5 +31,6 @@ test:
 about:
   home: https://github.com/cov-lineages/pangolin-data
   license: GPL-3.0-only
+  license_family: GPL3
   license_file: LICENSE
   summary: Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments
diff --git a/recipes/pangu/meta.yaml b/recipes/pangu/meta.yaml
index cabad42e5e79a..e20eb3c1897c3 100644
--- a/recipes/pangu/meta.yaml
+++ b/recipes/pangu/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.2.2" %}
-{% set sha256 = "91133019717eb8becc6f9345257891206bea57c5b3706b18440cfe3c393fd07c" %}
+{% set version = "0.2.8" %}
+{% set sha256 = "4360539dc2a881c3557d43e4c4322326385a7efa929b18f223aabf2e136fdea9" %}
 
 package:
   name: pangu
@@ -14,7 +14,9 @@ build:
   noarch: python
   entry_points:
     - pangu = pangu.__main__:main_cli
-  script: python -m pip install --no-deps -vv .
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation -vvv .
+  run_exports:
+    - {{ pin_subpackage('pangu', max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/panisa/meta.yaml b/recipes/panisa/meta.yaml
index c65fdd7f37bab..511cc0e6a3ca8 100644
--- a/recipes/panisa/meta.yaml
+++ b/recipes/panisa/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "panISa" %}
-{% set version = "0.1.6" %}
+{% set version = "0.1.7" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,22 +7,22 @@ package:
 
 source:
   url: "https://github.com/bvalot/panISa/archive/refs/tags/{{ version }}.tar.gz"
-  sha256: 6bb76139cd6e263073f3194ea21712c406e327c273e327c0bb270dcd556cada3
+  sha256: 5c9b6c4c30ebe4e43439e2a85ae304b9ed434239165749395232ba06fdbbc44c
 
 build:
   number: 0
   noarch: python
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('panisa', max_pin="x.x") }}
 
 requirements:
   host:
     - pip
-    - pysam >=0.9
-    - python
-    - requests >=2.12
+    - python >=3.7
   run:
     - pysam >=0.9
-    - python
+    - python >=3.7
     - requests >=2.12
 
 test:
@@ -34,9 +34,11 @@ test:
 
 about:
   home: "https://github.com/bvalot/panISa"
-  license: "GNU General Public v3 (GPLv3)"
+  license: "GPL-3.0-or-later"
   license_family: GPL3
+  license_file: LICENSE
   summary: "panISa is a software to search insertion sequence (IS) on resequencing data (bam file)"
+  dev_url: "https://github.com/bvalot/panISa"
 
 extra:
   recipe-maintainers:
diff --git a/recipes/panoptes-ui/meta.yaml b/recipes/panoptes-ui/meta.yaml
index 25094f3cc523d..220ff848b17c8 100644
--- a/recipes/panoptes-ui/meta.yaml
+++ b/recipes/panoptes-ui/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "panoptes-ui" %}
-{% set version = "0.2.0" %}
+{% set version = "0.2.3" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 715924b8b9e0e08a7a01e62a5798d53237916e2f3199b668f2a10c6b2675a7e4
+  sha256: 5fa903711786d68fb014e0015d647dd56b80b844fa2d6520554487663e45635d
 
 build:
   noarch: python
diff --git a/recipes/pantools/meta.yaml b/recipes/pantools/meta.yaml
index ffc5c7f3b64c5..cb74b8616ead8 100644
--- a/recipes/pantools/meta.yaml
+++ b/recipes/pantools/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "PanTools" %}
-{% set version = "4.2.2" %}
-{% set sha256 = "e95cfe5add0d5bfde517fe86c9c69d93569ac072c6158c368098e5f2db197892" %}
+{% set version = "4.3.1" %}
+{% set sha256 = "e9472d7283b1f64e54318f06b8ac6de63cd9338b54ea5153a24e1a081ea930a2" %}
 
 package:
   name: {{ name|lower }}
@@ -13,9 +13,11 @@ source:
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage("pantools", max_pin="x") }}
 
 requirements:
-  build:
+  host:
     - openjdk =8
     - maven
     - jq
@@ -23,21 +25,24 @@ requirements:
     - python >=3.7
     - openjdk =8
     - mcl
-    - kmc =3.0.1
+    - kmc >=3.1.0
     - mafft
     - iqtree
     - fasttree
     - blast
     - mash =2.3
     - fastani
-      #- busco =5  #causes conflicts on macOS
+    - busco =5
     - r-base >=3.5.0
     - r-ggplot2
     - r-ape
     - graphviz
     - aster =1.3
-      #- bcftools >=1.12  #causes conflicts on macOS
+    - bcftools >=1.12
     - tabix
+    - pal2nal >=14.1
+    - paml >=4.10.6
+    - r-cowplot >=1.1.1
 
 test:
   commands:
@@ -66,7 +71,6 @@ extra:
     If you want to overwrite it you can specify these values directly after your binaries.
     If you have _JAVA_OPTIONS set globally this will take precedence.
     For example run it with "pantools -Xms512m -Xmx1g".
-    NB: Both `BUSCO` and `bcftools` are dependencies of PanTools but they are not included in this recipe due to conflicts on MacOS.
   identifiers:
     - doi:https://doi.org/10.1093/bioinformatics/btw455
     - doi:https://doi.org/10.1186/s12859-018-2362-4
diff --git a/recipes/paragone/build.sh b/recipes/paragone/build.sh
new file mode 100644
index 0000000000000..0c97c7d01f619
--- /dev/null
+++ b/recipes/paragone/build.sh
@@ -0,0 +1,9 @@
+# Install paragone
+$PYTHON -m pip install --no-deps --ignore-installed .
+
+# Install HmmCleaner:
+${PREFIX}/bin/perl ${PREFIX}/bin/cpanm Bio::MUST::Core --notest
+${PREFIX}/bin/perl ${PREFIX}/bin/cpanm Bio::MUST::Drivers --notest
+${PREFIX}/bin/perl ${PREFIX}/bin/cpanm --force Bio::MUST::Apps::HmmCleaner --notest
+
+sed -i 's|#!/opt/miniconda3/miniconda3/bin/env perl|#!/usr/bin/env perl|' ${PREFIX}/bin/HmmCleaner.pl
diff --git a/recipes/paragone/meta.yaml b/recipes/paragone/meta.yaml
new file mode 100644
index 0000000000000..c35ccddcbb661
--- /dev/null
+++ b/recipes/paragone/meta.yaml
@@ -0,0 +1,55 @@
+{% set name = "paragone" %}
+{% set version = "1.0.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: "https://github.com/chrisjackson-pellicle/ParaGone/archive/refs/tags/v{{ version }}.tar.gz"
+  sha256: 3434714fed0239afdc8c5bd57cb6ee642563cf651fd668150a34f9f2c23981b2
+
+build:
+  number: 0
+  skip: True  # [win or osx]
+  run_exports:
+    - {{ pin_subpackage('paragone', max_pin="x") }}
+
+requirements:
+  build:
+    - {{ compiler('c') }} 
+    - setuptools
+  host:
+    - make
+    - perl >=5.32
+    - perl-app-cpanminus
+    - perl-moose >=2.2202
+    - perl-net-ssleay
+    - python <=3.9.16
+  run:
+    - biopython >=1.79 
+    - clustalo >=1.2.4
+    - ete3 >=3.1.2
+    - fasttree
+    - hmmer >=3.3.2
+    - iqtree >=2.2.0.3 
+    - mafft >=7.245
+    - openmp >=8.0.1
+    - perl >=5.32
+    - perl-moose >=2.2202
+    - r-base >=4.0.3
+    - treeshrink  
+    - trimal >=1.4.1
+
+test:
+  commands:
+    - paragone -v
+
+about:
+    home: "https://github.com/chrisjackson-pellicle/ParaGone"
+    license: GPL-3.0-or-later
+    license_family: GPL
+    license_file: LICENSE.txt
+    summary: >
+        Identify ortholog groups from a set of paralog sequences
+        from multiple taxa.
diff --git a/recipes/paraphase/meta.yaml b/recipes/paraphase/meta.yaml
index cb1be59e43301..1c59d226f457e 100644
--- a/recipes/paraphase/meta.yaml
+++ b/recipes/paraphase/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "2.2.3" %}
-{% set sha256 = "02f9117efbe9587faafc2fdf82bba8716c37c43429293dafe0542b7963e8cc54" %}
+{% set version = "3.1.1" %}
+{% set sha256 = "6f43404f35e158de787926811869eb5027e93e74e08c6c8a9db7993a50d89c3c" %}
 
 package:
   name: paraphase
@@ -15,6 +15,8 @@ build:
   entry_points:
     - paraphase = paraphase.__main__:main
   script: python -m pip install --no-deps -vv .
+  run_exports:
+    - {{ pin_subpackage("paraphase", max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/parasail-python/meta.yaml b/recipes/parasail-python/meta.yaml
index 9806e254863e3..1694669f24f95 100644
--- a/recipes/parasail-python/meta.yaml
+++ b/recipes/parasail-python/meta.yaml
@@ -13,9 +13,11 @@ source:
     - darwin-libtool-name.patch
 
 build:
-  number: 0
+  number: 1
   skip: True  # [py < 37]
-  script: {{ PYTHON }} -m pip install . --use-pep517 -vv
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv
+  run_exports:
+    - {{ pin_subpackage('parasail-python', max_pin="x") }}
 
 requirements:
   build:
@@ -29,7 +31,6 @@ requirements:
   host:
     - python
     - pip
-    - wheel
     - zlib
   run:
     - python
@@ -45,8 +46,10 @@ about:
   license: BSD-3-Clause
   license_family: BSD
   license_file: COPYING
-  dev_url: https://pypi.org/project/parasail/
+  dev_url: https://github.com/jeffdaily/parasail-python
 
 extra:
   identifiers:
     - doi:10.1186/s12859-016-0930-z
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/parascopy/build.sh b/recipes/parascopy/build.sh
index 81b104a3383e9..c00d709f82cd6 100644
--- a/recipes/parascopy/build.sh
+++ b/recipes/parascopy/build.sh
@@ -1,14 +1,11 @@
+#!/bin/bash
 
 rm -df freebayes
 git clone --recursive https://github.com/tprodanov/freebayes.git
 
 cd freebayes
-mkdir build
-meson build/ --buildtype release
-cd build
-ninja -v
-cp freebayes "${PREFIX}/bin/_parascopy_freebayes"
-cd ../../
-
-$PYTHON -m pip install . --ignore-install --no-deps -vv
+./compile.sh
+cp build/freebayes "${PREFIX}/bin/_parascopy_freebayes"
+cd ../
 
+$PYTHON -m pip install . --no-build-isolation --no-deps -vvv
diff --git a/recipes/parascopy/meta.yaml b/recipes/parascopy/meta.yaml
index 27b1bceee3b2a..27de332711dc3 100644
--- a/recipes/parascopy/meta.yaml
+++ b/recipes/parascopy/meta.yaml
@@ -1,17 +1,20 @@
 {% set name = "parascopy" %}
-{% set version = "1.11.0" %}
+{% set version = "1.15.1" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 build:
-  number: 2
-  skip: true # [osx or py2k]
+  number: 1
+  entry_points:
+    - parascopy=parascopy.entry_point:main
+  run_exports:
+    - {{ pin_subpackage('parascopy', max_pin="x") }}
 
 source:
   url: https://github.com/tprodanov/{{ name }}/archive/v{{ version }}.tar.gz
-  sha256: dfad46d7e3859ed4e951950983d1ee4e4a4acc7c5c0215f9828dd939e64ae07a
+  sha256: 36eb9f6956e4d58e6a70523f8f489436bac4eff93ba1b656d7e2a24eb333840b
 
 requirements:
   build:
@@ -24,10 +27,12 @@ requirements:
     - python
     - pip
     - bzip2
+    - zlib
     - htslib
     - tabixpp
   run:
     - python
+    - zlib
     - numpy >=1.15
     - scipy >=1.5
     - pysam >=0.17
@@ -38,6 +43,7 @@ requirements:
     - bwa >=0.7
     - intervaltree >=3.0
     - tabixpp
+    - construct
 
 test:
   commands:
@@ -57,5 +63,6 @@ test:
 about:
   home: https://github.com/tprodanov/parascopy
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary: Calling paralog-specific copy number and sequence variants in duplicated genes using short-read whole-genome sequencing.
diff --git a/recipes/parsnp/build.sh b/recipes/parsnp/build.sh
index f8fa0b7b71356..8c6ca7f6a253e 100644
--- a/recipes/parsnp/build.sh
+++ b/recipes/parsnp/build.sh
@@ -34,6 +34,7 @@ rm -R muscle/m4
 cp parsnp $PREFIX/bin 
 cp extend.py $PREFIX/bin
 cp logger.py $PREFIX/bin
+cp partition.py $PREFIX/bin
 cp src/parsnp_core $PREFIX/bin/bin
 cp template.ini $PREFIX/bin
 cp -R bin $PREFIX/bin 
diff --git a/recipes/parsnp/cpu_count.patch b/recipes/parsnp/cpu_count.patch
new file mode 100644
index 0000000000000..eac0bdea42d0f
--- /dev/null
+++ b/recipes/parsnp/cpu_count.patch
@@ -0,0 +1,52 @@
+diff --git a/parsnp b/parsnp
+index 85fd9c9..9501ab8 100755
+--- a/parsnp
++++ b/parsnp
+@@ -8,6 +8,7 @@
+ import os, sys, string, random, subprocess, time, operator, math, datetime, numpy #pysam
+ from collections import defaultdict
+ import shutil
++import multiprocessing
+ import shlex
+ from tempfile import TemporaryDirectory
+ import re
+@@ -1210,8 +1211,13 @@ SETTINGS:
+         (len(outputDir)+17)*"*"))
+ 
+     # If we requested more threads than available, give a warning.
+-    if len(os.sched_getaffinity(0)) < threads:
+-        logger.warning("You have asked to use more threads than you have available on your machine. This may lead to serious performance degredation with RAxML.")
++    try:
++        if len(os.sched_getaffinity(0)) < threads:
++            logger.warning("You have asked to use more threads than you have available on your machine. This may lead to serious performance degredation with RAxML.")
++    except AttributeError:
++        if multiprocessing.cpu_count() < threads:
++            logger.warning("You have asked to use more threads than you have available on your machine. This may lead to serious performance degredation with RAxML.")
++
+     logger.info("<<Parsnp started>>")
+ 
+     #1)read fasta files (contigs/scaffolds/finished/DBs/dirs)
+@@ -1614,19 +1620,16 @@ SETTINGS:
+     else:
+         import partition 
+ 
+-        full_query_list_path = f"{outputDir}/config/input-list.txt"
+-        with open(full_query_list_path, 'w') as input_list_handle:
+-            random_seeded.shuffle(finalfiles)
+-            for qf in finalfiles:
+-                input_list_handle.write(qf + "\n")
+-
+         if len(finalfiles) % args.partition_size == 1:
+             logger.warning("Incrementing partition size by 1 to avoid having a remainder partition of size 1")
+             args.partition_size += 1
+         partition_output_dir = f"{outputDir}/partition"
+         partition_list_dir = f"{partition_output_dir}/input-lists"
+         os.makedirs(partition_list_dir, exist_ok=True)
+-        run_command(f"split -l {args.partition_size} -a 5 --additional-suffix '.txt' {full_query_list_path} {partition_list_dir}/{partition.CHUNK_PREFIX}-")
++        for partition_idx in range(math.ceil(len(finalfiles) / args.partition_size)):
++            with open(f"{partition_list_dir}/{partition.CHUNK_PREFIX}-{partition_idx:010}.txt", 'w') as part_out:
++                for qf in finalfiles[partition_idx*args.partition_size : (partition_idx+1)*args.partition_size]:
++                    part_out.write(f"{qf}\n")
+ 
+         chunk_label_parser = re.compile(f'{partition.CHUNK_PREFIX}-(.*).txt')
+         chunk_labels = []
diff --git a/recipes/parsnp/meta.yaml b/recipes/parsnp/meta.yaml
index acc3bfddfea80..d99dc6f3bfb79 100644
--- a/recipes/parsnp/meta.yaml
+++ b/recipes/parsnp/meta.yaml
@@ -1,16 +1,17 @@
-{% set version = "1.7.4" %}
+{% set version = "2.0.5" %}
 
 package:
   name: parsnp
   version: '{{version}}'
 
 source:
-  url: "https://github.com/marbl/parsnp/archive/refs/tags/v{{version}}.tar.gz"  
-  sha256: c24a1b395b1ddb6ab2a1f1c41e7e575b45da2ffed99581225be05fdad761684f
+  url: "https://github.com/marbl/parsnp/archive/refs/tags/v{{version}}.tar.gz"
+  sha256: 1d23695d0d624fa17e02c43b1d730200e526c17a48615593f75ee8fc35402489
 
 build:
-  skip: True  # [osx]
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('parsnp', max_pin="x") }}
 
 requirements:
   build:
@@ -19,31 +20,29 @@ requirements:
     - autoconf
     - libtool
     - make
-    - llvm-openmp  # [osx]
-    - openmp # [linux]
   host:
     - zlib
     - llvm-openmp  # [osx]
-    - openmp # [linux]
+    - openmp  # [linux]
   run:
     - python >=3.7
     - llvm-openmp  # [osx]
-    - openmp # [linux]
-    - harvesttools
-    - fasttree
-    - phipack
+    - openmp  # [linux]
     - biopython
-    - numpy 
+    - numpy
     - zlib
     - phipack
     - raxml
     - fasttree
-    - fastani # [linux]
-    - mash 
+    - fastani 
+    - mash
     - harvesttools
-    - mafft
+    - pyspoa
+    - tqdm
 
 about:
   home: https://github.com/marbl/parsnp
   license: "custom; see https://raw.githubusercontent.com/marbl/parsnp/master/LICENSE"
   summary: Parsnp is a command-line-tool for efficient microbial core genome alignment and SNP detection.
+  doc_url: "https://harvest.readthedocs.io/en/latest/content/parsnp/tutorial.html"
+  dev_url: https://github.com/marbl/parsnp
diff --git a/recipes/parsnp/run_test.sh b/recipes/parsnp/run_test.sh
index d8e2ab432847e..cb5ae8bb2dba1 100644
--- a/recipes/parsnp/run_test.sh
+++ b/recipes/parsnp/run_test.sh
@@ -9,3 +9,4 @@ parsnp -r ! -d mers_virus/genomes/*.fna -o test2 --verbose
 parsnp -g mers_virus/ref/England1.gbk -d mers_virus/genomes/*.fna -p 2 -C 1000 -c -o test --verbose --use-fasttree
 parsnp -r ! -d mers_virus/genomes/*.fna -o test2 --verbose -p 2
 parsnp -r ! -d mers_virus/genomes/*.fna -o test3 --verbose -p 2 --extend-lcbs
+parsnp -r ! -d mers_virus/genomes/*.fna -o test4 --verbose -p 2 --min-partition-size 10
diff --git a/recipes/pasa/build.sh b/recipes/pasa/build.sh
index 726bc8573d514..788c19f7e9fdf 100644
--- a/recipes/pasa/build.sh
+++ b/recipes/pasa/build.sh
@@ -31,3 +31,5 @@ echo "export PASAHOME=${PASAHOME}" > ${PREFIX}/etc/conda/activate.d/${PKG_NAME}-
 
 mkdir -p ${PREFIX}/etc/conda/deactivate.d/
 echo "unset PASAHOME" > ${PREFIX}/etc/conda/deactivate.d/${PKG_NAME}-${PKG_VERSION}.sh
+
+make clean
diff --git a/recipes/pasa/meta.yaml b/recipes/pasa/meta.yaml
index 2de53fba67c7e..b86f75dd4dd78 100644
--- a/recipes/pasa/meta.yaml
+++ b/recipes/pasa/meta.yaml
@@ -7,7 +7,9 @@ package:
   version: {{ version }}
 
 build:
-  number: 0
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('pasa', max_pin="x") }}
 
 source:
   url: https://github.com/PASApipeline/PASApipeline/releases/download/pasa-v{{ version }}/PASApipeline.v{{ version }}.FULL.tar.gz
@@ -23,7 +25,7 @@ requirements:
     - cdbtools
     - slclust
     - transdecoder
-    - gmap >=2021.08.25
+    - gmap >=2023.10.10
     - lighttpd   # [linux]
     - samtools
     - perl
@@ -48,9 +50,11 @@ test:
 about:
   home: "https://github.com/PASApipeline/PASApipeline"
   license: BSD-3-Clause
+  license_family: BSD
   license_file: LICENSE
   summary: "PASA, acronym for Program to Assemble Spliced Alignments (and pronounced 'pass-uh'), is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consistent with the most recently available experimental sequence data. PASA also identifies and classifies all splicing variations supported by the transcript alignments."
   doc_url: "https://github.com/PASApipeline/PASApipeline/wiki"
+  dev_url: "https://github.com/PASApipeline/PASApipeline"
 
 extra:
   identifiers:
diff --git a/recipes/pass/LICENSE b/recipes/pass/LICENSE
new file mode 100644
index 0000000000000..8f286b96aa63f
--- /dev/null
+++ b/recipes/pass/LICENSE
@@ -0,0 +1,674 @@
+GNU GENERAL PUBLIC LICENSE
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+
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+or that patent license was granted, prior to 28 March 2007.
+
+  Nothing in this License shall be construed as excluding or limiting
+any implied license or other defenses to infringement that may
+otherwise be available to you under applicable patent law.
+
+  12. No Surrender of Others' Freedom.
+
+  If conditions are imposed on you (whether by court order, agreement or
+otherwise) that contradict the conditions of this License, they do not
+excuse you from the conditions of this License.  If you cannot convey a
+covered work so as to satisfy simultaneously your obligations under this
+License and any other pertinent obligations, then as a consequence you may
+not convey it at all.  For example, if you agree to terms that obligate you
+to collect a royalty for further conveying from those to whom you convey
+the Program, the only way you could satisfy both those terms and this
+License would be to refrain entirely from conveying the Program.
+
+  13. Use with the GNU Affero General Public License.
+
+  Notwithstanding any other provision of this License, you have
+permission to link or combine any covered work with a work licensed
+under version 3 of the GNU Affero General Public License into a single
+combined work, and to convey the resulting work.  The terms of this
+License will continue to apply to the part which is the covered work,
+but the special requirements of the GNU Affero General Public License,
+section 13, concerning interaction through a network will apply to the
+combination as such.
+
+  14. Revised Versions of this License.
+
+  The Free Software Foundation may publish revised and/or new versions of
+the GNU General Public License from time to time.  Such new versions will
+be similar in spirit to the present version, but may differ in detail to
+address new problems or concerns.
+
+  Each version is given a distinguishing version number.  If the
+Program specifies that a certain numbered version of the GNU General
+Public License "or any later version" applies to it, you have the
+option of following the terms and conditions either of that numbered
+version or of any later version published by the Free Software
+Foundation.  If the Program does not specify a version number of the
+GNU General Public License, you may choose any version ever published
+by the Free Software Foundation.
+
+  If the Program specifies that a proxy can decide which future
+versions of the GNU General Public License can be used, that proxy's
+public statement of acceptance of a version permanently authorizes you
+to choose that version for the Program.
+
+  Later license versions may give you additional or different
+permissions.  However, no additional obligations are imposed on any
+author or copyright holder as a result of your choosing to follow a
+later version.
+
+  15. Disclaimer of Warranty.
+
+  THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
+APPLICABLE LAW.  EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
+HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY
+OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO,
+THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
+PURPOSE.  THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM
+IS WITH YOU.  SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF
+ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
+
+  16. Limitation of Liability.
+
+  IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
+WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
+THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY
+GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE
+USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF
+DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
+PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
+EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
+SUCH DAMAGES.
+
+  17. Interpretation of Sections 15 and 16.
+
+  If the disclaimer of warranty and limitation of liability provided
+above cannot be given local legal effect according to their terms,
+reviewing courts shall apply local law that most closely approximates
+an absolute waiver of all civil liability in connection with the
+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
+                     END OF TERMS AND CONDITIONS
+
+            How to Apply These Terms to Your New Programs
+
+  If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
+  To do so, attach the following notices to the program.  It is safest
+to attach them to the start of each source file to most effectively
+state the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+    ntEdit: scalable genome sequence polishing
+    Copyright (C) 2018-2019 BC Cancer
+
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+Also add information on how to contact you by electronic and paper mail.
+
+  If the program does terminal interaction, make it output a short
+notice like this when it starts in an interactive mode:
+
+    ntEdit  Copyright (C) 2018-2019  Rene Warren @ BC Cancer
+    This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+    This is free software, and you are welcome to redistribute it
+    under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License.  Of course, your program's commands
+might be different; for a GUI interface, you would use an "about box".
+
+  You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+<http://www.gnu.org/licenses/>.
+
+  The GNU General Public License does not permit incorporating your program
+into proprietary programs.  If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library.  If this is what you want to do, use the GNU Lesser General
+Public License instead of this License.  But first, please read
+<http://www.gnu.org/philosophy/why-not-lgpl.html>.
diff --git a/recipes/pass/build.sh b/recipes/pass/build.sh
new file mode 100755
index 0000000000000..5bf1eeb9bd3a7
--- /dev/null
+++ b/recipes/pass/build.sh
@@ -0,0 +1,3 @@
+#!/bin/bash
+mkdir -p ${PREFIX}/bin
+cp PASS ${PREFIX}/bin
\ No newline at end of file
diff --git a/recipes/pass/meta.yaml b/recipes/pass/meta.yaml
new file mode 100644
index 0000000000000..96d7ce28ab436
--- /dev/null
+++ b/recipes/pass/meta.yaml
@@ -0,0 +1,33 @@
+{% set version = "0.3.1" %}
+{% set version_tar = "0-3-1" %}
+{% set name = "pass" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/bcgsc/{{ name | upper }}/releases/download/v{{ version }}/pass_v{{ version_tar}}.tar.gz
+  sha256: 813fab567b1159c6dc32ed8ad537d19c50e70bde347b4e8b1249a4ece1de4383
+
+build:
+  noarch: generic
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('pass', max_pin="x") }}
+
+requirements:
+  run:
+    - perl
+
+test:
+  commands:
+    - PASS -h | grep "Usage"
+
+about:
+  summary: Proteome Assembler with Short Sequence peptides
+  home: https://github.com/bcgsc/PASS
+  license: GPL-3.0-only
+  license_file: LICENSE
+  doc_url: https://github.com/bcgsc/PASS
+
diff --git a/recipes/pasta/build.sh b/recipes/pasta/build.sh
index 3ef8da204e5fe..ef32e2c5760ad 100644
--- a/recipes/pasta/build.sh
+++ b/recipes/pasta/build.sh
@@ -2,46 +2,31 @@
 
 set -eu -o pipefail
 
-work_dir=$PREFIX/pasta-build
-install_dir=$PREFIX/bin
-
-mkdir -p $work_dir
-mkdir -p $work_dir/pasta
-
-cp -R ./* $work_dir/pasta
-cd $work_dir
-
+# obtain opal.jar from Siavash's extra repo
 unamestr=`uname`
 if [ $unamestr == 'Linux' ];
 then
-    wget --no-check-certificate https://github.com/smirarab/sate-tools-linux/archive/a3e6f56.tar.gz
-    tar -xzf a3e6f56.tar.gz
-    mv sate-tools-linux-a3e6f56372599ffacf1bd43adb2d67cf361228e2 sate-tools-linux
-    cd pasta
-    $PYTHON setup.py install --single-version-externally-managed --record=/tmp/record.txt
-    mkdir $install_dir/sate-tools-linux
-    cp -R $work_dir/sate-tools-linux/* $install_dir/sate-tools-linux/
-    # Handle a PASTA bug.
-    cp $install_dir/sate-tools-linux/hmmalign $install_dir/sate-tools-linux/hmmeralign
-    cp $install_dir/sate-tools-linux/hmmbuild $install_dir/sate-tools-linux/hmmerbuild
-    # So tools are available in the bin directory.
-    ln -s $install_dir/sate-tools-linux/* $install_dir/
+    wget --no-check-certificate https://github.com/smirarab/sate-tools-linux/raw/master/opal.jar -O $PREFIX/bin/opal.jar
+    mkdir -p ../sate-tools-linux/mafftdir/bin ../sate-tools-linux/mafftdir/libexec  # fake existens of tool collection
 elif [ $unamestr == 'Darwin' ];
 then
-    export DYLD_LIBRARY_PATH=$PREFIX/lib
-    wget --no-check-certificate https://github.com/smirarab/sate-tools-mac/archive/0712214.tar.gz
-    tar -xzf 0712214.tar.gz
-    mv sate-tools-mac-0712214e20152b2ec989fc102602afa53d3a7b1a sate-tools-mac
-    cd pasta
-    $PYTHON setup.py install --single-version-externally-managed --record=/tmp/record.txt
-    mkdir $install_dir/sate-tools-mac
-    cp -R $work_dir/sate-tools-mac/* $install_dir/sate-tools-mac/
-    # Handle a PASTA bug.
-    cp $install_dir/sate-tools-mac/hmmalign $install_dir/sate-tools-mac/hmmeralign
-    cp $install_dir/sate-tools-mac/hmmbuild $install_dir/sate-tools-mac/hmmerbuild
-    # So tools are available in the bin directory.
-    ln -s $install_dir/sate-tools-mac/* $install_dir/
+    wget --no-check-certificate  https://github.com/smirarab/sate-tools-mac/raw/master/opal.jar -O $PREFIX/bin/opal.jar
+    mkdir -p ../sate-tools-mac/mafftdir/bin ../sate-tools-mac/mafftdir/libexec  # fake existens of tool collection
 fi
 
-mkdir $install_dir/pasta
-cp -R $work_dir/pasta/* $install_dir/pasta/
+# Handle a PASTA bug.
+ln -s $PREFIX/bin/hmmalign $PREFIX/bin/hmmeralign
+ln -s $PREFIX/bin/hmmbuild $PREFIX/bin/hmmerbuild
+
+# copy files for tests to shared conda directory
+mkdir -p $PREFIX/share/pasta/data/
+cp -v data/small.fasta $PREFIX/share/pasta/data/
+
+# install pasta itself
+$PYTHON setup.py install --single-version-externally-managed --record=record.txt
+cp bin/treeshrink $PREFIX/bin/treeshrink
+
+# "rename" raxml binaries, after pasta's setup.py did copy bundled raxml versions into bin/
+rm -f -v $PREFIX/bin/raxml $PREFIX/bin/raxmlp
+ln -s $PREFIX/bin/raxmlHPC $PREFIX/bin/raxml
+ln -s $PREFIX/bin/raxmlHPC-PTHREADS $PREFIX/bin/raxmlp
diff --git a/recipes/pasta/fix_tooldir.patch b/recipes/pasta/fix_tooldir.patch
new file mode 100644
index 0000000000000..8a8d25024fb09
--- /dev/null
+++ b/recipes/pasta/fix_tooldir.patch
@@ -0,0 +1,28 @@
+--- pasta/__init__.py	2023-12-04 08:02:14.754964843 +0100
++++ pasta/__init__.condafixed.py	2023-12-04 09:36:40.981661306 +0100
+@@ -20,7 +20,7 @@
+ PROGRAM_LONG_DESCRIPTION = """
+ PASTA performs iterative realignment and tree inference, similar to SATe, but uses a very different merge algorithm which improves running time, memory usage, and accuracy. The current code is heavily based on SATe, with lots of modifications, many related to algorithmic differences between PASTA and SATe, but also many scalability improvements (parallelization, tree parsing, defaults, etc.)
+ 
+-Minimally you must provide a sequence file (with the '--input' option); a starting tree is optional. By default, important algorithmic parameters are set based on automatic rules. 
++Minimally you must provide a sequence file (with the '--input' option); a starting tree is optional. By default, important algorithmic parameters are set based on automatic rules.
+ 
+ The command line allows you to alter the behavior of the algorithm (termination criteria, when the algorithm switches to "Blind" acceptance of new alignments, how the tree is decomposed to find subproblems to be used, and the external tools to use).
+ 
+@@ -251,8 +251,9 @@
+     if "PASTA_TOOLS_RUNDIR" in os.environ:
+         bin_path = os.path.expanduser(os.path.expandvars(os.environ["PASTA_TOOLS_RUNDIR"]))
+     else:
+-        home_path = pasta_home_dir()
+-        bin_path = os.path.join(home_path, pasta_tools_deploy_subpath())
++        bin_path = os.path.join(os.path.abspath(os.environ['CONDA_PREFIX']), 'bin')  # injected via conda patching process
++        # home_path = pasta_home_dir()
++        # bin_path = os.path.join(home_path, pasta_tools_deploy_subpath())
+     if os.path.exists(bin_path) or not default_to_dev_dir:
+         return bin_path
+     try:
+@@ -288,4 +289,3 @@
+         raise ToolsDirNotFoundError(paths_tried=[bin_path],
+                 env_var_name="PASTA_TOOLS_DEVDIR")
+     return bin_path
+-
diff --git a/recipes/pasta/meta.yaml b/recipes/pasta/meta.yaml
index d3cedf63e6eb0..e98629dfcff09 100644
--- a/recipes/pasta/meta.yaml
+++ b/recipes/pasta/meta.yaml
@@ -1,33 +1,52 @@
+{% set version = "1.9.0" %}
+{% set sha256 = "6f816aebe00b7b6bb78a250ad45f5aa2aa8eff0f9719736f05b0597dd3b1f9a1" %}
+
 package:
   name: pasta
-  version: "1.7.8"
+  version: '{{version}}'
 
 source:
-  url: https://github.com/smirarab/pasta/archive/43076b8.tar.gz
-  sha256: 5eecec1710790df642696d1a52ecf723e5f02dd94e971427117344342a7c2a42
+  - url: https://github.com/smirarab/pasta/archive/v{{version}}.tar.gz
+    sha256: '{{sha256}}'
+    patches:
+      - fix_tooldir.patch  # ensure PASTA "knows" where to find third party tools
+      - mpstart.patch  # issue in OSX py38 (not in Linux nor OSX py37): RuntimeError: An attempt has been made to start a new process before the current process has finished its bootstrapping phase.
 
 build:
-  number: 4
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('pasta', max_pin="x") }}
 
 requirements:
-  build:
-    - {{ compiler('c') }}
-
   host:
     - python
     - setuptools
-    - dendropy >=4.1.0
+    - dendropy <=4.5.1
     - wget
     - openjdk
     - pcre
     - pymongo >=3.3.0
+    - clustalw
+    - fasttree
+    - raxml
+    - muscle <4  # later versions expects other cmd argument names
+    - mafft
+    - hmmer ==3.1b2
+    - prank
 
   run:
     - python
-    - dendropy >=4.1.0
+    - dendropy <=4.5.1  # later version do not expose _convert_node_to_root_polytomy
     - openjdk
     - pcre
     - pymongo >=3.3.0
+    - clustalw
+    - fasttree
+    - raxml
+    - muscle <4  # later versions expects other cmd argument names
+    - mafft
+    - hmmer ==3.1b2
+    - prank
 
 test:
   imports:
@@ -37,12 +56,22 @@ test:
     - clustalw2 -help | grep OPTIONS
     - hmmalign -h | grep HMMER
     - hmmbuild -h | grep HMMER
-    - muscle -version | grep MUSCLE
+    - muscle -version | grep -i MUSCLE
     - prank -help | grep prank
-    - raxml -h | grep raxmlHPC
-    - raxmlp -h | grep raxmlHPC
+    - raxml -h | grep -i raxml
+    - raxmlp -h | grep -i raxml
+    - export PASTA_LOGGING_LEVEL=DEBUG; export PASTA_LOGGING_FORMAT=RICH; run_pasta.py -i $PREFIX/share/pasta/data/small.fasta
+    # we need support from upstream to fix this special execution for OSX specific - export PASTA_LOGGING_LEVEL=DEBUG; export PASTA_LOGGING_FORMAT=RICH; run_pasta.py -i $PREFIX/share/pasta/data/small.fasta --tree-estimator raxml
 
 about:
   home: https://github.com/smirarab/pasta
-  license: GNU General Public License v3 or later (GPLv3+)
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE
   summary: 'An implementation of the PASTA (Practical Alignment using Sate and TrAnsitivity) algorithm'
+
+extra:
+  skip-lints:
+    # necessary, because pasta is NOT platform independent:
+    # during build time, platform specific binaries for mafft/raxml/muscle/... are copied into the PREFIX/bin dir
+    - should_be_noarch_generic
diff --git a/recipes/pasta/mpstart.patch b/recipes/pasta/mpstart.patch
new file mode 100644
index 0000000000000..4766807f0094d
--- /dev/null
+++ b/recipes/pasta/mpstart.patch
@@ -0,0 +1,12 @@
+--- run_pasta.py	2023-12-04 14:25:42.341227081 +0100
++++ run_pasta.mpstart.py	2023-12-04 14:25:34.944972464 +0100
+@@ -22,6 +22,9 @@
+ # Jiaye Yu and Mark Holder, University of Kansas
+ 
+ if __name__ == "__main__":
++    import multiprocessing as mp
++    mp.set_start_method('fork')  # how to create child processes. Does not work with default in OSX py38
++
+     import os
+     import sys
+     import pasta
diff --git a/recipes/pastml/meta.yaml b/recipes/pastml/meta.yaml
index 6a2f5557e6daf..b2a90ab3529f6 100644
--- a/recipes/pastml/meta.yaml
+++ b/recipes/pastml/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pastml" %}
-{% set version = "1.9.40" %}
+{% set version = "1.9.43" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 5334bc8de70a968117240b90d90878ac935be18de6e6e485fb1a8f90cd539fea
+  sha256: 04307d153b92b7b25b8ddda49ff388884b9e5fd394856b256a459b497af02f82
 
 build:
   number: 0
@@ -16,12 +16,14 @@ build:
     - pastml = pastml.acr:main
     - geomap = pastml.visualisation.generate_geomap:main
     - transition_counter = pastml.utilities.transition_counter:main
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation"
+  run_exports:
+    - {{ pin_subpackage('pastml', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - python >=3.8
+    - python >=3.9
   run:
     - biopython >=1.70
     - ete3 >=3.1.1
@@ -29,7 +31,7 @@ requirements:
     - jinja2 >=2.11.0
     - numpy >=1.22
     - pandas >=1.0.0
-    - python >=3.8
+    - python >=3.9
     - scipy >=1.5.0
 
 test:
@@ -53,8 +55,8 @@ about:
     node states based on the tip states, with a selection of maximum likelihood
     and parsimonious methods. The result is then visualised as a zoomable html
     map.
-  license: GPL-3.0
-  license_family: GPL
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
   doc_url: https://pastml.pasteur.fr/help
   dev_url: https://github.com/evolbioinfo/pastml
diff --git a/recipes/pasty/meta.yaml b/recipes/pasty/meta.yaml
index 88a4d4523078c..8b2220b2bdfb3 100644
--- a/recipes/pasty/meta.yaml
+++ b/recipes/pasty/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pasty" %}
-{% set version = "1.0.2" %}
+{% set version = "1.0.3" %}
 
 package:
   name: {{ name | lower }}
@@ -7,7 +7,7 @@ package:
 
 source:
   url: https://github.com/rpetit3/pasty/archive/v{{ version }}.tar.gz
-  sha256: be4f407efc5db93ed2b42fd0fb67d84791902316b5522b336827d7482894460a
+  sha256: 96b43053e7411f8e071355d604cdda02fd6bf03ebec199fdbaa85afe251623b6
 
 build:
   number: 0
diff --git a/recipes/pathogen-profiler/meta.yaml b/recipes/pathogen-profiler/meta.yaml
index 26683ef848662..fa717d8bd2388 100644
--- a/recipes/pathogen-profiler/meta.yaml
+++ b/recipes/pathogen-profiler/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "pathogen-profiler" %}
-{% set version = "2.0.4" %}
-{% set sha256 = "adede9bd1f8a428cf9b82056eb57703a70303e867918eacdf0a92454ac11d710" %}
+{% set version = "4.2.0" %}
+{% set sha256 = "db1744578d50779069007216c5c8f359392d5e0e83ebe2232aa299acc8b30cb3" %}
 
 package:
   name: {{name}}
@@ -13,26 +13,28 @@ source:
 build:
   script: python -m pip install --no-deps --ignore-installed .
   noarch: python
-  number: 1
+  number: 0
+  run_exports:
+    - { pin_subpackage('pathogen-profiler', max_pin="x") }
 
 requirements:
   host:
     - python
     - pip
   run:
-    - python >=3.7
+    - python >=3.10
     - git
     - trimmomatic
     - bwa
     - minimap2
     - parallel
-    - samtools >=1.10
-    - bcftools >=1.10
+    - samtools >=1.12
+    - bcftools >=1.12
     - tqdm
-    - delly =0.8.7
+    - delly >=0.8.7
     - gatk4
     - bedtools
-    - freebayes >=1.3.5
+    - freebayes =1.3.6
     - samclip
     - snpeff >=5.1
     - requests
@@ -41,7 +43,14 @@ requirements:
     - openjdk >=11.0.8
     - kmc >=3.2.1
     - dsk >=2.2
-    - cryptography >=39.0.1
+    - rich-argparse 
+    - joblib >=1.3.0
+    - pysam
+    - pydantic >=2.6
+    - tomli
+    - itol-config
+    - seqkit
+    - sourmash
     
 test:
   imports:
diff --git a/recipes/pb-falcon/meta.yaml b/recipes/pb-falcon/meta.yaml
index 5ea3122f61ee8..dc4734f3db4f2 100644
--- a/recipes/pb-falcon/meta.yaml
+++ b/recipes/pb-falcon/meta.yaml
@@ -12,8 +12,10 @@ source:
     folder: pb-falcon
 
 build:
-  number: 4
+  number: 5
   skip: True # [py27 or py36 or osx]
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   build:
@@ -31,9 +33,9 @@ requirements:
     - python
     - networkx >=1.9.1
     - future >=0.16.0
-    - python-edlib>=1.2.4
+    - python-edlib >=1.2.4
     - python-intervaltree
-    - python-msgpack>=0.6.1
+    - python-msgpack >=0.6.1
     - numpy
     - pysam
 
@@ -55,3 +57,7 @@ about:
     - pb-cdunn
     - isovic
     - zkronenberg
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/pbbam/meta.yaml b/recipes/pbbam/meta.yaml
index 93a8fe89eced1..6ddac564b833a 100644
--- a/recipes/pbbam/meta.yaml
+++ b/recipes/pbbam/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "pbbam" %}
-{% set version = "2.1.0" %}
-{% set sha256 = "605944f09654d964ce12c31d67e6766dfb1513f730ef5d4b74829b2b84dd464f" %}
+{% set version = "2.4.0" %}
+{% set sha256 = "a386a5231b06b0ea660d81abe8081041c200d1817710b89bc9888b485a7aab26" %}
 
 package:
   name: {{ name }}
@@ -11,7 +11,7 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 5
+  number: 0
   skip: True  # [osx]
   run_exports:
     - {{ pin_subpackage('pbbam', max_pin='x.x') }}
@@ -26,7 +26,7 @@ requirements:
     - boost-cpp
     - zlib
     - htslib
-    - pbcopper 2.0.0*
+    - pbcopper 2.3.*
   run:
     - htslib
     - pbtk
diff --git a/recipes/pbcopper/meta.yaml b/recipes/pbcopper/meta.yaml
index baa218e502e24..dc5edaf7d1ff7 100644
--- a/recipes/pbcopper/meta.yaml
+++ b/recipes/pbcopper/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "pbcopper" %}
-{% set version = "2.2.0" %}
-{% set sha256 = "e6593835778cc31fd19dcaced49df81398761bb6a6b9cfb9c0367c9c945340b1" %}
+{% set version = "2.3.0" %}
+{% set sha256 = "5a183e4a4c860b7e4616b7dda6a3e04fc447d91aa8d75cfbe9b66bebc909c631" %}
 
 package:
   name: {{ name }}
@@ -22,7 +22,7 @@ extra:
     - armintoepfer
 
 build:
-  number: 2
+  number: 0
   skip: True  # [osx]
   run_exports:
     - {{ pin_subpackage('pbcopper', max_pin='x.x') }}
diff --git a/recipes/pbfusion/meta.yaml b/recipes/pbfusion/meta.yaml
index ca69e87d0f0cd..b2a63c19e6a0e 100644
--- a/recipes/pbfusion/meta.yaml
+++ b/recipes/pbfusion/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "pbfusion" %}
-{% set version = "0.3.0" %}
-{% set pbfusion_sha256 = "ef9767af7e82bd1e664711e7521d7a8370a41f101cccf1db4a58895d9f88934c" %}
+{% set version = "0.4.1" %}
+{% set pbfusion_sha256 = "c6abde2ee1f88355158bf1c655e5ae754f942708f7addbaef8d626fdebfcfe7a" %}
 
 package:
   name: {{ name }}
@@ -24,6 +24,8 @@ extra:
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('pbfusion', max_pin="x") }}
 
 test:
   commands:
diff --git a/recipes/pbgzip/build.sh b/recipes/pbgzip/build.sh
index 23e9ca4d9a87e..af8355c3b5830 100644
--- a/recipes/pbgzip/build.sh
+++ b/recipes/pbgzip/build.sh
@@ -4,5 +4,5 @@ sh autogen.sh
 ./configure --prefix ${PREFIX} --enable-igzip
 export C_INCLUDE_PATH=${PREFIX}/include
 export LIBRARY_PATH=${PREFIX}/lib
-make
+make -j${CPU_COUNT}
 make install
diff --git a/recipes/pbgzip/meta.yaml b/recipes/pbgzip/meta.yaml
index 9dd7a7132b0cf..dc3cfeeb5b6d3 100644
--- a/recipes/pbgzip/meta.yaml
+++ b/recipes/pbgzip/meta.yaml
@@ -7,8 +7,9 @@ source:
   sha256: 544820be0da38f6af7be18792d00d6d3dd2fe3f7f3b08a67c3aa35fb1bbeaeb1
 
 build:
-  number: 4
-  skip: False
+  number: 5
+  run_exports:
+    - {{ pin_subpackage('pbgzip', max_pin=None) }}
 
 requirements:
   build:
@@ -31,3 +32,7 @@ about:
   home: https://github.com/nh13/pbgzip
   summary: Parallel Block GZIP
   license: MIT/Expat
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/pbiotools/meta.yaml b/recipes/pbiotools/meta.yaml
index 1182690b6db48..df83e3e1fb257 100644
--- a/recipes/pbiotools/meta.yaml
+++ b/recipes/pbiotools/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "4.0.1" %}
+{% set version = "4.0.2" %}
 
 package:
   name: pbiotools
@@ -6,13 +6,14 @@ package:
 
 source:
   url: https://github.com/dieterich-lab/pbiotools/archive/{{version}}.tar.gz
-  sha256: 2d1a48375537a25f5b700dd69578099823acabbaf210dc57ced8902647948a69
+  sha256: bff34054afa28c70d90dfaf78bcebceb6d191965490da5ad4f5ea1287a2048c9
 
 build:
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vvv"
   noarch: python
-  number: 1
+  number: 0
   entry_points:
+    - add-mygene-info-to-orfs = pbiotools.utils.pgrms.add_mygene_info_to_orfs:main
     - bam-to-wiggle = pbiotools.utils.pgrms.bam_to_wiggle:main
     - bedx-to-bedy = pbiotools.utils.pgrms.bedx_to_bedy:main
     - bed12-to-gtf = pbiotools.utils.pgrms.bed12_to_gtf:main
@@ -43,17 +44,19 @@ build:
     - split-bed12-blocks = pbiotools.utils.pgrms.split_bed12_blocks:main
     - split-long-chromosomes = pbiotools.utils.pgrms.split_long_chromosomes:main
     - subtract-bed = pbiotools.utils.pgrms.subtract_bed:main
+  run_exports:
+    - {{ pin_subpackage('pbiotools', max_pin='x') }}
 
 requirements:
   host:
-    - python
+    - python >=3.7,<3.11
     - pip
   run:
-    - python
+    - python >=3.7,<3.11
     - numpy
     - pandas
     - scipy
-    - dask
+    - dask-core
     - joblib
     - scikit-learn
     - tqdm
@@ -74,6 +77,7 @@ test:
     - pbiotools.misc
     - pbiotools.utils
   commands:
+    - add-mygene-info-to-orfs --help
     - bam-to-wiggle --help
     - bedx-to-bedy --help
     - bed12-to-gtf --help
diff --git a/recipes/pbmm2/meta.yaml b/recipes/pbmm2/meta.yaml
index 39f4e2a2d0012..1f60756da774d 100644
--- a/recipes/pbmm2/meta.yaml
+++ b/recipes/pbmm2/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "pbmm2" %}
-{% set version = "1.12.0" %}
-{% set sha256 = "9a8ab6a4835d225885fdeb7ac66506f9819b86f72e2da697c0ef472cc368284f" %}
+{% set version = "1.13.1" %}
+{% set sha256 = "4e764bbea99a4c712fb74e4d6c82c227562d431c47670628f1d004b2f0e8a8db" %}
 
 package:
   name: {{ name }}
@@ -13,7 +13,8 @@ source:
 build:
   skip: True  # [osx]
   number: 0
-
+  run_exports:
+    - {{ pin_subpackage("pbmm2", max_pin="x") }}
 about:
   home: https://github.com/PacificBiosciences/pbmm2
   license: BSD-3-Clause-Clear
diff --git a/recipes/pbpigeon/meta.yaml b/recipes/pbpigeon/meta.yaml
index ee74d485d69a8..20965d16c23e4 100644
--- a/recipes/pbpigeon/meta.yaml
+++ b/recipes/pbpigeon/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pbpigeon" %}
-{% set version = "1.1.0" %}
+{% set version = "1.2.0" %}
 
 package:
   name: {{ name }}
@@ -7,17 +7,17 @@ package:
 
 source:
   - url: https://github.com/PacificBiosciences/pigeon/releases/download/v{{ version }}/pigeon
-    sha256: d35b090536ef2d9e9af5a6a5e91ccd87bc5214a275d88a145c73fdc74374c0f4
+    sha256: 0202818fed1247d21b79bf58811402f7af2481b3731ebc1094b161cf03c0e009
 
 build:
   # repackaged binaries
   skip: True  # [osx]
   number: 0
-
+  run_exports:
+    - {{ pin_subpackage('pbpigeon', max_pin='x.x') }}
 requirements:
   build:
     - {{ compiler('cxx') }}
-
 test:
   commands:
     - pigeon -h
@@ -30,3 +30,8 @@ about:
 extra:
   recipe-maintainers:
     - jmattick
+    - armintoepfer
+    - pb-dseifert
+  skip-lints:
+    #repackaged binary
+    - should_be_noarch_generic
diff --git a/recipes/pbsim3/build.sh b/recipes/pbsim3/build.sh
new file mode 100755
index 0000000000000..dadd7a3b4ab3b
--- /dev/null
+++ b/recipes/pbsim3/build.sh
@@ -0,0 +1,12 @@
+#!/bin/bash
+
+set -eux -o pipefail
+
+outdir=$PREFIX/data
+mkdir -p $outdir
+cp -R ./data/* $outdir/
+
+autoreconf -fi
+./configure --prefix="${PREFIX}"
+make
+make install
diff --git a/recipes/pbsim3/meta.yaml b/recipes/pbsim3/meta.yaml
new file mode 100644
index 0000000000000..c9902c70eb6ef
--- /dev/null
+++ b/recipes/pbsim3/meta.yaml
@@ -0,0 +1,44 @@
+{% set name = "pbsim3" %}
+{% set version = "3.0.4" %}
+{% set sha256 = "d9dd51d7522d9f2f21d3cab6f5f7ff0131702cba73dd1baa0b7d13f813d3854e" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/yukiteruono/pbsim3/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+  include-package-data: true
+  manifest:
+  - recursive-include data *
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('cxx') }}
+    - autoconf
+    - automake
+  host:
+
+test:
+  commands:
+    - "pbsim 2>&1 | grep -q 'USAGE: pbsim'"
+
+about:
+  home: https://github.com/yukiteruono/pbsim3
+  license: GPLv2
+  license_file: COPYING
+  summary: "A simulator for all types of Pacific Biosciences (PacBio) and Oxford Nanopore Technologies (ONT) long reads"
+
+extra:
+  recipe-maintainers:
+    - idfarbanecha
+    - notestaff
+  identifiers:
+    - doi:10.1093/nargab/lqac092
diff --git a/recipes/pbskera/meta.yaml b/recipes/pbskera/meta.yaml
index 557d1cfb69500..39a8c65d89706 100644
--- a/recipes/pbskera/meta.yaml
+++ b/recipes/pbskera/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "pbskera" %}
-{% set version = "1.1.0" %}
-{% set pbskera_sha256 = "950fece28fb38f7043673c38a55f57606fe6e8be14784f9d3bbec222ca4acc9c" %}
+{% set version = "1.2.0" %}
+{% set pbskera_sha256 = "0385ab4d67377cd6ed596eccd5df973c03d78561db639d84f9ff557332f745be" %}
 
 package:
   name: {{ name }}
@@ -18,10 +18,16 @@ about:
 extra:
   recipe-maintainers:
     - zeeev
+    - jmattick
+  skip-lints:
+    #repackaged binary
+    - should_be_noarch_generic
     
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('pbskera', max_pin='x.x') }}
 
 test:
   commands:
diff --git a/recipes/pbstarphase/build.sh b/recipes/pbstarphase/build.sh
new file mode 100644
index 0000000000000..9ea2f67d671bb
--- /dev/null
+++ b/recipes/pbstarphase/build.sh
@@ -0,0 +1,7 @@
+#!/usr/bin/env bash
+
+mkdir -p "${PREFIX}"/bin
+# bioconda auto-extract for us apparently
+# tar -xzf pbstarphase-*.tar.gz
+md5sum -c pbstarphase.md5
+cp pbstarphase "${PREFIX}"/bin/
diff --git a/recipes/pbstarphase/meta.yaml b/recipes/pbstarphase/meta.yaml
new file mode 100644
index 0000000000000..6ac8e84afc56f
--- /dev/null
+++ b/recipes/pbstarphase/meta.yaml
@@ -0,0 +1,35 @@
+{% set name = "pbstarphase" %}
+{% set version = "0.10.2" %}
+{% set sha256 = "4e1bd266d770c4fa27c4782da6ad0f02882923312676bbfa9d2f9554dce8f829" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/PacificBiosciences/pb-StarPhase/releases/download/v{{ version }}/pbstarphase-v{{ version }}-x86_64-unknown-linux-gnu.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage('pbstarphase', max_pin="x") }}
+
+test:
+  commands:
+    - pbstarphase --version
+
+about:
+  home: https://github.com/PacificBiosciences/pb-StarPhase
+  license: BSD-3-Clause-Clear
+  summary: A phase-aware pharmacogenomic diplotyper for PacBio sequencing data
+
+extra:
+  recipe-maintainers:
+    - holtjma
+    - ctsa
+    - zeeev
+  skip-lints:
+    - should_use_compilers
+    - should_be_noarch_generic
diff --git a/recipes/pbtk/meta.yaml b/recipes/pbtk/meta.yaml
index b690d3fc50aa3..6192456fd7a53 100644
--- a/recipes/pbtk/meta.yaml
+++ b/recipes/pbtk/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "pbtk" %}
-{% set version = "3.1.0" %}
-{% set sha256 = "00d03f07071c1926282fe9de460ed9f505fe4caf5691ffd5df6a422ab5a2fc81" %}
+{% set version = "3.1.1" %}
+{% set sha256 = "4dbe08d880a4b54d7c84ecdf9849feead71ac5330277a66f57a2915447169814" %}
 
 package:
   name: {{ name }}
@@ -26,6 +26,8 @@ extra:
 build:
   number: 0
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage('pbtk', max_pin='x.x') }}
 
 test:
   commands:
diff --git a/recipes/pcaone/meta.yaml b/recipes/pcaone/meta.yaml
index 0ad03afefb34d..a2a1ec298e3f8 100644
--- a/recipes/pcaone/meta.yaml
+++ b/recipes/pcaone/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.3.4" %}
-{% set sha256 = "6d767af1f7a7df8741c2440d155e45c3536981aa9d13f7cd229ef7318a81b349" %}
+{% set version = "0.4.4" %}
+{% set sha256 = "39e9b2fb3370ee584fbeed8522260c44bb6053489819057f1a232267a526f72a" %}
 
 
 package:
@@ -12,6 +12,8 @@ source:
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage('pcaone', max_pin="x") }}
 
 requirements:
   build:
@@ -30,7 +32,6 @@ requirements:
   run:
     - mkl
     - intel-openmp
-    - zlib
 
 test:
   commands:
diff --git a/recipes/pcst-fast/meta.yaml b/recipes/pcst-fast/meta.yaml
index bf2fc543c6499..579a73edb174d 100644
--- a/recipes/pcst-fast/meta.yaml
+++ b/recipes/pcst-fast/meta.yaml
@@ -1,18 +1,20 @@
 {% set name = "pcst-fast" %}
-{% set version = "1.0.8" %}
+{% set version = "1.0.10" %}
 
 package:
   name: "{{ name }}"
   version: "{{ version }}"
 
 source:
-  url: https://github.com/fraenkel-lab/pcst_fast/archive/refs/tags/1.0.8.tar.gz
-  sha256: fea6672830d539ebcf29e8a2f1a7b7771ced332bea6e66b4e1093931e62ce5df
+  url: https://files.pythonhosted.org/packages/d4/fd/64b51c867bad63e6622ff97cad6230b94b19b5a61e30424cd69c8353091c/pcst_fast-{{ version }}.tar.gz
+  sha256: 3b5694110ce2e004471f383267d5e4ab7fe1ba9828954e8c42560ac1e42b25e6
 
 build:
-  number: 1
-  skip: True  # [ py!=36 ]
-  script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
+  number: 0
+  skip: True  # [py < 38]
+  script: {{ PYTHON }} -m pip install . --no-build-isolation --no-deps --use-pep517 -vvv
+  run_exports:
+    - {{ pin_subpackage('pcst-fast', max_pin="x") }}
 
 requirements:
   build:
@@ -21,7 +23,7 @@ requirements:
     - pip
     - pybind11 >=2.4
     - python
-    - setuptools
+    - setuptools_scm
   run:
     - pybind11 >=2.4
     - python
@@ -34,7 +36,8 @@ about:
   home: https://github.com/fraenkel-lab/pcst_fast
   license: MIT
   license_family: MIT
-  summary: Implementation for PCST
+  license_file: LICENSE.txt
+  summary: "A fast implementation of the Goemans-Williamson scheme for the PCST (prize-collecting Steiner tree/forest) problem."
 
 extra:
   recipe-maintainers:
diff --git a/recipes/ostir/LICENSE b/recipes/peaks2utr/LICENSE
similarity index 99%
rename from recipes/ostir/LICENSE
rename to recipes/peaks2utr/LICENSE
index 02fefceb563f1..f288702d2fa16 100644
--- a/recipes/ostir/LICENSE
+++ b/recipes/peaks2utr/LICENSE
@@ -631,8 +631,8 @@ to attach them to the start of each source file to most effectively
 state the exclusion of warranty; and each file should have at least
 the "copyright" line and a pointer to where the full notice is found.
 
-    OSTIR: Open Source Translation Initiation Rates
-    Copyright (C) 2021  Cameron Roots, Jeffrey Barrick
+    <one line to give the program's name and a brief idea of what it does.>
+    Copyright (C) <year>  <name of author>
 
     This program is free software: you can redistribute it and/or modify
     it under the terms of the GNU General Public License as published by
diff --git a/recipes/peaks2utr/meta.yaml b/recipes/peaks2utr/meta.yaml
new file mode 100644
index 0000000000000..3d0de3bfbe81d
--- /dev/null
+++ b/recipes/peaks2utr/meta.yaml
@@ -0,0 +1,52 @@
+{% set name = "peaks2utr" %}
+{% set version = "1.2.6" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/peaks2utr-{{ version }}.tar.gz
+  sha256: ba17dd81b942e6b846804b03154358e331c489d7bc12573711c551faece11fed
+
+build:
+  number: 0
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  run_exports:
+    - {{ pin_subpackage('peaks2utr', max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.8,<3.12
+    - wheel
+    - pip
+  run:
+    - python >=3.8,<3.12
+    - requests
+    - gffutils ==0.10.1
+    - pysam
+    - macs2 ==2.2.9.1
+    - numpy >=1.21.4
+    - tqdm
+    - asgiref
+    - psutil
+    - pybedtools
+    - typing-extensions
+    - importlib-resources
+    - zipp
+
+test:
+  imports:
+    - peaks2utr
+
+about:
+  home: https://github.com/haessar/peaks2utr
+  summary: A robust, parallelized Python CLI for annotating three_prime_UTR
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE
+
+extra:
+  identifiers:
+    - doi:10.1093/bioinformatics/btad112
diff --git a/recipes/pecat/meta.yaml b/recipes/pecat/meta.yaml
index ecb814e661e0b..1f11b5bf2cede 100644
--- a/recipes/pecat/meta.yaml
+++ b/recipes/pecat/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "pecat" %}
-{% set version = "0.0.2" %}
-{% set sha256 = "e88f1e9be1de6f8c90ffb2309d8e271b541191f5d1fa5482aab48e6d5e626cbb" %}
+{% set version = "0.0.3" %}
+{% set sha256 = "e7a1165f5602ace31bf77a852a7b26fd640ddf0a5a55670ee6e1fb8788be2fc3" %}
 
 package:
   name: {{ name }}
@@ -11,8 +11,10 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 1
+  number: 0
   skip: True # [osx]
+  run_exports:
+    - {{ pin_subpackage('pecat', max_pin="x") }}
 
 requirements:
   build:
diff --git a/recipes/peer/build.sh b/recipes/peer/build.sh
new file mode 100644
index 0000000000000..1f1932d3cfc51
--- /dev/null
+++ b/recipes/peer/build.sh
@@ -0,0 +1,10 @@
+#!/bin/bash
+
+set -eux
+
+mkdir build
+cd build
+cmake ../ -DBUILD_PYTHON_PACKAGE=OFF -DBUILD_PEERTOOL=ON
+make -j $CPU_COUNT
+mkdir -p "${PREFIX}/bin"
+install src/peertool "${PREFIX}/bin"
diff --git a/recipes/peer/meta.yaml b/recipes/peer/meta.yaml
new file mode 100644
index 0000000000000..b24994dc6127a
--- /dev/null
+++ b/recipes/peer/meta.yaml
@@ -0,0 +1,38 @@
+{% set name = "peer" %}
+{% set version = "1.3" %}
+# no tags in upstream repository yet
+{% set commit = "40bc4b2cd92459ce42f44dfe279717436395f3f6" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/PMBio/peer/archive/{{ commit }}.tar.gz
+  sha256: 80a549354569ae5ec7d4d92c78e7f8fa72da08fcd11322611f737044c34861ed
+  patches:
+    - patches/0001-Comment-out-SWIG-package-search.patch
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - cmake
+    - make
+
+test:
+  commands:
+    - peertool --help | grep -q USAGE
+
+about:
+  home: https://github.com/PMBio/peer
+  license: GPL-2.0-or-later
+  license_file:
+    - LICENSE
+    - External/yaml-cpp/license.txt
+  summary: 'A collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods'
diff --git a/recipes/peer/patches/0001-Comment-out-SWIG-package-search.patch b/recipes/peer/patches/0001-Comment-out-SWIG-package-search.patch
new file mode 100644
index 0000000000000..6628b8077e44a
--- /dev/null
+++ b/recipes/peer/patches/0001-Comment-out-SWIG-package-search.patch
@@ -0,0 +1,31 @@
+From a66ffa0d4b5e0aca5a1de1ffad387eadef49447f Mon Sep 17 00:00:00 2001
+From: Travis Wrightsman <tw493@cornell.edu>
+Date: Mon, 5 Feb 2024 12:21:17 -0500
+Subject: [PATCH] Comment out SWIG package search
+
+---
+ CMakeLists.txt | 6 +++---
+ 1 file changed, 3 insertions(+), 3 deletions(-)
+
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index 80455af..0e0c66c 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -71,11 +71,11 @@ endif (BUILD_UNIVERSAL)
+ #for finding external libraries. 
+ #see /usr/local/share/cmake-2.6/Modules/Find*.cmake for more examples
+ 
+-find_package(SWIG REQUIRED)
+-include(${SWIG_USE_FILE})
++#find_package(SWIG REQUIRED)
++#include(${SWIG_USE_FILE})
+ 
+ include_directories(${CMAKE_CURRENT_SOURCE_DIR})
+-set(CMAKE_SWIG_FLAGS "")
++#set(CMAKE_SWIG_FLAGS "")
+ 
+ set(CMAKE_MODULE_PATH "${PEER_SOURCE_DIR}/cmake" ${CMAKE_MODULE_PATH})
+ include_directories(./include)
+-- 
+2.39.2
+
diff --git a/recipes/pegasusio/meta.yaml b/recipes/pegasusio/meta.yaml
index 046eedbbb6559..c217cf33b836f 100644
--- a/recipes/pegasusio/meta.yaml
+++ b/recipes/pegasusio/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pegasusio" %}
-{% set version = "0.8.1" %}
+{% set version = "0.9.0" %}
 
 package:
     name: {{ name|lower }}
@@ -7,14 +7,16 @@ package:
 
 source:
     url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-    sha256: "ea18b963315726a18819740b91df316f43c50b87f248092be601756b30f49d44"
+    sha256: "fc7d1b33d46418a216de50426e29af101268e510ea171b36458498293b5dfdcc"
 
 build:
     number: 0
-    skip: True  # [py<37]
+    skip: True  # [py < 37]
     entry_points:
         - pegasusio = pegasusio.__main__:main
-    script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv"
+    script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+    run_exports:
+        - {{ pin_subpackage('pegasusio', max_pin="x.x") }}
 
 requirements:
     build:
@@ -56,6 +58,7 @@ about:
     home: https://github.com/lilab-bcb/pegasusio
     doc_url: https://pegasusio.readthedocs.io
     license: BSD-3-Clause
+    license_family: BSD
     license_file: LICENSE
     summary: "PegasusIO is the IO package for Pegasus."
 
diff --git a/recipes/pegasuspy/meta.yaml b/recipes/pegasuspy/meta.yaml
index a6b3c6b3c8ec1..aa72e4d935028 100644
--- a/recipes/pegasuspy/meta.yaml
+++ b/recipes/pegasuspy/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pegasuspy" %}
-{% set version = "1.7.1" %}
+{% set version = "1.9.1.post1" %}
 
 package:
     name: {{ name|lower }}
@@ -7,15 +7,17 @@ package:
 
 source:
     url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-    sha256: d7dae5356cb7af85ba3cd5b82bae3d1c7d04955eb3bfbc5471acd99279005fbc
+    sha256: 0b1cfe8c7065ad686fd167f05da5bc246ec95700b04d6f1feae3e7d8595bac89
 
 
 build:
-    number: 2
-    skip: True  # [py<37 or py > 39]
+    number: 0
+    skip: True  # [py<38]
     entry_points:
-        - pegasus = pegasus.__main__:main
+      - pegasus = pegasus.__main__:main
     script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv"
+    run_exports:
+        - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
     build:
@@ -33,8 +35,7 @@ requirements:
         - loompy >=3
         - docopt
         - scipy >=1.7
-        - importlib_metadata >=0.7
-        - pegasusio >=0.5.1
+        - pegasusio >=0.9.0
         - psutil
         - threadpoolctl
         - adjusttext
@@ -52,12 +53,15 @@ requirements:
         - python-igraph >=0.8.0
         - scikit-learn >=0.23.2
         - scikit-misc
-        - seaborn
+        - seaborn >=0.13.0
         - statsmodels
         - pyfit-sne >=1.1.1
         - umap-learn >=0.5.2
         - xlsxwriter
         - wordcloud
+        - forceatlas2-python
+        # brought in by numba, trying to ensure it comes from conda-forge rather than defaults
+        - tbb
 
 test:
     imports:
diff --git a/recipes/pegs/meta.yaml b/recipes/pegs/meta.yaml
index 4b6a293b1df68..7aad68b4c5830 100644
--- a/recipes/pegs/meta.yaml
+++ b/recipes/pegs/meta.yaml
@@ -1,21 +1,23 @@
 {% set name = "pegs" %}
-{% set version = "0.6.5" %}
+{% set version = "0.6.6" %}
 
 package:
-  name: "{{ name|lower }}" 
+  name: "{{ name|lower }}"
   version: "{{ version }}"
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 33bbb01db501edba4081bb0970297f9abfd130623e5a11e821bb0369ee1f978c
+  sha256: b19059cb2de25ec3c9cbeafb333ffbac417fcd28ccf64680e7bb42ecacb4d467
 
 build:
   number: 0
   entry_points:
     - pegs = pegs.cli:pegs
     - mk_pegs_intervals = pegs.cli:mk_pegs_intervals
-  script: "{{ PYTHON }} -m pip install . -vv"
-  noarch: python 
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage('pegs', max_pin="x.x") }}
 
 requirements:
   host:
@@ -42,7 +44,7 @@ test:
 
 about:
   home: "https://github.com/fls-bioinformatics-core/pegs"
-  license: BSD
+  license: BSD-3-Clause
   license_family: BSD
   license_file: LICENSE
   summary: "Peak-set Enrichment of Gene-Sets (PEGS)"
diff --git a/recipes/peka/meta.yaml b/recipes/peka/meta.yaml
index b4b7a6adf5e1f..7e59f23423422 100644
--- a/recipes/peka/meta.yaml
+++ b/recipes/peka/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "PEKA" %}
-{% set version = "1.0.0" %}
+{% set version = "1.0.2" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,30 +7,32 @@ package:
 
 source:
   url: "https://github.com/ulelab/peka/archive/refs/tags/v{{ version }}.tar.gz"
-  sha256: b6e2dffcbb762cc0806025334fbd31f11fa7183aa5896d0630aa08f1c9b7dba5
+  sha256: 1742af7941be04b960e5153ef1eccf40781f72bf9d2a9063a97b54f27b76b01f
 
 build:
   number: 0
   entry_points:
     - peka = peka:main
-  script: "{{ PYTHON }} -m pip install . -vv --ignore-installed --no-deps"
+  script: "{{ PYTHON }} -m pip install . -vvv --no-build-isolation --no-deps"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('peka', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - python==3.7
+    - python >=3.7
   run:
-    - python==3.7
-    - matplotlib-base==3.1.2
-    - numpy==1.17.4
-    - pybedtools==0.8.0
-    - scipy==1.6.2
-    - seaborn==0.9.0
-    - plumbum==1.6.8
-    - scikit-learn==0.21.3
-    - pandas==0.24.2
-    - textdistance==4.1.3
+    - python >=3.7
+    - matplotlib-base
+    - {{ pin_compatible('numpy') }}
+    - pybedtools
+    - scipy
+    - seaborn
+    - plumbum
+    - scikit-learn
+    - pandas
+    - textdistance
 
 test:
   commands:
@@ -38,12 +40,16 @@ test:
 
 about:
   home: "https://github.com/ulelab/peka"
-  license: GPL-3.0
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
   summary: "Analysis of kmers located around locations of interest"
+  dev_url: "https://github.com/ulelab/peka"
 
 extra:
   recipe-maintainers:
     - marc-jones
     - codeprimate123
     - kkuret
+  identifiers:
+    - doi:10.1186/s13059-022-02755-2
diff --git a/recipes/peptide-shaker/meta.yaml b/recipes/peptide-shaker/meta.yaml
index dc53ec348e776..3c16f06cf6d56 100644
--- a/recipes/peptide-shaker/meta.yaml
+++ b/recipes/peptide-shaker/meta.yaml
@@ -1,7 +1,7 @@
 # Do not forget to update the version string in the peptide-shaker.py file
 {% set name = "PeptideShaker" %}
-{% set version = "2.2.25" %}
-{% set sha256 = "3f7c9ca91eb5b3ed5133e2f2f5fe0c7acacf9080032eff51ba2954ff686377f0"%}
+{% set version = "3.0.6" %}
+{% set sha256 = "9356fb98d8d70bde35d3b37b0de24b5b76943ae9103a1af250018c0204062951" %}
 
 package:
   name: peptide-shaker
@@ -10,6 +10,9 @@ package:
 build:
   number: 0
   noarch: generic
+  # Due to backend changes in v3.0.0, older PeptideShaker projects can not be opened in newer versions (v3.0.0+).
+  run_exports:
+    - {{ pin_subpackage('peptide-shaker', max_pin="x.x") }}
 
 source:
   url: https://genesis.ugent.be/maven2/eu/isas/peptideshaker/{{ name }}/{{ version }}/{{ name }}-{{ version }}.zip
@@ -28,7 +31,7 @@ test:
 about:
   home: "https://compomics.github.io/projects/peptide-shaker.html"
   dev_url: "https://github.com/compomics/peptide-shaker"
-  license: Apache License 2.0
+  license: Apache-2.0
   license_family: APACHE
   summary: Independent platform for interpretation of proteomics identification results
   description:
diff --git a/recipes/peptide-shaker/peptide-shaker.py b/recipes/peptide-shaker/peptide-shaker.py
index aeedc3f1b5400..54aedb2ae0e6f 100755
--- a/recipes/peptide-shaker/peptide-shaker.py
+++ b/recipes/peptide-shaker/peptide-shaker.py
@@ -14,7 +14,7 @@
 from os import getenv
 from os import X_OK
 
-jar_file = 'PeptideShaker-2.2.25.jar'
+jar_file = 'PeptideShaker-3.0.6.jar'
 
 
 default_jvm_mem_opts = ['-Xms2g', '-Xmx4g']
diff --git a/recipes/percolator/build.sh b/recipes/percolator/build.sh
index cd53d08f3084b..5dc597f961637 100644
--- a/recipes/percolator/build.sh
+++ b/recipes/percolator/build.sh
@@ -1,20 +1,30 @@
 #!/bin/bash
 
-mkdir percobuild && cd percobuild
-cmake -DTARGET_ARCH=x86_64 -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=$PREFIX -DXML_SUPPORT=ON -DCMAKE_PREFIX_PATH="$PREFIX;$PREFIX/lib" -DCMAKE_CXX_FLAGS="-std=c++14" $SRC_DIR
-make && make install
-cd ..
+export INCLUDES="-I{PREFIX}/include"
+export LIBPATH="-L${PREFIX}/lib"
+export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
+
+cmake -S . -B percobuild \
+	-DTARGET_ARCH=x86_64 -DCMAKE_BUILD_TYPE=Release \
+	-DCMAKE_INSTALL_PREFIX="$PREFIX" -DXML_SUPPORT=ON \
+	-DCMAKE_PREFIX_PATH="$PREFIX;$PREFIX/lib" -DCMAKE_CXX_COMPILER="${CXX}" \
+	-DCMAKE_CXX_FLAGS="-std=c++14 -O3 -I{PREFIX}/include"
+cmake --build percobuild/ --target install -j ${CPU_COUNT} -v
 
 # First make sure we dont get problems with truncated PREFIX due to null terminators:
 # see percolator/percolator#251 and conda/conda-build#1674
-sed -i '54s/WRITABLE_DIR/std::string(WRITABLE_DIR).c_str()/' $SRC_DIR/src/Globals.cpp
-mkdir converterbuild && cd converterbuild 
-cmake -DTARGET_ARCH=x86_64 -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX="$PREFIX" -DBOOST_ROOT=$PREFIX -DBOOST_LIBRARYDIR=$PREFIX/lib -DSERIALIZE="Boost" -DCMAKE_CXX_FLAGS="-std=c++11" -DCMAKE_PREFIX_PATH="$PREFIX" $SRC_DIR/src/converters
-make install
-cd ..
+sed -i.bak '54s/WRITABLE_DIR/std::string(WRITABLE_DIR).c_str()/' $SRC_DIR/src/Globals.cpp
+ 
+cmake -S ${SRC_DIR}/src/converters -B converterbuild \
+	-DTARGET_ARCH=x86_64 -DCMAKE_BUILD_TYPE=Release \
+	-DCMAKE_INSTALL_PREFIX="$PREFIX" -DBOOST_ROOT="$PREFIX" \
+	-DBOOST_LIBRARYDIR="$PREFIX/lib" -DSERIALIZE="Boost" \
+	-DCMAKE_CXX_FLAGS="-std=c++11 -O3 -I{PREFIX}/include" \
+	-DCMAKE_PREFIX_PATH="$PREFIX" -DCMAKE_CXX_COMPILER="${CXX}"
+cmake --build converterbuild/ --target install -j ${CPU_COUNT} -v
 
-mkdir $PREFIX/testdata
-cp $SRC_DIR/src/converters/data/converters/sqt2pin/target.sqt $PREFIX/testdata/target.sqt
-cp $SRC_DIR/src/converters/data/converters/msgf2pin/target.mzid $PREFIX/testdata/target.mzid
-cp $SRC_DIR/src/converters/data/converters/tandem2pin/target.t.xml $PREFIX/testdata/target.t.xml
-cp $SRC_DIR/data/percolator/tab/percolatorTab $PREFIX/testdata/percolatorTab
+mkdir -p $PREFIX/testdata
+cp -f $SRC_DIR/src/converters/data/converters/sqt2pin/target.sqt $PREFIX/testdata/target.sqt
+cp -f $SRC_DIR/src/converters/data/converters/msgf2pin/target.mzid $PREFIX/testdata/target.mzid
+cp -f $SRC_DIR/src/converters/data/converters/tandem2pin/target.t.xml $PREFIX/testdata/target.t.xml
+cp -f $SRC_DIR/data/percolator/tab/percolatorTab $PREFIX/testdata/percolatorTab
diff --git a/recipes/percolator/meta.yaml b/recipes/percolator/meta.yaml
index 20731e041f8b0..c3a9540cf1790 100644
--- a/recipes/percolator/meta.yaml
+++ b/recipes/percolator/meta.yaml
@@ -1,17 +1,19 @@
 {% set name = "percolator" %}
-{% set version = "3.5" %}
+{% set version = "3.6.5" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://github.com/percolator/percolator/archive/rel-3-05.tar.gz
-  sha256: 5b746bdc0119a40f96bc090e02e27670f91eeb341736911750b170da7e5c06bb
+  url: https://github.com/percolator/percolator/archive/refs/tags/rel-3-06-05.tar.gz
+  sha256: e386998046f59c34be01b1b0347709751d92f3a98e9a0079f8e7c5af5e2dcc8f
 
 build:
-  number: 2
-  skip: True # [osx]
+  number: 0
+  skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage('percolator', max_pin="x") }}
 
 requirements:
   build:
@@ -19,7 +21,7 @@ requirements:
     - {{ compiler('cxx') }}
     - cmake
   host:
-    - boost
+    - boost-cpp 1.71  # last version to have static libs
     - sqlite
     - bzip2
     - xerces-c
@@ -38,13 +40,17 @@ test:
 
 about:
   home: https://github.com/percolator/percolator
-  license: Apache 2.0
+  license: Apache-2.0
+  license_family: APACHE
   license_file: license.txt
   summary: Semi-supervised learning for peptide identification from shotgun proteomics datasets
+  dev_url: https://github.com/percolator/percolator
+  doc_url: http://percolator.ms/
 
 extra:
   container:
-    extended-base: true  # Add UTF-8 for percolator converters
+    extended-base: True  # Add UTF-8 for percolator converters
   identifiers:
     - biotools:Percolator
     - doi:10.1007/s13361-016-1460-7
+    - usegalaxy-eu:percolator
diff --git a/recipes/perl-algorithm-cluster/meta.yaml b/recipes/perl-algorithm-cluster/meta.yaml
index 67a3e26b0738d..b774eb2cfaf6f 100644
--- a/recipes/perl-algorithm-cluster/meta.yaml
+++ b/recipes/perl-algorithm-cluster/meta.yaml
@@ -10,7 +10,9 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 3
+  number: 4
+  run_exports:
+    - {{ pin_subpackage('perl-algorithm-cluster', max_pin="x") }}
 
 requirements:
   build:
@@ -34,3 +36,6 @@ about:
   license: unknown
   summary: 'Perl interface to the C Clustering Library'
 
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/taxonomy/LICENSE b/recipes/perl-bio-kmer/LICENSE
similarity index 97%
rename from recipes/taxonomy/LICENSE
rename to recipes/perl-bio-kmer/LICENSE
index 2cdd581feedab..85d11a5a1ccef 100644
--- a/recipes/taxonomy/LICENSE
+++ b/recipes/perl-bio-kmer/LICENSE
@@ -1,6 +1,6 @@
 MIT License
 
-Copyright (c) 2019 One Codex
+Copyright (c) 2017 Lee Katz
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal
diff --git a/recipes/perl-bio-kmer/meta.yaml b/recipes/perl-bio-kmer/meta.yaml
new file mode 100644
index 0000000000000..d894930b001b2
--- /dev/null
+++ b/recipes/perl-bio-kmer/meta.yaml
@@ -0,0 +1,58 @@
+{% set version = "0.55" %}
+{% set sha256 = "268745e0e4e20aad6462c3dd0958ac6a08b3b7eb43c0f326f9bb61e48f6547a0" %}
+
+# regex to use for Windows build hack
+{% set win_patch = "s|C:\\\\strawberry\\\\c|$ENV{LIBRARY_PREFIX}\\\\mingw-w64|g" %}
+
+package:
+  name: perl-bio-kmer
+  version: {{ version }}
+
+source:
+  url: https://cpan.metacpan.org/authors/id/L/LS/LSKATZ/Bio-Kmer-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  run_exports: 
+    - {{ pin_subpackage("perl-bio-kmer", max_pin="x.x") }}
+  # needed for linker to find some m2w64 libs
+  merge_build_host: True  # [win]
+  script:
+    - >-
+      perl Makefile.PL INSTALLDIRS=vendor NO_PERLLOCAL=1 NO_PACKLIST=1 MAKE=make
+      && (for /r . %%f in (*Makefile) do perl -i -pe "{{ win_patch }}" %%f)  # [win]
+      && make
+      && make test
+      && make install VERBINST=1
+
+requirements:
+  build:
+    - {{ compiler('c') }}  # [unix]
+    - m2w64-gcc  # [win]
+    - make
+  host:
+    - perl >=5.26
+    - perl-file-which
+    - perl-bioperl
+    - kmer-jellyfish >=2
+  run:
+    - perl >=5.26
+    - perl-file-which
+    - perl-bioperl
+    - kmer-jellyfish >=2
+
+test:
+  imports:
+    - Bio::Kmer
+
+about:
+  home: https://metacpan.org/pod/Bio::Kmer
+  summary: A perl module for helping with kmer analysis.
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - lskatz
+   #- conda-forge/perl-packagers
diff --git a/recipes/perl-biox-seq/meta.yaml b/recipes/perl-biox-seq/meta.yaml
index dfa35af99791b..3f0b26b9a0481 100644
--- a/recipes/perl-biox-seq/meta.yaml
+++ b/recipes/perl-biox-seq/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "perl-biox-seq" %}
-{% set version = "0.008007" %}
-{% set sha256 = "e1f75a732d34852b456f824b4f2381056aef36a47106c57429b971d3e1c0ac7f" %}
+{% set version = "0.008009" %}
+{% set sha256 = "93d45421823619317aed195f7f19c486358248d8fe79d3dea7bd91b1fc49e8f5" %}
 
 package:
   name: {{ name }}
@@ -13,6 +13,8 @@ source:
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/perl-compress-bgzf/0.005/build.sh b/recipes/perl-compress-bgzf/0.005/build.sh
deleted file mode 100644
index 34660971a24c8..0000000000000
--- a/recipes/perl-compress-bgzf/0.005/build.sh
+++ /dev/null
@@ -1,21 +0,0 @@
-#!/bin/bash
-
-# If it has Build.PL use that, otherwise use Makefile.PL
-if [ -f Build.PL ]; then
-    perl Build.PL
-    perl ./Build
-    perl ./Build test
-    # Make sure this goes in site
-    perl ./Build install --installdirs site
-elif [ -f Makefile.PL ]; then
-    # Make sure this goes in site
-    perl Makefile.PL INSTALLDIRS=site
-    make
-    make test
-    make install
-else
-    echo 'Unable to find Build.PL or Makefile.PL. You need to modify build.sh.'
-    exit 1
-fi
-# Workaround https://github.com/conda/conda-build/issues/2824
-chmod u+w $PREFIX/bin/bgzip.pl
diff --git a/recipes/perl-compress-bgzf/0.005/meta.yaml b/recipes/perl-compress-bgzf/0.005/meta.yaml
deleted file mode 100644
index f1cc877c3f17f..0000000000000
--- a/recipes/perl-compress-bgzf/0.005/meta.yaml
+++ /dev/null
@@ -1,37 +0,0 @@
-{% set name = "perl-compress-bgzf" %}
-{% set version = "0.005" %}
-{% set sha256 = "1b40284f2ca965ee20ea91707c41005f978127a9bf358a233f637b286adf1f3f" %}
-
-package:
-  name: {{ name }}
-  version: {{ version }}
-
-source:
-  url: https://cpan.metacpan.org/authors/id/V/VO/VOLKENING/Compress-BGZF-0.005.tar.gz
-  sha256: {{ sha256 }}
-
-build:
-  noarch: generic
-  number: 1
-
-requirements:
-  build:
-    - make
-  host:
-    - perl
-    - perl-extutils-makemaker
-    - perl-test-more
-
-  run:
-    - perl
-
-test:
-  imports:
-    - Compress::BGZF
-    - Compress::BGZF::Reader
-    - Compress::BGZF::Writer
-
-about:
-  home: http://metacpan.org/pod/Compress::BGZF
-  license: gpl_3
-  summary: 'Read/write blocked GZIP (BGZF) files'
diff --git a/recipes/perl-digest-sha1/meta.yaml b/recipes/perl-digest-sha1/meta.yaml
index ecd9d4fc4b247..26ad2a3951131 100644
--- a/recipes/perl-digest-sha1/meta.yaml
+++ b/recipes/perl-digest-sha1/meta.yaml
@@ -11,7 +11,9 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 5
+  number: 6
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   build:
@@ -33,3 +35,7 @@ about:
   home: http://metacpan.org/pod/Digest::SHA1
   license: perl_5
   summary: 'Perl interface to the SHA-1 algorithm'
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/perl-fastx-reader/meta.yaml b/recipes/perl-fastx-reader/meta.yaml
index 27f742996a0c3..e41d06d445cae 100644
--- a/recipes/perl-fastx-reader/meta.yaml
+++ b/recipes/perl-fastx-reader/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "perl-fastx-reader" %}
-{% set version = "1.10.0" %}
-{% set sha256 = "2a352e0517987905ee8ca0a596b709906c8bc17ac5674d738dd83b6f838f4df6" %}
+{% set version = "1.12.0" %}
+{% set sha256 = "cfae1cb3912794ea07cf4193c55bb4dd53a30ea975e443e1c9a4076a96eac52c" %}
 
 package:
   name: {{ name }}
@@ -13,6 +13,8 @@ source:
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   build:
diff --git a/recipes/perl-json-validator/build.sh b/recipes/perl-json-validator/build.sh
new file mode 100644
index 0000000000000..bcbf7c6af3535
--- /dev/null
+++ b/recipes/perl-json-validator/build.sh
@@ -0,0 +1,9 @@
+#!/bin/bash
+
+set -o errexit -o pipefail
+
+perl Makefile.PL INSTALLDIRS=site \
+    INC="-I${PREFIX}/include" LIBS="-L${PREFIX}/lib -lz"
+make
+make test
+make install
\ No newline at end of file
diff --git a/recipes/perl-json-validator/meta.yaml b/recipes/perl-json-validator/meta.yaml
new file mode 100644
index 0000000000000..00b5e8f747ebc
--- /dev/null
+++ b/recipes/perl-json-validator/meta.yaml
@@ -0,0 +1,61 @@
+{% set name = "perl-json-validator" %}
+{% set version = "5.14" %}
+{% set sha256 = "6084a5d4075e421a938ffb2ee97b8504faa35e866d0f7b5b581113af5ee28e1b" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://cpan.metacpan.org/authors/id/J/JH/JHTHORSEN/JSON-Validator-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  run_exports:
+    weak:
+      - {{ name }} ={{ version }}
+  noarch: generic
+
+requirements:
+  host:
+    - perl =>5.32
+    - perl-mojolicious
+    - perl-yaml-pp
+    - perl-test-deep
+    - perl-yaml-libyaml
+    - make  # [not win]
+    - m2-make  # [win]
+
+  run:
+    - perl =>5.32
+    - perl-mojolicious
+    - perl-yaml-pp
+
+test:
+  imports:
+    - JSON::Validator
+    - JSON::Validator::Error
+    - JSON::Validator::Formats
+    - JSON::Validator::Joi
+    - JSON::Validator::Schema
+    - JSON::Validator::Schema::Draft201909
+    - JSON::Validator::Schema::Draft4
+    - JSON::Validator::Schema::Draft6
+    - JSON::Validator::Schema::Draft7
+    - JSON::Validator::Schema::OpenAPIv2
+    - JSON::Validator::Schema::OpenAPIv3
+    - JSON::Validator::Store
+    - JSON::Validator::URI
+    - JSON::Validator::Util
+
+
+
+about:
+  home: https://github.com/jhthorsen/json-validator
+  license: artistic_2
+  summary: 'Validate data against a JSON schema'
+
+extra:
+  recipe-maintainers:
+    - khaled196
diff --git a/recipes/perl-math-bigint/meta.yaml b/recipes/perl-math-bigint/meta.yaml
index 22e435d29d7ec..21a8bcd9ebc6b 100644
--- a/recipes/perl-math-bigint/meta.yaml
+++ b/recipes/perl-math-bigint/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "perl-math-bigint" %}
-{% set version = "1.999839" %}
-{% set sha256 = "5062ba5c5efb17cbe7409ae8922cc46ff84fbaf1d741af9738723ba4bc6ebd61" %}
+{% set version = "2.003003" %}
+{% set sha256 = "f24804a58265b7b3d00dc3f71dc575aebcf9e0230a291028b65e7a2c41abcb1c" %}
 
 package:
   name: {{ name }}
@@ -13,6 +13,9 @@ source:
 build:
   noarch: generic
   number: 0
+  run_exports:
+    weak:
+      - {{ name }} ={{ version }}
 
 requirements:
   build:
diff --git a/recipes/perl-metabolomics-fragment-annotation/meta.yaml b/recipes/perl-metabolomics-fragment-annotation/meta.yaml
index df8afb0df41a4..ec913d82183e5 100644
--- a/recipes/perl-metabolomics-fragment-annotation/meta.yaml
+++ b/recipes/perl-metabolomics-fragment-annotation/meta.yaml
@@ -1,33 +1,56 @@
+{% set name = "perl-metabolomics-fragment-annotation" %}
+{% set version = "0.6.9" %}
+{% set sha256 = "6abbb01d252df760004f0869d8a065c1402410bc4f8daaa4309c9ca74c710e0b" %}
+
+
 package:
-  name: perl-metabolomics-fragment-annotation
-  version: "0.6.3"
+  name: {{ name }}
+  version: {{ version }}
 
 source:
-  url: https://cpan.metacpan.org/authors/id/G/GI/GIACOMONI/Metabolomics-Fragment-Annotation-0.6.3.tar.gz
-  sha256: 9689922ed34f11e7286271ae8bf1472e848a5033271db6f0ef393cf5d0826916
+  url: https://cpan.metacpan.org/authors/id/G/GI/GIACOMONI/Metabolomics-Fragment-Annotation-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
 
 build:
-  number: 2
+  number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('perl-metabolomics-fragment-annotation', max_pin="x.x") }}
 
 requirements:
   build:
     - make
   host:
     - perl
+    - perl-class-accessor
+    - perl-uri-query
     - perl-file-share
     - perl-text-csv
     - perl-text-csv_xs
     - perl-xml-twig
     - perl-file-sharedir-install
+    - perl-json
+    - perl-html-template
+    - perl-uri
+    - perl-log-any
+    - perl-datetime
+    - perl-lwp-protocol-https
 
   run:
     - perl
+    - perl-class-accessor
+    - perl-uri-query
     - perl-file-share
     - perl-text-csv
     - perl-text-csv_xs
     - perl-xml-twig
     - perl-file-sharedir-install
+    - perl-json
+    - perl-html-template
+    - perl-uri
+    - perl-log-any
+    - perl-datetime
+    - perl-lwp-protocol-https
 
 test:
   # Perl 'use' tests
diff --git a/recipes/perl-minion-backend-sqlite/build.sh b/recipes/perl-minion-backend-sqlite/build.sh
new file mode 100644
index 0000000000000..cd6fda88871b1
--- /dev/null
+++ b/recipes/perl-minion-backend-sqlite/build.sh
@@ -0,0 +1,17 @@
+#!/bin/bash
+
+set -o errexit -o pipefail
+
+
+sed -i 's/v5.0.7/5.0.7/g' $SRC_DIR/META.json
+sed -i 's/v5.0.7/5.0.7/g' $SRC_DIR/Build.PL
+sed -i 's/v5.0.7/5.0.7/g' $SRC_DIR/lib/Minion/Backend/SQLite.pm
+
+
+perl Build.PL INSTALLDIRS=site \
+    INC="-I${PREFIX}/include" LIBS="-L${PREFIX}/lib -lz"
+sed -i 's/v5.0.7/5.0.7/g' $SRC_DIR/Build
+perl ./Build
+perl ./Build test
+# Make sure this goes in site
+perl ./Build install --installdirs site
diff --git a/recipes/perl-minion-backend-sqlite/meta.yaml b/recipes/perl-minion-backend-sqlite/meta.yaml
new file mode 100644
index 0000000000000..e5085afe4fcc4
--- /dev/null
+++ b/recipes/perl-minion-backend-sqlite/meta.yaml
@@ -0,0 +1,51 @@
+{% set name = "perl-minion-backend-sqlite" %}
+{% set version = "5.0.7" %}
+{% set sha256 = "d7246ff3e2b7d5ee02c270711a4bc735e4e99f3a59f0dcd5741d34429d180c44" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/Grinnz/Minion-Backend-SQLite/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  run_exports:
+    weak:
+      - {{ name }} ={{ version }}
+  noarch: generic
+
+requirements:
+  host:
+    - perl =>5.32
+    - perl-module-build-tiny
+    - perl-mojo-sqlite
+    - perl-minion
+    - perl-mojolicious
+    - perl-dbi
+    - perl-dbd-sqlite
+    - make
+
+  run:
+    - perl =>5.32
+    - perl-dbi
+    - perl-dbd-sqlite
+    - perl-mojolicious
+    - perl-minion
+    - perl-mojo-sqlite
+
+test:
+  imports:
+    - Minion::Backend::SQLite
+
+
+about:
+  home: https://github.com/Grinnz/Minion-Backend-SQLite
+  license: Artistic-2.0
+  summary: 'SQLite backend for Minion job queue'
+
+extra:
+  recipe-maintainers:
+    - khaled196
diff --git a/recipes/perl-minion/build.sh b/recipes/perl-minion/build.sh
new file mode 100644
index 0000000000000..e4b47e8c815ab
--- /dev/null
+++ b/recipes/perl-minion/build.sh
@@ -0,0 +1,10 @@
+#!/bin/bash
+
+set -o errexit -o pipefail
+
+
+perl Makefile.PL INSTALLDIRS=site \
+    INC="-I${PREFIX}/include" LIBS="-L${PREFIX}/lib -lz"
+make
+make test
+make install
diff --git a/recipes/perl-minion/meta.yaml b/recipes/perl-minion/meta.yaml
new file mode 100644
index 0000000000000..450b3bb30e26a
--- /dev/null
+++ b/recipes/perl-minion/meta.yaml
@@ -0,0 +1,56 @@
+{% set name = "perl-minion" %}
+{% set version = "10.29" %}
+{% set sha256 = "a8cbe9eedc9481e50a82652f8c070ca2a0e366077139c9fa809aa3be6c36bf88" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://cpan.metacpan.org/authors/id/S/SR/SRI/Minion-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+
+build:
+  number: 0
+  run_exports:
+    weak:
+      - {{ name }} ={{ version }}
+  noarch: generic
+
+requirements:
+  host:
+    - perl =>5.32
+    - perl-mojolicious
+    - perl-yaml-libyaml
+    - perl-mojo-pg
+    - make
+
+  run:
+    - perl =>5.32
+    - perl-yaml-libyaml
+    - perl-mojolicious
+    - perl-mojo-pg
+
+test:
+  imports:
+    - Minion
+    - Minion::Backend
+    - Minion::Backend::Pg
+    - Minion::Command::minion
+    - Minion::Command::minion::job
+    - Minion::Command::minion::worker
+    - Minion::Iterator
+    - Minion::Job
+    - Minion::Worker
+
+
+
+about:
+  home: https://mojolicious.org
+  license: Artistic-2.0
+  summary: 'Job queue'
+
+extra:
+  recipe-maintainers:
+    - khaled196
diff --git a/recipes/perl-module-scandeps/meta.yaml b/recipes/perl-module-scandeps/meta.yaml
index 98f2e51bb16d0..caf0855bdcf4f 100644
--- a/recipes/perl-module-scandeps/meta.yaml
+++ b/recipes/perl-module-scandeps/meta.yaml
@@ -1,13 +1,13 @@
 {% set name = "perl-module-scandeps" %}
-{% set version = "1.32" %}
-{% set sha256 = "7ab3556ccaa812298da33f0a0515037cd513b9e72c42a76d2c2e4d28832215f0" %}
+{% set version = "1.33" %}
+{% set sha256 = "55bde24e3b966ebe261e10bdc6720259d331e63a4d2fc086ce551987a5bbbb4c" %}
 
 package:
   name: {{ name }}
   version: {{ version }}
 
 source:
-  url: https://cpan.metacpan.org/authors/id/R/RS/RSCHUPP/Module-ScanDeps-1.32.tar.gz
+  url: https://cpan.metacpan.org/authors/id/R/RS/RSCHUPP/Module-ScanDeps-1.33.tar.gz
   sha256: {{ sha256 }}
 
 build:
diff --git a/recipes/perl-mojo-pg/build.sh b/recipes/perl-mojo-pg/build.sh
new file mode 100644
index 0000000000000..bac99b015340c
--- /dev/null
+++ b/recipes/perl-mojo-pg/build.sh
@@ -0,0 +1,9 @@
+#!/bin/bash
+
+set -o errexit -o pipefail
+
+perl Makefile.PL INSTALLDIRS=site \
+    INC="-I${PREFIX}/include" LIBS="-L${PREFIX}/lib -lz"
+make
+make test
+make install
diff --git a/recipes/perl-mojo-pg/meta.yaml b/recipes/perl-mojo-pg/meta.yaml
new file mode 100644
index 0000000000000..6b9567b7d70cd
--- /dev/null
+++ b/recipes/perl-mojo-pg/meta.yaml
@@ -0,0 +1,56 @@
+{% set name = "perl-mojo-pg" %}
+{% set version = "4.27" %}
+{% set sha256 = "a322c8df00e3e5655fdf4d0b7ab9d799289320e29f64fe99ac7af124484ef9d8" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://cpan.metacpan.org/authors/id/S/SR/SRI/Mojo-Pg-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+
+build:
+  number: 0
+  run_exports:
+    weak:
+      - {{ name }} ={{ version }}
+  noarch: generic
+
+requirements:
+  host:
+    - perl =>5.32
+    - perl-dbd-pg
+    - perl-mojolicious
+    - perl-sql-statement
+    - perl-sql-abstract-pg
+    - make
+
+  run:
+    - perl =>5.32
+    - perl-sql-statement
+    - perl-dbd-pg
+    - perl-sql-abstract-pg
+    - perl-mojolicious
+
+test:
+  # Perl 'use' tests
+  imports:
+    - Mojo::Pg
+    - Mojo::Pg::Database
+    - Mojo::Pg::Migrations
+    - Mojo::Pg::PubSub
+    - Mojo::Pg::Results
+    - Mojo::Pg::Transaction
+
+
+
+about:
+  home: https://mojolicious.org
+  license: Artistic-2.0
+  summary: 'Mojolicious PostgreSQL'
+
+extra:
+  recipe-maintainers:
+    - khaled196
diff --git a/recipes/perl-mojo-sqlite/build.sh b/recipes/perl-mojo-sqlite/build.sh
new file mode 100644
index 0000000000000..f340e79a40ffe
--- /dev/null
+++ b/recipes/perl-mojo-sqlite/build.sh
@@ -0,0 +1,9 @@
+#!/bin/bash
+
+set -o errexit -o pipefail
+
+perl Build.PL INSTALLDIRS=site \
+    INC="-I${PREFIX}/include" LIBS="-L${PREFIX}/lib -lz"
+perl ./Build
+perl ./Build test
+perl ./Build install --installdirs site
diff --git a/recipes/perl-mojo-sqlite/meta.yaml b/recipes/perl-mojo-sqlite/meta.yaml
new file mode 100644
index 0000000000000..ff48cb447bcda
--- /dev/null
+++ b/recipes/perl-mojo-sqlite/meta.yaml
@@ -0,0 +1,61 @@
+{% set name = "perl-mojo-sqlite" %}
+{% set version = "3.009" %}
+{% set sha256 = "5739a9af3fc0fc162b38032df610a070035263bfbe0bec16aec52f0dddd7b647" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://cpan.metacpan.org/authors/id/D/DB/DBOOK/Mojo-SQLite-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+
+build:
+  number: 0
+  run_exports:
+    weak:
+      - {{ name }} ={{ version }}
+  noarch: generic
+
+requirements:
+  host:
+    - perl =>5.32
+    - perl-mojolicious
+    - perl-sql-abstract-pg
+    - perl-uri
+    - perl-dbi
+    - perl-module-build-tiny
+    - perl-uri-db
+    - perl-dbd-sqlite
+    - make
+
+  run:
+    - perl =>5.32
+    - perl-mojolicious
+    - perl-sql-abstract-pg
+    - perl-uri
+    - perl-dbi
+    - perl-dbd-sqlite
+    - perl-uri-db
+
+test:
+  # Perl 'use' tests
+  imports:
+    - Mojo::SQLite
+    - Mojo::SQLite::Database
+    - Mojo::SQLite::Migrations
+    - Mojo::SQLite::PubSub
+    - Mojo::SQLite::Results
+    - Mojo::SQLite::Transaction
+
+
+
+about:
+  home: https://github.com/Grinnz/Mojo-SQLite
+  license: Artistic-2.0
+  summary: 'A tiny Mojolicious wrapper for SQLite'
+
+extra:
+  recipe-maintainers:
+    - khaled196
diff --git a/recipes/perl-ms/meta.yaml b/recipes/perl-ms/meta.yaml
index 818495bdd9743..8a00985087dc2 100644
--- a/recipes/perl-ms/meta.yaml
+++ b/recipes/perl-ms/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "perl-ms" %}
-{% set version = "0.207002" %}
-{% set sha256 = "86676202c44908eee77a7697a8ec73908707f3e5b68ba74932a375196850f1ad" %}
+{% set version = "0.207003" %}
+{% set sha256 = "29f1eb57200286c9e95b7f7251a3a3c7db9caf63eccdc7450467d8b77362c797" %}
 
 package:
   name: {{ name }}
@@ -15,6 +15,8 @@ source:
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   host:
@@ -90,6 +92,6 @@ test:
 
 about:
   home: http://metacpan.org/pod/MS
-  license: gpl_3
+  license: GPL-3.0-or-later
   license_file: LICENSE
   summary: 'Namespace for mass spectrometry-related libraries'
diff --git a/recipes/perl-number-format/build.sh b/recipes/perl-number-format/build.sh
deleted file mode 100644
index 67918fe672fe6..0000000000000
--- a/recipes/perl-number-format/build.sh
+++ /dev/null
@@ -1,19 +0,0 @@
-#!/bin/bash
-
-# If it has Build.PL use that, otherwise use Makefile.PL
-if [ -f Build.PL ]; then
-    perl Build.PL
-    perl ./Build
-    perl ./Build test
-    # Make sure this goes in site
-    perl ./Build install --installdirs site
-elif [ -f Makefile.PL ]; then
-    # Make sure this goes in site
-    perl Makefile.PL INSTALLDIRS=site
-    make
-    make test
-    make install
-else
-    echo 'Unable to find Build.PL or Makefile.PL. You need to modify build.sh.'
-    exit 1
-fi
diff --git a/recipes/perl-number-format/meta.yaml b/recipes/perl-number-format/meta.yaml
deleted file mode 100644
index 2930befeb4fea..0000000000000
--- a/recipes/perl-number-format/meta.yaml
+++ /dev/null
@@ -1,36 +0,0 @@
-{% set name = "perl-number-format" %}
-{% set version = "1.76" %}
-{% set sha256 = "0e0060eb363635a885706c6a26f5fcaafeae759f7b2acae49dda70e195dd44d6" %}
-
-package:
-  name: {{ name }}
-  version: {{ version }}
-
-source:
-  url: https://cpan.metacpan.org/authors/id/R/RJ/RJBS/Number-Format-1.76.tar.gz
-  sha256: {{ sha256 }}
-
-build:
-  noarch: generic
-  number: 0
-
-requirements:
-  build:
-    - make
-  host:
-    - perl
-    - perl-carp
-    - perl-extutils-makemaker
-
-  run:
-    - perl
-    - perl-carp
-
-test:
-  imports:
-    - Number::Format
-
-about:
-  home: http://metacpan.org/pod/Number::Format
-  license: perl_5
-  summary: 'Perl extension for formatting numbers'
diff --git a/recipes/perl-parallel-loops/meta.yaml b/recipes/perl-parallel-loops/meta.yaml
index 99eb9562f6bb9..d87e272c6e1db 100644
--- a/recipes/perl-parallel-loops/meta.yaml
+++ b/recipes/perl-parallel-loops/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "perl-parallel-loops" %}
-{% set version = "0.10" %}
-{% set sha256 = "6f967b46e7a363b16871b9991c359e142dc3b2281cfe9b1af39904704c8bd2aa" %}
+{% set version = "0.12" %}
+{% set sha256 = "b66c8fe2fd519873c8a7b6ad1d1a04df2026912259b5e28a41e51d9c9b154150" %}
 
 package:
   name: {{ name }}
@@ -12,7 +12,11 @@ source:
 
 build:
   noarch: generic
-  number: 1
+  number: 0
+  run_exports:
+    weak:
+      - {{ name }} ={{ version }}
+
 
 requirements:
   build:
diff --git a/recipes/perl-retroseq/meta.yaml b/recipes/perl-retroseq/meta.yaml
index be3fa8654f403..12628a099a06f 100644
--- a/recipes/perl-retroseq/meta.yaml
+++ b/recipes/perl-retroseq/meta.yaml
@@ -11,21 +11,28 @@ source:
 
 build:
   noarch: generic
-  number: 0
+  number: 2
+  run_exports: {{ pin_subpackage("perl-retroseq", max_pin="x") }}
 
 requirements:
-  build:
+  host:
     - perl
     - perl-carp
     - perl-exporter
     - perl-extutils-makemaker
+    - zlib
+    - ncurses
+    - samtools ==0.1.19
 
   run:
     - perl
     - perl-carp
-    - samtools
-    - exonerate
+    - samtools ==0.1.19
+    - exonerate ==2.2.0
+    - bcftools
     - bedtools
+    - zlib
+    - ncurses
 
 test:
   imports:
diff --git a/recipes/perl-sql-abstract-pg/build.sh b/recipes/perl-sql-abstract-pg/build.sh
new file mode 100644
index 0000000000000..e4b47e8c815ab
--- /dev/null
+++ b/recipes/perl-sql-abstract-pg/build.sh
@@ -0,0 +1,10 @@
+#!/bin/bash
+
+set -o errexit -o pipefail
+
+
+perl Makefile.PL INSTALLDIRS=site \
+    INC="-I${PREFIX}/include" LIBS="-L${PREFIX}/lib -lz"
+make
+make test
+make install
diff --git a/recipes/perl-sql-abstract-pg/meta.yaml b/recipes/perl-sql-abstract-pg/meta.yaml
new file mode 100644
index 0000000000000..d399a1b180753
--- /dev/null
+++ b/recipes/perl-sql-abstract-pg/meta.yaml
@@ -0,0 +1,46 @@
+{% set name = "perl-sql-abstract-pg" %}
+{% set version = "1.0" %}
+{% set sha256 = "3e27360df37b8d88f3c52dac9b03493f9bd3eeff6c8d88f9b086d2711553f547" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://cpan.metacpan.org/authors/id/S/SR/SRI/SQL-Abstract-Pg-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+
+build:
+  number: 0
+  run_exports:
+    weak:
+      - {{ name }} ={{ version }}
+  noarch: generic
+
+requirements:
+  host:
+    - perl =>5.32
+    - perl-sql-abstract
+    - perl-test-deep
+    - make
+
+  run:
+    - perl =>5.32
+    - perl-sql-abstract
+    - perl-test-deep
+
+test:
+  # Perl 'use' tests
+  imports:
+    - SQL::Abstract::Pg
+
+
+about:
+  home: https://mojolicious.org
+  license: Artistic-2.0
+  summary: 'PostgreSQL features for SQL::Abstract'
+
+extra:
+  recipe-maintainers:
+    - khaled196
diff --git a/recipes/perl-sql-abstract/build.sh b/recipes/perl-sql-abstract/build.sh
new file mode 100644
index 0000000000000..34e830ba9fffc
--- /dev/null
+++ b/recipes/perl-sql-abstract/build.sh
@@ -0,0 +1,10 @@
+#!/bin/bash
+
+set -o errexit -o pipefail
+
+
+perl Makefile.PL INSTALLDIRS=site \
+    INC="-I${PREFIX}/include" LIBS="-L${PREFIX}/lib -lz"
+make
+make test
+make install
\ No newline at end of file
diff --git a/recipes/perl-sql-abstract/meta.yaml b/recipes/perl-sql-abstract/meta.yaml
new file mode 100644
index 0000000000000..ca0b79cc569be
--- /dev/null
+++ b/recipes/perl-sql-abstract/meta.yaml
@@ -0,0 +1,73 @@
+{% set name = "perl-sql-abstract" %}
+{% set version = "2.000001" %}
+{% set sha256 = "35a642662c349420d44be6e0ef7d8765ea743eb12ad14399aa3a232bb94e6e9a" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://cpan.metacpan.org/authors/id/M/MS/MSTROUT/SQL-Abstract-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+
+build:
+  number: 0
+  run_exports:
+    weak:
+      - {{ name }} ={{ version }}
+  noarch: generic
+
+requirements:
+  host:
+    - perl =>5.32
+    - perl-hash-merge
+    - perl-mro-compat
+    - perl-sub-quote
+    - perl-test-deep
+    - perl-moo
+    - perl-test-exception
+    - perl-data-dumper
+    - perl-test-warn
+    - perl-data-dumper-concise
+    - make  # [not win]
+    - m2-make  # [win]
+
+  run:
+    - perl =>5.32
+    - perl-test-exception
+    - perl-data-dumper
+    - perl-test-warn
+    - perl-data-dumper-concise
+    - perl-module-runtime
+    - perl-sub-quote
+    - perl-test-deep
+    - perl-mro-compat
+    - perl-moo
+    - perl-hash-merge
+
+test:
+  # Perl 'use' tests
+  imports:
+    - SQL::Abstract
+    - SQL::Abstract::Formatter
+    - SQL::Abstract::Parts
+    - SQL::Abstract::Plugin::BangOverrides
+    - SQL::Abstract::Plugin::ExtraClauses
+    - SQL::Abstract::Reference
+    - SQL::Abstract::Role::Plugin
+    - SQL::Abstract::Test
+    - SQL::Abstract::Tree
+
+
+about:
+  home: http://metacpan.org/pod/SQL-Abstract
+  license: GPL-1.0-or-later OR Artistic-1.0-Perl
+  license_file:
+    - {{ environ["PREFIX"] }}/man/man1/perlartistic.1
+    - {{ environ["PREFIX"] }}/man/man1/perlgpl.1
+  summary: 'Generate SQL from Perl data structures'
+
+extra:
+  recipe-maintainers:
+    - khaled196
diff --git a/recipes/perl-uri-db/build.sh b/recipes/perl-uri-db/build.sh
new file mode 100644
index 0000000000000..f340e79a40ffe
--- /dev/null
+++ b/recipes/perl-uri-db/build.sh
@@ -0,0 +1,9 @@
+#!/bin/bash
+
+set -o errexit -o pipefail
+
+perl Build.PL INSTALLDIRS=site \
+    INC="-I${PREFIX}/include" LIBS="-L${PREFIX}/lib -lz"
+perl ./Build
+perl ./Build test
+perl ./Build install --installdirs site
diff --git a/recipes/perl-uri-db/meta.yaml b/recipes/perl-uri-db/meta.yaml
new file mode 100644
index 0000000000000..db450ccaf3c63
--- /dev/null
+++ b/recipes/perl-uri-db/meta.yaml
@@ -0,0 +1,96 @@
+{% set name = "perl-uri-db" %}
+{% set version = "0.22" %}
+{% set sha256 = "1ff437591022b440716676526cca0a729b465f606bdd9e1d0a60561d6fdd458f" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://cpan.metacpan.org/authors/id/D/DW/DWHEELER/URI-db-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+
+build:
+  number: 0
+  run_exports:
+    weak:
+      - {{ name }} ={{ version }}
+  noarch: generic
+
+requirements:
+  host:
+    - perl =>5.32
+    - perl-uri
+    - perl-module-build
+    - perl-uri-nested
+    - make  # [not win]
+    - m2-make  # [win]
+
+  run:
+    - perl =>5.32
+    - perl-uri
+    - perl-uri-nested
+
+test:
+  # Perl 'use' tests
+  imports:
+    - URI::cassandra
+    - URI::cockroach
+    - URI::cockroachdb
+    - URI::couch
+    - URI::couchdb
+    - URI::cubrid
+    - URI::db
+    - URI::db2
+    - URI::derby
+    - URI::exasol
+    - URI::firebird
+    - URI::hive
+    - URI::impala
+    - URI::informix
+    - URI::ingres
+    - URI::interbase
+    - URI::ldapdb
+    - URI::maria
+    - URI::mariadb
+    - URI::max
+    - URI::maxdb
+    - URI::monet
+    - URI::monetdb
+    - URI::mongo
+    - URI::mongodb
+    - URI::mssql
+    - URI::mysql
+    - URI::oracle
+    - URI::pg
+    - URI::pgsql
+    - URI::pgxc
+    - URI::postgres
+    - URI::postgresql
+    - URI::postgresxc
+    - URI::redshift
+    - URI::snowflake
+    - URI::sqlite
+    - URI::sqlite3
+    - URI::sqlserver
+    - URI::sybase
+    - URI::teradata
+    - URI::unify
+    - URI::vertica
+    - URI::yugabyte
+    - URI::yugabytedb
+
+
+
+about:
+  home: https://search.cpan.org/dist/URI-db/
+  license: GPL-1.0-or-later OR Artistic-1.0-Perl
+  license_file:
+    - {{ environ["PREFIX"] }}/man/man1/perlartistic.1
+    - {{ environ["PREFIX"] }}/man/man1/perlgpl.1
+  summary: 'Database URIs'
+
+extra:
+  recipe-maintainers:
+    - khaled196
diff --git a/recipes/perl-uri-nested/build.sh b/recipes/perl-uri-nested/build.sh
new file mode 100644
index 0000000000000..f340e79a40ffe
--- /dev/null
+++ b/recipes/perl-uri-nested/build.sh
@@ -0,0 +1,9 @@
+#!/bin/bash
+
+set -o errexit -o pipefail
+
+perl Build.PL INSTALLDIRS=site \
+    INC="-I${PREFIX}/include" LIBS="-L${PREFIX}/lib -lz"
+perl ./Build
+perl ./Build test
+perl ./Build install --installdirs site
diff --git a/recipes/perl-uri-nested/meta.yaml b/recipes/perl-uri-nested/meta.yaml
new file mode 100644
index 0000000000000..c2c2f635a429c
--- /dev/null
+++ b/recipes/perl-uri-nested/meta.yaml
@@ -0,0 +1,46 @@
+{% set name = "perl-uri-nested" %}
+{% set version = "0.10" %}
+{% set sha256 = "e1971339a65fbac63ab87142d4b59d3d259d51417753c77cb58ea31a8233efaf" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://cpan.metacpan.org/authors/id/D/DW/DWHEELER/URI-Nested-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+
+build:
+  number: 0
+  run_exports:
+    weak:
+      - {{ name }} ={{ version }}
+  noarch: generic
+
+requirements:
+  host:
+    - perl =>5.32
+    - perl-module-build
+    - perl-uri
+    - make
+
+  run:
+    - perl =>5.32
+    - perl-uri
+
+test:
+  # Perl 'use' tests
+  imports:
+    - URI::Nested
+
+
+
+about:
+  home: https://metacpan.org/release/URI-Nested/
+  license: perl_5
+  summary: 'Nested URIs'
+
+extra:
+  recipe-maintainers:
+    - khaled196
diff --git a/recipes/pgenlib/meta.yaml b/recipes/pgenlib/meta.yaml
new file mode 100644
index 0000000000000..b573cc847787c
--- /dev/null
+++ b/recipes/pgenlib/meta.yaml
@@ -0,0 +1,48 @@
+{% set name = "pgenlib" %}
+{% set version = "0.90.2" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/P/Pgenlib/Pgenlib-{{ version }}.tar.gz"
+  sha256: 09825be43ffb25bc68b6e243b98989a5bc35a8aa22cd749fd9f602d778dd6bd0
+
+build:
+  number: 0
+  script: "{{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation"
+  run_exports:
+    - {{ pin_subpackage('pgenlib', max_pin="x.x") }}
+
+requirements:
+  build:
+    - {{ compiler('cxx') }}
+  host:
+    - python
+    - pip
+    - cython
+    - numpy
+    - zlib
+  run:
+    - python
+    - {{ pin_compatible('numpy') }}
+
+test:
+  imports:
+    - {{ name }}
+
+about:
+  home: "https://github.com/chrchang/plink-ng"
+  license: "LGPL-3.0-or-later"
+  license_family: LGPL
+  license_file: LICENSE
+  summary: "Python wrapper for pgenlib's basic reader and writer."
+  doc_url: "https://github.com/chrchang/plink-ng/blob/master/2.0/Python/README.md"
+  dev_url: "https://github.com/chrchang/plink-ng/tree/master/2.0/Python"
+
+extra:
+  recipe-maintainers:
+    - chrchang
+  identifiers:
+    - doi:10.1186/s13742-015-0047-8
diff --git a/recipes/pggb/build.sh b/recipes/pggb/build.sh
index e4dcc8ffa6c9f..9fd032f7e0aa0 100644
--- a/recipes/pggb/build.sh
+++ b/recipes/pggb/build.sh
@@ -1,9 +1,9 @@
 #!/bin/bash
 
 # Write version in the script
-n=$(grep '$show_version == true' ./pggb -n | cut -f 1 -d :)
+n=$(grep '"$show_version" == true' ./pggb -n | cut -f 1 -d :)
 n=$((n-1))
-sed -i ${n}'a\if [ $show_version == true ]; then echo "pggb '$PKG_VERSION'"; exit; fi' pggb
+sed -i ${n}'a\if [ "$show_version" == true ]; then echo "pggb '$PKG_VERSION'"; exit; fi' ./pggb
 
 mkdir -p $PREFIX/bin
 
diff --git a/recipes/pggb/meta.yaml b/recipes/pggb/meta.yaml
index 620a05e34db1f..23c511a7bad59 100644
--- a/recipes/pggb/meta.yaml
+++ b/recipes/pggb/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pggb" %}
-{% set version = "0.5.4" %}
+{% set version = "0.6.0" %}
 
 package:
   name: "{{ name }}"
@@ -7,28 +7,29 @@ package:
 
 source:
   url: https://github.com/pangenome/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 0f45e710e3a59225ae806db3686ecc32c59859671a8f1b7052259525dc6707f3
+  sha256: e201410e5b7ca7c598267797a7fa30b065a1b2b76ee5c309341a93fc489704f3
 
 build:
   noarch: generic
+  run_exports:
+  - {{ pin_subpackage(name, max_pin='x.x') }}
   number: 0
 
 requirements:
   run:
     - bc
     - tabix
-    - gfaffix ==0.1.4
+    - gfaffix ==0.1.5b
     - gsl 2.7.0 
-    - idna <3,>=2.5
-    - multiqc ==1.14
-    - odgi ==0.8.3
+    - multiqc ==1.19
+    - odgi ==0.8.6
     - pigz
     - bcftools
-    - seqwish ==0.7.9
-    - smoothxg ==0.7.0
+    - seqwish ==0.7.10
+    - smoothxg ==0.7.4
     - time
     - vg 1.40.0
-    - wfmash ==0.10.3
+    - wfmash ==0.13.0
     - python-igraph ==0.10.4
 
 test:
diff --git a/recipes/pgr-tk/build.sh b/recipes/pgr-tk/build.sh
index 7bf1857952b00..c259dc86dbace 100644
--- a/recipes/pgr-tk/build.sh
+++ b/recipes/pgr-tk/build.sh
@@ -1,44 +1,13 @@
-
-git clone https://github.com/cschin/agc.git
-pushd agc
-git checkout 453c0afdc54b4aa00fa8e97a63f196931fdb81c4
-popd
-
-pushd rs-wfa/
-rm -rf WFA
-git clone https://github.com/cschin/WFA.git --depth=1
-pushd WFA
-git checkout 0c6000fc7c4208b048a27569e39904107fadd49d
-popd
-popd
-
-echo $PREFIX
-mkdir -p $BUILD_PREFIX/.cargo
-export CARGO_HOME=$BUILD_PREFIX/.cargo
-
-#rustup default stable
-export LIBCLANG_PATH=$PREFIX/lib/
-
+#!/bin/bash
 ## TODO: using environmental variables in the libwfa makefile in the future. 
 ## The current compiler names are hard-coded in the makefile, so we need these symbolic links
 ln -sf $CC $PREFIX/bin/gcc
 ln -sf $CXX $PREFIX/bin/g++
 export PATH=$PREFIX/bin:$PATH
 
-cargo build -p libwfa --release
-cargo build -p pgr-db --release
-cargo build -p pgr-bin --release
-cargo install maturin --locked
-export PATH=$CARGO_HOME/bin:$PATH
-pushd pgr-tk/
-#maturin build --release
-maturin build --release --skip-auditwheel
-popd
-
-WHLFILE=`find $SRC_DIR/target/wheels/ -name "pgrtk-*-linux_x86_64.whl"`
+cd pgr-tk
+bash build.sh
+$PYTHON -m pip install ../target/wheels/pgrtk-*.whl  --no-deps --ignore-installed --no-cache-dir -vvv
 
-$PYTHON -m pip install $WHLFILE  --no-deps --ignore-installed --no-cache-dir -vvv
-cp $SRC_DIR/target/release/pgr-mdb $PREFIX/bin
 rm $PREFIX/bin/gcc
 rm $PREFIX/bin/g++
-
diff --git a/recipes/pgr-tk/meta.yaml b/recipes/pgr-tk/meta.yaml
index 8767634d6e340..dfdbc57d98738 100644
--- a/recipes/pgr-tk/meta.yaml
+++ b/recipes/pgr-tk/meta.yaml
@@ -1,43 +1,50 @@
-{% set version = "0.3.6" %}
+{% set version = "0.5.1" %}
 
 package:
   name: pgr-tk
   version: {{ version }}
 
 source:
-  url: https://github.com/Sema4-Research/pgr-tk/archive/refs/tags/v{{version}}.tar.gz 
-  sha256: 1237202a721c31c4599d12d8bc4d297192e582fff8496907743f8c79835c3e35 
+  git_url: https://github.com/GeneDx/pgr-tk.git
+  git_tag: v{{ version }}
+  sha256: f7252d6ef3640f28ca8c88cb9e469fad63799e467272dcdba24fa40026635864
 
 build:
-  number: 2
-  skip: True # [osx or py < 38]
+  number: 0
+  skip: True # [osx or py != 38]
+  run_exports:
+    - {{ pin_subpackage('pgr-tk', max_pin='x.x') }}
 
 requirements:
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
+    - {{ compiler('rust') }}
+    - maturin
     - make
-    - cmake
-    - rust >=1.58.0
-
   host:
-    - clangdev
     - python
-
+    - clangdev
   run:
     - python
     - numpy
+    - minimap2
+    - graphviz
+    - samtools
 
 test:
   commands:
     - python -c "import pgrtk; print(pgrtk.__version__)"
 
 about:
-  home: https://github.com/Sema4-Research/pgr-tk
+  home: https://github.com/GeneDx/pgr-tk
   license: CC BY-NC-SA 4.0
   license_family: CC
   license_file: LICENSE
   summary: A PanGenomic Research Took Kit. This repository is a project to provide Python and Rust libraries to facilitate pangenomics analysis.
+
 extra:
   recipe-maintainers:
     - cschin
+  skip-lints:
+    - uses_vcs_url
diff --git a/recipes/phables/meta.yaml b/recipes/phables/meta.yaml
index 88779137b2a92..06e9839de03da 100644
--- a/recipes/phables/meta.yaml
+++ b/recipes/phables/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "phables" %}
-{% set version = "1.1.0" %}
+{% set version = "1.3.2" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,24 +7,30 @@ package:
 
 source:
   url: "https://github.com/Vini2/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz"
-  sha256: 3276a6372e41a679b73d533fcc416a70db39a5e8f1ee78ea9a96590e3acf00de
+  sha256: 79dad165c2ba314c77d0e4b4aca9b5876b6347c362c7f7c6bd2d9c979d3a7f7d
 
 build:
   number: 0
   noarch: python
-  script: "{{ PYTHON }} -m pip install . -vv"
+  entry_points:
+    - phables=phables.__main__:main
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('phables', max_pin="x") }}
 
 requirements:
   host:
-    - python
+    - python >=3.9
     - pip
   run:
-    - python >=3.8,<3.11
-    - snakemake >=7.14.0
+    - python >=3.9
+    - snakemake-minimal >=7.14.0
     - pyyaml >=6.0
     - click >=8.1.3
     - jinja2 >=3.0.2
     - mamba <1.4.2
+    - metasnek >=0.0.5
+    - snaketool-utils >=0.0.3
 
 test:
   commands:
diff --git a/recipes/phanotate/meta.yaml b/recipes/phanotate/meta.yaml
index 00d8dc1cede86..5c4db157f9366 100644
--- a/recipes/phanotate/meta.yaml
+++ b/recipes/phanotate/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "phanotate" %}
-{% set version = "1.5.1" %}
+{% set version = "1.6.5" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: "1c3b241d59b801f9023946ef3ba1090e4fc32a4ff5bd06ba0144320ae9693de6"
+  sha256: "4be12306eeace16d018538499299b1e01f3fc5a904af5836ed0172eacdda3483"
 
 build:
-  number: 1
-  skip: True  # [py27]
-  script: "{{ PYTHON }} -m pip install . --no-deps -vv "
+  number: 0
+  skip: True  # [py < 36]
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('phanotate', max_pin="x") }}
 
 requirements:
   build:
@@ -21,6 +23,7 @@ requirements:
     - pip
     - python
   run:
+    - python
     - fastpath
     - matplotlib-base
     - scipy
@@ -28,8 +31,8 @@ requirements:
     - statsmodels
     - backports.tempfile
     - textwrap3
-    - setuptools
     - trnascan-se
+    - genbank
 
 test:
   commands:
diff --git a/recipes/phantasm-xenogi/meta.yaml b/recipes/phantasm-xenogi/meta.yaml
new file mode 100644
index 0000000000000..5a4b7c0e9f895
--- /dev/null
+++ b/recipes/phantasm-xenogi/meta.yaml
@@ -0,0 +1,43 @@
+{% set name = "xenoGI" %}
+{% set version = "3.1.2" %}
+
+package:
+  name: "phantasm-{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://github.com/dr-joe-wirth/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: ef4254f1dfef45888480aaa2db908d6afff648d446eff29a4f6c2df93e1209f0
+
+build:
+  number: 0
+  noarch: python
+  script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage('phantasm-xenogi', max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.9
+    - pip
+  run:
+    - biopython
+    - blast
+    - fasttree
+    - generax
+    - muscle >=5
+    - numpy
+    - parasail-python
+    - python >=3.9
+    - scipy
+
+test:
+  commands:
+    - touch $PREFIX/tmp.py && xenoGI $PREFIX/tmp.py version
+
+about:
+  home: https://github.com/dr-joe-wirth/{{ name }}
+  license: GPL-3.0
+  license_family: GPL3
+  license_file: LICENSE
+  summary: "xenoGI for PHANTASM"
diff --git a/recipes/phantasm/build.sh b/recipes/phantasm/build.sh
new file mode 100644
index 0000000000000..4eddc5cd3108d
--- /dev/null
+++ b/recipes/phantasm/build.sh
@@ -0,0 +1,100 @@
+#!/bin/bash
+
+# create variables for this build script
+export PYVER=$(python3 --version|sed -E "s/^\S+ ([0-9]+\.[0-9]+)\..+$/\1/g")
+export TEMP_FN=".tmp"
+export BIN_DIR=$PREFIX/bin
+export ACTIVATE_DIR=$PREFIX/etc/conda/activate.d
+export PHANTASM_EXE=$BIN_DIR/phantasm
+export PHANTASM_DIR=$PREFIX/lib/python$PYVER/site-packages/phantasm
+export PARAM_FN=$PHANTASM_DIR/param.py
+
+# move phantasm files to the directory
+mkdir -p $PHANTASM_DIR
+cp -rf ./ $PHANTASM_DIR
+
+# define global variables that point at the executables
+echo "BLASTPLUS_DIR:str = '$BIN_DIR'" > $TEMP_FN
+echo "MUSCLE_EXE:str = '$BIN_DIR/muscle'" >> $TEMP_FN
+echo "FASTTREE_EXE:str = '$BIN_DIR/FastTreeMP'" >> $TEMP_FN
+echo "IQTREE_EXE:str = '$BIN_DIR/iqtree'" >> $TEMP_FN
+
+# define global variables that point at phantasm and xenogi directories
+echo "PHANTASM_DIR:str = '$PHANTASM_DIR'" >> $TEMP_FN
+echo "XENOGI_DIR:str = '$PREFIX/lib/python$PYVER/site-packages/'" >> $TEMP_FN
+
+# add the last five lines of param.py (LPSN csv files)
+tail -n 5 $PARAM_FN >> $TEMP_FN
+
+# overwrite param.py with the new file
+mv $TEMP_FN $PARAM_FN
+
+# modify PHANTASM_PY variable so it prints the correct usage
+sed -E "s/^(PHANTASM_PY = ).+$/\1'phantasm'/g" $PHANTASM_DIR/phantasm.py > $TEMP_FN
+mv $TEMP_FN $PHANTASM_DIR/phantasm.py
+
+# make the phantasm executable
+touch $PHANTASM_EXE
+chmod a+x $PHANTASM_EXE
+
+# make an activate script
+mkdir -p $ACTIVATE_DIR
+
+# export variables for the activate script
+cat <<End > $ACTIVATE_DIR/phantasm.sh
+export BIN_DIR=$BIN_DIR
+export LIB_DIR=$PREFIX/lib/python
+export PHANTASM_EXE=$PHANTASM_EXE
+export BUILD_PYVER=$PYVER
+End
+
+# PYVER and PHANTASM_DIR need to be defined upon activation
+cat <<\End >> $ACTIVATE_DIR/phantasm.sh
+export PYVER=$(python3 --version|sed -E "s/^\S+ ([0-9]+\.[0-9]+)\..+$/\1/g")
+export PHANTASM_DIR=$LIB_DIR$PYVER/site-packages/phantasm
+End
+
+# replace the build pyver with the current pyver
+cat <<\End >> $ACTIVATE_DIR/phantasm.sh
+cat $PHANTASM_DIR/param.py | sed -E "s/python$BUILD_PYVER/python$PYVER/g" > .tmp
+mv .tmp $PHANTASM_DIR/param.py
+End
+
+# start building the python executable
+cat <<End >> $ACTIVATE_DIR/phantasm.sh
+echo "#!/usr/bin/env python3" > $PHANTASM_EXE
+echo "import os, sys, subprocess" >> $PHANTASM_EXE
+End
+
+# $PHANTASM_DIR needs to be evaluated as string literal
+cat <<\End >> $ACTIVATE_DIR/phantasm.sh
+echo "sys.path.append('$PHANTASM_DIR')" >> $PHANTASM_EXE
+End
+
+# continue building python executable
+cat <<End >> $ACTIVATE_DIR/phantasm.sh
+echo "if __name__ == '__main__'": >> $PHANTASM_EXE
+End
+
+# PHANTASM_DIR needs to be evalutated as a string literal
+cat <<\End >> $ACTIVATE_DIR/phantasm.sh
+echo "    cmd = ['python3', os.path.join('$PHANTASM_DIR', 'phantasm.py')]" >> $PHANTASM_EXE
+End
+
+# finish building python executable and unset variables
+cat <<End >> $ACTIVATE_DIR/phantasm.sh
+echo "    cmd.extend(sys.argv[1:])" >> $PHANTASM_EXE
+echo "    try:" >> $PHANTASM_EXE
+echo "        subprocess.run(cmd, check=True)" >> $PHANTASM_EXE
+echo "    except subprocess.CalledProcessError as e:" >> $PHANTASM_EXE
+echo "        raise RuntimeError(e.stderr)" >> $PHANTASM_EXE
+unset BIN_DIR
+unset LIB_DIR
+unset BUILD_PYVER
+unset PYVER
+unset PHANTASM_DIR
+unset PHANTASM_EXE
+End
+
+# make activate script executable
+chmod a+x $ACTIVATE_DIR/phantasm.sh
diff --git a/recipes/phantasm/meta.yaml b/recipes/phantasm/meta.yaml
new file mode 100644
index 0000000000000..eada44f5c7663
--- /dev/null
+++ b/recipes/phantasm/meta.yaml
@@ -0,0 +1,52 @@
+{% set name = "PHANTASM" %}
+{% set version = "1.1.3" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://github.com/dr-joe-wirth/{{ name|lower }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 6aa9e00a325750ba3299ffe61a4937fd5df237d4efa9f2bfd78bc2b2dae31939
+
+build:
+  number: 0
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage('phantasm', max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.9
+    - pip
+  run:
+    - bioconductor-decipher
+    - biopython
+    - blast
+    - fasttree
+    - iqtree >=1.6.12
+    - muscle >=5
+    - numpy
+    - parasail-python
+    - phantasm-xenogi
+    - pyani
+    - python >=3.9
+    - r-ape
+    - r-base
+    - r-dendextend
+    - r-gplots
+    - rpy2
+    - scipy
+    - semver
+    - textdistance
+
+test:
+  commands:
+    - phantasm check
+
+about:
+  home: https://github.com/dr-joe-wirth/{{ name|lower }}
+  license: MIT
+  license_family: GPL3
+  license_file: LICENSE.md
+  summary: "PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes"
diff --git a/recipes/pharokka/build.sh b/recipes/pharokka/build.sh
deleted file mode 100644
index af903c7b63d95..0000000000000
--- a/recipes/pharokka/build.sh
+++ /dev/null
@@ -1,5 +0,0 @@
-#!/bin/sh
-set -e
-
-mkdir -p "${PREFIX}/bin"
-cp -r bin "${PREFIX}"
diff --git a/recipes/pharokka/meta.yaml b/recipes/pharokka/meta.yaml
index 3bc825d5026a5..063f5f8b190f6 100644
--- a/recipes/pharokka/meta.yaml
+++ b/recipes/pharokka/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "1.3.2" %}
+{% set version = "1.7.2" %}
 {% set name = "pharokka" %}
-{% set sha256 = "e12b20beada9c261f51dd37a9aa7afe83291363035dc53478c42fb67882900e1" %}
+{% set sha256 = "2e58e1d15c40d9ac03a0136e1f41ddef0b819e9a8172ee429bdaf5ad1353f78b" %}
 {% set user = "gbouras13" %}
 
 package:
@@ -10,25 +10,41 @@ package:
 build:
   number: 0
   noarch: python
+  script: "{{ PYTHON }} -m pip install . --no-build-isolation --use-pep517 --no-deps -vvv"
+  run_exports:
+    - {{ pin_subpackage('pharokka', max_pin='x') }}
 
 source:
   url: https://github.com/{{ user }}/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
 
 requirements:
- run:
-  - bcbio-gff
-  - biopython >=1.78,<1.81
-  - phanotate >=1.5.0
-  - mmseqs2 ==13.45111
-  - trnascan-se >=2.0.9
-  - minced >=0.4.2
-  - aragorn >=1.2.41
-  - mash >=2.2
-  - pyrodigal >=2.0.1
-  - pycirclize >=0.3.1
-  - curl
-  - tar
+  host:
+    - python >=3.5
+    - pip
+  run:
+    - python >=3.5
+    - bcbio-gff >=0.7.0
+    - biopython >=1.80,<1.82
+    - phanotate >=1.5.0,<1.6.4
+    - mmseqs2 ==13.45111
+    - trnascan-se >=2.0.9
+    - minced >=0.4.2
+    - aragorn >=1.2.41
+    - mash >=2.2
+    - dnaapler >=0.4.0
+    - pyrodigal >=3.1.0
+    - pyrodigal-gv >=0.2.0
+    - pycirclize >=0.3.1
+    - alive-progress >=3.0.1
+    - requests >=2.25.1
+    - pyhmmer >=0.10.0
+    - loguru >=0.5.4
+    - pyyaml >=6.0
+    - black >=22.3.0
+    - isort >=5.10.1
+    - pytest >=6.2.5
+    - pytest-cov >=3.0.0
 
 test:
   commands:
@@ -39,6 +55,7 @@ test:
 about:
   home: https://github.com/gbouras13/pharokka
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary: "Fast Phage Annotation Program"
   dev_url: https://github.com/gbouras13/pharokka
diff --git a/recipes/phava/build.sh b/recipes/phava/build.sh
new file mode 100644
index 0000000000000..2364fa6aad2be
--- /dev/null
+++ b/recipes/phava/build.sh
@@ -0,0 +1,6 @@
+#!/usr/bin/env bash
+
+mkdir -p $PREFIX/bin
+cp bin/phava $PREFIX/bin
+cp -r PhaVa $PREFIX
+cp -r tests $PREFIX
diff --git a/recipes/phava/meta.yaml b/recipes/phava/meta.yaml
new file mode 100644
index 0000000000000..03c499baa7dc2
--- /dev/null
+++ b/recipes/phava/meta.yaml
@@ -0,0 +1,42 @@
+{% set version = "0.2.3" %}
+
+package:
+  name: phava
+  version: {{ version }}
+
+source:
+  url: https://github.com/patrickwest/PhaVa/archive/refs/tags/v{{version}}.tar.gz
+  sha256: 1860afecf8d2867f105a7fa00540b7d88c6c6ca21e1bbcba89faeda60d0acbcc
+
+build:
+  number: 0
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage('phava', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.9
+  run:
+    - python >=3.9
+    - emboss >=6.5.7
+    - minimap2 >=2.17
+    - pysam >=0.17.0
+    - biopython >=1.81
+    - mmseqs2
+    - samtools
+
+test:
+  commands:
+    - phava test
+
+about:
+  home: https://github.com/patrickwest/PhaVa
+  dev_url: https://github.com/patrickwest/PhaVa
+  license: MIT
+  license_family: MIT
+  summary: Detection of invertons from long-read sequencing datasets
+
+extra:
+  recipe-maintainers:
+    - patrickwest
diff --git a/recipes/phigaro/meta.yaml b/recipes/phigaro/meta.yaml
index c7575e658cfa7..02183858fef6a 100644
--- a/recipes/phigaro/meta.yaml
+++ b/recipes/phigaro/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "phigaro" %}
-{% set version = "2.3.0" %}
+{% set version = "2.4.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,36 +7,23 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 758012cabec53841f6c18f90ef5a1dc0819e72c9b765b2c86bc0401afd7c5e8a
+  sha256: fd764d792a37984bcabaea0da39185dc6c864b8ecfbd8a806553a68ac876d800
 
 build:
-  number: 1
-  noarch: python 
+  number: 0
+  noarch: python
   entry_points:
     - phigaro = phigaro.cli.batch:main
     - phigaro-setup = phigaro.cli.helper:main
-  script: "{{ PYTHON }} -m pip install . -vv; echo https://files.pythonhosted.org/packages/51/d3/0271413b3b9d1ed2a532e2575287bec9481d2183e445ecc0ebc1df8f1ddc/singleton-0.1.0.tar.gz > requirements.txt; {{ PYTHON }} -m pip install -r requirements.txt"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv; echo https://files.pythonhosted.org/packages/51/d3/0271413b3b9d1ed2a532e2575287bec9481d2183e445ecc0ebc1df8f1ddc/singleton-0.1.0.tar.gz > requirements.txt; {{ PYTHON }} -m pip install -r requirements.txt"
+  run_exports:
+    - {{ pin_subpackage('phigaro', max_pin="x") }}
 
 requirements:
   host:
-    - argparse
-    - beautifulsoup4 >=4.4.0
-    - biopython
-    - bs4
-    - future
-    - lxml
-    - numpy
-    - pandas >=0.23.4
     - pip
-    - plotly
-    - python >=3.6
-    - pyyaml >=5.1
-    - sh
-    - six >=1.7.0
-    - prodigal
-    - hmmer
+    - python >=3.6,<=3.11.7
   run:
-    - argparse
     - beautifulsoup4 >=4.4.0
     - biopython
     - bs4
@@ -45,7 +32,7 @@ requirements:
     - numpy
     - pandas >=0.23.4
     - plotly
-    - python >=3.6
+    - python >=3.6,<=3.11.7
     - pyyaml >=5.1
     - sh
     - six >=1.7.0
@@ -67,7 +54,8 @@ test:
     - phigaro-setup --help
 
 about:
-  home: "https://phigaro.readthedocs.io/"
+  home: https://github.com/bobeobibo/phigaro
+  doc_url: "https://phigaro.readthedocs.io/"
   license: MIT
   license_family: MIT
   license_file: "LICENSE.md"
diff --git a/recipes/phispy/meta.yaml b/recipes/phispy/meta.yaml
index 1c96458f5a46e..0102087cd18f1 100644
--- a/recipes/phispy/meta.yaml
+++ b/recipes/phispy/meta.yaml
@@ -11,9 +11,11 @@ source:
   sha256: "1dc3ec45c15328577557908517254d8e4ba152416f0e6bbad39e965b86730e28"
 
 build:
-  number: 2
+  number: 3
   skip: True  # [py27 or py < 37]
   script: "{{ PYTHON }} -m pip install . --no-deps -vv "
+  run_exports:
+    - {{ pin_subpackage('phispy', max_pin="x") }}
 
 requirements:
   build:
@@ -22,7 +24,7 @@ requirements:
     - pip
     - python
   run:
-    - biopython
+    - biopython <=1.81
     - numpy
     - python
     - hmmer
diff --git a/recipes/phold/meta.yaml b/recipes/phold/meta.yaml
new file mode 100644
index 0000000000000..fd6985bdd47e0
--- /dev/null
+++ b/recipes/phold/meta.yaml
@@ -0,0 +1,62 @@
+{% set name = "phold" %}
+{% set version = "0.1.4" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: 660283dae06b866a0b903d098252288a382cb2d72a8adcc1e9a5e38a5547d9b3
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - phold = phold:main
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"      
+  run_exports:
+    - {{ pin_subpackage('phold', max_pin='x') }}
+
+requirements:
+  host:
+    - python >=3.8,<3.12
+    - pip
+  run:
+    - foldseek ==8.ef4e960
+    - python >=3.8,<3.12
+    - biopython >=1.76
+    - alive-progress >=3.0.1
+    - datasets >=2.15
+    - requests >=2.25
+    - pyarrow >=14.0.0
+    - pandas >=1.4.2
+    - loguru >=0.5.3
+    - pyyaml >=6.0
+    - click >=8.0.0
+    - sentencepiece >=0.1.99
+    - transformers >=4.34
+    - pyrodigal-gv >=0.3.1
+    - pytorch >=2.1.2
+    - numpy >=1.20
+    - pycirclize >=0.3.1
+
+
+
+test:
+  imports:
+    - phold
+  commands:
+    - phold --help
+
+about:
+  home: https://github.com/gbouras13/phold
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: Phage annotation using protein structures
+  doc_url: https://phold.readthedocs.io/en/latest/
+
+extra:
+  recipe-maintainers:
+    - gbouras13
diff --git a/recipes/phykit/meta.yaml b/recipes/phykit/meta.yaml
index 58f5ee435ca91..b4039a29dc6b9 100644
--- a/recipes/phykit/meta.yaml
+++ b/recipes/phykit/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "phykit" %}
-{% set version = "1.11.15" %}
+{% set version = "1.19.4" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: d1b6771b4226afafd37ef5b24838f90fd132a3f035eb31444c46506136f758e5
+  sha256: 18db906abd8f50dc9112e9c1cbc336f927d95abcd3656eeefc5d098461eb4606
 
 build:
   noarch: python
@@ -121,17 +121,20 @@ build:
     - pk_thread_dna = phykit.phykit:thread_dna
     - pk_pal2nal = phykit.phykit:thread_dna
     - pk_p2n = phykit.phykit:thread_dna
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage('phykit', max_pin="x") }}
 
 requirements:
   host:
     - pip
     - python >=3
   run:
-    - biopython >=1.79
-    - numpy >=1.18.2
+    - biopython >=1.81
+    - numpy >=1.24.0
     - python >=3
-    - scipy >=1.4.1
+    - scipy >=1.11.3
+    - scikit-learn >=1.4.2
 
 test:
   imports:
@@ -253,8 +256,15 @@ test:
 about:
   home: "https://github.com/jlsteenwyk/phykit"
   license: MIT
+  license_family: MIT
+  license_file: "LICENSE.md"
   summary: "PhyKIT is a UNIX shell toolkit for processing and analyzing phylogenomic data."
+  doc_url: "https://jlsteenwyk.com/PhyKIT"
+  dev_url: "https://github.com/jlsteenwyk/phykit"
 
 extra:
   recipe-maintainers:
     - pauldg
+  identifiers:
+    - doi:10.1093/bioinformatics/btab096
+    - biotools:phykit
diff --git a/recipes/phyloacc/build.sh b/recipes/phyloacc/build.sh
index 4cc5ed20fac25..b2034f66d9414 100644
--- a/recipes/phyloacc/build.sh
+++ b/recipes/phyloacc/build.sh
@@ -1,7 +1,11 @@
 #!/bin/bash
 
-make install CXX=${CXX}
-cp src/PhyloAcc-interface/phyloacc.py ${PREFIX}/bin/.
-cp src/PhyloAcc-interface/phyloacc_post.py ${PREFIX}/bin/.
+mkdir -p ${PREFIX}/bin
 mkdir -p ${SP_DIR}
-cp -R src/PhyloAcc-interface/phyloacc_lib ${SP_DIR}/.
+
+make install CXX=${CXX}
+
+cp src/PhyloAcc-interface/phyloacc.py ${PREFIX}/bin/
+ln -s ${PREFIX}/bin/phyloacc.py ${PREFIX}/bin/phyloacc
+cp src/PhyloAcc-interface/phyloacc_post.py ${PREFIX}/bin/
+cp -R src/PhyloAcc-interface/phyloacc_lib ${SP_DIR}/
diff --git a/recipes/phyloacc/meta.yaml b/recipes/phyloacc/meta.yaml
index 23e0d0afae9ca..f208151958b38 100644
--- a/recipes/phyloacc/meta.yaml
+++ b/recipes/phyloacc/meta.yaml
@@ -1,32 +1,34 @@
 {% set name = "PhyloAcc" %}
-{% set version = "2.2.0" %}
-{% set sha256 = "29b13115974545479511bd4074d766c19fd7449412bfa9792721af85f80cbe37" %}
+{% set version = "2.3.2" %}
+{% set sha256 = "552f982801be6b1df73a330106136ba970f2bbd53b8a5eff99c3f01160dfcd7f" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
-source: 
+source:
   url: https://github.com/phyloacc/PhyloAcc/archive/refs/tags/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
 
 build:
-  number: 2
-  skip: True # [py < 38]
+  number: 0
+  skip: True  # [py < 38]
+  run_exports:
+    - {{ pin_subpackage('phyloacc', max_pin="x") }}
 
 requirements:
   build:
     - {{ compiler('cxx') }}
     - make
-    - libgomp  # [linux]
-    - llvm-openmp  # [osx]
   host:
+    - python
     - gsl
     - openblas
     - blis
     - liblapack
     - armadillo
-    - python
+    - libgomp  # [linux]
+    - llvm-openmp  # [osx]
   run:
     - python
     - blis
@@ -34,27 +36,25 @@ requirements:
     - biopython >=1.79
     - numpy >=1.22
     - snakemake-minimal >=7.3
+    - libgomp  # [linux]
+    - llvm-openmp  # [osx]
 
 test:
   commands:
     - phyloacc.py --version
     - phyloacc.py --depcheck
     - phyloacc_post.py -h
-# Test commands to run after building and installing
 
 about:
   home: https://phyloacc.github.io/
-  license: GNU GPLv3 
-  license_family: GPL
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE.md
   summary: 'Bayesian estimation of substitution rate shifts in non-coding regions'
   description: 'Bayesian estimation of substitution rate shifts in non-coding regions'
-  doc_url: https://phyloacc.github.io/
+  doc_url: https://phyloacc.github.io/readme.html
   dev_url: https://github.com/phyloacc/PhyloAcc
-# Package meta info
-# URLs just point to the github page until we update the docs
 
 extra:
   recipe-maintainers:
     - gwct
-# Extra info
diff --git a/recipes/phylofisher/meta.yaml b/recipes/phylofisher/meta.yaml
index ac561da7cc0a8..29979d4e64b53 100644
--- a/recipes/phylofisher/meta.yaml
+++ b/recipes/phylofisher/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "PhyloFisher" %}
-{% set version = "1.2.10" %}
+{% set version = "1.2.13" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,16 +7,19 @@ package:
 
 source:
   url: "https://github.com/TheBrownLab/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz"
-  sha256: c707d91f040e9debc393fc6a4c006af6f5e48f5d18ec17d9acd3b53a8aa383b8
+  sha256: 0003e1820bbf84453edbf3cba68e01e2bd1c24a12608fe02bc01b1168efb5a1b
 
 build:
   noarch: python
   number: 0
-  script: "{{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv"
+  script: "{{ PYTHON }} -m pip install . --ignore-installed --no-deps -vvv"
+  run_exports:
+    - {{ pin_subpackage('phylofisher', max_pin='x') }}
 
 requirements:
   host:
     - python =3.7.10
+    - pip
   run:
     - biopython
     - ete3
@@ -46,3 +49,5 @@ about:
   license_family: MIT
   license_file: LICENSE.txt
   summary: "A package for the creation, analysis, and visualization of eukaryotic phylogenomic datasets."
+  doc_url: https://thebrownlab.github.io/phylofisher-pages/
+  dev_url: https://github.com/TheBrownLab/PhyloFisher
diff --git a/recipes/phylogenize/build.sh b/recipes/phylogenize/build.sh
new file mode 100644
index 0000000000000..9ae63aae5d8e2
--- /dev/null
+++ b/recipes/phylogenize/build.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+R -e "devtools::install_bitbucket('pbradz/phylogenize/package/phylogenize')"
diff --git a/recipes/phylogenize/meta.yaml b/recipes/phylogenize/meta.yaml
new file mode 100644
index 0000000000000..cd42efff092fe
--- /dev/null
+++ b/recipes/phylogenize/meta.yaml
@@ -0,0 +1,58 @@
+{% set version = "0.91" %}
+{% set sha256 = "3d428440f7a8aed3be18bbe094d3afe94f2d5357daa715d13e963c665384f2ab" %}
+{% set name = "phylogenize" %}
+
+package:
+  name: phylogenize
+  version: "{{ version }}"
+
+source: 
+  url: https://github.com/pbradleylab/phylogenize/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  host:
+    - perl =5.32.1
+    - r-base =4.3.1
+    - r-devtools <=2.4.5 
+    - vsearch =2.24.0
+    - r-ragg <=1.2.6
+    - r-phylolm =2.6.2
+    - r-phangorn =2.11.1
+    - 'bioconductor-ggtree <=3.8.0,>1.16.0'
+    - 'bioconductor-biomformat =1.28.0'
+  run:
+    - perl =5.32.1
+    - r-base =4.3.1
+    - r-devtools <=2.4.5
+    - vsearch =2.24.0
+    - r-ragg <=1.2.6
+    - r-phylolm =2.6.2
+    - r-phangorn =2.11.1
+    - 'bioconductor-ggtree <=3.8.0,>1.16.0'
+    - 'bioconductor-biomformat =1.28.0'
+
+test:
+  commands:
+    - '$R -e "library(devtools)"'
+    - $R -e "devtools::install_github('pbradleylab/phylogenize/package/phylogenize')"
+    - '$R -e "?phylogenize"'
+
+about:
+  home: https://github.com/pbradleylab/phylogenize
+  license: MIT
+  summary: "Phylogenize is a tool that allows users to link microbial genes to environments, accounting for phylogeny."
+extra:
+  recipe-maintainers:
+    - kekananen
+  indentifiers:
+    - doi: "https://doi.org/10.1093/bioinformatics/btz722"
diff --git a/recipes/phylophlan/meta.yaml b/recipes/phylophlan/meta.yaml
index e5e40d9312b5b..87c643c292cb0 100644
--- a/recipes/phylophlan/meta.yaml
+++ b/recipes/phylophlan/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "phylophlan" %}
-{% set version = "3.0.3" %}
-{% set sha256 = "d8d0082c95d58d7b11a60c1e2214b35c1a23a65675005f1393e7647d76c6a054" %}
+{% set version = "3.1.1" %}
+{% set sha256 = "67df67b60b5a361ee9354db031608213d3ecfa2f9ec78104cb3e81903a8cc07a" %}
 
 package:
   name: "{{ name|lower }}"
@@ -15,6 +15,8 @@ build:
   noarch: python
   number: 0
   script: "{{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv"
+  run_exports:
+    - {{ pin_subpackage('phylophlan', max_pin='x.x') }}
 
 requirements:
   host:
@@ -39,13 +41,14 @@ requirements:
     - raxml >=8.2.10
     - iqtree >=1.6.6
     - mash
+    - requests
 
 test:
   commands:
     - phylophlan --version
     - phylophlan_draw_metagenomic --version
     - phylophlan_get_reference --version
-    - phylophlan_metagenomic --version
+    - phylophlan_assign_sgbs --version
     - phylophlan_setup_database --version
     - phylophlan_strain_finder --version
     - phylophlan_write_config_file --version
diff --git a/recipes/phylornn/meta.yaml b/recipes/phylornn/meta.yaml
new file mode 100644
index 0000000000000..fd87847f297f0
--- /dev/null
+++ b/recipes/phylornn/meta.yaml
@@ -0,0 +1,46 @@
+{% set version = "1.0" %} # Remember to also update sha256 below
+{% set sha256 = "3c78cff8031dff8f428c4ec2942d03404a9218cbd138cff85b4614020c531d78" %}
+
+package:
+  name: phylornn
+  version: {{ version }}
+
+source:
+  url:  https://github.com/phyloRNN/phyloRNN/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  noarch: python
+  number: 0
+  script: {{ PYTHON }} -m pip install . -vv
+  run_exports:
+    - {{ pin_subpackage('phylornn', max_pin="x") }} 
+
+requirements:
+  host:
+    - python >=3.8
+    # - setuptools
+  run:
+    - python >=3.8
+    - numpy >=1.23.1,<1.24
+    - seaborn >=0.11.2,<0.12
+    - matplotlib-base >=3.5.2,<3.6
+    - pandas >=1.4.3,<1.5
+    - scipy >=1.8.1,<1.9
+    - dendropy >=4.5.2,<4.6
+    - tensorflow >=2.9.1,<3
+    - keras >=2.9.0,<2.10
+    - seq-gen >=1.3.0,<1.4
+    - phyml >=3.3.0,<3.4
+    - biopython >=1.81,<2
+
+test:
+  imports:
+    - phyloRNN
+
+about:
+  home: https://github.com/phyloRNN/phyloRNN
+  license: LPGL-2.1-only
+  license_family: LGPL
+  summary: PhyloRNN
+
diff --git a/recipes/phynder/build.sh b/recipes/phynder/build.sh
new file mode 100644
index 0000000000000..0c5bc4499456d
--- /dev/null
+++ b/recipes/phynder/build.sh
@@ -0,0 +1,37 @@
+#!/bin/bash
+set -x
+set +e
+
+export CFLAGS="$CFLAGS -I$PREFIX/include"
+export LDFLAGS="$LDFLAGS -L$PREFIX/lib"
+export CPATH=${PREFIX}/include
+
+## Static lib required by phynder, thus following instructions
+## rather than trying to take from a conda htslib
+git clone https://github.com/samtools/htslib.git
+cd htslib
+git submodule update --init --recursive
+
+## from https://github.com/pachterlab/kallisto/issues/303#issuecomment-884612169
+sed '/AC_PROG_CC/a \
+AC_CANONICAL_HOST \
+AC_PROG_INSTALL \
+' configure.ac >configure.ac2
+mv configure.ac2 configure.ac
+autoreconf -i
+autoheader
+autoconf
+
+./configure --prefix=${PREFIX} --enable-libcurl --with-libdeflate --enable-plugins --enable-gcs --enable-s3
+make lib-static htslib_static.mk
+make CC=$CC install
+
+## Patch phynder Makefile to cloned htslib folder (original assumes alongside, not within)
+cd ../
+sed -i 's#HTSDIR=../htslib#HTSDIR=./htslib#g' Makefile
+sed -i -e 's#LDLIBS=$(HTSLIB) -lpthread $(HTSLIB_static_LIBS)#LDLIBS=$(HTSLIB) -lpthread $(HTSLIB_static_LIBS) $(LDFLAGS)#g' -e 's#cp phynder ~/bin##g' Makefile
+
+make CC=$CC CFLAGS="$CFLAGS" LDFLAGS="$LDFLAGS"
+make install
+
+cp phynder $PREFIX/bin/
diff --git a/recipes/phynder/meta.yaml b/recipes/phynder/meta.yaml
new file mode 100644
index 0000000000000..e8c861e84d27f
--- /dev/null
+++ b/recipes/phynder/meta.yaml
@@ -0,0 +1,50 @@
+{% set name = "phynder" %}
+{% set version = "1.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/richarddurbin/{{ name | lower }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 94d629d0c2e9085bfe9dbbe2c6302021ad81a00b3696696e103aa31db51d849f
+
+build:
+  number: 0
+  skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage('phynder', max_pin="x.x") }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('c') }}
+    - autoconf
+    - automake
+  host:
+    - libcurl
+    - bzip2
+    - xz
+    - zlib
+    - libdeflate
+    - openssl  # [not osx]
+
+
+test:
+  commands:
+    - phynder -h
+about:
+  home: https://github.com/richarddurbin/phynder
+  dev_url: https://github.com/richarddurbin/phynder
+  license: MIT
+  license_file: LICENSE
+  summary: Efficient likelihood calculations to place samples into a phylogenetic tree.
+  description: |
+    Efficient likelihood calculations to place samples into a phylogenetic tree. 
+    In particular, phynder was originally designed for placing male ancient DNA 
+    samples into the Y chromosome phylogeny, when there are arbitrarily high rates 
+    of missing data. It has also been used for assigning ancient samples to whole 
+    mitochondrial genome phylogenies.
+extra:
+  maintainers:
+    - jfy133
\ No newline at end of file
diff --git a/recipes/phynteny/meta.yaml b/recipes/phynteny/meta.yaml
new file mode 100644
index 0000000000000..695e5ad48931a
--- /dev/null
+++ b/recipes/phynteny/meta.yaml
@@ -0,0 +1,56 @@
+{% set name = "Phynteny" %}
+{% set version = "0.1.13" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://github.com/susiegriggo/Phynteny/archive/refs/tags/{{ version }}.tar.gz"
+  sha256: b613950a00ebf60714cf053cf846c5bc84da668b2e87dd2fd83361c7856a8e04
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - generate_training_data=train_phynteny.generate_training_data:main
+    - train_model=train_phynteny.train_phyntenty:main
+    - compute_confidence=train_phynteny.compute_confidence:main
+    - install_models=phynteny_utils.install_models:main
+  script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage('phynteny', max_pin='x') }}
+
+requirements:
+  host:
+    - pip
+    - python
+  run:
+    - biopython >=1.79
+    - click
+    - joblib
+    - alive-progress
+    - loguru
+    - numpy
+    - pandas 
+    - python <3.11
+    - scikit-learn <=1.2.2
+    - tensorflow-cpu ==2.9.1
+    - python_abi 
+
+test:
+  commands:
+    - phynteny --help 
+
+about:
+  home: "https://github.com/susiegriggo/Phynteny"
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE 
+  summary: "Phynteny: Synteny-based prediction of bacteriophage genes"
+  doc_url: 
+  dev_url: https://github.com/susiegriggo/Phynteny
+
+extra:
+  recipe-maintainers:
+    - susiegriggo
diff --git a/recipes/physher/build.sh b/recipes/physher/build.sh
new file mode 100644
index 0000000000000..9e841b22143c6
--- /dev/null
+++ b/recipes/physher/build.sh
@@ -0,0 +1,5 @@
+#!/bin/bash
+
+cmake -S . -B build -DBUILD_CPP_WRAPPER=on -DCMAKE_INSTALL_PREFIX=$PREFIX
+
+cmake --build build/ --target install
\ No newline at end of file
diff --git a/recipes/physher/meta.yaml b/recipes/physher/meta.yaml
new file mode 100644
index 0000000000000..7c864f1e5360d
--- /dev/null
+++ b/recipes/physher/meta.yaml
@@ -0,0 +1,43 @@
+{% set name = "physher" %}
+{% set version = "2.0.0" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('physher', max_pin="x") }}
+
+source:
+  url: https://github.com/4ment/physher/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 89de0789af1136ca9a08f009b1db45d441bcb1d4ea7519103a998916b37c618f
+
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - cmake
+    - make
+  host:
+    - gsl
+
+test:
+  commands:
+    - physher
+
+about:
+  home: https://github.com/4ment/physher
+  license: GPL-2.0-or-later
+  license_family: GPL2
+  license_file: LICENSE
+  summary: A multi-algorithmic framework for phylogenetic inference
+
+extra:
+  maintainers:
+    - 4ment
+  identifiers:
+    - doi:10.1186/s12862-014-0163-6
+    - biotools:physher
diff --git a/recipes/physiofit/meta.yaml b/recipes/physiofit/meta.yaml
new file mode 100644
index 0000000000000..aec1c034ed92d
--- /dev/null
+++ b/recipes/physiofit/meta.yaml
@@ -0,0 +1,55 @@
+{% set name = "physiofit" %}
+{% set version = "3.3.6" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/physiofit-{{ version }}.tar.gz
+  sha256: 6d6aa155ec16ca1da9bb04548b506adfd70b8b1000cd6eb3aa1ee4634a738af1
+
+build:
+  entry_points:
+    - physiofit = physiofit.__main__:main
+  noarch: python
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('physiofit', max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.8,<3.9.7|>3.9.7,<3.12
+    - poetry-core
+    - pip
+  run:
+    - python >=3.8,<3.9.7|>3.9.7,<3.12
+    - pandas >=2.0.1
+    - numpy >=1.24.2
+    - scipy >=1.10.1
+    - streamlit >=1.20.0
+    - matplotlib-base >=3.7.1
+    - pyarrow >=14.0.1,<15.0.0
+    - pyyaml >=6.0.0
+
+test:
+  imports:
+    - physiofit
+  commands:
+    - physiofit --help
+
+about:
+  home: https://github.com/MetaSys-LISBP/PhysioFit
+  summary: Calculate extracellular fluxes from metabolite concentrations and biomass data
+  license: GPL-3.0-only
+  license_family: GPL3
+  license_file: LICENSE
+  doc_url: https://physiofit.readthedocs.io/en/latest/
+  dev_url: https://github.com/MetaSys-LISBP/PhysioFit
+
+extra:
+  recipe-maintainers:
+    - llegregam
+  identifiers:
+    - doi:10.1101/2023.10.12.561695
diff --git a/recipes/phytest/meta.yaml b/recipes/phytest/meta.yaml
new file mode 100644
index 0000000000000..71fb8bfd5bca3
--- /dev/null
+++ b/recipes/phytest/meta.yaml
@@ -0,0 +1,60 @@
+{% set name = "phytest" %}
+{% set version = "1.4.1" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/phytest-{{ version }}.tar.gz
+  sha256: a4083778922020f317efd02474a35dcb822df6451b6e9a6e9350bb1c1ce336a2
+
+build:
+  entry_points:
+    - phytest = phytest.cli:app
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.8,<=3.11
+    - poetry-core >=1.0.0
+    - pip
+  run:
+    - python >=3.8,<=3.11
+    - pytest >=7.1.1
+    - pytest-sugar >=0.9.4
+    - pytest-html >=3.1.1
+    - typer >=0.4.1
+    - biopython >=1.79
+    - treetime >=0.8.6
+    - scipy >=1.8.0
+    - numpy >=1.22.3
+    - pytest-xdist >=3.2.0
+
+test:
+  imports:
+    - phytest
+  commands:
+    - pip check
+    - phytest --help
+  requires:
+    - pip
+
+about:
+  home: https://github.com/phytest-devs/phytest
+  dev_url: https://github.com/phytest-devs/phytest
+  doc_url: https://phytest-devs.github.io/phytest/
+  summary: Quality control for phylogenetic pipelines using pytest
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - vinisalazar
+    - rbturnbull
+    - Wytamma
+    - smutch
diff --git a/recipes/pia/build.sh b/recipes/pia/build.sh
new file mode 100644
index 0000000000000..1414b0b5646e7
--- /dev/null
+++ b/recipes/pia/build.sh
@@ -0,0 +1,13 @@
+#!/bin/bash
+set -eu -o pipefail
+
+outdir=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
+mkdir -p $outdir
+mkdir -p $PREFIX/bin
+cp -R * $outdir/
+
+ln -s $outdir/pia-$PKG_VERSION.jar $outdir/pia.jar
+
+cp $RECIPE_DIR/pia.sh $outdir/pia
+ln -s $outdir/pia $PREFIX/bin
+chmod 0755 "${PREFIX}/bin/pia"
diff --git a/recipes/pia/meta.yaml b/recipes/pia/meta.yaml
new file mode 100644
index 0000000000000..187827de84b2a
--- /dev/null
+++ b/recipes/pia/meta.yaml
@@ -0,0 +1,51 @@
+{% set name = "pia" %}
+{% set version = "1.5.0" %}
+{% set sha256 = "1f7dee6522927dfec13fadaf12a75e209f6f19f16cf20e8bb2ffa27993d4d886" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+build:
+  noarch: generic
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('pia', max_pin="x") }}
+
+source:
+  url: https://github.com/medbioinf/pia/releases/download/{{ version }}/pia-{{ version }}.zip
+  sha256: {{ sha256 }}
+
+requirements:
+  run:
+    - openjdk >=21
+
+test:
+  commands:
+    - pia --help
+    - pia -Xms512m -Xmx2g --help
+
+about:
+  home: https://github.com/medbioinf/pia
+  license: BSD-3-Clause
+  license_file: LICENSE
+  summary: PIA is a toolbox for MS based protein inference and identification analysis.
+  description: |
+   PIA allows you to inspect the results of common proteomics spectrum identification
+   search engines, combine them seamlessly and conduct statistical analyses. The main
+   focus of PIA lays on the integrated inference algorithms, i.e. concluding the proteins
+   from a set of identified spectra. But it also allows you to inspect your peptide
+   spectrum matches, calculate FDR values across different search engine results and
+   visualize the correspondence between PSMs, peptides and proteins.
+
+extra: 
+  identifiers:
+    - biotools:pia
+    - doi:10.1021/acs.jproteome.5b00121
+  notes: |
+    PIA is Java program that comes with a custom wrapper shell script.
+    This shell wrapper is called "pia" and is on $PATH by default. By default
+    "-Xms2g -Xmx4g" is set in the wrapper. If you want to overwrite it you can
+    specify these values directly after your binaries. If you have _JAVA_OPTIONS
+    set globally this will take precedence.
+    For example run it with "pia -Xms512m -Xmx2g" for a lower memory footprint.
diff --git a/recipes/pia/pia.sh b/recipes/pia/pia.sh
new file mode 100644
index 0000000000000..dfee7ec12a982
--- /dev/null
+++ b/recipes/pia/pia.sh
@@ -0,0 +1,58 @@
+#!/bin/bash
+# Wraps pia.jar
+set -o pipefail
+
+jar_file="pia.jar"
+
+# Find original directory of bash script, resovling symlinks
+# http://stackoverflow.com/questions/59895/can-a-bash-script-tell-what-directory-its-stored-in/246128#246128
+SOURCE="${BASH_SOURCE[0]}"
+while [ -h "$SOURCE" ]; do # resolve $SOURCE until the file is no longer a symlink
+    DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
+    SOURCE="$(readlink "$SOURCE")"
+    [[ $SOURCE != /* ]] && SOURCE="$DIR/$SOURCE" # if $SOURCE was a relative symlink, we need to resolve it relative to the path where the symlink file was located
+done
+DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
+
+JAR_DIR=$DIR
+java=java
+if [ -e "$JAVA_HOME/bin/java" ]
+then
+java="$JAVA_HOME/bin/java"
+fi
+
+# extract memory and system property Java arguments from the list of provided arguments
+# http://java.dzone.com/articles/better-java-shell-script
+default_jvm_mem_opts="-Xms2g -Xmx4g"
+jvm_mem_opts=""
+jvm_prop_opts=""
+pass_args=""
+for arg in "$@"; do
+    case $arg in
+        '-D'*)
+            jvm_prop_opts="$jvm_prop_opts $arg"
+            ;;
+        '-XX'*)
+            jvm_prop_opts="$jvm_prop_opts $arg"
+            ;;
+         '-Xm'*)
+            jvm_mem_opts="$jvm_mem_opts $arg"
+            ;;
+         *)
+            pass_args="$pass_args $arg"
+            ;;
+    esac
+done
+
+if [ "$jvm_mem_opts" == "" ] && [ -z ${_JAVA_OPTIONS+x} ]; then
+    jvm_mem_opts="$default_jvm_mem_opts"
+fi
+
+pass_arr=($pass_args)
+if [[ ${pass_arr[0]} == org* ]]
+then
+    eval "$java" $jvm_mem_opts $jvm_prop_opts -cp "$JAR_DIR/$jar_file" $pass_args
+else
+    eval "$java" $jvm_mem_opts $jvm_prop_opts -jar "$JAR_DIR/$jar_file" $pass_args
+fi
+exit
diff --git a/recipes/picard-slim/build.sh b/recipes/picard-slim/build.sh
index 7773415f1d27d..5e341fd187253 100644
--- a/recipes/picard-slim/build.sh
+++ b/recipes/picard-slim/build.sh
@@ -4,12 +4,7 @@ TGT="$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM"
 [ -d "$TGT" ] || mkdir -p "$TGT"
 [ -d "${PREFIX}/bin" ] || mkdir -p "${PREFIX}/bin"
 
-cd "${SRC_DIR}"
-# Do not install Linux specific x86-acceleration libraries
-if [ "$(uname)" == "Darwin" ]; then
-    rm -f libIntel*.so
-fi
-cp -rvp . "${TGT}"
+cp -p "$SRC_DIR"/*.jar "$TGT"
 
 cp $RECIPE_DIR/picard.sh $TGT/picard
 ln -s $TGT/picard $PREFIX/bin
diff --git a/recipes/picard-slim/meta.yaml b/recipes/picard-slim/meta.yaml
index 5695bce88414c..c8de8e67a58e6 100644
--- a/recipes/picard-slim/meta.yaml
+++ b/recipes/picard-slim/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "3.0.0" %}
-{% set sha256 = "0d5e28ab301fad3b02030d01923888129ba82c5f722ac5ccb2d418ab76ac5499" %}
+{% set version = "3.1.1" %}
+{% set sha256 = "15c79f51fd0ac001049f9dd7b9bac1dbdf759dcb0230a89c7f6d1f246e8bbab4" %}
 
 package:
   name: picard-slim
@@ -12,6 +12,8 @@ source:
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('picard-slim', max_pin='x') }}
 
 requirements:
   run:
diff --git a/recipes/picard/build.sh b/recipes/picard/build.sh
index 7773415f1d27d..5e341fd187253 100644
--- a/recipes/picard/build.sh
+++ b/recipes/picard/build.sh
@@ -4,12 +4,7 @@ TGT="$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM"
 [ -d "$TGT" ] || mkdir -p "$TGT"
 [ -d "${PREFIX}/bin" ] || mkdir -p "${PREFIX}/bin"
 
-cd "${SRC_DIR}"
-# Do not install Linux specific x86-acceleration libraries
-if [ "$(uname)" == "Darwin" ]; then
-    rm -f libIntel*.so
-fi
-cp -rvp . "${TGT}"
+cp -p "$SRC_DIR"/*.jar "$TGT"
 
 cp $RECIPE_DIR/picard.sh $TGT/picard
 ln -s $TGT/picard $PREFIX/bin
diff --git a/recipes/picard/meta.yaml b/recipes/picard/meta.yaml
index 6df47ae6c773e..d8dfd44a2f90e 100644
--- a/recipes/picard/meta.yaml
+++ b/recipes/picard/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "3.0.0" %}
-{% set sha256 = "0d5e28ab301fad3b02030d01923888129ba82c5f722ac5ccb2d418ab76ac5499" %}
+{% set version = "3.1.1" %}
+{% set sha256 = "15c79f51fd0ac001049f9dd7b9bac1dbdf759dcb0230a89c7f6d1f246e8bbab4" %}
 
 package:
   name: picard
@@ -11,7 +11,9 @@ source:
 
 build:
   noarch: generic
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('picard', max_pin='x') }}
 
 requirements:
   run:
diff --git a/recipes/pileuppy/meta.yaml b/recipes/pileuppy/meta.yaml
index d483cef317421..17d081ab4da5e 100644
--- a/recipes/pileuppy/meta.yaml
+++ b/recipes/pileuppy/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pileuppy" %}
-{% set version = "1.1.1" %}
+{% set version = "1.2.0" %}
 
 package:
   name: {{ name|lower }}
@@ -7,11 +7,13 @@ package:
 
 source:
   url: https://gitlab.com/tprodanov/{{ name }}/-/archive/v{{ version }}/{{ name }}-v{{ version }}.tar.gz
-  sha256: 1691e2cba5a32845a8b4953bae70934cbf4d54103413798dd97a78b03d9e2045
+  sha256: fd1a3ab0cd7dc3205abe3566f21fffb4ff525b034b86aa2cc3902e06c3469d3f
 
 build:
   noarch: python
   number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
   script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
 
 requirements:
diff --git a/recipes/pindel/meta.yaml b/recipes/pindel/meta.yaml
index 0a5b46a78ad9d..fc5a2aae1e96c 100644
--- a/recipes/pindel/meta.yaml
+++ b/recipes/pindel/meta.yaml
@@ -6,8 +6,10 @@ package:
   version: {{ version }}
 
 build:
-  number: 10
+  number: 11
   skip: True # [osx]
+  run_exports:
+    - {{ pin_subpackage('pindel', max_pin='x.x') }}
 
 source:
   url: https://github.com/genome/pindel/archive/{{ revision }}.tar.gz
@@ -23,6 +25,7 @@ requirements:
     - make
   host:
     - htslib
+    - zlib
   run:
     - htslib
 
@@ -37,5 +40,7 @@ about:
   summary: Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:pindel
diff --git a/recipes/piper/meta.yaml b/recipes/piper/meta.yaml
index 76fd6209d8356..1ba5d74d77b4c 100644
--- a/recipes/piper/meta.yaml
+++ b/recipes/piper/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "piper" %}
-{% set version = "0.12.3" %}
+{% set version = "0.14.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: "0ec7d4c4fd9cd1142e87193483c4f92022adbe2cd0f4678f2a1ea8227cdcd9fd"
+  sha256: "2d2b226689f2e992da0735f25ea432f16f230bfaef51e732ef50b1b495ce153c"
 
 build:
   number: 0
   noarch: python
-  script: "2to3 . && {{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  script: "2to3 . && {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('piper', max_pin="x.x") }}
 
 requirements:
   host:
@@ -26,6 +28,7 @@ requirements:
     - python >=3
     - ubiquerg >=0.4.5
     - yacman
+    - pipestat >=0.4.0
 
 test:
   imports:
@@ -42,6 +45,9 @@ about:
   home: "https://github.com/databio/pypiper/"
   license: "BSD-2-Clause"
   license_family: "BSD"
+  license_file: LICENSE.txt
+  dev_url: https://github.com/databio/pypiper/
+  doc_url: https://pypiper.databio.org/en/latest/
   summary: "A lightweight python toolkit for gluing together restartable, robust command line pipelines"
 
 extra:
diff --git a/recipes/piranha-polio/meta.yaml b/recipes/piranha-polio/meta.yaml
index 0298aa8ecfe7e..baed5463e406f 100644
--- a/recipes/piranha-polio/meta.yaml
+++ b/recipes/piranha-polio/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.0.12" %}
+{% set version = "1.2.3" %}
 
 package:
   name: piranha-polio
@@ -6,12 +6,16 @@ package:
 
 source:
   url: https://github.com/polio-nanopore/piranha/archive/refs/tags/{{ version }}.tar.gz
-  sha256: 7988e0f8603630dae0decda6fc36138b442a841b2d54d78d2086ef5ebd060249
+  sha256: b39d8309e0c9758a620adb9d85243323d965731a57b802c70689459098739ace
 
 build:
   number: 0
   noarch: python
-  script: python -m pip install --no-deps --ignore-installed .
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation . -vvv
+  entry_points:
+    - piranha = piranha.command:main
+  run_exports:
+    - {{ pin_subpackage("piranha-polio", max_pin="x") }}
 
 requirements:
   host:
@@ -25,6 +29,7 @@ requirements:
     - mako >=1.2
     - medaka >=1.7.1
     - minimap2 >=2.17
+    - numpy <=1.23.5
     - pandas
     - pysam
     - python <3.10
@@ -41,5 +46,6 @@ test:
 about:
   home: https://github.com/polio-nanopore/piranha
   license: GPL-3.0-only
+  license_family: GPL3
   license_file: LICENSE
   summary: Poliovirus Investigation Resource Automating Nanopore Haplotype Analysis
diff --git a/recipes/piscem-infer/build.sh b/recipes/piscem-infer/build.sh
new file mode 100644
index 0000000000000..fd9c0897999fd
--- /dev/null
+++ b/recipes/piscem-infer/build.sh
@@ -0,0 +1,8 @@
+#!/bin/bash -euo
+# Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
+# We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
+export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="$(pwd)/.cargo"
+
+# build statically linked binary with Rust
+RUST_BACKTRACE=1 cargo install --verbose --root $PREFIX --path .
+
diff --git a/recipes/piscem-infer/meta.yaml b/recipes/piscem-infer/meta.yaml
new file mode 100644
index 0000000000000..885cbc257f927
--- /dev/null
+++ b/recipes/piscem-infer/meta.yaml
@@ -0,0 +1,31 @@
+{% set version = "0.6.0" %}
+
+package:
+  name: piscem-infer
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("piscem-infer", max_pin="x.x") }}
+    
+source:
+  url: https://github.com/COMBINE-lab/piscem-infer/archive/v{{ version }}.tar.gz
+  sha256: 6ffaaf9d101f42a983d715857504c99ef60c3449ff14505e4c6b6c521e00d928
+
+requirements:
+  build:
+    - rust >=1.75
+    - {{ compiler('rust') }}
+  host:
+  run:
+
+test:
+  commands:
+    - piscem-infer --help
+
+about:
+  home: https://github.com/COMBINE-lab/piscem-infer
+  license: BSD-3-Clause
+  license_file: LICENSE
+  summary: piscem-infer is a flexible tool to perform target quantification from bulk-sequencing data
diff --git a/recipes/piscem/build.sh b/recipes/piscem/build.sh
index acd3d77c823be..4f3eb6f967819 100644
--- a/recipes/piscem/build.sh
+++ b/recipes/piscem/build.sh
@@ -19,16 +19,20 @@ fi
 # We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
 export CARGO_NET_GIT_FETCH_WITH_CLI=true 
 export CARGO_HOME="$(pwd)/.cargo"
+export NUM_JOBS=1
+export CARGO_BUILD_JOBS=1
 
 if [ "$unamestr" == 'Darwin' ];
 then
 
 # build statically linked binary with Rust
-RUSTFLAGS="-C link-args=-Wl,-undefined,dynamic_lookup" RUST_BACKTRACE=1 cargo install --verbose --root $PREFIX --path .
+RUSTFLAGS="-C link-args=-Wl,-undefined,dynamic_lookup" RUST_BACKTRACE=1 cargo install -v -v -j 1 --verbose --root $PREFIX --path .
 
 else
 
+export CFLAGS="${CFLAGS} --param ggc-min-expand=20 --param ggc-min-heapsize=8192"
+export CXXFLAGS="${CXXFLAGS} --param ggc-min-expand=20 --param ggc-min-heapsize=8192"
 # build statically linked binary with Rust
-RUST_BACKTRACE=1 cargo install --verbose --root $PREFIX --path .
+RUST_BACKTRACE=1 cargo install -v -v -j 1 --verbose --root $PREFIX --path .
 
 fi
diff --git a/recipes/piscem/conda_build_config.yaml b/recipes/piscem/conda_build_config.yaml
index 90ff7dab2c6f3..ca927c3a82db0 100644
--- a/recipes/piscem/conda_build_config.yaml
+++ b/recipes/piscem/conda_build_config.yaml
@@ -2,3 +2,7 @@ MACOSX_DEPLOYMENT_TARGET:  # [osx and x86_64]
   - "10.15"                # [osx and x86_64]
 MACOSX_SDK_VERSION:        # [osx and x86_64]
   - "10.15"                # [osx and x86_64]
+c_compiler_version:    # [linux]
+    - 11.4             # [linux]
+cxx_compiler_version:  # [linux]
+    - 11.4             # [linux]
diff --git a/recipes/piscem/meta.yaml b/recipes/piscem/meta.yaml
index c9db07909e353..2d201ea73f29e 100644
--- a/recipes/piscem/meta.yaml
+++ b/recipes/piscem/meta.yaml
@@ -1,13 +1,15 @@
-{% set version = "0.6.0" %}
-{% set git_commit = "971bca20382cc568fab9248820252a3f5de19040" %}
-{% set sha256 = "dc0caa7568e8e85acc204b4edf32a4fd50bb1d22db817ac44ff0b241ddc9b244" %}
+{% set version = "0.8.0" %}
+{% set git_commit = "413dd69008519c5d8157b7985578e767b321109c" %}
+{% set sha256 = "a72af2ab728e95aa6766a3bb4520af6273a9ea3be44a6a8dc260cd97615877df" %}
 
 package:
   name: piscem
   version: {{ version }}
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("piscem", max_pin="x.x") }}
   # skip: True  # [linux]
 
 source:
@@ -17,7 +19,7 @@ source:
 
 requirements:
   build:
-    - rust >=1.66  
+    - rust >=1.75  
     - cmake
     - autoconf
     - make
@@ -33,7 +35,7 @@ requirements:
     - jemalloc >=5.1.2
   run:
     - __osx >={{ MACOSX_DEPLOYMENT_TARGET|default("10.9") }}  # [osx and x86_64]
-
+    
 test:
   commands:
     - piscem --help
diff --git a/recipes/pixelator/LICENSE.txt b/recipes/pixelator/LICENSE.txt
new file mode 100644
index 0000000000000..b8a6b593ecff8
--- /dev/null
+++ b/recipes/pixelator/LICENSE.txt
@@ -0,0 +1,21 @@
+MIT License
+
+Copyright © 2023 Pixelgen Technologies AB
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.
\ No newline at end of file
diff --git a/recipes/pixelator/meta.yaml b/recipes/pixelator/meta.yaml
new file mode 100644
index 0000000000000..e9c3bc24d2e7e
--- /dev/null
+++ b/recipes/pixelator/meta.yaml
@@ -0,0 +1,81 @@
+{% set name = "pixelator" %}
+{% set pypi_name = "pixelgen-pixelator" %}
+{% set version = "0.17.1" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ pypi_name[0] }}/{{ pypi_name }}/pixelgen_pixelator-{{ version }}.tar.gz
+  sha256: 01acdd9bc3f9c016b3cfa6f707ce50e2f6dd452db1fa14348be762ff9b293ba2
+
+build:
+  entry_points:
+    - pixelator = pixelator.cli:main_cli
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('pixelator', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.10,<3.12
+    - poetry-core >=1.0.0
+    - poetry-dynamic-versioning >=1.0.1
+    - pip
+  run:
+    - python >=3.10,<3.12
+    - click
+    - yapf
+    - cutadapt >=4.2
+    - umi_tools <=1.1.4
+    - pyfastx
+    - yappi
+    - pandas >=2.0.0,<3.0.0
+    - numpy <1.24.0
+    - python-annoy <=1.17.0
+    # I had to lock xopen < 1.9.0 because zlib-ng which is required by xopen
+    # does not install as expected
+    - xopen <1.9.0 
+    - anndata >=0.8.0
+    - numba >=0.56.4
+    - scanpy
+    - lxml
+    - cssselect
+    - typing_extensions
+    - scipy <1.13.0
+    - pyarrow >=14,<16
+    - semver >=3.0.0,<4.0.0
+    - ruamel.yaml >=0.17.21,<0.18.0
+    - pydantic >=2.0,<2.5
+    - polars 0.20.19
+    - importlib-resources >=5.12.0,<6.0.0
+    - fsspec >=2023.12.2,<2024.0.0
+    - fastparquet >=2023.8.0,<2024.0.0
+    - graspologic >=3.3.0,<4.0.0
+    - fastp
+    - plotly
+
+test:
+  imports:
+    - pixelator
+  commands:
+    - pip check
+    - pixelator --help
+  requires:
+    - pip
+
+about:
+  home: https://github.com/PixelgenTechnologies/pixelator
+  summary: A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays.
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE.txt
+
+extra:
+  recipe-maintainers:
+    - johandahlberg
+    - ambarrio
+    - fbdtemme
diff --git a/recipes/planemo/meta.yaml b/recipes/planemo/meta.yaml
index d7ad35c0eb622..4d0b0f2dcb6c6 100644
--- a/recipes/planemo/meta.yaml
+++ b/recipes/planemo/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "planemo" %}
-{% set version = "0.75.9" %}
-{% set sha256 = "3f3d7eec5cad277f2ef9d9fc2f1cb6fae9f9ff61bc7754c510b6bb435dbc36f2" %}
+{% set version = "0.75.22" %}
+{% set sha256 = "ad6b7b0eeb8d180004963b72bad5ec630d396a3ac0c36f9d1403927413158b8b" %}
 
 package:
   name: {{ name|lower }}
@@ -13,7 +13,9 @@ source:
 build:
   number: 0
   noarch: python
-  script: {{ PYTHON }} -m pip install . --no-deps -vvv
+  run_exports:
+    - {{ pin_subpackage('planemo', max_pin='x.x') }}
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
   entry_points:
     - planemo = planemo.cli:planemo
 
@@ -31,8 +33,8 @@ requirements:
     - docutils
     - ephemeris >=0.10.3
     - galaxy-containers
-    - galaxy-tool-util >=23.0,<23.1
-    - galaxy-util >=23.0,<23.1
+    - galaxy-tool-util >=23.1,<24.0
+    - galaxy-util >=23.1,<24.0
     - glob2
     - gxformat2 >=0.14.0
     - h5py
diff --git a/recipes/plannotate/build.sh b/recipes/plannotate/build.sh
index d4b889a0f0686..1d5996d0c05ac 100644
--- a/recipes/plannotate/build.sh
+++ b/recipes/plannotate/build.sh
@@ -3,5 +3,5 @@ set -ex
 $PYTHON -m pip install . --no-deps --ignore-installed -vv
 
 # Install databases
-bpath=`python -c "import sys; print(sys.path[-1])"`
-mv BLAST_dbs $bpath/plannotate/data/
+bpath=$(python -c "import sys; print(sys.path[-1])")
+mv BLAST_dbs "$bpath"/plannotate/data/
diff --git a/recipes/plannotate/meta.yaml b/recipes/plannotate/meta.yaml
index 96c1da7fa1058..ebb56cfdfd40c 100644
--- a/recipes/plannotate/meta.yaml
+++ b/recipes/plannotate/meta.yaml
@@ -1,49 +1,49 @@
-{% set version = "1.2.0" %}
+{% set version = "1.2.2" %}
 
 package:
   name: plannotate
   version: {{ version }}
 
 build:
-  number: 4
+  number: 0
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('plannotate', max_pin="x") }}
 
 source:
-  - url: https://github.com/barricklab/pLannotate/archive/refs/tags/v{{version}}.tar.gz
-    sha256: d58d11592d62efdcf6834c6aa6188f58efb1129132e13c6342f1a523e0aa7497
-    patches:
-      - patch
-  - url: https://github.com/barricklab/pLannotate/releases/download/v{{version}}/BLAST_dbs.tar.gz
+  - url: https://github.com/mmcguffi/pLannotate/archive/refs/tags/v{{version}}.tar.gz
+    sha256: 423ad78a90d2fa13eed538b2ecdd939342388a5137b75de0c5d50c12974be3d6
+  - url: https://github.com/mmcguffi/pLannotate/releases/download/v1.2.0/BLAST_dbs.tar.gz
     sha256: 34c7bacb1c73bd75129e16990653f73b3eba7e3cdb3816a55d3989a7601f2137
     folder: BLAST_dbs
 
 requirements:
   host:
-    - python >=3.7
+    - python >=3.9
     - pip
   run:
-    - altair =4.2.2
-    - biopython =1.78
-    - bokeh =2.4.1
-    - click =7.1.2
+    - click
     - curl
-    - blast =2.10.1
-    - diamond =2.0.13
-    - numpy 1.21.5
-    - pandas 1.3.5
-    - python =3.7
-    - ripgrep =13.0.0
+    - numpy
+    - biopython >=1.78
+    - blast >=2.10.1
+    - diamond >=2.0.13
+    - pandas >=1.3.5,<2.0.0
+    - python >=3.9
+    - ripgrep >=13.0.0
+    - tabulate >=0.8.9
+    - trnascan-se >=2.0.7
     - streamlit =1.8.1
-    - tabulate =0.8.9
-    - trnascan-se =2.0.7
+    - altair =4.2.*
+    - bokeh =2.4.1
 
 test:
   commands:
     - plannotate batch --help
 
 about:
-  home: https://github.com/barricklab/pLannotate
-  license: GPL-3
+  home: https://github.com/mmcguffi/pLannotate
+  license: GPL-3.0-or-later
   license_file: LICENSE
   summary: Webserver and command line tool for annotating engineered plasmids
 
diff --git a/recipes/plannotate/patch b/recipes/plannotate/patch
deleted file mode 100644
index d790015158d58..0000000000000
--- a/recipes/plannotate/patch
+++ /dev/null
@@ -1,10 +0,0 @@
---- setup.py	2022-03-30 22:47:50.121160746 +0200
-+++ setup.py	2022-03-30 22:47:50.121160746 +0200
-@@ -57,7 +57,6 @@
-     long_description_content_type=__long_description_content_type__,
-     install_requires=install_requires,
-     tests_require=[].extend(install_requires),
--    python_requires='==3.7.*',
-     packages=find_packages(exclude=['*.test', '*.test.*', 'test.*', 'test']),
-     package_data={__pkg_name__:["data/**/*"]},
-     zip_safe=False,
diff --git a/recipes/plass/build.sh b/recipes/plass/build.sh
index 78b3b14a704a3..b06956020200b 100644
--- a/recipes/plass/build.sh
+++ b/recipes/plass/build.sh
@@ -1,10 +1,18 @@
 #!/bin/bash
 
-git submodule init
-git submodule update
+ARCH_BUILD=""
+case $(uname -m) in
+    x86_64) ARCH_BUILD="-DHAVE_SSE4_1=1" ;;
+    arm64|aarch64) ARCH_BUILD="-DHAVE_ARM8=1" ;;
+esac
+
+if [ -z "${ARCH_BUILD}" ]; then
+    echo "Invalid architecture"
+    exit 1
+fi
 
 mkdir build
 cd build
-cmake -DCMAKE_INSTALL_PREFIX="${PREFIX}" -DHAVE_TESTS=0 -DHAVE_MPI=0 -DHAVE_SSE4_1=1 -DVERSION_OVERRIDE="${PKG_VERSION}" ..
-make -j 2
+cmake -DCMAKE_INSTALL_PREFIX="${PREFIX}" -DHAVE_TESTS=0 -DHAVE_MPI=0 ${ARCH_BUILD} -DVERSION_OVERRIDE="${PKG_VERSION}" ..
+make -j${CPU_COUNT} ${VERBOSE_CM}
 make install
diff --git a/recipes/plass/meta.yaml b/recipes/plass/meta.yaml
index 9625027645199..fe9f348a6774d 100644
--- a/recipes/plass/meta.yaml
+++ b/recipes/plass/meta.yaml
@@ -1,15 +1,18 @@
-{% set version = "4-687d7" %}
+{% set version = "5-cf8933" %}
+{% set sha256 = "04f8f695e925fd842667b1839c960afef93deb05131eba478426f622b97ab6a0" %}
 
 package:
   name: plass 
   version: {{ version|replace("-", ".")  }}
 
 build:
-  number: 5
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('plass', max_pin=None) }}
 
 source:
-  git_url: https://github.com/soedinglab/plass.git
-  git_rev: {{ version }}
+  url: https://github.com/soedinglab/plass/archive/{{ version }}.tar.gz
+  sha256: {{ sha256 }}
 
 requirements:
   build:
@@ -32,16 +35,20 @@ requirements:
 test:
   commands:
     - plass > /dev/null
+    - penguin > /dev/null
 
 about:
   home: https://github.com/soedinglab/plass
   license: GPLv3
-  summary: "Plass (Protein-Level ASSembler) is a software to assemble short read sequencing data on a protein level" 
+  summary: "Plass (Protein-Level ASSembler) and PenguiN (Protein-guided Nucleotide assembler) are methods to assemble short read sequencing data on a protein level to proteins or DNA contigs"
 
 extra:
-  skip-lints:
-    - uses_vcs_url
-    - missing_hash
   identifiers:
     - doi:10.1038/s41592-019-0437-4
+    - doi:10.1101/2024.03.29.587318
     - biotools:plass
+  recipe-maintainers:
+    - milot-mirdita
+    - martin-steinegger
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/plassembler/meta.yaml b/recipes/plassembler/meta.yaml
index 7d089611a562e..7b7683d2378f5 100644
--- a/recipes/plassembler/meta.yaml
+++ b/recipes/plassembler/meta.yaml
@@ -1,27 +1,28 @@
 {% set name = "plassembler" %}
-{% set version = "1.1.0" %}
+{% set version = "1.6.2" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url:    https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: d8949464013e1685ca3a082093d4feb86d42bc3d4ede878e469d1029b1a5a145
-  
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: 1433253aa9fb9305b8eb55ac3a19b46c4064d01147adbda077bc34da82509e46
+
 build:
   number: 0
   noarch: python
   entry_points:
     - plassembler = plassembler:main
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps -vvv"
+  run_exports:
+    - {{ pin_subpackage('plassembler', max_pin='x') }}
 
 requirements:
   host:
     - python >=3.8,<3.10
-    - poetry =1.3
+    - poetry-core >=1.0.0
     - pip
-  
   run:
     - python >=3.8,<3.10
     - flye >=2.9
@@ -38,7 +39,10 @@ requirements:
     - pyyaml >=6.0
     - pandas >=1.4.2
     - biopython >=1.76
-
+    - alive-progress >=3.0.1
+    - requests >=2.25.1
+    - canu ==2.2
+    - dnaapler >=0.4.0
 
 test:
   imports:
@@ -49,6 +53,7 @@ test:
 about:
   home: https://github.com/gbouras13/plassembler
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary: Quickly and accurately assemble plasmids in hybrid sequenced bacterial isolates
 
diff --git a/recipes/platon/meta.yaml b/recipes/platon/meta.yaml
index 1b16a6a7724c3..f789e20bfbf14 100644
--- a/recipes/platon/meta.yaml
+++ b/recipes/platon/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "1.6" %}
-{% set sha256 = "111fee16893cf3f149acc5148db51e8b1586ba878ce04bc727168752b64154d7" %}
+{% set version = "1.7" %}
+{% set sha256 = "51fff36c87b50fc10a26931329f3d83d64dfeb173d12d2ac3409de3577ddb27e" %}
 
 package:
   name: platon
@@ -11,7 +11,7 @@ source:
 
 build:
   noarch: python
-  number: 1
+  number: 0
   script: python -m pip install --no-deps --ignore-installed .
   entry_points:
     - platon = platon.platon:main
diff --git a/recipes/plink2/meta.yaml b/recipes/plink2/meta.yaml
index b74e404149d13..c5f60a7e7a323 100644
--- a/recipes/plink2/meta.yaml
+++ b/recipes/plink2/meta.yaml
@@ -1,15 +1,17 @@
 package:
   name: plink2
-  version: "2.00a3.7"
+  version: "2.00a5.10"
 
 build:
-  number: 4
+  number: 0
+  run_exports:
+      - {{ pin_subpackage('plink2', max_pin=None) }}
 
 source:
-  url: https://s3.amazonaws.com/plink2-assets/alpha3/plink2_linux_x86_64_20221024.zip # [linux]
-  sha256: 15c5b31e0406ecab2e1bdd1548a5824efeb0acc3f694e9086c0b341983d596df     # [linux]
-  url: https://s3.amazonaws.com/plink2-assets/alpha3/plink2_mac_20221024.zip   # [osx]
-  sha256: 14b8bc129d9af0c6f294b3ab0245c421426569e12275607fd019188d685633bc     # [osx]
+  url: https://s3.amazonaws.com/plink2-assets/alpha5/plink2_linux_x86_64_20240105.zip # [linux]
+  sha256: d841fe0b3fcc42d76b2b08bcfeb95e315156b0b883b353807014a69b4867dc47     # [linux]
+  url: https://s3.amazonaws.com/plink2-assets/alpha5/plink2_mac_20240105.zip   # [osx]
+  sha256: 75d78b9a94a570804a9ab130dd0dd29ff8d1c7851c386239505798cd2126c0f9     # [osx]
 
 requirements:
   build:
@@ -17,7 +19,7 @@ requirements:
 
 test:
   commands:
-    - plink2 --help | grep "PLINK v2.00a3.7"
+    - plink2 --help | grep "PLINK v2.00a5.10"
 
 about:
   home: https://www.cog-genomics.org/plink2
diff --git a/recipes/plinkio/COPYING b/recipes/plinkio/COPYING
new file mode 100644
index 0000000000000..d15b0c24134de
--- /dev/null
+++ b/recipes/plinkio/COPYING
@@ -0,0 +1,28 @@
+Copyright (c) 2006, Google Inc.
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are
+met:
+
+    * Redistributions of source code must retain the above copyright
+notice, this list of conditions and the following disclaimer.
+    * Redistributions in binary form must reproduce the above
+copyright notice, this list of conditions and the following disclaimer
+in the documentation and/or other materials provided with the
+distribution.
+    * Neither the name of Google Inc. nor the names of its
+contributors may be used to endorse or promote products derived from
+this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
+A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
+OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
+THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
diff --git a/recipes/plinkio/copyright b/recipes/plinkio/copyright
new file mode 100644
index 0000000000000..8367bab9fac11
--- /dev/null
+++ b/recipes/plinkio/copyright
@@ -0,0 +1,35 @@
+This package was debianized by Google Inc. <opensource@google.com> on
+28 August 2008.
+
+It was downloaded from http://code.google.com/
+
+Upstream Author: opensource@google.com
+
+Copyright (c) 2006, Google Inc.
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are
+met:
+
+    * Redistributions of source code must retain the above copyright
+notice, this list of conditions and the following disclaimer.
+    * Redistributions in binary form must reproduce the above
+copyright notice, this list of conditions and the following disclaimer
+in the documentation and/or other materials provided with the
+distribution.
+    * Neither the name of Google Inc. nor the names of its
+contributors may be used to endorse or promote products derived from
+this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
+A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
+OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
+THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
diff --git a/recipes/plinkio/meta.yaml b/recipes/plinkio/meta.yaml
new file mode 100644
index 0000000000000..b6c9593b78d85
--- /dev/null
+++ b/recipes/plinkio/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "plinkio" %}
+{% set version = "0.9.8" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/plinkio-{{ version }}.tar.gz
+  sha256: 820cd57167ed28158f926ac4b2901b323f8593eb139bec000eeb3b895430011f
+
+build:
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    {{ pin_subpackage('plinkio', max_pin="x.x") }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+  host:
+    - python
+    - pip
+    - setuptools
+  run:
+    - python
+
+test:
+  imports:
+    - plinkio
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/mfranberg/libplinkio
+  summary: A library for parsing plink genotype files
+  license: BSD-3-Clause
+  license_file:
+    - COPYING
+    - COPYING
+    - copyright
+
+extra:
+  recipe-maintainers:
+    - SonofLastPanda
diff --git a/recipes/pmultiqc/meta.yaml b/recipes/pmultiqc/meta.yaml
index 713ef8a0c5bd0..b8c4ab6027c61 100644
--- a/recipes/pmultiqc/meta.yaml
+++ b/recipes/pmultiqc/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pmultiqc" %}
-{% set version = "0.0.19" %}
+{% set version = "0.0.24" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,11 +7,13 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 44fd8087943d8f32c2e613e042b5070ebf6dbe0ae3b20cc2c0c8b7ef7dffaf8d
+  sha256: e3d617cdfc4eab4fa8905dab1f4e575db038471659840bf1431b535d610ae136
 
 build:
   number: 0
   noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
 
 requirements:
@@ -22,9 +24,9 @@ requirements:
     - python >=3.6
     - pytest
     - lxml
-    - multiqc
+    - multiqc ==1.19.0
     - pandas
-    - sdrf-pipelines
+    - sdrf-pipelines >=0.0.18
     - pyteomics
     - pyopenms >2.7
     
diff --git a/recipes/pneumo-typer/build.sh b/recipes/pneumo-typer/build.sh
new file mode 100644
index 0000000000000..6f3abb816792e
--- /dev/null
+++ b/recipes/pneumo-typer/build.sh
@@ -0,0 +1,18 @@
+#!/bin/bash
+set -x -e
+
+RM_DIR=${PREFIX}/share/pneumo-typer
+mkdir -p ${RM_DIR}
+mkdir -p ${PREFIX}/bin
+cp -r pneumo-typer-v1.0.1/* ${RM_DIR}
+cp build_env_setup.sh ${RM_DIR}
+cp conda_build.sh ${RM_DIR}
+cp metadata_conda_debug.yaml ${RM_DIR}
+# Set a executable file for Pneumo-Typer.pl
+cat <<END >>${PREFIX}/bin/pneumo-typer
+#!/bin/bash
+perl ${RM_DIR}/pneumo-typer.pl \$@
+END
+
+
+chmod a+x ${PREFIX}/bin/pneumo-typer
\ No newline at end of file
diff --git a/recipes/pneumo-typer/meta.yaml b/recipes/pneumo-typer/meta.yaml
new file mode 100644
index 0000000000000..b5265377333d4
--- /dev/null
+++ b/recipes/pneumo-typer/meta.yaml
@@ -0,0 +1,48 @@
+{% set name = "pneumo-typer" %}
+{% set version = "1.0.1" %}
+{% set sha256 = "26ff14bc8bd48588e6b2332dfa25fcae2239a89d981a00622b16818a926cf194" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+    url: https://www.microbialgenomic.cn/temp_dir/pneumo-typer-v{{ version }}.tar.gz
+    sha256: {{ sha256 }}
+    
+build:
+  number: 3
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage('pneumo-typer', max_pin="x") }}
+requirements:
+
+  #channels:
+  
+  run:
+    - blast
+    - perl-gd
+    - perl-gd-svg
+    - perl-svg
+    - perl-bioperl-core
+    - prodigal
+    - blat
+
+    #- git
+    
+test:
+  commands:
+    - blastn -h
+    - makeblastdb -h
+    #- blat
+    - pneumo-typer -h
+    - prodigal -h
+
+about:
+  home: 'https://www.microbialgenomic.cn/Pneumo-Typer.html'
+  summary: 'Pneumo-Typer is a comprehensive prediction and visualization of serotype and sequence type for streptococcus pneumoniae using assembled genomes.'
+  license: GNU General Public License v3.0 or any later version (GPL-3.0-or-later)
+
+extra:
+  author:
+    - Xiangyang Li <lixiangyang@fudan.edu.cn>
diff --git a/recipes/poly-qtlseq/build.sh b/recipes/poly-qtlseq/build.sh
new file mode 100644
index 0000000000000..249f40c8f7515
--- /dev/null
+++ b/recipes/poly-qtlseq/build.sh
@@ -0,0 +1,12 @@
+#!/usr/bin/env bash
+
+BINARY_HOME=$PREFIX/bin
+PACKAGE_HOME=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
+
+mkdir -p $BINARY_HOME
+mkdir -p $PACKAGE_HOME
+
+cp -r $SRC_DIR/* $PACKAGE_HOME
+cp $RECIPE_DIR/polyQtlseq.sh $PACKAGE_HOME/polyQtlseq.sh
+chmod +x $PACKAGE_HOME/polyQtlseq.sh
+ln -s $PACKAGE_HOME/polyQtlseq.sh $BINARY_HOME/polyQtlseq
diff --git a/recipes/poly-qtlseq/meta.yaml b/recipes/poly-qtlseq/meta.yaml
new file mode 100644
index 0000000000000..11953504d4dab
--- /dev/null
+++ b/recipes/poly-qtlseq/meta.yaml
@@ -0,0 +1,37 @@
+{% set name = "polyQtlseq" %}
+{% set version = "1.0.1" %}
+{% set sha256 = "bc6a7c3ddac1191b697084a003336aab06d7530538f4a6963d572cd1a6f679bc" %}
+
+package:
+  name: poly-qtlseq
+  version: {{ version }}
+
+source:
+  url: https://github.com/TatsumiMizubayashi/PolyploidQtlSeq/releases/download/v1.0.1/polyQtlseq-1.0.1.zip
+  sha256: {{ sha256 }}
+
+build:
+  noarch: generic
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('poly-qtlseq', max_pin="x") }}
+
+requirements:
+  build:
+  run:
+    - dotnet-runtime >=6,<7
+    - fastp >=0.23
+    - bwa
+    - bcftools >=1.16
+    - samtools >=1.16
+    - snpeff
+
+test:
+  commands:
+    - polyQtlseq -h
+
+about:
+  home: https://github.com/TatsumiMizubayashi/PolyploidQtlSeq
+  license: MIT License
+  summary: PolyploidQtlSeq is a program that extends QTL-seq for polyploid F1 populations.
+
diff --git a/recipes/poly-qtlseq/polyQtlseq.sh b/recipes/poly-qtlseq/polyQtlseq.sh
new file mode 100644
index 0000000000000..0b6d6ada0abdf
--- /dev/null
+++ b/recipes/poly-qtlseq/polyQtlseq.sh
@@ -0,0 +1,6 @@
+#!/usr/bin/env bash
+
+SCRIPT_PATH=$(readlink -f $0)
+SCRIPT_DIR=$(dirname $SCRIPT_PATH)
+
+dotnet $SCRIPT_DIR/PolyploidQtlSeq.dll $@
diff --git a/recipes/polypolish/build.sh b/recipes/polypolish/build.sh
index 8a376961d49d2..d70db500fe871 100644
--- a/recipes/polypolish/build.sh
+++ b/recipes/polypolish/build.sh
@@ -6,6 +6,4 @@ export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="${BUILD_PREFIX}/.cargo"
 
 # build statically linked binary with Rust
 RUST_BACKTRACE=1
-cargo install --verbose --path . --root $PREFIX
-# Copy python scripts into bin dir
-cp scripts/*.{py,pxd} $PREFIX/bin
+cargo install --verbose --path . --root ${PREFIX}
diff --git a/recipes/polypolish/meta.yaml b/recipes/polypolish/meta.yaml
index 112816c703f71..1fb18422206e1 100644
--- a/recipes/polypolish/meta.yaml
+++ b/recipes/polypolish/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.5.0" %}
+{% set version = "0.6.0" %}
 
 package:
   name: polypolish
@@ -6,10 +6,12 @@ package:
 
 source:
   url: https://github.com/rrwick/Polypolish/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 183156093c03094290951f140010b3aef6222a672bf538e9136914178775fb1f
+  sha256: 99ea799352cecf6723b73fb4c5c64dd2091ff1cdab6eef10309e06c642e56855
 
 build:
-  number: 4
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('polypolish', max_pin="x.x") }}
 
 requirements:
   build:
@@ -25,12 +27,18 @@ requirements:
 
 test:
   commands:
-    - polypolish -h
-    - polypolish_insert_filter.py --help
+    - polypolish polish --help
+    - polypolish filter --help
 
 about:
   home: https://github.com/rrwick/Polypolish
-  license: GPLv3
-  license_family: GPL
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
   summary: Polishing genome assemblies with short reads.
+  doc_url: https://github.com/rrwick/Polypolish/wiki
+
+extra:
+  identifiers:
+    - doi:10.1371/journal.pcbi.1009802
+    - biotools:polypolish
diff --git a/recipes/pomoxis/meta.yaml b/recipes/pomoxis/meta.yaml
index 2b2455b6e48e7..ae831a0fd1025 100644
--- a/recipes/pomoxis/meta.yaml
+++ b/recipes/pomoxis/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pomoxis" %}
-{% set version = "0.3.13" %}
+{% set version = "0.3.15" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 732e3c641b4d6c542b62f6df8bfd0e7b49e1a1cb351f644b3a98c37b4ec026d3
+  sha256: e54f7f2960290121676dda992b326341986b093e5da4586203b8b613cc356d2b
 
 build:
   number: 0
@@ -22,14 +22,19 @@ build:
     - long_fastx = pomoxis.util:extract_long_reads
     - pomoxis_path = pomoxis:show_prog_path
     - qscores_from_summary = pomoxis.qscores_from_summary:main
+    - reverse_bed = pomoxis.util:reverse_bed
     - split_fastx = pomoxis.util:split_fastx_cmdline
     - stats_from_bam = pomoxis.stats_from_bam:main
     - subsample_bam = pomoxis.subsample_bam:main
+    - filter_bam = pomoxis.filter_bam:main
     - summary_from_stats = pomoxis.summary_from_stats:main
+    - tag_bam = pomoxis.util:tag_bam
     - trim_alignments = pomoxis.trim_alignments:main
     - ref_seqs_from_bam = pomoxis.ref_seqs_from_bam:main
     - find_indels = pomoxis.find_indels:main
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vvv "
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('pomoxis', max_pin="x.x") }}
 
 requirements:
   host:
@@ -79,12 +84,12 @@ test:
 
 about:
   home: https://github.com/nanoporetech/pomoxis
-  license: Mozilla Public License 2.0
+  license: MPL-2.0
   license_family: OTHER
   license_file: LICENSE.md
   summary: Assembly, consensensus, and analysis tools by ONT research
   doc_url: https://nanoporetech.github.io/pomoxis/index.html
-  dev_url: https://github.com/nanoporetech/pomoxis 
+  dev_url: https://github.com/nanoporetech/pomoxis
 
 extra:
   recipe-maintainers:
diff --git a/recipes/popdel/build.sh b/recipes/popdel/build.sh
index 883edc14d8a69..64407b7894404 100644
--- a/recipes/popdel/build.sh
+++ b/recipes/popdel/build.sh
@@ -1,4 +1,4 @@
 #!/bin/sh
-make CXX=${CXX}
+make CXX=${CXX} -j ${CPU_COUNT}
 mkdir -p ${PREFIX}/bin
 cp popdel ${PREFIX}/bin
diff --git a/recipes/popdel/meta.yaml b/recipes/popdel/meta.yaml
index 31750f441b621..b73c3594094cf 100644
--- a/recipes/popdel/meta.yaml
+++ b/recipes/popdel/meta.yaml
@@ -7,7 +7,9 @@ source:
   sha256: c4f9dd1838379a9bcb3545da3a8d2d779f85212528a523215df9d2dc505fe515
 
 build:
-  number: 6
+  number: 7
+  run_exports:
+    - {{ pin_subpackage('popdel', max_pin='x') }}
 
 requirements:
   build:
@@ -28,3 +30,7 @@ about:
   license: GPL-3.0
   license_file: LICENSE
   summary: Fast structural deletion calling on population-scale short read paired-end germline WGS data.
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/poppunk/meta.yaml b/recipes/poppunk/meta.yaml
index aa2b9c61d2062..e596450103070 100644
--- a/recipes/poppunk/meta.yaml
+++ b/recipes/poppunk/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "2.6.0" %}
+{% set version = "2.6.5" %}
 {% set name = "PopPUNK" %}
 
 package:
@@ -7,10 +7,10 @@ package:
 
 source:
   url: https://github.com/bacpop/{{ name|lower }}/archive/v{{ version }}.tar.gz
-  sha256: 9060e0f09e99c1cd34662fb4b6c4b28e4344c0e3d00e983a7be8b60591ad92ec
+  sha256: d587b77c6b38e73035f9bd1b5cfcea9a048714112391a77139bb52e0a160b968
 
 build:
-  number: 1
+  number: 0
   skip: true  # [py < 38]
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
   entry_points:
@@ -22,6 +22,8 @@ build:
     - poppunk_mandrake = PopPUNK.mandrake:main
     - poppunk_info = PopPUNK.info:main
     - poppunk_lineages_from_strains = PopPUNK.lineages:main
+  run_exports:
+    - {{ pin_subpackage("poppunk", max_pin="x") }}
 
 requirements:
   build:
diff --git a/recipes/poseidon-trident/meta.yaml b/recipes/poseidon-trident/meta.yaml
index d6a03cd6b45cb..fd463710cff8c 100644
--- a/recipes/poseidon-trident/meta.yaml
+++ b/recipes/poseidon-trident/meta.yaml
@@ -1,13 +1,13 @@
-{% set version = "1.2.0.0" %}
+{% set version = "1.5.0.1" %}
 package:
   name: poseidon-trident
   version: {{ version }}
 
 source:
   - url: https://github.com/poseidon-framework/poseidon-hs/releases/download/v{{ version }}/trident-conda-linux # [linux]
-    md5: ff05175059360f84ea26cb7faa2da416 # [linux]
-  - url: https://github.com/poseidon-framework/poseidon-hs/releases/download/v{{ version }}/trident-macOS # [osx]
-    md5: 87054464317f891fe7c0c0e0e9665181 # [osx]
+    md5: 71815ecd30b082610ca738130f04c933 # [linux]
+  - url: https://github.com/poseidon-framework/poseidon-hs/releases/download/v{{ version }}/trident-macOS-X64 # [osx]
+    md5: c7ce4930a046ee832b37558ed5799c8b # [osx]
 
 build:
   number: 0 
@@ -15,6 +15,8 @@ build:
     - "mkdir -p $PREFIX/bin"
     - "mv trident* $PREFIX/bin/trident"
     - "chmod u+x $PREFIX/bin/trident"
+  run_exports:
+    - {{ pin_subpackage("poseidon-trident", max_pin=None) }}
 
 requirements:
   build:
diff --git a/recipes/poseidon-xerxes/meta.yaml b/recipes/poseidon-xerxes/meta.yaml
index 940872473e784..efb89c986c028 100644
--- a/recipes/poseidon-xerxes/meta.yaml
+++ b/recipes/poseidon-xerxes/meta.yaml
@@ -1,20 +1,22 @@
-{% set version = "0.1.2.2" %}
+{% set version = "1.0.1.1" %}
 package:
   name: poseidon-xerxes
   version: {{ version }}
 
 source:
-  - url: https://github.com/poseidon-framework/poseidon-analysis-hs/releases/download/v{{ version }}/xerxes-linux # [linux]
-    md5: d715cc52e9c0e8dcdf3d8cce32a702db # [linux]
-  - url: https://github.com/poseidon-framework/poseidon-analysis-hs/releases/download/v{{ version }}/xerxes-macOS # [osx]
-    md5: 9d842533351669f64c4e4c88c45e6393 # [osx]
+  - url: https://github.com/poseidon-framework/poseidon-analysis-hs/releases/download/v{{ version }}/xerxes-conda-linux # [linux]
+    md5: c1165839313a768ac12d1c8dbe7b2f0a # [linux]
+  - url: https://github.com/poseidon-framework/poseidon-analysis-hs/releases/download/v{{ version }}/xerxes-macOS-X64 # [osx]
+    md5: f101c7d0448b486b86edc259c7838a92 # [osx]
 
 build:
-  number: 2
+  number: 0
   script:
     - "mkdir -p $PREFIX/bin"
     - "mv xerxes* $PREFIX/bin/xerxes"
     - "chmod u+x $PREFIX/bin/xerxes"
+  run_exports:
+    - {{ pin_subpackage("poseidon-xerxes", max_pin=None) }}
 
 requirements:
   build:
@@ -29,9 +31,9 @@ requirements:
 
 test:
   commands:
-     - xerxes --version
+      - xerxes --version
 
 about:
-  home: https://poseidon-framework.github.io/#/
+  home: https://www.poseidon-adna.org/#/
   license: MIT
   summary: "A tool (xerxes) to analyse genotype databases formatted using Poseidon."
diff --git a/recipes/pourrna/meta.yaml b/recipes/pourrna/meta.yaml
index 993b810c88dc6..4313accff6e9c 100644
--- a/recipes/pourrna/meta.yaml
+++ b/recipes/pourrna/meta.yaml
@@ -11,7 +11,9 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 4
+  number: 5
+  run_exports:
+    - {{ pin_subpackage( name, max_pin="x.x") }}
 
 requirements:
   build:
diff --git a/recipes/ppanggolin/meta.yaml b/recipes/ppanggolin/meta.yaml
index 4e0712795ef53..8d196cd333118 100644
--- a/recipes/ppanggolin/meta.yaml
+++ b/recipes/ppanggolin/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.2.105" %}
+{% set version = "2.0.5" %}
 
 package:
   name: ppanggolin
@@ -6,36 +6,39 @@ package:
 
 source:
   url: https://github.com/labgem/PPanGGOLiN/archive/{{ version }}.tar.gz
-  sha256: 410a51029302d9aae534846fc5dde9c01c17aa63ae91c9d48db47e399d2d2a47
+  sha256: a0eecbb3f66df8d2df5c2b37c25696c264cd3812386e942314748a8800ecc52f
 
 build:
-  number: 1
+  number: 0
   skip: True  # [py<37]
+  run_exports:
+    - {{ pin_subpackage("ppanggolin", max_pin="x") }}
 
 requirements:
   build:
     - {{ compiler('c') }}
+
   host:
     - python
     - pip
-    - cython
+    - cython <3
   run:
     - python
     - tqdm =4
     - pytables =3
-    - prodigal =2.6
+    - pyrodigal =3
     - aragorn =1.2
     - infernal =1.1
     - mmseqs2
-    - networkx =2
+    - networkx =3
     - scipy =1
-    - plotly =4
+    - plotly =5
     - gmpy2 =2
     - numpy =1
-    - pandas =1
+    - pandas =2
     - colorlover =0.3
     - mafft
-    - bokeh =2
+    - bokeh =3
 
 test:
   commands:
@@ -48,6 +51,7 @@ test:
 about:
   license: CeCiLL 2.1
   home: https://github.com/labgem/PPanGGOLiN
+  doc_url: https://ppanggolin.readthedocs.io
   summary: "PPanGGOLiN: Depicting microbial species diversity via a Partitioned PanGenome Graph"
 
 extra:
diff --git a/recipes/ppx/meta.yaml b/recipes/ppx/meta.yaml
index 645d249430539..468bdacc12df0 100644
--- a/recipes/ppx/meta.yaml
+++ b/recipes/ppx/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "ppx" %}
-{% set version = "1.3.0" %}
+{% set version = "1.4.4" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,22 +7,24 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: a94f94071fca29e98fc13e4a306fc0c4c1deee2306dea9680e8a292a5c8b4376
+  sha256: 97eacbc9272faf98ab2fa16f0949eb55bd0eab5cecf9e8381321e754808e2cd8
 
 build:
   number: 0
   noarch: python
   entry_points:
     - ppx = ppx.ppx:main
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('ppx', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - python >=3.7
+    - python >=3.10
     - setuptools_scm >=6.4.2
   run:
-    - python >=3.7
+    - python >=3.10
     - requests >=2.23.0
     - tqdm >=4.60.0
     - cloudpathlib >=0.7.1
@@ -36,6 +38,7 @@ test:
 about:
   home: "https://github.com/wfondrie/ppx"
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary: "A Python interface to proteomics data repositories"
   doc_url: "https://ppx.readthedocs.io"
diff --git a/recipes/prank/LICENSE.md b/recipes/prank/LICENSE.md
new file mode 100644
index 0000000000000..51bbbe9e109b1
--- /dev/null
+++ b/recipes/prank/LICENSE.md
@@ -0,0 +1,619 @@
+### GNU GENERAL PUBLIC LICENSE
+
+Version 3, 29 June 2007
+
+Copyright (C) 2007 Free Software Foundation, Inc.
+<https://fsf.org/>
+
+Everyone is permitted to copy and distribute verbatim copies of this
+license document, but changing it is not allowed.
+
+### Preamble
+
+The GNU General Public License is a free, copyleft license for
+software and other kinds of works.
+
+The licenses for most software and other practical works are designed
+to take away your freedom to share and change the works. By contrast,
+the GNU General Public License is intended to guarantee your freedom
+to share and change all versions of a program--to make sure it remains
+free software for all its users. We, the Free Software Foundation, use
+the GNU General Public License for most of our software; it applies
+also to any other work released this way by its authors. You can apply
+it to your programs, too.
+
+When we speak of free software, we are referring to freedom, not
+price. Our General Public Licenses are designed to make sure that you
+have the freedom to distribute copies of free software (and charge for
+them if you wish), that you receive source code or can get it if you
+want it, that you can change the software or use pieces of it in new
+free programs, and that you know you can do these things.
+
+To protect your rights, we need to prevent others from denying you
+these rights or asking you to surrender the rights. Therefore, you
+have certain responsibilities if you distribute copies of the
+software, or if you modify it: responsibilities to respect the freedom
+of others.
+
+For example, if you distribute copies of such a program, whether
+gratis or for a fee, you must pass on to the recipients the same
+freedoms that you received. You must make sure that they, too, receive
+or can get the source code. And you must show them these terms so they
+know their rights.
+
+Developers that use the GNU GPL protect your rights with two steps:
+(1) assert copyright on the software, and (2) offer you this License
+giving you legal permission to copy, distribute and/or modify it.
+
+For the developers' and authors' protection, the GPL clearly explains
+that there is no warranty for this free software. For both users' and
+authors' sake, the GPL requires that modified versions be marked as
+changed, so that their problems will not be attributed erroneously to
+authors of previous versions.
+
+Some devices are designed to deny users access to install or run
+modified versions of the software inside them, although the
+manufacturer can do so. This is fundamentally incompatible with the
+aim of protecting users' freedom to change the software. The
+systematic pattern of such abuse occurs in the area of products for
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+Therefore, we have designed this version of the GPL to prohibit the
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+Finally, every program is threatened constantly by software patents.
+States should not allow patents to restrict development and use of
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+to avoid the special danger that patents applied to a free program
+could make it effectively proprietary. To prevent this, the GPL
+assures that patents cannot be used to render the program non-free.
+
+The precise terms and conditions for copying, distribution and
+modification follow.
+
+### TERMS AND CONDITIONS
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+    conveying of source, or (2) access to copy the Corresponding
+    Source from a network server at no charge.
+-   c) Convey individual copies of the object code with a copy of the
+    written offer to provide the Corresponding Source. This
+    alternative is allowed only occasionally and noncommercially, and
+    only if you received the object code with such an offer, in accord
+    with subsection 6b.
+-   d) Convey the object code by offering access from a designated
+    place (gratis or for a charge), and offer equivalent access to the
+    Corresponding Source in the same way through the same place at no
+    further charge. You need not require recipients to copy the
+    Corresponding Source along with the object code. If the place to
+    copy the object code is a network server, the Corresponding Source
+    may be on a different server (operated by you or a third party)
+    that supports equivalent copying facilities, provided you maintain
+    clear directions next to the object code saying where to find the
+    Corresponding Source. Regardless of what server hosts the
+    Corresponding Source, you remain obligated to ensure that it is
+    available for as long as needed to satisfy these requirements.
+-   e) Convey the object code using peer-to-peer transmission,
+    provided you inform other peers where the object code and
+    Corresponding Source of the work are being offered to the general
+    public at no charge under subsection 6d.
+
+A separable portion of the object code, whose source code is excluded
+from the Corresponding Source as a System Library, need not be
+included in conveying the object code work.
+
+A "User Product" is either (1) a "consumer product", which means any
+tangible personal property which is normally used for personal,
+family, or household purposes, or (2) anything designed or sold for
+incorporation into a dwelling. In determining whether a product is a
+consumer product, doubtful cases shall be resolved in favor of
+coverage. For a particular product received by a particular user,
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+product, regardless of the status of the particular user or of the way
+in which the particular user actually uses, or expects or is expected
+to use, the product. A product is a consumer product regardless of
+whether the product has substantial commercial, industrial or
+non-consumer uses, unless such uses represent the only significant
+mode of use of the product.
+
+"Installation Information" for a User Product means any methods,
+procedures, authorization keys, or other information required to
+install and execute modified versions of a covered work in that User
+Product from a modified version of its Corresponding Source. The
+information must suffice to ensure that the continued functioning of
+the modified object code is in no case prevented or interfered with
+solely because modification has been made.
+
+If you convey an object code work under this section in, or with, or
+specifically for use in, a User Product, and the conveying occurs as
+part of a transaction in which the right of possession and use of the
+User Product is transferred to the recipient in perpetuity or for a
+fixed term (regardless of how the transaction is characterized), the
+Corresponding Source conveyed under this section must be accompanied
+by the Installation Information. But this requirement does not apply
+if neither you nor any third party retains the ability to install
+modified object code on the User Product (for example, the work has
+been installed in ROM).
+
+The requirement to provide Installation Information does not include a
+requirement to continue to provide support service, warranty, or
+updates for a work that has been modified or installed by the
+recipient, or for the User Product in which it has been modified or
+installed. Access to a network may be denied when the modification
+itself materially and adversely affects the operation of the network
+or violates the rules and protocols for communication across the
+network.
+
+Corresponding Source conveyed, and Installation Information provided,
+in accord with this section must be in a format that is publicly
+documented (and with an implementation available to the public in
+source code form), and must require no special password or key for
+unpacking, reading or copying.
+
+#### 7. Additional Terms.
+
+"Additional permissions" are terms that supplement the terms of this
+License by making exceptions from one or more of its conditions.
+Additional permissions that are applicable to the entire Program shall
+be treated as though they were included in this License, to the extent
+that they are valid under applicable law. If additional permissions
+apply only to part of the Program, that part may be used separately
+under those permissions, but the entire Program remains governed by
+this License without regard to the additional permissions.
+
+When you convey a copy of a covered work, you may at your option
+remove any additional permissions from that copy, or from any part of
+it. (Additional permissions may be written to require their own
+removal in certain cases when you modify the work.) You may place
+additional permissions on material, added by you to a covered work,
+for which you have or can give appropriate copyright permission.
+
+Notwithstanding any other provision of this License, for material you
+add to a covered work, you may (if authorized by the copyright holders
+of that material) supplement the terms of this License with terms:
+
+-   a) Disclaiming warranty or limiting liability differently from the
+    terms of sections 15 and 16 of this License; or
+-   b) Requiring preservation of specified reasonable legal notices or
+    author attributions in that material or in the Appropriate Legal
+    Notices displayed by works containing it; or
+-   c) Prohibiting misrepresentation of the origin of that material,
+    or requiring that modified versions of such material be marked in
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+-   d) Limiting the use for publicity purposes of names of licensors
+    or authors of the material; or
+-   e) Declining to grant rights under trademark law for use of some
+    trade names, trademarks, or service marks; or
+-   f) Requiring indemnification of licensors and authors of that
+    material by anyone who conveys the material (or modified versions
+    of it) with contractual assumptions of liability to the recipient,
+    for any liability that these contractual assumptions directly
+    impose on those licensors and authors.
+
+All other non-permissive additional terms are considered "further
+restrictions" within the meaning of section 10. If the Program as you
+received it, or any part of it, contains a notice stating that it is
+governed by this License along with a term that is a further
+restriction, you may remove that term. If a license document contains
+a further restriction but permits relicensing or conveying under this
+License, you may add to a covered work material governed by the terms
+of that license document, provided that the further restriction does
+not survive such relicensing or conveying.
+
+If you add terms to a covered work in accord with this section, you
+must place, in the relevant source files, a statement of the
+additional terms that apply to those files, or a notice indicating
+where to find the applicable terms.
+
+Additional terms, permissive or non-permissive, may be stated in the
+form of a separately written license, or stated as exceptions; the
+above requirements apply either way.
+
+#### 8. Termination.
+
+You may not propagate or modify a covered work except as expressly
+provided under this License. Any attempt otherwise to propagate or
+modify it is void, and will automatically terminate your rights under
+this License (including any patent licenses granted under the third
+paragraph of section 11).
+
+However, if you cease all violation of this License, then your license
+from a particular copyright holder is reinstated (a) provisionally,
+unless and until the copyright holder explicitly and finally
+terminates your license, and (b) permanently, if the copyright holder
+fails to notify you of the violation by some reasonable means prior to
+60 days after the cessation.
+
+Moreover, your license from a particular copyright holder is
+reinstated permanently if the copyright holder notifies you of the
+violation by some reasonable means, this is the first time you have
+received notice of violation of this License (for any work) from that
+copyright holder, and you cure the violation prior to 30 days after
+your receipt of the notice.
+
+Termination of your rights under this section does not terminate the
+licenses of parties who have received copies or rights from you under
+this License. If your rights have been terminated and not permanently
+reinstated, you do not qualify to receive new licenses for the same
+material under section 10.
+
+#### 9. Acceptance Not Required for Having Copies.
+
+You are not required to accept this License in order to receive or run
+a copy of the Program. Ancillary propagation of a covered work
+occurring solely as a consequence of using peer-to-peer transmission
+to receive a copy likewise does not require acceptance. However,
+nothing other than this License grants you permission to propagate or
+modify any covered work. These actions infringe copyright if you do
+not accept this License. Therefore, by modifying or propagating a
+covered work, you indicate your acceptance of this License to do so.
+
+#### 10. Automatic Licensing of Downstream Recipients.
+
+Each time you convey a covered work, the recipient automatically
+receives a license from the original licensors, to run, modify and
+propagate that work, subject to this License. You are not responsible
+for enforcing compliance by third parties with this License.
+
+An "entity transaction" is a transaction transferring control of an
+organization, or substantially all assets of one, or subdividing an
+organization, or merging organizations. If propagation of a covered
+work results from an entity transaction, each party to that
+transaction who receives a copy of the work also receives whatever
+licenses to the work the party's predecessor in interest had or could
+give under the previous paragraph, plus a right to possession of the
+Corresponding Source of the work from the predecessor in interest, if
+the predecessor has it or can get it with reasonable efforts.
+
+You may not impose any further restrictions on the exercise of the
+rights granted or affirmed under this License. For example, you may
+not impose a license fee, royalty, or other charge for exercise of
+rights granted under this License, and you may not initiate litigation
+(including a cross-claim or counterclaim in a lawsuit) alleging that
+any patent claim is infringed by making, using, selling, offering for
+sale, or importing the Program or any portion of it.
+
+#### 11. Patents.
+
+A "contributor" is a copyright holder who authorizes use under this
+License of the Program or a work on which the Program is based. The
+work thus licensed is called the contributor's "contributor version".
+
+A contributor's "essential patent claims" are all patent claims owned
+or controlled by the contributor, whether already acquired or
+hereafter acquired, that would be infringed by some manner, permitted
+by this License, of making, using, or selling its contributor version,
+but do not include claims that would be infringed only as a
+consequence of further modification of the contributor version. For
+purposes of this definition, "control" includes the right to grant
+patent sublicenses in a manner consistent with the requirements of
+this License.
+
+Each contributor grants you a non-exclusive, worldwide, royalty-free
+patent license under the contributor's essential patent claims, to
+make, use, sell, offer for sale, import and otherwise run, modify and
+propagate the contents of its contributor version.
+
+In the following three paragraphs, a "patent license" is any express
+agreement or commitment, however denominated, not to enforce a patent
+(such as an express permission to practice a patent or covenant not to
+sue for patent infringement). To "grant" such a patent license to a
+party means to make such an agreement or commitment not to enforce a
+patent against the party.
+
+If you convey a covered work, knowingly relying on a patent license,
+and the Corresponding Source of the work is not available for anyone
+to copy, free of charge and under the terms of this License, through a
+publicly available network server or other readily accessible means,
+then you must either (1) cause the Corresponding Source to be so
+available, or (2) arrange to deprive yourself of the benefit of the
+patent license for this particular work, or (3) arrange, in a manner
+consistent with the requirements of this License, to extend the patent
+license to downstream recipients. "Knowingly relying" means you have
+actual knowledge that, but for the patent license, your conveying the
+covered work in a country, or your recipient's use of the covered work
+in a country, would infringe one or more identifiable patents in that
+country that you have reason to believe are valid.
+
+If, pursuant to or in connection with a single transaction or
+arrangement, you convey, or propagate by procuring conveyance of, a
+covered work, and grant a patent license to some of the parties
+receiving the covered work authorizing them to use, propagate, modify
+or convey a specific copy of the covered work, then the patent license
+you grant is automatically extended to all recipients of the covered
+work and works based on it.
+
+A patent license is "discriminatory" if it does not include within the
+scope of its coverage, prohibits the exercise of, or is conditioned on
+the non-exercise of one or more of the rights that are specifically
+granted under this License. You may not convey a covered work if you
+are a party to an arrangement with a third party that is in the
+business of distributing software, under which you make payment to the
+third party based on the extent of your activity of conveying the
+work, and under which the third party grants, to any of the parties
+who would receive the covered work from you, a discriminatory patent
+license (a) in connection with copies of the covered work conveyed by
+you (or copies made from those copies), or (b) primarily for and in
+connection with specific products or compilations that contain the
+covered work, unless you entered into that arrangement, or that patent
+license was granted, prior to 28 March 2007.
+
+Nothing in this License shall be construed as excluding or limiting
+any implied license or other defenses to infringement that may
+otherwise be available to you under applicable patent law.
+
+#### 12. No Surrender of Others' Freedom.
+
+If conditions are imposed on you (whether by court order, agreement or
+otherwise) that contradict the conditions of this License, they do not
+excuse you from the conditions of this License. If you cannot convey a
+covered work so as to satisfy simultaneously your obligations under
+this License and any other pertinent obligations, then as a
+consequence you may not convey it at all. For example, if you agree to
+terms that obligate you to collect a royalty for further conveying
+from those to whom you convey the Program, the only way you could
+satisfy both those terms and this License would be to refrain entirely
+from conveying the Program.
+
+#### 13. Use with the GNU Affero General Public License.
+
+Notwithstanding any other provision of this License, you have
+permission to link or combine any covered work with a work licensed
+under version 3 of the GNU Affero General Public License into a single
+combined work, and to convey the resulting work. The terms of this
+License will continue to apply to the part which is the covered work,
+but the special requirements of the GNU Affero General Public License,
+section 13, concerning interaction through a network will apply to the
+combination as such.
+
+#### 14. Revised Versions of this License.
+
+The Free Software Foundation may publish revised and/or new versions
+of the GNU General Public License from time to time. Such new versions
+will be similar in spirit to the present version, but may differ in
+detail to address new problems or concerns.
+
+Each version is given a distinguishing version number. If the Program
+specifies that a certain numbered version of the GNU General Public
+License "or any later version" applies to it, you have the option of
+following the terms and conditions either of that numbered version or
+of any later version published by the Free Software Foundation. If the
+Program does not specify a version number of the GNU General Public
+License, you may choose any version ever published by the Free
+Software Foundation.
+
+If the Program specifies that a proxy can decide which future versions
+of the GNU General Public License can be used, that proxy's public
+statement of acceptance of a version permanently authorizes you to
+choose that version for the Program.
+
+Later license versions may give you additional or different
+permissions. However, no additional obligations are imposed on any
+author or copyright holder as a result of your choosing to follow a
+later version.
+
+#### 15. Disclaimer of Warranty.
+
+THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
+APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
+HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT
+WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT
+LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
+A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND
+PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE
+DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR
+CORRECTION.
+
+#### 16. Limitation of Liability.
+
+IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
+WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR
+CONVEYS THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,
+INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES
+ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT
+NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR
+LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM
+TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER
+PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES.
+
+#### 17. Interpretation of Sections 15 and 16.
+
+If the disclaimer of warranty and limitation of liability provided
+above cannot be given local legal effect according to their terms,
+reviewing courts shall apply local law that most closely approximates
+an absolute waiver of all civil liability in connection with the
+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
+END OF TERMS AND CONDITIONS
diff --git a/recipes/prank/meta.yaml b/recipes/prank/meta.yaml
index 5960392c08e83..9e752eaedf3f2 100644
--- a/recipes/prank/meta.yaml
+++ b/recipes/prank/meta.yaml
@@ -1,19 +1,20 @@
 package:
   name: prank
-  version: "v.170427"
+  version: "170427"
 
 source:
   url: http://wasabiapp.org/download/prank/prank.source.170427.tgz
   sha256: 623eb5e9b5cb0be1f49c3bf715e5fabceb1059b21168437264bdcd5c587a8859
 
 build:
-  number: 7
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('prank', max_pin="x.x") }}
 
 requirements:
   build:
     - make
     - {{ compiler('cxx') }}
-  run:
 
 test:
   commands:
@@ -21,10 +22,14 @@ test:
 
 about:
   home: http://wasabiapp.org/software/prank/
-  license: GPL-3
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE.md
   summary: PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences.
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:prank
     - doi:10.1007/978-1-62703-646-7_10
diff --git a/recipes/preseq/meta.yaml b/recipes/preseq/meta.yaml
index b6726b24549a3..462b966c1500e 100644
--- a/recipes/preseq/meta.yaml
+++ b/recipes/preseq/meta.yaml
@@ -5,7 +5,9 @@ package:
   version: {{ version }}
 
 build:
-  number: 5
+  number: 6
+  run_exports:
+    - {{ pin_subpackage("preseq", max_pin="x.x") }}
 
 source:
   url: https://github.com/smithlabcode/preseq/releases/download/v{{ version }}/preseq-{{ version }}.tar.gz
@@ -38,5 +40,7 @@ test:
     - to-mr
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   recipe-maintainers:
     - andrewdavidsmith
diff --git a/recipes/presto/build.sh b/recipes/presto/build.sh
deleted file mode 100755
index 4899c226c8dd0..0000000000000
--- a/recipes/presto/build.sh
+++ /dev/null
@@ -1,9 +0,0 @@
-#!/bin/bash
-
-$PYTHON setup.py install --single-version-externally-managed --record=record.txt
-
-# Add more build steps here, if they are necessary.
-
-# See
-# http://docs.continuum.io/conda/build.html
-# for a list of environment variables that are set during the build process.
diff --git a/recipes/presto/meta.yaml b/recipes/presto/meta.yaml
index 8db5c41676eea..e3fdd0365f366 100644
--- a/recipes/presto/meta.yaml
+++ b/recipes/presto/meta.yaml
@@ -1,19 +1,26 @@
+{% set name = "presto" %}
+{% set version = "0.7.2" %}
+{% set sha256 = "b4f4b34413af4207eb2052316d31d7bc2067b864286498476d89013ad5423dd9" %}
+
 package:
-  name: presto
-  version: "0.7.1"
+  name: {{ name }}
+  version: {{ version }}
 
 source:
-  url: https://files.pythonhosted.org/packages/ca/12/09123b431758827082924054e03277207067853c6af19803f67d1ad1dea9/presto-0.7.1.tar.gz
-  sha256: 8b5787b3a3206fda5e5cd0fd1804a6c0ecb8821f9de2b78d9a5e5a5a31ba43e9
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/presto-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
 
 build:
   number: 0
   noarch: python
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  run_exports:
+    - {{ pin_subpackage('presto', max_pin="x.x") }}
 
 requirements:
   host:
     - python >=3
-    - setuptools
+    - pip
   run:
     - python >=3
     - numpy >=1.8
@@ -23,6 +30,7 @@ requirements:
     - blast >=2.5
     - muscle >=3.8
     - vsearch >=2.3.2
+    - packaging
 
 test:
   commands:
@@ -41,7 +49,12 @@ test:
     - SplitSeq.py --version
 
 about:
-  home: https://presto.readthedocs.io
-  license: AGPL-3.0
+  home: https://bitbucket.org/kleinstein/presto
+  license: AGPL-3.0-or-later
   summary: 'A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.'
   license_family: AGPL
+  doc_url: https://presto.readthedocs.io
+
+extra:
+  identifier:
+    - doi:10.1093/bioinformatics/btu138
diff --git a/recipes/primer3-py/build.sh b/recipes/primer3-py/build.sh
index 35767eda50d14..b1f1ebe131016 100755
--- a/recipes/primer3-py/build.sh
+++ b/recipes/primer3-py/build.sh
@@ -1,4 +1,4 @@
 #!/bin/bash
 
 sed -i.bak '/^CC /d' primer3/src/libprimer3/Makefile
-python -m pip install . -vv
+$PYTHON -m pip install . --use-pep517 --no-deps --no-build-isolation -vvv
diff --git a/recipes/primer3-py/meta.yaml b/recipes/primer3-py/meta.yaml
index 3019796d42b64..f9e5b1886a1c9 100644
--- a/recipes/primer3-py/meta.yaml
+++ b/recipes/primer3-py/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "primer3-py" %}
-{% set version = "2.0.0" %}
+{% set version = "2.0.3" %}
 
 package:
   name: {{ name|lower }}
@@ -7,38 +7,40 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/primer3-py-{{ version }}.tar.gz
-  sha256: 3c1b217cd72b1d9bd0fce4aee45d7f5e3f7b1e6c6889cbdc5ea97bdc72e009ef
+  sha256: 1ec6ce99ea149b1c82361c654a0eab824e698ce32d5f9ed2dd8f8f37564b3f5f
 
 build:
-  number: 0
+  number: 1
+  skip: True  # [py < 38]
+  run_exports:
+    - {{ pin_subpackage('primer3-py', max_pin="x") }}
 
 requirements:
   build:
     - {{ compiler('c') }}
     - make
   host:
-    - python >=3.8
+    - python
     - cython
     - setuptools >=65.6.3
     - pip
   run:
-    - python >=3.8
+    - python
 
 test:
   imports:
     - primer3
-  commands:
-    - pip check
-  requires:
-    - pip
 
 about:
   home: https://github.com/libnano/primer3-py
   summary: Python bindings for Primer3
   license: GPL-2.0-only
-  license_family: GPL
+  license_family: GPL2
   license_file: LICENSE
+  doc_url: https://libnano.github.io/primer3-py/
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   recipe-maintainers:
     - bgruening
diff --git a/recipes/primerforge/meta.yaml b/recipes/primerforge/meta.yaml
new file mode 100644
index 0000000000000..404d73f1ffd56
--- /dev/null
+++ b/recipes/primerforge/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "primerForge" %}
+{% set version = "1.0.2" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://github.com/dr-joe-wirth/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: b834ad463b39eb68634ef7869881a8aec57181d4e372963f933bf52ddc40b501
+
+build:
+  number: 0
+  noarch: python
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  entry_points:
+    - primerForge=bin.main:main
+  run_exports:
+    - {{ pin_subpackage('primerforge', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.11
+    - pip
+  run:
+    - python >=3.11
+    - biopython ==1.81
+    - matplotlib-base >=3.7
+    - numpy
+    - primer3-py >=2.0
+    - scipy >=1.10
+
+test:
+  commands:
+    - primerForge --help
+    - primerForge --check_install
+
+about:
+  home: https://github.com/dr-joe-wirth/{{ name }}
+  license: Apache-2.0
+  license_family: Apache
+  license_file: LICENSE
+  summary: "primerForge: software to identify primers that can be used to distinguish genomes"
+
+extra:
+  recipe-maintainers:
+    - dr-joe-wirth
diff --git a/recipes/primers/0001-directly-write-requirements-in-setup.py.patch b/recipes/primers/0001-directly-write-requirements-in-setup.py.patch
new file mode 100644
index 0000000000000..bdbba3ec8a854
--- /dev/null
+++ b/recipes/primers/0001-directly-write-requirements-in-setup.py.patch
@@ -0,0 +1,26 @@
+From d1878dbc60b3e4db625f2b3b320c031fe8bfabb6 Mon Sep 17 00:00:00 2001
+From: tpob <tpob@tpob.xyz>
+Date: Mon, 8 Apr 2024 19:39:30 +0800
+Subject: [PATCH] directly write requirements in setup.py
+
+---
+ setup.py | 3 +--
+ 1 file changed, 1 insertion(+), 2 deletions(-)
+
+diff --git a/setup.py b/setup.py
+index 2750b76..94ac0bf 100644
+--- a/setup.py
++++ b/setup.py
+@@ -7,8 +7,7 @@ from setuptools import setup, find_packages
+ with open("README.md", "r") as fh:
+     long_description = fh.read()
+ 
+-with open("requirements.txt") as f:
+-    requirements = f.read().splitlines()
++requirements = ["seqfold>=0.7.3"]
+ 
+ try:
+     require("setuptools>=38.3")
+-- 
+2.31.1
+
diff --git a/recipes/primers/meta.yaml b/recipes/primers/meta.yaml
new file mode 100644
index 0000000000000..1eec7202a9635
--- /dev/null
+++ b/recipes/primers/meta.yaml
@@ -0,0 +1,40 @@
+{% set name = "primers" %}
+{% set version = "0.5.10" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: 3ff2cd4c27a47326faeb8e54f36649752e6905109fdd3b22b90c2c167233f060
+  patches:
+    - 0001-directly-write-requirements-in-setup.py.patch
+
+build:
+  number: 0
+  noarch: python
+  script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage('primers', max_pin="x.x") }}
+
+requirements:
+  host:
+    - pip
+    - python =3
+    - setuptools
+
+  run:
+    - python =3
+    - seqfold >=0.7.3
+
+test:
+  imports:
+    - primers
+
+about:
+  home: "https://github.com/Lattice-Automation/primers"
+  license: MIT
+  license_file: LICENSE
+  summary: "This is a small, straightforward tool for creating PCR primers. Its target use-case is DNA assembly."
+  doc_url: "https://github.com/Lattice-Automation/primers"
diff --git a/recipes/prodigal/meta.yaml b/recipes/prodigal/meta.yaml
index f8c5bcbcff963..70e320ad05502 100644
--- a/recipes/prodigal/meta.yaml
+++ b/recipes/prodigal/meta.yaml
@@ -5,16 +5,23 @@ package:
 source:
   url: https://github.com/hyattpd/Prodigal/archive/v2.6.3.zip
   sha256: 4f73f64ea09be8421e08afabdc641db7775632210f5ef896f5fab4604c9dfcd9
+  patches:
+    # accepted PR https://github.com/hyattpd/Prodigal/pull/88
+    - score_nodes.patch
+    # accepted PR https://github.com/hyattpd/Prodigal/pull/100
+    - sd_motif_A.patch
+    - sd_motif_B.patch
 
 build:
-  number: 6
+  number: 8
+  run_exports:
+     - {{ pin_subpackage('prodigal', max_pin=None) }}
 
 requirements:
   build:
     - make
     - {{ compiler('c') }}
     - unzip
-  run:
 
 test:
   commands:
@@ -22,5 +29,10 @@ test:
 
 about:
   home: http://prodigal.ornl.gov/
+  dev_url: https://github.com/hyattpd/Prodigal
   license: GPL v3
   summary: Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/prodigal/score_nodes.patch b/recipes/prodigal/score_nodes.patch
new file mode 100644
index 0000000000000..890a7ef773286
--- /dev/null
+++ b/recipes/prodigal/score_nodes.patch
@@ -0,0 +1,32 @@
+From b34b63b17f712aedb371a70eccf6660c3e524808 Mon Sep 17 00:00:00 2001
+From: Martin Larralde <martin.larralde@embl.de>
+Date: Sun, 12 Sep 2021 14:30:12 +0200
+Subject: [PATCH] Fix typo in `score_nodes` function of `node.c`
+URL: https://github.com/hyattpd/Prodigal/pull/88
+
+---
+ node.c | 4 ++--
+ 1 file changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/node.c b/node.c
+index 5f7ccc4..7438dfb 100644
+--- a/node.c
++++ b/node.c
+@@ -487,7 +487,7 @@ void score_nodes(unsigned char *seq, unsigned char *rseq, int slen,
+     /* genes are also penalized.                                  */
+     /**************************************************************/
+     if(is_meta == 1 && slen < 3000 && edge_gene == 0 && 
+-       (nod[i].cscore < 5.0 || abs(nod[i].ndx-nod[i].stop_val < 120))) {
++       (nod[i].cscore < 5.0 || abs(nod[i].ndx-nod[i].stop_val) < 120)) {
+       nod[i].cscore -= META_PEN*dmax(0, (3000-slen)/2700.0);
+     }
+  
+@@ -515,7 +515,7 @@ void score_nodes(unsigned char *seq, unsigned char *rseq, int slen,
+       else nod[i].sscore -= 0.5;
+     }
+     else if(nod[i].cscore < 5.0 && is_meta == 1 && abs(nod[i].ndx-
+-            nod[i].stop_val < 120) && nod[i].sscore < 0.0)
++            nod[i].stop_val) < 120 && nod[i].sscore < 0.0)
+       nod[i].sscore -= tinf->st_wt; 
+   }
+ }
diff --git a/recipes/prodigal/sd_motif_A.patch b/recipes/prodigal/sd_motif_A.patch
new file mode 100644
index 0000000000000..972921686fcc4
--- /dev/null
+++ b/recipes/prodigal/sd_motif_A.patch
@@ -0,0 +1,32 @@
+From 7b8614dced6b431d872b6e8c8d5d62566caa0214 Mon Sep 17 00:00:00 2001
+From: Martin Larralde <martin.larralde@embl.de>
+Date: Fri, 27 Jan 2023 17:54:59 +0100
+Subject: [PATCH] Fix buffer initialization in SD motif detection code
+URL: https://github.com/hyattpd/Prodigal/pull/100
+
+---
+ sequence.c | 4 ++--
+ 1 file changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/sequence.c b/sequence.c
+index d5c8436..b2be997 100644
+--- a/sequence.c
++++ b/sequence.c
+@@ -663,7 +663,7 @@ int shine_dalgarno_exact(unsigned char *seq, int pos, int start, double *rwt) {
+   double match[6], cur_ctr, dis_flag;
+ 
+   limit = imin(6, start-4-pos);
+-  for(i = limit; i < 6; i++) match[i] = -10.0;
++  for(i = 0; i < 6; i++) match[i] = -10.0;
+ 
+   /* Compare the 6-base region to AGGAGG */
+   for(i = 0; i < limit; i++) {
+@@ -739,7 +739,7 @@ int shine_dalgarno_mm(unsigned char *seq, int pos, int start, double *rwt) {
+   double match[6], cur_ctr, dis_flag;
+ 
+   limit = imin(6, start-4-pos);
+-  for(i = limit; i < 6; i++) match[i] = -10.0;
++  for(i = 0; i < 6; i++) match[i] = -10.0;
+ 
+   /* Compare the 6-base region to AGGAGG */
+   for(i = 0; i < limit; i++) {
diff --git a/recipes/prodigal/sd_motif_B.patch b/recipes/prodigal/sd_motif_B.patch
new file mode 100644
index 0000000000000..91d2e519519aa
--- /dev/null
+++ b/recipes/prodigal/sd_motif_B.patch
@@ -0,0 +1,54 @@
+From 7cb28c92f50e910d3cc14fc92bf6b9c197c8c6bf Mon Sep 17 00:00:00 2001
+From: Martin Larralde <martin.larralde@embl.de>
+Date: Fri, 27 Jan 2023 20:52:51 +0100
+Subject: [PATCH] Slightly refactor comparison code in `shine_dalgarno`
+ functions
+URL: https://github.com/hyattpd/Prodigal/pull/100
+
+---
+ sequence.c | 25 +++++++++++++------------
+ 1 file changed, 13 insertions(+), 12 deletions(-)
+
+diff --git a/sequence.c b/sequence.c
+index b2be997..515c8b1 100644
+--- a/sequence.c
++++ b/sequence.c
+@@ -667,10 +667,10 @@ int shine_dalgarno_exact(unsigned char *seq, int pos, int start, double *rwt) {
+ 
+   /* Compare the 6-base region to AGGAGG */
+   for(i = 0; i < limit; i++) {
+-    if(pos+i < 0) continue;
+-    if(i%3 == 0 && is_a(seq, pos+i) == 1) match[i] = 2.0;
+-    else if(i%3 != 0 && is_g(seq, pos+i) == 1) match[i] = 3.0;
+-    else match[i] = -10.0;
++    if(pos + i >= 0) {
++      if(i%3 == 0 && is_a(seq, pos+i) == 1) match[i] = 2.0;
++      else if(i%3 != 0 && is_g(seq, pos+i) == 1) match[i] = 3.0;
++    }
+   }
+ 
+   /* Find the maximally scoring motif */
+@@ -743,14 +743,15 @@ int shine_dalgarno_mm(unsigned char *seq, int pos, int start, double *rwt) {
+ 
+   /* Compare the 6-base region to AGGAGG */
+   for(i = 0; i < limit; i++) {
+-    if(pos+i < 0) continue;
+-    if(i % 3 == 0) {
+-      if(is_a(seq, pos+i) == 1) match[i] = 2.0;
+-      else match[i] = -3.0;
+-    }
+-    else {
+-      if(is_g(seq, pos+i) == 1) match[i] = 3.0;
+-      else match[i] = -2.0;
++    if(pos+i >= 0) {
++      if(i % 3 == 0) {
++        if(is_a(seq, pos+i) == 1) match[i] = 2.0;
++        else match[i] = -3.0;
++      }
++      else {
++        if(is_g(seq, pos+i) == 1) match[i] = 3.0;
++        else match[i] = -2.0;
++      }
+     }
+   }
+ 
diff --git a/recipes/profile_dists/meta.yaml b/recipes/profile_dists/meta.yaml
new file mode 100644
index 0000000000000..e598169faa50d
--- /dev/null
+++ b/recipes/profile_dists/meta.yaml
@@ -0,0 +1,49 @@
+{% set name = "profile_dists" %}
+{% set version = "1.0.1" %}
+{% set sha256 = "440622e653aa201f1892f905973a808cfee78459cc3d7e4a68336177b978132a" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/profile_dists-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage("profile_dists", max_pin="x.x") }}
+  script: {{ PYTHON }} -m pip install . --use-pep517 --no-deps -vvv
+  entry_points:
+    - profile_dists=profile_dists.main:main
+
+requirements:
+  host:
+    - python
+    - pip
+    - pytest-runner
+  run:
+    - python >=3.8,<3.12
+    - {{ pin_compatible('numpy') }}
+    - pyarrow >=12.0.0
+    - fastparquet >=2023.4.0
+    - numba
+    - pytables >=3.8.0
+    - six >=1.16.0
+    - pandas >=2.0.2
+    - psutil
+
+test:
+  imports:
+    - profile_dists
+  commands:
+    - profile_dists -h
+
+about:
+  home: 'https://pypi.org/project/profile-dists'
+  summary: 'Profile Dists: Rapid calcualtion of allele profile distances and distance base querying'
+  license: Apache-2.0
+  license_file: LICENSE
+  dev_url: 'https://github.com/phac-nml/profile_dists/'
diff --git a/recipes/prokbert/meta.yaml b/recipes/prokbert/meta.yaml
new file mode 100644
index 0000000000000..6fd3153cb17c7
--- /dev/null
+++ b/recipes/prokbert/meta.yaml
@@ -0,0 +1,52 @@
+{% set name = "prokbert" %}
+{% set version = "0.0.44" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/prokbert-{{ version }}.tar.gz
+  sha256: 19a6c9890c7689d795a8898061d48e7023b64226388c1c67f2f68a91c42a5012
+
+build:
+  number: 0
+  noarch: python
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('prokbert', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.10
+    - pip
+  run:
+    - python >=3.10
+    - pytorch
+    - torchvision
+    - biopython
+    - pandas >=2.0.0
+    - datasets >=2.0.1
+    - scikit-learn >=1.2.2
+    - scipy >=1.10.0
+    - transformers >=4.23
+    - tables >=3.8.0
+    - h5py >=3.7.0
+
+test:
+  imports:
+    - prokbert
+
+about:
+  home: https://github.com/nbrg-ppcu/prokbert
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: 'ProkBERT is a genomic language model specifically designed for microbiome applications. It leverages the power of machine learning to decipher complex microbial interactions, predict functionalities, and uncover novel patterns in extensive datasets. The ProkBERT model family, built on transfer learning and self-supervised methodologies, capitalizes on the abundant genomic data available.'
+  doc_url: https://prokbert.readthedocs.io/en/latest/
+
+extra:
+  recipe-maintainers:
+    - obalasz
+  identifiers:
+    - doi:10.1101/2023.11.09.566411
diff --git a/recipes/prokka/meta.yaml b/recipes/prokka/meta.yaml
index 989ccee2c6188..d55d360386977 100644
--- a/recipes/prokka/meta.yaml
+++ b/recipes/prokka/meta.yaml
@@ -11,9 +11,11 @@ source:
   sha256: '{{ sha256 }}'
 
 build:
-  number: 4
+  number: 5
   noarch: generic
-
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+    
 requirements:
   host:
     - perl
@@ -47,7 +49,7 @@ test:
 
 about:
   home: https://github.com/tseemann/{{ name }}
-  license: GPLv2
+  license: GPL-3.0-only
   license_family: GPL
   license_file: 'doc/LICENSE.Prokka'
   summary: Rapid annotation of prokaryotic genomes
diff --git a/recipes/pronto/meta.yaml b/recipes/pronto/meta.yaml
index 2a7bfbc188527..d6d9f73830252 100644
--- a/recipes/pronto/meta.yaml
+++ b/recipes/pronto/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pronto" %}
-{% set version = "2.5.4" %}
+{% set version = "2.5.7" %}
 
 package:
   name: "{{ name }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 8e9bf0c59a8aa041f09fbab1aeea7c5763428fe0639d1b6f858175ce37f02a52
+  sha256: 014a5b02064781d6edd7ca5b4f63b13342dd9b5322248f5a4740f48a98464629
 
 build:
   noarch: python
   number: 0
-  script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
+  script: {{ PYTHON }} -m pip install . --no-build-isolation --no-deps -vvv
+  run_exports:
+    - {{ pin_subpackage('pronto', max_pin="x") }}
 
 requirements:
   host:
@@ -35,10 +37,13 @@ test:
     - pronto.serializers
 
 about:
-  home: http://github.com/althonos/pronto
+  home: https://github.com/althonos/pronto
   license: MIT
   summary: 'Python frontend to ontologies'
   license_family: MIT
+  license_file: COPYING
+  doc_url: https://pronto.readthedocs.io/en/stable/
+  dev_url: https://github.com/althonos/pronto
 
 extra:
   recipe-maintainers:
diff --git a/recipes/proovframe/meta.yaml b/recipes/proovframe/meta.yaml
index 049b39ce3d5e0..d625a9037982e 100644
--- a/recipes/proovframe/meta.yaml
+++ b/recipes/proovframe/meta.yaml
@@ -12,8 +12,10 @@ source:
   sha256: '{{ sha256 }}'
 
 build:
-  number: 0
+  number: 1
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('proovframe', max_pin='x') }}
 
 requirements:
   run:
@@ -41,6 +43,10 @@ about:
   license_family: MIT
   license_file: LICENSE
   summary: frame-shift correction for long read (meta)genomics
+  description: |
+    Gene prediction on long reads, aka PacBio and Nanopore, is often impaired by indels causing frameshift. 
+    Proovframe detects and corrects frameshifts in coding sequences from raw long reads or long-read derived assemblies.
+  dev_url: https://github.com/{{ user }}/{{ name }}
 
 maintainers:
   - thanhleviet
diff --git a/recipes/prophyle/build.sh b/recipes/prophyle/build.sh
index bf012780ba390..4d7f6a581740e 100755
--- a/recipes/prophyle/build.sh
+++ b/recipes/prophyle/build.sh
@@ -1,9 +1,8 @@
 #! /usr/bin/env bash
-
-set -e
+set -ex
 set -o pipefail
 
 export C_INCLUDE_PATH=${PREFIX}/include
 export CPLUS_INCLUDE_PATH=${PREFIX}/include
-make -C prophyle CC="$CC -fcommon -L$PREFIX/lib" CXX="$CXX -L$PREFIX/lib"  # hacky, but the nesting of Makefiles makes it annoying otherwise
+make -j${CPU_COUNT} -C prophyle CC="$CC -fcommon -L$PREFIX/lib" CXX="$CXX -L$PREFIX/lib"  # hacky, but the nesting of Makefiles makes it annoying otherwise
 PROPHYLE_PACKBIN=1 python -m pip install --no-deps --ignore-installed . 
diff --git a/recipes/prophyle/meta.yaml b/recipes/prophyle/meta.yaml
index c89bbe4b19ebe..6d620b30e2e04 100644
--- a/recipes/prophyle/meta.yaml
+++ b/recipes/prophyle/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.3.2.0" %}
-{% set sha256 = "f398602a5521bc9a7884a897e14a9d5f47226df4784457909f0c951f0ac4300d" %}
+{% set version = "0.3.3.2" %}
+{% set sha256 = "b9476c617bcbc3eea229a1becd7f70133d3d3c59869e90284dfaf4b915757366" %}
 
 package:
   name: prophyle
@@ -10,15 +10,15 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 2
+  number: 1
   skip: True # [py27]
-  script:
+  run_exports:
+    - {{ pin_subpackage("prophyle", max_pin="x.x") }}
   entry_points:
     - prophyle = prophyle.prophyle:main
     - prophyle_analyze.py = prophyle.prophyle_analyze:main
     - prophyle_assignment.py = prophyle.prophyle_assignment:main
     - prophyle_ncbi_tree.py = prophyle.prophyle_ncbi_tree:main
-    - prophyle_otu_table.py = prophyle.prophyle_otu_table:main
     - prophyle_paired_end.py = prophyle.prophyle_paired_end:main
     - prophyle_plot_tree.py = prophyle.prophyle_plot_tree:main
     - prophyle_propagation_makefile.py = prophyle.prophyle_propagation_makefile:main
@@ -65,7 +65,6 @@ test:
     - prophyle_analyze.py --help
     - prophyle_assignment.py --help
     - prophyle_ncbi_tree.py --help
-    - prophyle_otu_table.py --help
     - prophyle_paired_end.py --help
     - prophyle_plot_tree.py --help
     - prophyle_propagation_makefile.py --help
@@ -79,3 +78,6 @@ about:
   license_file: LICENSE.txt
   summary: ProPhyle is an accurate, resource-frugal and deterministic phylogeny-based metagenomic classifier.
 
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/prosampler/build.sh b/recipes/prosampler/build.sh
index 2a751024f5a0b..294eb68008e78 100644
--- a/recipes/prosampler/build.sh
+++ b/recipes/prosampler/build.sh
@@ -1,4 +1,4 @@
 #!/bin/bash
-$CXX -o ProSampler ProSampler.cc
+$CXX -o ProSampler ProSampler_v1.5.cc
 mkdir -p $PREFIX/bin
 cp ProSampler $PREFIX/bin
diff --git a/recipes/prosampler/meta.yaml b/recipes/prosampler/meta.yaml
index 24f5bee0cd1e9..4433e38f225ef 100644
--- a/recipes/prosampler/meta.yaml
+++ b/recipes/prosampler/meta.yaml
@@ -1,16 +1,18 @@
-{% set version = "1.0" %}
-{% set sha256 = "570671cd5effd50c015515b80e0fdafeb0a353cecb626a050a92bb6658a4b69b" %}
+{% set version = "1.5" %}
+{% set sha256 = "ae75dad4133a5f2d6da487118a3e8e5bcbfc361821edb72c7c36b966419d6187" %}
 
 package:
   name: prosampler
   version: {{ version }}
 
 source:
-  url: https://github.com/zhengchangsulab/ProSampler/raw/master/PROSAMPLER_01_22_2019.tar.gz 
+  url: https://github.com/zhengchangsulab/ProSampler/raw/master/PROSMPLER_v1.5.tar.gz
   sha256: {{ sha256 }}
 
 build:
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('prosampler', max_pin=None) }}
 
 requirements:
   build:
@@ -26,5 +28,7 @@ about:
   summary: An ultra-fast motif finding program in large ChIP-seq datasets.
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:prosampler
diff --git a/recipes/prot-scriber/meta.yaml b/recipes/prot-scriber/meta.yaml
index 2c77e9eecee10..c74897c5d6a79 100644
--- a/recipes/prot-scriber/meta.yaml
+++ b/recipes/prot-scriber/meta.yaml
@@ -1,12 +1,14 @@
-{% set version = "0.1.4" %}
-{% set sha256 = "fe15fe6d11a2466af3169f33e61ba532333563d0b50a07054481c2e0c11a013f" %}
+{% set version = "0.1.5" %}
+{% set sha256 = "75d75e7a78b631716efb25f762b18405ada70eec3558a2b721c8c633c308269e" %}
 
 package:
   name: prot-scriber
   version: {{ version }}
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("prot-scriber", max_pin="x") }}
 
 source:
   url: https://github.com/usadellab/prot-scriber/archive/v{{ version }}.tar.gz
@@ -25,3 +27,4 @@ about:
   home: https://github.com/usadellab/prot-scriber
   license: GPL-3
   summary: "Assigns short human readable descriptions (HRD) to query biological sequences using reference candidate descriptions."
+  license_file: LICENSE
diff --git a/recipes/proteinortho/meta.yaml b/recipes/proteinortho/meta.yaml
index af04c4ecd31fe..3f378b3862338 100755
--- a/recipes/proteinortho/meta.yaml
+++ b/recipes/proteinortho/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "proteinortho" %}
-{% set version = "6.3.0" %}
-{% set sha256 = "9b0142d29d22a35732b17be2ce125ccbc7d711edc4bb8caf1ffc808eb16975f1" %}
+{% set version = "6.3.1" %}
+{% set sha256 = "9b3f5eb946a4f0f85c362db550163534d7687b8c88906b2eaf81f519de844b08" %}
 
 package:
   name: {{ name }}
@@ -12,6 +12,9 @@ source:
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage('proteinortho', max_pin="x.x.x") }}
+
 
 requirements:
   build:
@@ -44,3 +47,8 @@ about:
   license_family: GPL
   license_file: LICENSE
   summary: "Proteinortho is a tool to detect orthologous genes within different species."
+
+extra:
+  identifiers:
+    - biotools:proteinortho
+    - doi:10.3389/fbinf.2023.1322477
diff --git a/recipes/protgraph/meta.yaml b/recipes/protgraph/meta.yaml
index 1837064bfc1d0..49cc0bb70b774 100644
--- a/recipes/protgraph/meta.yaml
+++ b/recipes/protgraph/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "protgraph" %}
-{% set version = "0.3.9" %}
+{% set version = "0.3.10" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: a1e69aed7dc57c8dcde2a70605a7ed0b39e36bcb03800f0dfecad476cbce143d
+  sha256: 52d0449eea53c8f113d1287fd5f40e837bf3bd6ed13193974fbd0c3bd358f800
 
 build:
   number: 0
@@ -15,6 +15,8 @@ build:
   script: {{ PYTHON }} -m pip install . -vv
   entry_points:
     - protgraph=protgraph.protgraph:main
+  run_exports:
+    - {{ pin_subpackage('protgraph', max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/protmapper/meta.yaml b/recipes/protmapper/meta.yaml
index e3ba69bbf2d86..fe4ac6f625278 100644
--- a/recipes/protmapper/meta.yaml
+++ b/recipes/protmapper/meta.yaml
@@ -1,46 +1,47 @@
 {% set name = "protmapper" %}
-{% set version = "0.0.21" %}
+{% set version = "0.0.29" %}
+{% set sha256 = "d0d10198fb000401d03ba6c271869970caf8e1c8b46db686d2eed153fa8c2257" %}
 
 package:
-  name: "{{ name|lower }}"
-  version: "{{ version }}"
+  name: {{ name|lower }}
+  version: {{ version }}
 
 source:
-  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: "86e939659e3cecbde324250b66b0025d147de819c352a6c0e99d1eae526a33c8"
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/protmapper-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
 
 build:
   number: 0
   noarch: python
+  script: {{ PYTHON }} -m pip install . --no-deps -vvv
   entry_points:
     - protmapper = protmapper.cli:main
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  run_exports:
+    - {{ pin_subpackage('protmapper', max_pin="x") }}
 
 requirements:
   host:
-    - pip
     - python >=3
+    - pip
   run:
-    - boto3
     - python >=3
-    - rdflib
     - requests
+    - boto3
+    - pystow >=0.1.0
+    - rdflib
 
 test:
   imports:
     - protmapper
-    - protmapper.rest_api
   commands:
     - protmapper --help
-  requires:
-    - nose
 
 about:
-  home: "https://github.com/indralab/protmapper"
-  license: "BSD"
-  license_family: "BSD"
-  license_file: ""
-  summary: "Map protein sites to human reference sequence."
+  home: https://github.com/indralab/protmapper
+  summary: Map protein sites to human reference sequence.
+  license: BSD-2-Clause
+  license_family: BSD
+  license_file: LICENSE
   doc_url: "https://protmapper.readthedocs.io"
   dev_url: "https://github.com/indralab/protmapper"
 
diff --git a/recipes/prscs/meta.yaml b/recipes/prscs/meta.yaml
index 4c11c77614a81..4effc727ba18b 100644
--- a/recipes/prscs/meta.yaml
+++ b/recipes/prscs/meta.yaml
@@ -1,7 +1,9 @@
-{% set version = "1.0.0" %} # Remember to update sha256 below
+{% set version = "1.1.0" %} # Remember to update sha256 below
+{% set name = "PRScs" %}
+{% set sha256 = "eca00fe40bef63178e7a6dcf56ad529206be04139b809f6c8cbf6cf5365da758" %}
 
 package:
-  name: prscs
+  name: {{ name|lower }}
   version: {{ version }}
 
 build:
@@ -10,8 +12,8 @@ build:
   script: mkdir -p $PREFIX/bin ; mv *.py $PREFIX/bin
 
 source:
-  url: https://github.com/getian107/PRScs/archive/refs/tags/v1.0.0.tar.gz
-  sha256: 806c0e7cf18d3d128111f17e5a0b2bd906ba4749d607a96d92719d457793fc4c
+  url: https://github.com/getian107/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
 
 requirements:
   run:
@@ -21,7 +23,7 @@ requirements:
 
 about:
   home: https://github.com/getian107/PRScs
-  license: GPL 3
+  license: MIT
   license_file: LICENSE
   summary: |
     PRS-CS is a Python based command line tool that infers posterior SNP effect sizes under continuous shrinkage (CS) priors using GWAS summary statistics and an external LD reference panel.
diff --git a/recipes/psiclass/meta.yaml b/recipes/psiclass/meta.yaml
index 1180044a3d9b0..9915fbfda7c20 100644
--- a/recipes/psiclass/meta.yaml
+++ b/recipes/psiclass/meta.yaml
@@ -8,7 +8,9 @@ source:
   sha256: c60c0f33f9a076b97ccdba68b9140a5fb6936a5c5e309d70b3d0cf558828f73d
 
 build:
-  number: 2
+  number: 4
+  run_exports:
+    - {{ pin_subpackage("psiclass", max_pin="x.x") }}
 
 requirements:
   build:
@@ -16,10 +18,11 @@ requirements:
     - {{ compiler('cxx') }}
     - {{ compiler('c') }}
   host:
+    - zlib >=1.2.11
     - samtools 0.1.19.*
   run:
     - perl
-
+    - samtools 0.1.19.*
 test:
   commands:
     - classes 2>&1 | cat > /dev/null
diff --git a/recipes/psims/meta.yaml b/recipes/psims/meta.yaml
index 59eface72977a..fbab7ed9f4c18 100644
--- a/recipes/psims/meta.yaml
+++ b/recipes/psims/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "1.2.6" %}
-{% set sha256 = "88a2da966d043d7c8ef77326dbb9e5ed8fa6a7c4b8c73716ffb87b166a0f489f" %}
+{% set version = "1.3.3" %}
+{% set sha256 = "d956fb6d2a42087fe35595ad452802fe115a7952c8bcb63951d19b99530b1358" %}
 
 package:
   name: "psims"
@@ -11,14 +11,17 @@ source:
 
 build:
   number: 0
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('psims', max_pin='x') }}
 
 requirements:
   host:
     - pip
-    - python
+    - python >=3.9
   run:
+    - python >=3.9
     - lxml
     - six
     - sqlalchemy
diff --git a/recipes/psm-utils/meta.yaml b/recipes/psm-utils/meta.yaml
index 1f9b5259ab836..526d07c3caedb 100644
--- a/recipes/psm-utils/meta.yaml
+++ b/recipes/psm-utils/meta.yaml
@@ -1,29 +1,32 @@
-{% set version = "0.2.3" %}
-{% set sha256 = "61438d73852f03fedebd51dfce52ffe3a50eda8cf5b239f9e82be04bc1de00f3" %}
+{% set name = "psm-utils" %}
+{% set version = "0.9.0" %}
+{% set sha256 = "445bb667088d237d0b78f443d184b080a9ce6b33eab3b585295ce51194950abb" %}
 
 package:
-  name: "psm-utils"
+  name: {{ name|lower }}
   version: "{{ version }}"
 
 source:
-  url: https://files.pythonhosted.org/packages/source/p/psm-utils/psm-utils-{{ version }}.tar.gz
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/psm_utils-{{ version }}.tar.gz
   sha256: {{ sha256 }}
 
 build:
   number: 0
   entry_points:
-    - psm-utils=psm-utils.__main__:main
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv"
+    - psm_utils=psm_utils.__main__:main
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('psm-utils', max_pin="x.x") }}
 
 requirements:
   host:
     - pip
     - python >=3.7
-    - flit-core
   run:
     - python >=3.7
-    - pyteomics >=4
+    - pyteomics >=4,<4.7
+    - pyopenms
     - lxml
     - psims
     - pandas
@@ -31,6 +34,7 @@ requirements:
     - click
     - rich
     - pydantic
+    - sqlalchemy
 
 test:
   imports:
@@ -46,5 +50,8 @@ about:
   dev_url: https://github.com/compomics/psm_utils
 
 extra:
+  identifiers:
+    - doi:10.1021/acs.jproteome.2c00609
+    - biotools:psm_utils
   recipe-maintainers:
     - compomics
diff --git a/recipes/pstrain/build.sh b/recipes/pstrain/build.sh
new file mode 100644
index 0000000000000..792771b573bf4
--- /dev/null
+++ b/recipes/pstrain/build.sh
@@ -0,0 +1,8 @@
+#!/bin/bash
+
+mkdir -p $PREFIX/bin
+
+cp $SRC_DIR/scripts/*.py $PREFIX/bin
+cp $SRC_DIR/scripts/*.sh $PREFIX/bin
+cp $SRC_DIR/scripts/*.jar $PREFIX/bin
+
diff --git a/recipes/pstrain/meta.yaml b/recipes/pstrain/meta.yaml
new file mode 100644
index 0000000000000..039b168857727
--- /dev/null
+++ b/recipes/pstrain/meta.yaml
@@ -0,0 +1,48 @@
+{% set version = "1.0.3" %}
+
+package:
+  name: pstrain
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("pstrain", max_pin="x") }}
+  entry_points:
+    - pstrain = PStrain:main
+
+source:
+  url: https://github.com/wshuai294/PStrain/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: a78315a87048335045d0e1ec3123f33f75327d627a03b17aaa003990d2375214
+
+requirements:
+  build:
+#    noarch: generic
+  host:
+  run:
+    - python >=3.7 
+    - metaphlan ==4
+    - pysam
+    - numpy 
+    - pulp
+    - samtools 
+    - bowtie2
+    - openjdk
+
+
+about:
+  home: https://github.com/wshuai294/PStrain
+  license: MIT
+  summary: An Iterative Microbial Strains Profiling Algorithm for Shotgun Metagenomic Sequencing Data
+
+test:
+  commands:
+    - pstrain --help
+
+extra:
+  skip-lints:
+    - should_be_noarch_generic
+  identifiers:
+    - biotools:pstrain
+  recipe-maintainers:
+    - wshuai294
diff --git a/recipes/ptrimmer/build.sh b/recipes/ptrimmer/build.sh
index 577fb6a332cd0..f08bf5f89c00d 100644
--- a/recipes/ptrimmer/build.sh
+++ b/recipes/ptrimmer/build.sh
@@ -1,5 +1,13 @@
-#!/bin/sh
+#!/bin/bash -euo
 
-make CC=$CC LIBDIR=-L$PREFIX/lib INCLUDE=-I$PREFIX/include
-mkdir -p $PREFIX/bin
-mv pTrimmer-* $PREFIX/bin/ptrimmer
\ No newline at end of file
+mkdir -p ${PREFIX}/bin
+
+export INCLUDE_PATH="${PREFIX}/include"
+export LIBRARY_PATH="${PREFIX}/lib"
+export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
+
+make CC="${CC} ${LDFLAGS}" CFLAGS="${CFLAGS} -O3" LIBDIR="-L${PREFIX}/lib" \
+	INCLUDE="-I${PREFIX}/include" -j"${CPU_COUNT}"
+
+chmod 755 pTrimmer
+mv pTrimmer ${PREFIX}/bin/ptrimmer
diff --git a/recipes/ptrimmer/meta.yaml b/recipes/ptrimmer/meta.yaml
index d38555097e3dd..113702231d46c 100644
--- a/recipes/ptrimmer/meta.yaml
+++ b/recipes/ptrimmer/meta.yaml
@@ -1,15 +1,18 @@
-{% set version = "1.3.3" %}
+{% set name = "ptrimmer" %}
+{% set version = "1.4.0" %}
 
 package:
-  name: ptrimmer
+  name: {{ name }}
   version: {{ version }}
 
-build:
-  number: 5
-
 source:
   url: https://github.com/DMU-lilab/pTrimmer/archive/V{{ version }}.tar.gz
-  sha256: cd0b18b00246e23e1a3ac4e9150e986caead9cca5e4d1593c6ec1aac1c47fb7e
+  sha256: dbc332ec8a3b8aba529eca6fcd29008ede28a52e7f84dd2a9f397b2870e8c5fe
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('ptrimmer', max_pin="x") }}
 
 requirements:
   build:
@@ -20,15 +23,19 @@ requirements:
     - zlib
   run:
     - ncurses
-    - zlib
-
-about:
-  home: https://github.com/DMU-lilab/pTrimmer
-  license: GNU General Public License v3 (GPL-3.0)
-  license_family: GPL
-  license_file: LICENSE
-  summary: Used to trim off the primer sequence from mutiplex amplicon sequencing
 
 test:
   commands:
     - ptrimmer --help 2>&1 >/dev/null | grep "Usage"
+
+about:
+  home: "https://github.com/DMU-lilab/pTrimmer"
+  license: "GPL-3.0-or-later"
+  license_family: GPL3
+  license_file: LICENSE
+  summary: "Used to trim off the primer sequence from mutiplex amplicon sequencing"
+  dev_url: "https://github.com/DMU-lilab/pTrimmer"
+
+extra:
+  identifiers:
+    - doi:10.1186/s12859-019-2854-x
diff --git a/recipes/purge_haplotigs/meta.yaml b/recipes/purge_haplotigs/meta.yaml
index c8cde29e6dec1..583dc731bed0f 100644
--- a/recipes/purge_haplotigs/meta.yaml
+++ b/recipes/purge_haplotigs/meta.yaml
@@ -1,15 +1,18 @@
-{% set version = "1.1.2" %}
+{% set name = "purge_haplotigs" %}
+{% set version = "1.1.3" %}
 
 package:
-  name: purge_haplotigs
-  version: '{{ version }}'
+  name: {{ name }}
+  version: {{ version }}
 
 source:
-  url: https://bitbucket.org/mroachawri/purge_haplotigs/get/v{{ version }}.tar.gz
-  sha256: 14daf0454606232c5adbc5ca42cd873a0c4eb8b7f52d22edd434027d5e8fdca0
+  url: https://bitbucket.org/mroachawri/{{ name }}/get/v{{ version }}.tar.gz
+  sha256: 68d9bc8464f6d53281127576eab67068fbc1c45d37a60dffdc344b2c0be4ff84
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
   noarch: generic
 
 requirements:
@@ -40,3 +43,7 @@ about:
   license_family: MIT
   license_file: LICENSE
   summary: Pipeline to help with curating heterozygous diploid genome assemblies.
+
+extra:
+  recipe-maintainers:
+    - beardymcjohnface
diff --git a/recipes/pxblat/build_failure.linux-64.yaml b/recipes/pxblat/build_failure.linux-64.yaml
new file mode 100644
index 0000000000000..5b942524e2cd1
--- /dev/null
+++ b/recipes/pxblat/build_failure.linux-64.yaml
@@ -0,0 +1,104 @@
+recipe_sha: 9910e8828c844b7213ab38c0600f3caa04cc87acd4497a3b3fbd44a337aefad8  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+log: |2-
+    File "/opt/conda/conda-bld/pxblat_1688740629379/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/pip/_internal/cli/base_command.py", line 169, in exc_logging_wrapper
+      status = run_func(*args)
+               ^^^^^^^^^^^^^^^
+    File "/opt/conda/conda-bld/pxblat_1688740629379/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
+      return func(self, options, args)
+             ^^^^^^^^^^^^^^^^^^^^^^^^^
+    File "/opt/conda/conda-bld/pxblat_1688740629379/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/pip/_internal/commands/install.py", line 377, in run
+      requirement_set = resolver.resolve(
+                        ^^^^^^^^^^^^^^^^^
+    File "/opt/conda/conda-bld/pxblat_1688740629379/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/pip/_internal/resolution/resolvelib/resolver.py", line 73, in resolve
+      collected = self.factory.collect_root_requirements(root_reqs)
+                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+    File "/opt/conda/conda-bld/pxblat_1688740629379/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/pip/_internal/resolution/resolvelib/factory.py", line 491, in collect_root_requirements
+      req = self._make_requirement_from_install_req(
+            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+    File "/opt/conda/conda-bld/pxblat_1688740629379/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/pip/_internal/resolution/resolvelib/factory.py", line 453, in _make_requirement_from_install_req
+      cand = self._make_candidate_from_link(
+             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+    File "/opt/conda/conda-bld/pxblat_1688740629379/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link
+      self._link_candidate_cache[link] = LinkCandidate(
+                                         ^^^^^^^^^^^^^^
+    File "/opt/conda/conda-bld/pxblat_1688740629379/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__
+      super().__init__(
+    File "/opt/conda/conda-bld/pxblat_1688740629379/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__
+      self.dist = self._prepare()
+                  ^^^^^^^^^^^^^^^
+    File "/opt/conda/conda-bld/pxblat_1688740629379/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare
+      dist = self._prepare_distribution()
+             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+    File "/opt/conda/conda-bld/pxblat_1688740629379/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution
+      return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
+             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+    File "/opt/conda/conda-bld/pxblat_1688740629379/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/pip/_internal/operations/prepare.py", line 516, in prepare_linked_requirement
+      return self._prepare_linked_requirement(req, parallel_builds)
+             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+    File "/opt/conda/conda-bld/pxblat_1688740629379/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/pip/_internal/operations/prepare.py", line 631, in _prepare_linked_requirement
+      dist = _get_prepared_distribution(
+             ^^^^^^^^^^^^^^^^^^^^^^^^^^^
+    File "/opt/conda/conda-bld/pxblat_1688740629379/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution
+      abstract_dist.prepare_distribution_metadata(
+    File "/opt/conda/conda-bld/pxblat_1688740629379/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata
+      self.req.prepare_metadata()
+    File "/opt/conda/conda-bld/pxblat_1688740629379/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/pip/_internal/req/req_install.py", line 555, in prepare_metadata
+      self.metadata_directory = generate_metadata(
+                                ^^^^^^^^^^^^^^^^^^
+    File "/opt/conda/conda-bld/pxblat_1688740629379/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/pip/_internal/operations/build/metadata.py", line 35, in generate_metadata
+      distinfo_dir = backend.prepare_metadata_for_build_wheel(metadata_dir)
+                     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+    File "/opt/conda/conda-bld/pxblat_1688740629379/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/pip/_internal/utils/misc.py", line 713, in prepare_metadata_for_build_wheel
+      return super().prepare_metadata_for_build_wheel(
+             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+    File "/opt/conda/conda-bld/pxblat_1688740629379/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_impl.py", line 186, in prepare_metadata_for_build_wheel
+      return self._call_hook('prepare_metadata_for_build_wheel', {
+             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+    File "/opt/conda/conda-bld/pxblat_1688740629379/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_impl.py", line 321, in _call_hook
+      raise BackendUnavailable(data.get('traceback', ''))
+  pip._vendor.pyproject_hooks._impl.BackendUnavailable: Traceback (most recent call last):
+    File "/opt/conda/conda-bld/pxblat_1688740629379/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 77, in _build_backend
+      obj = import_module(mod_path)
+            ^^^^^^^^^^^^^^^^^^^^^^^
+    File "/opt/conda/conda-bld/pxblat_1688740629379/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.11/importlib/__init__.py", line 126, in import_module
+      return _bootstrap._gcd_import(name[level:], package, level)
+             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+    File "<frozen importlib._bootstrap>", line 1204, in _gcd_import
+    File "<frozen importlib._bootstrap>", line 1176, in _find_and_load
+    File "<frozen importlib._bootstrap>", line 1126, in _find_and_load_unlocked
+    File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
+    File "<frozen importlib._bootstrap>", line 1204, in _gcd_import
+    File "<frozen importlib._bootstrap>", line 1176, in _find_and_load
+    File "<frozen importlib._bootstrap>", line 1126, in _find_and_load_unlocked
+    File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
+    File "<frozen importlib._bootstrap>", line 1204, in _gcd_import
+    File "<frozen importlib._bootstrap>", line 1176, in _find_and_load
+    File "<frozen importlib._bootstrap>", line 1126, in _find_and_load_unlocked
+    File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
+    File "<frozen importlib._bootstrap>", line 1204, in _gcd_import
+    File "<frozen importlib._bootstrap>", line 1176, in _find_and_load
+    File "<frozen importlib._bootstrap>", line 1140, in _find_and_load_unlocked
+  ModuleNotFoundError: No module named 'poetry'
+  [0m[31m
+  [0mRemoved file://$SRC_DIR from build tracker '/tmp/pip-build-tracker-jl36fbnx'
+  Removed build tracker: '/tmp/pip-build-tracker-jl36fbnx'
+  Traceback (most recent call last):
+    File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
+      sys.exit(main())
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
+      call_conda_build(action, config)
+    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
+      result = api.build(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
+      return build_tree(
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
+      packages_from_this = build(metadata, stats,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
+      utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
+      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
+    File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
+      raise subprocess.CalledProcessError(proc.returncode, _args)
+  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/pxblat_1688740629379/work/conda_build.sh']' returned non-zero exit status 2.
+# Last 100 lines of the build log.
diff --git a/recipes/pxblat/build_failure.osx-64.yaml b/recipes/pxblat/build_failure.osx-64.yaml
new file mode 100644
index 0000000000000..7cf5a245e3926
--- /dev/null
+++ b/recipes/pxblat/build_failure.osx-64.yaml
@@ -0,0 +1,104 @@
+recipe_sha: 9910e8828c844b7213ab38c0600f3caa04cc87acd4497a3b3fbd44a337aefad8  # The commit at which this recipe failed to build.
+skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
+log: |2-
+    File "/opt/mambaforge/envs/bioconda/conda-bld/pxblat_1688740225962/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.11/site-packages/pip/_internal/cli/base_command.py", line 169, in exc_logging_wrapper
+      status = run_func(*args)
+               ^^^^^^^^^^^^^^^
+    File "/opt/mambaforge/envs/bioconda/conda-bld/pxblat_1688740225962/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.11/site-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
+      return func(self, options, args)
+             ^^^^^^^^^^^^^^^^^^^^^^^^^
+    File "/opt/mambaforge/envs/bioconda/conda-bld/pxblat_1688740225962/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.11/site-packages/pip/_internal/commands/install.py", line 377, in run
+      requirement_set = resolver.resolve(
+                        ^^^^^^^^^^^^^^^^^
+    File "/opt/mambaforge/envs/bioconda/conda-bld/pxblat_1688740225962/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.11/site-packages/pip/_internal/resolution/resolvelib/resolver.py", line 73, in resolve
+      collected = self.factory.collect_root_requirements(root_reqs)
+                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+    File "/opt/mambaforge/envs/bioconda/conda-bld/pxblat_1688740225962/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.11/site-packages/pip/_internal/resolution/resolvelib/factory.py", line 491, in collect_root_requirements
+      req = self._make_requirement_from_install_req(
+            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+    File "/opt/mambaforge/envs/bioconda/conda-bld/pxblat_1688740225962/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.11/site-packages/pip/_internal/resolution/resolvelib/factory.py", line 453, in _make_requirement_from_install_req
+      cand = self._make_candidate_from_link(
+             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+    File "/opt/mambaforge/envs/bioconda/conda-bld/pxblat_1688740225962/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.11/site-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link
+      self._link_candidate_cache[link] = LinkCandidate(
+                                         ^^^^^^^^^^^^^^
+    File "/opt/mambaforge/envs/bioconda/conda-bld/pxblat_1688740225962/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.11/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__
+      super().__init__(
+    File "/opt/mambaforge/envs/bioconda/conda-bld/pxblat_1688740225962/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.11/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__
+      self.dist = self._prepare()
+                  ^^^^^^^^^^^^^^^
+    File "/opt/mambaforge/envs/bioconda/conda-bld/pxblat_1688740225962/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.11/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare
+      dist = self._prepare_distribution()
+             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+    File "/opt/mambaforge/envs/bioconda/conda-bld/pxblat_1688740225962/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.11/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution
+      return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
+             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+    File "/opt/mambaforge/envs/bioconda/conda-bld/pxblat_1688740225962/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.11/site-packages/pip/_internal/operations/prepare.py", line 516, in prepare_linked_requirement
+      return self._prepare_linked_requirement(req, parallel_builds)
+             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+    File "/opt/mambaforge/envs/bioconda/conda-bld/pxblat_1688740225962/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.11/site-packages/pip/_internal/operations/prepare.py", line 631, in _prepare_linked_requirement
+      dist = _get_prepared_distribution(
+             ^^^^^^^^^^^^^^^^^^^^^^^^^^^
+    File "/opt/mambaforge/envs/bioconda/conda-bld/pxblat_1688740225962/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.11/site-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution
+      abstract_dist.prepare_distribution_metadata(
+    File "/opt/mambaforge/envs/bioconda/conda-bld/pxblat_1688740225962/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.11/site-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata
+      self.req.prepare_metadata()
+    File "/opt/mambaforge/envs/bioconda/conda-bld/pxblat_1688740225962/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.11/site-packages/pip/_internal/req/req_install.py", line 555, in prepare_metadata
+      self.metadata_directory = generate_metadata(
+                                ^^^^^^^^^^^^^^^^^^
+    File "/opt/mambaforge/envs/bioconda/conda-bld/pxblat_1688740225962/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.11/site-packages/pip/_internal/operations/build/metadata.py", line 35, in generate_metadata
+      distinfo_dir = backend.prepare_metadata_for_build_wheel(metadata_dir)
+                     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+    File "/opt/mambaforge/envs/bioconda/conda-bld/pxblat_1688740225962/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.11/site-packages/pip/_internal/utils/misc.py", line 713, in prepare_metadata_for_build_wheel
+      return super().prepare_metadata_for_build_wheel(
+             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+    File "/opt/mambaforge/envs/bioconda/conda-bld/pxblat_1688740225962/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_impl.py", line 186, in prepare_metadata_for_build_wheel
+      return self._call_hook('prepare_metadata_for_build_wheel', {
+             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+    File "/opt/mambaforge/envs/bioconda/conda-bld/pxblat_1688740225962/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_impl.py", line 321, in _call_hook
+      raise BackendUnavailable(data.get('traceback', ''))
+  pip._vendor.pyproject_hooks._impl.BackendUnavailable: Traceback (most recent call last):
+    File "/opt/mambaforge/envs/bioconda/conda-bld/pxblat_1688740225962/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 77, in _build_backend
+      obj = import_module(mod_path)
+            ^^^^^^^^^^^^^^^^^^^^^^^
+    File "/opt/mambaforge/envs/bioconda/conda-bld/pxblat_1688740225962/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.11/importlib/__init__.py", line 126, in import_module
+      return _bootstrap._gcd_import(name[level:], package, level)
+             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+    File "<frozen importlib._bootstrap>", line 1204, in _gcd_import
+    File "<frozen importlib._bootstrap>", line 1176, in _find_and_load
+    File "<frozen importlib._bootstrap>", line 1126, in _find_and_load_unlocked
+    File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
+    File "<frozen importlib._bootstrap>", line 1204, in _gcd_import
+    File "<frozen importlib._bootstrap>", line 1176, in _find_and_load
+    File "<frozen importlib._bootstrap>", line 1126, in _find_and_load_unlocked
+    File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
+    File "<frozen importlib._bootstrap>", line 1204, in _gcd_import
+    File "<frozen importlib._bootstrap>", line 1176, in _find_and_load
+    File "<frozen importlib._bootstrap>", line 1126, in _find_and_load_unlocked
+    File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
+    File "<frozen importlib._bootstrap>", line 1204, in _gcd_import
+    File "<frozen importlib._bootstrap>", line 1176, in _find_and_load
+    File "<frozen importlib._bootstrap>", line 1140, in _find_and_load_unlocked
+  ModuleNotFoundError: No module named 'poetry'
+
+  Removed file://$SRC_DIR from build tracker '/private/tmp/pip-build-tracker-m00ixlfd'
+  Removed build tracker: '/private/tmp/pip-build-tracker-m00ixlfd'
+  Traceback (most recent call last):
+    File "/opt/mambaforge/envs/bioconda/bin/conda-mambabuild", line 10, in <module>
+      sys.exit(main())
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
+      call_conda_build(action, config)
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
+      result = api.build(
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
+      return build_tree(
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
+      packages_from_this = build(metadata, stats,
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
+      utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
+      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
+    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
+      raise subprocess.CalledProcessError(proc.returncode, _args)
+  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/mambaforge/envs/bioconda/conda-bld/pxblat_1688740225962/work/conda_build.sh']' returned non-zero exit status 2.
+# Last 100 lines of the build log.
diff --git a/recipes/pxblat/meta.yaml b/recipes/pxblat/meta.yaml
index 6a765fe97fa5c..d1b2a8af9bafd 100644
--- a/recipes/pxblat/meta.yaml
+++ b/recipes/pxblat/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "PxBLAT" %}
-{% set version = "0.3.0" %}
-{% set sha256 = "86a2414757113136c3171d77c58d440a196afb349c118b7a9a9d8bd70cb3ff39" %}
+{% set version = "1.2.1" %}
+{% set sha256 = "b61337bde541be6fc933059d42c51364490775071d96de53a60cefeb0ac16e1a" %}
 
 package:
   name: {{ name|lower }}
@@ -12,31 +12,32 @@ source:
 
 build:
   number: 0
-  script: {{ PYTHON }} -m pip install . --no-deps --use-pep517 -vvv
+  skip: True  # [py < 39]
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
+  entry_points:
+    - pxblat = pxblat.cli.cli:app
+  run_exports:
+    - {{ pin_subpackage('pxblat', max_pin="x") }}
 
 requirements:
   build:
     - {{ compiler('cxx') }}
   host:
-    - python >=3.9
+    - python
     - pip
     - poetry-core >=1.2.0
-    - pybind11 >=2.9.1
+    - pybind11 >2.9.1
     - setuptools >=46.4
-    - htslib
-    - openssl
-    - zlib
   run:
-    - python >=3.9
+    - python
     - loguru
+    - pybind11 >=2.10.4
     - rich
     - pysimdjson
     - biopython
     - typer
     - deprecated
     - mashumaro
-    - numpy >=1.24.3
-    - gevent
     - urllib3
 
 test:
@@ -46,9 +47,8 @@ test:
     - pxblat -h
 
 about:
-  home: 'https://github.com/cauliyang/pxblat'
-  license: MIT
-  license_family: MIT
+  home: 'https://github.com/ylab-hi/pxblat'
+  license: OTHER
   license_file: LICENSE
   summary: "PxBLAT: An Efficient and Ergonomics Python Binding Library for BLAT."
   dev_url: 'https://pypi.org/project/pxblat/'
@@ -57,3 +57,5 @@ about:
 extra:
   recipe-maintainers:
     - yangyangli
+  identifiers:
+    - doi:10.1101/2023.08.02.551686
diff --git a/recipes/py2bit/meta.yaml b/recipes/py2bit/meta.yaml
index d77824737670b..5938010a14d20 100644
--- a/recipes/py2bit/meta.yaml
+++ b/recipes/py2bit/meta.yaml
@@ -3,7 +3,9 @@ package:
   version: "0.3.0"
 
 build:
-  number: 8
+  number: 9
+  run_exports:
+    - {{ pin_subpackage('py2bit', max_pin='x.x') }}
 
 source:
   url: https://files.pythonhosted.org/packages/53/bb/547a927bed736ead3dc909e1e552d57c9034bb9493eff80544c0cf6e4828/py2bit-0.3.0.tar.gz
@@ -27,3 +29,7 @@ about:
   home: https://github.com/deeptools/py2bit
   license: 'MIT'
   summary: 'A package for accessing 2bit files using lib2bit'
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/pyabpoa/build_failure.linux-64.yaml b/recipes/pyabpoa/build_failure.linux-64.yaml
deleted file mode 100644
index a5669bb002f3c..0000000000000
--- a/recipes/pyabpoa/build_failure.linux-64.yaml
+++ /dev/null
@@ -1,104 +0,0 @@
-recipe_sha: 5804b3a09d5237eb69af8814b7323bf010332b9d65e731f0265d1097d449d8c8  # The commit at which this recipe failed to build.
-skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
-log: |2-
-      tree = Parsing.p_module(s, pxd, full_module_name)
-    building 'pyabpoa' extension
-    creating build
-    creating build/temp.linux-x86_64-cpython-38
-    creating build/temp.linux-x86_64-cpython-38/python
-    creating build/temp.linux-x86_64-cpython-38/src
-    /opt/conda/conda-bld/pyabpoa_1685546538587/_build_env/bin/x86_64-conda-linux-gnu-cc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /opt/conda/conda-bld/pyabpoa_1685546538587/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/include -fPIC -O2 -isystem /opt/conda/conda-bld/pyabpoa_1685546538587/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /opt/conda/conda-bld/pyabpoa_1685546538587/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/include -fdebug-prefix-map=/opt/conda/conda-bld/pyabpoa_1685546538587/work=/usr/local/src/conda/pyabpoa-1.4.0 -fdebug-prefix-map=/opt/conda/conda-bld/pyabpoa_1685546538587/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place=/usr/local/src/conda-prefix -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /opt/conda/conda-bld/pyabpoa_1685546538587/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/include -fPIC -Iinclude/ -I/opt/conda/conda-bld/pyabpoa_1685546538587/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/include/python3.8 -c python/pyabpoa.c -o build/temp.linux-x86_64-cpython-38/python/pyabpoa.o -O3 -Wno-error=declaration-after-statement "-DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES" -march=native
-    /opt/conda/conda-bld/pyabpoa_1685546538587/_build_env/bin/x86_64-conda-linux-gnu-cc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /opt/conda/conda-bld/pyabpoa_1685546538587/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/include -fPIC -O2 -isystem /opt/conda/conda-bld/pyabpoa_1685546538587/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /opt/conda/conda-bld/pyabpoa_1685546538587/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/include -fdebug-prefix-map=/opt/conda/conda-bld/pyabpoa_1685546538587/work=/usr/local/src/conda/pyabpoa-1.4.0 -fdebug-prefix-map=/opt/conda/conda-bld/pyabpoa_1685546538587/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place=/usr/local/src/conda-prefix -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /opt/conda/conda-bld/pyabpoa_1685546538587/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/include -fPIC -Iinclude/ -I/opt/conda/conda-bld/pyabpoa_1685546538587/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/include/python3.8 -c src/abpoa_align.c -o build/temp.linux-x86_64-cpython-38/src/abpoa_align.o -O3 -Wno-error=declaration-after-statement "-DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES" -march=native
-    In file included from src/abpoa_graph.h:6,
-                     from src/simd_abpoa_align.h:5,
-                     from src/abpoa_align.c:5:
-    src/utils.h:33:10: fatal error: zlib.h: No such file or directory
-       33 | #include <zlib.h>
-          |          ^~~~~~~~
-    compilation terminated.
-    error: command '/opt/conda/conda-bld/pyabpoa_1685546538587/_build_env/bin/x86_64-conda-linux-gnu-cc' failed with exit code 1
-    [1;31merror[0m: [1msubprocess-exited-with-error[0m
-
-    [31m[0m [32mpython setup.py bdist_wheel[0m did not run successfully.
-    [31m[0m exit code: [1;36m1[0m
-    [31m>[0m See above for output.
-
-    [1;35mnote[0m: This error originates from a subprocess, and is likely not a problem with pip.
-    [1;35mfull command[0m: [34m/opt/conda/conda-bld/pyabpoa_1685546538587/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/bin/python -u -c '[0m
-  [34m  exec(compile('"'"''"'"''"'"'[0m
-  [34m  # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py[0m
-  [34m  #[0m
-  [34m  # - It imports setuptools before invoking setup.py, to enable projects that directly[0m
-  [34m  #   import from distutils.core to work with newer packaging standards.[0m
-  [34m  # - It provides a clear error message when setuptools is not installed.[0m
-  [34m  # - It sets sys.argv[0] to the underlying setup.py, when invoking setup.py so[0m
-  [34m  #   setuptools doesn'"'"'t think the script is -c. This avoids the following warning:[0m
-  [34m  #     manifest_maker: standard file '"'"'-c'"'"' not found".[0m
-  [34m  # - It generates a shim setup.py, for handling setup.cfg-only projects.[0m
-  [34m  import os, sys, tokenize[0m
-  [34m  [0m
-  [34m  try:[0m
-  [34m      import setuptools[0m
-  [34m  except ImportError as error:[0m
-  [34m      print([0m
-  [34m          "ERROR: Can not execute setup.py since setuptools is not available in "[0m
-  [34m          "the build environment.",[0m
-  [34m          file=sys.stderr,[0m
-  [34m      )[0m
-  [34m      sys.exit(1)[0m
-  [34m  [0m
-  [34m  __file__ = %r[0m
-  [34m  sys.argv[0] = __file__[0m
-  [34m  [0m
-  [34m  if os.path.exists(__file__):[0m
-  [34m      filename = __file__[0m
-  [34m      with tokenize.open(__file__) as f:[0m
-  [34m          setup_py_code = f.read()[0m
-  [34m  else:[0m
-  [34m      filename = "<auto-generated setuptools caller>"[0m
-  [34m      setup_py_code = "from setuptools import setup; setup()"[0m
-  [34m  [0m
-  [34m  exec(compile(setup_py_code, filename, "exec"))[0m
-  [34m  '"'"''"'"''"'"' % ('"'"'/opt/conda/conda-bld/pyabpoa_1685546538587/work/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-ebxgjt9j[0m
-    [1;35mcwd[0m: /opt/conda/conda-bld/pyabpoa_1685546538587/work/
-    Building wheel for pyabpoa (setup.py): finished with status 'error'
-  [31m  ERROR: Failed building wheel for pyabpoa[0m[31m
-  [0m  Running setup.py clean for pyabpoa
-    Running command python setup.py clean
-    running clean
-    removing 'build/temp.linux-x86_64-cpython-38' (and everything under it)
-    'build/lib.linux-x86_64-cpython-38' does not exist -- can't clean it
-    'build/bdist.linux-x86_64' does not exist -- can't clean it
-    'build/scripts-3.8' does not exist -- can't clean it
-    removing 'build'
-  Failed to build pyabpoa
-  [31mERROR: Could not build wheels for pyabpoa, which is required to install pyproject.toml-based projects[0m[31m
-  [0mException information:
-  Traceback (most recent call last):
-    File "$PREFIX/lib/python3.8/site-packages/pip/_internal/cli/base_command.py", line 169, in exc_logging_wrapper
-      status = run_func(*args)
-    File "$PREFIX/lib/python3.8/site-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
-      return func(self, options, args)
-    File "$PREFIX/lib/python3.8/site-packages/pip/_internal/commands/install.py", line 426, in run
-      raise InstallationError(
-  pip._internal.exceptions.InstallationError: Could not build wheels for pyabpoa, which is required to install pyproject.toml-based projects
-  Removed build tracker: '/tmp/pip-build-tracker-5c_b8prp'
-  Traceback (most recent call last):
-    File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
-      sys.exit(main())
-    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
-      call_conda_build(action, config)
-    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
-      result = api.build(
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
-      return build_tree(
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
-      packages_from_this = build(metadata, stats,
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
-      utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
-      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
-      raise subprocess.CalledProcessError(proc.returncode, _args)
-  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/pyabpoa_1685546538587/work/conda_build.sh']' returned non-zero exit status 1.
-# Last 100 lines of the build log.
diff --git a/recipes/pyabpoa/meta.yaml b/recipes/pyabpoa/meta.yaml
index 2eb9976ff271b..b99ebbd5a2c25 100644
--- a/recipes/pyabpoa/meta.yaml
+++ b/recipes/pyabpoa/meta.yaml
@@ -1,46 +1,48 @@
 {% set name = "pyabpoa" %}
-{% set version = "1.4.0" %}
-
+{% set version = "1.5.1" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/pyabpoa-{{ version }}.tar.gz
-  sha256: 7880aff37e8fcc22cb4806ecc40628521d047df4b5aaf75b679ea82ecb24a335
+  url: https://github.com/yangao07/abPOA/releases/download/v{{ version }}/abPOA-v{{ version }}.tar.gz
+  sha256: f0e1b41b1c9e18ecd2096df9b60ad053260ec773d70eecb307b02cca0efab89d
 
 build:
-  number: 2
-  script: rm -f python/*.c; {{ PYTHON }} -m pip install . -vv
+  number: 1
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation --use-pep517 -vvv
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   build:
     - {{ compiler('c') }}
   host:
-    - cython
-    - pip
     - python
+    - pip
+    - cython
+    - zlib
   run:
     - python
-    - cython
 
 test:
   imports:
     - pyabpoa
-  commands:
-    - pip check
-  requires:
-    - pip
 
 about:
   home: https://github.com/yangao07/abPOA
   summary: 'pyabpoa: SIMD-based partial order alignment using adaptive band'
   license: MIT
+  license_family: MIT
   license_file: LICENSE
+  dev_url: https://github.com/yangao07/abPOA
 
 extra:
-  skip-lints:
-    - cython_must_be_in_host
   recipe-maintainers:
     - bkille
+  identifiers:
+    - doi:10.1093/bioinformatics/btaa963
+    - biotools:abpoa
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/pybarrnap/meta.yaml b/recipes/pybarrnap/meta.yaml
new file mode 100644
index 0000000000000..1e2657be3e50e
--- /dev/null
+++ b/recipes/pybarrnap/meta.yaml
@@ -0,0 +1,46 @@
+{% set name = "pybarrnap" %}
+{% set version = "0.5.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/pybarrnap-{{ version }}.tar.gz
+  sha256: 9578c1677c60dfe7f12bccfd1613048918068289b0dc04b3d0396e699fd09073
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - pybarrnap = pybarrnap.scripts.pybarrnap:main
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  run_exports:
+    - {{ pin_subpackage('pybarrnap', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.8
+    - poetry-core >=1.0.0
+    - pip
+  run:
+    - python >=3.8
+    - biopython >=1.79
+    - pyhmmer >=0.10.8
+
+test:
+  imports:
+    - pybarrnap
+  commands:
+    - pybarrnap --help
+
+about:
+  home: https://github.com/moshi4/pybarrnap/
+  summary: "Python implementation of barrnap (Bacterial ribosomal RNA predictor)"
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - moshi4
diff --git a/recipes/pybbi/build.sh b/recipes/pybbi/build.sh
index 30ca49f7465cb..1b120b41391c2 100644
--- a/recipes/pybbi/build.sh
+++ b/recipes/pybbi/build.sh
@@ -2,5 +2,4 @@
 
 export C_INCLUDE_PATH=$PREFIX/include
 export LIBRARY_PATH=$PREFIX/lib
-sed -i.bak "89,92d" setup.py
 $PYTHON -m pip install . --no-deps --ignore-installed -vv
diff --git a/recipes/pybbi/meta.yaml b/recipes/pybbi/meta.yaml
index 191b3ebda4dd1..6277bd7c5c715 100644
--- a/recipes/pybbi/meta.yaml
+++ b/recipes/pybbi/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pybbi" %}
-{% set version = "0.3.2" %}
+{% set version = "0.4.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,11 +7,13 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: "857805f47e27ffecd742e60c35256ec623cebba7c0eb388905ad8090c1db0fd7"
+  sha256: "afafbc23f16f789344a454fce619af5556a67a2e11b7c36de8fc6f091e2478fc"
 
 build:
-  number: 2
+  number: 0
   skip: True  # [py2k or osx]
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
 
 requirements:
   build:
diff --git a/recipes/pybedlite/meta.yaml b/recipes/pybedlite/meta.yaml
index 88ddd08ab27ed..a8a863f8a6ae5 100644
--- a/recipes/pybedlite/meta.yaml
+++ b/recipes/pybedlite/meta.yaml
@@ -1,32 +1,35 @@
 {% set name = "pybedlite" %}
-{% set version = "0.0.3" %}
-
+{% set version = "0.1.0" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://github.com/fulcrumgenomics/{{ name }}/archive/refs/tags/{{ version }}.tar.gz
-  sha256: ca905bf9390bb5ea209cdc3326d845c8ff2c13753016de29a2bda58d4a472fe9
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/pybedlite-{{ version }}.tar.gz
+  sha256: d7296b876d2093e7b877bea0e5d347353282c5d6cd110dcd03d5851f5eeda7dc
 
 build:
-  noarch: python
+  skip: True  # [py < 38]
   number: 0
-  script: {{ PYTHON }} -m pip install . -vv --no-deps
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps
+  run_exports:
+    - {{ pin_subpackage('pybedlite', max_pin="x") }}
 
 requirements:
+  build:
+    - {{ compiler('c') }}
   host:
     - pip
-    - python >=3.6
-    - poetry
-    - cgranges >=0.1
+    - python
+    - poetry-core
+    - cython
   run:
-    - python >=3.6
+    - python
     - cgranges >=0.1
     - typing_extensions >=3.7.4
     - typing_inspect >=0.3.1
-    - attrs >=19.3.0
+    - attrs >=23.0.0
 
 test:
   imports:
@@ -36,7 +39,10 @@ about:
   home: https://pypi.org/project/pybedlite/
   summary: Lightweight python classes for interfacing with bed intervals
   license: MIT
+  license_family: MIT
   license_file: LICENSE
+  dev_url: https://github.com/fulcrumgenomics/pybedlite
+  doc_url: https://pybedlite.readthedocs.io/en/latest/
 
 extra:
   recipe-maintainers:
diff --git a/recipes/pybedtools/build.sh b/recipes/pybedtools/build.sh
index 9eea3edc58935..c767c7e1d7310 100644
--- a/recipes/pybedtools/build.sh
+++ b/recipes/pybedtools/build.sh
@@ -1,6 +1,9 @@
 #!/bin/bash
-export CPATH=${PREFIX}/include
-$PYTHON setup.py install --single-version-externally-managed --record=rec.txt
+
+export C_INCLUDE_PATH="${PREFIX}/include"
+export LIBPATH="-L${PREFIX}/lib"
+
+${PYTHON} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv
 
 # Add more build steps here, if they are necessary.
 
diff --git a/recipes/pybedtools/meta.yaml b/recipes/pybedtools/meta.yaml
index 21a85d68d3cd1..b9fb582b6ecfb 100644
--- a/recipes/pybedtools/meta.yaml
+++ b/recipes/pybedtools/meta.yaml
@@ -1,31 +1,33 @@
+{% set name = "pybedtools" %}
+{% set version = "0.10.0" %}
+
 package:
-  name: pybedtools
-  version: '0.9.0'
+  name: {{ name }}
+  version: {{ version }}
 
 source:
-  url: https://files.pythonhosted.org/packages/58/e2/410bb188b47582e2fd2f7176173b7b7bf46e122bb17fb4422552f4a6c604/pybedtools-0.9.0.tar.gz
-  sha256: 9267c92cd764173449d9c31baedac0659b4eccc3d7c05e22ec378f86c0fc30a3
+  url: https://files.pythonhosted.org/packages/cc/90/cea4197772a029e925bd5d414108b5438d621dfbb1b0cc2627529d1ec524/pybedtools-0.10.0.tar.gz
+  sha256: 1a6fbaad23b013becc741d7d5922a2df03e391bc44ff92772ffb7dd456711161
 
 build:
-  skip: True  # [py2k]
-  number: 2
+  skip: True  # [py < 36]
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("pybedtools", max_pin="x.x") }}
 
 requirements:
   build:
     - {{ compiler('cxx') }}
   host:
     - python
-    - six
-    #- pysam >=0.16
-    - setuptools
-    #- pandas
+    - pip
+    - cython
     - zlib
   run:
     - python
     - bedtools
-    - six
-    - pysam >=0.16
-    - pandas
+    - numpy
+    - pysam
 
 test:
   imports:
@@ -36,8 +38,14 @@ test:
 about:
   home: https://github.com/daler/pybedtools
   license: MIT
+  license_family: MIT
+  license_file: LICENSE.txt
   summary: Wraps BEDTools for use in Python and adds many additional features.
+  dev_url: https://github.com/daler/pybedtools
+  doc_url: https://daler.github.io/pybedtools
 
 extra:
   identifiers:
     - biotools:pybedtools
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/pybigtools/build.sh b/recipes/pybigtools/build.sh
new file mode 100644
index 0000000000000..cefe90b6b78af
--- /dev/null
+++ b/recipes/pybigtools/build.sh
@@ -0,0 +1,32 @@
+#!/bin/bash
+
+# -e = exit on first error
+# -x = print every executed command
+set -ex
+
+# Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
+# We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
+export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="${BUILD_PREFIX}/.cargo"
+
+# Use a custom temporary directory as home on macOS.
+# (not sure why this is useful, but people use it in bioconda recipes)
+if [ `uname` == Darwin ]; then
+	export HOME=`mktemp -d`
+fi
+
+# Build statically linked binary with Rust
+# Note: This sdist is a bit wonky because it was generated from a monorepo by running maturin sdist
+RUST_BACKTRACE=1 
+
+# Creating the sdist from the monorepo placed pyproject.toml one level above Cargo.toml.
+# The wheels don't seem to install as expected unless pyproject.toml is moved back into the source dir.
+mv pyproject.toml pybigtools/
+
+# Run maturin build to produce *.whl files.
+maturin build -m pybigtools/Cargo.toml -b pyo3 --interpreter "${PYTHON}" --release --strip
+
+# Install *.whl files using pip
+${PYTHON} -m pip install pybigtools/target/wheels/*.whl --no-deps --no-build-isolation --no-cache-dir -vvv
+
+# Move the LICENSE file to the root dir
+mv pybigtools/LICENSE .
\ No newline at end of file
diff --git a/recipes/pybigtools/meta.yaml b/recipes/pybigtools/meta.yaml
new file mode 100644
index 0000000000000..5885a7aaa49c8
--- /dev/null
+++ b/recipes/pybigtools/meta.yaml
@@ -0,0 +1,45 @@
+{% set name = "pybigtools" %}
+{% set version = "0.1.4" %}
+{% set sha256 = "79650f78178b05c293843c378d455b60f98119d5201d09938a62d41d4e0bd313" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('pybigtools', max_pin="x.x") }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('rust') }}
+  host:
+    - pip
+    - python
+    - maturin
+  run:
+    - python
+    - numpy
+
+test:
+  imports:
+    - pybigtools
+
+about:
+  home: https://github.com/jackh726/bigtools/
+  license: MIT
+  summary: 'pybigtools: Python bindings to the Bigtools Rust library for high-performance BigWig and BigBed I/O'
+  license_family: MIT
+  license_file: LICENSE
+  doc_url: https://bigtools.readthedocs.io
+  dev_url: https://github.com/jackh726/bigtools/
+
+extra:
+  identifiers:
+    - doi:10.5281/zenodo.10606493
diff --git a/recipes/pybigwig/build.sh b/recipes/pybigwig/build.sh
index 24412f55aa1c3..241c28a9c0951 100644
--- a/recipes/pybigwig/build.sh
+++ b/recipes/pybigwig/build.sh
@@ -1,4 +1,4 @@
 #!/bin/bash
 
 export C_INCLUDE_PATH=$PREFIX/include
-$PYTHON setup.py install --single-version-externally-managed --record=record.txt
+$PYTHON -m pip install --no-deps --no-build-isolation . -vvv
diff --git a/recipes/pybigwig/meta.yaml b/recipes/pybigwig/meta.yaml
index 426ae16d1509d..be5c68cf5d54e 100644
--- a/recipes/pybigwig/meta.yaml
+++ b/recipes/pybigwig/meta.yaml
@@ -9,15 +9,17 @@ source:
   sha256: 5d4426f754bd7b7f6dc21d6c3f93b58a96a65b6eb2e578ae03b31a71272d2243
 
 build:
-  skip: true  # [py2k]
-  number: 1
+  skip: True  # [py < 37]
+  number: 2
+  run_exports:
+    - {{ pin_subpackage('pybigwig', max_pin="x.x") }}
 
 requirements:
   build:
     - {{ compiler('c') }}
   host:
     - python
-    - setuptools
+    - pip
     - curl
     - libcurl
     - zlib
@@ -37,5 +39,11 @@ test:
 about:
   home: https://github.com/dpryan79/pyBigWig
   license: MIT
+  license_family: MIT
   license_file: LICENSE.txt
   summary: A python extension written in C for quick access to bigWig files.
+  dev_url: https://github.com/dpryan79/pyBigWig
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/pybiolib/meta.yaml b/recipes/pybiolib/meta.yaml
index ddd7a61b09d6e..ba860d6ce3de6 100644
--- a/recipes/pybiolib/meta.yaml
+++ b/recipes/pybiolib/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pybiolib" %}
-{% set version = "1.1.1101" %}
+{% set version = "1.1.2109" %}
 
 package:
   name: {{ name|lower }}
@@ -7,12 +7,14 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/pybiolib-{{ version }}.tar.gz
-  sha256: a1fec6056eb3cea23dad05310eea67ec5783b878a3f88a23bb667550fde2afe3
+  sha256: a2a017270de5bc4231d4598defca028b78dc4e21368599cfc6afda4c52538af1
 
 build:
   noarch: python
   script: {{ PYTHON }} -m pip install . -vv
   number: 0
+  run_exports:
+    - {{ pin_subpackage('pybiolib', max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/pychopper/meta.yaml b/recipes/pychopper/meta.yaml
index 107b6f615ed90..d747c663fb446 100644
--- a/recipes/pychopper/meta.yaml
+++ b/recipes/pychopper/meta.yaml
@@ -1,18 +1,20 @@
 {% set name = "pychopper" %}
-{% set version = "2.5.0" %}
+{% set version = "2.7.9" %}
 
 package:
   name: "{{ name|lower }}"
   version: "{{ version }}"
 
 source:
-  url: https://github.com/nanoporetech/pychopper/archive/v{{ version }}.tar.gz
-  sha256: 1800a2c5e19f2a025da579608e87ec1a802cf5196fc9e8fed936cb09e2e5e465
+  url: https://github.com/epi2me-labs/pychopper/archive/v{{ version }}.tar.gz
+  sha256: 630d644fbafc3199609e111c1522dc47864c1bfde5cc9682d796974acb97ac70
 
 build:
   noarch: python
   number: 0
   script: {{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv
+  run_exports:
+    - {{ pin_subpackage('pychopper', max_pin="x") }}
 
 requirements:
   host:
@@ -28,13 +30,15 @@ requirements:
     - seaborn
     - six
     - pandas
+    - numpy
+    - pysam
 
 test:
   commands:
-    - cdna_classifier.py --help
+    - pychopper --help
 
 about:
-  home: https://github.com/nanoporetech/pychopper
-  license: MPL2
+  home: https://github.com/epi2me-labs/pychopper
+  license: Mozilla Public License 2.0
   summary: A tool to identify, orient and rescue full length cDNA reads from nanopore data.
   license_file: LICENSE.md
diff --git a/recipes/pycomo/meta.yaml b/recipes/pycomo/meta.yaml
new file mode 100644
index 0000000000000..a92c2b57fa40f
--- /dev/null
+++ b/recipes/pycomo/meta.yaml
@@ -0,0 +1,50 @@
+{% set name = "pycomo" %}
+{% set version = "0.1.3" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/pycomo-{{ version }}.tar.gz
+  sha256: be95b8610a3b40ca69dd5ed055356c6bdb838059c66afa796343ea624b07be6c
+
+build:
+  entry_points:
+    - pycomo = pycomo.pycomo_models:main
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+  - {{ pin_subpackage('pycomo', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.9
+    - setuptools
+    - pip
+  run:
+    - python >=3.9
+    - cobra >=0.23.0
+    - pandas >=1.5.3
+    - python-libsbml >=5.20.1
+    - numpy >=1.22.4
+
+test:
+  imports:
+    - pycomo
+  commands:
+    - pip check
+    - pycomo --help
+  requires:
+    - pip
+
+about:
+  home: https://github.com/univieCUBE/PyCoMo
+  summary: PyCoMo is a software package for generating and analysing compartmentalized community metabolic models
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - mpredl
diff --git a/recipes/pycov3/meta.yaml b/recipes/pycov3/meta.yaml
new file mode 100644
index 0000000000000..f5ac7f49a1a19
--- /dev/null
+++ b/recipes/pycov3/meta.yaml
@@ -0,0 +1,45 @@
+{% set name = "pycov3" %}
+{% set version = "2.1.0" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: 7fcd34f840fb93b0e951eca51f23b4df7548412577d9bc4a6e1fbf855b97329a
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - pycov3 = pycov3.cli:main
+  script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage('pycov3', max_pin="x") }}
+
+requirements:
+  host:
+    - pip
+    - python
+  run:
+    - python
+
+test:
+  imports:
+    - pycov3
+  commands:
+    - pycov3 --help
+
+about:
+  home: https://github.com/Ulthran/pycov3
+  license: MIT
+  license_family: MIT
+  license_file: 
+  summary: "Generate cov3 files used in DEMIC"
+  doc_url: 
+  dev_url: https://github.com/Ulthran/pycov3
+
+extra:
+  recipe-maintainers:
+    - Ulthran
diff --git a/recipes/pydamage/meta.yaml b/recipes/pydamage/meta.yaml
index 07840b52166fa..10d38b9c95b16 100644
--- a/recipes/pydamage/meta.yaml
+++ b/recipes/pydamage/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pydamage" %}
-{% set version = "0.70" %}
+{% set version = "0.72" %}
 
 
 package:
@@ -8,13 +8,15 @@ package:
 
 source:
   url: https://github.com/maxibor/{{ name }}/archive/refs/tags/{{ version }}.tar.gz
-  sha256: f06d76686cfd86e048a7663d3da460ad2cfccc899909f7a77e5aed307622f5d9
+  sha256: a386cf89df86ea811660d93936d8153dad05ec79b1d2984dc86b14420e5ae139
 
 build:
-  number: 1
+  number: 0
   noarch: python
   entry_points:
     - pydamage = pydamage.cli:cli
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
   script: {{ PYTHON }} -m pip install . --no-deps -vv
 
 requirements:
@@ -38,10 +40,7 @@ test:
   imports:
     - pydamage
   commands:
-    - pip check
     - pydamage --help
-  requires:
-    - pip
 
 about:
   home: https://github.com/maxibor/pydamage
diff --git a/recipes/pydbsnp/meta.yaml b/recipes/pydbsnp/meta.yaml
new file mode 100644
index 0000000000000..aaf56010068e2
--- /dev/null
+++ b/recipes/pydbsnp/meta.yaml
@@ -0,0 +1,50 @@
+{% set name = "pydbsnp" %}
+{% set version = "2.0.2" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/pydbsnp-{{ version }}.tar.gz
+  sha256: 07259a3bd1412e72664c908f364dccb7f6a5ae28e44a012620fd8959a4aa296b
+
+build:
+  entry_points:
+    - pydbsnp-download=pydbsnp.download:main
+    - pydbsnp-index=pydbsnp.index:main
+    - pydbsnp-query=pydbsnp.query:main
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_compatible(name, max_pin="x") }}
+
+requirements:
+  host:
+    - python
+    - pip
+  run:
+    - python
+    - pysam
+
+test:
+  imports:
+    - pydbsnp
+  commands:
+    - pip check
+    - pydbsnp-download --help
+    - pydbsnp-index --help
+    - pydbsnp-query --help
+  requires:
+    - pip
+
+about:
+  home: https://gitlab.com/aaylward/pydbsnp
+  summary: Interface with dbSNP VCF data
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - JohannesGawron
diff --git a/recipes/pydeseq2/meta.yaml b/recipes/pydeseq2/meta.yaml
index 588d4261b4f75..245e1501865d3 100644
--- a/recipes/pydeseq2/meta.yaml
+++ b/recipes/pydeseq2/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pydeseq2" %}
-{% set version = "0.3.5" %}
+{% set version = "0.4.9" %}
 
 package:
   name: {{ name|lower }}
@@ -7,27 +7,28 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/pydeseq2-{{ version }}.tar.gz
-  sha256: 3047c88fd624dddf28479283fda9ea37239e510c58e303cb76afa8b58bd491b9
+  sha256: 0375207775953f43f84ed4279fcb9f11a430d79d038e158bbe74acbc58326d31
 
 build:
   noarch: python
-  script: {{ PYTHON }} -m pip install . -vv
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
   number: 0
+  run_exports:
+    - {{ pin_subpackage('pydeseq2', max_pin="x") }}
 
 requirements:
   host:
-    - python >=3.8
+    - python >=3.9
     - pip
   run:
-    - python >=3.8
+    - python >=3.9
     - anndata >=0.8.0
     - jupyter
     - ipython
     - numpy >=1.23.0
     - pandas >=1.4.0
     - scikit-learn >=1.1.0
-    - scipy >=1.8.0
-    - statsmodels
+    - scipy >=1.11.0
     - matplotlib-base >=3.6.2
 
 test:
@@ -42,6 +43,7 @@ about:
   home: https://github.com/owkin/PyDESeq2
   summary: A python implementation of DESeq2.
   license: MIT
+  license_family: MIT
   license_file: LICENSE
 
 extra:
diff --git a/recipes/pyega3/meta.yaml b/recipes/pyega3/meta.yaml
index 76e3b71ca8c72..5e8ff430248aa 100644
--- a/recipes/pyega3/meta.yaml
+++ b/recipes/pyega3/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pyega3" %}
-{% set version = "5.0.2" %}
+{% set version = "5.2.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,25 +7,28 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 677f49564ff3178291ce14a7dcd4032a10bf8505d3f5c07ded13565302a89336
+  sha256: 95539b8e153f2311d89a6905723598013fd12a9d0784a911ed1b550a4094bad1
 
 build:
   number: 0
   entry_points:
     - pyega3 = pyega3.pyega3:main
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv "
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('pyega3', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - python >3
+    - python >=3.6
   run:
-    - python >3
+    - python >=3.6
     - python-htsget
     - requests
-    - tqdm >=4.26.0 
+    - tqdm >=4.26.0
     - psutil
+    - urllib3
 
 test:
   imports:
diff --git a/recipes/pyensembl/meta.yaml b/recipes/pyensembl/meta.yaml
index 628e1c4aa639d..fedc72c441759 100644
--- a/recipes/pyensembl/meta.yaml
+++ b/recipes/pyensembl/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "PyEnsembl" %}
-{% set version = "2.1.0" %}
-{% set sha256 = "f3e15de45b000567fef8cc3126d87ea51aa663a83cc26b4560461729759e6ce9" %}
+{% set version = "2.3.13" %}
+{% set sha256 = "c70ce760f68fe2a6be871db44e53ce1d4d1227f2ce0578c6b291d5a89f5d1832" %}
 
 package:
   name: {{ name|lower }}
@@ -16,6 +16,8 @@ build:
   script: python -m pip install --no-deps --ignore-installed .
   entry_points:
     - pyensembl = pyensembl.shell:run
+  run_exports:
+    - {{ pin_subpackage("pyensembl", max_pin="x") }}
 
 requirements:
   host:
@@ -27,10 +29,10 @@ requirements:
     - typechecks >=0.0.2
     - numpy >=1.7
     - pandas >=0.15
-    - datacache >=0.4.19
+    - datacache >=1.1.4
     - memoized-property >=1.0.2
     - six >=1.9.0
-    - gtfparse >=0.0.3
+    - gtfparse >=1.3.0
     - serializable
     - tinytimer
     - pylint >=1.4.4
diff --git a/recipes/pyfaidx/meta.yaml b/recipes/pyfaidx/meta.yaml
index 995641fe44ad4..eb721ce14f0d7 100644
--- a/recipes/pyfaidx/meta.yaml
+++ b/recipes/pyfaidx/meta.yaml
@@ -1,39 +1,42 @@
-{% set version = "0.7.2.1" %}
+{% set version = "0.8.1.1" %}
 
 package:
   name: pyfaidx
   version: {{ version }}
 
 source:
-  url: https://files.pythonhosted.org/packages/41/f0/3790aa6676987db69f7c7eeb01096d7836196f3c10d025a2e038f9e84728/pyfaidx-0.7.2.1.tar.gz
-  sha256: 30f0d20a9e3d53353fb20eb69b7e22e6f01a53ed4f21b3e17dd408f0be5051a0
+  url: https://files.pythonhosted.org/packages/0e/32/a89e956d4f27bd8ab4d92f6b27e46386975add4ad13e54504012afa3d025/pyfaidx-0.8.1.1.tar.gz
+  sha256: 6f0482352619f2cc56003ca22321bdb0d0764b656795bc1e4062b1fa9b08686b
 
 build:
-  number: 1
+  number: 0
   noarch: python
+  script_env:
+    - SETUPTOOLS_SCM_PRETEND_VERSION={{ version }}
   entry_points:
     - faidx = pyfaidx.cli:main
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage('pyfaidx', max_pin="x") }}
 
 requirements:
   host:
-    - python
+    - python >=3.7
     - pip
     - setuptools-scm
-
   run:
-    - python
+    - python >=3.7
     - six
     - setuptools  # uses pkg_resources
     # the following are not mentioned in setup.py but conditionally imported at runtime
     - packaging  # https://github.com/mdshw5/pyfaidx/blob/58d8b4e381f1348b9e669d55d88019e2498c71de/pyfaidx/__init__.py#L398
     - pyvcf3  # https://github.com/mdshw5/pyfaidx/blob/58d8b4e381f1348b9e669d55d88019e2498c71de/pyfaidx/__init__.py#L1183
     - biopython  # https://github.com/mdshw5/pyfaidx/blob/58d8b4e381f1348b9e669d55d88019e2498c71de/pyfaidx/__init__.py#L396
+    - importlib-metadata
 
 test:
   imports:
     - pyfaidx
-
   commands:
     - faidx --help
 
@@ -42,6 +45,8 @@ about:
   license: BSD License
   summary: 'pyfaidx: efficient pythonic random access to fasta subsequences'
   license_family: BSD
+  license_file: LICENSE
+  doc_url: https://pythonhosted.org/pyfaidx/
 
 extra:
   identifiers:
diff --git a/recipes/pyfamsa/meta.yaml b/recipes/pyfamsa/meta.yaml
index f498a86a20aac..f0be2d59db35b 100644
--- a/recipes/pyfamsa/meta.yaml
+++ b/recipes/pyfamsa/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pyfamsa" %}
-{% set version = "0.2.0" %}
+{% set version = "0.4.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 26b04a709d5cb7317c89141e7d6edc2e0d3af16f4c002b2e59e33ab145d199dd
+  sha256: 9a09e04079b5d6401b62fed2b80886ffdd5626c30686697ff8c2b38e018e6e87
 
 build:
-  number: 2
-  skip: True  #[py2k]
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vvv "
+  number: 0
+  skip: True  # [py2k]
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --use-pep517 -vvv"
+  run_exports:
+    - {{ pin_subpackage('pyfamsa', max_pin="x.x") }}
 
 requirements:
   build:
@@ -22,11 +24,11 @@ requirements:
     - python
     - pip
     - cython
-    - setuptools
     - semantic_version
+    - scoring-matrices >=0.2
   run:
     - python
-    - setuptools
+    - scoring-matrices >=0.2
 
 test:
   imports:
@@ -36,12 +38,15 @@ test:
 
 about:
   home: https://github.com/althonos/pyfamsa
-  license: GPL-3
-  license_family: GPL
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: COPYING
   summary: Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
   doc_url: https://pyfamsa.readthedocs.org/
+  dev_url: https://github.com/althonos/pyfamsa
 
 extra:
   recipe-maintainers:
     - althonos
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/pyfastani/meta.yaml b/recipes/pyfastani/meta.yaml
index 7f8c1496bd166..d85b7057c9ad7 100644
--- a/recipes/pyfastani/meta.yaml
+++ b/recipes/pyfastani/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pyfastani" %}
-{% set version = "0.4.1" %}
+{% set version = "0.5.1" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 44d86cbe8581d4891748ebe9851ae0a0c27489bb9f77728131415ed6b90cc35a
+  sha256: ad6c28303290a2389c29ed20db8266bbc4bf89a5b1bf64a7514d1bc9c6ba2d92
 
 build:
-  number: 3
+  number: 0
   skip: True  #[py2k]
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vvv "
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   build:
diff --git a/recipes/pyfastx/meta.yaml b/recipes/pyfastx/meta.yaml
index 9974250d4e6d8..0dfaf051f3fb7 100644
--- a/recipes/pyfastx/meta.yaml
+++ b/recipes/pyfastx/meta.yaml
@@ -1,20 +1,23 @@
-{% set version = "1.1.0" %}
+{% set name = "pyfastx" %}
+{% set version = "2.1.0" %}
+{% set sha256 = "a3458bba4fa19a637d9ec8bdf9bfdd6e7321a916aeca674d02aa0fe5aeee1c95" %}
 
 package:
-  name: pyfastx
+  name: {{ name|lower }}
   version: {{ version }}
 
 source:
   url: https://github.com/lmdu/pyfastx/archive/{{ version }}.tar.gz
-  sha256: b9974b21d21067350694ea37d33f99647255546b90eee8addeb74c8d18d824e8
-
+  sha256: {{ sha256 }}
 
 build:
-  number: 3
-  script: {{ PYTHON }} -m pip install . --no-deps -vv
-  skip: True  # [py2k]
+  number: 1
+  script: {{ PYTHON }} -m pip install . --no-deps -vvv
+  skip: True  # [py < 36]
   entry_points:
     - pyfastx = pyfastxcli:main
+  run_exports:
+    - {{ pin_subpackage('pyfastx', max_pin="x") }}
 
 requirements:
   build:
@@ -24,7 +27,6 @@ requirements:
     - zlib
     - pip
   run:
-    - zlib
     - python
 
 test:
@@ -36,8 +38,13 @@ test:
 about:
   home: https://github.com/lmdu/pyfastx
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary:  |
           pyfastx is a python module for fast random
           access to sequences from plain and gzipped
           FASTA/Q file
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/pygenetic_code/meta.yaml b/recipes/pygenetic_code/meta.yaml
new file mode 100644
index 0000000000000..f09a44c1ff4fb
--- /dev/null
+++ b/recipes/pygenetic_code/meta.yaml
@@ -0,0 +1,49 @@
+{% set name = "pygenetic_code" %}
+{% set version = "0.20.0" %}
+{% set sha256 = "2d4773e4e8a8b994e604b986ce831b12bbf68b41780e24377bfc14639e017423" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: '{{ version }}'
+
+source:
+  url: "https://files.pythonhosted.org/packages/b6/6f/034dc48dd7768cb5aecabb4c2b68e5ff48d7fea6ee3fc51fed7a068e7c11/{{ name }}-{{ version }}.tar.gz"
+  sha256: '{{ sha256 }}'
+
+build:
+  number: 0
+  script: "{{ PYTHON }} -m pip install . --no-deps -vv "
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+    
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - make
+    - cmake >=3.15
+  host:
+    - python >=3
+    - pip
+    - scikit-build-core
+    - zlib
+  run:
+    - python >=3
+
+test:
+  commands:
+    - pygenetic_code --help
+    - pygenetic_code --version
+
+about:
+  home: https://github.com/linsalrob/genetic_codes
+  license: MIT
+  license_family: MIT
+  summary: 'Python code for translating sequences using different NCBI translation tables and genetic codes'
+  dev_url: https://github.com/linsalrob/genetic_codes
+
+extra:
+  recipe-maintainers:
+    - linsalrob
+  identifiers:
+    - doi:10.5281/zenodo.10450718
+
diff --git a/recipes/pygenometracks/meta.yaml b/recipes/pygenometracks/meta.yaml
index 4740ac13a2783..1e01c905fb456 100644
--- a/recipes/pygenometracks/meta.yaml
+++ b/recipes/pygenometracks/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pyGenomeTracks" %}
-{% set version = "3.8" %}
+{% set version = "3.9" %}
  
 package:
   name: {{ name | lower }}
@@ -7,21 +7,23 @@ package:
 
 source:
   url: https://github.com/deeptools/pyGenomeTracks/archive/{{ version }}.tar.gz
-  sha256: 16ea187b97a4ee5358cccc095e4b277aa11a626a7b3824710f9dcf0ef6ce98be
+  sha256: 4318cb642422ee16d83675d571f4cd49b14784d7ee135ab53d8946fc7ad663f6
 
 build:
   number: 0
-  script: "{{ PYTHON }} -m pip install . --no-deps -vv"
   noarch: python
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
+  run_exports:
+    - {{ pin_subpackage('pygenometracks', max_pin="x") }}
 
 requirements:
   host:
-    - python >=3.7
+    - python >=3.8
     - pip
   run:
-    - python >=3.7
+    - python >=3.8
     - numpy >=1.20
-    - matplotlib-base >=3.1.1,<=3.6.2
+    - matplotlib-base >=3.1.1,<3.9
     - intervaltree >=2.1.0
     - pybigwig >=0.3.16
     - future >=0.17.0
diff --git a/recipes/pygenomeviz/meta.yaml b/recipes/pygenomeviz/meta.yaml
index a55d1e7ad0005..ca5040a1cf463 100644
--- a/recipes/pygenomeviz/meta.yaml
+++ b/recipes/pygenomeviz/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pygenomeviz" %}
-{% set version = "0.3.2" %}
+{% set version = "0.4.4" %}
 
 package:
   name: {{ name|lower }}
@@ -7,7 +7,7 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/pygenomeviz-{{ version }}.tar.gz
-  sha256: e7c2ce14fc65828578179f19c74fd8d59561f199b08480a197be81e8344ce9bd
+  sha256: 0e3566fba142f522efa363ace1d95cb1af4701e42fdb1e51fbf35840a5347c86
 
 build:
   entry_points:
@@ -16,9 +16,12 @@ build:
     - pgv-mummer = pygenomeviz.scripts.mummer:main
     - pgv-pmauve = pygenomeviz.scripts.pmauve:main
     - pgv-simpleplot = pygenomeviz.scripts.simpleplot:main
+    - pgv-gui = pygenomeviz.scripts.gui:main
   noarch: python
   script: {{ PYTHON }} -m pip install . -vv
   number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   host:
@@ -30,6 +33,8 @@ requirements:
     - matplotlib-base >=3.5.2
     - numpy >=1.21
     - python >=3.8
+  run_constrained:
+    - streamlit >=1.25.0
 
 test:
   imports:
@@ -41,6 +46,7 @@ test:
     - pgv-mummer --help
     - pgv-pmauve --help
     - pgv-simpleplot --help
+    - pgv-gui --help
   requires:
     - pip
     - pytest
diff --git a/recipes/pygtftk/meta.yaml b/recipes/pygtftk/meta.yaml
index cf5bd31cc00f3..16ae184f0638d 100644
--- a/recipes/pygtftk/meta.yaml
+++ b/recipes/pygtftk/meta.yaml
@@ -9,9 +9,11 @@ source:
   sha256: e31b1db156a2d20427c03b6ad868ef2e90a9a834a8842feb7fa284c9eb0690b7
 
 build:
-  number: 1
+  number: 2
   skip: True  # [py != 39]
   script: {{ PYTHON }} -m pip install . --no-deps -vv
+  run_exports:
+    - {{ pin_subpackage('pygtftk', max_pin='x.x') }}
 
 requirements:
   build:
@@ -21,7 +23,7 @@ requirements:
     - python
     - pip
     - numpy  >=1.15.3
-    - cython
+    - cython <1
     - setuptools
     - zlib
   run:
@@ -42,7 +44,7 @@ requirements:
     - matplotlib-base >=2.0.2
     - plotnine >=0.4.0
     - mpmath >=1.1.0
-    - scikit-learn >=0.21.2
+    - scikit-learn >=0.21.2,<1
     - python-graphviz
     - seaborn
     - future
@@ -63,3 +65,7 @@ about:
   home: http://github.com/dputhier/pygtftk
   license: MIT
   summary: 'The gtftk suite providing facilities to manipulate genomic annotations in gtf format.'
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/pyhmmer/meta.yaml b/recipes/pyhmmer/meta.yaml
index 6921da1936fde..ea675212bdbe2 100644
--- a/recipes/pyhmmer/meta.yaml
+++ b/recipes/pyhmmer/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pyhmmer" %}
-{% set version = "0.8.2" %}
+{% set version = "0.10.12" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 1f34ff301d77a2d49060aa3cb4c320119bc4b79a27c39563aa902f3c77d6d23a
+  sha256: 8457547adaa5f570f9a360a015a968b52709634540f95c17f687916640a075d1
 
 build:
   number: 0
-  skip: True  #[py2k or win]
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vvv "
+  skip: True  # [py2k or win]
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir --use-pep517 -vvv"
+  run_exports:
+    - {{ pin_subpackage('pyhmmer', max_pin="x.x") }}
 
 requirements:
   build:
@@ -21,25 +23,32 @@ requirements:
     - python
     - pip
     - cython
-    - setuptools >=46.4
     - psutil >=5.8
   run:
     - python
     - psutil >=5.8
 
 test:
+  requires:
+    - importlib_resources #[py36 or py37 or py38]
   imports:
     - {{ name }}
+  commands:
+    - python -m unittest -vv {{ name }}.tests
 
 about:
   home: https://github.com/althonos/pyhmmer
   license: MIT
+  license_family: MIT
   license_file: COPYING
   summary: Cython bindings and Python interface to HMMER3.
   doc_url: https://pyhmmer.readthedocs.io
+  dev_url: https://github.com/althonos/pyhmmer
 
 extra:
   recipe-maintainers:
     - althonos
   identifiers:
     - DOI:10.1093/bioinformatics/btad214
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/pyjaspar/meta.yaml b/recipes/pyjaspar/meta.yaml
index ef058f3bf8232..33d57d87ed2d2 100644
--- a/recipes/pyjaspar/meta.yaml
+++ b/recipes/pyjaspar/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "2.1.1" %}
+{% set version = "3.0.0" %}
 
 package:
   name: pyjaspar
@@ -6,18 +6,19 @@ package:
 
 source:
   url: https://pypi.io/packages/source/p/pyjaspar/pyjaspar-{{ version }}.tar.gz
-  sha256: "bc83794c2b334d1926bd0d940fdb31b0d2bbe6257cdaf9c19a4f7b0b22033d6b"
+  sha256: "b939770e5d9e0fb26137e404a640e8aeb866c84b570e59c42d056f61f561146d"
 
 build:
   number: 0
   noarch: python
-  script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
+  script: {{ PYTHON }} -m pip install . --no-build-isolation --no-deps -vvv
+  run_exports:
+    - {{ pin_subpackage('pyjaspar', max_pin="x") }}
 
 requirements:
   host:
     - python >=3.6
     - pip
-    - biopython
   run:
     - python >=3.6
     - biopython
@@ -28,8 +29,8 @@ test:
 
 about:
   home: https://github.com/asntech/pyjaspar
-  license: GPLv3
-  license_family: GPL
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
   summary: "pyJASPAR: a serverless interface to Biopython to access different versions of JASPAR database"
   description: "A serverless interface to Biopython to query and access JASPAR motifs from different releases of JASPAR database using sqlite3."
diff --git a/recipes/pymlst/meta.yaml b/recipes/pymlst/meta.yaml
index 986f1018ac122..8f481b91a588a 100644
--- a/recipes/pymlst/meta.yaml
+++ b/recipes/pymlst/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pymlst" %}
-{% set version = "2.1.4" %}
+{% set version = "2.1.6" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://github.com/bvalot/pyMLST/archive/refs/tags/{{ version }}.tar.gz"
-  sha256: 4d165390f2c1b9eb3f0053a57f81d68f78c9fe756797daf0ac321c2a68e4c36b
+  sha256: 4387893638d2bcee02d91ca82fee3875f81247a4db6b8bdf86b98f445b8a4d61
 
 build:
   noarch: python
@@ -17,6 +17,8 @@ build:
     - wgmlst=pymlst.cmd:wg
     - clamlst=pymlst.cmd:cla
   script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/pymochi/meta.yaml b/recipes/pymochi/meta.yaml
new file mode 100644
index 0000000000000..7ce09a732e24f
--- /dev/null
+++ b/recipes/pymochi/meta.yaml
@@ -0,0 +1,43 @@
+{% set version = "1.0" %}
+{% set github = "https://github.com/lehner-lab/MoCHI" %}
+
+package:
+  name: pymochi
+  version: '{{ version }}'
+
+source:
+  url: {{ github }}/archive/v{{ version }}.tar.gz
+  sha256: 93bd3c32b5a686d5bacecf3d48678497eeed3bf799198ab453e21accefecbae7
+
+build:
+  noarch: python
+  number: 0
+  script: {{ PYTHON }} -m pip install ./ --ignore-installed --no-deps -vv
+  run_exports:
+    - {{ pin_subpackage('pymochi', max_pin="x") }}
+
+requirements:
+  host:
+    - python =3.9
+    - pip
+  run:
+    - python =3.9
+    - pandas >=1.4.2
+    - matplotlib-base >=3.5.1
+    - numpy >=1.21.2
+    - pyreadr >=0.4.4
+    - pytorch >=1.10.1
+    - scikit-learn >=1.0.2
+    - scipy >=1.8.0
+    - seaborn >=0.11.2
+
+test:
+  commands:
+    - run_mochi.py -h
+
+about:
+  home: {{ github }}
+  dev_url: {{ github }} 
+  license: MIT 
+  summary: Neural networks to quantify energies, energetic couplings, epistasis and allostery from deep mutational scanning data
+
diff --git a/recipes/pymsaviz/meta.yaml b/recipes/pymsaviz/meta.yaml
index 4d66c0c27dd97..822721aa7ffd6 100644
--- a/recipes/pymsaviz/meta.yaml
+++ b/recipes/pymsaviz/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pymsaviz" %}
-{% set version = "0.4.0" %}
+{% set version = "0.4.2" %}
 
 package:
   name: {{ name|lower }}
@@ -7,34 +7,33 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/pymsaviz-{{ version }}.tar.gz
-  sha256: f10f4ec94fc93cac6d9ebfffbf343804e80d737a7890e5f72b9278d0afe9fc71
+  sha256: a6506c75b52e8e0c9f28c13f0cca2d2c5cd642c8136dbb42426ab5f19e5ff6f7
 
 build:
   entry_points:
     - pymsaviz = pymsaviz.scripts.cli:main
   noarch: python
-  script: {{ PYTHON }} -m pip install . -vv
+  script: {{ PYTHON }} -m pip install . --no-deps -vvv
   number: 0
+  run_exports:
+    - {{ pin_subpackage('pymsaviz', max_pin="x") }}
 
 requirements:
   host:
-    - python >=3.8,<4.0
-    - poetry
+    - python >=3.8
+    - poetry-core >=1.0.0
     - pip
   run:
-    - python >=3.8,<4.0
-    - biopython >=1.79,<2.0
-    - matplotlib-base >=3.5.2,<4.0.0
+    - python >=3.8
+    - biopython >=1.79
+    - matplotlib-base >=3.5.2
+    - pytest
 
 test:
   imports:
     - pymsaviz
   commands:
-    - pip check
     - pymsaviz --help
-  requires:
-    - pip
-    - pytest
   source_files:
     - tests/
 
@@ -42,7 +41,10 @@ about:
   home: https://moshi4.github.io/pyMSAviz/
   summary: MSA visualization python package for sequence analysis
   license: MIT
+  license_family: MIT
   license_file: LICENSE
+  dev_url: https://github.com/moshi4/pyMSAviz/
+  doc_url: https://moshi4.github.io/pyMSAviz/
 
 extra:
   recipe-maintainers:
diff --git a/recipes/pymzml/meta.yaml b/recipes/pymzml/meta.yaml
index 576080cdfbb09..63e3f837a8fa5 100644
--- a/recipes/pymzml/meta.yaml
+++ b/recipes/pymzml/meta.yaml
@@ -1,15 +1,17 @@
 package:
   name: pymzml
-  version: "2.5.2"
+  version: "2.5.10"
 
 source:
-  url: https://github.com/pymzml/pymzML/archive/refs/tags/v2.5.2.tar.gz
-  sha256: 606875d3852f189c60a540df077d7838ed563a704fa3838705975863e2f72c9f
+  url: https://github.com/pymzml/pymzML/archive/refs/tags/v2.5.10.tar.gz
+  sha256: 539b1a08645514e7020646c8887f1c42bef0c9105f30a58c56bd91830bd4c728
 
 build:
   number: 0
   noarch: python
   script: {{ PYTHON }} -m pip install --no-deps --ignore-installed . -vv
+  run_exports:
+    - {{ pin_subpackage('pymzml', max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/pyopal/meta.yaml b/recipes/pyopal/meta.yaml
index c8d1ecaf26244..c93eec8a30626 100644
--- a/recipes/pyopal/meta.yaml
+++ b/recipes/pyopal/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pyopal" %}
-{% set version = "0.4.0" %}
+{% set version = "0.6.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,11 +7,13 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 16f6a41dc245a4d356c54586d5ede874fe19dc66f52d01b5062383da7da44f20
+  sha256: 434875e92be7bee2c27b7034f502f263ef777b364349a5fd50ec07d7401d1915
 
 build:
   number: 0
   skip: True  #[py2k]
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vvv "
 
 requirements:
@@ -23,10 +25,12 @@ requirements:
     - pip
     - cython
     - setuptools
+    - scoring-matrices >=0.2
   run:
     - python
     - setuptools
     - archspec
+    - scoring-matrices >=0.2
 
 test:
   imports:
@@ -44,3 +48,5 @@ about:
 extra:
   recipe-maintainers:
     - althonos
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/pyopenms/build.sh b/recipes/pyopenms/build.sh
index eb9c7eabe6927..870b51159778a 100644
--- a/recipes/pyopenms/build.sh
+++ b/recipes/pyopenms/build.sh
@@ -37,6 +37,7 @@ cmake ../src/pyOpenMS \
   -DCMAKE_BUILD_WITH_INSTALL_NAME_DIR=ON \
   -DPython_EXECUTABLE=$PYTHON \
   -DPython_FIND_STRATEGY="LOCATION" \
+  -DPY_NUM_MODULES=20 \
   -DNO_DEPENDENCIES=ON \
   -DNO_SHARE=ON
 
diff --git a/recipes/pyopenms/meta.yaml b/recipes/pyopenms/meta.yaml
index e05cc5c183bab..a3376b5a32f13 100644
--- a/recipes/pyopenms/meta.yaml
+++ b/recipes/pyopenms/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pyopenms" %}
-{% set version = "3.0.0" %}
+{% set version = "3.1.0" %} # if ends with 'dev' it is considered a development release and pulled from GitHub
 package:
   name: {{ name|lower  }}
   version: {{ version  }}
@@ -11,13 +11,15 @@ source:
   git_depth: 1 # (Defaults to -1/not shallow)
 {% else %}
 source:
-  url: https://abibuilder.cs.uni-tuebingen.de/archive/openms/OpenMSInstaller/release/{{ version }}/OpenMS-{{ version }}-src.tar.gz
-  md5: 2b7ee0f4d8f42eb3c17384347df2dba4
+  url: https://github.com/OpenMS/OpenMS/releases/download/Release{{ version }}/OpenMS-{{ version }}-src.tar.gz
+  md5: 6a60ef1a95c7ce915cc3a02e5bccd593
 {% endif %}
 
 build:
-  skip: True  # [py2k]
+  skip: True  # [py2k or osx]
   number: 0
+  run_exports:
+    - {{ pin_subpackage("pyopenms", max_pin="x.x") }}  
 
 requirements:
   build:
diff --git a/recipes/pypgatk/meta.yaml b/recipes/pypgatk/meta.yaml
index 870dcf9978182..d116777b91bb4 100644
--- a/recipes/pypgatk/meta.yaml
+++ b/recipes/pypgatk/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pypgatk" %}
-{% set version = "0.0.23" %}
+{% set version = "0.0.24" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,11 +7,13 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: "b99906a05cacb9c4bd5c58ba65b9ef71c4582bc788fd7684002d12832f280c2d"
+  sha256: "4505e80adf38fb27b80fa0c8ccdc956dcd72a58c839d7d93c42c1b73c9ca8b45"
 
 build:
   number: 0
   noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
 
 requirements:
@@ -35,6 +37,9 @@ requirements:
     - pandas
     # should be removed as soon as we patch the other packages
     - pysam >=0.16
+    - pyahocorasick
+    - tqdm
+    - pathos
 
 test:
   imports:
diff --git a/recipes/pypgx/meta.yaml b/recipes/pypgx/meta.yaml
index c19202a95b1a6..97ff4a6509b4a 100644
--- a/recipes/pypgx/meta.yaml
+++ b/recipes/pypgx/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pypgx" %}
-{% set version = "0.20.0" %}
+{% set version = "0.24.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: acd27985a7013077a912dc53f10253cb474422c321e694a7ee487d72f666caf3
+  sha256: ba93afe9ec0d0dab31e25e7f21db5363c3cf46609403efdd0cc83c656d2744d8
 
 build:
   number: 0
@@ -15,6 +15,8 @@ build:
     - pypgx=pypgx.__main__:main
   script: "{{ PYTHON }} -m pip install . --no-deps -vv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/pypints/meta.yaml b/recipes/pypints/meta.yaml
index a33a7e0a23d7c..b32637aeeaf6e 100644
--- a/recipes/pypints/meta.yaml
+++ b/recipes/pypints/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pyPINTS" %}
-{% set version = "1.1.9" %}
+{% set version = "1.1.10" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: b153a9122fe0542dddfdb18b2822e2ab83de34f9a187bcd0d2917234538a0638
+  sha256: 91e4e6e8a308ad4e4e829068b96282385a0285512a2351cedd9793c50e8a7f63
 
 build:
   number: 0
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('pypints', max_pin="x") }}
 
 requirements:
   host:
@@ -41,7 +43,7 @@ test:
 about:
   home: "https://pints.yulab.org"
   license: GPL-3.0-only
-  license_family: GPL
+  license_family: GPL3
   license_file: LICENSE
   summary: "Peak Identifier for Nascent Transcripts Starts (PINTS)"
   dev_url: "https://github.com/hyulab/PINTS"
diff --git a/recipes/pypolca/meta.yaml b/recipes/pypolca/meta.yaml
new file mode 100644
index 0000000000000..05b761f65d25c
--- /dev/null
+++ b/recipes/pypolca/meta.yaml
@@ -0,0 +1,52 @@
+{% set name = "pypolca" %}
+{% set version = "0.3.1" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: bb48e81a8a3a11979a3edc8091dbfac4b14ec3a57f0952075ae44c8638bac620
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - pypolca = pypolca:main
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('pypolca', max_pin='x') }}
+
+requirements:
+  host:
+    - python >=3.8,<4.0
+    - poetry-core >=1.0.0
+    - pip
+  run:
+    - samtools >=1.18
+    - python >=3.8,<4.0
+    - click >=8.0.0
+    - freebayes >=1.3.1,<1.3.7
+    - biopython >=1.76
+    - loguru >=0.5.3
+    - pandas >=1.4.2
+    - pyyaml >=6.0
+    - bwa >=0.7.17
+
+test:
+  imports:
+    - pypolca
+  commands:
+    - pypolca --help
+
+about:
+  home: https://github.com/gbouras13/pypolca
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: Standalone Python re-implementation of the POLCA polisher from MaSuRCA
+
+extra:
+  recipe-maintainers:
+    - gbouras13
diff --git a/recipes/pyrle/meta.yaml b/recipes/pyrle/meta.yaml
index ac19aa6fb49b8..dbc4ce7dec49c 100644
--- a/recipes/pyrle/meta.yaml
+++ b/recipes/pyrle/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pyrle" %}
-{% set version = "0.0.38" %}
+{% set version = "0.0.40" %}
 
 package:
   name: '{{ name|lower }}'
@@ -7,12 +7,14 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 8b382947a18c73eb4aeaa9e731cb89d0b755f85f75ccb49fc7e121ae3fb984be
+  sha256: 32ccdbbe594377c7b6a2e04b11fedd7886b330468f6fa378a5e06e070763f4ba
 
 build:
-  number: 3
+  number: 0
   skip: True  # [py2k]
   script: python setup.py install --single-version-externally-managed --record=record.txt
+  run_exports:
+    - {{ pin_subpackage('pyrle', max_pin="x.x") }}
 
 requirements:
   build:
@@ -36,9 +38,12 @@ test:
 about:
   home: https://github.com/endrebak/pyrle
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary: Genomic Rle-objects for Python
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   skip-lints:
     - uses_setuptools
diff --git a/recipes/pyrodigal-gv/meta.yaml b/recipes/pyrodigal-gv/meta.yaml
new file mode 100644
index 0000000000000..34996ec3ebe2b
--- /dev/null
+++ b/recipes/pyrodigal-gv/meta.yaml
@@ -0,0 +1,43 @@
+{% set name = "pyrodigal-gv" %}
+{% set version = "0.3.1" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/pyrodigal_gv-{{ version }}.tar.gz
+  sha256: 287f0507fad25f8c148a1d93a030e1a64b0434beba62f45354526b0eeef4ca97
+
+build:
+  script: {{ PYTHON }} -m pip install . --ignore-installed  --use-pep517 --no-deps -vvv
+  noarch: python
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+
+requirements:
+  host:
+    - python
+    - setuptools >=46.4
+    - wheel >=0.23
+    - packaging >=19.1
+    - pycparser
+    - pip
+  run:
+    - python
+    - pyrodigal >=3.1,<4
+    - importlib-resources # [py<39]
+
+test:
+  imports:
+    - pyrodigal_gv
+  commands:
+    - python -m unittest -vv pyrodigal_gv.tests
+
+about:
+  home: https://github.com/althonos/pyrodigal-gv
+  summary: A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: COPYING
diff --git a/recipes/pyrodigal/build_failure.osx-64.yaml b/recipes/pyrodigal/build_failure.osx-64.yaml
deleted file mode 100644
index 4f9f326f71367..0000000000000
--- a/recipes/pyrodigal/build_failure.osx-64.yaml
+++ /dev/null
@@ -1,104 +0,0 @@
-recipe_sha: a0eea3e712441dfcfc57db816b9d49d5e2eb5ea661ee696199d496549d6919c2  # The commit at which this recipe failed to build.
-skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
-log: |-
-  {} is not a Mach-O file
-  Can't parse the binary at the index #1
-  {} is not a Mach-O file
-  Can't parse the binary at the index #0
-  {} is not a Mach-O file
-  Can't parse the binary at the index #1
-  {} is not a Mach-O file
-  Can't parse the binary at the index #0
-  {} is not a Mach-O file
-  Can't parse the binary at the index #1
-  {} is not a Mach-O file
-  Can't parse the binary at the index #0
-  {} is not a Mach-O file
-  Can't parse the binary at the index #1
-  {} is not a Mach-O file
-  Can't parse the binary at the index #0
-  {} is not a Mach-O file
-  Can't parse the binary at the index #1
-  {} is not a Mach-O file
-  Can't parse the binary at the index #0
-  {} is not a Mach-O file
-  Can't parse the binary at the index #1
-  {} is not a Mach-O file
-  Can't parse the binary at the index #2
-  {} is not a Mach-O file
-  Can't parse the binary at the index #3
-  {} is not a Mach-O file
-  Can't parse the binary at the index #4
-  {} is not a Mach-O file
-  Can't parse the binary at the index #0
-  {} is not a Mach-O file
-  Can't parse the binary at the index #1
-  {} is not a Mach-O file
-  Can't parse the binary at the index #2
-  {} is not a Mach-O file
-  Can't parse the binary at the index #3
-  {} is not a Mach-O file
-  Can't parse the binary at the index #4
-  {} is not a Mach-O file
-  Can't parse the binary at the index #0
-  {} is not a Mach-O file
-  Can't parse the binary at the index #1
-     INFO: sysroot: '/System/Library/Frameworks/' files: '['vmnet.framework/Versions/A/_CodeSignature/CodeResources', 'vmnet.framework/Versions/A/Resources/version.plist', 'vmnet.framework/Versions/A/Resources/en.lproj/InfoPlist.strings', 'vmnet.framework/Versions/A/Resources/Info.plist']'
-     INFO: sysroot: '/usr/lib/' files: '['zsh/5.8.1/zsh/zselect.so', 'zsh/5.8.1/zsh/zpty.so', 'zsh/5.8.1/zsh/zprof.so', 'zsh/5.8.1/zsh/zleparameter.so']'
-     INFO: sysroot: '/opt/X11/' files: '[]'
-     INFO (pyrodigal,lib/python3.10/site-packages/pyrodigal/_pyrodigal.cpython-310-darwin.so): Needed DSO /System/Library/Frameworks/libSystem.B.dylib found in $SYSROOT
-  WARNING (pyrodigal): interpreter (Python) package conda-forge::python-3.10.11-he7542f4_0_cpython in requirements/run but it is not used (i.e. it is overdepending or perhaps statically linked? If that is what you want then add it to build/ignore_run_exports)
-  WARNING (pyrodigal): interpreted library (Python) package conda-forge::setuptools-67.7.2-pyhd8ed1ab_0 in requirements/run but it is not used (i.e. it is overdepending or perhaps statically linked? If that is what you want then add it to build/ignore_run_exports)
-  Fixing permissions
-  Packaged license file/s.
-  INFO :: Time taken to mark (prefix)
-          0 replacements in 0 files was 0.10 seconds
-  Files containing CONDA_PREFIX
-  -----------------------------
-  bin/pyrodigal (text): Patching
-  TEST START: /opt/mambaforge/envs/bioconda/conda-bld/osx-64/pyrodigal-2.1.0-py310he07d9a1_3.tar.bz2
-  Renaming work directory '/opt/mambaforge/envs/bioconda/conda-bld/pyrodigal_1685394321921/work' to '/opt/mambaforge/envs/bioconda/conda-bld/pyrodigal_1685394321921/work_moved_pyrodigal-2.1.0-py310he07d9a1_3_osx-64'
-  shutil.move(work)=/opt/mambaforge/envs/bioconda/conda-bld/pyrodigal_1685394321921/work, dest=/opt/mambaforge/envs/bioconda/conda-bld/pyrodigal_1685394321921/work_moved_pyrodigal-2.1.0-py310he07d9a1_3_osx-64)
-  INFO:conda_build.utils:Renaming work directory '/opt/mambaforge/envs/bioconda/conda-bld/pyrodigal_1685394321921/work' to '/opt/mambaforge/envs/bioconda/conda-bld/pyrodigal_1685394321921/work_moved_pyrodigal-2.1.0-py310he07d9a1_3_osx-64'
-  INFO:conda_build.utils:shutil.move(work)=/opt/mambaforge/envs/bioconda/conda-bld/pyrodigal_1685394321921/work, dest=/opt/mambaforge/envs/bioconda/conda-bld/pyrodigal_1685394321921/work_moved_pyrodigal-2.1.0-py310he07d9a1_3_osx-64)
-  Reloading output folder: /opt/mambaforge/envs/bioconda/conda-bld
-
-  ## Package Plan ##
-
-    environment location: /opt/mambaforge/envs/bioconda/conda-bld/pyrodigal_1685394321921/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold
-
-
-  The following NEW packages will be INSTALLED:
-
-      bzip2:           1.0.8-h0d85af4_4           conda-forge
-      ca-certificates: 2023.5.7-h8857fd0_0        conda-forge
-      libffi:          3.4.2-h0d85af4_5           conda-forge
-      libsqlite:       3.42.0-h58db7d2_0          conda-forge
-      libzlib:         1.2.13-hfd90126_4          conda-forge
-      ncurses:         6.3-h96cf925_1             conda-forge
-      openssl:         3.1.0-h8a1eda9_3           conda-forge
-      pyrodigal:       2.1.0-py310he07d9a1_3      local
-      python:          3.10.11-he7542f4_0_cpython conda-forge
-      python_abi:      3.10-3_cp310               conda-forge
-      readline:        8.2-h9e318b2_1             conda-forge
-      setuptools:      67.7.2-pyhd8ed1ab_0        conda-forge
-      tk:              8.6.12-h5dbffcc_0          conda-forge
-      tzdata:          2023c-h71feb2d_0           conda-forge
-      xz:              5.2.6-h775f41a_0           conda-forge
-
-  Preparing transaction: ...working... done
-  Verifying transaction: ...working... done
-  Executing transaction: ...working... done
-  export PREFIX=/opt/mambaforge/envs/bioconda/conda-bld/pyrodigal_1685394321921/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold
-  export SRC_DIR=/opt/mambaforge/envs/bioconda/conda-bld/pyrodigal_1685394321921/test_tmp
-  import: 'pyrodigal'
-  Traceback (most recent call last):
-    File "/opt/mambaforge/envs/bioconda/conda-bld/pyrodigal_1685394321921/test_tmp/run_test.py", line 2, in <module>
-      import pyrodigal
-    File "/opt/mambaforge/envs/bioconda/conda-bld/pyrodigal_1685394321921/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/python3.10/site-packages/pyrodigal/__init__.py", line 8, in <module>
-      from . import _pyrodigal
-  ImportError: dlopen(/opt/mambaforge/envs/bioconda/conda-bld/pyrodigal_1685394321921/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/python3.10/site-packages/pyrodigal/_pyrodigal.cpython-310-darwin.so, 0x0002): symbol not found in flat namespace (_GetX86Info)
-  Tests failed for pyrodigal-2.1.0-py310he07d9a1_3.tar.bz2 - moving package to /opt/mambaforge/envs/bioconda/conda-bld/broken
-  WARNING:conda_build.build:Tests failed for pyrodigal-2.1.0-py310he07d9a1_3.tar.bz2 - moving package to /opt/mambaforge/envs/bioconda/conda-bld/broken
-  TESTS FAILED: pyrodigal-2.1.0-py310he07d9a1_3.tar.bz2
-# Last 100 lines of the build log.
diff --git a/recipes/pyrodigal/meta.yaml b/recipes/pyrodigal/meta.yaml
index 1b78d7456dc9a..9334800d4ffae 100644
--- a/recipes/pyrodigal/meta.yaml
+++ b/recipes/pyrodigal/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pyrodigal" %}
-{% set version = "2.3.0" %}
+{% set version = "3.4.1" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,42 +7,48 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 6aaaab9cfdd70052ab12fd55c2c29216b6f438f5ae50a7dd53ad70faf5f47e60
+  sha256: 65963ad8cf651f408758e7fa74cbf793eae9720310f0ef8781ee1a285d435326
 
 build:
   number: 0
-  skip: True  #[py2k]
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vvv "
+  skip: True  # [py < 36]
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir --use-pep517 -vvv"
+  entry_points:
+    - pyrodigal = pyrodigal.cli:main
+  run_exports:
+    - {{ pin_subpackage("pyrodigal", max_pin="x") }}
 
 requirements:
   build:
     - {{ compiler('c') }}
   host:
-    - python >=3
+    - python
     - pip
     - cython
-    - setuptools
   run:
-    - python >=3
-    - setuptools
+    - python
     - archspec >=0.2.0
 
 test:
   imports:
     - {{ name }}
   commands:
+    - pyrodigal --help
     - python -m unittest -vv {{ name }}.tests
 
 about:
   home: https://github.com/althonos/pyrodigal
-  license: GPL-3
-  license_family: GPL
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: COPYING
   summary: Python bindings to Prodigal, an ORF finder for microbial sequences.
   doc_url: https://pyrodigal.readthedocs.org/
+  dev_url: https://github.com/althonos/pyrodigal
 
 extra:
   recipe-maintainers:
     - althonos
   identifiers:
     - doi:10.21105/joss.04296  # JOSS paper
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/pysais/meta.yaml b/recipes/pysais/meta.yaml
new file mode 100644
index 0000000000000..b6fe70a385acb
--- /dev/null
+++ b/recipes/pysais/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "pysais" %}
+{% set version = "1.1.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/PySAIS-{{ version }}.tar.gz
+  sha256: 6547748a32ab876c1a50553b63d486d585f12a40352387a932eab8b908a13f20
+
+build:
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+  host:
+    - python
+    - setuptools
+    - wheel
+    - numpy
+    - cython >=3.0.0
+    - pip
+  run:
+    - python
+    - pytables
+    - {{ pin_compatible('numpy') }}
+
+test:
+  imports:
+    - PySAIS
+  commands:
+    - python3 -c "import PySAIS, numpy; arr=numpy.fromiter('ADARINA','S1'); assert(arr[PySAIS.sais(arr.tobytes())].tobytes() == b'AAADINR')"
+
+about:
+  home: https://bitbucket.org/alex-warwickvesztrocy/pysais
+  summary: Suffix array computation with induced sorting algorithm.
+  license: MIT
+  license_file: PySAIS/COPYING
+
+extra:
+  recipe-maintainers:
+    - alpae
diff --git a/recipes/pysam/arm_hwcap.patch b/recipes/pysam/arm_hwcap.patch
new file mode 100644
index 0000000000000..d7f908ab3d6b4
--- /dev/null
+++ b/recipes/pysam/arm_hwcap.patch
@@ -0,0 +1,15 @@
+Conda-forge's build environment on ARM uses sysroot_linux-aarch64 2.17, which
+is based on glibc 2.17 so <sys/auxv.h> does not define HWCAP_* values on ARM.
+Work around this by including the kernel header to get the desired values.
+
+--- a/htslib/htscodecs/htscodecs/rANS_static4x16pr.c	2023-10-10 02:54:16
++++ b/htslib/htscodecs/htscodecs/rANS_static4x16pr.c	2024-03-06 00:01:14
+@@ -1011,6 +1011,8 @@
+ 
+ #if defined(__linux__) || defined(__FreeBSD__)
+ #include <sys/auxv.h>
++// Ensure ARM HWCAP_* values are defined even on old glibc
++#include <asm/hwcap.h>
+ #elif defined(_WIN32)
+ #include <processthreadsapi.h>
+ #endif
diff --git a/recipes/pysam/meta.yaml b/recipes/pysam/meta.yaml
index 2ddf3c240ec6e..ac9c338d92f61 100644
--- a/recipes/pysam/meta.yaml
+++ b/recipes/pysam/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.21.0" %}
+{% set version = "0.22.1" %}
 
 package:
   name: pysam
@@ -6,12 +6,16 @@ package:
 
 source:
   url: https://github.com/pysam-developers/pysam/archive/v{{ version }}.tar.gz
-  sha256: 8b0c0d1d621892a0acea3d3dbf27564353b088d5bf6ee68852b1b8f3a408ccdf
+  sha256: e4981524d7627c53fa0d3f8cbec2bd65c2ea7520092f25e1029af12cb7b82ff6
+  patches:
+    - arm_hwcap.patch
 
 build:
-  number: 1
+  number: 0
   skip: True # [py2k]
   binary_relocation: False # [linux]
+  run_exports:
+    - {{ pin_subpackage('pysam', max_pin="x.x") }}
 
 requirements:
   build:
@@ -29,12 +33,6 @@ requirements:
     - openssl  # [not osx]
   run:
     - python
-    - zlib
-    - xz
-    - bzip2
-    - libdeflate
-    - libcurl
-    - openssl  # [not osx]
 
 about:
   home: https://github.com/pysam-developers/pysam
@@ -42,6 +40,8 @@ about:
   summary: "Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix."
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:pysam
     - doi:10.1093/bioinformatics/btp352
diff --git a/recipes/pysamstats/meta.yaml b/recipes/pysamstats/meta.yaml
index f6f765ba811b1..e0e59504cd7e9 100644
--- a/recipes/pysamstats/meta.yaml
+++ b/recipes/pysamstats/meta.yaml
@@ -7,7 +7,9 @@ source:
   md5: 050294fe9fe99aae3b07ea28f6cbe449
 
 build:
-  number: 10
+  number: 11
+  run_exports:
+    - {{ pin_subpackage('pysamstats', max_pin="x") }}
 
 requirements:
   build:
@@ -41,5 +43,7 @@ about:
     on sequence alignments from a SAM, BAM or CRAM file.
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:pysamstats
diff --git a/recipes/pyslow5/meta.yaml b/recipes/pyslow5/meta.yaml
index e516ea20f2dc2..2d384bb8d3dbc 100644
--- a/recipes/pyslow5/meta.yaml
+++ b/recipes/pyslow5/meta.yaml
@@ -1,15 +1,15 @@
-{% set version = "1.0.0" %}
+{% set version = "1.1.0" %}
 
 package:
   name: pyslow5
   version: {{ version }}
 
 source:
-  url: https://files.pythonhosted.org/packages/78/f1/0f9a1ed7f046356b78aee6ff4f254898012b0c0a61e06eec7c5248099a0c/pyslow5-1.0.0.tar.gz
-  sha256: 1969f1a657f1051b18942cd91804f06d3324b4cbcf2d423a8f947deb74f1d0cc
+  url: https://files.pythonhosted.org/packages/96/80/ef430871b57cb97e2ab2449140fd00deec6cd9e8c71249676d561a45862a/pyslow5-1.1.0.tar.gz
+  sha256: 2926e13dbf8b1360e7628c32ebf1ad71133ed5bece548f3837b08cd5b7d79811
 
 build:
-  number: 3
+  number: 0
 
 requirements:
   build:
diff --git a/recipes/pyspoa/build.sh b/recipes/pyspoa/build.sh
deleted file mode 100644
index c70084521ee9f..0000000000000
--- a/recipes/pyspoa/build.sh
+++ /dev/null
@@ -1,9 +0,0 @@
-#!/bin/bash
-
-export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
-
-make CXX="${CXX}" \
-	CXXFLAGS="${CXXFLAGS} -O3" \
-	INCLUDES="-I${PREFIX}/include" \
-	LIBPATH="-L${PREFIX}/lib" -j4 build
-${PYTHON} -m pip install . --use-pep517 --no-deps --ignore-install -vv
diff --git a/recipes/pyspoa/meta.yaml b/recipes/pyspoa/meta.yaml
index df7591ff543ee..4e1d12c9e6cac 100644
--- a/recipes/pyspoa/meta.yaml
+++ b/recipes/pyspoa/meta.yaml
@@ -1,21 +1,21 @@
 {% set name = "pyspoa" %}
-{% set version = "0.0.9" %}
-{% set sha256 = "30b883b8dfc2355a6062f9f848e825f7ffac169657190d797cf17b4314d588fe" %}
+{% set version = "0.2.1" %}
+{% set sha256 = "a8a7b7df3faa1b5bb16d6b4e82099b1c9aca604c8288bcf8ca4960d376f7ff8c" %}
 
 package:
   name: {{ name }}
   version: {{ version }}
 
 source:
-- url: https://github.com/nanoporetech/pyspoa/archive/refs/tags/v{{ version }}.tar.gz
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/pyspoa-{{ version }}.tar.gz
   sha256: {{ sha256 }}
-- url: https://github.com/rvaser/spoa/archive/refs/tags/4.0.8.tar.gz
-  sha256: 3fc7e837b1052bd470924e37e0ed9531e7c839cd14b400573171d3d46d3ed9cd
-  folder: src
 
 build:
-  number: 0
+  number: 1
   skip: True  # [py < 38]
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  run_exports:
+    - {{ pin_subpackage('pyspoa', max_pin="x.x") }}
 
 requirements:
   build:
@@ -25,10 +25,9 @@ requirements:
   host:
     - python
     - pip
-    - setuptools
-    - wheel
     - pybind11
     - scikit-build
+    - zlib
   run:
     - python
 
@@ -39,7 +38,8 @@ test:
 about:
   home: https://github.com/nanoporetech/pyspoa
   license: MIT
-  license_file: LICENSE
+  license_family: MIT
+  license_file: src/LICENSE
   summary: Python binding to spoa library.
   doc_url: https://github.com/nanoporetech/spoa
   dev_url: https://github.com/nanoporetech/spoa
@@ -48,3 +48,5 @@ extra:
   recipe-maintainers:
     - cjw85
     - iiSeymour
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/pysradb/meta.yaml b/recipes/pysradb/meta.yaml
index b181372320c58..2fb096f1026c1 100644
--- a/recipes/pysradb/meta.yaml
+++ b/recipes/pysradb/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pysradb" %}
-{% set version = "2.1.0" %}
+{% set version = "2.2.0" %}
 
 package:
   name: '{{ name|lower }}'
@@ -7,7 +7,7 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: c8766577cd4b12d3d42d75460b7217af2dc46903245af412c658f4620ffb0924
+  sha256: be7c451b590045683cb8b10786fedcd622f5da76e74284e70a4b2ee65faf43e9
 
 build:
   number: 0
@@ -15,6 +15,8 @@ build:
   entry_points:
     - pysradb=pysradb.cli:parse_args
   script: {{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv
+  run_exports:
+    - {{ pin_subpackage('pysradb', max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/pytabix/meta.yaml b/recipes/pytabix/meta.yaml
index b1261eec08bf5..32f31a6178bde 100644
--- a/recipes/pytabix/meta.yaml
+++ b/recipes/pytabix/meta.yaml
@@ -6,8 +6,10 @@ package:
   version: {{ version }}
 
 build:
-  number: 4
+  number: 5
   script: '{{ PYTHON }} -m pip install . --no-deps -vv'
+  run_exports:
+    - {{ pin_subpackage('pytabix', max_pin='x.x') }}
 
 source:
   url: https://pypi.io/packages/source/p/pytabix/pytabix-{{ version }}.tar.gz
@@ -35,3 +37,7 @@ about:
   license: MIT
   license_file: LICENSE
   summary: Fast random access to sorted files compressed with bgzip and indexed by tabix.
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/pytaxonkit/meta.yaml b/recipes/pytaxonkit/meta.yaml
index 2f82b3f837c92..8da2b003b8ae3 100644
--- a/recipes/pytaxonkit/meta.yaml
+++ b/recipes/pytaxonkit/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.8" %}
-{% set sha256 = "414793a8ddc40c03c8c63512114c613153b31ff4c7da1feb015c2f3191f4d8d0" %}
+{% set version = "0.9" %}
+{% set sha256 = "539ae750fef3d213b669645359dbd4758e28950981a72a35755a852cd8f50358" %}
 
 package:
   name: pytaxonkit
@@ -10,19 +10,21 @@ source:
   sha256: '{{sha256}}'
 
 build:
+  run_exports:
+    - {{ pin_subpackage("pytaxonkit", max_pin="x.x") }}
   noarch: python
-  script: python -m pip install --no-deps --ignore-installed .
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation . -vvv
   number: 0
 
 requirements:
   host:
-    - python >=3
+    - python >=3,<3.12
     - pip
   run:
-    - python >=3
+    - python >=3,<3.12
     - pandas >=1.0
     - pytest >=5.4
-    - taxonkit >=0.8
+    - taxonkit >=0.16
 
 test:
   imports:
@@ -33,11 +35,13 @@ test:
 
 about:
   home: https://github.com/bioforensics/pytaxonkit/
-  license: BSD License
+  license: BSD-3-Clause
   license_family: BSD
+  license_file: LICENSE
   summary: Python bindings for the TaxonKit library.
   dev_url: https://github.com/bioforensics/pytaxonkit/
 
 extra:
   recipe-maintainers:
     - standage
+    - RyanBerger98
diff --git a/recipes/pyteomics/meta.yaml b/recipes/pyteomics/meta.yaml
index a020a6724a27f..cdc52d031adeb 100644
--- a/recipes/pyteomics/meta.yaml
+++ b/recipes/pyteomics/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "4.6" %}
+{% set version = "4.7.2" %}
 
 package:
   name: pyteomics
@@ -6,11 +6,13 @@ package:
 
 source:
   url: https://pypi.io/packages/source/p/pyteomics/pyteomics-{{ version }}.tar.gz
-  sha256: a5c2ee4a36b13c388b67b7d426646dd0a5cb46d21263e4ce31503021f3b4d5d7
+  sha256: 9c2cc22f0e45574c62a8e8628a8412d7b5688ccdd679b2f6ddc6fbbee2abb26d
 
 build:
   noarch: python
   number: 0
+  run_exports:
+    - {{ pin_subpackage("pyteomics", max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/pythomics/meta.yaml b/recipes/pythomics/meta.yaml
index e46b7ee9975b8..2480fd7a0c419 100644
--- a/recipes/pythomics/meta.yaml
+++ b/recipes/pythomics/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pythomics" %}
-{% set version = "0.3.46" %}
+{% set version = "0.4.1" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,10 +7,10 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 73dee720352448f7f5bddf36ac54b29a99284ea934b230ab08e8044b61dd1204
+  sha256: 25084cfb2eb7740cb4bea9c238ba0bc6d9310d8f603b42ac703ed332575ff72d
 
 build:
-  number: 2
+  number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
 
diff --git a/recipes/python-bioext/meta.yaml b/recipes/python-bioext/meta.yaml
index e68dae221db64..84edecf3c34ce 100644
--- a/recipes/python-bioext/meta.yaml
+++ b/recipes/python-bioext/meta.yaml
@@ -1,21 +1,23 @@
 {% set name = "BioExt" %}
-{% set version = "0.20.4" %}
-{% set sha256 = "39469dff2934eaf9d39206483d03b703d22e6e740ee52fa5d16982c5f0e0bc7d" %}
+{% set version = "0.21.2" %}
+{% set sha256 = "bd3ae29e1dfc4e543b6b6acdd26d073157365233c690a31793d2924055999568" %}
 
 package:
   name: python-{{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://github.com/veg/{{ name }}/archive/{{ version }}.tar.gz
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/bioext-{{ version }}.tar.gz
   sha256: {{ sha256 }}
   patches:
     - cythonize.patch
     - osx-freetype.patch # [osx]
 
 build:
-  number: 4
+  number: 0
   skip: True # [py2k]
+  run_exports:
+    - {{ pin_subpackage("python-bioext", max_pin="x.x") }}
 
 requirements:
   build:
@@ -27,14 +29,14 @@ requirements:
     - cython >=0.28
     - setuptools
     - biopython >=1.58
-    - numpy >=1.14
+    - numpy >1.20.3
     - scipy
     - pysam
   run:
     - freetype
     - python
     - biopython >=1.58
-    - numpy >=1.14
+    - numpy >1.20.3
     - scipy
     - pysam
     - joblib
diff --git a/recipes/python-crypt4gh/build.sh b/recipes/python-crypt4gh/build.sh
deleted file mode 100644
index 112ff62f41095..0000000000000
--- a/recipes/python-crypt4gh/build.sh
+++ /dev/null
@@ -1,3 +0,0 @@
-#!/usr/bin/env bash
-
-pip install . --no-deps --ignore-installed --no-cache-dir
\ No newline at end of file
diff --git a/recipes/python-crypt4gh/meta.yaml b/recipes/python-crypt4gh/meta.yaml
index 663c219b00c12..df088ad3afcf4 100644
--- a/recipes/python-crypt4gh/meta.yaml
+++ b/recipes/python-crypt4gh/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "crypt4gh" %}
-{% set version = "1.6" %}
-{% set sha256_any = "8754f23182ee7dd5119ab0eb4999b3c8ffaa8bb8f8dbf2cdbaff790ac5b4f3a7" %}
+{% set version = "1.7" %}
+{% set sha256_any = "88785a298a9c47d900f179f69d9768052df58bd6904b5c7cbdc62cb21d475ef1" %}
 
 package:
   name: python-{{ name }}
@@ -13,13 +13,19 @@ source:
 build:
   number: 0
   noarch: python
+  entry_points:
+    - crypt4gh=crypt4gh.__main__:main
+    - crypt4gh-keygen=crypt4gh.keys.__init__:main
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation --no-cache-dir
+  run_exports:
+    - {{ pin_subpackage('python-crypt4gh', max_pin="x") }}
 
 requirements:
   host:
-    - python >=3
+    - python >=3.6
     - pip
   run:
-    - python >=3
+    - python >=3.6
     - pyyaml
     - docopt
     - cryptography
@@ -44,8 +50,10 @@ test:
     - diff testfile-help.txt message.bob.received
 
 about:
-  home: https://github.com/EGA-archive/crypt4gh
-  license: Apache-2.0
+  home: "https://github.com/EGA-archive/crypt4gh"
+  license: "Apache-2.0"
   license_family: APACHE
   license_file: LICENSE
-  summary: GA4GH cryptographic tools
+  summary: "GA4GH cryptographic tools"
+  dev_url: "https://github.com/EGA-archive/crypt4gh"
+  doc_url: "http://crypt4gh.readthedocs.io"
diff --git a/recipes/python-edlib/LICENSE b/recipes/python-edlib/LICENSE
new file mode 100644
index 0000000000000..d8f3fefba092a
--- /dev/null
+++ b/recipes/python-edlib/LICENSE
@@ -0,0 +1,20 @@
+The MIT License (MIT)
+
+Copyright (c) 2014 Martin Šošić
+
+Permission is hereby granted, free of charge, to any person obtaining a copy of
+this software and associated documentation files (the "Software"), to deal in
+the Software without restriction, including without limitation the rights to
+use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of
+the Software, and to permit persons to whom the Software is furnished to do so,
+subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS
+FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR
+COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER
+IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
+CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
diff --git a/recipes/python-edlib/meta.yaml b/recipes/python-edlib/meta.yaml
index 620f2a4a05d0f..54fe7588ea123 100644
--- a/recipes/python-edlib/meta.yaml
+++ b/recipes/python-edlib/meta.yaml
@@ -9,14 +9,18 @@ source:
   sha256: 64c3dfab3ebe3e759565a0cc71eb4df23cf3ce1713fd558af3c473dddc2a3766
 
 build:
-  number: 4
+  number: 6
+  script: "EDLIB_USE_CYTHON=1 {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage("python-edlib", max_pin="x") }}
 
 requirements:
   build:
     - {{ compiler('cxx') }}
   host:
     - python
-    - setuptools
+    - pip
+    - cython
   run:
     - python
 
@@ -26,6 +30,15 @@ test:
 
 about:
   home: https://github.com/Martinsos/edlib
-  license: MIT License
+  license: MIT
   summary: 'Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.'
   license_family: MIT
+  license_file: LICENSE
+  dev_url: https://github.com/Martinsos/edlib
+  doc_url: https://martinsos.github.io/edlib/
+
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - doi:10.1093/bioinformatics/btw753
diff --git a/recipes/python-hivclustering/build.sh b/recipes/python-hivclustering/build.sh
deleted file mode 100644
index 10be366945a36..0000000000000
--- a/recipes/python-hivclustering/build.sh
+++ /dev/null
@@ -1,3 +0,0 @@
-#!/bin/bash
-
-python3 setup.py install --single-version-externally-managed --record=record.txt
diff --git a/recipes/python-hivclustering/meta.yaml b/recipes/python-hivclustering/meta.yaml
index 8b8075c6d80d9..e6836779451a5 100644
--- a/recipes/python-hivclustering/meta.yaml
+++ b/recipes/python-hivclustering/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.6.7" %}
+{% set version = "1.6.8" %}
 {% set name = "hivclustering" %}
 
 package:
@@ -7,16 +7,19 @@ package:
 
 source:
   url: https://github.com/veg/{{ name }}/archive/{{ version }}.tar.gz
-  sha256: a50bbdf9b51473f576a7c451958217c5670c97d58bd40d96c5046062c7c7a5c1
+  sha256: 63ff148ee265a273156c51b4727f5f00a07f9c3306d17f122c4c6c6ab9d41ecb
 
 build:
   noarch: python
   number: 0
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  run_exports:
+    - {{ pin_subpackage('python-hivclustering', max_pin="x") }}
 
 requirements:
   host:
     - python >=3
-    - setuptools
+    - pip
   run:
     - python >=3
     - python-bioext >=0.19.0
@@ -30,4 +33,5 @@ test:
 about:
   home: https://github.com/veg/hivclustering
   license: MIT
+  license_family: MIT
   summary: 'A Python 3 library that makes inferences on HIV-1 transmission networks.'
diff --git a/recipes/python-msgpack/meta.yaml b/recipes/python-msgpack/meta.yaml
index 7813176a17dcd..3df723ced1e0e 100644
--- a/recipes/python-msgpack/meta.yaml
+++ b/recipes/python-msgpack/meta.yaml
@@ -7,7 +7,9 @@ source:
   url: https://files.pythonhosted.org/packages/81/9c/0036c66234482044070836cc622266839e2412f8108849ab0bfdeaab8578/msgpack-{{ version }}.tar.gz
   sha256: 4008c72f5ef2b7936447dcb83db41d97e9791c83221be13d5e19db0796df1972
 build:
-  number: 8
+  number: 9
+  run_exports:
+    - {{ pin_subpackage('python-msgpack', max_pin='x.x') }}
 requirements:
   build:
     - {{ compiler('cxx') }}
@@ -24,4 +26,6 @@ about:
   license: Apache 2.0
   summary: "It's like JSON. But fast and small."
 extra:
+  additional-platforms:
+    - linux-aarch64
   web: http://msgpack.org/
diff --git a/recipes/python-nextflow/meta.yaml b/recipes/python-nextflow/meta.yaml
index 232f4fdf083af..6b8d2d363e5ab 100644
--- a/recipes/python-nextflow/meta.yaml
+++ b/recipes/python-nextflow/meta.yaml
@@ -1,6 +1,6 @@
 {% set name="python-nextflow" %}
 {% set repo="nextflow.py" %}
-{% set version="0.7" %}
+{% set version="0.8" %}
 
 
 package:
@@ -10,28 +10,30 @@ package:
 build:
   noarch: python
   number: 0
-  script: python -m pip install --no-deps --ignore-installed .
+  script: {{ PYTHON }} -m pip install --no-deps --ignore-installed -vvv .
+  run_exports:
+    - {{ pin_subpackage('python-nextflow', max_pin="x") }}
 
 source:
   url: https://github.com/goodwright/{{ repo }}/archive/v{{ version }}.tar.gz
-  sha256: 8f614a447d29297b8e481c785874eaa2217e613fc93c0712ae2eaef1045a97f8
+  sha256: b39b34adaf1ed487534c9bad0a322bf5b495ea6cc6a2160aa757ba17e70736a4
 
 requirements:
   host:
     - python >=3.6,<=3.10
     - pip
-    - setuptools
   run:
     - python >=3.6,<=3.10
     - nextflow
 
 test:
-  commands:
-    - python -c "import nextflow"
- 
+  imports:
+    - nextflow
+
 about:
   home: https://github.com/goodwright/{{ repo }}/
   license: 'MIT'
+  license_file: LICENSE
   summary: 'Python module to run Nextflow pipelines'
 
 extra:
diff --git a/recipes/pythoncyc/meta.yaml b/recipes/pythoncyc/meta.yaml
new file mode 100644
index 0000000000000..79bd9ac6ca10b
--- /dev/null
+++ b/recipes/pythoncyc/meta.yaml
@@ -0,0 +1,43 @@
+{% set name = "pythoncyc" %}
+{% set version = "2.0.2" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/PythonCyc-{{ version }}.tar.gz
+  sha256: 05cb733ab7890eaf960f31cd289d59eca6f24bb154ed48052158041e68f7e4f7
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('pythoncyc', max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.0
+    - pip
+  run:
+    - python >=3.0
+
+test:
+  imports:
+    - pythoncyc
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/networkbiolab/PythonCyc
+  summary: A Python interface to Pathway Tools, 2019 update
+  dev_url: https://github.com/networkbiolab/PythonCyc
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - acaprez
diff --git a/recipes/pytransaln/meta.yaml b/recipes/pytransaln/meta.yaml
new file mode 100644
index 0000000000000..d3c02cd1a111b
--- /dev/null
+++ b/recipes/pytransaln/meta.yaml
@@ -0,0 +1,50 @@
+{% set name = "pytransaln" %}
+{% set version = "0.2.1" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/pytransaln-{{ version }}.tar.gz
+  sha256: 280a035573dc2e709d226b628fbee41d1ee6afcff5f7a7185aac05135314a2e2
+
+build:
+  entry_points:
+    - pytransaln = pytransaln.pytransaln:main
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('pytransaln', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python
+    - setuptools >=61.0.0
+    - pip
+  run:
+    - python
+    - biopython >=1.80,<2
+    - pandas >=1.3,<3
+    - matplotlib-base >=3.6,<4
+    - pyhmmer ==0.10
+
+test:
+  imports:
+    - pytransaln
+  commands:
+    - pip check
+    - pytransaln --help
+  requires:
+    - pip
+
+about:
+  home: https://github.com/monagrland/pytransaln
+  summary: Translation-guided nucleotide alignment for coding sequences
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - kbseah
diff --git a/recipes/pytrf/meta.yaml b/recipes/pytrf/meta.yaml
new file mode 100644
index 0000000000000..209d0d802eb4b
--- /dev/null
+++ b/recipes/pytrf/meta.yaml
@@ -0,0 +1,38 @@
+{% set name = "pytrf" %}
+{% set version = "1.3.0" %}
+{% set sha256 = "624497536b4e9a5cb8bbddb7ead7a2253a89b27ccf872178e9a8d975e21695f6" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://github.com/lmdu/{{ name }}/archive/refs/tags/{{ version }}.tar.gz"
+  sha256: "{{ sha256 }}"
+
+build:
+  number: 0
+  skip: True  # [py < 36]
+  script: "{{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv"
+  run_exports:
+    - {{ pin_subpackage("pytrf", max_pin="x.x") }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+  host:
+    - pip
+    - python
+  run:
+    - python
+
+test:
+  imports:
+    - pytrf
+
+about:
+  home: "https://github.com/lmdu/pytrf"
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "a fast Python package for finding tandem repeat sequences"
diff --git a/recipes/pywfa/meta.yaml b/recipes/pywfa/meta.yaml
index 5cd6c083ebf3c..3302c0942e5a9 100644
--- a/recipes/pywfa/meta.yaml
+++ b/recipes/pywfa/meta.yaml
@@ -11,7 +11,10 @@ source:
   sha256: {{ sha256hash }}
 
 build:
-  number: 0
+  number: 2
+  skip: True  # [py < 37 or py > 39]
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
   binary_relocation: False
   script: $PYTHON -m pip install --no-deps --ignore-installed .
 
@@ -21,13 +24,13 @@ requirements:
     - {{ compiler('c') }}
   host:
     - pip
-    - python >=3.7
+    - python
     - cython
     - setuptools
+  run:
+    - python
   
 test:
-  requires:
-    - python >=3.7
   imports:
     - pywfa
 
@@ -38,6 +41,6 @@ about:
   license_file: LICENSE
 
 extra:
-    recipe-maintainers:
+  recipe-maintainers:
     - kcleal
     
diff --git a/recipes/qiskit-xyz2pdb/meta.yaml b/recipes/qiskit-xyz2pdb/meta.yaml
index 6065ef146b73c..940e187f0efd2 100644
--- a/recipes/qiskit-xyz2pdb/meta.yaml
+++ b/recipes/qiskit-xyz2pdb/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "qiskit-xyz2pdb" %}
-{% set version = "0.1.0" %}
+{% set version = "0.1.2" %}
 
 package:
   name: {{ name|lower }}
@@ -7,7 +7,7 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: aabd4c37258d9d45db8c0cf89b19368497de6d7c15a514bb9f616b3f5871eab9
+  sha256: 04fd1e61c614f1e76d2e5ac3b79eada20244c36d3193730297cae75fd0c51f43
 
 build:
   number: 0
@@ -21,8 +21,10 @@ requirements:
     - python >=3.6
     - pip
     - setuptools
+    - numpy
   run:
     - python >=3.6
+    - numpy
 
 test:
   imports:
diff --git a/recipes/qtlseq/meta.yaml b/recipes/qtlseq/meta.yaml
index a40f2b3551081..9e3efa1cb9d99 100644
--- a/recipes/qtlseq/meta.yaml
+++ b/recipes/qtlseq/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "qtlseq" %}
-{% set version = "2.2.3" %}
-{% set sha256 = "fb6e641f100316cd178254fc1f196cc5dd7bbebb18f2997c29cd896a997227d1" %}
+{% set version = "2.2.4" %}
+{% set sha256 = "af19375c3d5685f24412e6dfad513d8abea5998d938b9675b1091424f243fdb6" %}
 
 package:
   name: {{ name|lower }}
@@ -14,6 +14,8 @@ build:
   script: python -m pip install --no-deps --ignore-installed .
   noarch: python
   number: 0
+  run_exports:
+    - {{ pin_subpackage('qtlseq', max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/qualimap/meta.yaml b/recipes/qualimap/meta.yaml
index 33d1b6e7bc9b9..ef8d7f3885d21 100644
--- a/recipes/qualimap/meta.yaml
+++ b/recipes/qualimap/meta.yaml
@@ -1,14 +1,16 @@
 package:
   name: qualimap
-  version: "2.2.2d"
+  version: "2.3"
 
 source:
-  url: https://bitbucket.org/kokonech/qualimap/downloads/qualimap-build-11-11-19.tar.gz
-  md5: a9afa75339f8b67f75706ec46095d08c
+  url: https://bitbucket.org/kokonech/qualimap/downloads/qualimap_v2.3.zip
+  md5: dfe659cb950b7902ee5c57aeab35eaff
 
 build:
-  number: 2
+  number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('qualimap', max_pin="x") }}
 
 requirements:
   run:
@@ -27,7 +29,7 @@ test:
 
 about:
   home: http://qualimap.bioinfo.cipf.es/
-  license: GPLv2
+  license: GPL-2.0-or-later
   license_file: LICENSE
   summary: Quality control of alignment sequencing data and its derivatives like feature counts
 
diff --git a/recipes/quantiprot/meta.yaml b/recipes/quantiprot/meta.yaml
index 5a47c1918c10e..459058dd298b8 100644
--- a/recipes/quantiprot/meta.yaml
+++ b/recipes/quantiprot/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "quantiprot" %}
-{% set version = "0.2.4" %}
+{% set version = "0.2.5" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: "4cddcb81eeb2d2ee177367b97866c719641dcfaddd8e2153a5b91c92d00a5434"
+  sha256: "3fd64270399fcd764c3bf150993ab54b4f6d386e1145df97924799b1c53975fd"
 
 build:
   noarch: python
   number: 0
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
 
 requirements:
   host:
diff --git a/recipes/quast/build_failure.osx-64.yaml b/recipes/quast/build_failure.osx-64.yaml
deleted file mode 100644
index a7c6bce3f464b..0000000000000
--- a/recipes/quast/build_failure.osx-64.yaml
+++ /dev/null
@@ -1,104 +0,0 @@
-recipe_sha: 8237e906909f841e6f9591915ec9d3c10a947f897db59de841e5405f1d688b92  # The commit at which this recipe failed to build.
-skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
-log: |2-
-    adding 'quast_libs/minimap2/python/cmappy.h'
-    INFO  adding 'quast_libs/minimap2/python/cmappy.pxd'
-    adding 'quast_libs/minimap2/python/cmappy.pxd'
-    INFO  adding 'quast_libs/minimap2/python/mappy.pyx'
-    adding 'quast_libs/minimap2/python/mappy.pyx'
-    INFO  adding 'quast_libs/minimap2/python/minimap2.py'
-    adding 'quast_libs/minimap2/python/minimap2.py'
-    INFO  adding 'quast_libs/minimap2/sse2neon/emmintrin.h'
-    adding 'quast_libs/minimap2/sse2neon/emmintrin.h'
-    INFO  adding 'quast_libs/ra_utils/__init__.py'
-    adding 'quast_libs/ra_utils/__init__.py'
-    INFO  adding 'quast_libs/ra_utils/argparse.py'
-    adding 'quast_libs/ra_utils/argparse.py'
-    INFO  adding 'quast_libs/ra_utils/misc.py'
-    adding 'quast_libs/ra_utils/misc.py'
-    INFO  adding 'quast_libs/ra_utils/vcfToBedpe.py'
-    adding 'quast_libs/ra_utils/vcfToBedpe.py'
-    INFO  adding 'quast_libs/sambamba/sambamba_linux'
-    adding 'quast_libs/sambamba/sambamba_linux'
-    INFO  adding 'quast_libs/sambamba/sambamba_osx'
-    adding 'quast_libs/sambamba/sambamba_osx'
-    INFO  adding 'quast_libs/site_packages/__init__.py'
-    adding 'quast_libs/site_packages/__init__.py'
-    INFO  adding 'quast_libs/site_packages/_bz2.py'
-    adding 'quast_libs/site_packages/_bz2.py'
-    INFO  adding 'quast_libs/site_packages/_compression.py'
-    adding 'quast_libs/site_packages/_compression.py'
-    INFO  adding 'quast_libs/site_packages/bz2.py'
-    adding 'quast_libs/site_packages/bz2.py'
-    INFO  adding 'quast_libs/site_packages/ordered_dict.py'
-    adding 'quast_libs/site_packages/ordered_dict.py'
-    INFO  adding 'quast_libs/site_packages/jsontemplate/__init__.py'
-    adding 'quast_libs/site_packages/jsontemplate/__init__.py'
-    INFO  adding 'quast_libs/site_packages/jsontemplate/jsontemplate.py'
-    adding 'quast_libs/site_packages/jsontemplate/jsontemplate.py'
-    INFO  adding 'quast-5.2.0.dist-info/LICENSE.txt'
-    adding 'quast-5.2.0.dist-info/LICENSE.txt'
-    INFO  adding 'quast-5.2.0.dist-info/METADATA'
-    adding 'quast-5.2.0.dist-info/METADATA'
-    INFO  adding 'quast-5.2.0.dist-info/WHEEL'
-    adding 'quast-5.2.0.dist-info/WHEEL'
-    INFO  adding 'quast-5.2.0.dist-info/top_level.txt'
-    adding 'quast-5.2.0.dist-info/top_level.txt'
-    INFO  adding 'quast-5.2.0.dist-info/RECORD'
-    adding 'quast-5.2.0.dist-info/RECORD'
-    INFO  removing build/bdist.macosx-10.9-x86_64/wheel
-    removing build/bdist.macosx-10.9-x86_64/wheel
-    Building wheel for quast (setup.py): finished with status 'done'
-    Created wheel for quast: filename=quast-5.2.0-py3-none-any.whl size=12996553 sha256=95ee42f38e8b80a8659a77f57f83ff38db5e44342ae493a3b085160b7df6396f
-    Stored in directory: /private/tmp/pip-ephem-wheel-cache-2t0etpfr/wheels/5f/48/0f/e9fc35a974c2af5e84beac3740c829770b288236193c061309
-  Successfully built quast
-  Installing collected packages: quast
-
-  Successfully installed quast-5.2.0
-  Removed build tracker: '/private/tmp/pip-build-tracker-gi2wl7cm'
-  tail: /opt/mambaforge/envs/bioconda/conda-bld/quast_1685395312261/work/quast_libs/*/make.*: No such file or directory
-
-  Resource usage statistics from building quast:
-     Process count: 4
-     CPU time: Sys=0:00:02.5, User=0:00:05.3
-     Memory: 97.0M
-     Disk usage: 452.0K
-     Time elapsed: 0:00:17.0
-
-
-  compiling .pyc files...
-  number of files: 929
-  Making absolute symlink relative (bin/quast -> /opt/mambaforge/envs/bioconda/conda-bld/quast_1685395312261/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/opt/quast-5.2.0/quast.py :-> ../opt/quast-5.2.0/quast.py)
-  Making absolute symlink relative (bin/metaquast -> /opt/mambaforge/envs/bioconda/conda-bld/quast_1685395312261/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/opt/quast-5.2.0/metaquast.py :-> ../opt/quast-5.2.0/metaquast.py)
-  Making absolute symlink relative (opt/quast-5.2.0/quast_libs -> /opt/mambaforge/envs/bioconda/conda-bld/quast_1685395312261/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/lib/python3.8/site-packages/quast_libs :-> ../../lib/python3.8/site-packages/quast_libs)
-  Traceback (most recent call last):
-    File "/opt/mambaforge/envs/bioconda/bin/conda-mambabuild", line 10, in <module>
-      sys.exit(main())
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
-      call_conda_build(action, config)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
-      result = api.build(
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
-      return build_tree(
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
-      packages_from_this = build(metadata, stats,
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 2358, in build
-      newly_built_packages = bundlers[pkg_type](output_d, m, env, stats)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 1659, in bundle_conda
-      files = post_process_files(metadata, initial_files)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 1505, in post_process_files
-      post_build(m, new_files, build_python=python)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/post.py", line 1318, in post_build
-      post_process_shared_lib(m, f, prefix_files, host_prefix)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/post.py", line 1266, in post_process_shared_lib
-      mk_relative_osx(path, host_prefix, m, files=files, rpaths=rpaths)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/post.py", line 397, in mk_relative_osx
-      names = macho.otool(path, prefix)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/os_utils/macho.py", line 194, in otool
-      lines = check_output([otool, '-l', path],
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/subprocess.py", line 415, in check_output
-      return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/subprocess.py", line 516, in run
-      raise CalledProcessError(retcode, process.args,
-  subprocess.CalledProcessError: Command '['/opt/mambaforge/envs/bioconda/conda-bld/quast_1685395312261/_build_env/bin/llvm-otool', '-l', '/opt/mambaforge/envs/bioconda/conda-bld/quast_1685395312261/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/lib/python3.8/site-packages/quast_libs/sambamba/sambamba_osx']' died with <Signals.SIGABRT: 6>.
-# Last 100 lines of the build log.
diff --git a/recipes/quatradis/meta.yaml b/recipes/quatradis/meta.yaml
index 2881fed106ce8..a91fb4a8cd361 100644
--- a/recipes/quatradis/meta.yaml
+++ b/recipes/quatradis/meta.yaml
@@ -1,4 +1,4 @@
-{% set version="1.0.1" %}
+{% set version="1.3.0" %}
 
 package:
   name: quatradis
@@ -6,12 +6,14 @@ package:
 
 source:
   url: https://github.com/quadram-institute-bioscience/QuaTradis/archive/refs/tags/{{ version }}.tar.gz
-  sha256: 8ff35ebb615d6ab4698f3204d0517c432ac987cb4f570b1b0a0d2d2fadb73af4
+  sha256: 8634c61c93073028fc35df46b3d1337e7716924051c336a12172c65e1adb2e74
 
 build:
-  number: 1
+  number: 0
   script: python -m pip install -v --no-deps --ignore-installed .
-
+  run_exports:
+    - {{ pin_subpackage('quatradis', max_pin="x.x") }}
+    
 requirements:
   build:
     - {{ compiler('c') }}
diff --git a/recipes/query_phenomizer/meta.yaml b/recipes/query_phenomizer/meta.yaml
index a0d364e9a2741..b547aaff23c4b 100644
--- a/recipes/query_phenomizer/meta.yaml
+++ b/recipes/query_phenomizer/meta.yaml
@@ -1,25 +1,23 @@
 package:
   name: query_phenomizer
-  version: "1.2"
+  version: "1.2.1"
 
 source:
-  url: https://files.pythonhosted.org/packages/f8/a7/af989c9a672e267ef38009c32206f53c752cc7bac13b29b586c0b93a3da8/query_phenomizer-1.2.tar.gz
-  sha256: ae6f85331bfa7947fd0edf245780559581a7c728e563093d4b4dc44415517cc7
+  url: https://files.pythonhosted.org/packages/02/21/0e62f38dcf337727a4d3b7d18dc55b090296f43ac95a070c2dbe3e5ef24f/query_phenomizer-1.2.1.tar.gz
+  sha256: fe673970e435bf49fd4d7f14283d8f4e11546fca597a39abf8ca87158da9ca20
 
 build:
   number: 0
   noarch: python
   entry_points:
     - query_phenomizer = query_phenomizer.__main__:cli
-
+  run_exports:
+    - {{ pin_subpackage('query_phenomizer', max_pin="x") }}
 
 requirements:
   host:
     - python
-    - setuptools
-    - click
-    - requests
-    - pytest
+    - pip
   run:
     - python
     - click
@@ -30,14 +28,15 @@ test:
   # Python imports
   imports:
     - query_phenomizer
-
   commands:
     # click requires a unicode locale
     - query_phenomizer --help
 
 about:
   home: https://www.github.com/moonso/query_phenomizer
-  license: MIT License
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
   summary: 'Tool for query and parsing the phenomizer tool'
 
 extra:
diff --git a/recipes/querynator/meta.yaml b/recipes/querynator/meta.yaml
index fdbddc2f8f2f8..137289ca06a6d 100644
--- a/recipes/querynator/meta.yaml
+++ b/recipes/querynator/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "querynator" %}
-{% set version = "0.4.1" %}
+{% set version = "0.4.2" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,11 +7,13 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 394a48c700ce6c8940cf134ffe0cf1f58f2418fcc8fffef4509a9a08567bda1c
+  sha256: 869fec02e402428e68c522d0b906a6baaaa6cdecdcd83195f8d775e58ef635a4
 
 build:
   number: 0
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('querynator', max_pin="x") }}
   entry_points:
     - querynator=querynator.__main__:run_querynator
   script: "{{ PYTHON }} -m pip install . -vv"
diff --git a/recipes/quicktree/build.sh b/recipes/quicktree/build.sh
index 6796b7efd05b6..7d776e66d9e68 100644
--- a/recipes/quicktree/build.sh
+++ b/recipes/quicktree/build.sh
@@ -1,5 +1,12 @@
 #!/bin/bash
 
-mkdir -p $PREFIX/bin
+set -eux
+
+mkdir -p "$PREFIX"/{bin,lib,include/quicktree}
+
 make CC=$CC
+
 cp quicktree $PREFIX/bin
+cp libquicktree.so "${PREFIX}/lib/"
+# some header files are named generic enough to warrant namespacing
+cp include/*.h "${PREFIX}/include/quicktree/"
diff --git a/recipes/quicktree/meta.yaml b/recipes/quicktree/meta.yaml
index b663ce6822c58..8e9fe92a91c7a 100644
--- a/recipes/quicktree/meta.yaml
+++ b/recipes/quicktree/meta.yaml
@@ -1,21 +1,26 @@
+{% set name = "quicktree" %}
 {% set version = "2.5" %}
 
 package:
-  name: quicktree
+  name: {{ name }}
   version: {{ version }}
 
 source:
   url: https://github.com/khowe/quicktree/archive/v{{ version }}.tar.gz
   sha256: 731aa845ce3f1f0645bd0df2b54df75f78fce065d6a3ddc47fedf4bdcb11c248
+  patches:
+    - patches/0001-Add-rule-to-build-shared-library.patch
+    - patches/0002-Fix-segfault-in-sonLib-phylogeny-tests.patch
 
 build:
-  number: 4
+  number: 6
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   build:
     - make
     - {{ compiler('c') }}
-  run:
 
 test:
   commands:
diff --git a/recipes/quicktree/patches/0001-Add-rule-to-build-shared-library.patch b/recipes/quicktree/patches/0001-Add-rule-to-build-shared-library.patch
new file mode 100644
index 0000000000000..37c17acd29c9b
--- /dev/null
+++ b/recipes/quicktree/patches/0001-Add-rule-to-build-shared-library.patch
@@ -0,0 +1,43 @@
+From 6c92fb5efd973d1fa6a7ae05515ba54302be95c5 Mon Sep 17 00:00:00 2001
+From: Travis Wrightsman <tw493@cornell.edu>
+Date: Tue, 23 Jan 2024 23:01:04 -0500
+Subject: [PATCH] Add rule to build shared library
+
+---
+ Makefile | 9 ++++++---
+ 1 file changed, 6 insertions(+), 3 deletions(-)
+
+diff --git a/Makefile b/Makefile
+index 14e42a4..7fe8385 100644
+--- a/Makefile
++++ b/Makefile
+@@ -15,15 +15,18 @@ QUICKTREEOBJ = $(COMMON) $(OBJ)/quicktree.o $(OBJ)/buildtree.o $(OBJ)/tree.o
+ 
+ 
+ CC	= gcc
+-CFLAGS  = -c -I$(INC) -O2 -Wunused-result
++CFLAGS  = -c -I$(INC) -O2 -Wunused-result -fPIC
+ 
+ LFLAGS = -g 
+ 
+-all: quicktree
++all: quicktree libquicktree.so
+ 
+ quicktree : $(QUICKTREEOBJ)
+ 	$(CC) $(LFLAGS) -o $@ $(QUICKTREEOBJ) -lm
+ 
++libquicktree.so: $(QUICKTREEOBJ)
++	$(CC) -shared $(LFLAGS) -o $@ $(QUICKTREEOBJ) -lm
++
+ $(OBJ)/quicktree.o : $(SRC)/quicktree.c $(INC)/version.h
+ 	$(CC) $(CFLAGS) -o $(OBJ)/quicktree.o $(SRC)/quicktree.c
+ 
+@@ -52,4 +55,4 @@ $(OBJ)/options.o : $(SRC)/options.c $(INC)/options.h
+ 	$(CC) $(CFLAGS) -o $(OBJ)/options.o $(SRC)/options.c
+ 
+ clean:
+-	rm $(OBJ)/*.o quicktree
++	rm $(OBJ)/*.o quicktree libquicktree.so
+-- 
+2.39.2
+
diff --git a/recipes/quicktree/patches/0002-Fix-segfault-in-sonLib-phylogeny-tests.patch b/recipes/quicktree/patches/0002-Fix-segfault-in-sonLib-phylogeny-tests.patch
new file mode 100644
index 0000000000000..0e3f87c7aac7e
--- /dev/null
+++ b/recipes/quicktree/patches/0002-Fix-segfault-in-sonLib-phylogeny-tests.patch
@@ -0,0 +1,34 @@
+From c4470daeed25f720de4376a5f43820ba32c2cf61 Mon Sep 17 00:00:00 2001
+From: Travis Wrightsman <tw493@cornell.edu>
+Date: Tue, 23 Jan 2024 23:02:51 -0500
+Subject: [PATCH] Fix segfault in sonLib phylogeny tests
+
+---
+ src/tree.c | 4 ++--
+ 1 file changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/src/tree.c b/src/tree.c
+index 5b5187f..3bd8626 100644
+--- a/src/tree.c
++++ b/src/tree.c
+@@ -60,7 +60,7 @@ struct Tnode *clone_Tnode( struct Tnode *source) {
+   struct Tnode *dest = NULL;
+ 
+   if (source != NULL) {
+-    dest = (struct Tnode *) malloc_util( sizeof( struct Tnode ) );
++    dest = (struct Tnode *) calloc_util(1, sizeof( struct Tnode ) );
+     
+     dest->distance = source->distance;
+     dest->nodenumber = source->nodenumber;
+@@ -334,7 +334,7 @@ struct Tree *get_root_Tnode( struct Tree *source ) {
+ struct Tnode *new_interior_Tnode( unsigned int label ) {
+   struct Tnode *newNode;
+ 
+-  newNode = (struct Tnode *) malloc_util(sizeof(struct Tnode));
++  newNode = (struct Tnode *) calloc_util(1, sizeof(struct Tnode));
+   newNode->left = NULL;
+   newNode->right = NULL;
+   newNode->parent = NULL;
+-- 
+2.39.2
+
diff --git a/recipes/r-acidbase/meta.yaml b/recipes/r-acidbase/meta.yaml
index 25e4c88c549c2..bd6a6b423c173 100644
--- a/recipes/r-acidbase/meta.yaml
+++ b/recipes/r-acidbase/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.6.17" %}
+{% set version = "0.7.3" %}
 {% set github = "https://github.com/acidgenomics/r-acidbase" %}
 
 package:
@@ -7,39 +7,41 @@ package:
 
 source:
   url: "{{ github }}/archive/v{{ version }}.tar.gz"
-  sha256: 548c2492d7a204c19b9726fb470fce565ddebb8770f7c0ee5d56703afb8b13ca
+  sha256: 104b8c7907375ef5943217aa1565ef8fd01ac8bed4e4d9addc2aa489195b172d
 
 build:
-  number: 0
+  number: 1
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('r-acidbase', max_pin="x.x") }}
 
 requirements:
   host:
     # Depends:
     - r-base
     # Imports:
-    - bioconductor-biocgenerics >=0.44.0
-    - bioconductor-s4vectors >=0.36.0
-    - r-acidgenerics >=0.6.7
-    - r-goalie >=0.6.9
+    - bioconductor-biocgenerics >=0.48.0
+    - bioconductor-s4vectors >=0.40.0
+    - r-acidgenerics >=0.7.6
+    - r-goalie >=0.7.7
     # Suggests:
-    - r-acidcli >=0.2.7
+    - r-acidcli >=0.3.0
     - r-memuse >=4.2.3
-    - r-processx >=3.8.1
-    - r-withr >=2.5.0
+    - r-processx >=3.8.3
+    - r-withr >=2.5.2
   run:
     # Depends:
     - r-base
     # Imports:
-    - bioconductor-biocgenerics >=0.44.0
-    - bioconductor-s4vectors >=0.36.0
-    - r-acidgenerics >=0.6.7
-    - r-goalie >=0.6.9
+    - bioconductor-biocgenerics >=0.48.0
+    - bioconductor-s4vectors >=0.40.0
+    - r-acidgenerics >=0.7.6
+    - r-goalie >=0.7.7
     # Suggests:
-    - r-acidcli >=0.2.7
+    - r-acidcli >=0.3.0
     - r-memuse >=4.2.3
-    - r-processx >=3.8.1
-    - r-withr >=2.5.0
+    - r-processx >=3.8.3
+    - r-withr >=2.5.2
 
 test:
   commands:
diff --git a/recipes/r-acidcli/meta.yaml b/recipes/r-acidcli/meta.yaml
index 1d66ba9b8967a..3b96b51a9342c 100644
--- a/recipes/r-acidcli/meta.yaml
+++ b/recipes/r-acidcli/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.2.7" %}
+{% set version = "0.3.0" %}
 {% set github = "https://github.com/acidgenomics/r-acidcli" %}
 
 package:
@@ -7,29 +7,31 @@ package:
 
 source:
   url: "{{ github }}/archive/v{{ version }}.tar.gz"
-  sha256: b27b6f9c6f7990a1a41bd0b650f870bcd18e0f4541ccc7a398676306cf1fbf55
+  sha256: 451c595aefad37abede3f37ba0b64f20d41eb3513146dc80124adf92414e9546
 
 build:
-  number: 2
+  number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('r-acidcli', max_pin="x.x") }}
 
 requirements:
   host:
     # Depends:
-    - r-base >=4.2
+    - r-base
     # Imports:
-    - r-cli >=3.6.0
+    - r-cli >=3.6.1
     - r-crayon >=1.5.2
-    - r-goalie >=0.6.7
-    - r-rlang >=1.0.6
+    - r-goalie >=0.7.0
+    - r-rlang >=1.1.1
   run:
     # Depends:
-    - r-base >=4.2
+    - r-base
     # Imports:
-    - r-cli >=3.6.0
+    - r-cli >=3.6.1
     - r-crayon >=1.5.2
-    - r-goalie >=0.6.7
-    - r-rlang >=1.0.6
+    - r-goalie >=0.7.0
+    - r-rlang >=1.1.1
 
 test:
   commands:
diff --git a/recipes/r-acidexperiment/meta.yaml b/recipes/r-acidexperiment/meta.yaml
index cc61d227b3d89..7b252486f45e8 100644
--- a/recipes/r-acidexperiment/meta.yaml
+++ b/recipes/r-acidexperiment/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.4.7" %}
+{% set version = "0.5.4" %}
 {% set github = "https://github.com/acidgenomics/r-acidexperiment" %}
 
 package:
@@ -7,66 +7,61 @@ package:
 
 source:
   url: "{{ github }}/archive/v{{ version }}.tar.gz"
-  sha256: 0dd42744cb2953550fb15fda5b4a59d87d00b12aa117f7c9f0cd6965436ed38c
+  sha256: 4b8d093269e15d11a7565e4144d17caeac59e0491043bb3639713a9b769b5918
 
 build:
-  number: 2
+  number: 0
   noarch: generic
-  rpaths:
-    - lib/R/lib/
-    - lib/
+  run_exports:
+    - {{ pin_subpackage('r-acidexperiment', max_pin="x.x") }}
 
 requirements:
   host:
     # Depends:
     - r-base
     # Imports:
-    - bioconductor-biobase >=2.58.0
-    - bioconductor-biocgenerics >=0.44.0
-    - bioconductor-genomicranges >=1.50.0
-    - bioconductor-iranges >=2.32.0
-    - bioconductor-multiassayexperiment >=1.24.0
-    - bioconductor-s4vectors >=0.36.0
-    - bioconductor-summarizedexperiment >=1.28.0
-    - r-acidbase >=0.6.15
-    - r-acidcli >=0.2.7
-    - r-acidgenerics >=0.6.7
-    - r-acidgenomes >=0.5.0
-    - r-acidplyr >=0.3.10
-    - r-goalie >=0.6.9
-    - r-matrix >=1.5.4
-    - r-pipette >=0.10.9
-    - r-syntactic >=0.6.5
+    - bioconductor-biobase >=2.60.0
+    - bioconductor-biocgenerics >=0.46.0
+    - bioconductor-genomicranges >=1.52.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - bioconductor-summarizedexperiment >=1.30.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.3.0
+    - r-acidgenerics >=0.7.1
+    - r-acidgenomes >=0.6.0
+    - r-acidplyr >=0.5.0
+    - r-goalie >=0.7.0
+    - r-matrix >=1.6.1
+    - r-pipette >=0.14.0
+    - r-syntactic >=0.7.0
     # Suggests:
-    - bioconductor-biostrings >=2.66.0
-    - bioconductor-genomeinfodb >=1.34.0
+    - bioconductor-biostrings >=2.68.0
+    - bioconductor-genomeinfodb >=1.36.0
     - r-scales >=1.2.1
-    - r-stringi >=1.7.12
   run:
     # Depends:
     - r-base
     # Imports:
-    - bioconductor-biobase >=2.58.0
-    - bioconductor-biocgenerics >=0.44.0
-    - bioconductor-genomicranges >=1.50.0
-    - bioconductor-iranges >=2.32.0
-    - bioconductor-multiassayexperiment >=1.24.0
-    - bioconductor-s4vectors >=0.36.0
-    - bioconductor-summarizedexperiment >=1.28.0
-    - r-acidbase >=0.6.15
-    - r-acidcli >=0.2.7
-    - r-acidgenerics >=0.6.7
-    - r-acidgenomes >=0.5.0
-    - r-acidplyr >=0.3.10
-    - r-goalie >=0.6.9
-    - r-matrix >=1.5.4
-    - r-pipette >=0.10.9
-    - r-syntactic >=0.6.5
+    - bioconductor-biobase >=2.60.0
+    - bioconductor-biocgenerics >=0.46.0
+    - bioconductor-genomicranges >=1.52.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - bioconductor-summarizedexperiment >=1.30.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.3.0
+    - r-acidgenerics >=0.7.1
+    - r-acidgenomes >=0.6.0
+    - r-acidplyr >=0.5.0
+    - r-goalie >=0.7.0
+    - r-matrix >=1.6.1
+    - r-pipette >=0.14.0
+    - r-syntactic >=0.7.0
     # Suggests:
-    - bioconductor-biostrings >=2.66.0
-    - bioconductor-genomeinfodb >=1.34.0
+    - bioconductor-biostrings >=2.68.0
+    - bioconductor-genomeinfodb >=1.36.0
     - r-scales >=1.2.1
-    - r-stringi >=1.7.12
 
 test:
   commands:
diff --git a/recipes/r-acidgenerics/meta.yaml b/recipes/r-acidgenerics/meta.yaml
index da51923f74627..e3a427c3792d3 100644
--- a/recipes/r-acidgenerics/meta.yaml
+++ b/recipes/r-acidgenerics/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.6.7" %}
+{% set version = "0.7.8" %}
 {% set github = "https://github.com/acidgenomics/r-acidgenerics" %}
 
 package:
@@ -7,17 +7,19 @@ package:
 
 source:
   url: "{{ github }}/archive/v{{ version }}.tar.gz"
-  sha256: 095d751088d965cc5f602fc44e68426ee358e6d8fbb1f1172b5fb2be2a500118
+  sha256: baa0346b8cd0ebcdbef2d15028eb2d0c425731acfea718f057c6faef1606ff3b
 
 build:
-  number: 2
+  number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('r-acidgenerics', max_pin="x.x") }}
 
 requirements:
   host:
-    - r-base >=4.2
+    - r-base
   run:
-    - r-base >=4.2
+    - r-base
 
 test:
   commands:
diff --git a/recipes/r-acidgenomes/meta.yaml b/recipes/r-acidgenomes/meta.yaml
index b034d15098e53..ef00b8d102371 100644
--- a/recipes/r-acidgenomes/meta.yaml
+++ b/recipes/r-acidgenomes/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.5.0" %}
+{% set version = "0.7.2" %}
 {% set github = "https://github.com/acidgenomics/r-acidgenomes" %}
 
 package:
@@ -7,63 +7,63 @@ package:
 
 source:
   url: "{{ github }}/archive/v{{ version }}.tar.gz"
-  sha256: 60cfa3476363bfc8ec876667091f498f1d2f6ed8aa1361cc82347dbcb8b5ce67
+  sha256: 7305aeaadbb0507c49b59f3b12971fd6d0f3504473f196f68ac20f59e751d131
 
 build:
-  number: 2
+  number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('r-acidgenomes', max_pin="x.x") }}
 
 requirements:
   host:
     # Depends:
     - r-base
     # Imports:
-    - bioconductor-biocgenerics >=0.44.0
-    - bioconductor-genomeinfodb >=1.34.0
-    - bioconductor-genomicranges >=1.50.0
-    - bioconductor-iranges >=2.32.0
-    - bioconductor-s4vectors >=0.36.0
-    - r-acidbase >=0.6.15
-    - r-acidcli >=0.2.7
-    - r-acidgenerics >=0.6.7
-    - r-acidplyr >=0.3.9
-    - r-goalie >=0.6.9
-    - r-pipette >=0.10.9
-    - r-stringi >=1.7.12
-    - r-syntactic >=0.6.5
+    - bioconductor-biocgenerics >=0.46.0
+    - bioconductor-genomeinfodb >=1.36.0
+    - bioconductor-genomicranges >=1.52.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.3.0
+    - r-acidgenerics >=0.7.1
+    - r-acidplyr >=0.5.0
+    - r-goalie >=0.7.0
+    - r-pipette >=0.14.0
+    - r-syntactic >=0.7.0
     # Suggests:
-    - bioconductor-annotationdbi >=1.60.0
-    - bioconductor-annotationhub >=3.6.0
-    - bioconductor-biomart >=2.54.0
-    - bioconductor-ensembldb >=2.22.0
-    - bioconductor-genomicfeatures >=1.50.0
-    - r-rcurl >=1.98
+    - bioconductor-annotationdbi >=1.62.0
+    - bioconductor-annotationhub >=3.8.0
+    - bioconductor-biocfilecache >=2.8.0
+    - bioconductor-biomart >=2.56.0
+    - bioconductor-ensembldb >=2.24.0
+    - bioconductor-genomicfeatures >=1.52.0
     - r-rvest >=1.0.3
     - r-withr >=2.5.0
   run:
     # Depends:
     - r-base
     # Imports:
-    - bioconductor-biocgenerics >=0.44.0
-    - bioconductor-genomeinfodb >=1.34.0
-    - bioconductor-genomicranges >=1.50.0
-    - bioconductor-iranges >=2.32.0
-    - bioconductor-s4vectors >=0.36.0
-    - r-acidbase >=0.6.15
-    - r-acidcli >=0.2.7
-    - r-acidgenerics >=0.6.7
-    - r-acidplyr >=0.3.9
-    - r-goalie >=0.6.9
-    - r-pipette >=0.10.9
-    - r-stringi >=1.7.12
-    - r-syntactic >=0.6.5
+    - bioconductor-biocgenerics >=0.46.0
+    - bioconductor-genomeinfodb >=1.36.0
+    - bioconductor-genomicranges >=1.52.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.3.0
+    - r-acidgenerics >=0.7.1
+    - r-acidplyr >=0.5.0
+    - r-goalie >=0.7.0
+    - r-pipette >=0.14.0
+    - r-syntactic >=0.7.0
     # Suggests:
-    - bioconductor-annotationdbi >=1.60.0
-    - bioconductor-annotationhub >=3.6.0
-    - bioconductor-biomart >=2.54.0
-    - bioconductor-ensembldb >=2.22.0
-    - bioconductor-genomicfeatures >=1.50.0
-    - r-rcurl >=1.98
+    - bioconductor-annotationdbi >=1.62.0
+    - bioconductor-annotationhub >=3.8.0
+    - bioconductor-biocfilecache >=2.8.0
+    - bioconductor-biomart >=2.56.0
+    - bioconductor-ensembldb >=2.24.0
+    - bioconductor-genomicfeatures >=1.52.0
     - r-rvest >=1.0.3
     - r-withr >=2.5.0
 
diff --git a/recipes/r-acidgsea/meta.yaml b/recipes/r-acidgsea/meta.yaml
index e4260844e78d2..557872f114317 100644
--- a/recipes/r-acidgsea/meta.yaml
+++ b/recipes/r-acidgsea/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.8.8" %}
+{% set version = "0.9.0" %}
 {% set github = "https://github.com/acidgenomics/r-acidgsea" %}
 
 package:
@@ -7,72 +7,69 @@ package:
 
 source:
   url: "{{ github }}/archive/v{{ version }}.tar.gz"
-  sha256: 73678edbac84cf77eef75d8e917d3c2bad89f67a3fe7d64fbe7ee5e6481e3a4c
+  sha256: 7ebe40096263d7d8ae4fd2c0ec49b2a3afcb45fb26d7ba1816d99fd16b3ff73e
 
 build:
-  number: 2
+  number: 0
   noarch: generic
-  rpaths:
-    - lib/R/lib/
-    - lib/
+  run_exports:
+    - {{ pin_subpackage('r-acidgsea', max_pin="x.x") }}
 
 requirements:
   host:
     # Depends:
     - r-base
     # Imports:
-    - bioconductor-biocgenerics >=0.44.0
-    - bioconductor-fgsea >=1.24.0
-    - bioconductor-genomeinfodb >=1.34.0
-    - bioconductor-iranges >=2.32.0
-    - bioconductor-s4vectors >=0.36.0
-    - bioconductor-summarizedexperiment >=1.28.0
-    - r-acidbase >=0.6.15
-    - r-acidcli >=0.2.7
-    - r-acidexperiment >=0.4.7
-    - r-acidgenerics >=0.6.7
-    - r-acidgenomes >=0.5.0
-    - r-acidmarkdown >=0.2.5
-    - r-acidplots >=0.5.5
-    - r-acidplyr >=0.3.10
-    - r-deseqanalysis >=0.6.8
-    - r-ggplot2 >=3.4.2
-    - r-goalie >=0.6.9
-    - r-pipette >=0.10.9
-    - r-syntactic >=0.6.5
+    - bioconductor-biocgenerics >=0.46.0
+    - bioconductor-fgsea >=1.26.0
+    - bioconductor-genomeinfodb >=1.36.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - bioconductor-summarizedexperiment >=1.30.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.3.0
+    - r-acidexperiment >=0.5.0
+    - r-acidgenerics >=0.7.1
+    - r-acidgenomes >=0.6.0
+    - r-acidmarkdown >=0.3.0
+    - r-acidplots >=0.7.0
+    - r-acidplyr >=0.5.0
+    - r-deseqanalysis >=0.7.0
+    - r-ggplot2 >=3.4.3
+    - r-goalie >=0.7.1
+    - r-pipette >=0.14.0
+    - r-syntactic >=0.7.0
     # Suggests:
-    - bioconductor-biocparallel >=1.32.0
-    - r-basejump >=0.16.5
-    - r-knitr >=1.42
-    - r-rmarkdown >=2.17
+    - r-basejump >=0.18.0
+    - r-knitr >=1.44
+    - r-rmarkdown >=2.25
   run:
     # Depends:
     - r-base
     # Imports:
-    - bioconductor-biocgenerics >=0.44.0
-    - bioconductor-fgsea >=1.24.0
-    - bioconductor-genomeinfodb >=1.34.0
-    - bioconductor-iranges >=2.32.0
-    - bioconductor-s4vectors >=0.36.0
-    - bioconductor-summarizedexperiment >=1.28.0
-    - r-acidbase >=0.6.15
-    - r-acidcli >=0.2.7
-    - r-acidexperiment >=0.4.7
-    - r-acidgenerics >=0.6.7
-    - r-acidgenomes >=0.5.0
-    - r-acidmarkdown >=0.2.5
-    - r-acidplots >=0.5.5
-    - r-acidplyr >=0.3.10
-    - r-deseqanalysis >=0.6.8
-    - r-ggplot2 >=3.4.2
-    - r-goalie >=0.6.9
-    - r-pipette >=0.10.9
-    - r-syntactic >=0.6.5
+    - bioconductor-biocgenerics >=0.46.0
+    - bioconductor-fgsea >=1.26.0
+    - bioconductor-genomeinfodb >=1.36.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - bioconductor-summarizedexperiment >=1.30.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.3.0
+    - r-acidexperiment >=0.5.0
+    - r-acidgenerics >=0.7.1
+    - r-acidgenomes >=0.6.0
+    - r-acidmarkdown >=0.3.0
+    - r-acidplots >=0.7.0
+    - r-acidplyr >=0.5.0
+    - r-deseqanalysis >=0.7.0
+    - r-ggplot2 >=3.4.3
+    - r-goalie >=0.7.1
+    - r-pipette >=0.14.0
+    - r-syntactic >=0.7.0
     # Suggests:
-    - bioconductor-biocparallel >=1.32.0
-    - r-basejump >=0.16.5
-    - r-knitr >=1.42
-    - r-rmarkdown >=2.17
+    - r-basejump >=0.18.0
+    - r-knitr >=1.44
+    - r-rmarkdown >=2.25
 
 test:
   commands:
diff --git a/recipes/r-acidmarkdown/meta.yaml b/recipes/r-acidmarkdown/meta.yaml
index 524ecfb8e9982..0599b28ba64c8 100644
--- a/recipes/r-acidmarkdown/meta.yaml
+++ b/recipes/r-acidmarkdown/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.2.5" %}
+{% set version = "0.3.0" %}
 {% set github = "https://github.com/acidgenomics/r-acidmarkdown" %}
 
 package:
@@ -7,30 +7,31 @@ package:
 
 source:
   url: "{{ github }}/archive/v{{ version }}.tar.gz"
-  sha256: cd875e70167137312ada7dad289eaae58817d943604a15c862fa95bd0ca87514
+  sha256: 159dfee3894b5e95f8316e5ac82a812dd976b3e07d78ace9261570d0f115fe06
 
 build:
-  number: 2
+  number: 0
   noarch: generic
-  rpaths:
-    - lib/R/lib/
-    - lib/
+  run_exports:
+    - {{ pin_subpackage('r-acidmarkdown', max_pin="x.x") }}
 
 requirements:
   host:
     # Depends:
-    - r-base >=4.2
+    - r-base
     # Imports:
-    - r-acidgenerics >=0.6.4
-    - r-goalie >=0.6.6
-    - r-knitr >=1.40
+    - r-acidgenerics
+    - r-goalie
+    # Suggests:
+    - r-knitr
   run:
     # Depends:
-    - r-base >=4.2
+    - r-base
     # Imports:
-    - r-acidgenerics >=0.6.4
-    - r-goalie >=0.6.6
-    - r-knitr >=1.40
+    - r-acidgenerics
+    - r-goalie
+    # Suggests:
+    - r-knitr
 
 test:
   commands:
diff --git a/recipes/r-acidplots/meta.yaml b/recipes/r-acidplots/meta.yaml
index 1b9d1845096e2..491f5b79bb3d1 100644
--- a/recipes/r-acidplots/meta.yaml
+++ b/recipes/r-acidplots/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.5.5" %}
+{% set version = "0.7.3" %}
 {% set github = "https://github.com/acidgenomics/r-acidplots" %}
 
 package:
@@ -7,89 +7,87 @@ package:
 
 source:
   url: "{{ github }}/archive/v{{ version }}.tar.gz"
-  sha256: 9d3fbb7e532300f2cc110e0dd41e1c5b578225eb4bf764e21c2fb677655d783a
+  sha256: d329072ba00d062ccef15a510aac73fc918b6f9db2d47dbfd5ffd82afc70c548
 
 build:
   noarch: generic
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('r-acidplots', max_pin="x.x") }}
 
 requirements:
   host:
     # Depends:
     - r-base
     # Imports:
-    - bioconductor-biobase >=2.58.0
-    - bioconductor-biocgenerics >=0.44.0
-    - bioconductor-iranges >=2.32.0
-    - bioconductor-s4vectors >=0.36.0
-    - bioconductor-singlecellexperiment >=1.20.0
-    - bioconductor-summarizedexperiment >=1.28.0
-    - r-acidbase >=0.6.15
-    - r-acidcli >=0.2.7
-    - r-acidexperiment >=0.4.7
-    - r-acidgenerics >=0.6.7
-    - r-acidgenomes >=0.5.0
-    - r-acidmarkdown >=0.2.5
-    - r-acidplyr >=0.3.10
-    - r-acidsinglecell >=0.3.5
-    - r-ggplot2 >=3.4.2
-    - r-goalie >=0.6.9
-    - r-matrix >=1.5.4
-    - r-patchwork >=1.1.2
-    - r-pipette >=0.10.9
-    - r-rlang >=1.1.0
+    - bioconductor-biobase >=2.60.0
+    - bioconductor-biocgenerics >=0.46.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - bioconductor-singlecellexperiment >=1.22.0
+    - bioconductor-summarizedexperiment >=1.30.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.3.0
+    - r-acidexperiment >=0.5.0
+    - r-acidgenerics >=0.7.1
+    - r-acidgenomes >=0.6.0
+    - r-acidmarkdown >=0.3.0
+    - r-acidplyr >=0.5.0
+    - r-acidsinglecell >=0.4.0
+    - r-ggplot2 >=3.4.3
+    - r-goalie >=0.7.1
+    - r-matrix >=1.6.1
+    - r-patchwork >=1.1.3
+    - r-pipette >=0.14.0
+    - r-rlang >=1.1.1
     - r-scales >=1.2.1
-    - r-stringr >=1.5.0
-    - r-syntactic >=0.6.5
+    - r-syntactic >=0.7.0
     # Suggests:
-    - bioconductor-biocparallel >=1.32.0
-    - bioconductor-dropletutils >=1.18.0
+    - bioconductor-dropletutils >=1.20.0
     - r-complexupset >=1.3.3
-    - r-ggpmisc >=0.5.2
+    - r-ggpmisc >=0.5.4
     - r-ggrepel >=0.9.3
     - r-ggridges >=0.5.4
-    - r-matrixstats >=0.63.0
+    - r-matrixstats >=1.0.0
     - r-pheatmap >=1.0.12
     - r-rcolorbrewer >=1.1.3
-    - r-viridis >=0.6.2
+    - r-viridis >=0.6.4
   run:
     # Depends:
     - r-base
     # Imports:
-    - bioconductor-biobase >=2.58.0
-    - bioconductor-biocgenerics >=0.44.0
-    - bioconductor-iranges >=2.32.0
-    - bioconductor-s4vectors >=0.36.0
-    - bioconductor-singlecellexperiment >=1.20.0
-    - bioconductor-summarizedexperiment >=1.28.0
-    - r-acidbase >=0.6.15
-    - r-acidcli >=0.2.7
-    - r-acidexperiment >=0.4.7
-    - r-acidgenerics >=0.6.7
-    - r-acidgenomes >=0.5.0
-    - r-acidmarkdown >=0.2.5
-    - r-acidplyr >=0.3.10
-    - r-acidsinglecell >=0.3.5
-    - r-ggplot2 >=3.4.2
-    - r-goalie >=0.6.9
-    - r-matrix >=1.5.4
-    - r-patchwork >=1.1.2
-    - r-pipette >=0.10.9
-    - r-rlang >=1.1.0
+    - bioconductor-biobase >=2.60.0
+    - bioconductor-biocgenerics >=0.46.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - bioconductor-singlecellexperiment >=1.22.0
+    - bioconductor-summarizedexperiment >=1.30.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.3.0
+    - r-acidexperiment >=0.5.0
+    - r-acidgenerics >=0.7.1
+    - r-acidgenomes >=0.6.0
+    - r-acidmarkdown >=0.3.0
+    - r-acidplyr >=0.5.0
+    - r-acidsinglecell >=0.4.0
+    - r-ggplot2 >=3.4.3
+    - r-goalie >=0.7.1
+    - r-matrix >=1.6.1
+    - r-patchwork >=1.1.3
+    - r-pipette >=0.14.0
+    - r-rlang >=1.1.1
     - r-scales >=1.2.1
-    - r-stringr >=1.5.0
-    - r-syntactic >=0.6.5
+    - r-syntactic >=0.7.0
     # Suggests:
-    - bioconductor-biocparallel >=1.32.0
-    - bioconductor-dropletutils >=1.18.0
+    - bioconductor-dropletutils >=1.20.0
     - r-complexupset >=1.3.3
-    - r-ggpmisc >=0.5.2
+    - r-ggpmisc >=0.5.4
     - r-ggrepel >=0.9.3
     - r-ggridges >=0.5.4
-    - r-matrixstats >=0.63.0
+    - r-matrixstats >=1.0.0
     - r-pheatmap >=1.0.12
     - r-rcolorbrewer >=1.1.3
-    - r-viridis >=0.6.2
+    - r-viridis >=0.6.4
 
 test:
   commands:
diff --git a/recipes/r-acidplyr/meta.yaml b/recipes/r-acidplyr/meta.yaml
index 2595653e87cf3..e3ef97b68da93 100644
--- a/recipes/r-acidplyr/meta.yaml
+++ b/recipes/r-acidplyr/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.3.10" %}
+{% set version = "0.5.4" %}
 {% set github = "https://github.com/acidgenomics/r-acidplyr" %}
 
 package:
@@ -7,39 +7,33 @@ package:
 
 source:
   url: "{{ github }}/archive/v{{ version }}.tar.gz"
-  sha256: 3dadd35b680bcd090b2660d6516d13bc1827355b00ef11d2430b8f8e79c06565
-  
+  sha256: 6fd487f33b1ed9ccc1c2580003c8ea9907efd0fcf2b3875f27efa3ccf7d62e45
+
 build:
-  number: 2
+  number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('r-acidplyr', max_pin="x.x") }}
 
 requirements:
   host:
     # Depends:
     - r-base
     # Imports:
-    - bioconductor-biocgenerics >=0.44.0
-    - bioconductor-s4vectors >=0.36.0
-    - r-acidgenerics >=0.6.6
-    - r-goalie >=0.6.8
-    # Suggests:
-    - bioconductor-iranges >=2.32.0
-    - r-acidcli >=0.2.7
-    - r-pipette >=0.10.4
-    - r-tidyr >=1.3.0
+    - bioconductor-biocgenerics >=0.46.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - r-acidgenerics >=0.7.4
+    - r-goalie >=0.7.6
   run:
     # Depends:
     - r-base
     # Imports:
-    - bioconductor-biocgenerics >=0.44.0
-    - bioconductor-s4vectors >=0.36.0
-    - r-acidgenerics >=0.6.6
-    - r-goalie >=0.6.8
-    # Suggests:
-    - bioconductor-iranges >=2.32.0
-    - r-acidcli >=0.2.7
-    - r-pipette >=0.10.4
-    - r-tidyr >=1.3.0
+    - bioconductor-biocgenerics >=0.46.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - r-acidgenerics >=0.7.4
+    - r-goalie >=0.7.6
 
 test:
   commands:
diff --git a/recipes/r-acidsinglecell/meta.yaml b/recipes/r-acidsinglecell/meta.yaml
index 01558aa96bd09..962ac75f917b7 100644
--- a/recipes/r-acidsinglecell/meta.yaml
+++ b/recipes/r-acidsinglecell/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.3.5" %}
+{% set version = "0.4.2" %}
 {% set github = "https://github.com/acidgenomics/r-acidsinglecell" %}
 
 package:
@@ -7,69 +7,65 @@ package:
 
 source:
   url: "{{ github }}/archive/v{{ version }}.tar.gz"
-  sha256: 8fd2d56349c8377dbae16ce5e844ca259cd4d6793bcc13830b15af619350ecc9
+  sha256: cc3068a1653e99a218607a9a994d8ee13490ebe162c403a6a7805ba10bfc50b0
 
 build:
-  number: 2
+  number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('r-acidsinglecell', max_pin="x.x") }}
 
 requirements:
   host:
     # Depends:
     - r-base
     # Imports:
-    - bioconductor-biobase >=2.56.0
-    - bioconductor-biocgenerics >=0.42.0
-    - bioconductor-biocio >=1.6.0
-    - bioconductor-iranges >=2.30.1
-    - bioconductor-s4vectors >=0.34.0
-    - bioconductor-singlecellexperiment >=1.18.0
-    - bioconductor-summarizedexperiment >=1.26.0
-    - r-acidbase >=0.6.8
-    - r-acidcli >=0.2.4
-    - r-acidexperiment >=0.4.4
-    - r-acidgenerics >=0.6.4
-    - r-acidgenomes >=0.4.4
-    - r-acidplyr >=0.3.2
-    - r-goalie >=0.6.6
-    - r-matrix >=1.5.1
-    - r-pipette >=0.10.0
-    - r-stringi >=1.7.8
-    - r-syntactic >=0.6.3
+    - bioconductor-biobase >=2.60.0
+    - bioconductor-biocgenerics >=0.46.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - bioconductor-singlecellexperiment >=1.22.0
+    - bioconductor-summarizedexperiment >=1.30.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.3.0
+    - r-acidexperiment >=0.5.0
+    - r-acidgenerics >=0.7.1
+    - r-acidgenomes >=0.6.0
+    - r-acidplyr >=0.5.0
+    - r-goalie >=0.7.1
+    - r-matrix >=1.6.1
+    - r-pipette >=0.14.0
+    - r-syntactic >=0.7.0
     # Suggests:
-    - bioconductor-biocparallel >=1.30.0
-    - bioconductor-deseq2 >=1.36.0
-    - bioconductor-dropletutils >=1.16.0
-    - bioconductor-edger >=3.38.4
-    - bioconductor-scuttle >=1.6.3
+    - bioconductor-deseq2 >=1.40.0
+    - bioconductor-dropletutils >=1.20.0
+    - bioconductor-edger >=3.42.0
+    - bioconductor-scuttle >=1.10.0
   run:
     # Depends:
     - r-base
     # Imports:
-    - bioconductor-biobase >=2.56.0
-    - bioconductor-biocgenerics >=0.42.0
-    - bioconductor-biocio >=1.6.0
-    - bioconductor-iranges >=2.30.1
-    - bioconductor-s4vectors >=0.34.0
-    - bioconductor-singlecellexperiment >=1.18.0
-    - bioconductor-summarizedexperiment >=1.26.0
-    - r-acidbase >=0.6.8
-    - r-acidcli >=0.2.4
-    - r-acidexperiment >=0.4.4
-    - r-acidgenerics >=0.6.4
-    - r-acidgenomes >=0.4.4
-    - r-acidplyr >=0.3.2
-    - r-goalie >=0.6.6
-    - r-matrix >=1.5.1
-    - r-pipette >=0.10.0
-    - r-stringi >=1.7.8
-    - r-syntactic >=0.6.3
+    - bioconductor-biobase >=2.60.0
+    - bioconductor-biocgenerics >=0.46.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - bioconductor-singlecellexperiment >=1.22.0
+    - bioconductor-summarizedexperiment >=1.30.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.3.0
+    - r-acidexperiment >=0.5.0
+    - r-acidgenerics >=0.7.1
+    - r-acidgenomes >=0.6.0
+    - r-acidplyr >=0.5.0
+    - r-goalie >=0.7.1
+    - r-matrix >=1.6.1
+    - r-pipette >=0.14.0
+    - r-syntactic >=0.7.0
     # Suggests:
-    - bioconductor-biocparallel >=1.30.0
-    - bioconductor-deseq2 >=1.36.0
-    - bioconductor-dropletutils >=1.16.0
-    - bioconductor-edger >=3.38.4
-    - bioconductor-scuttle >=1.6.3
+    - bioconductor-deseq2 >=1.40.0
+    - bioconductor-dropletutils >=1.20.0
+    - bioconductor-edger >=3.42.0
+    - bioconductor-scuttle >=1.10.0
 
 test:
   commands:
diff --git a/recipes/r-ampvis2/meta.yaml b/recipes/r-ampvis2/meta.yaml
index fc5c07195db77..cb179f12c271e 100644
--- a/recipes/r-ampvis2/meta.yaml
+++ b/recipes/r-ampvis2/meta.yaml
@@ -1,20 +1,22 @@
 {% set name = "r-ampvis2" %}
-{% set version = "2.7.32" %}
+{% set version = "2.8.9" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://github.com/MadsAlbertsen/ampvis2/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: b75f2e92e3d8999e47b8004824b7d1e0a9bb7b0c5fb116296e11a0d87ec0ac4a
+  url:  https://github.com/KasperSkytte/ampvis2/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 0e94062ab2a366ed7a0dec0881fdfbaf7d650e153e3249bb73992766352a5a80
 
 build:
-  number: 2
+  number: 0
   noarch: generic
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage('r-ampvis2', max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/r-aroma.affymetrix/meta.yaml b/recipes/r-aroma.affymetrix/meta.yaml
index b28a7de9263f0..c8237d9eb4f99 100644
--- a/recipes/r-aroma.affymetrix/meta.yaml
+++ b/recipes/r-aroma.affymetrix/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '3.2.1' %}
+{% set version = '3.2.2' %}
 
 package:
   name: r-aroma.affymetrix
@@ -8,14 +8,16 @@ source:
   url:
     - {{ cran_mirror }}/src/contrib/aroma.affymetrix_{{ version }}.tar.gz
     - {{ cran_mirror }}/src/contrib/Archive/aroma.affymetrix/aroma.affymetrix_{{ version }}.tar.gz
-  sha256: 7aefbbddf94f6fc0ee2dec261f0caa6ca28d5f36aa7f7534ffb5f4e10ec4f5fb
+  sha256: 18e1c9479e3e41bdfff06769d0ff2d85fcae16042cfd0eefa4dbcd0c4f3c9c40
 
 build:
   noarch: generic
-  number: 3
+  number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage('r-aroma.affymetrix', max_pin="x.x") }}
 
 requirements:
   host:
@@ -60,3 +62,5 @@ about:
     Aroma Framework has successfully been used in studies to process tens of thousands
     of arrays.  This package has actively been used since 2006.
   license_family: LGPL
+  license_file:
+    - '{{ environ["PREFIX"] }}/lib/R/share/licenses/LGPL-2.1'
diff --git a/recipes/r-aroma.core/meta.yaml b/recipes/r-aroma.core/meta.yaml
index c2ec781553729..5d9c36cd653b2 100644
--- a/recipes/r-aroma.core/meta.yaml
+++ b/recipes/r-aroma.core/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '3.3.0' %}
+{% set version = '3.3.1' %}
 
 package:
   name: r-aroma.core
@@ -8,14 +8,16 @@ source:
   url:
     - {{ cran_mirror }}/src/contrib/aroma.core_{{ version }}.tar.gz
     - {{ cran_mirror }}/src/contrib/Archive/aroma.core/aroma.core_{{ version }}.tar.gz
-  sha256: 7b6ab7cc6079f6783b0eaa2c10a29492e53cfb3f05b7a298588491b35a472188
+  sha256: fa26bca509750eb44e85cae2d78b03870c003d4f7e0360977e924a7838805e44
 
 build:
   noarch: generic
-  number: 1
+  number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage('r-aroma.core', max_pin="x") }}
 
 requirements:
   host:
@@ -54,10 +56,11 @@ test:
     - $R -e "library('aroma.core')"
 
 about:
-  home: https://github.com/HenrikBengtsson/aroma.core, http://www.aroma-project.org/
+  home: https://www.aroma-project.org/
   license: LGPL-2.1-or-later
   summary: Core methods and classes used by higher-level 'aroma.*' packages part of the Aroma
     Project, e.g. 'aroma.affymetrix' and 'aroma.cn'.
+  dev_url: https://github.com/HenrikBengtsson/aroma.core
   license_family: LGPL
   license_file:
     - '{{ environ["PREFIX"] }}/lib/R/share/licenses/LGPL-2.1'
diff --git a/recipes/r-azimuth/meta.yaml b/recipes/r-azimuth/meta.yaml
new file mode 100644
index 0000000000000..ece8b017733ac
--- /dev/null
+++ b/recipes/r-azimuth/meta.yaml
@@ -0,0 +1,100 @@
+{% set version = '0.5.0' %}
+
+package:
+  name: r-azimuth
+  version: {{ version|replace("-", "_") }}
+
+source:
+  url: https://github.com/satijalab/azimuth/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 0001e425d48a6f4ed71b99239d414285a09d06a138c393ad2227e186ef34c38f
+
+build:
+  script: $R CMD INSTALL --build .
+  run_exports:
+    - {{ pin_subpackage("r-azimuth", max_pin="x.x.x") }}
+  number: 0
+  rpaths:
+    - lib/R/lib/
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+  host:
+    - r-base
+    - 'bioconductor-bsgenome.hsapiens.ucsc.hg38 >=1.4.0,<1.5.0'
+    - 'r-dt >=0.15'
+    - 'bioconductor-ensdb.hsapiens.v86'
+    - 'r-matrix >=1.2.18'
+    - 'r-rcpp >=1.0.7'
+    - 'r-seurat >=5.0.0'
+    - 'r-seurat-data ==0.2.1'
+    - 'r-seurat-disk ==0.0.0.9021'
+    - 'r-seuratobject >=5.0.0'
+    - 'r-future >=1.19.1'
+    - 'r-ggplot2 >=3.3.2'
+    - 'bioconductor-glmgampoi >=1.0.0'
+    - 'r-googlesheets4 >=0.2.0'
+    - 'r-hdf5r >=1.3.2'
+    - 'r-htmltools >=0.5.0'
+    - 'r-httr >=1.4.2'
+    - 'bioconductor-jaspar2020'
+    - 'r-jsonlite >=1.7.0'
+    - 'r-patchwork >=1.0.1'
+    - 'r-plotly'
+    - 'r-presto ==1.0.0'
+    - 'r-rlang >=0.4.8'
+    - 'r-scales >=1.1.1'
+    - 'r-shiny >=1.5.0'
+    - 'r-shinybs >=0.61'
+    - 'r-shinydashboard >=0.7.1'
+    - 'r-shinyjs >=2.0.0'
+    - 'r-signac >=1.12.0'
+    - 'r-stringr >=1.4.0'
+    - 'bioconductor-tfbstools'
+    - 'r-withr >=2.3.0'
+  run:
+    - r-base
+    - 'r-dt >=0.15'
+    - 'bioconductor-ensdb.hsapiens.v86'
+    - 'r-matrix >=1.2.18'
+    - 'r-rcpp >=1.0.7'
+    - 'r-seurat >=5.0.0'
+    - 'r-seurat-data ==0.2.1'
+    - 'r-seurat-disk ==0.0.0.9021'
+    - 'r-seuratobject >=5.0.0'
+    - 'r-future >=1.19.1'
+    - 'r-ggplot2 >=3.3.2'
+    - 'bioconductor-glmgampoi >=1.0.0'
+    - 'r-googlesheets4 >=0.2.0'
+    - 'r-hdf5r >=1.3.2'
+    - 'r-htmltools >=0.5.0'
+    - 'r-httr >=1.4.2'
+    - 'bioconductor-jaspar2020'
+    - 'r-jsonlite >=1.7.0'
+    - 'r-patchwork >=1.0.1'
+    - 'r-plotly'
+    - 'r-presto ==1.0.0'
+    - 'r-rlang >=0.4.8'
+    - 'r-scales >=1.1.1'
+    - 'r-shiny >=1.5.0'
+    - 'r-shinybs >=0.61'
+    - 'r-shinydashboard >=0.7.1'
+    - 'r-shinyjs >=2.0.0'
+    - 'r-signac >=1.12.0'
+    - 'r-stringr >=1.4.0'
+    - 'bioconductor-tfbstools'
+    - 'r-withr >=2.3.0'
+
+test:
+  commands:
+    - '$R -e "library(''Azimuth'')"'
+
+about:
+  home: https://github.com/satijalab/azimuth
+  license: GPL-3.0-only
+  summary: Azimuth is a Shiny app demonstrating a query-reference mapping algorithm for single-cell data.
+  license_family: GPL3
+  license_file:
+    - '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+    - LICENSE
diff --git a/recipes/r-basejump/meta.yaml b/recipes/r-basejump/meta.yaml
index 731fe52af6b3b..6fe0a1493ed18 100644
--- a/recipes/r-basejump/meta.yaml
+++ b/recipes/r-basejump/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.17.0" %}
+{% set version = "0.18.0" %}
 {% set github = "https://github.com/acidgenomics/r-basejump" %}
 
 package:
@@ -7,48 +7,45 @@ package:
 
 source:
   url: "{{ github }}/archive/v{{ version }}.tar.gz"
-  sha256: 98a0c18f37fdcff995fd98020828a3ef91a5ca1314d5968b27793ddd2975203d
+  sha256: 06b216c539d112468172d021ba9445b8d98918609319fb34c200093fa052cbb9
 
 build:
   number: 1
   noarch: generic
-  rpaths:
-    - lib/R/lib/
-    - lib/
+  run_exports:
+    - {{ pin_subpackage('r-basejump', max_pin="x.x") }}
 
 requirements:
   host:
     # Depends:
     - r-base
     # Imports:
-    - bioconductor-singlecellexperiment
-    - bioconductor-summarizedexperiment
-    - r-acidbase
-    - r-acidexperiment
-    - r-acidgenomes
-    - r-acidmarkdown
-    - r-acidplots
-    - r-acidplyr
-    - r-acidsinglecell
-    - r-magrittr
-    - r-pipette
-    - r-syntactic
+    - bioconductor-singlecellexperiment >=1.22.0
+    - bioconductor-summarizedexperiment >=1.30.0
+    - r-acidbase >=0.7.0
+    - r-acidexperiment >=0.5.0
+    - r-acidgenomes >=0.6.0
+    - r-acidmarkdown >=0.3.0
+    - r-acidplots >=0.7.0
+    - r-acidplyr >=0.5.0
+    - r-acidsinglecell >=0.4.0
+    - r-pipette >=0.14.0
+    - r-syntactic >=0.7.0
   run:
     # Depends:
     - r-base
     # Imports:
-    - bioconductor-singlecellexperiment
-    - bioconductor-summarizedexperiment
-    - r-acidbase
-    - r-acidexperiment
-    - r-acidgenomes
-    - r-acidmarkdown
-    - r-acidplots
-    - r-acidplyr
-    - r-acidsinglecell
-    - r-magrittr
-    - r-pipette
-    - r-syntactic
+    - bioconductor-singlecellexperiment >=1.22.0
+    - bioconductor-summarizedexperiment >=1.30.0
+    - r-acidbase >=0.7.0
+    - r-acidexperiment >=0.5.0
+    - r-acidgenomes >=0.6.0
+    - r-acidmarkdown >=0.3.0
+    - r-acidplots >=0.7.0
+    - r-acidplyr >=0.5.0
+    - r-acidsinglecell >=0.4.0
+    - r-pipette >=0.14.0
+    - r-syntactic >=0.7.0
 
 test:
   commands:
diff --git a/recipes/r-bcbiobase/meta.yaml b/recipes/r-bcbiobase/meta.yaml
index c5a913a8fbcfa..2fbc32b4e4ad2 100644
--- a/recipes/r-bcbiobase/meta.yaml
+++ b/recipes/r-bcbiobase/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '0.8.1' %}
+{% set version = '0.9.0' %}
 {% set github = "https://github.com/hbc/bcbioBase" %}
 
 package:
@@ -7,42 +7,39 @@ package:
 
 source:
   url: "{{ github }}/archive/v{{ version }}.tar.gz"
-  sha256: 4364ccda28a9a6b4d6c50dd518bb8f088082a8f948279bad3cb084bd31fa22b6
+  sha256: f9c3e39f86e07d1af07838f95a0f1cae6f7c142bfb0e13ceb5dd2e16f2941cb2
 
 build:
   noarch: generic
-  number: 2
-  rpaths:
-    - lib/R/lib/
-    - lib/
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('r-bcbiobase', max_pin="x.x") }}
 
 requirements:
   host:
     # Depends:
     - r-base
     # Imports:
-    - bioconductor-s4vectors >=0.36.0
-    - r-acidbase >=0.6.8
-    - r-acidcli >=0.2.5
-    - r-acidexperiment >=0.4.4
-    - r-acidplyr >=0.3.2
-    - r-goalie >=0.6.6
-    - r-pipette >=0.10.1
-    - r-stringr >=1.4.1
-    - r-syntactic >=0.6.3
+    - bioconductor-s4vectors >=0.38.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.3.0
+    - r-acidexperiment >=0.5.0
+    - r-acidplyr >=0.5.0
+    - r-goalie >=0.7.1
+    - r-pipette >=0.14.0
+    - r-syntactic >=0.7.0
   run:
     # Depends:
     - r-base
     # Imports:
-    - bioconductor-s4vectors >=0.36.0
-    - r-acidbase >=0.6.8
-    - r-acidcli >=0.2.5
-    - r-acidexperiment >=0.4.4
-    - r-acidplyr >=0.3.2
-    - r-goalie >=0.6.6
-    - r-pipette >=0.10.1
-    - r-stringr >=1.4.1
-    - r-syntactic >=0.6.3
+    - bioconductor-s4vectors >=0.38.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.3.0
+    - r-acidexperiment >=0.5.0
+    - r-acidplyr >=0.5.0
+    - r-goalie >=0.7.1
+    - r-pipette >=0.14.0
+    - r-syntactic >=0.7.0
 
 test:
   commands:
diff --git a/recipes/r-bcbiornaseq/meta.yaml b/recipes/r-bcbiornaseq/meta.yaml
index ac056dc766a9e..5438c656df52d 100644
--- a/recipes/r-bcbiornaseq/meta.yaml
+++ b/recipes/r-bcbiornaseq/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.5.4" %}
+{% set version = "0.6.2" %}
 {% set github = "https://github.com/hbc/bcbioRNASeq" %}
 
 package:
@@ -7,110 +7,105 @@ package:
 
 source:
   url: "{{ github }}/archive/v{{ version }}.tar.gz"
-  sha256: ecd2d205a3337d0ad7cf77bcf5a119cef279a45a4818c924b90ab642a7e461c2
+  sha256: 01c7848a13e5eb5bb043725fbdcec2de9e545dd37c2995bcbbfde73a8632ede8
 
 build:
-  number: 2
+  number: 0
   noarch: generic
-  rpaths:
-    - lib/R/lib/
-    - lib/
+  run_exports:
+    - {{ pin_subpackage('r-bcbiornaseq', max_pin="x.x") }}
 
 requirements:
   host:
     # Depends:
     - r-base
-    - bioconductor-summarizedexperiment >=1.28.0
     # Imports:
-    - bioconductor-biocgenerics >=0.44.0
-    - bioconductor-deseq2 >=1.38.0
-    - bioconductor-edger >=3.40.0
-    - bioconductor-iranges >=2.32.0
-    - bioconductor-s4vectors >=0.36.0
-    - bioconductor-tximport >=1.26.0
-    - r-acidbase >=0.6.15
-    - r-acidcli >=0.2.7
-    - r-acidexperiment >=0.4.7
-    - r-acidgenerics >=0.6.7
-    - r-acidgenomes >=0.5.0
-    - r-acidplots >=0.5.5
-    - r-bcbiobase >=0.8.1
-    - r-ggplot2 >=3.4.2
-    - r-goalie >=0.6.8
-    - r-pipette >=0.10.9
-    - r-syntactic >=0.6.6
+    - bioconductor-biocgenerics >=0.46.0
+    - bioconductor-deseq2 >=1.40.0
+    - bioconductor-edger >=3.42.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - bioconductor-tximport >=1.28.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.3.0
+    - r-acidexperiment >=0.5.0
+    - r-acidgenerics >=0.7.2
+    - r-acidgenomes >=0.6.0
+    - r-acidplots >=0.7.1
+    - r-bcbiobase >=0.9.0
+    - r-ggplot2 >=3.4.3
+    - r-goalie >=0.7.1
+    - r-pipette >=0.14.0
+    - r-syntactic >=0.7.0
     # Suggests:
-    - bioconductor-biocstyle >=2.26.0
-    - bioconductor-clusterprofiler >=4.6.0
-    - bioconductor-degreport >=1.34.0
-    - bioconductor-dose >=3.24.0
-    - bioconductor-enrichplot >=1.18.0
+    - bioconductor-biocstyle >=2.28.0
+    - bioconductor-clusterprofiler >=4.8.0
+    - bioconductor-degreport >=1.36.0
+    - bioconductor-dose >=3.26.0
+    - bioconductor-enrichplot >=1.20.0
     - bioconductor-ensdb.hsapiens.v75 >=2.99.0
-    - bioconductor-genomeinfodb >=1.34.0
-    - bioconductor-org.hs.eg.db >=3.16.0
-    - bioconductor-org.mm.eg.db >=3.16.0
-    - bioconductor-pathview >=1.38.0
-    - bioconductor-rhdf5 >=2.42.0
-    - bioconductor-vsn >=3.66.0
-    - r-acidgsea >=0.8.8
-    - r-basejump >=0.16.5
-    - r-deseqanalysis >=0.6.8
-    - r-ggnewscale >=0.4.8
+    - bioconductor-genomeinfodb >=1.36.0
+    - bioconductor-org.hs.eg.db >=3.17.0
+    - bioconductor-org.mm.eg.db >=3.17.0
+    - bioconductor-pathview >=1.40.0
+    - bioconductor-rhdf5 >=2.44.0
+    - bioconductor-vsn >=3.68.0
+    - r-acidgsea >=0.9.0
+    - r-acidmarkdown >=0.3.0
+    - r-basejump >=0.18.0
+    - r-deseqanalysis >=0.7.0
+    - r-ggnewscale >=0.4.9
     - r-hexbin >=1.28.3
-    - r-knitr >=1.42
+    - r-knitr >=1.44
     - r-pheatmap >=1.0.12
-    - r-rmarkdown >=2.21
-    - r-r.utils >=2.12.2
-    - r-stringi >=1.7.12
-    - r-viridis >=0.6.2
-    - r-withr >=2.5.0
+    - r-rmarkdown >=2.25
+    - r-viridis >=0.6.4
+    - r-withr >=2.5.1
   run:
     # Depends:
     - r-base
-    - bioconductor-summarizedexperiment >=1.28.0
     # Imports:
-    - bioconductor-biocgenerics >=0.44.0
-    - bioconductor-deseq2 >=1.38.0
-    - bioconductor-edger >=3.40.0
-    - bioconductor-iranges >=2.32.0
-    - bioconductor-s4vectors >=0.36.0
-    - bioconductor-tximport >=1.26.0
-    - r-acidbase >=0.6.15
-    - r-acidcli >=0.2.7
-    - r-acidexperiment >=0.4.7
-    - r-acidgenerics >=0.6.7
-    - r-acidgenomes >=0.5.0
-    - r-acidplots >=0.5.5
-    - r-bcbiobase >=0.8.1
-    - r-ggplot2 >=3.4.2
-    - r-goalie >=0.6.8
-    - r-pipette >=0.10.9
-    - r-syntactic >=0.6.6
+    - bioconductor-biocgenerics >=0.46.0
+    - bioconductor-deseq2 >=1.40.0
+    - bioconductor-edger >=3.42.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - bioconductor-tximport >=1.28.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.3.0
+    - r-acidexperiment >=0.5.0
+    - r-acidgenerics >=0.7.2
+    - r-acidgenomes >=0.6.0
+    - r-acidplots >=0.7.1
+    - r-bcbiobase >=0.9.0
+    - r-ggplot2 >=3.4.3
+    - r-goalie >=0.7.1
+    - r-pipette >=0.14.0
+    - r-syntactic >=0.7.0
     # Suggests:
-    - bioconductor-biocstyle >=2.26.0
-    - bioconductor-clusterprofiler >=4.6.0
-    - bioconductor-degreport >=1.34.0
-    - bioconductor-dose >=3.24.0
-    - bioconductor-enrichplot >=1.18.0
+    - bioconductor-biocstyle >=2.28.0
+    - bioconductor-clusterprofiler >=4.8.0
+    - bioconductor-degreport >=1.36.0
+    - bioconductor-dose >=3.26.0
+    - bioconductor-enrichplot >=1.20.0
     - bioconductor-ensdb.hsapiens.v75 >=2.99.0
-    - bioconductor-genomeinfodb >=1.34.0
-    - bioconductor-org.hs.eg.db >=3.16.0
-    - bioconductor-org.mm.eg.db >=3.16.0
-    - bioconductor-pathview >=1.38.0
-    - bioconductor-rhdf5 >=2.42.0
-    - bioconductor-vsn >=3.66.0
-    - r-acidgsea >=0.8.8
-    - r-basejump >=0.16.5
-    - r-deseqanalysis >=0.6.8
-    - r-ggnewscale >=0.4.8
+    - bioconductor-genomeinfodb >=1.36.0
+    - bioconductor-org.hs.eg.db >=3.17.0
+    - bioconductor-org.mm.eg.db >=3.17.0
+    - bioconductor-pathview >=1.40.0
+    - bioconductor-rhdf5 >=2.44.0
+    - bioconductor-vsn >=3.68.0
+    - r-acidgsea >=0.9.0
+    - r-acidmarkdown >=0.3.0
+    - r-basejump >=0.18.0
+    - r-deseqanalysis >=0.7.0
+    - r-ggnewscale >=0.4.9
     - r-hexbin >=1.28.3
-    - r-knitr >=1.42
+    - r-knitr >=1.44
     - r-pheatmap >=1.0.12
-    - r-rmarkdown >=2.21
-    - r-r.utils >=2.12.2
-    - r-stringi >=1.7.12
-    - r-viridis >=0.6.2
-    - r-withr >=2.5.0
+    - r-rmarkdown >=2.25
+    - r-viridis >=0.6.4
+    - r-withr >=2.5.1
 
 test:
   commands:
diff --git a/recipes/r-bcbiosinglecell/meta.yaml b/recipes/r-bcbiosinglecell/meta.yaml
index a7740d4e53f68..f0d67d0cfeb51 100644
--- a/recipes/r-bcbiosinglecell/meta.yaml
+++ b/recipes/r-bcbiosinglecell/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.6.3" %}
+{% set version = "0.7.1" %}
 {% set github = "https://github.com/hbc/bcbioSingleCell" %}
 
 package:
@@ -7,76 +7,71 @@ package:
 
 source:
   url: "{{ github }}/archive/v{{ version }}.tar.gz"
-  sha256: b33c69257835391967fe23e30c8ef62bb5aab81cbe72598a5201b940ba656752
+  sha256: 42a7272709a65cda9b45b79aa172226839342578049a9841b73ee92a5e76e3f5
 
 build:
-  number: 2
+  number: 0
   noarch: generic
-  rpaths:
-    - lib/R/lib/
-    - lib/
+  run_exports:
+    - {{ pin_subpackage('r-bcbiosinglecell', max_pin="x.x") }}
 
 requirements:
   host:
     # Depends:
     - r-base
-    - bioconductor-singlecellexperiment >=1.18.0
     # Imports:
-    - bioconductor-biocgenerics >=0.42.0
-    - bioconductor-biocparallel >=1.30.0
-    - bioconductor-iranges >=2.30.0
-    - bioconductor-s4vectors >=0.34.0
-    - bioconductor-summarizedexperiment >=1.26.0
-    - r-acidbase >=0.6.8
-    - r-acidcli >=0.2.4
-    - r-acidexperiment >=0.4.4
-    - r-acidgenerics >=0.6.4
-    - r-acidgenomes >=0.4.4
-    - r-acidmarkdown >=0.2.4
-    - r-acidplots >=0.5.1
-    - r-acidplyr >=0.3.2
-    - r-acidsinglecell >=0.3.3
-    - r-bcbiobase >=0.8.1
-    - r-ggplot2 >=3.3.6
+    - bioconductor-biocgenerics >=0.46.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - bioconductor-singlecellexperiment >=1.22.0
+    - bioconductor-summarizedexperiment >=1.30.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.3.0
+    - r-acidexperiment >=0.5.0
+    - r-acidgenerics >=0.7.1
+    - r-acidgenomes >=0.6.0
+    - r-acidmarkdown >=0.3.0
+    - r-acidplots >=0.7.0
+    - r-acidplyr >=0.5.0
+    - r-acidsinglecell >=0.4.0
+    - r-bcbiobase >=0.9.0
+    - r-ggplot2 >=3.4.3
     - r-ggridges >=0.5.4
-    - r-goalie >=0.6.6
-    - r-pipette >=0.10.0
-    - r-stringi >=1.7.8
-    - r-syntactic >=0.6.3
+    - r-goalie >=0.7.1
+    - r-pipette >=0.14.0
+    - r-syntactic >=0.7.0
     # Suggests:
-    - bioconductor-biostrings >=2.64.0
-    - r-basejump >=0.16.0
-    - r-rmarkdown >=2.17
+    - bioconductor-biostrings >=2.68.0
+    - r-basejump >=0.18.0
+    - r-rmarkdown >=2.25
   run:
     # Depends:
     - r-base
-    - bioconductor-singlecellexperiment >=1.18.0
     # Imports:
-    - bioconductor-biocgenerics >=0.42.0
-    - bioconductor-biocparallel >=1.30.0
-    - bioconductor-iranges >=2.30.0
-    - bioconductor-s4vectors >=0.34.0
-    - bioconductor-summarizedexperiment >=1.26.0
-    - r-acidbase >=0.6.8
-    - r-acidcli >=0.2.4
-    - r-acidexperiment >=0.4.4
-    - r-acidgenerics >=0.6.4
-    - r-acidgenomes >=0.4.4
-    - r-acidmarkdown >=0.2.4
-    - r-acidplots >=0.5.1
-    - r-acidplyr >=0.3.2
-    - r-acidsinglecell >=0.3.3
-    - r-bcbiobase >=0.8.1
-    - r-ggplot2 >=3.3.6
+    - bioconductor-biocgenerics >=0.46.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - bioconductor-singlecellexperiment >=1.22.0
+    - bioconductor-summarizedexperiment >=1.30.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.3.0
+    - r-acidexperiment >=0.5.0
+    - r-acidgenerics >=0.7.1
+    - r-acidgenomes >=0.6.0
+    - r-acidmarkdown >=0.3.0
+    - r-acidplots >=0.7.0
+    - r-acidplyr >=0.5.0
+    - r-acidsinglecell >=0.4.0
+    - r-bcbiobase >=0.9.0
+    - r-ggplot2 >=3.4.3
     - r-ggridges >=0.5.4
-    - r-goalie >=0.6.6
-    - r-pipette >=0.10.0
-    - r-stringi >=1.7.8
-    - r-syntactic >=0.6.3
+    - r-goalie >=0.7.1
+    - r-pipette >=0.14.0
+    - r-syntactic >=0.7.0
     # Suggests:
-    - bioconductor-biostrings >=2.64.0
-    - r-basejump >=0.16.0
-    - r-rmarkdown >=2.17
+    - bioconductor-biostrings >=2.68.0
+    - r-basejump >=0.18.0
+    - r-rmarkdown >=2.25
 
 test:
   commands:
diff --git a/recipes/r-biomartr/meta.yaml b/recipes/r-biomartr/meta.yaml
index 2da9ca48024d0..a4fbd52da4fc5 100644
--- a/recipes/r-biomartr/meta.yaml
+++ b/recipes/r-biomartr/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '1.0.4' %}
+{% set version = '1.0.7' %}
 
 package:
   name: r-biomartr
@@ -8,7 +8,7 @@ source:
   url:
     - {{ cran_mirror }}/src/contrib/biomartr_{{ version }}.tar.gz
     - {{ cran_mirror }}/src/contrib/Archive/biomartr/biomartr_{{ version }}.tar.gz
-  sha256: 2008c202575344da527854b18748656744a137f4d5fd238f82a8d8cabcf96443
+  sha256: 9d1d5c51b61ee67ce7ca18afdb0a136ef5709d92d077d80163f9d52ee6c28645
 
 build:
   noarch: generic
@@ -16,6 +16,8 @@ build:
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage('r-biomartr', max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/r-cellosaurus/meta.yaml b/recipes/r-cellosaurus/meta.yaml
index 297d0ccd1b7f4..303e14d510275 100644
--- a/recipes/r-cellosaurus/meta.yaml
+++ b/recipes/r-cellosaurus/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.5.4" %}
+{% set version = "0.8.2" %}
 {% set github = "https://github.com/acidgenomics/r-cellosaurus" %}
 
 package:
@@ -7,47 +7,43 @@ package:
 
 source:
   url: "{{ github }}/archive/v{{ version }}.tar.gz"
-  sha256: 51a2895971a70e6d4eddf1db40e0d1641ac7a9c88036b8c34171014241e1fda2
+  sha256: 83d730b19dfe21ca7447d8eaf674b991010300918bb17dad70f25458617b33a3
 
 build:
   noarch: generic
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('r-cellosaurus', max_pin="x.x") }}
 
 requirements:
   host:
     # Depends:
     - r-base
     # Imports:
-    - bioconductor-biocgenerics >=0.44.0
-    - bioconductor-iranges >=2.32.0
-    - bioconductor-s4vectors >=0.36.0
-    - r-acidbase >=0.6.16
-    - r-acidcli >=0.2.7
-    - r-acidgenerics >=0.6.7
-    - r-acidplyr >=0.3.10
-    - r-goalie >=0.6.9
-    - r-pipette >=0.10.9
-    - r-stringi >=1.7.12
-    - r-syntactic >=0.6.6
-    # Suggests:
-    - r-data.table >=1.14.8
+    - bioconductor-biocgenerics >=0.46.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.3.0
+    - r-acidgenerics >=0.7.1
+    - r-acidplyr >=0.4.2
+    - r-goalie >=0.7.1
+    - r-pipette >=0.14.0
+    - r-syntactic >=0.7.0
   run:
     # Depends:
     - r-base
     # Imports:
-    - bioconductor-biocgenerics >=0.44.0
-    - bioconductor-iranges >=2.32.0
-    - bioconductor-s4vectors >=0.36.0
-    - r-acidbase >=0.6.16
-    - r-acidcli >=0.2.7
-    - r-acidgenerics >=0.6.7
-    - r-acidplyr >=0.3.10
-    - r-goalie >=0.6.9
-    - r-pipette >=0.10.9
-    - r-stringi >=1.7.12
-    - r-syntactic >=0.6.6
-    # Suggests:
-    - r-data.table >=1.14.8
+    - bioconductor-biocgenerics >=0.46.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.3.0
+    - r-acidgenerics >=0.7.1
+    - r-acidplyr >=0.4.2
+    - r-goalie >=0.7.1
+    - r-pipette >=0.14.0
+    - r-syntactic >=0.7.0
 
 test:
   commands:
diff --git a/recipes/r-chord/build.sh b/recipes/r-chord/build.sh
new file mode 100644
index 0000000000000..af6547bf3c22e
--- /dev/null
+++ b/recipes/r-chord/build.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+$R CMD INSTALL --build .
diff --git a/recipes/r-chord/meta.yaml b/recipes/r-chord/meta.yaml
new file mode 100644
index 0000000000000..112ef12290bf6
--- /dev/null
+++ b/recipes/r-chord/meta.yaml
@@ -0,0 +1,42 @@
+{% set version = "2.03" %}
+{% set sha256 = "def578e8e3764231d0711d0fb2542862c064fe9e355fbc6c5b61da153f50e7bc" %}
+
+package:
+  name: r-chord
+  version: '{{ version }}'
+
+source:
+  url: https://github.com/UMCUGenetics/CHORD/archive/refs/tags/{{ version }}.tar.gz
+  sha256: '{{ sha256 }}'
+
+build:
+  noarch: generic
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("r-chord", max_pin="x.x") }}
+
+requirements:
+  host:
+    - r-base
+    - r-mutsigextractor ==1.14
+    - r-randomforest
+    - bioconductor-bsgenome
+    - bioconductor-bsgenome.hsapiens.ucsc.hg19
+    - bioconductor-bsgenome.hsapiens.ucsc.hg38
+  run:
+    - r-base
+    - r-mutsigextractor ==1.14
+    - r-randomforest
+    - bioconductor-bsgenome
+    - bioconductor-bsgenome.hsapiens.ucsc.hg19
+    - bioconductor-bsgenome.hsapiens.ucsc.hg38
+
+test:
+  commands:
+    - $R -e "library('CHORD')"
+
+about:
+  home: https://github.com/UMCUGenetics/CHORD
+  license: GPL-3.0-only
+  license_family: GPL3
+  summary: Predict HRD using somatic mutations contexts
diff --git a/recipes/r-chromium/meta.yaml b/recipes/r-chromium/meta.yaml
index 69ff59c5adfba..0c8141d3d61c6 100644
--- a/recipes/r-chromium/meta.yaml
+++ b/recipes/r-chromium/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.2.1" %}
+{% set version = "0.3.0" %}
 {% set github = "https://github.com/acidgenomics/r-chromium" %}
 
 package:
@@ -7,53 +7,53 @@ package:
 
 source:
   url: "{{ github }}/archive/v{{ version }}.tar.gz"
-  sha256: ece585f9516dc760c35bea9720bcab9feff920121f0440dc5d546305bbe6c048
+  sha256: e2f58a6141ce55b73d631323360d86d3713bf7870476c2505f457c61f41a3d0b
 
 build:
   number: 1
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('r-chromium', max_pin="x.x") }}
 
 requirements:
   host:
     # Depends:
     - r-base
     # Imports:
-    - bioconductor-rhdf5 >=2.42.0
-    - bioconductor-s4vectors >=0.36.0
-    - bioconductor-singlecellexperiment >=1.20.0
-    - bioconductor-summarizedexperiment >=1.28.0
-    - r-acidbase >=0.6.12
-    - r-acidcli >=0.2.7
-    - r-acidexperiment >=0.4.5
-    - r-acidgenerics >=0.6.6
-    - r-acidgenomes >=0.4.7
-    - r-acidplyr >=0.3.6
-    - r-acidsinglecell >=0.3.4
-    - r-goalie >=0.6.8
-    - r-matrix >=1.5.1
-    - r-pipette >=0.10.3
-    - r-stringi >=1.7.12
-    - r-syntactic >=0.6.4
+    - bioconductor-rhdf5 >=2.44.0
+    - bioconductor-s4vectors >=0.38.0
+    - bioconductor-singlecellexperiment >=1.22.0
+    - bioconductor-summarizedexperiment >=1.30.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.2.8
+    - r-acidexperiment >=0.5.0
+    - r-acidgenerics >=0.6.13
+    - r-acidgenomes >=0.6.0
+    - r-acidplyr >=0.4.3
+    - r-acidsinglecell >=0.3.7
+    - r-goalie >=0.7.0
+    - r-matrix >=1.6.1
+    - r-pipette >=0.14.0
+    - r-syntactic >=0.6.7
   run:
     # Depends:
     - r-base
     # Imports:
-    - bioconductor-rhdf5 >=2.42.0
-    - bioconductor-s4vectors >=0.36.0
-    - bioconductor-singlecellexperiment >=1.20.0
-    - bioconductor-summarizedexperiment >=1.28.0
-    - r-acidbase >=0.6.12
-    - r-acidcli >=0.2.7
-    - r-acidexperiment >=0.4.5
-    - r-acidgenerics >=0.6.6
-    - r-acidgenomes >=0.4.7
-    - r-acidplyr >=0.3.6
-    - r-acidsinglecell >=0.3.4
-    - r-goalie >=0.6.8
-    - r-matrix >=1.5.1
-    - r-pipette >=0.10.3
-    - r-stringi >=1.7.12
-    - r-syntactic >=0.6.4
+    - bioconductor-rhdf5 >=2.44.0
+    - bioconductor-s4vectors >=0.38.0
+    - bioconductor-singlecellexperiment >=1.22.0
+    - bioconductor-summarizedexperiment >=1.30.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.2.8
+    - r-acidexperiment >=0.5.0
+    - r-acidgenerics >=0.6.13
+    - r-acidgenomes >=0.6.0
+    - r-acidplyr >=0.4.3
+    - r-acidsinglecell >=0.3.7
+    - r-goalie >=0.7.0
+    - r-matrix >=1.6.1
+    - r-pipette >=0.14.0
+    - r-syntactic >=0.6.7
 
 test:
   commands:
diff --git a/recipes/r-classdiscovery/meta.yaml b/recipes/r-classdiscovery/meta.yaml
index 4993bba3a183f..031a2df080c26 100644
--- a/recipes/r-classdiscovery/meta.yaml
+++ b/recipes/r-classdiscovery/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '3.4.0' %}
+{% set version = '3.4.5' %}
 
 package:
   name: r-classdiscovery
@@ -8,16 +8,17 @@ source:
   url:
     - {{ cran_mirror }}/src/contrib/ClassDiscovery_{{ version }}.tar.gz
     - {{ cran_mirror }}/src/contrib/Archive/ClassDiscovery/ClassDiscovery_{{ version }}.tar.gz
-  sha256: 5a18e607ba5753bb8026a27ff73df6ad9f77ff186a82050b90d1fac6ee96871a
+  sha256: 61bcee1d18cb213f4fbe4ca5f6e3051192823a9e919c4010efd5f74aedd1e04c
 
 build:
   noarch: generic
-  number: 2
+  number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage("r-classdiscovery", max_pin="x") }}
 
-# Suggests: xtable
 requirements:
   host:
     - r-base
@@ -36,39 +37,12 @@ requirements:
 
 test:
   commands:
-    # You can put additional test commands to be run here.
-    - $R -e "library('ClassDiscovery')"           # [not win]
-    - "\"%R%\" -e \"library('ClassDiscovery')\""  # [win]
+    - $R -e "library('ClassDiscovery')"
 
 about:
   home: http://oompa.r-forge.r-project.org/
-  license: Apache (== 2.0)
+  license: Apache-2.0
   summary: 'Defines the classes used for "class discovery" problems in the OOMPA project (<http://oompa.r-forge.r-project.org/>).
     Class discovery primarily consists of unsupervised clustering methods with attempts
     to assess their statistical significance. '
   license_family: APACHE
-
-# The original CRAN metadata for this package was:
-
-# Package: ClassDiscovery
-# Version: 3.3.9
-# Date: 2018-09-27
-# Title: Classes and Methods for "Class Discovery" with Microarrays or Proteomics
-# Author: Kevin R. Coombes
-# Maintainer: Kevin R. Coombes <krc@silicovore.com>
-# Depends: R (>= 3.0), cluster, oompaBase (>= 3.0.1)
-# Imports: methods, stats, graphics, grDevices, mclust, oompaData, Biobase
-# Suggests: xtable
-# Description: Defines the classes used for "class discovery" problems in the OOMPA project (<http://oompa.r-forge.r-project.org/>). Class discovery primarily consists of unsupervised clustering methods with attempts to assess their statistical significance.
-# License: Apache License (== 2.0)
-# LazyLoad: yes
-# biocViews: Microarray, Clustering
-# URL: http://oompa.r-forge.r-project.org/
-# NeedsCompilation: no
-# Packaged: 2018-10-03 11:25:11 UTC; Kevin
-# Repository: CRAN
-# Date/Publication: 2018-10-03 22:02:55 UTC
-
-# See
-# http://docs.continuum.io/conda/build.html for
-# more information about meta.yaml
diff --git a/recipes/r-codedepends/meta.yaml b/recipes/r-codedepends/meta.yaml
index f19f17e98709a..321e8713df784 100644
--- a/recipes/r-codedepends/meta.yaml
+++ b/recipes/r-codedepends/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '0.6.5' %}
+{% set version = '0.6.6' %}
 {% set posix = 'm2-' if win else '' %}
 {% set native = 'm2w64-' if win else '' %}
 
@@ -10,15 +10,17 @@ source:
   url:
     - {{ cran_mirror }}/src/contrib/CodeDepends_{{ version }}.tar.gz
     - {{ cran_mirror }}/src/contrib/Archive/CodeDepends/CodeDepends_{{ version }}.tar.gz
-  sha256: 18067d49d67c3f8f0cca1f3890680dcee9ffc90a0469561c7da074aec68ef350
+  sha256: 7f815b03abe573b95ac9ed2e20caa7c5b5370aff710767e897575c2cf52c5857
 
 build:
   merge_build_host: True  # [win]
-  number: 4
+  number: 0
   noarch: generic
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage('r-codedepends', max_pin="x.x") }}
 
 requirements:
   build:
diff --git a/recipes/r-conos/meta.yaml b/recipes/r-conos/meta.yaml
index 78c4f6043b388..764a6f992dd1a 100644
--- a/recipes/r-conos/meta.yaml
+++ b/recipes/r-conos/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '1.5.0' %}
+{% set version = '1.5.2' %}
 
 package:
   name: r-conos
@@ -8,13 +8,15 @@ source:
   url:
     - {{ cran_mirror }}/src/contrib/conos_{{ version }}.tar.gz
     - {{ cran_mirror }}/src/contrib/Archive/conos/conos_{{ version }}.tar.gz
-  sha256: dcf4afbbf3c744e8e4f1bd4472bb4c8f18a1d18d9f2bf854372d12d8e558b0f1
+  sha256: 736a00a2574fd39d063d70038ae1ff738cfcb6de61827aaf765f7004c67ac65c
 
 build:
-  number: 3
+  number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage('r-conos', max_pin="x") }}
 
 requirements:
   build:
diff --git a/recipes/r-corncob/meta.yaml b/recipes/r-corncob/meta.yaml
index 7eebe8657a71c..59804c6fc189d 100644
--- a/recipes/r-corncob/meta.yaml
+++ b/recipes/r-corncob/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '0.3.1' %}
+{% set version = '0.4.1' %}
 {% set posix = 'm2-' if win else '' %}
 {% set native = 'm2w64-' if win else '' %}
 
@@ -10,15 +10,17 @@ source:
   url:
     - {{ cran_mirror }}/src/contrib/corncob_{{ version }}.tar.gz
     - {{ cran_mirror }}/src/contrib/Archive/corncob/corncob_{{ version }}.tar.gz
-  sha256: 4870d93c96c7b18f06672d114c617a03c2f86db3448354a4e055a3d626e23178
+  sha256: 9658ee516843ed7e229e24e77df3f7c0e361c428f1700818209c21e3d24f5089
 
 build:
   merge_build_host: True  # [win]
-  number: 2
+  number: 0
   noarch: generic
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage('r-corncob', max_pin='x.x') }}
 
 requirements:
   build:
@@ -32,8 +34,7 @@ requirements:
     - r-ggplot2
     - r-magrittr
     - r-numderiv
-    - r-optimr
-    - bioconductor-phyloseq
+    - r-rlang
     - r-scales
     - r-trust
   run:
@@ -44,8 +45,7 @@ requirements:
     - r-ggplot2
     - r-magrittr
     - r-numderiv
-    - r-optimr
-    - bioconductor-phyloseq
+    - r-rlang
     - r-scales
     - r-trust
 
diff --git a/recipes/r-crbhits/meta.yaml b/recipes/r-crbhits/meta.yaml
index 4afc84a3c4e5e..290bc8fe95bf1 100644
--- a/recipes/r-crbhits/meta.yaml
+++ b/recipes/r-crbhits/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "r-crbhits" %}
-{% set version = "0.0.4" %}
+{% set version = "0.0.5" %}
 
 package:
   name: "{{ name }}"
@@ -7,22 +7,21 @@ package:
 
 source:
   url: https://github.com/kullrich/CRBHits/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: a44ae1f6f16bf321adf9a0342e3f577ea8322e0f49e507908254f2229c55cc00
+  sha256: 2b16cebb11acb1460c7c99c3455f7570cd2b1e485e986bb02a609a956849a43f
 
 build:
-  number: 1
+  number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage('r-crbhits', max_pin="x.x") }}
 
 requirements:
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
     - make
-    - last
-    - kakscalculator2
-    - dagchainer
   host:
     - r-base
     - bioconductor-biostrings
@@ -45,6 +44,9 @@ requirements:
     - r-stringi
     - r-testthat
     - r-tibble
+    - last
+    - kakscalculator2
+    - dagchainer
   run:
     - r-base
     - bioconductor-biostrings
@@ -52,7 +54,7 @@ requirements:
     - r-curl
     - r-doParallel
     - r-dplyr
-    - r-foreach 
+    - r-foreach
     - r-ggplot2
     - r-gridExtra
     - r-readr
@@ -79,6 +81,7 @@ about:
   summary: "CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R."
   description: "CRBHits is a reimplementation of the Conditional Reciprocal Best Hit (CRBH) algorithm crb-blast in R. It covers all necessary steps from CRBHit pair calculation to Codon Alignments and Ka/Ks. (see [Ullrich (2020) <https://doi.org/10.21105/joss.02424>])"
   license_family: MIT
+
 extra:
   identifiers:
     - doi:10.21105/joss.02424
diff --git a/recipes/r-deconcell/build.sh b/recipes/r-deconcell/build.sh
new file mode 100644
index 0000000000000..6d23e7f876394
--- /dev/null
+++ b/recipes/r-deconcell/build.sh
@@ -0,0 +1,4 @@
+#!/bin/bash
+
+pushd Decon2/DeconCell
+$R CMD INSTALL --build .
diff --git a/recipes/r-deconcell/meta.yaml b/recipes/r-deconcell/meta.yaml
new file mode 100644
index 0000000000000..211669e1ffeda
--- /dev/null
+++ b/recipes/r-deconcell/meta.yaml
@@ -0,0 +1,53 @@
+{% set name = "r-deconcell" %}
+{% set version = "0.1.0" %}
+{% set vcommit = "335bf320df9c7dd15f636cff2c089d89ba6b786e" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/molgenis/systemsgenetics/archive/{{ vcommit }}.tar.gz
+  sha256: 9dadbe65cdbe72ca6f7bb6869770f40dc4fcea45945fbfb76ace61e41feb5b14
+
+
+build:
+  number: 0
+  noarch: generic
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports:
+    - {{ pin_subpackage('r-deconcell', max_pin="x") }}
+
+requirements:
+  host:
+    - bioconductor-deconrnaseq
+    - bioconductor-edger
+    - r-base
+    - r-data.table
+    - r-devtools
+    - r-glmnet
+  run:
+    - bioconductor-deconrnaseq
+    - bioconductor-edger
+    - r-base
+    - r-data.table
+    - r-glmnet
+
+test:
+  commands:
+    - $R -e "library(\"DeconCell\")"
+
+about:
+  home: https://github.com/molgenis/systemsgenetics/tree/master/Decon2/DeconCell
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  summary: DeconCell is an statitsical framework for generating cell proportions predictive models using bulk expresion data. It currently has pre-calculated models
+  description: |
+    DeconCell is an statitsical framework for generating cell proportions predictive models using bulk expresion data. It currently has pre-calculated models
+  dev_url: https://github.com/molgenis/systemsgenetics/tree/master/Decon2/DeconCell
+
+extra:
+  recipe-maintainers:
+    - pettyalex
diff --git a/recipes/r-deseqanalysis/meta.yaml b/recipes/r-deseqanalysis/meta.yaml
index d44c668b509f6..c946b43612c5b 100644
--- a/recipes/r-deseqanalysis/meta.yaml
+++ b/recipes/r-deseqanalysis/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.6.11" %}
+{% set version = "0.7.1" %}
 {% set github = "https://github.com/acidgenomics/r-deseqanalysis" %}
 
 package:
@@ -7,71 +7,77 @@ package:
 
 source:
   url: "{{ github }}/archive/v{{ version }}.tar.gz"
-  sha256: 85c812369d3eb23e966d4fb33e921bc5a52321c32e0f964fcfba32fb39a275c7
+  sha256: b5e77ddd1d2109069c6ad5ed01f073c904e5cf164c1c5a418853c554263b0e97
 
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('r-deseqanalysis', max_pin="x.x") }}
 
 requirements:
   host:
     # Depends:
     - r-base
-    - bioconductor-deseq2 >=1.40.0
     # Imports:
     - bioconductor-biocgenerics >=0.46.0
-    - bioconductor-iranges >=2.32.0
-    - bioconductor-s4vectors >=0.36.0
-    - bioconductor-summarizedexperiment >=1.28.0
-    - r-acidbase >=0.6.15
-    - r-acidcli >=0.2.7
-    - r-acidexperiment >=0.4.7
-    - r-acidgenerics >=0.6.7
-    - r-acidgenomes >=0.5.0
-    - r-acidmarkdown >=0.2.5
-    - r-acidplots >=0.5.5
-    - r-acidplyr >=0.3.10
-    - r-ggplot2 >=3.4.2
-    - r-goalie >=0.6.9
-    - r-pipette >=0.10.9
-    - r-stringi >=1.7.12
-    - r-syntactic >=0.6.5
+    - bioconductor-deseq2 >=1.40.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - bioconductor-summarizedexperiment >=1.30.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.2.8
+    - r-acidexperiment >=0.4.8
+    - r-acidgenerics >=0.6.13
+    - r-acidgenomes >=0.5.2
+    - r-acidmarkdown >=0.2.6
+    - r-acidplots >=0.6.2
+    - r-acidplyr >=0.4.2
+    - r-ggplot2 >=3.4.3
+    - r-goalie >=0.6.19
+    - r-pipette >=0.14.0
+    - r-syntactic >=0.6.7
     # Suggests:
-    - bioconductor-apeglm >=1.20.0
-    - bioconductor-tximport >=1.26.0
-    - r-ashr >=2.2.54
-    - r-basejump >=0.16.5
-    - r-knitr >=1.42
-    - r-rmarkdown >=2.21
+    - bioconductor-apeglm >=1.22.0
+    - bioconductor-tximport >=1.28.0
+    - r-ashr >=2.2.63
+    - r-basejump >=0.17.0
+    - r-complexupset >=1.3.3
+    - r-ggrepel >=0.9.3
+    - r-knitr >=1.44
+    - r-pheatmap >=1.0.12
+    - r-rmarkdown >=2.25
   run:
     # Depends:
     - r-base
-    - bioconductor-deseq2 >=1.40.0
     # Imports:
     - bioconductor-biocgenerics >=0.46.0
-    - bioconductor-iranges >=2.32.0
-    - bioconductor-s4vectors >=0.36.0
-    - bioconductor-summarizedexperiment >=1.28.0
-    - r-acidbase >=0.6.15
-    - r-acidcli >=0.2.7
-    - r-acidexperiment >=0.4.7
-    - r-acidgenerics >=0.6.7
-    - r-acidgenomes >=0.5.0
-    - r-acidmarkdown >=0.2.5
-    - r-acidplots >=0.5.5
-    - r-acidplyr >=0.3.10
-    - r-ggplot2 >=3.4.2
-    - r-goalie >=0.6.9
-    - r-pipette >=0.10.9
-    - r-stringi >=1.7.12
-    - r-syntactic >=0.6.5
+    - bioconductor-deseq2 >=1.40.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - bioconductor-summarizedexperiment >=1.30.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.2.8
+    - r-acidexperiment >=0.4.8
+    - r-acidgenerics >=0.6.13
+    - r-acidgenomes >=0.5.2
+    - r-acidmarkdown >=0.2.6
+    - r-acidplots >=0.6.2
+    - r-acidplyr >=0.4.2
+    - r-ggplot2 >=3.4.3
+    - r-goalie >=0.6.19
+    - r-pipette >=0.14.0
+    - r-syntactic >=0.6.7
     # Suggests:
-    - bioconductor-apeglm >=1.20.0
-    - bioconductor-tximport >=1.26.0
-    - r-ashr >=2.2.54
-    - r-basejump >=0.16.5
-    - r-knitr >=1.42
-    - r-rmarkdown >=2.21
+    - bioconductor-apeglm >=1.22.0
+    - bioconductor-tximport >=1.28.0
+    - r-ashr >=2.2.63
+    - r-basejump >=0.17.0
+    - r-complexupset >=1.3.3
+    - r-ggrepel >=0.9.3
+    - r-knitr >=1.44
+    - r-pheatmap >=1.0.12
+    - r-rmarkdown >=2.25
 
 test:
   commands:
diff --git a/recipes/r-diffcorr/meta.yaml b/recipes/r-diffcorr/meta.yaml
index 9412e5e6afd0c..75a7764de28b5 100644
--- a/recipes/r-diffcorr/meta.yaml
+++ b/recipes/r-diffcorr/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '0.4.2' %}
+{% set version = '0.4.3' %}
 
 package:
   name: r-diffcorr
@@ -8,14 +8,16 @@ source:
   url:
     - {{ cran_mirror }}/src/contrib/DiffCorr_{{ version }}.tar.gz
     - {{ cran_mirror }}/src/contrib/Archive/DiffCorr/DiffCorr_{{ version }}.tar.gz
-  sha256: 39d652b207468d8813a1f0c06d9d882662639d3cac8d49d40d794985fda6fa60
+  sha256: b0d811cbd78eb69484fb184522cc358d9ad56235b85ee56bef22fc3c1d2df3f3
 
 build:
-  number: 2
+  number: 0
   noarch: generic
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage("r-diffcorr", max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/r-dimsum/meta.yaml b/recipes/r-dimsum/meta.yaml
index 561f9c65df523..e31cf6dc73e8e 100644
--- a/recipes/r-dimsum/meta.yaml
+++ b/recipes/r-dimsum/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '1.3' %}
+{% set version = '1.3.1' %}
 {% set github = "https://github.com/lehner-lab/DiMSum" %}
 
 package:
@@ -7,22 +7,24 @@ package:
 
 source:
   url: "{{ github }}/archive/v{{ version }}.tar.gz"
-  sha256: 5f4181a8f4790f7a995db3f1d19408ebeb0fe00ed0cf520d28b1e37dc53a01ea 
+  sha256: 068b490a8a38601298ea98f32b1e81ba98ecfaa8102e312d8c419d8ef7d3c9de 
 
 build:
-  number: 2
+  number: 0
   noarch: generic
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage('r-dimsum', max_pin="x") }}
 
 requirements:
   build:
     - r-base
   host:
-    - r-base
+    - r-base =4.0
     - pandoc >=1.17.2
-    - fastqc >=0.11.3
+    - fastqc =0.11
     - cutadapt =2.4
     - vsearch >=2.17
     - starcode >=1.3
@@ -43,9 +45,9 @@ requirements:
     - r-seqinr
     - r-stringr
   run:
-    - r-base
+    - r-base =4.0
     - pandoc >=1.17.2
-    - fastqc >=0.11.3
+    - fastqc =0.11
     - cutadapt =2.4
     - vsearch  >=2.17
     - starcode >=1.3
diff --git a/recipes/r-dsb/build.sh b/recipes/r-dsb/build.sh
new file mode 100644
index 0000000000000..df943f40e3e3d
--- /dev/null
+++ b/recipes/r-dsb/build.sh
@@ -0,0 +1,22 @@
+#!/bin/bash
+
+# 'Autobrew' is being used by more and more packages these days
+# to grab static libraries from Homebrew bottles. These bottles
+# are fetched via Homebrew's --force-bottle option which grabs
+# a bottle for the build machine which may not be macOS 10.9.
+# Also, we want to use conda packages (and shared libraries) for
+# these 'system' dependencies. See:
+# https://github.com/jeroen/autobrew/issues/3
+export DISABLE_AUTOBREW=1
+
+# R refuses to build packages that mark themselves as Priority: Recommended
+mv DESCRIPTION DESCRIPTION.old
+grep -va '^Priority: ' DESCRIPTION.old > DESCRIPTION
+# shellcheck disable=SC2086
+${R} CMD INSTALL --build . ${R_ARGS}
+
+# Add more build steps here, if they are necessary.
+
+# See
+# https://docs.conda.io/projects/conda-build
+# for a list of environment variables that are set during the build process.
diff --git a/recipes/r-dsb/meta.yaml b/recipes/r-dsb/meta.yaml
new file mode 100644
index 0000000000000..953d980c21491
--- /dev/null
+++ b/recipes/r-dsb/meta.yaml
@@ -0,0 +1,110 @@
+{% set version = '1.0.3' %}
+
+{% set posix = 'm2-' if win else '' %}
+{% set native = 'm2w64-' if win else '' %}
+
+package:
+  name: r-dsb
+  version: {{ version|replace("-", "_") }}
+
+source:
+  url:
+    - {{ cran_mirror }}/src/contrib/dsb_{{ version }}.tar.gz
+    - {{ cran_mirror }}/src/contrib/Archive/dsb/dsb_{{ version }}.tar.gz
+  sha256: 6287a25d1f67f5a5dfc8af5558e884c59d7ea7fea49a9c08c53b30023069f0f7
+
+build:
+  merge_build_host: True  # [win]
+  # If this is a new build for the same version, increment the build number.
+  number: 0
+  # no skip
+  noarch: generic
+  # This is required to make R link correctly on Linux.
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports:
+    - {{ pin_subpackage('r-dsb', max_pin="x") }}
+
+# Suggests: testthat, knitr, rmarkdown, ggplot2, cowplot, spelling
+requirements:
+  build:
+    - {{ posix }}zip               # [win]
+
+  host:
+    - r-base
+    - bioconductor-limma
+    - r-magrittr
+    - r-mclust
+
+  run:
+    - r-base
+    - bioconductor-limma
+    - r-magrittr
+    - r-mclust
+
+test:
+  commands:
+    # You can put additional test commands to be run here.
+    - $R -e "library('dsb')"           # [not win]
+    - "\"%R%\" -e \"library('dsb')\""  # [win]
+
+  # You can also put a file called run_test.py, run_test.sh, or run_test.bat
+  # in the recipe that will be run at test time.
+
+  # requires:
+    # Put any additional test requirements here.
+
+about:
+  home: https://github.com/niaid/dsb
+  license: CC0 | file LICENSE
+  summary: "Normalizing and denoising protein expression data from droplet-based single cell profiling"
+  description: "This lightweight R package provides a method for normalizing and denoising protein
+    expression data from droplet based single cell experiments. Raw protein Unique Molecular
+    Index (UMI) counts from sequencing DNA-conjugated antibody derived tags (ADT) in
+    droplets (e.g. 'CITE-seq') have substantial measurement noise. Our experiments and
+    computational modeling revealed two major components of this noise: 1) protein-specific
+    noise originating from ambient, unbound antibody encapsulated in droplets that can
+    be accurately inferred via the expected protein counts detected in empty droplets,
+    and 2) droplet/cell-specific noise revealed via the shared variance component associated
+    with isotype antibody controls and background protein counts in each cell. This
+    package normalizes and removes both of these sources of noise from raw protein data
+    derived from methods such as 'CITE-seq', 'REAP-seq', 'ASAP-seq', 'TEA-seq', 'proteogenomic'
+    data from the Mission Bio platform, etc. See the vignette for tutorials on how to
+    integrate dsb with 'Seurat' and 'Bioconductor' and how to use dsb in 'Python'. Please
+    see our paper Mul\xE8 M.P., Martins A.J., and Tsang J.S. Nature Communications 2022
+    <https://www.nature.com/articles/s41467-022-29356-8> for more details on the method."  
+  license_family: CC
+  license_file:
+    - LICENSE
+
+# The original CRAN metadata for this package was:
+
+# Package: dsb
+# Type: Package
+# Title: Normalize & Denoise Droplet Single Cell Protein Data (CITE-Seq)
+# Version: 1.0.3
+# Authors@R: c(person(given = "Matthew", family = "Mule", role = c("aut", "cre"), email = "mattmule@gmail.com", comment = c(ORCID = "0000-0001-8457-2716")), person(given = "Andrew", family = "Martins", role = "aut", email = "andrew.martins@nih.gov", comment = c(ORCID = "0000-0002-1832-1924")), person(given = "John", family = "Tsang", role = "pdr", email = "john.tsang@nih.gov", comment = c(ORCID = "0000-0003-3186-3047")))
+# Description: This lightweight R package provides a method for normalizing and denoising protein expression data from droplet based single cell experiments. Raw protein Unique Molecular Index (UMI) counts from sequencing DNA-conjugated antibody derived tags (ADT) in droplets (e.g. 'CITE-seq') have substantial measurement noise. Our experiments and computational modeling revealed two major components of this noise: 1) protein-specific noise originating from ambient, unbound antibody encapsulated in droplets that can be accurately inferred via the expected protein counts detected in empty droplets, and 2) droplet/cell-specific noise revealed via the shared variance component associated with isotype antibody controls and background protein counts in each cell. This package normalizes and removes both of these sources of noise from raw protein data derived from methods such as 'CITE-seq', 'REAP-seq', 'ASAP-seq', 'TEA-seq', 'proteogenomic' data from the Mission Bio platform, etc. See the vignette for tutorials on how to integrate dsb with 'Seurat' and 'Bioconductor' and how to use dsb in 'Python'. Please see our paper Mule M.P., Martins A.J., and Tsang J.S. Nature Communications 2022 <https://www.nature.com/articles/s41467-022-29356-8> for more details on the method.
+# License: CC0 | file LICENSE
+# Encoding: UTF-8
+# LazyData: true
+# RoxygenNote: 7.1.1
+# Depends: R (>= 2.10)
+# biocViews:
+# Imports: magrittr, limma, mclust, stats
+# Suggests: testthat, knitr, rmarkdown, ggplot2, cowplot, spelling
+# URL: https://github.com/niaid/dsb
+# BugReports: https://github.com/niaid/dsb/issues
+# VignetteBuilder: knitr, rmarkdown
+# Language: en-US
+# NeedsCompilation: no
+# Packaged: 2023-03-17 16:55:52 UTC; matthewmule
+# Author: Matthew Mule [aut, cre] (<https://orcid.org/0000-0001-8457-2716>), Andrew Martins [aut] (<https://orcid.org/0000-0002-1832-1924>), John Tsang [pdr] (<https://orcid.org/0000-0003-3186-3047>)
+# Maintainer: Matthew Mule <mattmule@gmail.com>
+# Repository: CRAN
+# Date/Publication: 2023-03-17 23:20:02 UTC
+
+# See
+# https://docs.conda.io/projects/conda-build for
+# more information about meta.yaml
diff --git a/recipes/r-easydifferentialgenecoexpression/meta.yaml b/recipes/r-easydifferentialgenecoexpression/meta.yaml
index 3ca98180e3570..da710a321155f 100644
--- a/recipes/r-easydifferentialgenecoexpression/meta.yaml
+++ b/recipes/r-easydifferentialgenecoexpression/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '1.0' %}
+{% set version = '1.4' %}
 
 package:
   name: r-easydifferentialgenecoexpression
@@ -8,41 +8,39 @@ source:
   url:
     - {{ cran_mirror }}/src/contrib/easyDifferentialGeneCoexpression_{{ version }}.tar.gz
     - {{ cran_mirror }}/src/contrib/Archive/easyDifferentialGeneCoexpression/easyDifferentialGeneCoexpression_{{ version }}.tar.gz
-  sha256: 19156037a2fa498dc28d8db8d53797d74007135c43e53bc5f20d61a66100f5b7
+  sha256: d0e1653a311d5e5834ef4b9c333ae3fe5aee8333c1201517ee5f6cb556b054c7
 
 build:
-  number: 2
+  number: 0
   noarch: generic
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage('r-easydifferentialgenecoexpression', max_pin='x') }}
 
 requirements:
   host:
     - r-base
     - bioconductor-biobase
     - bioconductor-geoquery
-    - r-r.utils
     - bioconductor-annotate
     - bioconductor-diffcoexp
     - r-geneexpressionfromgeo
     - r-jetset
     - bioconductor-limma
     - r-magrittr
-    - r-stringi
     - r-xml2
   run:
     - r-base
     - bioconductor-biobase
     - bioconductor-geoquery
-    - r-r.utils
     - bioconductor-annotate
     - bioconductor-diffcoexp
     - r-geneexpressionfromgeo
     - r-jetset
     - bioconductor-limma
     - r-magrittr
-    - r-stringi
     - r-xml2
 
 test:
diff --git a/recipes/r-harmony/build.sh b/recipes/r-eggnog/build.sh
similarity index 100%
rename from recipes/r-harmony/build.sh
rename to recipes/r-eggnog/build.sh
diff --git a/recipes/r-eggnog/meta.yaml b/recipes/r-eggnog/meta.yaml
new file mode 100644
index 0000000000000..97de17d22f778
--- /dev/null
+++ b/recipes/r-eggnog/meta.yaml
@@ -0,0 +1,55 @@
+{% set version = "0.3.0" %}
+{% set github = "https://github.com/acidgenomics/r-eggnog" %}
+
+package:
+  name: r-eggnog
+  version: "{{ version }}"
+
+source:
+  url: "{{ github }}/archive/v{{ version }}.tar.gz"
+  sha256: 8c003ee0b7dd03b44b7d110eb5d45e46a98822950a8f7e75f70798d2c680cb2c
+
+build:
+  number: 0
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage('r-eggnog', max_pin="x.x") }}
+
+requirements:
+  host:
+    # Depends:
+    - r-base
+    # Imports:
+    - bioconductor-biocgenerics >=0.46.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - r-acidbase >=0.7.1
+    - r-goalie >=0.7.3
+    - r-pipette >=0.14.1
+  run:
+    # Depends:
+    - r-base
+    # Imports:
+    - bioconductor-biocgenerics >=0.46.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - r-acidbase >=0.7.1
+    - r-goalie >=0.7.3
+    - r-pipette >=0.14.1
+
+test:
+  commands:
+    - $R -e "library('EggNOG')"
+
+about:
+  home: https://r.acidgenomics.com/packages/eggnog/
+  dev_url: "{{ github }}"
+  license: AGPL-3.0
+  license_file: LICENSE
+  license_family: GPL
+  summary: EggNOG database annotations.
+
+extra:
+  recipe-maintainers:
+    - acidgenomics
+    - mjsteinbaugh
diff --git a/recipes/r-erah/meta.yaml b/recipes/r-erah/meta.yaml
new file mode 100644
index 0000000000000..78d36cf3c8adc
--- /dev/null
+++ b/recipes/r-erah/meta.yaml
@@ -0,0 +1,66 @@
+{% set name = "erah" %}
+{% set version = "2.0.1" %}
+
+package:
+  name: r-{{ name }}
+  version: '{{ version }}'
+
+source:
+  url:
+    - {{ cran_mirror }}/src/contrib/erah_{{ version }}.tar.gz
+    - {{ cran_mirror }}/src/contrib/Archive/erah/erah_{{ version }}.tar.gz
+  sha256: bd7f89d671ff90f70228ed59c8c1554ca6b3ffab721d50e4ac873daf1e80dc8c
+
+build:
+  number: 0
+  merge_build_host: false
+  script: R CMD INSTALL --build .
+  run_exports:
+    - {{ pin_subpackage('r-erah', max_pin="x") }}
+  rpaths:
+    - lib/R/lib/
+    - lib/
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - cross-r-base {{ r_base }}    # [build_platform != target_platform]
+  host:
+    - r-base
+    - r-hiclimr
+    - r-furrr
+    - r-future
+    - r-igraph
+    - r-osd
+    - r-progress
+    - r-quantreg
+    - r-signal
+    - r-tibble
+  run:
+    - r-base
+    - r-hiclimr
+    - r-furrr
+    - r-future
+    - r-igraph
+    - r-osd
+    - r-progress
+    - r-quantreg
+    - r-signal
+    - r-tibble
+
+test:
+  commands:
+    - $R -e "library('erah')"
+
+about:
+  home: https://CRAN.R-project.org/package=erah
+  summary: Automated compound deconvolution, alignment across samples, and identification of metabolites by spectral library matching in Gas Chromatography - Mass spectrometry (GC-MS) untargeted metabolomics.
+  description: Outputs a table with compound names, matching scores and the integrated area of the compound for each sample. Package implementation is described in Domingo-Almenara et al. (2016) <doi:10.1021/acs.analchem.6b02927>.
+  license: GPL-2.0-or-later
+  license_file:
+    - {{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2
+
+extra:
+  recipe-maintainers:
+    - hechth
diff --git a/recipes/r-gkmsvm/meta.yaml b/recipes/r-gkmsvm/meta.yaml
index 337c0c4aef042..8a6e9c9e03482 100644
--- a/recipes/r-gkmsvm/meta.yaml
+++ b/recipes/r-gkmsvm/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '0.82.0' %}
+{% set version = '0.83.0' %}
 
 package:
   name: r-gkmsvm
@@ -8,10 +8,10 @@ source:
   url:
     - {{ cran_mirror }}/src/contrib/gkmSVM_{{ version }}.tar.gz
     - {{ cran_mirror }}/src/contrib/Archive/gkmSVM/gkmSVM_{{ version }}.tar.gz
-  sha256: 751d536cde502ebf8a39f6a2b8d57939ec1f045bce954b8054f0650d16c14cd4
+  sha256: 65825a0a3dc8bcb383331606199b132565da452d17e449c508d21c950997e9ad
 
 build:
-  number: 3
+  number: 0
   rpaths:
     - lib/R/lib/
     - lib/
diff --git a/recipes/r-goalie/meta.yaml b/recipes/r-goalie/meta.yaml
index 962f785034fae..166ff214cc367 100644
--- a/recipes/r-goalie/meta.yaml
+++ b/recipes/r-goalie/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.6.13" %}
+{% set version = "0.7.7" %}
 {% set github = "https://github.com/acidgenomics/r-goalie" %}
 
 package:
@@ -7,11 +7,13 @@ package:
 
 source:
   url: "{{ github }}/archive/v{{ version }}.tar.gz"
-  sha256: dcf14bd3b580338e5ed009d01dbe9419bf72083bd781784f730dc93032d69111
+  sha256: 58e751134e5b0431a3a8fee58eefdef2b169e782f1a6eea623c6c9e7fadcd937
   
 build:
-  number: 0
+  number: 1
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('r-goalie', max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/r-grain/meta.yaml b/recipes/r-grain/meta.yaml
index 9d02942bc8943..18c6cd5efde07 100644
--- a/recipes/r-grain/meta.yaml
+++ b/recipes/r-grain/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '1.3.13' %}
+{% set version = '1.4.1' %}
 
 package:
   name: r-grain
@@ -8,14 +8,15 @@ source:
   url:
     - {{ cran_mirror }}/src/contrib/gRain_{{ version }}.tar.gz
     - {{ cran_mirror }}/src/contrib/Archive/gRain/gRain_{{ version }}.tar.gz
-  sha256: 3805ca73adec3d74325ea8a2208b9c8473e012010e5902e0e262d4e985b77dd5
+  sha256: d9f926aa876270ab4ae156a70703ec8ccd384cc6a7bfe5de4d1de3ef9e056485
 
 build:
-  number: 3
+  number: 0
   rpaths:
     - lib/R/lib/
     - lib/
-
+  run_exports:
+    - {{ pin_subpackage("r-grain", max_pin="x.x") }}
 requirements:
   build:
     - {{ compiler('c') }}
diff --git a/recipes/r-grbase/meta.yaml b/recipes/r-grbase/meta.yaml
index ae127ab4cfb87..f00657d4a41c5 100644
--- a/recipes/r-grbase/meta.yaml
+++ b/recipes/r-grbase/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '1.8.9' %}
+{% set version = '2.0.1' %}
 
 package:
   name: r-grbase
@@ -8,13 +8,15 @@ source:
   url:
     - {{ cran_mirror }}/src/contrib/gRbase_{{ version }}.tar.gz
     - {{ cran_mirror }}/src/contrib/Archive/gRbase/gRbase_{{ version }}.tar.gz
-  sha256: dacab442d896e4593c6196e8446b75c4144a1c4ebc3f039dc624516038193d7e
+  sha256: 1ee49352854954b469bd23eeb1b044b54fe622c4f214d8291f57bc1444c781a9
 
 build:
-  number: 3
+  number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage('r-grbase', max_pin="x") }}
 
 requirements:
   build:
@@ -23,30 +25,22 @@ requirements:
     - make
   host:
     - r-base
-    - r-biocmanager
+    - r-igraph
+    - r-magrittr
     - r-matrix
-    - bioconductor-rbgl
     - r-rcpp >=0.11.1
-    - r-rcpparmadillo
     - r-rcppeigen
-    - bioconductor-rgraphviz
-    - bioconductor-graph
-    - r-igraph
-    - r-magrittr
+    - r-rcpparmadillo
     - libblas
     - liblapack
   run:
     - r-base
-    - r-biocmanager
+    - r-igraph
+    - r-magrittr
     - r-matrix
-    - bioconductor-rbgl
     - r-rcpp >=0.11.1
-    - r-rcpparmadillo
     - r-rcppeigen
-    - bioconductor-rgraphviz
-    - bioconductor-graph
-    - r-igraph
-    - r-magrittr
+    - r-rcpparmadillo
 
 test:
   commands:
diff --git a/recipes/r-harmony/meta.yaml b/recipes/r-harmony/meta.yaml
deleted file mode 100644
index 2fde7c768fbde..0000000000000
--- a/recipes/r-harmony/meta.yaml
+++ /dev/null
@@ -1,59 +0,0 @@
-{% set version = '0.1' %}
-
-package:
-  name: r-harmony
-  version: {{ version }}
-
-source:
-    url: https://github.com/immunogenomics/harmony/archive/{{ version }}.tar.gz
-    sha256: 1243bec2c9cd96d32ee48cafc74795bf18c3b50789e388ef8d80e4440940ae2b 
-
-build:
-  # https://github.com/immunogenomics/harmony/issues/180
-  skip: True  # [osx]
-  number: 6
-  rpaths:
-    - lib/R/lib/
-    - lib/
-
-requirements:
-  build:
-    - {{ compiler('cxx') }}
-  host:
-    - r-base
-    - r-rcpp
-    - r-dplyr 
-    - r-cowplot
-    - r-tidyr
-    - r-ggplot2 
-    - r-irlba
-    - r-matrix
-    - r-tibble
-    - bioconductor-singlecellexperiment
-    - r-rlang
-    - r-rcpparmadillo
-    - r-rcppprogress
-  run:
-    - r-base
-    - r-dplyr 
-    - r-cowplot
-    - r-tidyr
-    - r-ggplot2 
-    - r-irlba
-    - r-matrix
-    - r-tibble
-    - bioconductor-singlecellexperiment
-    - r-rlang
-    - r-rcpparmadillo
-    - r-rcppprogress
-
-test:
-  commands:
-    - $R -e "library('harmony')"
-
-about:
-  home: https://github.com/immunogenomics/harmony
-  dev_url: https://github.com/immunogenomics/harmony 
-  license: GPL-3.0-only
-  license_file: LICENSE
-  summary: Fast, sensitive and accurate integration of single-cell data with Harmony
diff --git a/recipes/r-htscluster/meta.yaml b/recipes/r-htscluster/meta.yaml
index a1180ab690ea0..f931d828be854 100644
--- a/recipes/r-htscluster/meta.yaml
+++ b/recipes/r-htscluster/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '2.0.10' %}
+{% set version = '2.0.11' %}
 
 package:
   name: r-htscluster
@@ -8,11 +8,13 @@ source:
   url:
     - {{ cran_mirror }}/src/contrib/HTSCluster_{{ version }}.tar.gz
     - {{ cran_mirror }}/src/contrib/Archive/HTSCluster/HTSCluster_{{ version }}.tar.gz
-  sha256: 36bdeea9074efa962622f6495f35442c51266a9e066ae856ec7fd2eab4239669
+  sha256: 77dd865197c859a3f47f68f5786fa0e24ce06a73ef9801e76c7425453d843a75
 
 build:
-  number: 2
+  number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage("r-htscluster", max_pin="x") }}
   rpaths:
     - lib/R/lib/
     - lib/
diff --git a/recipes/r-workflowscriptscommon/build.sh b/recipes/r-immucellaimouse/build.sh
similarity index 100%
rename from recipes/r-workflowscriptscommon/build.sh
rename to recipes/r-immucellaimouse/build.sh
diff --git a/recipes/r-immucellaimouse/meta.yaml b/recipes/r-immucellaimouse/meta.yaml
new file mode 100644
index 0000000000000..26e04ad0e5e3d
--- /dev/null
+++ b/recipes/r-immucellaimouse/meta.yaml
@@ -0,0 +1,52 @@
+{% set version = "1.0" %}
+
+package:
+  name: r-immucellaimouse
+  version: {{ version }}
+
+source:
+  url:
+    https://github.com/lydiaMyr/ImmuCellAI-mouse/archive/refs/heads/main.zip
+  sha256: f83fb931ca2dc401d8d569f96620c709613934e4817ef12193b13f5cdf60d154
+
+build:
+  run_exports:
+    - {{ pin_subpackage('r-immucellaimouse', max_pin="2") }}
+  number: 0
+  noarch: generic
+  rpaths:
+    - lib/R/lib/
+    - lib/
+
+requirements:
+  host:
+    - r-base
+    - r-roxygen2 >=6.0.1
+    - r-rcpp >=0.12.14
+    - bioconductor-gsva
+    - r-dplyr
+  run:
+    - r-base
+    - r-rcpp >=0.12.14
+    - bioconductor-gsva
+    - r-dplyr
+    - r-mass
+
+test:
+  commands:
+    - $R -e "library(ImmuCellAImouse)"
+
+about:
+  home: https://github.com/lydiaMyr/ImmuCellAI-mouse
+  license: GPL
+  summary: "ImmuCellAI-mouse is a tool to estimate the abundance of 36 immune cells based on gene expression profile from RNA-Seq or microarray data."
+  license_family: GPL
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2'
+
+extra:
+  recipe-maintainers:
+    - LorenzoMerotto
+  identifiers:
+    -  doi:10.1093/bioinformatics/btab711
+  container:
+    extended-base: true
diff --git a/recipes/r-jackstraw/meta.yaml b/recipes/r-jackstraw/meta.yaml
index 5bb00456a1c3e..87c8d069725c3 100644
--- a/recipes/r-jackstraw/meta.yaml
+++ b/recipes/r-jackstraw/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '1.3.8' %}
+{% set version = '1.3.9' %}
 
 package:
   name: r-jackstraw
@@ -8,14 +8,16 @@ source:
   url:
     - {{ cran_mirror }}/src/contrib/jackstraw_{{ version }}.tar.gz
     - {{ cran_mirror }}/src/contrib/Archive/jackstraw/jackstraw_{{ version }}.tar.gz
-  sha256: 897146888be7f7962a038939fa88005de729f4fcbf4291f6577d59f456cca011
+  sha256: 6a599ec3803c64884973eeab44aaf5a78ec44406ef4f536993406e4b6c90f871
 
 build:
-  number: 1
+  number: 0
   noarch: generic
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage('r-jackstraw', max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/r-ldweaver/build.sh b/recipes/r-ldweaver/build.sh
new file mode 100644
index 0000000000000..df943f40e3e3d
--- /dev/null
+++ b/recipes/r-ldweaver/build.sh
@@ -0,0 +1,22 @@
+#!/bin/bash
+
+# 'Autobrew' is being used by more and more packages these days
+# to grab static libraries from Homebrew bottles. These bottles
+# are fetched via Homebrew's --force-bottle option which grabs
+# a bottle for the build machine which may not be macOS 10.9.
+# Also, we want to use conda packages (and shared libraries) for
+# these 'system' dependencies. See:
+# https://github.com/jeroen/autobrew/issues/3
+export DISABLE_AUTOBREW=1
+
+# R refuses to build packages that mark themselves as Priority: Recommended
+mv DESCRIPTION DESCRIPTION.old
+grep -va '^Priority: ' DESCRIPTION.old > DESCRIPTION
+# shellcheck disable=SC2086
+${R} CMD INSTALL --build . ${R_ARGS}
+
+# Add more build steps here, if they are necessary.
+
+# See
+# https://docs.conda.io/projects/conda-build
+# for a list of environment variables that are set during the build process.
diff --git a/recipes/r-ldweaver/meta.yaml b/recipes/r-ldweaver/meta.yaml
new file mode 100644
index 0000000000000..9d1ef8ded260c
--- /dev/null
+++ b/recipes/r-ldweaver/meta.yaml
@@ -0,0 +1,87 @@
+{% set name = "r-ldweaver" %}
+{% set version = "1.5" %}
+{% set sha256 = "4952b30c4e50850d6ed119469b377ecd49047f4802c5c1b84564cad60d972676" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/Sudaraka88/LDWeaver/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  # This is required to make R link correctly on Linux.
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}              # [not win]
+    - {{ compiler('cxx') }}            # [not win]
+  host:
+    - r-base 4.*
+    - bioconductor-genomicranges
+    - bioconductor-genbankr
+    - r-matrix
+    - r-matrixextra
+    - r-rcolorbrewer
+    - r-rcpp
+    - r-rcpparmadillo
+    - r-ape
+    - r-chromomap
+    - r-data.table
+    - r-dplyr
+    - r-fitdistrplus
+    - r-ggnewscale
+    - r-ggplot2
+    - r-ggraph
+    - bioconductor-ggtree
+    - r-heatmap3
+    - r-htmlwidgets
+    - r-igraph
+    - r-phytools
+    - r-plyr
+    - r-stringi
+    - openjdk
+  run:
+    - r-base 4.*
+    - bioconductor-genomicranges
+    - bioconductor-genbankr
+    - r-matrix
+    - r-matrixextra
+    - r-rcolorbrewer
+    - r-rcpp
+    - r-rcpparmadillo
+    - r-ape
+    - r-chromomap
+    - r-data.table
+    - r-dplyr
+    - r-fitdistrplus
+    - r-ggnewscale
+    - r-ggplot2
+    - r-ggraph
+    - bioconductor-ggtree
+    - r-heatmap3
+    - r-htmlwidgets
+    - r-igraph
+    - r-phytools
+    - r-plyr
+    - r-stringi
+    - openjdk
+
+test:
+  commands:
+    # You can put additional test commands to be run here.
+    - $R -e "library('LDWeaver')"           # [not win]
+
+about:
+  home: https://github.com/Sudaraka88/LDWeaver
+  license: GPL-3.0-or-later
+  summary: Perform genomewide epistasis analysis by evaluating the LD structure in bacteria.
+  license_family: GPL3
+  license_file: LICENSE
diff --git a/recipes/r-leidenbase/meta.yaml b/recipes/r-leidenbase/meta.yaml
index 0894c430ee0cf..fcd2ae951d297 100644
--- a/recipes/r-leidenbase/meta.yaml
+++ b/recipes/r-leidenbase/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.1.18" %}
+{% set version = "0.1.27" %}
 
 package:
   name: r-leidenbase
@@ -6,10 +6,10 @@ package:
 
 source:
   url: https://cran.rstudio.com/src/contrib/leidenbase_{{ version }}.tar.gz
-  sha256: b56fa823bce97c98e886896111041d50b12c1d1aad4ec01a829851a537d0dbfd
+  sha256: c3168a68828aacfcf78c6c39415b4771f084c5b5c3c9b2e226dcb8cf909d7b27
 
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
@@ -38,5 +38,9 @@ test:
 
 about:
   home: https://cole-trapnell-lab.github.io/leidenbase/
-  license: GPL2, GPL3, BSD
+  license: GPL-2.0-only, GPL-3.0-only, BSD
   summary: An R to C interface that runs the Leiden community detection algorithm to find a basic partition
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/r-liger/meta.yaml b/recipes/r-liger/meta.yaml
index ff011ae791908..bef57845d132b 100644
--- a/recipes/r-liger/meta.yaml
+++ b/recipes/r-liger/meta.yaml
@@ -1,21 +1,24 @@
-{% set version = '1.0.0' %}
+{% set name = "liger" %}
+{% set version = '2.0.1' %}
 
 package:
-  name: r-liger
+  name: r-{{ name }}
   version: {{ version|replace("-", "_") }}
 
 source:
   url:
     - {{ cran_mirror }}/src/contrib/rliger_{{ version }}.tar.gz
     - {{ cran_mirror }}/src/contrib/Archive/rliger/rliger_{{ version }}.tar.gz
-  sha256: b905643e6609b051bd257c5d6998c7ba03d19700b804d022224f8f037ce50dbf
+  sha256: e1163722608ba2c2424e87f44b4d62c36dacca429dfb4fee41eb9a0da99703a4
 
 build:
-  number: 5
+  number: 0
   script: R CMD INSTALL --build .
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage("r-liger", max_pin="x") }}
 
 requirements:
   build:
@@ -23,71 +26,65 @@ requirements:
     - make
   host:
     - r-base
-    - r-fnn
-    - r-hmisc
-    - r-rann.l1
     - r-rcpp >=0.12.10
     - r-rcpparmadillo
     - r-rcppprogress
     - r-rtsne
     - r-cowplot
-    - r-dosnow
     - r-dplyr
-    - r-foreach
     - r-ggplot2
-    - r-ggrepel
     - r-ica
     - r-irlba
     - r-mclust
-    - r-patchwork
-    - r-doparallel
     - r-uwot
     - r-hdf5r
-    - r-plyr
-    - r-riverplot
-    - r-snow
-    - r-psych
-    - r-rcppeigen
     - r-rann
+    - r-circlize
+    - bioconductor-complexheatmap
+    - r-leidenalg >=1.1.1
+    - bioconductor-s4vectors
+    - r-cli
+    - r-rlang
+    - r-matrix
+    - r-lifecycle
+    - r-magrittr
+    - r-scales
+    - r-rcolorbrewer
+    - r-viridis
   run:
     - r-base
-    - r-fnn
-    - r-hmisc
-    - r-rann.l1
     - r-rcpp >=0.12.10
     - r-rcpparmadillo
     - r-rcppprogress
     - r-rtsne
     - r-cowplot
-    - r-doparallel
-    - r-uwot
-    - r-hdf5r
-    - r-dosnow
     - r-dplyr
-    - r-foreach
     - r-ggplot2
-    - r-ggrepel
     - r-ica
     - r-irlba
     - r-mclust
-    - r-patchwork
-    - r-plyr
-    - r-riverplot
-    - r-snow
-    - r-psych
-    - r-rcppeigen
+    - r-uwot
+    - r-hdf5r
     - r-rann
-    - r-reticulate
-    - openjdk >=6
-    - umap-learn
-
+    - r-circlize
+    - bioconductor-complexheatmap
+    - r-leidenalg >=1.1.1
+    - bioconductor-s4vectors
+    - r-cli
+    - r-rlang
+    - r-matrix
+    - r-lifecycle
+    - r-magrittr
+    - r-scales
+    - r-rcolorbrewer
+    - r-viridis
 test:
   commands:
     - $R -e "library('rliger')"
 
 about:
   home: https://github.com/MacoskoLab/liger
-  license: GPL-3
+  license: GPL-3.0-or-later
   summary: Uses an extension of nonnegative matrix factorization to identify shared and dataset-specific
     factors. See Welch J, Kozareva V, et al (2019) <doi:10.1016/j.cell.2019.05.006>,
     and Liu J, Gao C, Sodicoff J, et al (2020) <doi:10.1038/s41596-020-0391-8> for more
@@ -95,7 +92,12 @@ about:
   license_family: GPL3
   license_file:
     - '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+  doc_url: https://welch-lab.github.io/liger/index.html
+  dev_url: https://github.com/MacoskoLab/liger
 
 extra:
   recipe-maintainers:
+    - theAeon
     - raivivek
+  identifiers:
+    - doi:10.1016/j.cell.2019.05.006
diff --git a/recipes/r-linxreport/build.sh b/recipes/r-linxreport/build.sh
new file mode 100644
index 0000000000000..6fd1541af9a34
--- /dev/null
+++ b/recipes/r-linxreport/build.sh
@@ -0,0 +1,6 @@
+#!/bin/bash
+$R CMD INSTALL --build .
+
+mkdir -p ${PREFIX}/bin
+cp ${SRC_DIR}/inst/cli/linxreport.R ${PREFIX}/bin
+chmod +x ${PREFIX}/bin/linxreport.R
diff --git a/recipes/r-linxreport/meta.yaml b/recipes/r-linxreport/meta.yaml
new file mode 100644
index 0000000000000..a7ac9a43641e4
--- /dev/null
+++ b/recipes/r-linxreport/meta.yaml
@@ -0,0 +1,56 @@
+{% set version = "1.0.0" %}
+{% set sha256 = "447658b9ac5974f696c6b2c0fce59fc846d7419da8fc79aa81109630701cef55" %}
+
+package:
+  name: r-linxreport
+  version: '{{ version }}'
+
+source:
+  url: https://github.com/umccr/linxreport/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: '{{ sha256 }}'
+
+build:
+  noarch: generic
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("r-linxreport", max_pin="x.x") }}
+
+requirements:
+  host:
+    - r-base >=4
+    - r-assertthat
+    - r-details
+    - r-dplyr
+    - r-dt
+    - r-fs
+    - r-gtools
+    - r-optparse
+    - r-readr
+    - r-rlang
+    - r-rmarkdown
+    - r-sessioninfo
+    - r-stringr
+  run:
+    - r-base >=4
+    - r-assertthat
+    - r-details
+    - r-dplyr
+    - r-dt
+    - r-fs
+    - r-gtools
+    - r-optparse
+    - r-readr
+    - r-rlang
+    - r-rmarkdown
+    - r-sessioninfo
+    - r-stringr
+
+test:
+  commands:
+    - $R -e "library('linxreport')"
+
+about:
+  home: https://github.com/umccr/linxreport
+  license: MIT + file LICENSE
+  license_family: MIT
+  summary: LINX Result Reporter
diff --git a/recipes/r-metablastr/build.sh b/recipes/r-metablastr/build.sh
new file mode 100644
index 0000000000000..e8fdcfec9c6d1
--- /dev/null
+++ b/recipes/r-metablastr/build.sh
@@ -0,0 +1,7 @@
+#!/bin/bash
+export DISABLE_AUTOBREW=1
+
+mv DESCRIPTION DESCRIPTION.old
+grep -va '^Priority: ' DESCRIPTION.old > DESCRIPTION
+# shellcheck disable=SC2086
+${R} CMD INSTALL --build . ${R_ARGS}
diff --git a/recipes/r-metablastr/meta.yaml b/recipes/r-metablastr/meta.yaml
new file mode 100644
index 0000000000000..ed9b588c2ee99
--- /dev/null
+++ b/recipes/r-metablastr/meta.yaml
@@ -0,0 +1,76 @@
+{% set name = "metablastr" %}
+{% set version = "0.3.2" %}
+
+package:
+  name: r-{{ name }}
+  version: '{{ version }}'
+
+source:
+  url: https://github.com/drostlab/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 0e053745104c0abc7aec6932e90fd3185d13413b6a700b42f5ce136738c1a2d0
+
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports:
+    - {{ pin_subpackage('r-metablastr', max_pin="x") }}
+
+requirements:
+  build:
+    - cross-r-base {{ r_base }}  # [build_platform != target_platform]
+    - autoconf  # [unix]
+    - "{{ compiler('c') }}"  # [unix]
+    - "{{ compiler('m2w64_c') }}"  # [win]
+    - "{{ compiler('cxx') }}"  # [unix]
+    - "{{ compiler('m2w64_cxx') }}"  # [win]
+    - posix  # [win]
+  host:
+    - r-seqinr >=3.6_1
+    - r-scales >=1.0.0
+    - r-readr >=1.3.1
+    - r-fs >=1.5.1
+    - r-ggplot2 >=3.3.3
+    - r-ggsci >=2.9
+    - r-ggridges >=0.5.0
+    - libpq >=14.1
+    - r-rcolorbrewer >=1.1_2
+    - r-rcpp >=0.12.0
+    - r-base >=3.3.2
+    - bioconductor-biostrings >=2.48.0
+    - bioconductor-genomicranges >=1.30.3
+    - bioconductor-genomicfeatures >=1.30.3
+    - bioconductor-rsamtools >=1.30.0
+    - bioconductor-rtracklayer >=1.38.3
+    - bioconductor-iranges >=2.16
+  run:
+    - r-seqinr >=3.6_1
+    - r-scales >=1.0.0
+    - r-readr >=1.3.1
+    - r-fs >=1.5.1
+    - r-ggplot2 >=3.3.3
+    - r-ggsci >=2.9
+    - r-ggridges >=0.5.0
+    - r-rcolorbrewer >=1.1_2
+    - r-rcpp >=0.12.0
+    - r-base >=3.3.2
+    - bioconductor-biostrings >=2.48.0
+    - bioconductor-genomicranges >=1.30.3
+    - bioconductor-genomicfeatures >=1.30.3
+    - bioconductor-rsamtools >=1.30.0
+    - bioconductor-rtracklayer >=1.38.3
+    - bioconductor-iranges >=2.16
+test:
+  commands:
+    - $R -e "library('metablastr')"  # [not win]
+
+about:
+  home: https://github.com/drostlab/metablastr
+  summary:  The metablastr package harnesses the power of BLAST by providing interface functions between it and R.
+  license: GPL-2.0-or-later
+  license_family: GPL
+
+extra:
+  recipe-maintainers:
+    - gallardoalba
diff --git a/recipes/r-metacoder/meta.yaml b/recipes/r-metacoder/meta.yaml
index d4dcb0e8b2ae0..82b9450e80aaf 100644
--- a/recipes/r-metacoder/meta.yaml
+++ b/recipes/r-metacoder/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '0.3.6' %}
+{% set version = '0.3.7' %}
 
 package:
   name: r-metacoder
@@ -8,10 +8,12 @@ source:
   url:
     - {{ cran_mirror }}/src/contrib/metacoder_{{ version }}.tar.gz
     - {{ cran_mirror }}/src/contrib/Archive/metacoder/metacoder_{{ version }}.tar.gz
-  sha256: a2ab9675e1b08f4bf7027a74c4e7a1777e71850420e0a901784da0ddbdc5f896
+  sha256: a48bf05b526cc3125605fcb221e96f55c74fd18d535c1a0e55982e3cbf3ffe38
 
 build:
-  number: 3
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('r-metacoder', max_pin="x.x") }}
   rpaths:
     - lib/R/lib/
     - lib/
@@ -73,7 +75,8 @@ test:
     - $R -e "library('metacoder')"
 
 about:
-  home: https://grunwaldlab.github.io/metacoder_documentation/
+  home: https://github.com/grunwaldlab/metacoder
+  doc_url: https://grunwaldlab.github.io/metacoder_documentation/
   license: GPL-2 | GPL-3
   summary: A set of tools for parsing, manipulating, and graphing data classified by a hierarchy
     (e.g. a taxonomy).
diff --git a/recipes/r-misha/3.7.0/build.sh b/recipes/r-misha/3.7.0/build.sh
new file mode 100644
index 0000000000000..937ed18ca8d4d
--- /dev/null
+++ b/recipes/r-misha/3.7.0/build.sh
@@ -0,0 +1,2 @@
+sed -i 's/CC=g++/CC=\$(CXX)/' src/Makefile
+$R CMD INSTALL --build .
diff --git a/recipes/r-misha/3.7.0/meta.yaml b/recipes/r-misha/3.7.0/meta.yaml
new file mode 100644
index 0000000000000..29c2d9b973b1c
--- /dev/null
+++ b/recipes/r-misha/3.7.0/meta.yaml
@@ -0,0 +1,45 @@
+{% set version = "3.7.0" %}
+{% set name = "r-misha" %}
+{% set commit = "fb45473ac27833154724bac04136c601e7b2a6f0" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: '{{ version }}'
+
+source:
+  url: 'https://github.com/tanaylab/misha/archive/{{ commit }}.zip'
+  sha256: a27885729422368972734cf7a657a0a4f8abada8aa5728cb9a4ac745f3184d5a
+
+build:
+  # https://github.com/tanaylab/misha/issues/9
+  skip: True  # [osx]
+  number: 0
+  rpaths:
+    - lib/R/lib
+    - lib/
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - sed
+  host:
+    - r-base
+    - r-devtools
+  run:
+    - r-base
+
+test:
+  commands:
+    - '$R -e "library(misha)"'
+
+about:
+  home: 'https://tanaylab.github.io/misha/index.html'
+  license: GPL-2
+  summary: 'Toolkit for analysis of genomic data'
+
+extra:
+  maintainers:
+    - Misha Hoichman <misha@hoichman.com>
diff --git a/recipes/r-misha/3.7.1/build.sh b/recipes/r-misha/3.7.1/build.sh
new file mode 100644
index 0000000000000..937ed18ca8d4d
--- /dev/null
+++ b/recipes/r-misha/3.7.1/build.sh
@@ -0,0 +1,2 @@
+sed -i 's/CC=g++/CC=\$(CXX)/' src/Makefile
+$R CMD INSTALL --build .
diff --git a/recipes/r-misha/3.7.1/meta.yaml b/recipes/r-misha/3.7.1/meta.yaml
new file mode 100644
index 0000000000000..1a4b49c1cc2ec
--- /dev/null
+++ b/recipes/r-misha/3.7.1/meta.yaml
@@ -0,0 +1,45 @@
+{% set version = "3.7.1" %}
+{% set name = "r-misha" %}
+{% set commit = "eaf2e6122166f95b176c2c9746ef1505791683ef" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: '{{ version }}'
+
+source:
+  url: 'https://github.com/tanaylab/misha/archive/{{ commit }}.zip'
+  sha256: 443b9ab461c36ff4da0f75868f7ac362ce3fff786574516d131ac6ddc671c4f1
+
+build:
+  # https://github.com/tanaylab/misha/issues/9
+  skip: True  # [osx]
+  number: 0
+  rpaths:
+    - lib/R/lib
+    - lib/
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - sed
+  host:
+    - r-base
+    - r-devtools
+  run:
+    - r-base
+
+test:
+  commands:
+    - '$R -e "library(misha)"'
+
+about:
+  home: 'https://tanaylab.github.io/misha/index.html'
+  license: GPL-2
+  summary: 'Toolkit for analysis of genomic data'
+
+extra:
+  maintainers:
+    - Misha Hoichman <misha@hoichman.com>
diff --git a/recipes/r-mixkernel/meta.yaml b/recipes/r-mixkernel/meta.yaml
index 5fd3f52755e33..3d36221f9ce5b 100644
--- a/recipes/r-mixkernel/meta.yaml
+++ b/recipes/r-mixkernel/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '0.8' %}
+{% set version = '0.9' %}
 
 package:
   name: r-mixkernel
@@ -8,14 +8,16 @@ source:
   url:
     - {{ cran_mirror }}/src/contrib/mixKernel_{{ version }}.tar.gz
     - {{ cran_mirror }}/src/contrib/Archive/mixKernel/mixKernel_{{ version }}.tar.gz
-  sha256: d15ba9ffe7772ef8e082d220791ed922c19765a36eb982ede9d7cd5fb72b9c6a
+  sha256: dfa6304a9f67a5f1b7217d35c28f24c51906304cc6ed533c86f11407065e36ea
 
 build:
   noarch: generic
-  number: 2
+  number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage('r-mixkernel', max_pin="x") }}
 
 requirements:
   host:
@@ -61,4 +63,3 @@ about:
     important variables are also provided in the package. Jerome Mariette and  Nathalie
     Villa-Vialaneix (2017) <doi:10.1093/bioinformatics/btx682>.
   license_family: GPL3
-
diff --git a/recipes/r-monocle3/meta.yaml b/recipes/r-monocle3/meta.yaml
index 1614a1c1d9d71..f2d836c191569 100644
--- a/recipes/r-monocle3/meta.yaml
+++ b/recipes/r-monocle3/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.0.0" %}
+{% set version = "1.3.1" %}
 {% set github = "https://github.com/cole-trapnell-lab/monocle3" %}
 
 package:
@@ -6,14 +6,16 @@ package:
   version: "{{ version }}"
 
 source:
-  url: "{{ github }}/archive/{{ version }}.tar.gz"
-  sha256: f09521a22b3584d000675e7ed659f2f41e823667bd019b38c52f6ab2ea654a00
+  url: "{{ github }}/archive/v{{ version }}.tar.gz"
+  sha256: 30e86d5323ea22b302614813ecf102f26774b42710589671a1f1d51ef9ad183d
 
 build:
-  number: 5
+  number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage('r-monocle3', max_pin="x.x") }}
 
 requirements:
   build:
@@ -28,18 +30,21 @@ requirements:
     - bioconductor-biocgenerics >=0.28
     - bioconductor-delayedarray >=0.8
     - bioconductor-delayedmatrixstats >=1.4
+    - bioconductor-hdf5array
     - bioconductor-limma >=3.38.3
     - bioconductor-s4vectors
     - bioconductor-summarizedexperiment >=1.11.5
     - r-assertthat >=0.2.1
     - r-dplyr >=0.8.0.1
     - r-ggplot2 >=3.1.1
+    - r-ggrastr
     - r-ggrepel >=0.8.1
     - r-grr
     - r-htmlwidgets >=1.3
     - r-igraph >=1.2.4
     - r-irlba >=2.3.3
     - r-leidenbase
+    - r-lme4
     - r-lmtest >=0.9_36
     - r-mass >=7.3_51.4
     - r-matrix >=1.2_17
@@ -87,18 +92,21 @@ requirements:
     - bioconductor-biocgenerics >=0.28
     - bioconductor-delayedarray >=0.8
     - bioconductor-delayedmatrixstats >=1.4
+    - bioconductor-hdf5array
     - bioconductor-limma >=3.38.3
     - bioconductor-s4vectors
     - bioconductor-summarizedexperiment >=1.11.5
     - r-assertthat >=0.2.1
     - r-dplyr >=0.8.0.1
     - r-ggplot2 >=3.1.1
+    - r-ggrastr
     - r-ggrepel >=0.8.1
     - r-grr
     - r-htmlwidgets >=1.3
     - r-igraph >=1.2.4
     - r-irlba >=2.3.3
     - r-leidenbase
+    - r-lme4
     - r-lmtest >=0.9_36
     - r-mass >=7.3_51.4
     - r-matrix >=1.2_17
diff --git a/recipes/r-mutsigextractor/build.sh b/recipes/r-mutsigextractor/build.sh
new file mode 100644
index 0000000000000..af6547bf3c22e
--- /dev/null
+++ b/recipes/r-mutsigextractor/build.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+$R CMD INSTALL --build .
diff --git a/recipes/r-mutsigextractor/meta.yaml b/recipes/r-mutsigextractor/meta.yaml
new file mode 100644
index 0000000000000..43ca06abbf2c8
--- /dev/null
+++ b/recipes/r-mutsigextractor/meta.yaml
@@ -0,0 +1,40 @@
+{% set version = "1.28" %}
+{% set sha256 = "395d89050444f87babf22e3341d4898e3b0d283462ffb1f161da3b8bdc975aee" %}
+
+package:
+  name: r-mutsigextractor
+  version: '{{ version }}'
+
+source:
+  url: https://github.com/UMCUGenetics/mutSigExtractor/archive/refs/tags/{{ version }}.tar.gz
+  sha256: '{{ sha256 }}'
+
+build:
+  noarch: generic
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("r-mutsigextractor", max_pin="x.x") }}
+
+requirements:
+  host:
+    - r-base
+    - bioconductor-genomeinfodb
+    - bioconductor-bsgenome
+    - bioconductor-bsgenome.hsapiens.ucsc.hg19
+    - bioconductor-bsgenome.hsapiens.ucsc.hg38
+  run:
+    - r-base
+    - bioconductor-genomeinfodb
+    - bioconductor-bsgenome
+    - bioconductor-bsgenome.hsapiens.ucsc.hg19
+    - bioconductor-bsgenome.hsapiens.ucsc.hg38
+
+test:
+  commands:
+    - $R -e "library('mutSigExtractor')"
+
+about:
+  home: https://github.com/UMCUGenetics/mutSigExtractor
+  license: GPL-3.0-only
+  license_family: GPL3
+  summary: Extract mutational signatures from VCF files
diff --git a/recipes/r-mytai/meta.yaml b/recipes/r-mytai/meta.yaml
index bcec0967095a4..b4d29b1799136 100644
--- a/recipes/r-mytai/meta.yaml
+++ b/recipes/r-mytai/meta.yaml
@@ -10,10 +10,12 @@ source:
   sha256: 9dc0ed24dd75f763f909ecf763d873a2242640f49699e2e24739e2cf77d6a639
 
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage('r-mytai', max_pin="x") }}
 
 requirements:
   build:
@@ -66,14 +68,15 @@ requirements:
     - r-r.utils >=2.12.2
     - r-rcpparmadillo
     - r-textshaping
+
 test:
   commands:
-    - $R -e "library('myTAI')"  # [not win]
+    - $R -e "library('myTAI')"
 
 about:
   home: https://github.com/drostlab/myTAI
-  summary: Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2017) <doi:10.1093/bioinformatics/btx835>). The aim of this tool is to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest (Drost et al. (2016) <doi:10.1101/051565>).
-  license: GPLv3
+  summary: Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2018) doi:10.1093/bioinformatics/btx835). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest.
+  license: GPL-2.0-or-later
   license_family: GPL
 
 extra:
diff --git a/recipes/r-oncopharmadb/meta.yaml b/recipes/r-oncopharmadb/meta.yaml
index 2ecb3ad90f13f..bbfbdc7933bbf 100644
--- a/recipes/r-oncopharmadb/meta.yaml
+++ b/recipes/r-oncopharmadb/meta.yaml
@@ -1,17 +1,20 @@
-{% set version = "1.3.7" %}
+{% set name = "r-oncopharmadb" %}
+{% set version = "1.5.1" %}
 {% set github = "https://github.com/sigven/oncoPharmaDB" %}
 
 package:
-  name: r-oncopharmadb
+  name: "{{ name }}"
   version: "{{ version }}"
 
 source:
   url: https://github.com/sigven/pharmOncoX/archive/refs/tags/{{ version }}.tar.gz
-  sha256: 4ba6829d6fc80e8cb5dc69779a0c09ed3f45e479d2d13813b51aeca422889a72
+  sha256: 7765b9122063aeacd96db0c536141ab2e23a116a84e313b7264d707a09c92316
   
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   host:
@@ -21,6 +24,7 @@ requirements:
     - r-stringr
     - r-lgr
     - r-tidyr
+    - r-ggplot2
     - r-googledrive
     - r-rlang
     - r-assertthat
@@ -32,6 +36,7 @@ requirements:
     - r-stringr
     - r-lgr
     - r-tidyr
+    - r-ggplot2
     - r-googledrive
     - r-rlang
     - r-assertthat
diff --git a/recipes/r-ontologyplot/meta.yaml b/recipes/r-ontologyplot/meta.yaml
index 8b6b1b81d83ed..94c88333bac20 100644
--- a/recipes/r-ontologyplot/meta.yaml
+++ b/recipes/r-ontologyplot/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '1.6' %}
+{% set version = '1.7' %}
 
 package:
   name: r-ontologyplot
@@ -8,14 +8,16 @@ source:
   url:
     - {{ cran_mirror }}/src/contrib/ontologyPlot_{{ version }}.tar.gz
     - {{ cran_mirror }}/src/contrib/Archive/ontologyPlot/ontologyPlot_{{ version }}.tar.gz
-  sha256: 41a601e2201f32673c6830adc770a877be1ba4003b7352d4c09c8c50a3e8a158
+  sha256: d508b861cfd596555f1b7bea681de71c9674fa7b708bb00b7a55744fb2cfd61b
 
 build:
-  number: 4
+  number: 0
   noarch: generic
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage('r-ontologyplot', max_pin="x") }}
 
 requirements:
   host:
@@ -35,7 +37,8 @@ test:
 
 about:
   home: https://CRAN.R-project.org/package=ontologyPlot
-  license: GPL (>= 2)
+  license: GPL-2.0-or-later
   summary: Functions for visualising sets of ontological terms using the 'graphviz' layout system.
   license_family: GPL3
-  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2'
+  license_file:
+    - '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2'
diff --git a/recipes/r-panther/build.sh b/recipes/r-panther/build.sh
new file mode 100644
index 0000000000000..5bf492ab9fc06
--- /dev/null
+++ b/recipes/r-panther/build.sh
@@ -0,0 +1 @@
+$R CMD INSTALL --build .
diff --git a/recipes/r-panther/meta.yaml b/recipes/r-panther/meta.yaml
new file mode 100644
index 0000000000000..2e919526cef60
--- /dev/null
+++ b/recipes/r-panther/meta.yaml
@@ -0,0 +1,65 @@
+{% set version = "0.5.0" %}
+{% set github = "https://github.com/acidgenomics/r-panther" %}
+
+package:
+  name: r-panther
+  version: "{{ version }}"
+
+source:
+  url: "{{ github }}/archive/v{{ version }}.tar.gz"
+  sha256: e636e0e6ec3bbaf382609f93f2b02311db3b9138a4819e777176cabd07e7a05c
+
+build:
+  number: 0
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage('r-panther', max_pin="x.x") }}
+
+requirements:
+  host:
+    # Depends:
+    - r-base
+    # Imports:
+    - bioconductor-biocgenerics >=0.46.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.3.0
+    - r-acidgenerics >=0.7.3
+    - r-acidgenomes >=0.6.0
+    - r-acidplyr >=0.5.0
+    - r-goalie >=0.7.3
+    - r-pipette >=0.14.1
+    - r-syntactic >=0.7.0
+  run:
+    # Depends:
+    - r-base
+    # Imports:
+    - bioconductor-biocgenerics >=0.46.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.3.0
+    - r-acidgenerics >=0.7.3
+    - r-acidgenomes >=0.6.0
+    - r-acidplyr >=0.5.0
+    - r-goalie >=0.7.3
+    - r-pipette >=0.14.1
+    - r-syntactic >=0.7.0
+
+test:
+  commands:
+    - $R -e "library('PANTHER')"
+
+about:
+  home: https://r.acidgenomics.com/packages/panther/
+  dev_url: "{{ github }}"
+  license: AGPL-3.0
+  license_file: LICENSE
+  license_family: GPL
+  summary: PANTHER database annotations.
+
+extra:
+  recipe-maintainers:
+    - acidgenomics
+    - mjsteinbaugh
diff --git a/recipes/r-pathfindr/build.sh b/recipes/r-pathfindr/build.sh
new file mode 100644
index 0000000000000..e19c0e9e0c900
--- /dev/null
+++ b/recipes/r-pathfindr/build.sh
@@ -0,0 +1,6 @@
+#!/bin/bash
+
+export LC_ALL=en_US.UTF-8
+export DISABLE_AUTOBREW=1
+
+${R} CMD INSTALL --build . ${R_ARGS}
diff --git a/recipes/r-pathfindr/meta.yaml b/recipes/r-pathfindr/meta.yaml
new file mode 100644
index 0000000000000..bb794fe4d84d6
--- /dev/null
+++ b/recipes/r-pathfindr/meta.yaml
@@ -0,0 +1,102 @@
+{% set name = "r-pathfindr" %}
+{% set version = "2.4.1" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url:
+    - {{ cran_mirror }}/src/contrib/pathfindR_{{ version }}.tar.gz
+    - {{ cran_mirror }}/src/contrib/Archive/pathfindR/pathfindR_{{ version }}.tar.gz
+  sha256: 031f5dad32ba32bc3084bd63d0c8326c04e82ffb07689546f4e2e33c0db79253
+
+build:
+  number: 0
+  noarch: generic
+  merge_build_host: True  # [win]
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  run_exports:
+    - {{ pin_subpackage("r-pathfindr", max_pin="x") }}
+
+requirements:
+  host:
+    - r-base
+    - openjdk 8.*
+    - bioconductor-annotationdbi
+    - r-dbi
+    - bioconductor-keggrest
+    - bioconductor-kegggraph
+    - bioconductor-ggkegg
+    - r-httr
+    - r-r.utils
+    - r-doparallel
+    - r-foreach
+    - r-fpc
+    - r-ggplot2
+    - r-ggraph
+    - r-ggupset
+    - r-igraph
+    - r-knitr
+    - r-magick
+    - r-msigdbr
+    - bioconductor-org.hs.eg.db
+    - r-pathfindr.data >=2.0
+    - r-rmarkdown
+  run:
+    - r-base
+    - openjdk 8.*
+    - bioconductor-annotationdbi
+    - r-dbi
+    - bioconductor-keggrest
+    - bioconductor-kegggraph
+    - bioconductor-ggkegg
+    - r-httr
+    - r-r.utils
+    - r-doparallel
+    - r-foreach
+    - r-fpc
+    - r-ggplot2
+    - r-ggraph
+    - r-ggupset
+    - r-igraph
+    - r-knitr
+    - r-magick
+    - r-msigdbr
+    - bioconductor-org.hs.eg.db
+    - r-pathfindr.data >=2.0
+    - r-rmarkdown
+
+test:
+  commands:
+    - $R -e "library('pathfindR')"
+
+about:
+  home: "https://github.com/egeulgen/pathfindR"
+  license: MIT
+  summary: 'Enrichment analysis enables researchers to uncover mechanisms underlying a phenotype.
+    However, conventional methods for enrichment analysis do not take into account protein-protein
+    interaction information, resulting in incomplete conclusions. pathfindR is a tool
+    for enrichment analysis utilizing active subnetworks. The main function identifies
+    active subnetworks in a protein-protein interaction network using a user-provided
+    list of genes and associated p values. It then performs enrichment analyses on the
+    identified subnetworks, identifying enriched terms (i.e. pathways or, more broadly,
+    gene sets) that possibly underlie the phenotype of interest. pathfindR also offers
+    functionalities to cluster the enriched terms and identify representative terms
+    in each cluster, to score the enriched terms per sample and to visualize analysis
+    results. The enrichment, clustering and other methods implemented in pathfindR are
+    described in detail in Ulgen E, Ozisik O, Sezerman OU. 2019. pathfindR: An R Package
+    for Comprehensive Identification of Enriched Pathways in Omics Data Through Active
+    Subnetworks. Front. Genet. <doi:10.3389/fgene.2019.00858>.'
+  license_family: MIT
+  license_file:
+    - '{{ environ["PREFIX"] }}/lib/R/share/licenses/MIT'
+    - LICENSE
+  doc_url: "https://egeulgen.github.io/pathfindR/"
+  dev_url: "https://github.com/egeulgen/pathfindR"
+
+extra:
+  recipe-maintainers:
+    - egeulgen
diff --git a/recipes/r-phewas/meta.yaml b/recipes/r-phewas/meta.yaml
index d34d3187ba2e8..20299cbc1494c 100644
--- a/recipes/r-phewas/meta.yaml
+++ b/recipes/r-phewas/meta.yaml
@@ -1,18 +1,20 @@
-{% set version = '0.12.1' %}
+{% set version = '0.99.6' %}
 {% set name = 'PHeWAS' %}
-{% set hash = '7063af0c3759e37e44f4ee2b92e22e579d9c58e15f0a529de593540489878544' %}
+{% set hash = 'd462db49cd32dcbacc8e1f0e4611f1e1de21a7e9e227f0d53a63de16272533c7' %}
 
 package:
   name: 'r-{{ name|lower }}'
   version: '{{ version }}'
 
 source:
-  url: 'https://github.com/{{ name }}/{{ name }}/archive/v0.12.tar.gz'
+  url: 'https://github.com/{{ name }}/{{ name }}/archive/v{{ version }}-1.tar.gz'
   sha256: '{{ hash }}'
 
 build:
-  number: 8
+  number: 0
   skip: true  # [win32]
+  run_exports:
+    - {{ pin_subpackage("r-phewas", max_pin="x.x") }}
 
   rpaths:
     - lib/R/lib/
diff --git a/recipes/r-pipette/meta.yaml b/recipes/r-pipette/meta.yaml
index 8a1ccc5ef4711..3c673788c57bd 100644
--- a/recipes/r-pipette/meta.yaml
+++ b/recipes/r-pipette/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.11.1" %}
+{% set version = "0.15.2" %}
 {% set github = "https://github.com/acidgenomics/r-pipette" %}
 
 package:
@@ -7,14 +7,16 @@ package:
 
 source:
   url: "{{ github }}/archive/v{{ version }}.tar.gz"
-  sha256: fd48cd2fb4aae77ad303c28fddc6853c0e846d8451cd06285a83bc2ffd81cdb1
+  sha256: 80298775063372e1275191ff800ec00b7feb9cc33fdb9afb453826499e3b54c0
 
 build:
-  number: 0
+  number: 1
   noarch: generic
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage('r-pipette', max_pin="x.x") }}
 
 requirements:
   host:
@@ -22,69 +24,65 @@ requirements:
     - r-base
     # Imports:
     - bioconductor-biocgenerics >=0.46.0
-    - bioconductor-biocio >=1.10.0
     - bioconductor-genomicranges >=1.52.0
     - bioconductor-iranges >=2.34.0
     - bioconductor-s4vectors >=0.38.0
-    - r-acidbase >=0.6.16
-    - r-acidcli >=0.2.7
-    - r-acidgenerics >=0.6.7
-    - r-goalie >=0.6.11
-    - r-matrix >=1.6.0
-    - r-syntactic >=0.6.6
+    - r-acidbase >=0.7.2
+    - r-acidcli >=0.3.0
+    - r-acidgenerics >=0.7.5
+    - r-goalie >=0.7.7
+    - r-jsonlite >=1.8.8
+    - r-matrix >=1.6.4
+    - r-syntactic >=0.7.1
+    - r-yaml >=2.3.8
     # Suggests:
     - bioconductor-biocfilecache >=2.8.0
     - bioconductor-biostrings >=2.68.0
     - bioconductor-maftools >=2.16.0
     - bioconductor-rsamtools >=2.16.0
     - bioconductor-rtracklayer >=1.60.0
+    - r-baseset >=0.9.0
     - r-data.table >=1.14.8
     - r-digest >=0.6.33
     - r-httr2 >=0.2.3
-    - r-jsonlite >=1.8.7
     - r-ontologyindex >=2.11
     - r-pzfx >=0.3.0
-    - r-rcurl >=1.98
     - r-readr >=2.1.4
     - r-readxl >=1.4.3
-    - r-rio >=0.5.29
-    - r-stringi >=1.7.12
+    - r-rio >=1.0.1
     - r-tibble >=3.2.1
-    - r-yaml >=2.3.7
   run:
     # Depends:
     - r-base
     # Imports:
     - bioconductor-biocgenerics >=0.46.0
-    - bioconductor-biocio >=1.10.0
     - bioconductor-genomicranges >=1.52.0
     - bioconductor-iranges >=2.34.0
     - bioconductor-s4vectors >=0.38.0
-    - r-acidbase >=0.6.16
-    - r-acidcli >=0.2.7
-    - r-acidgenerics >=0.6.7
-    - r-goalie >=0.6.11
-    - r-matrix >=1.6.0
-    - r-syntactic >=0.6.6
+    - r-acidbase >=0.7.2
+    - r-acidcli >=0.3.0
+    - r-acidgenerics >=0.7.5
+    - r-goalie >=0.7.7
+    - r-jsonlite >=1.8.8
+    - r-matrix >=1.6.4
+    - r-syntactic >=0.7.1
+    - r-yaml >=2.3.8
     # Suggests:
     - bioconductor-biocfilecache >=2.8.0
     - bioconductor-biostrings >=2.68.0
     - bioconductor-maftools >=2.16.0
     - bioconductor-rsamtools >=2.16.0
     - bioconductor-rtracklayer >=1.60.0
+    - r-baseset >=0.9.0
     - r-data.table >=1.14.8
     - r-digest >=0.6.33
     - r-httr2 >=0.2.3
-    - r-jsonlite >=1.8.7
     - r-ontologyindex >=2.11
     - r-pzfx >=0.3.0
-    - r-rcurl >=1.98
     - r-readr >=2.1.4
     - r-readxl >=1.4.3
-    - r-rio >=0.5.29
-    - r-stringi >=1.7.12
+    - r-rio >=1.0.1
     - r-tibble >=3.2.1
-    - r-yaml >=2.3.7
 
 test:
   commands:
diff --git a/recipes/r-presto/meta.yaml b/recipes/r-presto/meta.yaml
new file mode 100644
index 0000000000000..5cf1e0652e250
--- /dev/null
+++ b/recipes/r-presto/meta.yaml
@@ -0,0 +1,54 @@
+{% set version = '1.0.0' %}
+package:
+  name: r-presto
+  version: {{ version|replace("-", "_") }}
+source:
+  url: https://github.com/immunogenomics/presto/archive/31dc97fed5e2e7fc323ae4af62f72181cc51d9a3.tar.gz
+  sha256: 720ef58aba219af03344e0ae0408fc48feda50e6b7f7f4af2251eb24ce1bfb88
+build:
+  script: $R CMD INSTALL --build .
+  run_exports:
+    - {{ pin_subpackage("r-presto", max_pin="x.x.x") }}
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+# Suggests: knitr, rmarkdown, testthat, Seurat, SingleCellExperiment, SummarizedExperiment, broom, BiocStyle, DESeq2
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+  host:
+    - r-base
+    - r-matrix
+    - r-rcpp
+    - r-rcpparmadillo
+    - r-data.table
+    - r-dplyr
+    - r-purrr
+    - r-rlang
+    - r-tibble
+    - r-tidyr
+  run:
+    - r-base
+    - r-matrix
+    - r-rcpp
+    - r-rcpparmadillo
+    - r-data.table
+    - r-dplyr
+    - r-purrr
+    - r-rlang
+    - r-tibble
+    - r-tidyr
+test:
+  commands:
+    - $R -e "library('presto')"
+about:
+  home: https://github.com/immunogenomics/presto
+  license: GPL-3.0-only
+  summary: Scalable implementation of the Wilcoxon rank sum test and auROC statistic. Interfaces
+    to dense and sparse matrices, as well as genomics analysis frameworks Seurat and
+    SingleCellExperiment.
+  license_family: GPL3
+  license_file:
+    - '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
diff --git a/recipes/r-pscbs/meta.yaml b/recipes/r-pscbs/meta.yaml
index dba0c9851e2ea..6b9486d7121bf 100644
--- a/recipes/r-pscbs/meta.yaml
+++ b/recipes/r-pscbs/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '0.66.0' %}
+{% set version = '0.67.0' %}
 
 package:
   name: r-pscbs
@@ -8,48 +8,51 @@ source:
   url:
     - {{ cran_mirror }}/src/contrib/PSCBS_{{ version }}.tar.gz
     - {{ cran_mirror }}/src/contrib/Archive/PSCBS/PSCBS_{{ version }}.tar.gz
-  sha256: 58805636e55e0fd3f57bd4a0e296a8bb3d57a7bdd0fdd5868a73ddc83d173a93
+  sha256: 2695d18d197a3bd729cca0940248ddc1880e4f54da95b9ecc5eda002a715cdbe
 
 build:
   noarch: generic
-  number: 2
+  number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage('r-pscbs', max_pin="x") }}
 
 requirements:
   host:
     - r-base
-    - bioconductor-dnacopy
-    - r-r.cache >=0.13.0
-    - r-r.methodss3 >=1.7.1
-    - r-r.oo >=1.22.0
-    - r-r.utils >=2.8.0
-    - bioconductor-aroma.light
-    - r-future >=1.12.0
-    - r-listenv >=0.7.0
-    - r-matrixstats >=0.54.0
+    - bioconductor-dnacopy >=1.42.0
+    - r-r.cache >=0.16.0
+    - r-r.methodss3 >=1.8.2
+    - r-r.oo >=1.25.0
+    - r-r.utils >=2.12.0
+    - bioconductor-aroma.light >=2.4.0
+    - r-future >=1.28.0
+    - r-listenv >=0.8.0
+    - r-matrixstats >=0.62.0
   run:
     - r-base
-    - bioconductor-dnacopy
-    - r-r.cache >=0.13.0
-    - r-r.methodss3 >=1.7.1
-    - r-r.oo >=1.22.0
-    - r-r.utils >=2.8.0
-    - bioconductor-aroma.light
-    - r-future >=1.12.0
-    - r-listenv >=0.7.0
-    - r-matrixstats >=0.54.0
+    - bioconductor-dnacopy >=1.42.0
+    - r-r.cache >=0.16.0
+    - r-r.methodss3 >=1.8.2
+    - r-r.oo >=1.25.0
+    - r-r.utils >=2.12.0
+    - bioconductor-aroma.light >=2.4.0
+    - r-future >=1.28.0
+    - r-listenv >=0.8.0
+    - r-matrixstats >=0.62.0
 
 test:
   commands:
-    - $R -e "library('PSCBS')"           # [not win]
-    - "\"%R%\" -e \"library('PSCBS')\""  # [win]
+    - $R -e "library('PSCBS')"
 
 about:
   home: https://github.com/HenrikBengtsson/PSCBS
-  license: GPL (>= 2)
+  license: GPL-2.0-or-later
   summary: Segmentation of allele-specific DNA copy number data and detection of regions with
     abnormal copy number within each parental chromosome.  Both tumor-normal paired
     and tumor-only analyses are supported.
   license_family: GPL3
+  license_file:
+    - '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2'
diff --git a/recipes/r-pspecterlib/meta.yaml b/recipes/r-pspecterlib/meta.yaml
new file mode 100644
index 0000000000000..12969788a83f7
--- /dev/null
+++ b/recipes/r-pspecterlib/meta.yaml
@@ -0,0 +1,88 @@
+{% set name = "pspecterlib" %}
+{% set version = "1.1.0" %}
+{% set github = "https://github.com/EMSL-Computing/pspecterlib" %}
+
+package:
+  name: "r-{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "{{ github }}/archive/refs/tags/{{ version }}.tar.gz"
+  sha256: 8ca6c456365f815bb1c80feecca5bbb8d32e785fab2a1a7be06574c1e29bbcd2
+
+build:
+  number: 0
+  noarch: generic
+  rpaths:
+    - lib/R/lib/
+    - lib/
+  script: R CMD INSTALL --build . 
+  run_exports:
+    - {{ pin_subpackage("r-pspecterlib", max_pin="x.x") }}
+  
+requirements:
+  host:
+    - r-base >=4.2
+    - bioconductor-rhdf5
+    - bioconductor-mzr
+    - bioconductor-msnbase
+    - r-lsa
+    - r-seqinr
+    - r-dplyr
+    - r-reshape2
+    - r-gtools
+    - r-readxl
+    - r-data.table
+    - r-plotly
+    - r-ggplot2
+    - r-magrittr
+    - r-purrr
+    - r-tidyr
+    - r-htmltools
+    - r-rcolorbrewer
+    - r-isopat
+    - r-chnosz
+    - r-cairo
+    - r-rmarkdown
+    - r-knitr
+    - bioconductor-rawrr
+  run:
+    - r-base >=4.2
+    - bioconductor-rhdf5
+    - bioconductor-mzr
+    - bioconductor-msnbase
+    - r-lsa
+    - r-seqinr
+    - r-dplyr
+    - r-reshape2
+    - r-gtools
+    - r-readxl
+    - r-data.table
+    - r-plotly
+    - r-ggplot2
+    - r-magrittr
+    - r-purrr
+    - r-tidyr
+    - r-htmltools
+    - r-rcolorbrewer
+    - r-isopat
+    - r-chnosz
+    - r-cairo
+    - r-rmarkdown
+    - r-knitr
+    - bioconductor-rawrr
+
+test:
+  commands:
+    - $R -e "library('pspecterlib')"
+
+about:
+  home: "{{ github }}"
+  license_file: license.txt
+  license: BSD-2-Clause
+  summary: Proteomics R package for matching peaks in digested and intact proteomics 
+
+extra:
+  recipe-maintainers:
+    - hechth
+
diff --git a/recipes/r-quilt/build.sh b/recipes/r-quilt/build.sh
new file mode 100644
index 0000000000000..b0bb175fa394d
--- /dev/null
+++ b/recipes/r-quilt/build.sh
@@ -0,0 +1,10 @@
+#!/bin/bash
+
+export LC_ALL=C.UTF-8
+export LANG=C.UTF-8
+
+cp $SRC_DIR/QUILT.R $PREFIX/bin/
+cd $SRC_DIR/QUILT
+
+$R CMD INSTALL --build --install-tests .
+
diff --git a/recipes/r-quilt/meta.yaml b/recipes/r-quilt/meta.yaml
index db22afe72d266..75db7688a7028 100644
--- a/recipes/r-quilt/meta.yaml
+++ b/recipes/r-quilt/meta.yaml
@@ -1,17 +1,18 @@
-{% set version = "1.0.4" %}
-{% set sha256 = "8c78c0913a50a46a135d4b527a8069f8802be682516dfbfcdf046e36e436dcfd" %}
+{% set version = "1.0.5" %}
+{% set sha256 = "88f46a0c0f54260b8df9f150b0cf9bdedba6f9408bb7da36318055f2a9036266" %}
 
 package:
   name: r-quilt
   version: '{{ version }}'
 
 source:
-  url: https://github.com/rwdavies/quilt/releases/download/{{ version }}/QUILT_{{ version }}.tar.gz
-  sha256: '{{ sha256 }}'
+  - url: https://github.com/rwdavies/QUILT/archive/refs/tags/{{ version }}.tar.gz
+    sha256: '{{ sha256 }}'
 
 build:
-  number: 2
-  script: '$R CMD INSTALL --build --install-tests .'
+  number: 0
+  run_exports:
+        - {{ pin_subpackage('r-quilt', max_pin="1") }}
 
 requirements:
   build:
@@ -36,7 +37,8 @@ requirements:
     - r-rcpparmadillo >=0.8.600.0.0
     - r-data.table >=1.11.8
     - r-rrbgen >=0.0.6
-    - r-stitch >=1.6.6    
+    - r-stitch >=1.6.6
+    - r-optparse    
     - xz
     - gmp
     - mpfr
@@ -50,7 +52,7 @@ requirements:
 test:
   commands:
     - $R -e "library('QUILT');  testthat::test_package('QUILT', stop_on_failure = TRUE, stop_on_warning = TRUE, filter = 'acceptance-one', reporter = 'summary')"
-
+    - 'QUILT.R --help'
 about:
   home: https://github.com/rwdavies/quilt
   license: GPL-3.0-only
diff --git a/recipes/r-ramclustr/meta.yaml b/recipes/r-ramclustr/meta.yaml
index 7706f138a70e8..ac3e72aa6403e 100644
--- a/recipes/r-ramclustr/meta.yaml
+++ b/recipes/r-ramclustr/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '1.3.0' %}
+{% set version = '1.3.1' %}
 
 package:
   name: r-ramclustr
@@ -8,7 +8,7 @@ source:
   url:
     - {{ cran_mirror }}/src/contrib/RAMClustR_{{ version }}.tar.gz
     - {{ cran_mirror }}/src/contrib/Archive/RAMClustR/RAMClustR_{{ version }}.tar.gz
-  sha256: 2900206033fcbca4a74e82a76144d7186a4842783c462efa0f92aa4f5b7c8082
+  sha256: cd1154bb1411346a5426a919b2d374daedaabc08ce094b6ebed5a897c1fc9156
 
 build:
   number: 1
@@ -16,6 +16,8 @@ build:
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage('r-ramclustr', max_pin="x") }}
 
 requirements:
   host:
@@ -23,18 +25,16 @@ requirements:
     - r-biocmanager
     - r-interpretmsspectrum
     - bioconductor-msnbase
-    - r-readxl 
+    - r-readxl
     - r-rcurl
     - r-dynamictreecut
     - r-e1071
     - r-fastcluster
-    - r-ff
     - r-ggplot2
     - r-gplots
     - r-httr
     - r-jsonlite
     - bioconductor-pcamethods
-    - bioconductor-preprocesscore
     - r-stringi
     - r-stringr
     - r-webchem
@@ -44,18 +44,16 @@ requirements:
     - r-biocmanager
     - r-interpretmsspectrum
     - bioconductor-msnbase
-    - r-readxl 
+    - r-readxl
     - r-rcurl
     - r-dynamictreecut
     - r-e1071
     - r-fastcluster
-    - r-ff
     - r-ggplot2
     - r-gplots
     - r-httr
     - r-jsonlite
     - bioconductor-pcamethods
-    - bioconductor-preprocesscore
     - r-stringi
     - r-stringr
     - r-webchem
diff --git a/recipes/r-restfulr/meta.yaml b/recipes/r-restfulr/meta.yaml
index 8ecdcc080f58a..8ff3b6baf8689 100644
--- a/recipes/r-restfulr/meta.yaml
+++ b/recipes/r-restfulr/meta.yaml
@@ -11,10 +11,12 @@ source:
   sha256: 40ff8f1fb2987af2223e1a855bb1680c5ce2143fbce7ebc42f1edb291f80e692
 
 build:
-  number: 3
+  number: 4
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage("r-restfulr", max_pin="x.x") }}
 
 requirements:
   build:
@@ -38,6 +40,9 @@ test:
   commands:
     - $R -e "library('restfulr')"
 
+extra:
+  additional-platforms:
+    - linux-aarch64
 about:
   home: https://CRAN.R-project.org/package=restfulr
   license: Artistic-2.0
diff --git a/recipes/r-saige/meta.yaml b/recipes/r-saige/meta.yaml
index 3d7a1600045da..bfeb27810aad6 100644
--- a/recipes/r-saige/meta.yaml
+++ b/recipes/r-saige/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "r-saige" %}
-{% set version = "1.1.9" %}
-{% set vcommit = "5ebd20ac46b58973bbbd02dadad12b293f236b24" %}
+{% set version = "1.3.1" %}
+{% set vcommit = "92b6c6cd7f552d340cfc4b3b395574fbc598ee2e" %}
 
 package:
   name: {{ name|lower }}
@@ -8,15 +8,17 @@ package:
 
 source:
   url: https://github.com/saigegit/SAIGE/archive/{{ vcommit }}.tar.gz
-  sha256: ac032d10d52ea644279097fad68e0d708892b444d42ebd856b34a6f2faaaba61
+  sha256: c9d7da349c8eb3d6731ec8f7a989614f5d7a2e04f6ac058211cce8f4b0e60d3d
   patches:
     - patches/0001-use-shared-libs-in-makevars.patch
 
 build:
-  number: 3
+  number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage('r-saige', max_pin="x") }}
 
 requirements:
   build:
diff --git a/recipes/r-scevan/build.sh b/recipes/r-scevan/build.sh
new file mode 100644
index 0000000000000..c3ea0d7102a89
--- /dev/null
+++ b/recipes/r-scevan/build.sh
@@ -0,0 +1,4 @@
+#!/bin/bash
+R -e "library(devtools)"
+R -e "devtools::install_github('miccec/yaGST')"
+R CMD INSTALL --build .
diff --git a/recipes/r-scevan/meta.yaml b/recipes/r-scevan/meta.yaml
new file mode 100644
index 0000000000000..bb1703e201397
--- /dev/null
+++ b/recipes/r-scevan/meta.yaml
@@ -0,0 +1,64 @@
+package:
+  name: r-scevan
+  version: 1.0.1
+
+source:
+  url: https://github.com/AntonioDeFalco/SCEVAN/archive/refs/tags/v1.0.1.tar.gz  
+  sha256: 7558d31282c36418db3960b3edb9cb9815db14b0a48d8882287e11f752dfeab1       
+
+build:
+  number: 0
+  noarch: generic  # Specify that the package is noarch
+  run_exports: '{{ pin_compatible("r-scevan", max_pin="x.x") }}'
+  rpaths:
+    - lib/R/lib
+    - lib
+
+requirements:
+  host:
+    - r-base
+    - r-remotes
+    - r-devtools
+    - r-rcpp
+    - r-paralleldist
+    - r-pheatmap
+    - r-forcats
+    - r-dplyr
+    - bioconductor-fgsea
+    - r-cluster
+    - r-ggplot2
+    - r-Rtsne
+    - bioconductor-scran
+    - r-ape
+    - bioconductor-ggtree
+    - r-tidytree
+    - r-ggrepel
+    - r-optparse
+  run:
+    - r-base
+    - r-devtools
+    - r-paralleldist
+    - r-pheatmap
+    - r-forcats
+    - r-dplyr
+    - bioconductor-fgsea
+    - r-cluster
+    - r-ggplot2
+    - r-Rtsne
+    - bioconductor-scran
+    - r-ape
+    - bioconductor-ggtree
+    - r-tidytree
+    - r-ggrepel
+    - r-optparse
+
+test:
+  commands:
+    - $R -e "library(SCEVAN)"
+
+about:
+  home: https://github.com/AntonioDeFalco/SCEVAN/
+  license: GPL-3.0-only
+  license_family: GPL3
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+  summary: Single CEll Variational Aneuploidy aNalysis
diff --git a/recipes/r-seqmagick/meta.yaml b/recipes/r-seqmagick/meta.yaml
index dd1ab5449d137..72e09c9aa4e16 100644
--- a/recipes/r-seqmagick/meta.yaml
+++ b/recipes/r-seqmagick/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '0.1.6' %}
+{% set version = '0.1.7' %}
 
 package:
   name: r-seqmagick
@@ -8,24 +8,28 @@ source:
   url:
     - {{ cran_mirror }}/src/contrib/seqmagick_{{ version }}.tar.gz
     - {{ cran_mirror }}/src/contrib/Archive/seqmagick/seqmagick_{{ version }}.tar.gz
-  sha256: 4f872c7b3f39e5b21a5820478102e0b39ecf5d7e2a12dfba263568ab250ab1f5
+  sha256: 95cf80c9c0a266e07cf7b124de105818c58f8f843f70ab25e0877a910211b8e5
 
 build:
-  number: 1
+  number: 0
   noarch: generic
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage('r-seqmagick', max_pin="x.x") }}
 
 requirements:
   host:
     - r-base
     - bioconductor-biostrings
     - r-magrittr
+    - r-yulab.utils >0.1.1
   run:
     - r-base
     - bioconductor-biostrings
     - r-magrittr
+    - r-yulab.utils >0.1.1
 
 test:
   commands:
diff --git a/recipes/r-seurat-data/meta.yaml b/recipes/r-seurat-data/meta.yaml
new file mode 100644
index 0000000000000..da945540fea2a
--- /dev/null
+++ b/recipes/r-seurat-data/meta.yaml
@@ -0,0 +1,42 @@
+{% set version = '0.2.1' %}
+package:
+  name: r-seurat-data
+  version: {{ version|replace("-", "_") }}
+source:
+  url: https://github.com/satijalab/seurat-data/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 134b0dbc113e3533494461646c8362189b2bdf8940050de3561bcd488d905438
+build:
+  script: $R CMD INSTALL --build .
+  run_exports:
+    - {{ pin_subpackage("r-seurat-data", max_pin="x.x.x") }}
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+requirements:
+  build:
+  host:
+    - r-base
+    - r-cli
+    - r-crayon
+    - r-rappdirs
+  run:
+    - r-base
+    - r-cli
+    - r-crayon
+    - r-rappdirs
+test:
+  commands:
+    - $R -e "library('SeuratData')"
+about:
+  home: http://www.satijalab.org/seurat
+  dev_url: https://github.com/satijalab/seurat-data
+  license: GPL-3.0-only
+  summary: Single cell RNA sequencing datasets can be large, consisting of matrices that contain
+    expression data for several thousand features across several thousand cells. This
+    package is designed to easily install, manage, and learn about various single-cell
+    datasets, provided Seurat objects and distributed as independent packages.
+  license_family: GPL3
+  license_file:
+    - '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+    - LICENSE
diff --git a/recipes/r-seurat-disk/meta.yaml b/recipes/r-seurat-disk/meta.yaml
new file mode 100644
index 0000000000000..6cda8484ac46d
--- /dev/null
+++ b/recipes/r-seurat-disk/meta.yaml
@@ -0,0 +1,59 @@
+{% set version = '0.0.0.9021' %}
+package:
+  name: r-seurat-disk
+  version: {{ version|replace("-", "_") }}
+source:
+  url: https://github.com/mojaveazure/seurat-disk/archive/877d4e18ab38c686f5db54f8cd290274ccdbe295.tar.gz
+  sha256: d2d6b6604e8a1f6de90956d0401d34b51b07b30671a445d0e06876f2dec999ac
+build:
+  script: $R CMD INSTALL --build .
+  run_exports:
+    - {{ pin_subpackage("r-seurat-disk", max_pin="x.x.x.x") }}
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+requirements:
+  build:
+  host:
+    - r-base
+    - r-matrix >=1.2.18
+    - r-r6 >=2.4.1
+    - r-seurat >=3.2.0
+    - r-seuratobject >=4.0.0
+    - r-cli >=2.0.1
+    - r-crayon >=1.3.4
+    - r-hdf5r >=1.3.0
+    - r-rlang >=0.4.4
+    - r-stringi >=1.4.6
+    - r-withr >=2.1.2
+  run:
+    - r-base
+    - r-matrix >=1.2.18
+    - r-r6 >=2.4.1
+    - r-seurat >=3.2.0
+    - r-seuratobject >=4.0.0
+    - r-cli >=2.0.1
+    - r-crayon >=1.3.4
+    - r-hdf5r >=1.3.0
+    - r-rlang >=0.4.4
+    - r-stringi >=1.4.6
+    - r-withr >=2.1.2
+test:
+  commands:
+    - '$R -e "library(''SeuratDisk'')"'
+about:
+  home: https://mojaveazure.github.io/seurat-disk/
+  dev_url: https://github.com/mojaveazure/seurat-disk
+  license: GPL-3.0-only
+  summary: The h5Seurat file format is specifically designed for the storage and analysis of
+    multi-modal single-cell and spatially-resolved expression experiments, for example,
+    from CITE-seq or 10X Visium technologies. It holds all molecular information and
+    associated metadata, including (for example) nearest-neighbor graphs, dimensional
+    reduction information, spatial coordinates and image data, and cluster labels. We
+    also support rapid and on-disk conversion between h5Seurat and AnnData objects,
+    with the goal of enhancing interoperability between Seurat and Scanpy.
+  license_family: GPL3
+  license_file:
+    - '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
+    - LICENSE
diff --git a/recipes/r-shinyngs/meta.yaml b/recipes/r-shinyngs/meta.yaml
index dc18fa7dad861..475dbdab60a37 100644
--- a/recipes/r-shinyngs/meta.yaml
+++ b/recipes/r-shinyngs/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '1.7.2' %}
+{% set version = '1.8.8' %}
 {% set d3heatmap_version = '0.6.1.2' %}
 
 package:
@@ -7,14 +7,14 @@ package:
 
 source:
   - url: https://github.com/pinin4fjords/shinyngs/archive/refs/tags/v{{ version }}.tar.gz
-    sha256: "8e8f312be8d4d9ec9b2b6e89c8d62f4a3ec2f0fbffc70f1839bde15ea0bf4034"
+    sha256: "832562221f6eca5ed2571c7b3f177e906b01140a3ace2bb5e24ce1d4a87a8769"
     folder: shinyngs
   - url: https://github.com/cran/d3heatmap/archive/refs/tags/{{ d3heatmap_version }}.tar.gz 
     sha256: "bda213c4d335b199c38a48cb8e60027c929a8ba8ef6e14dc7de692967777c25a"
     folder: d3heatmap
 
 build:
-  number: 2
+  number: 0
   noarch: generic
 
   # This is required to make R link correctly on Linux.
@@ -25,6 +25,9 @@ build:
   script_env:
     - D3HEATMAP_VERSION={{ d3heatmap_version }}
 
+  run_exports:
+    - {{ pin_subpackage("r-shinyngs", max_pin="x") }}
+
 requirements:
   host:
     - r-base64enc
diff --git a/recipes/r-sigminer/meta.yaml b/recipes/r-sigminer/meta.yaml
index 7038143ee19a0..8b1838e6de8da 100644
--- a/recipes/r-sigminer/meta.yaml
+++ b/recipes/r-sigminer/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '2.2.0' %}
+{% set version = '2.3.1' %}
 
 package:
   name: r-sigminer
@@ -8,13 +8,15 @@ source:
   url:
     - {{ cran_mirror }}/src/contrib/sigminer_{{ version }}.tar.gz
     - {{ cran_mirror }}/src/contrib/Archive/sigminer/sigminer_{{ version }}.tar.gz
-  sha256: b5d5b4155c70ebfd69ad002607de08d6176ad5cb05a1e9de142289dd656cf72d
+  sha256: b2836c76a52f7c7add8756afb09dc50ab31d736b4640b803bee57b6caec1953b
 
 build:
-  number: 2
+  number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage('r-sigminer', max_pin="x") }}
 
 requirements:
   build:
diff --git a/recipes/r-signac/meta.yaml b/recipes/r-signac/meta.yaml
index 43c37ca08929b..ed619910d09f3 100644
--- a/recipes/r-signac/meta.yaml
+++ b/recipes/r-signac/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '1.10.0' %}
+{% set version = '1.13.0' %}
 
 package:
   name: r-signac
@@ -8,13 +8,15 @@ source:
   url:
     - {{ cran_mirror }}/src/contrib/Signac_{{ version }}.tar.gz
     - {{ cran_mirror }}/src/contrib/Archive/Signac/Signac_{{ version }}.tar.gz
-  sha256: 75c274dfc49b0f1478adfdd85e9acbf04d3fae38f2ebe31658a1ba17a7880994
+  sha256: d9b4103c6437391834b2d9e2aab8829f186b6e09d070dfe2a66cc12583241b2a
 
 build:
-  number: 2
+  number: 0
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage("r-signac", max_pin="x") }}
 
 requirements:
   build:
diff --git a/recipes/r-stitch/conda_build_config.yaml b/recipes/r-stitch/conda_build_config.yaml
new file mode 100644
index 0000000000000..05918073c06fa
--- /dev/null
+++ b/recipes/r-stitch/conda_build_config.yaml
@@ -0,0 +1,4 @@
+c_compiler_version:
+  - 12
+cxx_compiler_version:
+  - 12
diff --git a/recipes/r-stitch/meta.yaml b/recipes/r-stitch/meta.yaml
index 006cc09cf967a..292b74ce3960c 100644
--- a/recipes/r-stitch/meta.yaml
+++ b/recipes/r-stitch/meta.yaml
@@ -1,17 +1,22 @@
-{% set version = "1.6.8" %}
-{% set sha256 = "a1b7c3fe273f2f2dee0bfb34f0afc95aeab7a92333d3bc15679abbca6dc553f8" %}
+{% set version = "1.6.10" %}
+{% set sha256_package = "1e432655e299bb5941104c2645ed3a6b3c2c4a44b583c5aaa2b20d2538875f9e" %}
+{% set sha256_script = "0c61d79cf519e5c5ae33807725577da3d1599bcc89413c3a6bce3fb7c99090c7" %}
 
 package:
   name: r-stitch
   version: '{{ version }}'
 
 source:
-  url: https://github.com/rwdavies/stitch/releases/download/{{ version }}/STITCH_{{ version }}.tar.gz
-  sha256: '{{ sha256 }}'
+  - url: https://github.com/rwdavies/stitch/releases/download/{{ version }}/STITCH_{{ version }}.tar.gz
+    sha256: '{{ sha256_package }}'
+  - url: https://raw.githubusercontent.com/rwdavies/STITCH/{{ version }}/STITCH.R
+    sha256: '{{ sha256_script }}'
 
 build:
-  number: 2
-  script: '$R CMD INSTALL --build --install-tests .'
+  number: 0
+  script: 
+    - 'mkdir -p $PREFIX/bin && cp STITCH.R $PREFIX/bin'
+    - '$R CMD INSTALL --build --install-tests .'
 
 requirements:
   build:
@@ -31,14 +36,15 @@ requirements:
     - gmp
     - mpfr
     - mpc >=1.1.0
-    - libblas    
+    - libblas
     - zlib
   run:
-    - r-base  
+    - r-base
     - r-rcpp >=0.12.18
     - r-rcpparmadillo >=0.8.600.0.0
     - r-data.table >=1.11.8
     - r-rrbgen >=0.0.6
+    - r-optparse
     - xz
     - gmp
     - mpfr
@@ -46,12 +52,13 @@ requirements:
     - r-testthat >=2.0.0
     - htslib >=1.4
     - samtools >=1.4
-    - rsync  
+    - rsync
     - zlib
 
 test:
   commands:
     - $R -e "library('STITCH');  testthat::test_package('STITCH', stop_on_failure = TRUE, stop_on_warning = TRUE, filter = 'acceptance-one', reporter = 'summary')"
+    - 'STITCH.R --help'
 
 about:
   home: https://github.com/rwdavies/stitch
diff --git a/recipes/r-syntactic/meta.yaml b/recipes/r-syntactic/meta.yaml
index a0717c3369e8c..26f0dde275c31 100644
--- a/recipes/r-syntactic/meta.yaml
+++ b/recipes/r-syntactic/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.6.6" %}
+{% set version = "0.7.1" %}
 {% set github = "https://github.com/acidgenomics/r-syntactic" %} 
 
 package:
@@ -7,35 +7,31 @@ package:
 
 source:
   url: "{{ github }}/archive/v{{ version }}.tar.gz"
-  sha256: a462665a69f22fe2073c030f2a1f4206487fafd96f8fdae5864ef8a61fbb8171
+  sha256: d2409c5fa7a57748f8f7f548ea2d083ef0a1765ef13f95daa2a9ebe40777cca1
 
 build:
   noarch: generic
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('r-syntactic', max_pin="x.x") }}
 
 requirements:
   host:
     # Depends:
     - r-base
     # Imports:
-    - r-acidgenerics >=0.6.6
-    - r-goalie >=0.6.8
+    - r-acidgenerics >=0.7.0
+    - r-goalie >=0.7.0
     # Suggests:
-    - r-acidbase >=0.6.12
-    - r-acidcli >=0.2.7
     - r-stringi >=1.7.12
-    - r-stringr >=1.5.0
   run:
     # Depends:
     - r-base
     # Imports:
-    - r-acidgenerics >=0.6.6
-    - r-goalie >=0.6.8
+    - r-acidgenerics >=0.7.0
+    - r-goalie >=0.7.0
     # Suggests:
-    - r-acidbase >=0.6.12
-    - r-acidcli >=0.2.7
     - r-stringi >=1.7.12
-    - r-stringr >=1.5.0
 
 test:
   commands:
diff --git a/recipes/r-tinyarray/meta.yaml b/recipes/r-tinyarray/meta.yaml
index 0c7d646c288b7..2c082b48c3bfe 100644
--- a/recipes/r-tinyarray/meta.yaml
+++ b/recipes/r-tinyarray/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '2.3.0' %}
+{% set version = '2.3.3' %}
 
 package:
   name: r-tinyarray
@@ -8,14 +8,16 @@ source:
   url:
     - {{ cran_mirror }}/src/contrib/tinyarray_{{ version }}.tar.gz
     - {{ cran_mirror }}/src/contrib/Archive/tinyarray/tinyarray_{{ version }}.tar.gz
-  sha256: 6108cbf0cc3bfe8625f85b2e9e23683d6373ae40f4b312aefb4937b16f047260
+  sha256: 85388351a5811cb6df37a20f3233ed9e1f391800d16a4d56257f1094af44eb00
 
 build:
-  number: 1
+  number: 0
   noarch: generic
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage('r-tinyarray', max_pin="x") }}
 
 requirements:
   host:
@@ -23,31 +25,27 @@ requirements:
     - r-biocmanager
     - bioconductor-clusterprofiler
     - r-dplyr
+    - r-ggplot2
     - bioconductor-limma
-    - bioconductor-org.hs.eg.db
-    - r-stringr
-    - r-tibble
+    - r-patchwork
     - r-pheatmap
-    - r-ggplot2
+    - r-stringr
     - r-survival
-    - r-survminer    
-    - r-patchwork
-    - r-magrittr
+    - r-survminer
+    - r-tibble
   run:
     - r-base
     - r-biocmanager
     - bioconductor-clusterprofiler
     - r-dplyr
+    - r-ggplot2
     - bioconductor-limma
-    - bioconductor-org.hs.eg.db
-    - r-stringr
-    - r-tibble
+    - r-patchwork
     - r-pheatmap
-    - r-ggplot2
+    - r-stringr
     - r-survival
-    - r-survminer    
-    - r-patchwork
-    - r-magrittr
+    - r-survminer
+    - r-tibble
 
 test:
   commands:
diff --git a/recipes/r-workflowscriptscommon/meta.yaml b/recipes/r-workflowscriptscommon/meta.yaml
index ba57f6c6510d5..9ef3a8f478dcf 100644
--- a/recipes/r-workflowscriptscommon/meta.yaml
+++ b/recipes/r-workflowscriptscommon/meta.yaml
@@ -1,19 +1,23 @@
-{% set version = '0.0.8' %}
+{% set name = "r-workflowscriptscommon" %}
+{% set version = "0.0.8" %}
 
 package:
-  name: r-workflowscriptscommon
+  name: {{ name }}
   version: {{ version }}
 
 source:
-    url: https://github.com/ebi-gene-expression-group/workflowscriptscommon/archive/v{{ version }}.tar.gz
-    sha256: 6a5685d2c754f7d639a11e0dfcc203ce3bab16c0ba0886a3a5b993811964e7a3 
+  url: https://github.com/ebi-gene-expression-group/workflowscriptscommon/archive/v{{ version }}.tar.gz
+  sha256: 6a5685d2c754f7d639a11e0dfcc203ce3bab16c0ba0886a3a5b993811964e7a3 
 
 build:
-  number: 4
+  number: 5
   noarch: generic
+  script: ${R} CMD INSTALL --build . ${R_ARGS}
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage("r-workflowscriptscommon", max_pin="x.x") }}
 
 requirements:
   host:
@@ -27,11 +31,11 @@ test:
     - $R -e "library('workflowscriptscommon')"
 
 about:
-  home: https://github.com/ebi-gene-expression-group/workflowscriptscommon
-  dev_url: https://github.com/ebi-gene-expression-group/workflowscriptscommon
-  license: GPL-3
+  home: "https://github.com/ebi-gene-expression-group/workflowscriptscommon"
+  dev_url: "https://github.com/ebi-gene-expression-group/workflowscriptscommon"
+  license: "GPL-3.0-or-later"
   summary: Common functions for making R function wapper scripts. Functions in R
       packages are hard to call when building workflows outside of R, so this
       package is used by other packages (e.g. r-seurat-scripts) to add sets of
       simple wrappers with robust argument parsing. 
-  license_family: GPL
+  license_family: GPL3
diff --git a/recipes/r-wormbase/meta.yaml b/recipes/r-wormbase/meta.yaml
index a1da5c9edf406..bb2667d5a1a98 100644
--- a/recipes/r-wormbase/meta.yaml
+++ b/recipes/r-wormbase/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.4.1" %}
+{% set version = "0.5.0" %}
 {% set github = "https://github.com/acidgenomics/r-wormbase" %}
 
 package:
@@ -7,48 +7,47 @@ package:
 
 source:
   url: "{{ github }}/archive/v{{ version }}.tar.gz"
-  sha256: 73d222e37d90331a8d37e3aeae9efc9b88646cdeb7d394a698334eed8a13ae2a
+  sha256: dce59a925b8fa24c4de87747e303333eb0a9f79a0f0dde130d8f242cb17809a7
 
 build:
   number: 0
   noarch: generic
-  rpaths:
-    - lib/R/lib/
-    - lib/
+  run_exports:
+    - {{ pin_subpackage('r-wormbase', max_pin="x.x") }}
 
 requirements:
   host:
     # Depends:
     - r-base
     # Imports:
-    - bioconductor-biocgenerics >=0.44.0
-    - bioconductor-iranges >=2.32.0
-    - bioconductor-s4vectors >=0.36.0
-    - r-acidbase >=0.6.16
-    - r-acidcli >=0.2.7
-    - r-acidgenerics >=0.6.7
-    - r-acidplyr >=0.3.10
-    - r-goalie >=0.6.10
+    - bioconductor-biocgenerics >=0.46.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.2.8
+    - r-acidgenerics >=0.6.13
+    - r-acidplyr >=0.4.3
+    - r-goalie >=0.7.0
+    - r-pipette >=0.14.0
+    - r-syntactic >=0.6.7
+    # Suggests:
     - r-httr2 >=0.2.3
-    - r-pipette >=0.10.10
-    - r-stringi >=1.7.12
-    - r-syntactic >=0.6.6
   run:
     # Depends:
     - r-base
     # Imports:
-    - bioconductor-biocgenerics >=0.44.0
-    - bioconductor-iranges >=2.32.0
-    - bioconductor-s4vectors >=0.36.0
-    - r-acidbase >=0.6.16
-    - r-acidcli >=0.2.7
-    - r-acidgenerics >=0.6.7
-    - r-acidplyr >=0.3.10
-    - r-goalie >=0.6.10
+    - bioconductor-biocgenerics >=0.46.0
+    - bioconductor-iranges >=2.34.0
+    - bioconductor-s4vectors >=0.38.0
+    - r-acidbase >=0.7.0
+    - r-acidcli >=0.2.8
+    - r-acidgenerics >=0.6.13
+    - r-acidplyr >=0.4.3
+    - r-goalie >=0.7.0
+    - r-pipette >=0.14.0
+    - r-syntactic >=0.6.7
+    # Suggests:
     - r-httr2 >=0.2.3
-    - r-pipette >=0.10.10
-    - r-stringi >=1.7.12
-    - r-syntactic >=0.6.6
 
 test:
   commands:
diff --git a/recipes/rabbitqcplus/build.sh b/recipes/rabbitqcplus/build.sh
new file mode 100644
index 0000000000000..008b8deee4fb0
--- /dev/null
+++ b/recipes/rabbitqcplus/build.sh
@@ -0,0 +1,10 @@
+#!/bin/bash
+
+export CC=${CC:-gcc}
+export CXX=${CXX:-g++}
+
+export LIBRARY_DIRS="$LIBRARY_DIRS $PREFIX/lib"
+
+make BIOCONDA=1
+make install
+
diff --git a/recipes/rabbitqcplus/meta.yaml b/recipes/rabbitqcplus/meta.yaml
new file mode 100644
index 0000000000000..d85b61e5b355c
--- /dev/null
+++ b/recipes/rabbitqcplus/meta.yaml
@@ -0,0 +1,35 @@
+{% set version = "2.2.9" %}
+
+package:
+  name: rabbitqcplus
+  version: {{ version }}
+
+source:
+  url: https://github.com/RabbitBio/RabbitQCPlus/archive/refs/tags/{{ version }}.tar.gz
+  sha256: 076cb1e11046d5a41464f74d7df363e2ea337e2cf3ad8e8b0712c5c7df746466
+
+build:
+  number: 1
+  skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage("rabbitqcplus", max_pin="x.x") }}
+
+requirements:
+  build:
+    - {{ compiler('cxx') }}
+    - {{ compiler('c') }}
+    - make
+  host:
+    - zlib 
+  run:
+    - zlib
+
+test:
+  commands:
+    - rabbitqcplus --help
+
+about:
+  home: https://github.com/RabbitBio/RabbitQCPlus
+  license: MIT
+  license_file: LICENSE
+  summary: RabbitQCPlus is an efficient quality control tool for sequencing data
diff --git a/recipes/rabbittclust/build.sh b/recipes/rabbittclust/build.sh
new file mode 100644
index 0000000000000..53df4213b3f69
--- /dev/null
+++ b/recipes/rabbittclust/build.sh
@@ -0,0 +1,40 @@
+#!/bin/bash
+
+export CC=${CC:-gcc}
+export CXX=${CXX:-g++}
+
+#./install.sh
+cd RabbitSketch &&
+mkdir -p build && cd build &&
+cmake -DCXXAPI=ON -DCMAKE_INSTALL_PREFIX=. .. &&
+make -j ${CPU_COUNT} && make install &&
+cd ../../ &&
+
+#make rabbitFX library
+cd RabbitFX && 
+mkdir -p build && cd build &&
+cmake -DCMAKE_INSTALL_PREFIX=. .. &&
+make -j ${CPU_COUNT} && make install && 
+cd ../../ &&
+
+#compile the clust-greedy
+mkdir -p build && cd build &&
+cmake -DUSE_RABBITFX=ON -DUSE_GREEDY=ON .. && 
+make -j ${CPU_COUNT} && make install &&
+cd ../ &&
+
+#compile the clust-mst
+cd build &&
+cmake -DUSE_RABBITFX=ON -DUSE_GREEDY=OFF .. &&
+make -j ${CPU_COUNT} && make install &&
+cd ../ 
+
+mkdir -p $PREFIX/bin
+cp clust-mst $PREFIX/bin/
+cp clust-greedy $PREFIX/bin/
+
+#export LIBRARY_DIRS="$LIBRARY_DIRS $PREFIX/lib"
+
+#make BIOCONDA=1
+#make install
+
diff --git a/recipes/rabbittclust/meta.yaml b/recipes/rabbittclust/meta.yaml
new file mode 100644
index 0000000000000..10eb7fb0f5e1a
--- /dev/null
+++ b/recipes/rabbittclust/meta.yaml
@@ -0,0 +1,41 @@
+{% set version = "2.3.0" %}
+
+package:
+  name: rabbittclust
+  version: {{ version }}
+
+source:
+  url: https://github.com/RabbitBio/RabbitTClust/releases/download/v.2.3.0/RabbitTClust_avx2_v.2.3.0.tar.gz
+  sha256: f427b55c46fc4121dec33c2069a0515729bbfd08c8b787e3ef8a0ea2ced9ed4b
+  
+
+build:
+  number: 0
+  skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage('rabbittclust', max_pin='x.x') }}
+  # script: build.sh
+  # run_exports:
+  #   - {{ pin_subpackage("clust-mst", max_pin="x.x") }}
+  #   - {{ pin_subpackage("clust-greedy", max_pin="x.x") }}
+
+requirements:
+  build:
+    - {{ compiler('cxx') }}
+    - {{ compiler('c') }}
+    - cmake
+    - make
+  host:
+    - zlib 
+  run:
+
+test:
+  commands:
+    - clust-mst --help
+    - clust-greedy --help
+
+about:
+  home: https://github.com/RabbitBio/RabbitTClust
+  license: https://github.com/RabbitBio/RabbitTClust/blob/main/LICENSE.txt
+  license_file: LICENSE.txt
+  summary: RabbitTClust enables fast clustering analysis of millions bacteria genomes with MinHash sketches
diff --git a/recipes/rabies/meta.yaml b/recipes/rabies/meta.yaml
new file mode 100644
index 0000000000000..e3f692a761b32
--- /dev/null
+++ b/recipes/rabies/meta.yaml
@@ -0,0 +1,53 @@
+{% set name = "rabies" %}
+{% set version = "0.5.1" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/rabies-{{ version }}.tar.gz
+  sha256: 8ae93c1b8c5ba00c21a42a23f39cc36f365e5962596fdbe9760c0f504cea3a36
+
+build:
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage('rabies', max_pin="x.x") }}
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+
+requirements:
+  host:
+    - python >=3.9
+    - pip
+  run:
+    - python >=3.9
+    - matplotlib-base ==3.3.4
+    - nibabel ==3.2.1
+    - nilearn ==0.7.1
+    - nipype ==1.6.1
+    - numpy ==1.20.1
+    - pandas ==1.2.4
+    - pathos ==0.2.7
+    - pybids ==0.16.3
+    - scikit-learn ==0.24.1
+    - scipy ==1.8.1
+    - seaborn ==0.11.1
+    - simpleitk ==2.0.2
+    - qbatch ==2.3
+    - networkx <3
+    - etelemetry >=0.2.0
+
+test:
+  imports:
+    - rabies
+
+about:
+  home: https://github.com/CoBrALab/RABIES
+  summary: 'RABIES: Rodent Automated Bold Improvement of EPI Sequences.'
+  license: GPL-2.0
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - jaeakle
diff --git a/recipes/racon/build.sh b/recipes/racon/build.sh
index 468703346513e..5bca68065ae90 100644
--- a/recipes/racon/build.sh
+++ b/recipes/racon/build.sh
@@ -1,9 +1,20 @@
 #!/bin/bash
 
+case $(uname -m) in
+    x86_64)
+        SPOA_OPTS="-Dspoa_optimize_for_portability=ON"
+        ;;
+    aarch64)
+        SPOA_OPTS="-Dspoa_use_simde=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -DBUILD_TESTING=OFF"
+        ;;
+    *)
+        ;;
+esac
+
 mkdir -p $PREFIX/bin
 mkdir build
 cd build
-cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=${PREFIX} -Dracon_build_wrapper=ON -Dspoa_optimize_for_portability=ON ..
+cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=${PREFIX} -Dracon_build_wrapper=ON ${SPOA_OPTS} ..
 make
 chmod +w bin/racon_wrapper
 make install
diff --git a/recipes/racon/meta.yaml b/recipes/racon/meta.yaml
index 3a6b3fb266c94..f2f1e5d7e4e16 100644
--- a/recipes/racon/meta.yaml
+++ b/recipes/racon/meta.yaml
@@ -6,7 +6,9 @@ package:
   version: {{ version }}
 
 build:
-  number: 2
+  number: 3
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x") }}
 
 source:
   url: https://github.com/lbcb-sci/racon/archive/refs/tags/{{ version }}.tar.gz
@@ -37,3 +39,7 @@ about:
   license: MIT
   license_file: LICENSE
   summary: Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads.
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/radiant/build.sh b/recipes/radiant/build.sh
new file mode 100644
index 0000000000000..9223f1a6f8a8a
--- /dev/null
+++ b/recipes/radiant/build.sh
@@ -0,0 +1,6 @@
+
+export CXXFLAGS="${CXXFLAGS} -D_LIBCPP_DISABLE_AVAILABILITY"
+cmake -DCMAKE_INSTALL_PREFIX=$PREFIX -S . -B build
+cmake --build build
+cmake --install build
+
diff --git a/recipes/radiant/meta.yaml b/recipes/radiant/meta.yaml
new file mode 100644
index 0000000000000..d79fe4d62761d
--- /dev/null
+++ b/recipes/radiant/meta.yaml
@@ -0,0 +1,44 @@
+{% set name = "radiant" %}
+{% set version = "1.1.5" %}
+{% set sha256 = "e3c37d15cdaf227f88ebd23e7ed55eee6d12c549a3521212f5e0d2655aa4dcad" %}
+
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://zivgitlab.uni-muenster.de/domain-world/RADIANT/-/archive/{{ version }}/RADIANT-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('radiant', max_pin="x") }}
+
+requirements:
+  build:
+    - cmake >=3.15
+    - make
+    - {{ compiler('cxx') }}
+  host:
+    - sqlite
+    - bzip2
+    - zlib
+    - openmp
+    - boost-cpp >=1.77
+  run:
+    - sqlite
+    - openmp
+    - boost-cpp >=1.77
+test:
+  commands:
+    - radiant -h
+
+about:
+  home: https://domainworld.uni-muenster.de/data/radiant-db/index.html
+  license: GPL-3.0-or-later
+  license_file: LICENSE
+  summary: Annotate proteomes with protein domains
+  description: |
+    This program rapidly annotates protein sequences with Pfam domains
diff --git a/recipes/raiss/meta.yaml b/recipes/raiss/meta.yaml
index 8408f388cf017..6ba190e766b4d 100644
--- a/recipes/raiss/meta.yaml
+++ b/recipes/raiss/meta.yaml
@@ -1,5 +1,6 @@
 {% set name = "raiss" %}
-{% set version = "3.1" %}
+
+{% set version = "4.0.1" %}
 
 package:
   name: {{ name }}
@@ -7,7 +8,8 @@ package:
 
 source:
   url: https://gitlab.pasteur.fr/statistical-genetics/{{ name }}/-/archive/{{ version  }}/{{ name }}-{{ version }}.tar.gz
-  sha256: fe552f31deab68de2fc0a9086e38f4bfe0339e544733e2a68e84abe2013f06da
+  sha256: eb5cc6b67b395fbf5c2678a253dd7fd2c30c5f62a7358253778b1c6c1161a89f
+
 
 build:
   noarch: python
@@ -15,16 +17,23 @@ build:
     - raiss=raiss.__main__:main
   number: 0
   script: {{ PYTHON }} -m pip install --no-deps --ignore-installed -vv .
+  run_exports:
+    - {{ pin_subpackage('raiss', max_pin="x.x") }}
 
 requirements:
   host:
-    - python >=3.6
+    - python >=3.8
     - pip
   run:
-    - python >=3.6
-    - scipy
-    - pandas
+    - python >=3.8
     - joblib
+    - numpy
+    - pandas
+    - python-dateutil
+    - pytz
+    - scipy >=1.7.0
+    - six
+    - tzdata
 
 test:
   commands:
diff --git a/recipes/rapgreen/LICENSE b/recipes/rapgreen/LICENSE
new file mode 100644
index 0000000000000..f288702d2fa16
--- /dev/null
+++ b/recipes/rapgreen/LICENSE
@@ -0,0 +1,674 @@
+                    GNU GENERAL PUBLIC LICENSE
+                       Version 3, 29 June 2007
+
+ Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/>
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+                            Preamble
+
+  The GNU General Public License is a free, copyleft license for
+software and other kinds of works.
+
+  The licenses for most software and other practical works are designed
+to take away your freedom to share and change the works.  By contrast,
+the GNU General Public License is intended to guarantee your freedom to
+share and change all versions of a program--to make sure it remains free
+software for all its users.  We, the Free Software Foundation, use the
+GNU General Public License for most of our software; it applies also to
+any other work released this way by its authors.  You can apply it to
+your programs, too.
+
+  When we speak of free software, we are referring to freedom, not
+price.  Our General Public Licenses are designed to make sure that you
+have the freedom to distribute copies of free software (and charge for
+them if you wish), that you receive source code or can get it if you
+want it, that you can change the software or use pieces of it in new
+free programs, and that you know you can do these things.
+
+  To protect your rights, we need to prevent others from denying you
+these rights or asking you to surrender the rights.  Therefore, you have
+certain responsibilities if you distribute copies of the software, or if
+you modify it: responsibilities to respect the freedom of others.
+
+  For example, if you distribute copies of such a program, whether
+gratis or for a fee, you must pass on to the recipients the same
+freedoms that you received.  You must make sure that they, too, receive
+or can get the source code.  And you must show them these terms so they
+know their rights.
+
+  Developers that use the GNU GPL protect your rights with two steps:
+(1) assert copyright on the software, and (2) offer you this License
+giving you legal permission to copy, distribute and/or modify it.
+
+  For the developers' and authors' protection, the GPL clearly explains
+that there is no warranty for this free software.  For both users' and
+authors' sake, the GPL requires that modified versions be marked as
+changed, so that their problems will not be attributed erroneously to
+authors of previous versions.
+
+  Some devices are designed to deny users access to install or run
+modified versions of the software inside them, although the manufacturer
+can do so.  This is fundamentally incompatible with the aim of
+protecting users' freedom to change the software.  The systematic
+pattern of such abuse occurs in the area of products for individuals to
+use, which is precisely where it is most unacceptable.  Therefore, we
+have designed this version of the GPL to prohibit the practice for those
+products.  If such problems arise substantially in other domains, we
+stand ready to extend this provision to those domains in future versions
+of the GPL, as needed to protect the freedom of users.
+
+  Finally, every program is threatened constantly by software patents.
+States should not allow patents to restrict development and use of
+software on general-purpose computers, but in those that do, we wish to
+avoid the special danger that patents applied to a free program could
+make it effectively proprietary.  To prevent this, the GPL assures that
+patents cannot be used to render the program non-free.
+
+  The precise terms and conditions for copying, distribution and
+modification follow.
+
+                       TERMS AND CONDITIONS
+
+  0. Definitions.
+
+  "This License" refers to version 3 of the GNU General Public License.
+
+  "Copyright" also means copyright-like laws that apply to other kinds of
+works, such as semiconductor masks.
+
+  "The Program" refers to any copyrightable work licensed under this
+License.  Each licensee is addressed as "you".  "Licensees" and
+"recipients" may be individuals or organizations.
+
+  To "modify" a work means to copy from or adapt all or part of the work
+in a fashion requiring copyright permission, other than the making of an
+exact copy.  The resulting work is called a "modified version" of the
+earlier work or a work "based on" the earlier work.
+
+  A "covered work" means either the unmodified Program or a work based
+on the Program.
+
+  To "propagate" a work means to do anything with it that, without
+permission, would make you directly or secondarily liable for
+infringement under applicable copyright law, except executing it on a
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+
+  To "convey" a work means any kind of propagation that enables other
+parties to make or receive copies.  Mere interaction with a user through
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+
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+to the extent that it includes a convenient and prominently visible
+feature that (1) displays an appropriate copyright notice, and (2)
+tells the user that there is no warranty for the work (except to the
+extent that warranties are provided), that licensees may convey the
+work under this License, and how to view a copy of this License.  If
+the interface presents a list of user commands or options, such as a
+menu, a prominent item in the list meets this criterion.
+
+  1. Source Code.
+
+  The "source code" for a work means the preferred form of the work
+for making modifications to it.  "Object code" means any non-source
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+linked subprograms that the work is specifically designed to require,
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+subprograms and other parts of the work.
+
+  The Corresponding Source need not include anything that users
+can regenerate automatically from other parts of the Corresponding
+Source.
+
+  The Corresponding Source for a work in source code form is that
+same work.
+
+  2. Basic Permissions.
+
+  All rights granted under this License are granted for the term of
+copyright on the Program, and are irrevocable provided the stated
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+  You may make, run and propagate covered works that you do not
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+sale, or importing the Program or any portion of it.
+
+  11. Patents.
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+
+  A contributor's "essential patent claims" are all patent claims
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+patent license for this particular work, or (3) arrange, in a manner
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+  A patent license is "discriminatory" if it does not include within
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+
+  Nothing in this License shall be construed as excluding or limiting
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+otherwise be available to you under applicable patent law.
+
+  12. No Surrender of Others' Freedom.
+
+  If conditions are imposed on you (whether by court order, agreement or
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+not convey it at all.  For example, if you agree to terms that obligate you
+to collect a royalty for further conveying from those to whom you convey
+the Program, the only way you could satisfy both those terms and this
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+
+  13. Use with the GNU Affero General Public License.
+
+  Notwithstanding any other provision of this License, you have
+permission to link or combine any covered work with a work licensed
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+
+  14. Revised Versions of this License.
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+  The Free Software Foundation may publish revised and/or new versions of
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+be similar in spirit to the present version, but may differ in detail to
+address new problems or concerns.
+
+  Each version is given a distinguishing version number.  If the
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+option of following the terms and conditions either of that numbered
+version or of any later version published by the Free Software
+Foundation.  If the Program does not specify a version number of the
+GNU General Public License, you may choose any version ever published
+by the Free Software Foundation.
+
+  If the Program specifies that a proxy can decide which future
+versions of the GNU General Public License can be used, that proxy's
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+
+  Later license versions may give you additional or different
+permissions.  However, no additional obligations are imposed on any
+author or copyright holder as a result of your choosing to follow a
+later version.
+
+  15. Disclaimer of Warranty.
+
+  THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
+APPLICABLE LAW.  EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
+HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY
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+  16. Limitation of Liability.
+
+  IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
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+SUCH DAMAGES.
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+  17. Interpretation of Sections 15 and 16.
+
+  If the disclaimer of warranty and limitation of liability provided
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+reviewing courts shall apply local law that most closely approximates
+an absolute waiver of all civil liability in connection with the
+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
+                     END OF TERMS AND CONDITIONS
+
+            How to Apply These Terms to Your New Programs
+
+  If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
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+
+    <one line to give the program's name and a brief idea of what it does.>
+    Copyright (C) <year>  <name of author>
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+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
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+    (at your option) any later version.
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+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+Also add information on how to contact you by electronic and paper mail.
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+  If the program does terminal interaction, make it output a short
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+
+    <program>  Copyright (C) <year>  <name of author>
+    This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+    This is free software, and you are welcome to redistribute it
+    under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License.  Of course, your program's commands
+might be different; for a GUI interface, you would use an "about box".
+
+  You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+<https://www.gnu.org/licenses/>.
+
+  The GNU General Public License does not permit incorporating your program
+into proprietary programs.  If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library.  If this is what you want to do, use the GNU Lesser General
+Public License instead of this License.  But first, please read
+<https://www.gnu.org/licenses/why-not-lgpl.html>.
diff --git a/recipes/rapgreen/build.sh b/recipes/rapgreen/build.sh
new file mode 100644
index 0000000000000..a37108bb7683c
--- /dev/null
+++ b/recipes/rapgreen/build.sh
@@ -0,0 +1,21 @@
+#!/bin/bash
+set -eux -o pipefail
+
+# Prepare share folder 
+RAPGREEN_DIR=${PREFIX}/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
+mkdir -p ${RAPGREEN_DIR}
+
+# take care of the jar and copy it into the share folder
+mkdir -p "$PREFIX/bin"
+cp -rf ${SRC_DIR}/bin/* ${RAPGREEN_DIR}
+
+# Handle python wrapper script that will call the jar file
+cp ${RECIPE_DIR}/rapgreen.py ${RAPGREEN_DIR}/
+printf '#!/bin/bash\n' > ${RAPGREEN_DIR}/rapgreen
+printf "cd ${RAPGREEN_DIR} \n" >> ${RAPGREEN_DIR}/rapgreen
+printf 'python rapgreen.py "$@"\n' >> ${RAPGREEN_DIR}/rapgreen
+ln -s ${RAPGREEN_DIR}/rapgreen ${PREFIX}/bin/
+
+# Make executable in the share folder
+chmod +x ${RAPGREEN_DIR}/*
+
diff --git a/recipes/rapgreen/meta.yaml b/recipes/rapgreen/meta.yaml
new file mode 100644
index 0000000000000..305ec6feadb67
--- /dev/null
+++ b/recipes/rapgreen/meta.yaml
@@ -0,0 +1,41 @@
+{% set name = "rapgreen" %}
+{% set version = "1.0" %}
+{% set sha256 = "6fffe70e950123715b22b49564f49f05d3c0b6193c765b96776eaee8394aabae" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://github.com/SouthGreenPlatform/rap-green/archive/refs/tags/v{{version}}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  run_exports:
+    - {{ pin_subpackage('rapgreen', max_pin="x") }}
+  number: 0
+  noarch: generic
+
+requirements:
+  run:
+    - openjdk
+    - python >=3.8
+
+test:
+  commands:
+    - rapgreen --help
+    - rapgreen --help -Xms512m -Xmx1g
+
+about:
+  home: https://github.com/SouthGreenPlatform/rap-green
+  license: GPLv3
+  license_family: GPL
+  license_file: LICENSE
+  summary: "Manipulate and annotate phylogenetic trees"
+  doc_url: http://southgreenplatform.github.io/rap-green/
+
+extra:
+  maintainers: 
+    - dereeper
+  identifiers:
+    - biotools:rap-green
diff --git a/recipes/rapgreen/rapgreen.py b/recipes/rapgreen/rapgreen.py
new file mode 100644
index 0000000000000..34ca99d94b201
--- /dev/null
+++ b/recipes/rapgreen/rapgreen.py
@@ -0,0 +1,101 @@
+#!/usr/bin/env python
+#
+# Wrapper script for Java Conda packages that ensures that the java runtime
+# is invoked with the right options. Adapted from the bash script (http://stackoverflow.com/questions/59895/can-a-bash-script-tell-what-directory-its-stored-in/246128#246128).
+
+#
+# Program Parameters
+#
+import os
+import subprocess
+import sys
+import shutil
+from os import access
+from os import getenv
+from os import X_OK
+jar_file = 'RapGreen.jar'
+
+default_jvm_mem_opts = ['-Xms512m', '-Xmx1g']
+
+# !!! End of parameter section. No user-serviceable code below this line !!!
+
+
+def real_dirname(path):
+    """Return the symlink-resolved, canonicalized directory-portion of path."""
+    return os.path.dirname(os.path.realpath(path))
+
+
+def java_executable():
+    """Return the executable name of the Java interpreter."""
+    java_home = getenv('JAVA_HOME')
+    java_bin = os.path.join('bin', 'java')
+
+    if java_home and access(os.path.join(java_home, java_bin), X_OK):
+        return os.path.join(java_home, java_bin)
+    else:
+        return 'java'
+
+
+def jvm_opts(argv):
+    """Construct list of Java arguments based on our argument list.
+    The argument list passed in argv must not include the script name.
+    The return value is a 3-tuple lists of strings of the form:
+      (memory_options, prop_options, passthrough_options)
+    """
+    mem_opts = []
+    prop_opts = []
+    pass_args = []
+    exec_dir = None
+
+    for arg in argv:
+        if arg.startswith('-D'):
+            prop_opts.append(arg)
+        elif arg.startswith('-XX'):
+            prop_opts.append(arg)
+        elif arg.startswith('-Xm'):
+            mem_opts.append(arg)
+        elif arg.startswith('--exec_dir='):
+            exec_dir = arg.split('=')[1].strip('"').strip("'")
+            if not os.path.exists(exec_dir):
+                shutil.copytree(real_dirname(sys.argv[0]), exec_dir, symlinks=False, ignore=None)
+        else:
+            pass_args.append(arg)
+
+    # In the original shell script the test coded below read:
+    #   if [ "$jvm_mem_opts" == "" ] && [ -z ${_JAVA_OPTIONS+x} ]
+    # To reproduce the behaviour of the above shell code fragment
+    # it is important to explictly check for equality with None
+    # in the second condition, so a null envar value counts as True!
+
+    if mem_opts == [] and getenv('_JAVA_OPTIONS') is None:
+        mem_opts = default_jvm_mem_opts
+
+    return (mem_opts, prop_opts, pass_args, exec_dir)
+
+
+def main():
+    java = java_executable()
+    """
+    PeptideShaker updates files relative to the path of the jar file.
+    In a multiuser setting, the option --exec_dir="exec_dir"
+    can be used as the location for the peptide-shaker distribution.
+    If the exec_dir dies not exist,
+    we copy the jar file, lib, and resources to the exec_dir directory.
+    """
+    (mem_opts, prop_opts, pass_args, exec_dir) = jvm_opts(sys.argv[1:])
+    jar_dir = exec_dir if exec_dir else real_dirname(sys.argv[0])
+
+    if pass_args != [] and pass_args[0].startswith('eu'):
+        jar_arg = '-cp'
+    else:
+        jar_arg = '-jar'
+
+    jar_path = os.path.join(jar_dir, jar_file)
+
+    java_args = [java] + mem_opts + prop_opts + [jar_arg] + [jar_path] + pass_args
+
+    sys.exit(subprocess.call(java_args))
+
+
+if __name__ == '__main__':
+    main()
diff --git a/recipes/rappas/meta.yaml b/recipes/rappas/meta.yaml
index 36073809e86af..d0b213969ed33 100644
--- a/recipes/rappas/meta.yaml
+++ b/recipes/rappas/meta.yaml
@@ -1,18 +1,20 @@
 package:
   name: rappas
-  version: '1.21'
+  version: '1.22'
 
 source:
-  url: https://github.com/blinard-BIOINFO/RAPPAS/archive/v1.21.tar.gz
-  sha256: d9eb91fc0412b6517278a19f0f35a69de5da193aac25376180af74819165274d
+  url: https://github.com/blinard-BIOINFO/RAPPAS/archive/v1.22.tar.gz
+  sha256: 52c5023f1fae57fad2cf0d0f8ecb1ae9f8dda99fa79de405ccc58288ba4cc09d
 
 build:
-  number: 1
+  number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('rappas', max_pin="x.x") }}
 
 requirements:
   host:
-    - ant 1.10.0
+    - ant >=1.10.0
     - openjdk >=8.0.144
   run:
     - openjdk >=8.0.144
diff --git a/recipes/raptor/build.sh b/recipes/raptor/build.sh
index d718df2eaca8e..ea27c80c990bb 100644
--- a/recipes/raptor/build.sh
+++ b/recipes/raptor/build.sh
@@ -1,10 +1,44 @@
 #!/bin/bash
 
-mkdir -p build
-cd build
-cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_CXX_FLAGS="-mavx2 -D__STDC_FORMAT_MACROS" -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_LTO_BUILD=OFF
-make -j"${CPU_COUNT}"
-
-mkdir -p $PREFIX/bin
-cp bin/raptor $PREFIX/bin
-chmod +x $PREFIX/bin/raptor
+set -eux
+
+get_instruction_set_flags() {
+    local instruction_set="$1"
+    case "${instruction_set}" in
+        none)
+            echo ""
+            ;;
+        sse2)
+            echo "-msse2"
+            ;;
+        sse4.2)
+            echo "-msse4.2"
+            ;;
+        avx2)
+            echo "-mavx2"
+            ;;
+        avx512)
+            echo "-mavx512f -mavx512bw"
+            ;;
+        *)
+            echo "Unknown instruction set: ${instruction_set}" >&2
+            exit 1
+            ;;
+    esac
+}
+
+for INSTRUCTION_SET in "none" "sse2" "sse4.2" "avx2" "avx512"; do
+    mkdir -p build/${INSTRUCTION_SET}
+    cd build/${INSTRUCTION_SET}
+    cmake ../.. -DCMAKE_BUILD_TYPE=Release \
+                -DCMAKE_CXX_FLAGS="$(get_instruction_set_flags ${INSTRUCTION_SET}) -Wno-interference-size -D__STDC_FORMAT_MACROS" \
+                -DRAPTOR_NATIVE_BUILD=OFF \
+                -DCMAKE_INSTALL_PREFIX="${PREFIX}"
+    make -j"${CPU_COUNT}"
+    make install
+    mv "${PREFIX}/bin/raptor" "${PREFIX}/bin/raptor_${INSTRUCTION_SET}"
+    cd ../..
+done
+
+cp "${RECIPE_DIR}/raptor" "${PREFIX}/bin/raptor"
+chmod +x "${PREFIX}/bin/raptor"
diff --git a/recipes/raptor/meta.yaml b/recipes/raptor/meta.yaml
index e0462b62e1c01..cf815b6a65db9 100644
--- a/recipes/raptor/meta.yaml
+++ b/recipes/raptor/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "raptor" %}
-{% set version = "3.0.0" %}
+{% set version = "3.0.1" %}
 
 package:
   name: "{{ name }}"
@@ -7,11 +7,13 @@ package:
 
 source:
   url: https://github.com/seqan/{{ name }}/releases/download/{{ name }}-v{{ version }}/{{ name }}-{{ version }}-Source.tar.xz
-  sha256: cb984586d249d9dcf85bc672568735c797002e319f4ce922e918837800746f06
+  sha256: be44e7b2635e110c940cf40ff132956200551a2e25765d9f057e844f7a3ccebb
 
 build:
-  number: 1
+  number: 2
   skip: True # [osx]
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   build:
@@ -21,9 +23,11 @@ requirements:
   host:
     - bzip2
     - zlib
+    - yaml-cpp
   run:
     - bzip2
     - zlib
+    - yaml-cpp
 
 test:
   commands:
diff --git a/recipes/raptor/raptor b/recipes/raptor/raptor
new file mode 100644
index 0000000000000..107b82cc749f2
--- /dev/null
+++ b/recipes/raptor/raptor
@@ -0,0 +1,31 @@
+#!/bin/bash
+
+set -eu
+
+# -c : return count
+# -m 1 : stop after first match, i.e. count is either 0 or 1
+# -E : use extended regular expressions
+# \b : matches any non alphanumeric character, i.e. space, tab, newline, etc.
+# || true: ignore `grep -c` returning a non-zero exit code (behavior depends on OS)
+HAS_SSE2=$(grep -c -m 1 -E '\bsse2\b' /proc/cpuinfo || true)
+HAS_SSE4_2=$(grep -c -m 1 -E '\bsse4_2\b' /proc/cpuinfo || true)
+HAS_AVX2=$(grep -c -m 1 -E '\bavx2\b' /proc/cpuinfo || true)
+HAS_AVX512F=$(grep -c -m 1 -E '\bavx512f\b' /proc/cpuinfo || true)
+HAS_AVX512BW=$(grep -c -m 1 -E '\bavx512bw\b' /proc/cpuinfo || true)
+if [ ${HAS_AVX512F} -eq 1 ] && [ ${HAS_AVX512BW} -eq 1 ]; then
+    HAS_AVX512=1
+else
+    HAS_AVX512=0
+fi
+
+if [ ${HAS_AVX512} -eq 1 ]; then
+    raptor_avx512 "$@"
+elif [ ${HAS_AVX2} -eq 1 ]; then
+    raptor_avx2 "$@"
+elif [ ${HAS_SSE4_2} -eq 1 ]; then
+    raptor_sse4.2 "$@"
+elif [ ${HAS_SSE2} -eq 1 ]; then
+    raptor_sse2 "$@"
+else
+    raptor_none "$@"
+fi
diff --git a/recipes/rasusa/meta.yaml b/recipes/rasusa/meta.yaml
index 0bd1e57489918..62ab2ce9115a0 100644
--- a/recipes/rasusa/meta.yaml
+++ b/recipes/rasusa/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.7.1" %}
+{% set version = "2.0.0" %}
 {% set name = "rasusa" %}
 
 package:
@@ -7,24 +7,29 @@ package:
 
 source:
   url: https://github.com/mbhall88/{{ name }}/archive/{{ version }}.tar.gz
-  sha256: 7a7e3f2f2038b3fd3ce112fa7264ef8cbd91c2aa14fe60d8be1be1bb13416a56
+  sha256: 7921a94cb5c30c194c3d966e7dd80d034a9cf840d853b3fe1725d90d5800e2bd
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('rasusa', max_pin="x.x") }}
 
 requirements:
   build:
-    - rust >=1.53
+    - rust >=1.74.1
     - {{ compiler('c') }}              # [not win]
 
 test:
   commands:
     - rasusa --help
+    - rasusa reads --help
+    - rasusa aln --help
+    - rasusa cite
 
 about:
   home: https://github.com/mbhall88/rasusa
   license: MIT
-  summary: Randomly subsample sequencing reads to a specified coverage
+  summary: Randomly subsample sequencing reads or alignments
   license_file: LICENSE
 
 extra:
diff --git a/recipes/raven-assembler/build.sh b/recipes/raven-assembler/build.sh
index 58d793204e0f0..a137c14a65d82 100644
--- a/recipes/raven-assembler/build.sh
+++ b/recipes/raven-assembler/build.sh
@@ -1,9 +1,20 @@
 #!/bin/bash
 
+case $(uname -m) in
+    x86_64)
+        SPOA_OPTS="-Dspoa_optimize_for_portability=ON"
+        ;;
+    aarch64)
+        SPOA_OPTS="-Dspoa_use_simde=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON"
+        ;;
+    *)
+        ;;
+esac
+
 mkdir -p $PREFIX/bin
 rm -rf build
 mkdir build
 cd build
-cmake -DCMAKE_BUILD_TYPE=Release -DRAVEN_BUILD_EXE=ON -DCMAKE_INSTALL_PREFIX=$PREFIX -Dspoa_optimize_for_portability=ON ..
-make
+cmake -DCMAKE_BUILD_TYPE=Release -DRAVEN_BUILD_EXE=ON -DCMAKE_INSTALL_PREFIX=$PREFIX ${SPOA_OPTS} ..
+make -j ${CPU_COUNT}
 cp bin/raven $PREFIX/bin
diff --git a/recipes/raven-assembler/meta.yaml b/recipes/raven-assembler/meta.yaml
index 1d387c0713072..3e128de7c38a4 100644
--- a/recipes/raven-assembler/meta.yaml
+++ b/recipes/raven-assembler/meta.yaml
@@ -1,16 +1,18 @@
 {% set name = 'raven-assembler' %}
-{% set version = '1.8.1' %}
+{% set version = '1.8.3' %}
 
 package:
   name: {{ name }}
   version: {{ version }}
 
 build:
-  number: 3
+  number: 1
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 source:
   url: https://github.com/lbcb-sci/raven/archive/{{ version }}.tar.gz
-  sha256: 00009e9027761fa28313db4e2b5c5f40ebc10e6631b43b755e321ac6bbcc2c06
+  sha256: 5e7725d1115f7bbd2b6e72d3eb813e99beee552abdb751050d092de2348e5439
 
 requirements:
   build:
@@ -25,7 +27,7 @@ requirements:
 
 test:
   commands:
-    - raven -h
+    - raven --help
 
 about:
   home: https://github.com/lbcb-sci/raven
@@ -34,5 +36,7 @@ about:
   summary: "Raven is an assembler for raw reads generated by the third generation sequencing."
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   recipe-maintainers:
     - thanhleviet
diff --git a/recipes/raxml-ng/build.sh b/recipes/raxml-ng/build.sh
index 6209021d02b11..1ad4779811365 100644
--- a/recipes/raxml-ng/build.sh
+++ b/recipes/raxml-ng/build.sh
@@ -4,7 +4,7 @@
 mkdir build_pthreads
 pushd build_pthreads
    cmake ..
-   make
+   make -j ${CPU_COUNT}
    install -d ${PREFIX}/bin
    install ../bin/raxml-ng ${PREFIX}/bin
 popd
@@ -15,7 +15,7 @@ then
   mkdir build_mpi
   pushd build_mpi
      CXX=mpicxx cmake -DUSE_MPI=ON ..
-     make
+     make -j ${CPU_COUNT}
      install -d ${PREFIX}/bin
      install ../bin/raxml-ng-mpi ${PREFIX}/bin
   popd
diff --git a/recipes/raxml-ng/meta.yaml b/recipes/raxml-ng/meta.yaml
index 8a71b9c015b1d..f86629d2e50cf 100644
--- a/recipes/raxml-ng/meta.yaml
+++ b/recipes/raxml-ng/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "raxml-ng" %}
-{% set version = "1.2.0" %}
+{% set version = "1.2.2" %}
 
 package:
   name: {{ name|lower }}
@@ -7,10 +7,12 @@ package:
 
 source:
   url: https://github.com/amkozlov/raxml-ng/releases/download/{{ version }}/{{ name }}_v{{ version }}_source.zip
-  sha256: 1dc1940e2fbd0d701142c8bfa0c0007c5b39642493a60adb6a4cfa2d10e27ac8
+  sha256: ad22a51c74f4dbfdbf99c06f652d6dad824f7d072c82782db07587140a7bef82
 
 build:
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('raxml-ng', max_pin="x") }}
 
 requirements:
   build:
@@ -38,8 +40,10 @@ about:
    summary: "RAxML Next Generation: faster, easier-to-use and more flexible"
 
 extra:
-   container:
-     # openmpi needs ssh client
-     extended-base: true
-   identifiers:
-     - doi:10.1093/bioinformatics/btz305
+  additional-platforms:
+    - linux-aarch64
+  container:
+    # openmpi needs ssh client
+    extended-base: true
+  identifiers:
+    - doi:10.1093/bioinformatics/btz305
diff --git a/recipes/raxml/build.sh b/recipes/raxml/build.sh
index 7a51b016595ca..6dd8706245751 100644
--- a/recipes/raxml/build.sh
+++ b/recipes/raxml/build.sh
@@ -6,10 +6,17 @@ Linux) SUF=.gcc;;
 *) echo "Unknown architecture"; exit 1;;
 esac
 
+ARCH=$(uname -m)
+
 mkdir -p $PREFIX/bin
 
 for PTHREADS in "" .PTHREADS; do
   for OPT in "" .SSE3 .AVX2; do
+
+    if [ "${ARCH}" == "aarch64" -a "${OPT}" == ".AVX2" ]; then
+      continue
+    fi
+
     echo "######## Building Flags opt=$OPT pthread=$PTHREADS os=$SUF ######"
     MAKEFILE=Makefile${OPT}${PTHREADS}
     if [ -e ${MAKEFILE}${SUF} ]; then
diff --git a/recipes/raxml/meta.yaml b/recipes/raxml/meta.yaml
index 4383489feac98..b98b2551cc414 100644
--- a/recipes/raxml/meta.yaml
+++ b/recipes/raxml/meta.yaml
@@ -1,29 +1,29 @@
 package:
   name: raxml
-  version: "8.2.12"
+  version: "8.2.13"
 
 build:
-  number: 6
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('raxml', max_pin="x") }}
 
 source:
-  url: https://github.com/stamatak/standard-RAxML/archive/v8.2.12.tar.gz
-  sha256: 338f81b52b54e16090e193daf36c1d4baa9b902705cfdc7f4497e3e09718533b
+  url: https://github.com/stamatak/standard-RAxML/archive/refs/tags/v8.2.13.tar.gz
+  sha256: 28e500793324bd7d330b396ef27ea49c9186fa5e1edb3d5439036dc6c33e6067
 
 requirements:
   build:
     - make
     - {{ compiler('c') }}
 
-  run:
-
 test:
   commands:
     - raxmlHPC -h > /dev/null
     - raxmlHPC-PTHREADS -h > /dev/null
     - raxmlHPC-SSE3 -h > /dev/null
     - raxmlHPC-PTHREADS-SSE3 -h > /dev/null
-    - raxmlHPC-AVX2 -h > /dev/null
-    - raxmlHPC-PTHREADS-AVX2 -h > /dev/null
+    - 'raxmlHPC-AVX2 -h > /dev/null'  # [not aarch64]
+    - 'raxmlHPC-PTHREADS-AVX2 -h > /dev/null'  # [not aarch64]
 
 about:
   home: http://sco.h-its.org/exelixis/web/software/raxml/index.html
@@ -31,6 +31,8 @@ about:
   summary: Phylogenetics - Randomized Axelerated Maximum Likelihood.
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:raxml
     - doi:10.1093/bioinformatics/btu033
diff --git a/recipes/rbpbench/meta.yaml b/recipes/rbpbench/meta.yaml
new file mode 100644
index 0000000000000..f1762fc9744cc
--- /dev/null
+++ b/recipes/rbpbench/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "RBPBench" %}
+{% set version = "0.8.1" %}
+{% set sha256 = "fad4d23adc743716732641cc34f256e59dbd93d084d352aadeaa4f96e8e5dbb2" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/michauhl/{{ name }}/archive/v{{ version }}.tar.gz
+  sha256: "{{ sha256 }}"
+
+build:
+  number: 0
+  noarch: python
+  script: $PYTHON -m pip install . --ignore-installed --no-deps -vv
+  run_exports:
+    - {{ pin_subpackage('rbpbench', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python <3.12
+    - pip
+  run:
+    - python <3.12
+    - logomaker
+    - markdown
+    - meme >=5.0
+    - scipy
+    - plotly
+    - textdistance
+    - venn
+    - matplotlib-venn
+    - infernal
+    - bedtools
+    - upsetplot
+    - packaging
+
+test:
+  commands:
+    - rbpbench -h
+
+about:
+  home: https://github.com/michauhl/RBPBench
+  license: MIT
+  license_file: LICENSE
+  summary: Evaluate CLIP-seq and other genomic region data using a comprehensive collection of known RBP binding motifs
diff --git a/recipes/rcorrector/build.sh b/recipes/rcorrector/build.sh
index aca8c80b5e330..d856a68c52db5 100644
--- a/recipes/rcorrector/build.sh
+++ b/recipes/rcorrector/build.sh
@@ -2,7 +2,7 @@
 
 export C_INCLUDE_PATH=$PREFIX/include
 export OBJC_INCLUDE_PATH=$PREFIX/include
-export CPLUS_INCLUDE_PATH=$PREFIX/include 
+export CPLUS_INCLUDE_PATH=$PREFIX/include
 export LD_LIBRARY_PATH=$PATH/lib:$LD_LIBRARY_PATH
 export CFLAGS="-I$PREFIX/include"
 export CXXFLAGS="-Wall -O3 -std=c++0x -L$PREFIX/lib"
diff --git a/recipes/rcorrector/meta.yaml b/recipes/rcorrector/meta.yaml
index 9d532152a0e8e..5d667d2952db5 100644
--- a/recipes/rcorrector/meta.yaml
+++ b/recipes/rcorrector/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "rcorrector" %}
-{% set version = "1.0.6" %}
+{% set version = "1.0.7" %}
 
 package:
   name: {{ name }}
@@ -7,10 +7,12 @@ package:
 
 source:
   url: https://github.com/mourisl/Rcorrector/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 581a7028c68cca20ee045084adabde9f3f896485427c1b7f1c6253fb198cf38a
+  sha256: cc1a9e82056bdc717b7ac40729c90573caad371899f9a1c61c25b50f019fbedb
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage('rcorrector', max_pin="x") }}
 
 requirements:
   build:
@@ -33,6 +35,11 @@ test:
 about:
   home: https://github.com/mourisl/Rcorrector/
   license: GPL-3.0-only
-  license_family: GPL
+  license_family: GPL3
   license_file: LICENSE
   summary: Rcorrector (RNA-seq error CORRECTOR) is a kmer-based error correction method for RNA-seq data. Rcorrector can also be applied to other type of sequencing data where the read coverage is non-uniform, such as single-cell sequencing.
+
+extra:
+  identifiers:
+    - doi:10.1186/s13742-015-0089-y
+    - biotools:rcorrector
diff --git a/recipes/rdp_classifier/meta.yaml b/recipes/rdp_classifier/meta.yaml
index 2f1fc33e086f3..5341085f3b312 100644
--- a/recipes/rdp_classifier/meta.yaml
+++ b/recipes/rdp_classifier/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "2.13" %}
+{% set version = "2.14" %}
 
 package:
   name: rdp_classifier
@@ -6,11 +6,13 @@ package:
 
 source:
   url: https://sourceforge.net/projects/rdp-classifier/files/rdp-classifier/rdp_classifier_{{ version }}.zip
-  sha256: d2eb9a989d7e31ff824de6876bc1d8ab70d97112ece167afe8d87a3cd412086a
+  sha256: 2aac7ba2bf602eb025e1791f356c0c437200486ece6905f93219d51395504b2b
 
 build:
   noarch: generic
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('rdp_classifier', max_pin='x.x') }}
 
 requirements:
   run:
@@ -21,6 +23,6 @@ test:
     - rdp_classifier
 
 about:
-  home: 'http://rdp.cme.msu.edu/classifier/'
+  home: 'https://sourceforge.net/projects/rdp-classifier/'
   license: GPL-2.0-only
   summary: "Naive Bayesian classifier that can rapidly and accurately provide taxonomic assignments from domain to genus"
diff --git a/recipes/rdp_classifier/rdp_classifier.sh b/recipes/rdp_classifier/rdp_classifier.sh
index 1bbc9b3f9e0bb..1596d5df830e7 100644
--- a/recipes/rdp_classifier/rdp_classifier.sh
+++ b/recipes/rdp_classifier/rdp_classifier.sh
@@ -36,10 +36,10 @@ for arg in "$@"; do
         '-XX'*)
             jvm_prop_opts="$jvm_prop_opts $arg"
             ;;
-         '-Xm'*)
+        '-Xm'*)
             jvm_mem_opts="$jvm_mem_opts $arg"
             ;;
-         *)
+        *)
             pass_args="$pass_args $arg"
             ;;
     esac
diff --git a/recipes/rebar/LICENSE b/recipes/rebar/LICENSE
new file mode 100644
index 0000000000000..56b1b473c89f8
--- /dev/null
+++ b/recipes/rebar/LICENSE
@@ -0,0 +1,201 @@
+Apache License
+                           Version 2.0, January 2004
+                        http://www.apache.org/licenses/
+
+   TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
+
+   1. Definitions.
+
+      "License" shall mean the terms and conditions for use, reproduction,
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+   APPENDIX: How to apply the Apache License to your work.
+
+      To apply the Apache License to your work, attach the following
+      boilerplate notice, with the fields enclosed by brackets "[]"
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+   Copyright 2023 Public Health Agency of Canada
+
+   Licensed under the Apache License, Version 2.0 (the "License");
+   you may not use this file except in compliance with the License.
+   You may obtain a copy of the License at
+
+       http://www.apache.org/licenses/LICENSE-2.0
+
+   Unless required by applicable law or agreed to in writing, software
+   distributed under the License is distributed on an "AS IS" BASIS,
+   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+   See the License for the specific language governing permissions and
+   limitations under the License.
diff --git a/recipes/rebar/build.sh b/recipes/rebar/build.sh
new file mode 100644
index 0000000000000..2136c1ec32aa2
--- /dev/null
+++ b/recipes/rebar/build.sh
@@ -0,0 +1,6 @@
+#!/usr/bin/env bash
+
+ls "${SRC_DIR}"
+chmod +x "${SRC_DIR}"/rebar*
+mkdir -p "${PREFIX}/bin"
+mv "${SRC_DIR}"/rebar* "${PREFIX}"/bin/rebar
diff --git a/recipes/rebar/meta.yaml b/recipes/rebar/meta.yaml
new file mode 100644
index 0000000000000..1606b78768607
--- /dev/null
+++ b/recipes/rebar/meta.yaml
@@ -0,0 +1,40 @@
+{% set name = "rebar" %}
+{% set version = "0.2.1" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  - url: https://github.com/phac-nml/rebar/releases/download/v{{ version }}/{{ name }}-x86_64-unknown-linux-musl  # [linux64]
+    sha256: f89184240277130a539e71994690eb3ec6ec4b2c45a851097dc261891e5a9f11                                      # [linux64]
+  - url: https://github.com/phac-nml/rebar/releases/download/v{{ version }}/{{ name }}-x86_64-apple-darwin        # [osx and x86_64]
+    sha256: 86b3df61488f3d9576c62ea13e13bac480d9531a142a3fc8f2ed72689ceff833                                      # [osx and x86_64]
+
+build:
+  binary_relocation: False
+  number: 0
+  # If the software version starts with a 0 (e.g. 0.3.2) semantic versioning allows breaking changes in minor releases.
+  # https://bioconda.github.io/contributor/linting.html#missing-run-exports
+  run_exports:
+      - {{ pin_compatible(name, max_pin="x.x") }}      
+
+test:
+  commands:
+    - rebar --help
+
+about:
+  home: https://github.com/phac-nml/rebar
+  license: Apache-2.0
+  license_family: APACHE
+  license_file: LICENSE
+  summary: "Genomic recombination detection using mutational barcodes."
+
+extra:
+  maintainers:
+    - ktmeaton
+  recipe-maintainers:
+    - ktmeaton
+  skip-lints:
+    - should_be_noarch_generic
+
diff --git a/recipes/rebar/run_test.sh b/recipes/rebar/run_test.sh
new file mode 100644
index 0000000000000..8fab8c1320d57
--- /dev/null
+++ b/recipes/rebar/run_test.sh
@@ -0,0 +1,16 @@
+#!/usr/bin/env bash
+
+set -x
+set -e
+
+rebar --version
+
+# Dataset: Toy1
+rebar dataset download --name toy1 --tag custom --output-dir dataset/toy1
+rebar run --dataset-dir dataset/toy1 --populations "*" --mask 0,0 --min-length 3 --output-dir output/toy1
+rebar plot  --run-dir output/toy1 --annotations dataset/toy1/annotations.tsv
+
+# Dataset: SARS-CoV-2
+rebar dataset download --name sars-cov-2 --tag 2023-11-30 --output-dir dataset/sars-cov-2/2023-11-30
+rebar run --dataset-dir dataset/sars-cov-2/2023-11-30  --populations "AY.4.2*,BA.5.2,XBC.1.6*,XBB.1.5.1,XBL" --output-dir output/sars-cov-2
+rebar plot --run-dir output/sars-cov-2 --annotations dataset/sars-cov-2/2023-11-30/annotations.tsv
diff --git a/recipes/recentrifuge/meta.yaml b/recipes/recentrifuge/meta.yaml
index d5b01399af34f..792c16374b7da 100644
--- a/recipes/recentrifuge/meta.yaml
+++ b/recipes/recentrifuge/meta.yaml
@@ -1,5 +1,5 @@
-{% set name="recentrifuge" %}
-{% set version="1.12.1" %}
+{% set name = "recentrifuge" %}
+{% set version = "1.14.0" %}
 
 package:
   name: {{ name }}
@@ -8,18 +8,20 @@ package:
 build:
   noarch: python
   number: 0
-  script: python -m pip install --no-deps --ignore-installed .
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation . -vvv
+  run_exports:
+    - {{ pin_subpackage('recentrifuge', max_pin="x") }}
 
 source:
   url: https://github.com/khyox/{{ name }}/archive/v{{ version }}.tar.gz
-  sha256: 076dedf54f5d465580e6c2792335c4b0a42853c1eabb891c362479c21ba7e491
+  sha256: 8151fe3f7d6581f487eb10fab61ef211b132b0774128ed7d060b5fe389d69674
 
 requirements:
   host:
-    - python >=3
+    - python >=3.6
     - pip
   run:
-    - python >=3
+    - python >=3.6
     - biopython 1.79
     - numpy >=1.19.5
     - matplotlib-base >=3.3.4
@@ -32,9 +34,11 @@ test:
 
 about:
   home: https://github.com/khyox/recentrifuge
-  license: 'AGPLv3'
+  license: 'AGPL-3.0-or-later'
+  license_family: AGPL
   license_file: LICENSE.txt
   summary: 'Robust comparative analysis and contamination removal for metagenomics'
+  doc_url: https://github.com/khyox/recentrifuge/wiki
 
 extra:
   recipe-maintainers:
diff --git a/recipes/recgraph/build.sh b/recipes/recgraph/build.sh
new file mode 100644
index 0000000000000..049babcc91015
--- /dev/null
+++ b/recipes/recgraph/build.sh
@@ -0,0 +1,6 @@
+#!/bin/bash -euo
+
+RUST_BACKTRACE=1 CARGO_HOME="${BUILD_PREFIX}/.cargo" cargo build --release
+
+mkdir -p $PREFIX/bin
+cp target/release/recgraph $PREFIX/bin
diff --git a/recipes/recgraph/meta.yaml b/recipes/recgraph/meta.yaml
new file mode 100644
index 0000000000000..227ff06ebd53e
--- /dev/null
+++ b/recipes/recgraph/meta.yaml
@@ -0,0 +1,37 @@
+{% set name = "RecGraph" %}
+{% set version = "1.0.0" %}
+{% set sha256 = "a68a49ecc457f4070604244a21abde60c76b12dba03e8d4136c3fe20abae7ffc" %}
+
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/AlgoLab/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x") }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('c') }}
+    - rust =1.74
+
+test:
+  commands:
+    - recgraph --help
+
+about:
+  home: https://github.com/AlgoLab/{{ name }}
+  license: MIT
+  license_file: LICENSE
+  summary: Optimal sequence-to-graph alignment with recombinations
+
+extra:
+  recipe-maintainers:
+    - yp
diff --git a/recipes/recognizer/build.sh b/recipes/recognizer/build.sh
deleted file mode 100644
index 96dd646713b92..0000000000000
--- a/recipes/recognizer/build.sh
+++ /dev/null
@@ -1,7 +0,0 @@
-dir="${PREFIX}/share"
-mkdir -p "${dir}"
-mkdir -p "${PREFIX}/bin"
-cp recognizer.py "${dir}"
-cp -r resources/* "${dir}"
-chmod +x "${dir}/recognizer.py"
-ln -s "${dir}/recognizer.py" "${PREFIX}/bin/recognizer"
diff --git a/recipes/recognizer/meta.yaml b/recipes/recognizer/meta.yaml
index 659e6c766d666..efcc7fb27632f 100644
--- a/recipes/recognizer/meta.yaml
+++ b/recipes/recognizer/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "recognizer" %}
-{% set version = "1.9.1" %}
-{% set sha256 = "580706d2d51765da9c20c5eb4dc7d82d78c5a72c231c4c9c611a2559cc87e937" %}
+{% set version = "1.10.1" %}
+{% set sha256 = "1d97b521a5b8660e5dd1726c95b885bcdce53654d01a001d8e6522a9c76d81c2" %}
 
 package:
   name: {{ name|lower }}
@@ -13,6 +13,14 @@ source:
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+  script: >
+    mkdir -p $PREFIX/bin && 
+    mkdir -p $PREFIX/share && 
+    cp recognizer.py resources/*.tsv $PREFIX/share &&
+    chmod +x $PREFIX/share/recognizer.py &&
+    ln -s $PREFIX/share/recognizer.py $PREFIX/bin/recognizer
 
 requirements:
   run:
diff --git a/recipes/recon/build.sh b/recipes/recon/build.sh
index 5a165f6accd42..b3086e96e2f7a 100644
--- a/recipes/recon/build.sh
+++ b/recipes/recon/build.sh
@@ -4,7 +4,10 @@ set -x -e
 mkdir -p ${PREFIX}/bin
 
 cd src/
-make CC=$CC
+make CC=$CC -j ${CPU_COUNT}
 make install
 cd ..
 cp bin/* ${PREFIX}/bin
+
+# add read permissions to LICENSE
+chmod a+r LICENSE
\ No newline at end of file
diff --git a/recipes/recon/meta.yaml b/recipes/recon/meta.yaml
index 948d88827c76b..2c77d6a9ba408 100644
--- a/recipes/recon/meta.yaml
+++ b/recipes/recon/meta.yaml
@@ -9,7 +9,9 @@ source:
   sha256: 699765fa49d18dbfac9f7a82ecd054464b468cb7521abe9c2bd8caccf08ee7d8
 
 build:
-  number: 6
+  number: 7
+  run_exports:
+    - {{ pin_subpackage('recon', max_pin="x") }}
 
 requirements:
   build:
@@ -25,3 +27,7 @@ about:
   license: GPL2
   license_file: LICENSE
   summary: 'The RECON package performs de novo identification and classification of repeat sequence families from genomic sequences.'
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/redundans/build.sh b/recipes/redundans/build.sh
new file mode 100644
index 0000000000000..6c4142e6a3d24
--- /dev/null
+++ b/recipes/redundans/build.sh
@@ -0,0 +1,30 @@
+#!/bin/bash
+export CPATH=${PREFIX}/include
+#Define the install folder and binary folder and create them
+INSTALL_FOLDER=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
+BIN_FOLDER=$PREFIX/bin
+mkdir -p $INSTALL_FOLDER && mkdir -p $BIN_FOLDER
+
+#Copying files to proper installation folder
+chmod u+x redundans.py #To avoid permission issues
+
+#Avoid pathing issues with SSPACE pl script
+sed -i.bak 's|bin/SSPACE/SSPACE_Standard_v3.0.pl|SSPACE/SSPACE_Standard_v3.0.pl|g' redundans.py
+
+###### Copying files to proper installation directory and some to the binary directory ######
+cp redundans.py $INSTALL_FOLDER/ && cp redundans.py $BIN_FOLDER && cp README.md $INSTALL_FOLDER/
+cp -r test/ $INSTALL_FOLDER/ && cp -r test/ $BIN_FOLDER && cp -r docs/ $INSTALL_FOLDER/ && cp LICENSE $INSTALL_FOLDER/
+
+#We create a bin folder in the installation directory where we copy all binaries and scripts
+mkdir -p $INSTALL_FOLDER/bin &&  cp -r bin/SSPACE $INSTALL_FOLDER/bin && cp bin/*.py $INSTALL_FOLDER/bin && cp bin/k8-Linux $INSTALL_FOLDER/bin
+cp bin/platanus $INSTALL_FOLDER/bin && cp bin/GapCloser $INSTALL_FOLDER/bin && cp -r bin/last $INSTALL_FOLDER/bin && cp -r bin/merqury $INSTALL_FOLDER/bin
+
+#Cleaning up and copying from install folder to binary folder
+cp -r $INSTALL_FOLDER/bin/* $BIN_FOLDER/
+
+#Compile last and copy its binaries to BIN_FOLDER
+cd $BIN_FOLDER/last/ && make clean && make -j ${CPU_COUNT} && cd ..
+cp -t $BIN_FOLDER $BIN_FOLDER/last/bin/*
+
+#Give permissions to test folder in order to run tests if required
+chmod -R 777 $BIN_FOLDER/test/ && cd ..
diff --git a/recipes/redundans/meta.yaml b/recipes/redundans/meta.yaml
new file mode 100644
index 0000000000000..b7192980da0b6
--- /dev/null
+++ b/recipes/redundans/meta.yaml
@@ -0,0 +1,66 @@
+{% set name = "Redundans" %}
+{% set version = "2.01" %}
+{% set sha256hash = "85a1937015aa0af44a5402761356c4098b085ee7233fb1b7cf8254e2ca0f0e54" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/Gabaldonlab/redundans/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: {{ sha256hash }}
+
+build:
+  number: 0
+  skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage('redundans', max_pin="x") }}
+  no_link:
+   - bin/*.py
+
+requirements:
+  build:
+    - make
+    - {{ compiler('cxx') }}
+    - {{ compiler('c') }}
+
+  host:
+    - python >=3.8,<3.11
+    - pip
+    - zlib
+    - pillow
+    - perl
+
+  run:
+    - perl
+    - numpy >=1.24.0
+    - matplotlib-base >=3.7.3
+    - python >=3.8,<3.11
+    - minimap2 >=2.24
+    - miniasm >=0.3
+    - gfastats >=1.3.6
+    - meryl =1.3
+    - bwa >=0.7.12
+    - snap-aligner >=2.0.3
+    - r-base >=4
+    - r-argparse >=2.0.1
+    - r-ggplot2 >=3.3.2
+    - r-scales >=1.1.1
+    
+test:
+  commands:
+    - redundans.py --version
+
+
+about:
+  home: https://github.com/Gabaldonlab/redundans/
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE
+  summary: 'Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.'
+
+extra:
+  identifiers:
+    - biotools:redundans
+  recipe-maintainers:
+    - Dfupa
diff --git a/recipes/refgenieserver/meta.yaml b/recipes/refgenieserver/meta.yaml
index 97675eb0e90a3..020c26733bebb 100644
--- a/recipes/refgenieserver/meta.yaml
+++ b/recipes/refgenieserver/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "refgenieserver" %}
-{% set version = "0.6.0" %}
+{% set version = "0.7.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,19 +7,23 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: "bb355301efa0ea264d978efae5678e5afc9aa46e0a46cc160e8fd3330f549102"
+  sha256: "6d17ea0bb8e97dd8a09736958d098af580ac90de34f3cced388dd62e6ec2de5a"
 
 build:
   number: 0
   noarch: python
   entry_points:
     - refgenieserver = refgenieserver.main:main
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
 
 requirements:
   host:
     - pip
     - python >=3.6
+    # use_2to3 was removed in setuptools 58
+    - setuptools <58
   run:
     - python >=3.6
     - aiofiles
diff --git a/recipes/reframed/LICENSE.txt b/recipes/reframed/LICENSE.txt
new file mode 100644
index 0000000000000..ea167eefc7532
--- /dev/null
+++ b/recipes/reframed/LICENSE.txt
@@ -0,0 +1,15 @@
+Apache Software License 2.0
+
+Copyright (c) 2019, Daniel Machado
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
diff --git a/recipes/reframed/meta.yaml b/recipes/reframed/meta.yaml
index c8db5c7200bad..9121cbd0ac6ee 100644
--- a/recipes/reframed/meta.yaml
+++ b/recipes/reframed/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "reframed" %}
-{% set version = "1.4.0" %}
+{% set version = "1.5.1" %}
 
 package:
   name: {{ name|lower }}
@@ -7,12 +7,14 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/reframed-{{ version }}.tar.gz
-  sha256: 5da99d68dc7ca8ce39cbeabc46f6158b0e82885d3432afb5ec675f1d9a2017be
+  sha256: cded8ba31fa1dcddb358f79122cbe5d1f4562a538a4058045d462b50d7fc71c8
 
 build:
   noarch: python
-  script: {{ PYTHON }} -m pip install . -vv
-  number: 0
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('reframed', max_pin="x.x.x") }}
 
 requirements:
   host:
@@ -24,6 +26,8 @@ requirements:
     - scipy
     - sympy
     - python-libsbml
+    - pyscipopt
+    - scip
 
 test:
   imports:
@@ -41,6 +45,8 @@ about:
 
 extra:
   recipe-maintainers:
+    - lhtxa
+    - cdanielmachado
     - acaprez
   identifiers:
     - biotools:reframed
diff --git a/recipes/regenie/build.sh b/recipes/regenie/build.sh
index fc79b249cc054..1b8a8269d4876 100644
--- a/recipes/regenie/build.sh
+++ b/recipes/regenie/build.sh
@@ -25,7 +25,7 @@ cmake \
   -S "${SRC_DIR}" \
   -B build
 
-make  -C build -j${CPU_COUNT:=1} regenie
+make  -C build -j1 regenie
 make  -C build install
 
 # bash test/test_conda.sh --path "${SRC_DIR}"
diff --git a/recipes/regenie/meta.yaml b/recipes/regenie/meta.yaml
index b9c1fa671eeaa..0ee50bfab1262 100644
--- a/recipes/regenie/meta.yaml
+++ b/recipes/regenie/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "regenie" %}
-{% set version = "3.2.7" %}
-{% set sha256 = "bc3548bc04a011dfdbead80b5b1fae0be00d6fcc0e75c59326a50dfe2924c15a" %}
+{% set version = "3.4.1" %}
+{% set sha256 = "e2683cd4078015ece44cfbea28957695155dbad3b6a5ef6017654b1d8254f214" %}
 
 package:
   name: {{ name|lower }}
@@ -20,12 +20,16 @@ source:
     # - patches/0007-fix-cmakelist-file-for-osx.patch
     # - patches/0008-fix-cmakelist-file-for-osx-eigen4.patch
     # - patches/0009-update-cmake-file-for-conda.patch
-    - patches/0010-update-cmakelist-file-for-v3.2.7.patch
+    # - patches/0010-update-cmakelist-file-for-v3.2.7.patch
+    # - patches/0011-update-cmakelist-file-for-v3.2.9.patch
+    # - patches/0012-update-cmakelist-file-for-v3.4.patch
+    - patches/0013-update-cmakelist-file-for-v3.4.1.patch
 
 build:
-  number: 2
-
-
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('regenie', max_pin="x") }}
+    
 requirements:
   build:
     - {{ compiler('c') }}
@@ -38,14 +42,14 @@ requirements:
     - libgomp  # [linux]
   host:
     - bgenix >=1.1.7
-    - boost-cpp
+    - boost-cpp >=1.7
     - liblapack * *mkl
     - mkl >=2020.4
     - mkl-include
     - zlib
     - zstd
   run:
-    - boost-cpp
+    - boost-cpp >=1.7
     - mkl >=2020.4
     - sqlite
     - zlib
@@ -60,6 +64,7 @@ test:
 about:
   home: https://rgcgithub.github.io/regenie/
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary: 'Regenie is a C++ program for whole genome regression modelling of large genome-wide association studies (GWAS).'
   dev_url: https://github.com/rgcgithub/regenie
diff --git a/recipes/regenie/patches/0011-update-cmakelist-file-for-v3.2.9.patch b/recipes/regenie/patches/0011-update-cmakelist-file-for-v3.2.9.patch
new file mode 100644
index 0000000000000..fe8e0d4233d31
--- /dev/null
+++ b/recipes/regenie/patches/0011-update-cmakelist-file-for-v3.2.9.patch
@@ -0,0 +1,300 @@
+commit 975bd4a5a757eeaae1f7db62977d97de94a1fabd
+Author: Joelle Mbatchou <s.joelle.mbatchou@.regeneron.com>
+Date:   Mon Jul 31 17:48:11 2023 -0400
+
+    cmakelist file for v3.2.9
+
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index 4e0bfac..3609ab4 100755
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -1,11 +1,3 @@
+-# For Intel MKL, set MKLROOT=<MKL_path> when running cmake
+-#   e.g. MKLROOT=/opt/mkl/ cmake -S regenie_dir/ -B regenie_dir/build/
+-# For OpenBLAS, set OPENBLAS_ROOT=<OpenBLAS_path> when running cmake 
+-#   note: it also requires lapacke library
+-# For static compilation on Linux systems, set STATIC=1 when running cmake 
+-#   -> this excludes GLIBC
+-
+-
+ cmake_minimum_required(VERSION 3.13)
+ 
+ # detect OS architecture
+@@ -33,48 +25,16 @@ set(CMAKE_CXX_EXTENSIONS OFF)  # Ensures -std=c++11
+ ######################################
+ ######## check input variables
+ 
+-# check BGEN_PATH
+-if("$ENV{BGEN_PATH}" STREQUAL "")
+-  message( FATAL_ERROR "Must specify path to BGEN library in 'BGEN_PATH'")
+-else()
+-  set(BGEN_PATH "$ENV{BGEN_PATH}" CACHE INTERNAL "Set BGEN library path")
+-  if (NOT EXISTS ${BGEN_PATH})
+-    message( FATAL_ERROR "Specified BGEN library directory '${BGEN_PATH}' does not exist")
+-  endif()
+-endif()
+-
+ # check for static compilation
+-if($ENV{STATIC}) 
++if(BUILD_SHARED_LIBS)
++  set(BUILD_STATIC OFF CACHE INTERNAL "Dynamic compilation")
++  set(Boost_USE_STATIC_LIBS OFF)
++else()
+   set(BUILD_STATIC ON CACHE INTERNAL "Static compilation")
++  set(Boost_USE_STATIC_LIBS ON)
+   message( STATUS "Static compilation mode")
+ endif()
+ 
+-# check Boost IOStreams
+-if($ENV{HAS_BOOST_IOSTREAM}) 
+-  set(HAS_BOOST_IOSTREAM 1 CACHE INTERNAL "Add Boost IO")
+-  set(RG_VERSION "${RG_VERSION}.gz" CACHE INTERNAL "Update version")
+-else()
+-  set(HAS_BOOST_IOSTREAM 0 CACHE INTERNAL "Skip Boost IO")
+-endif()
+-
+-# check MKL
+-if(NOT "$ENV{MKLROOT}" STREQUAL "")
+-  set(MKLROOT "$ENV{MKLROOT}" CACHE INTERNAL "Set MKL library path")
+-  if (NOT EXISTS ${MKLROOT})
+-    message( FATAL_ERROR "Specified MKL library directory '${MKLROOT}' does not exist")
+-  endif()
+-  message( STATUS "Will compile with Intel MKL library")
+-endif()
+-
+-# check OpenBLAS
+-if(NOT "$ENV{OPENBLAS_ROOT}" STREQUAL "")
+-  set(OPENBLAS_ROOT "$ENV{OPENBLAS_ROOT}" CACHE INTERNAL "Set OpenBLAS library path")
+-  if (NOT EXISTS ${OPENBLAS_ROOT})
+-    message( FATAL_ERROR "Specified OpenBLAS library directory '${OPENBLAS_ROOT}' does not exist")
+-  endif()
+-  message( STATUS "Will compile with OpenBLAS library")
+-endif()
+-
+ ######################################
+ ######## set flags and required libraries
+ 
+@@ -83,6 +43,7 @@ set(Boost_USE_STATIC_LIBS    ${BUILD_STATIC})
+ set(Boost_USE_DEBUG_LIBS     OFF)
+ set(Boost_USE_MULTITHREADED  ON)
+ set(Boost_USE_STATIC_RUNTIME OFF)
++set(MKLROOT "${CMAKE_PREFIX_PATH}")
+ 
+ # list each file specifically 
+ add_executable(regenie 
+@@ -103,32 +64,54 @@ add_executable(regenie
+   ${CMAKE_SOURCE_DIR}/src/MCC.cpp
+   ${CMAKE_SOURCE_DIR}/src/Ordinal.cpp
+   )
+-target_include_directories(regenie PRIVATE ${CMAKE_SOURCE_DIR}/src)
++target_include_directories(regenie PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}/src ${CMAKE_PREFIX_PATH}/include)
+ 
+ set(CMAKE_CXX_FLAGS "-O3 -Wall -pedantic -ffast-math -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-long-long -Wno-c11-extensions -fPIC")
+-add_definitions(-DVERSION_NUMBER="${RG_VERSION}")
+ 
++find_package(OpenMP REQUIRED)
++target_link_libraries(regenie OpenMP::OpenMP_CXX)
+ if("${UNAME_S}" STREQUAL "Linux")
+-  find_package(OpenMP REQUIRED)
+-  target_link_libraries(regenie PRIVATE OpenMP::OpenMP_CXX)
+   if(${BUILD_STATIC})
+-    target_link_options(regenie BEFORE PRIVATE -static-libgcc PRIVATE -static-libstdc++)
++    target_link_options(regenie BEFORE -static-libgcc -static-libstdc++)
+   endif()
+ elseif("${UNAME_S}" STREQUAL "Darwin")
+-    set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -stdlib=libc++")
++  set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -stdlib=libc++")
+ endif()
+ 
+-set(EXTERN_LIBS_PATH "${CMAKE_SOURCE_DIR}/external_libs")
+-target_include_directories(regenie PRIVATE ${EXTERN_LIBS_PATH}/)
++set(EXTERN_LIBS_PATH "${CMAKE_CURRENT_SOURCE_DIR}/external_libs")
++target_include_directories(regenie PUBLIC ${EXTERN_LIBS_PATH}/)
++
++# for BGEN (choose static if present first)
++find_library(ZSTD_LIBRARY zstd REQUIRED)
++find_library(DB_LIBRARY 
++  NAMES libdb.a db 
++  REQUIRED
++  )
++find_library(SQLITE3_LIBRARY sqlite3 REQUIRED)
++find_package(Boost 
++  REQUIRED COMPONENTS system filesystem thread 
++  OPTIONAL_COMPONENTS iostreams
++  )
++find_library(BGEN_LIBRARY 
++  NAMES libbgen.a 
++  REQUIRED
++  )
++target_link_libraries(regenie ${ZSTD_LIBRARY} ${BGEN_LIBRARY} ${DB_LIBRARY} ${SQLITE3_LIBRARY} ${Boost_LIBRARIES})
++target_include_directories(regenie 
++  PUBLIC
++  $<INSTALL_INTERFACE:${CMAKE_INSTALL_INCLUDEDIR}>
++  $<INSTALL_INTERFACE:${CMAKE_INSTALL_INCLUDEDIR}/genfile>
++  $<INSTALL_INTERFACE:${CMAKE_INSTALL_INCLUDEDIR}/db>
++  $<INSTALL_INTERFACE:${BOOST_INCLUDEDIR}>
++  )
++add_definitions(${Boost_DEFINITIONS})
+ 
+-# BGEN library and its dependencies
+-find_library(ZSTD_LIBRARY libzstd.a HINTS "${BGEN_PATH}/build/3rd_party/zstd-1.1.0" REQUIRED)
+-find_library(DB_LIBRARY libdb.a HINTS "${BGEN_PATH}/build/db" REQUIRED)
+-find_library(SQLITE3_LIBRARY libsqlite3.a HINTS "${BGEN_PATH}/build/3rd_party/sqlite3" REQUIRED)
+-find_library(Boost_LIBRARY libboost.a HINTS "${BGEN_PATH}/build/3rd_party/boost_1_55_0" REQUIRED)
+-find_library(BGEN_LIBRARY libbgen.a HINTS "${BGEN_PATH}/build" REQUIRED)
+-target_link_libraries(regenie PRIVATE ${ZSTD_LIBRARY} ${BGEN_LIBRARY} ${DB_LIBRARY} ${SQLITE3_LIBRARY} ${Boost_LIBRARY})
+-target_include_directories(regenie PRIVATE ${BGEN_PATH} ${BGEN_PATH}/genfile/include/ ${BGEN_PATH}/3rd_party/boost_1_55_0/ ${BGEN_PATH}/3rd_party/zstd-1.1.0/lib ${BGEN_PATH}/db/include/ ${BGEN_PATH}/3rd_party/sqlite3)
++# Boost IO
++if(Boost_iostreams_FOUND) 
++  add_definitions(-DHAS_BOOST_IOSTREAM)
++  set(RG_VERSION "${RG_VERSION}.gz" CACHE INTERNAL "Update version")
++  message( STATUS "Will compile with Boost Iostreams library")
++endif()
+ 
+ # MVTNorm library
+ set(MVTN_PATH "${EXTERN_LIBS_PATH}/mvtnorm")
+@@ -137,7 +120,7 @@ add_custom_target(
+    COMMAND make
+    WORKING_DIRECTORY ${MVTN_PATH}
+ )
+-target_link_libraries(regenie PRIVATE ${MVTN_PATH}/libMvtnorm.a)
++target_link_libraries(regenie ${MVTN_PATH}/libMvtnorm.a)
+ add_dependencies(regenie libMvtnorm)
+ 
+ # QF library
+@@ -147,7 +130,7 @@ add_custom_target(
+    COMMAND make
+    WORKING_DIRECTORY ${QF_PATH}
+ )
+-target_link_libraries(regenie PRIVATE ${QF_PATH}/qf.a)
++target_link_libraries(regenie ${QF_PATH}/qf.a)
+ add_dependencies(regenie libqf)
+ 
+ # Quadpack library
+@@ -157,7 +140,7 @@ add_custom_target(
+    COMMAND make
+    WORKING_DIRECTORY ${QUAD_PATH}
+ )
+-target_link_libraries(regenie PRIVATE ${QUAD_PATH}/libquad.a)
++target_link_libraries(regenie ${QUAD_PATH}/libquad.a)
+ add_dependencies(regenie libquad)
+ 
+ # PGEN library
+@@ -167,59 +150,54 @@ add_custom_target(
+    COMMAND make
+    WORKING_DIRECTORY ${PGEN_PATH}
+ )
+-target_link_libraries(regenie PRIVATE ${PGEN_PATH}/pgenlib.a)
+-target_include_directories(regenie PRIVATE ${PGEN_PATH} ${PGEN_PATH}/simde/ ${PGEN_PATH}/include/)
++target_link_libraries(regenie ${PGEN_PATH}/pgenlib.a)
++target_include_directories(regenie PUBLIC ${PGEN_PATH} ${PGEN_PATH}/simde/ ${PGEN_PATH}/include/)
+ add_dependencies(regenie pgenlib)
+ 
+ # Intel MKL
+-if(EXISTS ${MKLROOT}) 
++if(DEFINED MKLROOT) 
+   add_definitions(-DWITH_MKL -DEIGEN_USE_BLAS -DEIGEN_USE_LAPACKE)
+-  target_include_directories(regenie PRIVATE ${MKLROOT}/include/)
+-  if(${BUILD_STATIC}) # specify static libs
+-    find_library(MKL_LP64_LIB libmkl_intel_lp64.a HINTS "${MKLROOT}/lib/intel64" REQUIRED)
+-    find_library(MKL_THREAD_LIB libmkl_gnu_thread.a HINTS "${MKLROOT}/lib/intel64" REQUIRED)
+-    find_library(MKL_CORE_LIB libmkl_core.a HINTS "${MKLROOT}/lib/intel64" REQUIRED)
+-    target_link_libraries(regenie PRIVATE "-Wl,--start-group" ${MKL_LP64_LIB} ${MKL_THREAD_LIB} ${MKL_CORE_LIB} "-Wl,--end-group" -lgomp)
++  target_include_directories(regenie PUBLIC ${MKLROOT}/include/)
++  find_library(MKL_LP64_LIB mkl_intel_lp64 
++    HINTS "${MKLROOT}/lib/" 
++    REQUIRED
++    )
++  if("${UNAME_S}" STREQUAL "Linux")
++    find_library(MKL_THREAD_LIB mkl_gnu_thread 
++      HINTS "${MKLROOT}/lib/" 
++      REQUIRED
++      )
++  elseif("${UNAME_S}" STREQUAL "Darwin")
++    find_library(MKL_THREAD_LIB mkl_intel_thread 
++      HINTS "${MKLROOT}/lib/" 
++      REQUIRED
++      )
++  endif()
++  find_library(MKL_CORE_LIB mkl_core 
++    HINTS "${MKLROOT}/lib/" 
++    REQUIRED
++    )
++  if("${UNAME_S}" STREQUAL "Darwin")
++    target_link_libraries(regenie ${MKL_LP64_LIB} ${MKL_THREAD_LIB} ${MKL_CORE_LIB})
++  elseif(${BUILD_STATIC})
++    target_link_libraries(regenie "-Wl,--start-group" ${MKL_LP64_LIB} ${MKL_THREAD_LIB} ${MKL_CORE_LIB} "-Wl,--end-group" -lgomp)
+   else() # use dynamic libs
+-    find_library(MKL_LP64_LIB mkl_intel_lp64 PATHS "${MKLROOT}/lib/intel64" REQUIRED)
+-    find_library(MKL_THREAD_LIB mkl_gnu_thread PATHS "${MKLROOT}/lib/intel64" REQUIRED)
+-    find_library(MKL_CORE_LIB mkl_core PATHS "${MKLROOT}/lib/intel64" REQUIRED)
+-    target_link_libraries(regenie PRIVATE "-Wl,--no-as-needed" ${MKL_LP64_LIB} ${MKL_THREAD_LIB} ${MKL_CORE_LIB} -lgomp)
++    target_link_libraries(regenie "-Wl,--no-as-needed" ${MKL_LP64_LIB} ${MKL_THREAD_LIB} ${MKL_CORE_LIB} -lgomp)
+   endif()
+-elseif(EXISTS ${OPENBLAS_ROOT}) # OpenBLAS
+-  add_definitions(-DWITH_OPENBLAS -DEIGEN_USE_BLAS -DEIGEN_USE_LAPACKE)
+-  target_include_directories(regenie PRIVATE ${OPENBLAS_ROOT}/include/)
+-  find_library(LAPACK_LIB lapack REQUIRED)
+-  find_library(BLAS_LIB openblas HINTS "${OPENBLAS_ROOT}/lib/" REQUIRED)
+-  target_link_libraries(regenie PRIVATE ${LAPACK_LIB} -llapacke ${BLAS_LIB})
++  message( STATUS "Will compile with Intel MKL library")
+ endif()
+ 
+ # cxxopts (header-only)
+-target_include_directories(regenie PRIVATE ${EXTERN_LIBS_PATH}/cxxopts/include/)
++target_include_directories(regenie PUBLIC ${CMAKE_SOURCE_DIR}/external_libs/cxxopts/include/)
+ 
+ # LBFGS (header-only)
+-target_include_directories(regenie PRIVATE ${EXTERN_LIBS_PATH}/LBFGSpp/include/)
++target_include_directories(regenie PUBLIC ${CMAKE_SOURCE_DIR}/external_libs/LBFGSpp/include/)
+ 
+ # Eigen (header-only)
+-target_include_directories(regenie PRIVATE ${EXTERN_LIBS_PATH}/eigen-3.4.0/)
+-
+-# Boost IO
+-if(${HAS_BOOST_IOSTREAM}) 
+-  if("${UNAME_S}" STREQUAL "Darwin")
+-    find_library(BOOST_LIB_IO libboost_iostreams libboost_iostreams.a REQUIRED)
+-    target_link_libraries(regenie PRIVATE ${BOOST_LIB_IO})
+-  elseif(${BUILD_STATIC})
+-    find_library(BOOST_LIB_IO libboost_iostreams.a REQUIRED)
+-    target_link_libraries(regenie PRIVATE ${BOOST_LIB_IO})
+-  else()
+-    target_link_libraries(regenie PRIVATE -lboost_iostreams)
+-  endif()
+-  add_definitions(-DHAS_BOOST_IOSTREAM)
+-  message( STATUS "Will compile with Boost Iostreams library")
+-endif()
++target_include_directories(regenie PUBLIC ${CMAKE_SOURCE_DIR}/external_libs/eigen-3.4.0/)
+ 
+ # Other libraries
+-find_library(ZLIB_LIBRARY libz.a z REQUIRED)
++find_library(ZLIB_LIBRARY z REQUIRED)
+ find_library(M_LIB m REQUIRED) 
+ find_library(DL_LIB dl REQUIRED) 
+ if("${UNAME_S}" STREQUAL "Linux")
+@@ -227,14 +205,16 @@ if("${UNAME_S}" STREQUAL "Linux")
+ elseif("${UNAME_S}" STREQUAL "Darwin")
+   find_library(GFORTRAN_LIBRARY gfortran REQUIRED)
+ endif()
+-target_link_libraries(regenie PRIVATE ${ZLIB_LIBRARY} ${M_LIB} ${DL_LIB} ${PTHREAD_LIB} ${GFORTRAN_LIBRARY})
++target_link_libraries(regenie ${ZLIB_LIBRARY} ${M_LIB} ${DL_LIB} ${PTHREAD_LIB} ${GFORTRAN_LIBRARY})
+ 
+-install(TARGETS regenie RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR})
++add_definitions(-DVERSION_NUMBER="${RG_VERSION}")
++install(TARGETS regenie RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR} OPTIONAL)
+ message( STATUS "REGENIE v" ${RG_VERSION})
+ 
+-add_custom_target(full-clean
+-  COMMAND cd "${MVTN_PATH}" && make clean
+-  COMMAND cd "${QF_PATH}" && make clean
+-  COMMAND cd "${QUAD_PATH}" && make clean
+-  COMMAND cd "${PGEN_PATH}" && make clean
+-  )
++write_basic_package_version_file(${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}-config-version.cmake COMPATIBILITY SameMajorVersion)
++install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}-config-version.cmake DESTINATION share/${PROJECT_NAME})
++
++set(CPACK_PACKAGE_VERSION_MAJOR ${PROJECT_VERSION_MAJOR})
++set(CPACK_PACKAGE_VERSION_MINOR ${PROJECT_VERSION_MINOR})
++set(CPACK_PACKAGE_VERSION_PATCH ${PROJECT_VERSION_PATCH})
++include(CPack)
diff --git a/recipes/regenie/patches/0012-update-cmakelist-file-for-v3.4.patch b/recipes/regenie/patches/0012-update-cmakelist-file-for-v3.4.patch
new file mode 100644
index 0000000000000..0e6278d726201
--- /dev/null
+++ b/recipes/regenie/patches/0012-update-cmakelist-file-for-v3.4.patch
@@ -0,0 +1,348 @@
+From 918db42f41961bd4556662ade1edc6ca3378da7f Mon Sep 17 00:00:00 2001
+From: Joelle Mbatchou <joelle.mbatchou@regeneron.com>
+Date: Thu, 14 Dec 2023 17:33:24 -0500
+Subject: [PATCH] pdate cmakelist file for v3.4
+
+---
+ CMakeLists.txt | 243 +++++++++++++++++++------------------------------
+ 1 file changed, 94 insertions(+), 149 deletions(-)
+
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index 5bb60d3..3609ab4 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -1,11 +1,3 @@
+-# For Intel MKL, set MKLROOT=<MKL_path> when running cmake
+-#   e.g. MKLROOT=/opt/mkl/ cmake -S regenie_dir/ -B regenie_dir/build/
+-# For OpenBLAS, set OPENBLAS_ROOT=<OpenBLAS_path> when running cmake
+-#   note: it also requires lapacke library
+-# For static compilation on Linux systems, set STATIC=1 when running cmake
+-#   -> this excludes GLIBC
+-
+-
+ cmake_minimum_required(VERSION 3.13)
+ 
+ # detect OS architecture
+@@ -33,57 +25,16 @@ set(CMAKE_CXX_EXTENSIONS OFF)  # Ensures -std=c++11
+ ######################################
+ ######## check input variables
+ 
+-# check BGEN_PATH
+-if("$ENV{BGEN_PATH}" STREQUAL "")
+-  message( FATAL_ERROR "Must specify path to BGEN library in 'BGEN_PATH'")
+-else()
+-  set(BGEN_PATH "$ENV{BGEN_PATH}" CACHE INTERNAL "Set BGEN library path")
+-  if (NOT EXISTS ${BGEN_PATH})
+-    message( FATAL_ERROR "Specified BGEN library directory '${BGEN_PATH}' does not exist")
+-  endif()
+-endif()
+-
+ # check for static compilation
+-if($ENV{STATIC})
++if(BUILD_SHARED_LIBS)
++  set(BUILD_STATIC OFF CACHE INTERNAL "Dynamic compilation")
++  set(Boost_USE_STATIC_LIBS OFF)
++else()
+   set(BUILD_STATIC ON CACHE INTERNAL "Static compilation")
++  set(Boost_USE_STATIC_LIBS ON)
+   message( STATUS "Static compilation mode")
+ endif()
+ 
+-# check Boost IOStreams
+-if($ENV{HAS_BOOST_IOSTREAM})
+-  set(HAS_BOOST_IOSTREAM 1 CACHE INTERNAL "Add Boost IO")
+-  set(RG_VERSION "${RG_VERSION}.gz" CACHE INTERNAL "Update version")
+-else()
+-  set(HAS_BOOST_IOSTREAM 0 CACHE INTERNAL "Skip Boost IO")
+-endif()
+-
+-# check MKL
+-if(NOT "$ENV{MKLROOT}" STREQUAL "")
+-  set(MKLROOT "$ENV{MKLROOT}" CACHE INTERNAL "Set MKL library path")
+-  if (NOT EXISTS ${MKLROOT})
+-    message( FATAL_ERROR "Specified MKL library directory '${MKLROOT}' does not exist")
+-  endif()
+-  message( STATUS "Will compile with Intel MKL library")
+-endif()
+-
+-# check HTSlib
+-if(NOT "$ENV{HTSLIB_PATH}" STREQUAL "")
+-  set(HTSLIB_PATH "$ENV{HTSLIB_PATH}" CACHE INTERNAL "Set HTSlib library path")
+-  if (NOT EXISTS ${HTSLIB_PATH})
+-    message( FATAL_ERROR "Specified HTSlib library directory '${HTSLIB_PATH}' does not exist")
+-  endif()
+-  message( STATUS "Will compile with HTSlib")
+-endif()
+-
+-# check OpenBLAS
+-if(NOT "$ENV{OPENBLAS_ROOT}" STREQUAL "")
+-  set(OPENBLAS_ROOT "$ENV{OPENBLAS_ROOT}" CACHE INTERNAL "Set OpenBLAS library path")
+-  if (NOT EXISTS ${OPENBLAS_ROOT})
+-    message( FATAL_ERROR "Specified OpenBLAS library directory '${OPENBLAS_ROOT}' does not exist")
+-  endif()
+-  message( STATUS "Will compile with OpenBLAS library")
+-endif()
+-
+ ######################################
+ ######## set flags and required libraries
+ 
+@@ -92,9 +43,10 @@ set(Boost_USE_STATIC_LIBS    ${BUILD_STATIC})
+ set(Boost_USE_DEBUG_LIBS     OFF)
+ set(Boost_USE_MULTITHREADED  ON)
+ set(Boost_USE_STATIC_RUNTIME OFF)
++set(MKLROOT "${CMAKE_PREFIX_PATH}")
+ 
+-# list each file specifically
+-add_executable(regenie
++# list each file specifically 
++add_executable(regenie 
+   ${CMAKE_SOURCE_DIR}/src/Data.cpp
+   ${CMAKE_SOURCE_DIR}/src/Files.cpp
+   ${CMAKE_SOURCE_DIR}/src/Geno.cpp
+@@ -112,32 +64,54 @@ add_executable(regenie
+   ${CMAKE_SOURCE_DIR}/src/MCC.cpp
+   ${CMAKE_SOURCE_DIR}/src/Ordinal.cpp
+   )
+-target_include_directories(regenie PRIVATE ${CMAKE_SOURCE_DIR}/src)
++target_include_directories(regenie PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}/src ${CMAKE_PREFIX_PATH}/include)
+ 
+ set(CMAKE_CXX_FLAGS "-O3 -Wall -pedantic -ffast-math -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-long-long -Wno-c11-extensions -fPIC")
+-add_definitions(-DVERSION_NUMBER="${RG_VERSION}")
+ 
++find_package(OpenMP REQUIRED)
++target_link_libraries(regenie OpenMP::OpenMP_CXX)
+ if("${UNAME_S}" STREQUAL "Linux")
+-  find_package(OpenMP REQUIRED)
+-  target_link_libraries(regenie PRIVATE OpenMP::OpenMP_CXX)
+   if(${BUILD_STATIC})
+-    target_link_options(regenie BEFORE PRIVATE -static-libgcc PRIVATE -static-libstdc++)
++    target_link_options(regenie BEFORE -static-libgcc -static-libstdc++)
+   endif()
+ elseif("${UNAME_S}" STREQUAL "Darwin")
+-    set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -stdlib=libc++")
++  set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -stdlib=libc++")
+ endif()
+ 
+-set(EXTERN_LIBS_PATH "${CMAKE_SOURCE_DIR}/external_libs")
+-target_include_directories(regenie PRIVATE ${EXTERN_LIBS_PATH}/)
++set(EXTERN_LIBS_PATH "${CMAKE_CURRENT_SOURCE_DIR}/external_libs")
++target_include_directories(regenie PUBLIC ${EXTERN_LIBS_PATH}/)
++
++# for BGEN (choose static if present first)
++find_library(ZSTD_LIBRARY zstd REQUIRED)
++find_library(DB_LIBRARY 
++  NAMES libdb.a db 
++  REQUIRED
++  )
++find_library(SQLITE3_LIBRARY sqlite3 REQUIRED)
++find_package(Boost 
++  REQUIRED COMPONENTS system filesystem thread 
++  OPTIONAL_COMPONENTS iostreams
++  )
++find_library(BGEN_LIBRARY 
++  NAMES libbgen.a 
++  REQUIRED
++  )
++target_link_libraries(regenie ${ZSTD_LIBRARY} ${BGEN_LIBRARY} ${DB_LIBRARY} ${SQLITE3_LIBRARY} ${Boost_LIBRARIES})
++target_include_directories(regenie 
++  PUBLIC
++  $<INSTALL_INTERFACE:${CMAKE_INSTALL_INCLUDEDIR}>
++  $<INSTALL_INTERFACE:${CMAKE_INSTALL_INCLUDEDIR}/genfile>
++  $<INSTALL_INTERFACE:${CMAKE_INSTALL_INCLUDEDIR}/db>
++  $<INSTALL_INTERFACE:${BOOST_INCLUDEDIR}>
++  )
++add_definitions(${Boost_DEFINITIONS})
+ 
+-# BGEN library and its dependencies
+-find_library(ZSTD_LIBRARY libzstd.a HINTS "${BGEN_PATH}/build/3rd_party/zstd-1.1.0" REQUIRED)
+-find_library(DB_LIBRARY libdb.a HINTS "${BGEN_PATH}/build/db" REQUIRED)
+-find_library(SQLITE3_LIBRARY libsqlite3.a HINTS "${BGEN_PATH}/build/3rd_party/sqlite3" REQUIRED)
+-find_library(Boost_LIBRARY libboost.a HINTS "${BGEN_PATH}/build/3rd_party/boost_1_55_0" REQUIRED)
+-find_library(BGEN_LIBRARY libbgen.a HINTS "${BGEN_PATH}/build" REQUIRED)
+-target_link_libraries(regenie PRIVATE ${ZSTD_LIBRARY} ${BGEN_LIBRARY} ${DB_LIBRARY} ${SQLITE3_LIBRARY} ${Boost_LIBRARY})
+-target_include_directories(regenie PRIVATE ${BGEN_PATH} ${BGEN_PATH}/genfile/include/ ${BGEN_PATH}/3rd_party/boost_1_55_0/ ${BGEN_PATH}/3rd_party/zstd-1.1.0/lib ${BGEN_PATH}/db/include/ ${BGEN_PATH}/3rd_party/sqlite3)
++# Boost IO
++if(Boost_iostreams_FOUND) 
++  add_definitions(-DHAS_BOOST_IOSTREAM)
++  set(RG_VERSION "${RG_VERSION}.gz" CACHE INTERNAL "Update version")
++  message( STATUS "Will compile with Boost Iostreams library")
++endif()
+ 
+ # MVTNorm library
+ set(MVTN_PATH "${EXTERN_LIBS_PATH}/mvtnorm")
+@@ -146,7 +120,7 @@ add_custom_target(
+    COMMAND make
+    WORKING_DIRECTORY ${MVTN_PATH}
+ )
+-target_link_libraries(regenie PRIVATE ${MVTN_PATH}/libMvtnorm.a)
++target_link_libraries(regenie ${MVTN_PATH}/libMvtnorm.a)
+ add_dependencies(regenie libMvtnorm)
+ 
+ # QF library
+@@ -156,7 +130,7 @@ add_custom_target(
+    COMMAND make
+    WORKING_DIRECTORY ${QF_PATH}
+ )
+-target_link_libraries(regenie PRIVATE ${QF_PATH}/qf.a)
++target_link_libraries(regenie ${QF_PATH}/qf.a)
+ add_dependencies(regenie libqf)
+ 
+ # Quadpack library
+@@ -166,7 +140,7 @@ add_custom_target(
+    COMMAND make
+    WORKING_DIRECTORY ${QUAD_PATH}
+ )
+-target_link_libraries(regenie PRIVATE ${QUAD_PATH}/libquad.a)
++target_link_libraries(regenie ${QUAD_PATH}/libquad.a)
+ add_dependencies(regenie libquad)
+ 
+ # PGEN library
+@@ -176,100 +150,71 @@ add_custom_target(
+    COMMAND make
+    WORKING_DIRECTORY ${PGEN_PATH}
+ )
+-target_link_libraries(regenie PRIVATE ${PGEN_PATH}/pgenlib.a)
+-target_include_directories(regenie PRIVATE ${PGEN_PATH} ${PGEN_PATH}/simde/ ${PGEN_PATH}/include/)
++target_link_libraries(regenie ${PGEN_PATH}/pgenlib.a)
++target_include_directories(regenie PUBLIC ${PGEN_PATH} ${PGEN_PATH}/simde/ ${PGEN_PATH}/include/)
+ add_dependencies(regenie pgenlib)
+ 
+-# REMETA library
+-if(EXISTS ${HTSLIB_PATH})
+-  set(REMETA_PATH "${EXTERN_LIBS_PATH}/remeta")
+-  add_custom_target(
+-     remeta
+-     COMMAND make HTSLIB_PATH=${HTSLIB_PATH}
+-     WORKING_DIRECTORY ${REMETA_PATH}
+-  )
+-  target_link_libraries(regenie PUBLIC ${REMETA_PATH}/remeta.a)
+-  target_include_directories(regenie PUBLIC ${REMETA_PATH})
+-  add_dependencies(regenie remeta)
+-
+-  add_definitions(-DWITH_HTSLIB)
+-  find_library(HTSLIB libhts.a HINTS ${HTSLIB_PATH})
+-  target_link_libraries(regenie PUBLIC ${HTSLIB})
+-endif()
+-
+ # Intel MKL
+-if(EXISTS ${MKLROOT})
++if(DEFINED MKLROOT) 
+   add_definitions(-DWITH_MKL -DEIGEN_USE_BLAS -DEIGEN_USE_LAPACKE)
+-  target_include_directories(regenie PRIVATE ${MKLROOT}/include/)
+-  if(${BUILD_STATIC}) # specify static libs
+-    find_library(MKL_LP64_LIB libmkl_intel_lp64.a HINTS "${MKLROOT}/lib/intel64" REQUIRED)
+-    find_library(MKL_THREAD_LIB libmkl_gnu_thread.a HINTS "${MKLROOT}/lib/intel64" REQUIRED)
+-    find_library(MKL_CORE_LIB libmkl_core.a HINTS "${MKLROOT}/lib/intel64" REQUIRED)
+-    target_link_libraries(regenie PRIVATE "-Wl,--start-group" ${MKL_LP64_LIB} ${MKL_THREAD_LIB} ${MKL_CORE_LIB} "-Wl,--end-group" -lgomp)
++  target_include_directories(regenie PUBLIC ${MKLROOT}/include/)
++  find_library(MKL_LP64_LIB mkl_intel_lp64 
++    HINTS "${MKLROOT}/lib/" 
++    REQUIRED
++    )
++  if("${UNAME_S}" STREQUAL "Linux")
++    find_library(MKL_THREAD_LIB mkl_gnu_thread 
++      HINTS "${MKLROOT}/lib/" 
++      REQUIRED
++      )
++  elseif("${UNAME_S}" STREQUAL "Darwin")
++    find_library(MKL_THREAD_LIB mkl_intel_thread 
++      HINTS "${MKLROOT}/lib/" 
++      REQUIRED
++      )
++  endif()
++  find_library(MKL_CORE_LIB mkl_core 
++    HINTS "${MKLROOT}/lib/" 
++    REQUIRED
++    )
++  if("${UNAME_S}" STREQUAL "Darwin")
++    target_link_libraries(regenie ${MKL_LP64_LIB} ${MKL_THREAD_LIB} ${MKL_CORE_LIB})
++  elseif(${BUILD_STATIC})
++    target_link_libraries(regenie "-Wl,--start-group" ${MKL_LP64_LIB} ${MKL_THREAD_LIB} ${MKL_CORE_LIB} "-Wl,--end-group" -lgomp)
+   else() # use dynamic libs
+-    find_library(MKL_LP64_LIB mkl_intel_lp64 PATHS "${MKLROOT}/lib/intel64" REQUIRED)
+-    find_library(MKL_THREAD_LIB mkl_gnu_thread PATHS "${MKLROOT}/lib/intel64" REQUIRED)
+-    find_library(MKL_CORE_LIB mkl_core PATHS "${MKLROOT}/lib/intel64" REQUIRED)
+-    target_link_libraries(regenie PRIVATE "-Wl,--no-as-needed" ${MKL_LP64_LIB} ${MKL_THREAD_LIB} ${MKL_CORE_LIB} -lgomp)
++    target_link_libraries(regenie "-Wl,--no-as-needed" ${MKL_LP64_LIB} ${MKL_THREAD_LIB} ${MKL_CORE_LIB} -lgomp)
+   endif()
+-elseif(EXISTS ${OPENBLAS_ROOT}) # OpenBLAS
+-  add_definitions(-DWITH_OPENBLAS -DEIGEN_USE_BLAS -DEIGEN_USE_LAPACKE)
+-  target_include_directories(regenie PRIVATE ${OPENBLAS_ROOT}/include/)
+-  find_library(LAPACK_LIB lapack REQUIRED)
+-  find_library(BLAS_LIB openblas HINTS "${OPENBLAS_ROOT}/lib/" REQUIRED)
+-  target_link_libraries(regenie PRIVATE ${LAPACK_LIB} -llapacke ${BLAS_LIB})
++  message( STATUS "Will compile with Intel MKL library")
+ endif()
+ 
+ # cxxopts (header-only)
+-target_include_directories(regenie PRIVATE ${EXTERN_LIBS_PATH}/cxxopts/include/)
++target_include_directories(regenie PUBLIC ${CMAKE_SOURCE_DIR}/external_libs/cxxopts/include/)
+ 
+ # LBFGS (header-only)
+-target_include_directories(regenie PRIVATE ${EXTERN_LIBS_PATH}/LBFGSpp/include/)
++target_include_directories(regenie PUBLIC ${CMAKE_SOURCE_DIR}/external_libs/LBFGSpp/include/)
+ 
+ # Eigen (header-only)
+-target_include_directories(regenie PRIVATE ${EXTERN_LIBS_PATH}/eigen-3.4.0/)
+-
+-# Boost IO
+-if(${HAS_BOOST_IOSTREAM})
+-  if("${UNAME_S}" STREQUAL "Darwin")
+-    find_library(BOOST_LIB_IO libboost_iostreams libboost_iostreams.a REQUIRED)
+-    target_link_libraries(regenie PRIVATE ${BOOST_LIB_IO})
+-  elseif(${BUILD_STATIC})
+-    find_library(BOOST_LIB_IO libboost_iostreams.a REQUIRED)
+-    target_link_libraries(regenie PRIVATE ${BOOST_LIB_IO})
+-  else()
+-    target_link_libraries(regenie PRIVATE -lboost_iostreams)
+-  endif()
+-  add_definitions(-DHAS_BOOST_IOSTREAM)
+-  message( STATUS "Will compile with Boost Iostreams library")
+-endif()
++target_include_directories(regenie PUBLIC ${CMAKE_SOURCE_DIR}/external_libs/eigen-3.4.0/)
+ 
+ # Other libraries
+-find_library(ZLIB_LIBRARY libz.a z REQUIRED)
+-find_library(M_LIB m REQUIRED)
+-find_library(DL_LIB dl REQUIRED)
+-find_library(BZ2_LIB libbz2.so)
+-find_library(LZMA_LIB liblzma.so)
+-find_library(CURL_LIB libcurl.so)
+-find_library(CRYPTO_LIB libcrypto.so)
++find_library(ZLIB_LIBRARY z REQUIRED)
++find_library(M_LIB m REQUIRED) 
++find_library(DL_LIB dl REQUIRED) 
+ if("${UNAME_S}" STREQUAL "Linux")
+   set(GFORTRAN_LIBRARY "-lgfortran")
+ elseif("${UNAME_S}" STREQUAL "Darwin")
+   find_library(GFORTRAN_LIBRARY gfortran REQUIRED)
+ endif()
+-target_link_libraries(
+-  regenie PRIVATE
+-  ${ZLIB_LIBRARY} ${M_LIB} ${DL_LIB} ${PTHREAD_LIB}
+-  ${BZ2_LIB} ${LZMA_LIB}
+-  ${CURL_LIB} ${CRYPTO_LIB} ${GFORTRAN_LIBRARY}
+-)
++target_link_libraries(regenie ${ZLIB_LIBRARY} ${M_LIB} ${DL_LIB} ${PTHREAD_LIB} ${GFORTRAN_LIBRARY})
+ 
+-install(TARGETS regenie RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR})
++add_definitions(-DVERSION_NUMBER="${RG_VERSION}")
++install(TARGETS regenie RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR} OPTIONAL)
+ message( STATUS "REGENIE v" ${RG_VERSION})
+ 
+-add_custom_target(full-clean
+-  COMMAND cd "${MVTN_PATH}" && make clean
+-  COMMAND cd "${QF_PATH}" && make clean
+-  COMMAND cd "${QUAD_PATH}" && make clean
+-  COMMAND cd "${PGEN_PATH}" && make clean
+-  )
++write_basic_package_version_file(${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}-config-version.cmake COMPATIBILITY SameMajorVersion)
++install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}-config-version.cmake DESTINATION share/${PROJECT_NAME})
++
++set(CPACK_PACKAGE_VERSION_MAJOR ${PROJECT_VERSION_MAJOR})
++set(CPACK_PACKAGE_VERSION_MINOR ${PROJECT_VERSION_MINOR})
++set(CPACK_PACKAGE_VERSION_PATCH ${PROJECT_VERSION_PATCH})
++include(CPack)
+-- 
+2.34.1
+
diff --git a/recipes/regenie/patches/0013-update-cmakelist-file-for-v3.4.1.patch b/recipes/regenie/patches/0013-update-cmakelist-file-for-v3.4.1.patch
new file mode 100644
index 0000000000000..a3072766dad91
--- /dev/null
+++ b/recipes/regenie/patches/0013-update-cmakelist-file-for-v3.4.1.patch
@@ -0,0 +1,343 @@
+From 40a095edbac9478fe818b43ae49c0d5e958d632f Mon Sep 17 00:00:00 2001
+From: Joelle Mbatchou <joelle.mbatchou@regeneron.com>
+Date: Thu, 1 Feb 2024 17:14:05 -0500
+Subject: [PATCH] update cmakelist file for v3.4.1
+
+---
+ CMakeLists.txt | 228 +++++++++++++++++++++----------------------------
+ 1 file changed, 95 insertions(+), 133 deletions(-)
+ mode change 100755 => 100644 CMakeLists.txt
+
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+old mode 100755
+new mode 100644
+index 4368ce0..2dc15fd
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -1,11 +1,3 @@
+-# For Intel MKL, set MKLROOT=<MKL_path> when running cmake
+-#   e.g. MKLROOT=/opt/mkl/ cmake -S regenie_dir/ -B regenie_dir/build/
+-# For OpenBLAS, set OPENBLAS_ROOT=<OpenBLAS_path> when running cmake
+-#   note: it also requires lapacke library
+-# For static compilation on Linux systems, set STATIC=1 when running cmake
+-#   -> this excludes GLIBC
+-
+-
+ cmake_minimum_required(VERSION 3.13)
+ 
+ # detect OS architecture
+@@ -33,57 +25,16 @@ set(CMAKE_CXX_EXTENSIONS OFF)  # Ensures -std=c++11
+ ######################################
+ ######## check input variables
+ 
+-# check BGEN_PATH
+-if("$ENV{BGEN_PATH}" STREQUAL "")
+-  message( FATAL_ERROR "Must specify path to BGEN library in 'BGEN_PATH'")
+-else()
+-  set(BGEN_PATH "$ENV{BGEN_PATH}" CACHE INTERNAL "Set BGEN library path")
+-  if (NOT EXISTS ${BGEN_PATH})
+-    message( FATAL_ERROR "Specified BGEN library directory '${BGEN_PATH}' does not exist")
+-  endif()
+-endif()
+-
+ # check for static compilation
+-if($ENV{STATIC})
++if(BUILD_SHARED_LIBS)
++  set(BUILD_STATIC OFF CACHE INTERNAL "Dynamic compilation")
++  set(Boost_USE_STATIC_LIBS OFF)
++else()
+   set(BUILD_STATIC ON CACHE INTERNAL "Static compilation")
++  set(Boost_USE_STATIC_LIBS ON)
+   message( STATUS "Static compilation mode")
+ endif()
+ 
+-# check Boost IOStreams
+-if($ENV{HAS_BOOST_IOSTREAM})
+-  set(HAS_BOOST_IOSTREAM 1 CACHE INTERNAL "Add Boost IO")
+-  set(RG_VERSION "${RG_VERSION}.gz" CACHE INTERNAL "Update version")
+-else()
+-  set(HAS_BOOST_IOSTREAM 0 CACHE INTERNAL "Skip Boost IO")
+-endif()
+-
+-# check MKL
+-if(NOT "$ENV{MKLROOT}" STREQUAL "")
+-  set(MKLROOT "$ENV{MKLROOT}" CACHE INTERNAL "Set MKL library path")
+-  if (NOT EXISTS ${MKLROOT})
+-    message( FATAL_ERROR "Specified MKL library directory '${MKLROOT}' does not exist")
+-  endif()
+-  message( STATUS "Will compile with Intel MKL library")
+-endif()
+-
+-# check HTSlib
+-if(NOT "$ENV{HTSLIB_PATH}" STREQUAL "")
+-  set(HTSLIB_PATH "$ENV{HTSLIB_PATH}" CACHE INTERNAL "Set HTSlib library path")
+-  if (NOT EXISTS ${HTSLIB_PATH})
+-    message( FATAL_ERROR "Specified HTSlib library directory '${HTSLIB_PATH}' does not exist")
+-  endif()
+-  message( STATUS "Will compile with HTSlib")
+-endif()
+-
+-# check OpenBLAS
+-if(NOT "$ENV{OPENBLAS_ROOT}" STREQUAL "")
+-  set(OPENBLAS_ROOT "$ENV{OPENBLAS_ROOT}" CACHE INTERNAL "Set OpenBLAS library path")
+-  if (NOT EXISTS ${OPENBLAS_ROOT})
+-    message( FATAL_ERROR "Specified OpenBLAS library directory '${OPENBLAS_ROOT}' does not exist")
+-  endif()
+-  message( STATUS "Will compile with OpenBLAS library")
+-endif()
+-
+ ######################################
+ ######## set flags and required libraries
+ 
+@@ -92,9 +43,10 @@ set(Boost_USE_STATIC_LIBS    ${BUILD_STATIC})
+ set(Boost_USE_DEBUG_LIBS     OFF)
+ set(Boost_USE_MULTITHREADED  ON)
+ set(Boost_USE_STATIC_RUNTIME OFF)
++set(MKLROOT "${CMAKE_PREFIX_PATH}")
+ 
+-# list each file specifically
+-add_executable(regenie
++# list each file specifically 
++add_executable(regenie 
+   ${CMAKE_SOURCE_DIR}/src/Data.cpp
+   ${CMAKE_SOURCE_DIR}/src/Files.cpp
+   ${CMAKE_SOURCE_DIR}/src/Geno.cpp
+@@ -112,32 +64,54 @@ add_executable(regenie
+   ${CMAKE_SOURCE_DIR}/src/MCC.cpp
+   ${CMAKE_SOURCE_DIR}/src/Ordinal.cpp
+   )
+-target_include_directories(regenie PRIVATE ${CMAKE_SOURCE_DIR}/src)
++target_include_directories(regenie PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}/src ${CMAKE_PREFIX_PATH}/include)
+ 
+ set(CMAKE_CXX_FLAGS "-O3 -Wall -pedantic -ffast-math -Wno-unused-local-typedefs -Wno-deprecated-declarations -Wno-long-long -Wno-c11-extensions -fPIC")
+-add_definitions(-DVERSION_NUMBER="${RG_VERSION}")
+ 
++find_package(OpenMP REQUIRED)
++target_link_libraries(regenie OpenMP::OpenMP_CXX)
+ if("${UNAME_S}" STREQUAL "Linux")
+-  find_package(OpenMP REQUIRED)
+-  target_link_libraries(regenie PRIVATE OpenMP::OpenMP_CXX)
+   if(${BUILD_STATIC})
+-    target_link_options(regenie BEFORE PRIVATE -static-libgcc PRIVATE -static-libstdc++)
++    target_link_options(regenie BEFORE -static-libgcc -static-libstdc++)
+   endif()
+ elseif("${UNAME_S}" STREQUAL "Darwin")
+-    set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -stdlib=libc++")
++  set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -stdlib=libc++")
+ endif()
+ 
+-set(EXTERN_LIBS_PATH "${CMAKE_SOURCE_DIR}/external_libs")
+-target_include_directories(regenie PRIVATE ${EXTERN_LIBS_PATH}/)
++set(EXTERN_LIBS_PATH "${CMAKE_CURRENT_SOURCE_DIR}/external_libs")
++target_include_directories(regenie PUBLIC ${EXTERN_LIBS_PATH}/)
++
++# for BGEN (choose static if present first)
++find_library(ZSTD_LIBRARY zstd REQUIRED)
++find_library(DB_LIBRARY 
++  NAMES libdb.a db 
++  REQUIRED
++  )
++find_library(SQLITE3_LIBRARY sqlite3 REQUIRED)
++find_package(Boost 
++  REQUIRED COMPONENTS system filesystem thread 
++  OPTIONAL_COMPONENTS iostreams
++  )
++find_library(BGEN_LIBRARY 
++  NAMES libbgen.a 
++  REQUIRED
++  )
++target_link_libraries(regenie ${ZSTD_LIBRARY} ${BGEN_LIBRARY} ${DB_LIBRARY} ${SQLITE3_LIBRARY} ${Boost_LIBRARIES})
++target_include_directories(regenie 
++  PUBLIC
++  $<INSTALL_INTERFACE:${CMAKE_INSTALL_INCLUDEDIR}>
++  $<INSTALL_INTERFACE:${CMAKE_INSTALL_INCLUDEDIR}/genfile>
++  $<INSTALL_INTERFACE:${CMAKE_INSTALL_INCLUDEDIR}/db>
++  $<INSTALL_INTERFACE:${BOOST_INCLUDEDIR}>
++  )
++add_definitions(${Boost_DEFINITIONS})
+ 
+-# BGEN library and its dependencies
+-find_library(ZSTD_LIBRARY libzstd.a HINTS "${BGEN_PATH}/build/3rd_party/zstd-1.1.0" REQUIRED)
+-find_library(DB_LIBRARY libdb.a HINTS "${BGEN_PATH}/build/db" REQUIRED)
+-find_library(SQLITE3_LIBRARY libsqlite3.a HINTS "${BGEN_PATH}/build/3rd_party/sqlite3" REQUIRED)
+-find_library(Boost_LIBRARY libboost.a HINTS "${BGEN_PATH}/build/3rd_party/boost_1_55_0" REQUIRED)
+-find_library(BGEN_LIBRARY libbgen.a HINTS "${BGEN_PATH}/build" REQUIRED)
+-target_link_libraries(regenie PRIVATE ${ZSTD_LIBRARY} ${BGEN_LIBRARY} ${DB_LIBRARY} ${SQLITE3_LIBRARY} ${Boost_LIBRARY})
+-target_include_directories(regenie PRIVATE ${BGEN_PATH} ${BGEN_PATH}/genfile/include/ ${BGEN_PATH}/3rd_party/boost_1_55_0/ ${BGEN_PATH}/3rd_party/zstd-1.1.0/lib ${BGEN_PATH}/db/include/ ${BGEN_PATH}/3rd_party/sqlite3)
++# Boost IO
++if(Boost_iostreams_FOUND) 
++  add_definitions(-DHAS_BOOST_IOSTREAM)
++  set(RG_VERSION "${RG_VERSION}.gz" CACHE INTERNAL "Update version")
++  message( STATUS "Will compile with Boost Iostreams library")
++endif()
+ 
+ # MVTNorm library
+ set(MVTN_PATH "${EXTERN_LIBS_PATH}/mvtnorm")
+@@ -146,7 +120,7 @@ add_custom_target(
+    COMMAND make
+    WORKING_DIRECTORY ${MVTN_PATH}
+ )
+-target_link_libraries(regenie PRIVATE ${MVTN_PATH}/libMvtnorm.a)
++target_link_libraries(regenie ${MVTN_PATH}/libMvtnorm.a)
+ add_dependencies(regenie libMvtnorm)
+ 
+ # QF library
+@@ -156,7 +130,7 @@ add_custom_target(
+    COMMAND make
+    WORKING_DIRECTORY ${QF_PATH}
+ )
+-target_link_libraries(regenie PRIVATE ${QF_PATH}/qf.a)
++target_link_libraries(regenie ${QF_PATH}/qf.a)
+ add_dependencies(regenie libqf)
+ 
+ # Quadpack library
+@@ -166,7 +140,7 @@ add_custom_target(
+    COMMAND make
+    WORKING_DIRECTORY ${QUAD_PATH}
+ )
+-target_link_libraries(regenie PRIVATE ${QUAD_PATH}/libquad.a)
++target_link_libraries(regenie ${QUAD_PATH}/libquad.a)
+ add_dependencies(regenie libquad)
+ 
+ # PGEN library
+@@ -176,12 +150,12 @@ add_custom_target(
+    COMMAND make
+    WORKING_DIRECTORY ${PGEN_PATH}
+ )
+-target_link_libraries(regenie PRIVATE ${PGEN_PATH}/pgenlib.a)
+-target_include_directories(regenie PRIVATE ${PGEN_PATH} ${PGEN_PATH}/simde/ ${PGEN_PATH}/include/)
++target_link_libraries(regenie ${PGEN_PATH}/pgenlib.a)
++target_include_directories(regenie PUBLIC ${PGEN_PATH} ${PGEN_PATH}/simde/ ${PGEN_PATH}/include/)
+ add_dependencies(regenie pgenlib)
+ 
+ # REMETA library
+-if(EXISTS ${HTSLIB_PATH})
++if(DEFINED HTSLIB_PATH)
+   set(REMETA_PATH "${EXTERN_LIBS_PATH}/remeta")
+   add_custom_target(
+      remeta
+@@ -198,78 +172,66 @@ if(EXISTS ${HTSLIB_PATH})
+ endif()
+ 
+ # Intel MKL
+-if(EXISTS ${MKLROOT})
++if(DEFINED MKLROOT) 
+   add_definitions(-DWITH_MKL -DEIGEN_USE_BLAS -DEIGEN_USE_LAPACKE)
+-  target_include_directories(regenie PRIVATE ${MKLROOT}/include/)
+-  if(${BUILD_STATIC}) # specify static libs
+-    find_library(MKL_LP64_LIB libmkl_intel_lp64.a HINTS "${MKLROOT}/lib/intel64" REQUIRED)
+-    find_library(MKL_THREAD_LIB libmkl_gnu_thread.a HINTS "${MKLROOT}/lib/intel64" REQUIRED)
+-    find_library(MKL_CORE_LIB libmkl_core.a HINTS "${MKLROOT}/lib/intel64" REQUIRED)
+-    target_link_libraries(regenie PRIVATE "-Wl,--start-group" ${MKL_LP64_LIB} ${MKL_THREAD_LIB} ${MKL_CORE_LIB} "-Wl,--end-group" -lgomp)
++  target_include_directories(regenie PUBLIC ${MKLROOT}/include/)
++  find_library(MKL_LP64_LIB mkl_intel_lp64 
++    HINTS "${MKLROOT}/lib/" 
++    REQUIRED
++    )
++  if("${UNAME_S}" STREQUAL "Linux")
++    find_library(MKL_THREAD_LIB mkl_gnu_thread 
++      HINTS "${MKLROOT}/lib/" 
++      REQUIRED
++      )
++  elseif("${UNAME_S}" STREQUAL "Darwin")
++    find_library(MKL_THREAD_LIB mkl_intel_thread 
++      HINTS "${MKLROOT}/lib/" 
++      REQUIRED
++      )
++  endif()
++  find_library(MKL_CORE_LIB mkl_core 
++    HINTS "${MKLROOT}/lib/" 
++    REQUIRED
++    )
++  if("${UNAME_S}" STREQUAL "Darwin")
++    target_link_libraries(regenie ${MKL_LP64_LIB} ${MKL_THREAD_LIB} ${MKL_CORE_LIB})
++  elseif(${BUILD_STATIC})
++    target_link_libraries(regenie "-Wl,--start-group" ${MKL_LP64_LIB} ${MKL_THREAD_LIB} ${MKL_CORE_LIB} "-Wl,--end-group" -lgomp)
+   else() # use dynamic libs
+-    find_library(MKL_LP64_LIB mkl_intel_lp64 PATHS "${MKLROOT}/lib/intel64" REQUIRED)
+-    find_library(MKL_THREAD_LIB mkl_gnu_thread PATHS "${MKLROOT}/lib/intel64" REQUIRED)
+-    find_library(MKL_CORE_LIB mkl_core PATHS "${MKLROOT}/lib/intel64" REQUIRED)
+-    target_link_libraries(regenie PRIVATE "-Wl,--no-as-needed" ${MKL_LP64_LIB} ${MKL_THREAD_LIB} ${MKL_CORE_LIB} -lgomp)
++    target_link_libraries(regenie "-Wl,--no-as-needed" ${MKL_LP64_LIB} ${MKL_THREAD_LIB} ${MKL_CORE_LIB} -lgomp)
+   endif()
+-elseif(EXISTS ${OPENBLAS_ROOT}) # OpenBLAS
+-  add_definitions(-DWITH_OPENBLAS -DEIGEN_USE_BLAS -DEIGEN_USE_LAPACKE)
+-  target_include_directories(regenie PRIVATE ${OPENBLAS_ROOT}/include/)
+-  find_library(LAPACK_LIB lapack REQUIRED)
+-  find_library(BLAS_LIB openblas HINTS "${OPENBLAS_ROOT}/lib/" REQUIRED)
+-  target_link_libraries(regenie PRIVATE ${LAPACK_LIB} -llapacke ${BLAS_LIB})
++  message( STATUS "Will compile with Intel MKL library")
+ endif()
+ 
+ # cxxopts (header-only)
+-target_include_directories(regenie PRIVATE ${EXTERN_LIBS_PATH}/cxxopts/include/)
++target_include_directories(regenie PUBLIC ${CMAKE_SOURCE_DIR}/external_libs/cxxopts/include/)
+ 
+ # LBFGS (header-only)
+-target_include_directories(regenie PRIVATE ${EXTERN_LIBS_PATH}/LBFGSpp/include/)
++target_include_directories(regenie PUBLIC ${CMAKE_SOURCE_DIR}/external_libs/LBFGSpp/include/)
+ 
+ # Eigen (header-only)
+-target_include_directories(regenie PRIVATE ${EXTERN_LIBS_PATH}/eigen-3.4.0/)
+-
+-# Boost IO
+-if(${HAS_BOOST_IOSTREAM})
+-  if("${UNAME_S}" STREQUAL "Darwin")
+-    find_library(BOOST_LIB_IO libboost_iostreams libboost_iostreams.a REQUIRED)
+-    target_link_libraries(regenie PRIVATE ${BOOST_LIB_IO})
+-  elseif(${BUILD_STATIC})
+-    find_library(BOOST_LIB_IO libboost_iostreams.a REQUIRED)
+-    target_link_libraries(regenie PRIVATE ${BOOST_LIB_IO})
+-  else()
+-    target_link_libraries(regenie PRIVATE -lboost_iostreams)
+-  endif()
+-  add_definitions(-DHAS_BOOST_IOSTREAM)
+-  message( STATUS "Will compile with Boost Iostreams library")
+-endif()
++target_include_directories(regenie PUBLIC ${CMAKE_SOURCE_DIR}/external_libs/eigen-3.4.0/)
+ 
+ # Other libraries
+-find_library(ZLIB_LIBRARY libz.a z REQUIRED)
+-find_library(M_LIB m REQUIRED)
+-find_library(DL_LIB dl REQUIRED)
+-find_library(BZ2_LIB bz2)
+-find_library(LZMA_LIB lzma)
+-find_library(CURL_LIB curl)
+-find_library(CRYPTO_LIB crypto)
++find_library(ZLIB_LIBRARY z REQUIRED)
++find_library(M_LIB m REQUIRED) 
++find_library(DL_LIB dl REQUIRED) 
+ if("${UNAME_S}" STREQUAL "Linux")
+   set(GFORTRAN_LIBRARY "-lgfortran")
+ elseif("${UNAME_S}" STREQUAL "Darwin")
+   find_library(GFORTRAN_LIBRARY gfortran REQUIRED)
+ endif()
+-target_link_libraries(
+-  regenie PRIVATE
+-  ${ZLIB_LIBRARY} ${M_LIB} ${DL_LIB} ${PTHREAD_LIB}
+-  ${BZ2_LIB} ${LZMA_LIB}
+-  ${CURL_LIB} ${CRYPTO_LIB} ${GFORTRAN_LIBRARY}
+-)
++target_link_libraries(regenie ${ZLIB_LIBRARY} ${M_LIB} ${DL_LIB} ${PTHREAD_LIB} ${GFORTRAN_LIBRARY})
+ 
+-install(TARGETS regenie RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR})
++add_definitions(-DVERSION_NUMBER="${RG_VERSION}")
++install(TARGETS regenie RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR} OPTIONAL)
+ message( STATUS "REGENIE v" ${RG_VERSION})
+ 
+-add_custom_target(full-clean
+-  COMMAND cd "${MVTN_PATH}" && make clean
+-  COMMAND cd "${QF_PATH}" && make clean
+-  COMMAND cd "${QUAD_PATH}" && make clean
+-  COMMAND cd "${PGEN_PATH}" && make clean
+-  )
++write_basic_package_version_file(${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}-config-version.cmake COMPATIBILITY SameMajorVersion)
++install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}-config-version.cmake DESTINATION share/${PROJECT_NAME})
++
++set(CPACK_PACKAGE_VERSION_MAJOR ${PROJECT_VERSION_MAJOR})
++set(CPACK_PACKAGE_VERSION_MINOR ${PROJECT_VERSION_MINOR})
++set(CPACK_PACKAGE_VERSION_PATCH ${PROJECT_VERSION_PATCH})
++include(CPack)
+-- 
+2.34.1
+
diff --git a/recipes/reneo/meta.yaml b/recipes/reneo/meta.yaml
new file mode 100644
index 0000000000000..78b5f9f67c1bf
--- /dev/null
+++ b/recipes/reneo/meta.yaml
@@ -0,0 +1,52 @@
+{% set name = "reneo" %}
+{% set version = "0.2.0" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://github.com/Vini2/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz"
+  sha256: 69a19c0043e722453da1a0c7fe280998707f30d05c555afcbdff0174115e574b
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - reneo=reneo.__main__:main
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('reneo', max_pin="x") }}
+
+requirements:
+  host:
+    - python <3.11
+    - pip
+  run:
+    - python <3.11
+    - snakemake-minimal >=7.14.0
+    - pyyaml >=6.0
+    - click >=8.1.3
+    - jinja2 >=3.0.2
+    - mamba <1.4.2
+    - metasnek >=0.0.5
+    - snaketool-utils >=0.0.3
+
+test:
+  commands:
+    - reneo --help
+
+about:
+  home: "https://github.com/Vini2/phables"
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "Reneo: Unraveling Viral Genomes from Metagenomes"
+  description: |
+    Reneo recovers high-quality genomes from viral communities (including both prokaryotic and eukaryotic viruses) found within metagenomes.
+  doc_url: "https://github.com/Vini2/reneo"
+  dev_url: "https://github.com/Vini2/reneo"
+
+extra:
+  recipe-maintainers:
+    - Vini2
diff --git a/recipes/repeatmasker/meta.yaml b/recipes/repeatmasker/meta.yaml
index 3d176290714eb..c837404507fa1 100644
--- a/recipes/repeatmasker/meta.yaml
+++ b/recipes/repeatmasker/meta.yaml
@@ -11,8 +11,10 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 0
+  number: 1
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('repeatmasker', max_pin='x.x.x') }}
 
 requirements:
   host:
diff --git a/recipes/repeatmasker/post-link.sh b/recipes/repeatmasker/post-link.sh
index b357c667894e7..ac28ed8558b30 100755
--- a/recipes/repeatmasker/post-link.sh
+++ b/recipes/repeatmasker/post-link.sh
@@ -1,7 +1,17 @@
 #!/bin/bash
 
-echo "Downloading Dfam_curatedonly.h5.gz from www.dfam.org"
-wget -O Dfam_curatedonly.h5.gz https://www.dfam.org/releases/Dfam_3.7/families/Dfam_curatedonly.h5.gz
+if [ -f /.dockerenv ]; then
+    cat >> "$PREFIX/.messages.txt" <<EOF
+To install the databases needed by RepeatMasker, execute:
 
-zcat Dfam_curatedonly.h5.gz > ${PREFIX}/share/RepeatMasker/Libraries/Dfam.h5
+wget -O Dfam_curatedonly.h5.gz https://www.dfam.org/releases/Dfam_3.7/families/Dfam_curatedonly.h5.gz
+gunzip -c Dfam_curatedonly.h5.gz > ${PREFIX}/share/RepeatMasker/Libraries/Dfam.h5
 rm Dfam_curatedonly.h5.gz
+
+EOF
+else
+    echo "Downloading Dfam_curatedonly.h5.gz from www.dfam.org"
+    wget -O Dfam_curatedonly.h5.gz https://www.dfam.org/releases/Dfam_3.7/families/Dfam_curatedonly.h5.gz
+    gunzip -c Dfam_curatedonly.h5.gz > ${PREFIX}/share/RepeatMasker/Libraries/Dfam.h5
+    rm Dfam_curatedonly.h5.gz
+fi
diff --git a/recipes/repeatmodeler/meta.yaml b/recipes/repeatmodeler/meta.yaml
index 3e655e02cce92..ebcbe17e9442e 100644
--- a/recipes/repeatmodeler/meta.yaml
+++ b/recipes/repeatmodeler/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "RepeatModeler" %}
-{% set version = "2.0.4" %}
-{% set sha256 = "94aad46cc70911d48de3001836fc3165adb95b2b282b5c53ab0d1da98c27a6b6" %}
+{% set version = "2.0.5" %}
+{% set sha256 = "4c005ada7e88ff944116832349580a0dc3db762dc1c91235fa574b32ea9a8452" %}
 
 package:
   name: "{{ name|lower }}"
@@ -15,6 +15,8 @@ source:
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('repeatmodeler', max_pin="x") }}
 
 requirements:
   host:
@@ -43,7 +45,7 @@ requirements:
     - ucsc-twobitinfo
     - ucsc-twobittofa
     - ucsc-fatotwobit
-    - ninja-nj    # [not osx]
+    - ninja-nj
 
 test:
   files:
diff --git a/recipes/repic/meta.yaml b/recipes/repic/meta.yaml
index ee5b327647b06..9e6b03404fbc2 100644
--- a/recipes/repic/meta.yaml
+++ b/recipes/repic/meta.yaml
@@ -1,20 +1,19 @@
-{% set version = "0.2.0" %}
+{% set version = "0.2.1" %}
 
 package:
-  name:               repic
-  version:            {{ version }}
+  name: repic
+  version: {{ version }}
 
 source:
-  url:                https://github.com/ccameron/REPIC/archive/v{{ version }}.zip
-  sha256:             4770709f0f94a708856a04650bdd6f8482c3562c254b4bd80f498c8dea67ef4f
+  url: https://github.com/ccameron/REPIC/archive/v{{ version }}.zip
+  sha256: fd77f660bf6e1fe10138c145d2aa67b69fd4ff30f249047ee49460a185407633
 
 requirements:
   host:
     - python >=3.8.16
     - pip
-
   run:
-    - python
+    - python >=3.8.16
     - matplotlib-base >=3.2.2
     - mrcfile >=1.4.3
     - networkx >=2.8.4
@@ -24,11 +23,13 @@ requirements:
     - tqdm
 
 build:
-  noarch:             python
-  number:             0
+  noarch: python
+  number: 0
   entry_points:
     - repic = repic.main:main
-  script:             {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
+  script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
+  run_exports:
+    - {{ pin_subpackage('repic', max_pin="x") }}
 
 test:
   commands:
diff --git a/recipes/resfinder/build.sh b/recipes/resfinder/build.sh
index 9cecba2f5985c..3c65803ffd5ac 100644
--- a/recipes/resfinder/build.sh
+++ b/recipes/resfinder/build.sh
@@ -1,10 +1,6 @@
 #!/bin/bash
 
-mkdir -p ${PREFIX}/bin
-
-cp *.py ${PREFIX}/bin
-chmod +x ${PREFIX}/bin/*.py
-cp -r cge/ ${PREFIX}/bin/
+${PYTHON} -m pip install . -vvv --no-deps --no-build-isolation
 
 # create folder for database download
 target=${PREFIX}/share/${PKG_NAME}-${PKG_VERSION}
diff --git a/recipes/resfinder/meta.yaml b/recipes/resfinder/meta.yaml
index a4795a5d6cf2c..6614f72cec293 100644
--- a/recipes/resfinder/meta.yaml
+++ b/recipes/resfinder/meta.yaml
@@ -1,47 +1,54 @@
-{% set name = "ResFinder" %}
-{% set version = "4.1.11" %}
-{% set sha256 = "e312ff8dc23f329baf8b0a4dc3c41f0006778772e8f736086cf12d03bc76c9c8" %}
+{% set name = "resfinder" %}
+{% set version = "4.5.0" %}
 
 package:
-  name: '{{ name|lower }}'
-  version: '{{ version }}'
+  name: {{ name|lower }}
+  version: {{ version }}
 
 source:
-  url: https://bitbucket.org/genomicepidemiology/{{ name|lower }}/get/{{ version }}.tar.gz
-  sha256: '{{ sha256 }}'
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/resfinder-{{ version }}.tar.gz
+  sha256: 7c2ad096c2f5f746607c4433d327f890776aba996f86112dc4527fc3c2bc0ec4
   patches:
     - python_path.patch
-    - remove_version_git_tag.patch
 
 build:
   number: 0
-  noarch: generic
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage('resfinder', max_pin="x") }}
 
 requirements:
   host:
-    - git
-    - kma
+    - python >=3.8
+    - pip
+    - pdm-pep517 >=0.12.0
   run:
-    - python >=3
+    - python >=3.8
+    # Needs cgelib in conda-forge/bioconda
+    - cgelib >=0.7.3
+    - cgecore ==1.5.6
+    - tabulate >=0.8.9
+    - pandas >=1.4.2
+    - biopython >=1.79
+    - python-dateutil
     - kma
-    - biopython
     - blast >=2.8.1
-    - cgecore 1.5.5
-    - tabulate 0.7.7
-    - gitpython
-    - python-dateutil
     - git
 
 test:
+  imports:
+    - resfinder
   commands:
-    - run_resfinder.py --help
+    - python -m resfinder --help
 
 about:
   home: https://bitbucket.org/genomicepidemiology/resfinder
-  license: APACHE-2.0
+  summary: "ResFinder identifies acquired antimicrobial resistance genes in total or partial sequenced isolates of bacteria."
+  license: Apache-2.0
   license_family: APACHE
-  license_file: LICENSE-2.0.txt
-  summary: ResFinder identifies acquired antimicrobial resistance genes in total or partial sequenced isolates of bacteria.
+  license_file: LICENSE
 
 extra:
   notes: "ResFinder requires databases that can be downloaded with download-db.sh."
+  identifiers:
+    - doi:10.1093/jac/dkaa345
diff --git a/recipes/resfinder/python_path.patch b/recipes/resfinder/python_path.patch
index a6b2bea47370b..59543ff0ea533 100644
--- a/recipes/resfinder/python_path.patch
+++ b/recipes/resfinder/python_path.patch
@@ -1,8 +1,8 @@
---- run_resfinder.py.old	2022-03-24 02:00:31.990686268 -0500
-+++ run_resfinder.py	2022-03-24 02:01:00.924797159 -0500
+--- a/src/resfinder/run_resfinder.py
++++ b/src/resfinder/run_resfinder.py
 @@ -1,4 +1,4 @@
 -#!/usr/bin/env python3
 +#!/opt/anaconda1anaconda2anaconda3/bin/python
+ import io
  import sys
  import os
- import re
diff --git a/recipes/resfinder/remove_version_git_tag.patch b/recipes/resfinder/remove_version_git_tag.patch
deleted file mode 100644
index f1b80390791fe..0000000000000
--- a/recipes/resfinder/remove_version_git_tag.patch
+++ /dev/null
@@ -1,36 +0,0 @@
---- run_resfinder.py.old	2022-03-24 02:18:37.191844209 -0500
-+++ run_resfinder.py	2022-03-24 02:19:40.497086660 -0500
-@@ -27,24 +27,6 @@
- # #########                                 FUNCTIONS               ######### #
- # ########################################################################### #
- 
--def get_git_tag():
--    git_folders_path = os.path.dirname(os.path.realpath(__file__))
--    try:
--        git_tag = str(
--            subprocess.check_output(
--                ['git', 'describe', '--tags', '--abbrev=0'],
--                stderr=subprocess.STDOUT, cwd=git_folders_path,
--            )).strip('\'b\\n')
--    except subprocess.CalledProcessError as exc_info:
--        match = re.search(
--            'fatal: no tag exactly matches \'(?P<commit>[a-z0-9]+)\'', str(exc_info.output))
--        if match:
--            raise Exception(
--                'Bailing: there is no git tag for the current commit, {commit}'.format(
--                commit=match.group('commit')))
--        raise Exception(str(exc_info.output))
--    return git_tag
--
- def eprint(*args, **kwargs):
-     print(*args, file=sys.stderr, **kwargs)
- 
-@@ -178,7 +160,7 @@
-                           ResFinder will be used.",
-                     type=float,
-                     default=None)
--parser.add_argument("-v", "--version", action="version", version=get_git_tag(),
-+parser.add_argument("-v", "--version", action="version", version="4.1.11",
-                     help="Show program's version number and exit")
- # Temporary option only available temporary
- parser.add_argument("--pickle",
diff --git a/recipes/resistify/meta.yaml b/recipes/resistify/meta.yaml
new file mode 100644
index 0000000000000..4cd79689492b0
--- /dev/null
+++ b/recipes/resistify/meta.yaml
@@ -0,0 +1,44 @@
+{% set name = "resistify" %}
+{% set version = "0.2.2" %}
+
+package:
+  name: "{{ name }}"
+  version: "{{ version }}"
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: 2fd3e8e8c45711d1a4a054727053fb284f8034ec921e7f14e7d5b8a16800c326
+
+build:
+  noarch: python
+  number: 0
+  entry_points:
+    - resistify = resistify.main:main
+  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  host:
+    - pip
+    - python >=3.9
+    - hatchling
+  run:
+    - python >=3.9
+    - scikit-learn ==0.24.2
+    - biopython
+    - numpy
+    - rich
+    - rich-argparse
+    - hmmer
+
+test:
+  imports:
+    - resistify
+  commands:
+    - resistify --help
+
+about:
+  home: https://github.com/swiftseal/resistify
+  license: MIT
+  summary: A resistance gene annotation tool
diff --git a/recipes/reviewer/LICENSE.txt b/recipes/reviewer/LICENSE.txt
new file mode 100644
index 0000000000000..f288702d2fa16
--- /dev/null
+++ b/recipes/reviewer/LICENSE.txt
@@ -0,0 +1,674 @@
+                    GNU GENERAL PUBLIC LICENSE
+                       Version 3, 29 June 2007
+
+ Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/>
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+                            Preamble
+
+  The GNU General Public License is a free, copyleft license for
+software and other kinds of works.
+
+  The licenses for most software and other practical works are designed
+to take away your freedom to share and change the works.  By contrast,
+the GNU General Public License is intended to guarantee your freedom to
+share and change all versions of a program--to make sure it remains free
+software for all its users.  We, the Free Software Foundation, use the
+GNU General Public License for most of our software; it applies also to
+any other work released this way by its authors.  You can apply it to
+your programs, too.
+
+  When we speak of free software, we are referring to freedom, not
+price.  Our General Public Licenses are designed to make sure that you
+have the freedom to distribute copies of free software (and charge for
+them if you wish), that you receive source code or can get it if you
+want it, that you can change the software or use pieces of it in new
+free programs, and that you know you can do these things.
+
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+
+  To do so, attach the following notices to the program.  It is safest
+to attach them to the start of each source file to most effectively
+state the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+    <one line to give the program's name and a brief idea of what it does.>
+    Copyright (C) <year>  <name of author>
+
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+Also add information on how to contact you by electronic and paper mail.
+
+  If the program does terminal interaction, make it output a short
+notice like this when it starts in an interactive mode:
+
+    <program>  Copyright (C) <year>  <name of author>
+    This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+    This is free software, and you are welcome to redistribute it
+    under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License.  Of course, your program's commands
+might be different; for a GUI interface, you would use an "about box".
+
+  You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+<https://www.gnu.org/licenses/>.
+
+  The GNU General Public License does not permit incorporating your program
+into proprietary programs.  If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library.  If this is what you want to do, use the GNU Lesser General
+Public License instead of this License.  But first, please read
+<https://www.gnu.org/licenses/why-not-lgpl.html>.
diff --git a/recipes/reviewer/build.sh b/recipes/reviewer/build.sh
new file mode 100644
index 0000000000000..bddd1b6140eae
--- /dev/null
+++ b/recipes/reviewer/build.sh
@@ -0,0 +1,8 @@
+#!/bin/sh
+
+mkdir build
+cd build
+cmake -DCMAKE_INSTALL_PREFIX="$PREFIX" -DCMAKE_BUILD_TYPE=Release ..
+cmake --build .
+mkdir -p $PREFIX/bin
+install -m 755 install/bin/REViewer $PREFIX/bin
diff --git a/recipes/reviewer/cpp-fixes.patch b/recipes/reviewer/cpp-fixes.patch
new file mode 100644
index 0000000000000..db3341103708e
--- /dev/null
+++ b/recipes/reviewer/cpp-fixes.patch
@@ -0,0 +1,25 @@
+diff --git a/reviewer/app/Workflow.cpp b/reviewer/app/Workflow.cpp
+index 3954aca71..badd1b2e8 100644
+--- a/reviewer/app/Workflow.cpp
++++ b/reviewer/app/Workflow.cpp
+@@ -21,6 +21,7 @@
+ #include "Workflow.hh"
+ 
+ #include <set>
++#include <sstream>
+ 
+ #include <boost/algorithm/string.hpp>
+ 
+diff --git a/reviewer/thirdparty/graph-tools/src/graphcore/GraphCoordinates.cpp b/reviewer/thirdparty/graph-tools/src/graphcore/GraphCoordinates.cpp
+index 2550eda8b..622243c4e 100644
+--- a/reviewer/thirdparty/graph-tools/src/graphcore/GraphCoordinates.cpp
++++ b/reviewer/thirdparty/graph-tools/src/graphcore/GraphCoordinates.cpp
+@@ -22,6 +22,8 @@
+ #include "graphutils/PairHashing.hh"
+ 
+ #include <cassert>
++#include <algorithm>
++#include <limits>
+ 
+ namespace graphtools
+ {
diff --git a/recipes/reviewer/external-libs.patch b/recipes/reviewer/external-libs.patch
new file mode 100644
index 0000000000000..bfd12a58d692a
--- /dev/null
+++ b/recipes/reviewer/external-libs.patch
@@ -0,0 +1,115 @@
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index 022aa4d90..a2da3de32 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -5,67 +5,12 @@ set(CMAKE_CXX_STANDARD 11)
+ set(CMAKE_CXX_STANDARD_REQUIRED ON)
+ 
+ # Check for required packages:
+-find_package(ZLIB REQUIRED)
+-find_package(BZip2 REQUIRED)
+-find_package(LibLZMA REQUIRED)
+ 
+ include(ExternalProject)
+ 
+ set(installDir ${CMAKE_CURRENT_BINARY_DIR}/install)
+ 
+ 
+-ExternalProject_Add(htslib
+-	BUILD_IN_SOURCE YES
+-	URL https://github.com/samtools/htslib/releases/download/1.10.2/htslib-1.10.2.tar.bz2
+-	CONFIGURE_COMMAND ./configure --prefix=${installDir} --disable-libcurl
+-	BUILD_COMMAND $(MAKE) lib-static
+-)
+-
+-
+-# Setup boost user config so that it uses the same c++ compiler as other components:
+-if(CMAKE_CXX_COMPILER_ID STREQUAL "GNU")
+-	set (BOOST_COMPILER_TAG "gcc")
+-elseif(CMAKE_CXX_COMPILER_ID STREQUAL "Clang")
+-	set (BOOST_COMPILER_TAG "clang")
+-	set(B2_OPTIONS ${B2_OPTIONS} "toolset=clang")
+-elseif(CMAKE_CXX_COMPILER_ID STREQUAL "AppleClang")
+-	set (BOOST_COMPILER_TAG "darwin")
+-	set(B2_OPTIONS ${B2_OPTIONS} "toolset=clang")
+-endif()
+-
+-if (BOOST_COMPILER_TAG)
+-	set(BOOST_UCONFIG "${CMAKE_BINARY_DIR}/user-config.jam")
+-	file(WRITE "${BOOST_UCONFIG}" "using ${BOOST_COMPILER_TAG} : : \"${CMAKE_CXX_COMPILER}\" ;\n")
+-	set(BOOST_PATCH_COMMAND ${CMAKE_COMMAND} -E copy ${BOOST_UCONFIG} tools/build/src/user-config.jam)
+-endif()
+-
+-ExternalProject_Add(Boost
+-	BUILD_IN_SOURCE YES
+-	URL https://boostorg.jfrog.io/artifactory/main/release/1.73.0/source/boost_1_73_0.tar.bz2
+-	PATCH_COMMAND ${BOOST_PATCH_COMMAND}
+-	CONFIGURE_COMMAND ./bootstrap.sh --prefix=${installDir}
+-	BUILD_COMMAND ./b2 install -j8 --with-filesystem --with-system --with-program_options link=static ${B2_OPTIONS}
+-	INSTALL_COMMAND ""
+-)
+-
+-
+-ExternalProject_Add(spdlog
+-	URL https://github.com/gabime/spdlog/archive/refs/tags/v1.6.1.tar.gz
+-	CMAKE_ARGS -DCMAKE_INSTALL_PREFIX:PATH=${installDir}
+-		-DCMAKE_C_COMPILER=${CMAKE_C_COMPILER}
+-		-DCMAKE_CXX_COMPILER=${CMAKE_CXX_COMPILER}
+-)
+-
+-
+-ExternalProject_Add(catch2
+-	URL https://github.com/catchorg/Catch2/archive/refs/tags/v2.12.4.tar.gz
+-	CMAKE_ARGS -DCMAKE_INSTALL_PREFIX:PATH=${installDir}
+-		-DCMAKE_C_COMPILER=${CMAKE_C_COMPILER}
+-		-DCMAKE_CXX_COMPILER=${CMAKE_CXX_COMPILER}
+-		-DBUILD_TESTING=OFF
+-)
+-
+-
+ ExternalProject_Add(reviewer
+ 	SOURCE_DIR ${CMAKE_SOURCE_DIR}/reviewer
+ 	BUILD_ALWAYS YES
+@@ -78,5 +23,5 @@ ExternalProject_Add(reviewer
+ 
+ 
+ ExternalProject_Add_StepDependencies(reviewer configure
+-	Boost spdlog htslib catch2)
++	)
+ 
+diff --git a/reviewer/CMakeLists.txt b/reviewer/CMakeLists.txt
+index c7602afa0..b7fa22539 100644
+--- a/reviewer/CMakeLists.txt
++++ b/reviewer/CMakeLists.txt
+@@ -10,16 +10,12 @@ if (NOT CMAKE_BUILD_TYPE)
+             "Choose the type of build (default: ${DEFAULT_CMAKE_BUILD_TYPE})" FORCE)
+ endif ()
+ 
+-set(Boost_USE_STATIC_LIBS ON)
+ find_package(Boost 1.73 REQUIRED COMPONENTS program_options filesystem system)
+ 
+ find_package(spdlog REQUIRED)
+-find_package(ZLIB REQUIRED)
+-find_package(BZip2 REQUIRED)
+-find_package(LibLZMA REQUIRED)
+-find_package(CURL REQUIRED)
+ find_package(Catch2 REQUIRED)
+ find_package(Threads REQUIRED)
++find_package(fmt)
+ find_library(htslib libhts.a)
+ find_library(htslib hts)
+ 
+@@ -82,11 +78,8 @@ target_link_libraries(REViewer PUBLIC
+         Core
+         Metrics
+         ${STATIC_FLAGS}
+-        ${htslib}
+-        ${LIBLZMA_LIBRARIES}
+-        ${CURL_LIBRARIES}
+-        ZLIB::ZLIB
+-        BZip2::BZip2
++        hts
++        fmt::fmt
+         Threads::Threads)
+ 
+ 
diff --git a/recipes/reviewer/meta.yaml b/recipes/reviewer/meta.yaml
new file mode 100644
index 0000000000000..52ae1ed20bb7f
--- /dev/null
+++ b/recipes/reviewer/meta.yaml
@@ -0,0 +1,51 @@
+{% set version = "0.2.7" %}
+{% set sha256 = "8411c40028907b0294b1899cd20af6934325796da160511b649044ecf9a5169f" %}
+
+package:
+  name: reviewer
+  version: '{{ version }}'
+
+source:
+  url: https://github.com/Illumina/REViewer/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: '{{ sha256 }}'
+  patches:
+    - cpp-fixes.patch
+    - external-libs.patch
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_compatible('reviewer', max_pin="x.x") }}
+  ignore_run_exports:
+    - spdlog  # This library is header-only
+
+requirements:
+  build:
+    - {{ compiler('cxx') }}
+    - make
+    - cmake
+  host:
+    - boost-cpp
+    - catch2 <3
+    - fmt
+    - htslib
+    - spdlog
+  run:
+    - boost-cpp
+
+test:
+  commands:
+    - REViewer --help
+
+about:
+  home: https://github.com/Illumina/REViewer
+  license: GPL-3.0
+  license_family: GPL
+  license_file: LICENSE.txt
+  summary: A tool for visualizing alignments of reads in regions containing tandem repeats
+
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - doi:10.1186/s13073-022-01085-z
diff --git a/recipes/revoluzer/build.sh b/recipes/revoluzer/build.sh
new file mode 100644
index 0000000000000..175ed562969c8
--- /dev/null
+++ b/recipes/revoluzer/build.sh
@@ -0,0 +1,9 @@
+#!/bin/bash
+CXXFLAGS="-I${BUILD_PREFIX}/include $CXXFLAGS"
+
+
+cmake -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -H. -Bbuild -DCMAKE_BUILD_TYPE=Generic -DEXTRA_FLAGS='-march=sandybridge -Ofast'
+cmake --build build
+mkdir -p $PREFIX/bin
+echo "installing: $(find build/src -type f -executable)"
+mv $(find build/src -type f -executable) $PREFIX/bin
diff --git a/recipes/revoluzer/meta.yaml b/recipes/revoluzer/meta.yaml
new file mode 100644
index 0000000000000..cd6b24a8f9070
--- /dev/null
+++ b/recipes/revoluzer/meta.yaml
@@ -0,0 +1,44 @@
+{% set name = "revoluzer" %}
+{% set version = "0.1.6" %}
+
+package:
+  name: "{{ name }}"
+  version: "{{ version }}"
+
+source:
+  url: https://gitlab.com/Bernt/{{ name }}/-/archive/{{ version }}/{{ name }}-{{ version }}.tar.gz
+  sha256: a3c73aa21c1f1d63e40939568bd963690a0df24ccfe7ba6df28ca7ef49dd3b94
+
+build:
+  number: 0
+  skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage('revoluzer', max_pin="x") }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - cmake
+    - make
+    - boost-cpp
+    - glpk
+  host:
+  run:
+    - boost-cpp
+    - glpk
+
+test:
+  commands:
+    - crex --help
+    - trex -h
+
+about:
+  home: https://gitlab.com/Bernt/revoluzer/
+  license: GPL-3.0-or-later
+  license_file: LICENSE
+  summary: Genome rearrangement analysis tools
+
+extra:
+  recipe-maintainers:
+    - bernt-matthias
diff --git a/recipes/rgi/meta.yaml b/recipes/rgi/meta.yaml
index 44b96d333b301..abfe223b51225 100644
--- a/recipes/rgi/meta.yaml
+++ b/recipes/rgi/meta.yaml
@@ -1,7 +1,7 @@
 {% set name = "rgi" %}
-{% set version = "6.0.2" %}
-{% set sha256 = "1487b4a3f506851f7b3e7976df916ff9189c0fa09cf39994d3e0d5d82a11e45f" %}
-{% set sha256database = "dd02b8c6d86fc1c3c83402a8985b765eeacd80c9f10d200138e775adc793fb08" %}
+{% set version = "6.0.3" %}
+{% set sha256 = "e2fb66119a1cabc2e0769c868c7908107f7f5904ae34c28bad9ee814ca39ea41" %}
+{% set sha256database = "b9052bb9f5fa84c488a52254fdd7e9080c7e31f1817c01b3f3d9261f9e4f0afd" %}
 
 package:
   name: {{ name }}
@@ -10,20 +10,22 @@ package:
 source:
     - url: https://github.com/arpcard/rgi/archive/{{ version }}.tar.gz
       sha256: {{ sha256 }}
-    - url: https://card.mcmaster.ca/download/0/broadstreet-v3.2.5.tar.bz2
+    - url: https://card.mcmaster.ca/download/0/broadstreet-v3.2.7.tar.bz2
       sha256: {{ sha256database }}
       folder: card-data
 
 build:
   noarch: python
-  number: 0
+  number: 1
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   host:
     #- python >=3.5,<3.7
     - python >=3.5
     - pip
-    - blast 2.9.0
+    - blast >=2.9.0
     - six >=1.7.0
     - zlib
     - prodigal 2.6.3
@@ -48,12 +50,13 @@ requirements:
     - lxml ==4.6.5
     - wget
     - dask
-    - pyrodigal >=2.0.0
+    # pyrodigal v3 renamed OrfFinder to GeneFinder, please review on future RGI releases
+    - pyrodigal >=2.0.0,<3
   run:
     # RGI requires these exact versions of blast prodigal and diamond, or else --alignment_mode DIAMOND fails
     # - python >=3.5,<3.7
     - python >=3.5
-    - blast 2.9.0
+    - blast >=2.9.0
     - six >=1.7.0
     - zlib
     - prodigal 2.6.3
@@ -78,7 +81,8 @@ requirements:
     - lxml ==4.6.5
     - wget
     - dask
-    - pyrodigal >=2.0.0
+    # pyrodigal v3 renamed OrfFinder to GeneFinder, please review on future RGI releases
+    - pyrodigal >=2.0.0,<3
 
 test:
   commands:
diff --git a/recipes/riassigner/meta.yaml b/recipes/riassigner/meta.yaml
index ee61afd653b1c..deaa6d07bf1c6 100644
--- a/recipes/riassigner/meta.yaml
+++ b/recipes/riassigner/meta.yaml
@@ -1,32 +1,35 @@
-{% set version = "0.3.4" %}
+{% set name = "riassigner" %}
+{% set version = "0.4.1" %}
 
 package:
-  name: riassigner
-  version: "{{ version }}"
+  name: {{ name }}
+  version: {{ version }}
 
 source:
-  url: "https://github.com/RECETOX/RIAssigner/archive/refs/tags/v{{ version }}.tar.gz"
-  sha256: 7a8977603e659b76e87a558add2ae7960eb7e352365c289a7a193d4d8f68da3a
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/riassigner-{{ version }}.tar.gz
+  sha256: 316bc4399f0de586a8ba31e3d38b834307277bf84b7dcc2b51dfe2cead807299
 
 build:
   noarch: python
-  preserve_egg_dir: True
-  number: 4
-  script: {{ PYTHON }} -m pip install --no-deps --ignore-installed . -vv
+  number: 0
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation . -vvv
+  run_exports:
+    - {{ pin_subpackage('riassigner', max_pin="x.x") }}
 
 requirements:
   host:
-    - python >=3.7,<3.9
+    - python >=3.10,<3.13
     - pip
-    - pytest-runner
-    - setuptools
+    - poetry-core
   run:
-    - numpy <=1.23
-    - matchms >=0.14.0,<0.18.0
-    - pint >=0.17,<0.20
+    - numpy
+    - matchms >=0.24.1,<0.25.0
+    - pint >=0.23.0,<0.24.0
     - pandas
-    - python >=3.7,<3.9
+    - python >=3.10,<3.13
     - scipy
+    - urllib3 1.26.15
+    - fastparquet >=2023.10.1,<2024.0.0
 
 test:
   imports:
@@ -35,6 +38,7 @@ test:
 about:
   home: https://github.com/RECETOX/RIAssigner
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary: 'GC-MS retention index calculation'
   description: |
diff --git a/recipes/riblast/meta.yaml b/recipes/riblast/meta.yaml
new file mode 100644
index 0000000000000..1ccc6a07472fd
--- /dev/null
+++ b/recipes/riblast/meta.yaml
@@ -0,0 +1,41 @@
+{% set version = "1.2.0" %}
+
+package:
+  name: riblast
+  version: {{ version }}
+
+source:
+  url: https://github.com/balajtimate/RIblast/archive/refs/tags/v1.2.0.tar.gz
+  sha256: b77ae9cfd131e9ced512749b10349b00c13bd6bf32e0f85500ad5b9ea29c3d5a
+
+build:
+  number: 0
+  binary_relocation: true
+  script:
+    - cmake -H. -Bbuild_conda -G "${CMAKE_GENERATOR}" -DCMAKE_INSTALL_PREFIX=${PREFIX}
+    - cmake --build build_conda --target install
+  run_exports:
+    - {{ pin_subpackage('riblast') }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('cxx') }}
+    - libtool
+    - automake
+    - cmake
+    - m4
+  host:
+    - zlib
+  run:
+    - zlib
+
+test:
+  commands:
+    - RIblast 2>&1 | grep Options
+
+about:
+  home: https://github.com/fukunagatsu/RIblast
+  license: MIT License
+  license_file: LICENSE
+  summary: RIblast is ultrafast RNA-RNA interaction prediction software.
diff --git a/recipes/ribodetector/meta.yaml b/recipes/ribodetector/meta.yaml
index 1121acb70e5a7..98111d9b655b4 100644
--- a/recipes/ribodetector/meta.yaml
+++ b/recipes/ribodetector/meta.yaml
@@ -1,24 +1,29 @@
-{% set version = "0.2.7" %}
+{% set version = "0.3.1" %}
 
 package:
   name: ribodetector
   version: {{ version }}
 
 source:
-  url: https://files.pythonhosted.org/packages/d8/66/f1f7445866fe5a80058eace33a4d1888ab9531cf42b08ce9a764c993902a/ribodetector-0.2.7.tar.gz
-  sha256: 39633b2642eb961f61a827f7733acfe0de95e43a66749c6c46ddecd910e602d2
+  url: https://files.pythonhosted.org/packages/7a/83/da07dc151cea39c3f6edb55ac41581f5d6eb248464ac8fcdedc70b52cf5f/ribodetector-0.3.1.tar.gz
+  sha256: a520a411879a193f813ba5f7ad530e57aed31c0519c622de47490bb5144f0595
 
 build:
   number: 0
   noarch: python
-  script: "{{ PYTHON }} -m pip install . --no-deps -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  entry_points:
+    - ribodetector = ribodetector.detect:main
+    - ribodetector_cpu = ribodetector.detect_cpu:main
+  run_exports:
+    - {{ pin_subpackage('ribodetector', max_pin="x.x") }}
 
 requirements:
   host:
     - pip
-    - python >=3.8
+    - python >=3.8,<=3.10
   run:
-    - python >=3.8
+    - python >=3.8,<=3.10
     - pandas
     - numpy
     - tqdm
@@ -34,9 +39,11 @@ test:
     - ribodetector_cpu --help
 
 about:
-  home: https://github.com/hzi-bifo/RiboDetector 
-  license: GPL-3
-  summary: Accurate and rapid RiboRNA sequences Detector based on deep learning  
+  home: https://github.com/hzi-bifo/RiboDetector
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE
+  summary: Accurate and rapid RiboRNA sequences Detector based on deep learning
 
 extra:
   recipe-maintainers:
diff --git a/recipes/ribotin/build.sh b/recipes/ribotin/build.sh
index f8a7b9acf6352..19adc930d88f8 100644
--- a/recipes/ribotin/build.sh
+++ b/recipes/ribotin/build.sh
@@ -4,7 +4,11 @@ cd $SRC_DIR
 make all
 cp bin/ribotin-ref $PREFIX/bin
 cp bin/ribotin-verkko $PREFIX/bin
+cp bin/ribotin-hifiasm $PREFIX/bin
 
 mkdir -p $PREFIX/share/${PKG_NAME}-${PKG_VERSION}
 cp template_seqs/rDNA_one_unit.fasta $PREFIX/share/${PKG_NAME}-${PKG_VERSION}/rDNA_one_unit.fasta
+cp template_seqs/rDNA_one_unit.fasta.fai $PREFIX/share/${PKG_NAME}-${PKG_VERSION}/rDNA_one_unit.fasta.fai
 cp template_seqs/chm13_rDNAs.fa $PREFIX/share/${PKG_NAME}-${PKG_VERSION}/chm13_rDNAs.fa
+cp template_seqs/rDNA_annotation.gff3 $PREFIX/share/${PKG_NAME}-${PKG_VERSION}/rDNA_annotation.gff3
+cp template_seqs/rDNA_annotation.gff3_db $PREFIX/share/${PKG_NAME}-${PKG_VERSION}/rDNA_annotation.gff3_db
diff --git a/recipes/ribotin/makefile.patch b/recipes/ribotin/makefile.patch
index c01ea1f0fbf7d..8f9192ef79578 100644
--- a/recipes/ribotin/makefile.patch
+++ b/recipes/ribotin/makefile.patch
@@ -1,5 +1,5 @@
 diff --git a/makefile b/makefile
-index 40a23f7..b35510c 100644
+index 5166dd0..83ff306 100644
 --- a/makefile
 +++ b/makefile
 @@ -15,8 +15,8 @@ OBJ = $(patsubst %, $(ODIR)/%, $(_OBJ))
@@ -13,11 +13,15 @@ index 40a23f7..b35510c 100644
  
  $(shell mkdir -p bin)
  $(shell mkdir -p obj)
-@@ -30,10 +30,10 @@ $(BINDIR)/ribotin-ref: $(OBJ) $(ODIR)/ribotin-ref.o
+@@ -33,13 +33,13 @@ $(BINDIR)/ribotin-ref: $(OBJ) $(ODIR)/ribotin-ref.o
  	$(GPP) -o $@ $^ $(LINKFLAGS)
  
  $(ODIR)/ribotin-verkko.o: $(SRCDIR)/ribotin-verkko.cpp $(DEPS) $(OBJ)
 -	$(GPP) -c -o $@ $< $(CPPFLAGS) -DVERSION="\"$(VERSION)\"" -DRIBOTIN_TEMPLATE_PATH="\"$(TEMPLATEPATH)\""
++	$(GPP) -c -o $@ $< $(CPPFLAGS) -DVERSION="\"$(VERSION)\"" -DRIBOTIN_TEMPLATE_PATH="$(TEMPLATEPATH)"
+ 
+ $(ODIR)/ribotin-hifiasm.o: $(SRCDIR)/ribotin-hifiasm.cpp $(DEPS) $(OBJ)
+-	$(GPP) -c -o $@ $< $(CPPFLAGS) -DVERSION="\"$(VERSION)\"" -DRIBOTIN_TEMPLATE_PATH="\"$(TEMPLATEPATH)\""
 +	$(GPP) -c -o $@ $< $(CPPFLAGS) -DVERSION="\"$(VERSION)\"" -DRIBOTIN_TEMPLATE_PATH="$(TEMPLATEPATH)"
  
  $(ODIR)/ribotin-ref.o: $(SRCDIR)/ribotin-ref.cpp $(DEPS) $(OBJ)
diff --git a/recipes/ribotin/meta.yaml b/recipes/ribotin/meta.yaml
index ea924a17596ba..1acdf0e771f91 100644
--- a/recipes/ribotin/meta.yaml
+++ b/recipes/ribotin/meta.yaml
@@ -1,19 +1,21 @@
 {% set name = "ribotin" %}
-{% set version = "1.0" %}
+{% set version = "1.3" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://github.com/maickrau/{{ name }}/files/12180322/{{ name }}.tar.gz
-  sha256: 4ebe343e3cc2ef02195cb2ff2449d85cf2d3398a32da7b2e0b9b0be8f3dea6a4
+  url: https://github.com/maickrau/{{ name }}/files/14571457/{{ name }}.tar.gz
+  sha256: 7eda750e4fd1064eedf3016f5a49d6b6994e336619fc3b5e4afe4655b2873b70
   patches:
     - makefile.patch
 
 build:
   number: 0
   skip: True # [osx]
+  run_exports:
+    - {{ pin_subpackage('ribotin', max_pin="x.x") }}
 
 requirements:
   build:
@@ -25,7 +27,7 @@ requirements:
   run:
     - graphaligner
     - mbg
-    - liftoff
+    - liftoff =1.6.3 # Use a specific version to make sure the annotation index files are compatible
 
 test:
   commands:
diff --git a/recipes/ribotish/LICENSE b/recipes/ribotish/LICENSE
new file mode 100644
index 0000000000000..9cecc1d4669ee
--- /dev/null
+++ b/recipes/ribotish/LICENSE
@@ -0,0 +1,674 @@
+                    GNU GENERAL PUBLIC LICENSE
+                       Version 3, 29 June 2007
+
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+License would be to refrain entirely from conveying the Program.
+
+  13. Use with the GNU Affero General Public License.
+
+  Notwithstanding any other provision of this License, you have
+permission to link or combine any covered work with a work licensed
+under version 3 of the GNU Affero General Public License into a single
+combined work, and to convey the resulting work.  The terms of this
+License will continue to apply to the part which is the covered work,
+but the special requirements of the GNU Affero General Public License,
+section 13, concerning interaction through a network will apply to the
+combination as such.
+
+  14. Revised Versions of this License.
+
+  The Free Software Foundation may publish revised and/or new versions of
+the GNU General Public License from time to time.  Such new versions will
+be similar in spirit to the present version, but may differ in detail to
+address new problems or concerns.
+
+  Each version is given a distinguishing version number.  If the
+Program specifies that a certain numbered version of the GNU General
+Public License "or any later version" applies to it, you have the
+option of following the terms and conditions either of that numbered
+version or of any later version published by the Free Software
+Foundation.  If the Program does not specify a version number of the
+GNU General Public License, you may choose any version ever published
+by the Free Software Foundation.
+
+  If the Program specifies that a proxy can decide which future
+versions of the GNU General Public License can be used, that proxy's
+public statement of acceptance of a version permanently authorizes you
+to choose that version for the Program.
+
+  Later license versions may give you additional or different
+permissions.  However, no additional obligations are imposed on any
+author or copyright holder as a result of your choosing to follow a
+later version.
+
+  15. Disclaimer of Warranty.
+
+  THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
+APPLICABLE LAW.  EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
+HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY
+OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO,
+THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
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+  16. Limitation of Liability.
+
+  IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
+WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
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+EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
+SUCH DAMAGES.
+
+  17. Interpretation of Sections 15 and 16.
+
+  If the disclaimer of warranty and limitation of liability provided
+above cannot be given local legal effect according to their terms,
+reviewing courts shall apply local law that most closely approximates
+an absolute waiver of all civil liability in connection with the
+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
+                     END OF TERMS AND CONDITIONS
+
+            How to Apply These Terms to Your New Programs
+
+  If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
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+to attach them to the start of each source file to most effectively
+state the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+    {one line to give the program's name and a brief idea of what it does.}
+    Copyright (C) {year}  {name of author}
+
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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+    along with this program.  If not, see <http://www.gnu.org/licenses/>.
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+    {project}  Copyright (C) {year}  {fullname}
+    This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+    This is free software, and you are welcome to redistribute it
+    under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License.  Of course, your program's commands
+might be different; for a GUI interface, you would use an "about box".
+
+  You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+<http://www.gnu.org/licenses/>.
+
+  The GNU General Public License does not permit incorporating your program
+into proprietary programs.  If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library.  If this is what you want to do, use the GNU Lesser General
+Public License instead of this License.  But first, please read
+<http://www.gnu.org/philosophy/why-not-lgpl.html>.
diff --git a/recipes/ribotish/meta.yaml b/recipes/ribotish/meta.yaml
index ea8568ac1ccf4..f4c48b8dfd947 100644
--- a/recipes/ribotish/meta.yaml
+++ b/recipes/ribotish/meta.yaml
@@ -1,37 +1,43 @@
 {% set name = "ribotish" %}
-{% set version = "0.2.5" %}
-{% set sha256 = "f52ab6629240c1807b3d72c0a75e3b56525a490caf3012db417d0ad5f281cf1e" %}
+{% set version = "0.2.7" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://github.com/zhpn1024/ribotish/archive/v{{ version }}.tar.gz
-  sha256: {{ sha256 }}
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/ribotish-{{ version }}.tar.gz
+  sha256: 60ff55f0e7d32211b6c2cc473e427505c40d0000e310dd8e27569533d3d5c8e3
 
 build:
-  script: python -m pip install --no-deps --ignore-installed .
-  number: 1
+  number: 0
   noarch: python
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  run_exports:
+    - {{ pin_subpackage('ribotish', max_pin="x") }}
 
 requirements:
   host:
-    - python
+    - python >=3
     - pip
   run:
-    - python
+    - python >=3
     - numpy
-    - scipy
-    - pysam
-    - matplotlib-base
+    - pysam >=0.8.3
+    - matplotlib-base >=1.4.3
+    - scipy >=0.15.1
 
 test:
-  commands:
-    - ribotish -h
+  imports:
+    - ribotish
 
 about:
   home: https://github.com/zhpn1024/ribotish
-  license: GPL-3
-  license_file: LICENSE
   summary: Ribo TIS Hunter (Ribo-TISH) identifies translation activities using ribosome profiling data.
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE
+
+extra:
+  identifiers:
+    - doi:10.1038/s41467-017-01981-8
diff --git a/recipes/ribotools/meta.yaml b/recipes/ribotools/meta.yaml
new file mode 100644
index 0000000000000..c1f71e3bceeb1
--- /dev/null
+++ b/recipes/ribotools/meta.yaml
@@ -0,0 +1,73 @@
+{% set name = "ribotools" %}
+{% set version = "1.0.4" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/ribotools-{{ version }}.tar.gz
+  sha256: b40767cc80894566708025d5223c2c0dff475ef7d9a4332dc852b4c04388fea4
+
+build:
+  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vvv"
+  noarch: python
+  number: 0
+  entry_points:
+    - get-all-bam-periodic = ribotools.pgrms.get_all_bam_periodic:main
+    - get-gtf-from-predictions = ribotools.pgrms.get_gtf_from_predictions:main
+    - run-htseq-workflow = ribotools.htseq_wf.run_htseq_workflow:main
+    - alignment-workflow = ribotools.htseq_wf.alignment_workflow:main
+    - get-ribo-periodic = ribotools.htseq_wf.get_ribo_periodic:main
+    - keep-ribo-periodic = ribotools.htseq_wf.keep_ribo_periodic:main
+    - call-htseq-count = ribotools.htseq_wf.call_htseq_count:main
+    - get-sample-table = ribotools.scripts.__main__:get_sample_table
+    - run-tea = ribotools.scripts.__main__:run_tea
+    - run-dea = ribotools.scripts.__main__:run_dea
+  run_exports:
+    - {{ pin_subpackage('ribotools', max_pin='x') }}
+
+requirements:
+  host:
+    - python >=3.7,<3.11
+    - pip
+  run:
+    - python >=3.7,<3.11
+    - rpbp >=3.0.1
+    - htseq >=2.0.2
+    - r-base >=4.2.3
+    - r-r.utils
+    - r-devtools
+    - r-tidyverse
+    - r-openxlsx
+    - r-yaml
+    - r-ashr
+    - bioconductor-ihw
+    - bioconductor-apeglm
+    - bioconductor-deseq2
+
+test:
+  imports:
+    - ribotools
+    - ribotools.utils
+    - ribotools.htseq_wf
+    - ribotools.pgrms
+  commands:
+    - get-all-bam-periodic --help
+    - get-gtf-from-predictions --help
+    - run-htseq-workflow --help
+    - alignment-workflow --help
+    - get-ribo-periodic --help
+    - keep-ribo-periodic --help
+    - call-htseq-count --help
+
+about:
+  home: https://github.com/eboileau/ribotools
+  summary: Ribo-seq analysis tools associated with the Rp-Bp package and more
+  doc_url: https://ribotools.readthedocs.io/en/latest/
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - eboileau
diff --git a/recipes/ribotricer/meta.yaml b/recipes/ribotricer/meta.yaml
index 5c4100c7a633f..d3195bd2c29fe 100644
--- a/recipes/ribotricer/meta.yaml
+++ b/recipes/ribotricer/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "ribotricer" %}
-{% set version = "1.3.3" %}
+{% set version = "1.4.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 0724fd0acea601a15078e8e3b51e2df5f6b735c276dd978b139619a159f51f75
+  sha256: f0f612796f65460f58639cafe297afb1350d6fe7f50d06ea38f372447bdbc63b
 
 build:
   number: 0
@@ -15,6 +15,9 @@ build:
   entry_points:
     - ribotricer=ribotricer.cli:cli
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  run_exports:
+    - {{ pin_subpackage('ribotricer', max_pin="x.x") }}
+
 
 requirements:
   host:
diff --git a/recipes/ribowaltz/meta.yaml b/recipes/ribowaltz/meta.yaml
index 1d3b50dd02917..1725593a487e9 100755
--- a/recipes/ribowaltz/meta.yaml
+++ b/recipes/ribowaltz/meta.yaml
@@ -1,21 +1,23 @@
 {% set name = "riboWaltz" %}
-{% set version = "1.2.0" %}
-{% set sha256 = "1a915eccd23fd122eca470320b8f17762687350fdeb642aef01fb7990e98938b" %}
+{% set version = "2.0" %}
+{% set sha256 = "55f2f4e44709f1b41f788351b64cce4615194062775f5e0dc714320e01d6f65c" %}
 
 package:
-    name: {{ name|lower }}
-    version: {{ version }}
+  name: {{ name|lower }}
+  version: {{ version }}
 
 source:
-    url: https://github.com/LabTranslationalArchitectomics/{{ name }}/archive/v{{ version }}.tar.gz
-    sha256: {{ sha256 }}
+  url: https://github.com/LabTranslationalArchitectomics/{{ name }}/archive/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
 
 build:
-  number: 1
+  number: 0
   noarch: generic
   rpaths:
     - lib/R/lib/
     - lib/
+  run_exports:
+    - {{ pin_subpackage('ribowaltz', max_pin="x") }}
 
 requirements:
     host:
@@ -47,5 +49,6 @@ test:
 about:
     home: https://github.com/LabTranslationalArchitectomics/riboWaltz
     license: MIT
+    license_family: MIT
     license_file: LICENSE
     summary: Calculation of optimal P-site offsets, diagnostic analysis and visual inspection of ribosome profiling data.
diff --git a/recipes/rich-msa/meta.yaml b/recipes/rich-msa/meta.yaml
new file mode 100644
index 0000000000000..044a9fb346da1
--- /dev/null
+++ b/recipes/rich-msa/meta.yaml
@@ -0,0 +1,36 @@
+{% set name = "rich-msa" %}
+{% set version = "0.1.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/rich-msa-{{ version }}.tar.gz
+  sha256: 1fd78e16ab4e496f365512eb84a85c3352844e5972ef22d1bf682632482bd664
+
+build:
+  number: 0
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+  script: {{ PYTHON }} -m pip install . -vv
+
+requirements:
+  host:
+    - python >=3.6
+    - setuptools >=46.4
+    - pip
+  run:
+    - python >=3.6
+    - rich
+
+test:
+  imports:
+    - rich_msa
+
+about:
+  home: https://github.com/althonos/rich-msa
+  summary: A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
+  license: MIT
+  license_file: COPYING
diff --git a/recipes/ripcal/LICENSE b/recipes/ripcal/LICENSE
new file mode 100644
index 0000000000000..f288702d2fa16
--- /dev/null
+++ b/recipes/ripcal/LICENSE
@@ -0,0 +1,674 @@
+                    GNU GENERAL PUBLIC LICENSE
+                       Version 3, 29 June 2007
+
+ Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/>
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+                            Preamble
+
+  The GNU General Public License is a free, copyleft license for
+software and other kinds of works.
+
+  The licenses for most software and other practical works are designed
+to take away your freedom to share and change the works.  By contrast,
+the GNU General Public License is intended to guarantee your freedom to
+share and change all versions of a program--to make sure it remains free
+software for all its users.  We, the Free Software Foundation, use the
+GNU General Public License for most of our software; it applies also to
+any other work released this way by its authors.  You can apply it to
+your programs, too.
+
+  When we speak of free software, we are referring to freedom, not
+price.  Our General Public Licenses are designed to make sure that you
+have the freedom to distribute copies of free software (and charge for
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+you modify it: responsibilities to respect the freedom of others.
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+  9. Acceptance Not Required for Having Copies.
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+  You are not required to accept this License in order to receive or
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+
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+  A "contributor" is a copyright holder who authorizes use under this
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+work thus licensed is called the contributor's "contributor version".
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+receiving the covered work authorizing them to use, propagate, modify
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+you grant is automatically extended to all recipients of the covered
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+
+  A patent license is "discriminatory" if it does not include within
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+conditioned on the non-exercise of one or more of the rights that are
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+or that patent license was granted, prior to 28 March 2007.
+
+  Nothing in this License shall be construed as excluding or limiting
+any implied license or other defenses to infringement that may
+otherwise be available to you under applicable patent law.
+
+  12. No Surrender of Others' Freedom.
+
+  If conditions are imposed on you (whether by court order, agreement or
+otherwise) that contradict the conditions of this License, they do not
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+to collect a royalty for further conveying from those to whom you convey
+the Program, the only way you could satisfy both those terms and this
+License would be to refrain entirely from conveying the Program.
+
+  13. Use with the GNU Affero General Public License.
+
+  Notwithstanding any other provision of this License, you have
+permission to link or combine any covered work with a work licensed
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+License will continue to apply to the part which is the covered work,
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+
+  14. Revised Versions of this License.
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+be similar in spirit to the present version, but may differ in detail to
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+
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+Foundation.  If the Program does not specify a version number of the
+GNU General Public License, you may choose any version ever published
+by the Free Software Foundation.
+
+  If the Program specifies that a proxy can decide which future
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+  15. Disclaimer of Warranty.
+
+  THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
+APPLICABLE LAW.  EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
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+SUCH DAMAGES.
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+  17. Interpretation of Sections 15 and 16.
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+  If the disclaimer of warranty and limitation of liability provided
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+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
+                     END OF TERMS AND CONDITIONS
+
+            How to Apply These Terms to Your New Programs
+
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+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
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+to attach them to the start of each source file to most effectively
+state the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+    <one line to give the program's name and a brief idea of what it does.>
+    Copyright (C) <year>  <name of author>
+
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+Also add information on how to contact you by electronic and paper mail.
+
+  If the program does terminal interaction, make it output a short
+notice like this when it starts in an interactive mode:
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+    <program>  Copyright (C) <year>  <name of author>
+    This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+    This is free software, and you are welcome to redistribute it
+    under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License.  Of course, your program's commands
+might be different; for a GUI interface, you would use an "about box".
+
+  You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+<https://www.gnu.org/licenses/>.
+
+  The GNU General Public License does not permit incorporating your program
+into proprietary programs.  If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library.  If this is what you want to do, use the GNU Lesser General
+Public License instead of this License.  But first, please read
+<https://www.gnu.org/licenses/why-not-lgpl.html>.
diff --git a/recipes/ripcal/build.sh b/recipes/ripcal/build.sh
new file mode 100644
index 0000000000000..b1d42ef3349f2
--- /dev/null
+++ b/recipes/ripcal/build.sh
@@ -0,0 +1,26 @@
+#!/bin/bash
+
+export LANGUAGE=en_US.UTF-8
+export LC_ALL=en_US.UTF-8
+
+# Creating necessary directories
+mkdir -p "${PREFIX}/bin"
+
+# Copying executable files to bin directory
+cp "${SRC_DIR}/perl/"* "${PREFIX}/bin/"
+
+# Fixing permissions
+chmod +x "${PREFIX}/bin/deripcal"
+chmod +x "${PREFIX}/bin/ripcal"
+chmod +x "${PREFIX}/bin/ripcal_summarise"
+
+sed -i "s:/usr/bin/perl:/usr/bin/env perl:" "${PREFIX}/bin/ripcal"
+sed -i "s/use Bio::Perl;/use BioPerl;/" "${PREFIX}/bin/ripcal"
+
+sed -i "s:/usr/bin/perl:/usr/bin/env perl:" "${PREFIX}/bin/deripcal"
+sed -i "s:/usr/bin/perl:/usr/bin/env perl:" "${PREFIX}/bin/ripcal_summarise"
+
+export "PERL5LIB=${PREFIX}/lib/perl5/site_perl/5.32.1/:${PERL5LIB}"
+
+sed -i.bak '/^use Tk/ s/^/# /' "${PREFIX}/bin/ripcal"
+
diff --git a/recipes/ripcal/meta.yaml b/recipes/ripcal/meta.yaml
new file mode 100644
index 0000000000000..47583a3f8627d
--- /dev/null
+++ b/recipes/ripcal/meta.yaml
@@ -0,0 +1,45 @@
+{% set name = "ripcal" %}
+{% set version = "2.0" %}
+{% set sha256 = "6f18af1c6fedde17430e023e3a5c1ab56f14910694d83ba90ee738d8d48188bd" %}
+
+package:
+  name: '{{ name }}'
+  version: '{{ version }}'
+
+source:
+  url: "https://sourceforge.net/projects/ripcal/files/RIPCAL/RIPCAL_{{ version }}/{{ name }}2_install.zip"
+  sha256: '{{ sha256 }}'
+
+build:
+  number: 0
+  noarch: generic
+  run_exports:
+   - {{ pin_subpackage('ripcal', max_pin="x") }}
+
+requirements:
+  run:
+    - perl >=5.32.1
+    - perl-math-round
+    - perl-bioperl >=1.7.2
+    - perl-bioperl-core >=1.7.2
+    - perl-getopt-long
+    - perl-mime-base64
+    - perl-gd
+
+test:
+  commands:
+    - 'ripcal --help'
+    - 'deripcal --help'
+
+about:
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE
+  summary: 'RIPCAL is used for the bioinformatic analysis of repeat-induced point mutation (RIP) in fungal genome sequences'
+  home: https://sourceforge.net/projects/ripcal
+
+extra:
+  identifiers:
+    - https://doi.org/10.1186/1471-2105-9-478
+  recipe-maintainers:
+    - KristinaGagalova
diff --git a/recipes/rmath4/meta.yaml b/recipes/rmath4/meta.yaml
new file mode 100644
index 0000000000000..4a32e38ee15a5
--- /dev/null
+++ b/recipes/rmath4/meta.yaml
@@ -0,0 +1,46 @@
+{% set name = "rmath4" %}
+{% set version = "4.3.1" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/Rmath4-{{ version }}.tar.gz
+  sha256: c39a75e1c883fd6f5d6b6677213b4e0704ce014f060d0d00b89f5ff608b72300
+
+build:
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+  host:
+    - python
+    - setuptools
+    - wheel
+    - pip
+  run:
+    - python
+
+test:
+  imports:
+    - Rmath4
+  commands:
+    - pip check
+    - python -c "import Rmath4; assert 0<=Rmath4.unif_rand()<1"
+  requires:
+    - pip
+
+about:
+  home: https://github.com/alex-wave/Rmath-python
+  summary: standalone Rmath library from R
+  license: GPL-2.0
+  license_file: COPYING
+
+extra:
+  recipe-maintainers:
+    - alpae
diff --git a/recipes/rmats/build.sh b/recipes/rmats/build.sh
index 7d66e49fab05b..95408039e33d0 100644
--- a/recipes/rmats/build.sh
+++ b/recipes/rmats/build.sh
@@ -6,6 +6,7 @@ GSL_LDFLAGS="$(gsl-config --libs)"
 GSL_CFLAGS="$(gsl-config --cflags)"
 export GSL_LDFLAGS
 export GSL_CFLAGS
+export LD_LIBRARY_PATH=${PREFIX}/lib
 
 make
 
diff --git a/recipes/rmats/build_failure.osx-64.yaml b/recipes/rmats/build_failure.osx-64.yaml
deleted file mode 100644
index 1837edf6c6301..0000000000000
--- a/recipes/rmats/build_failure.osx-64.yaml
+++ /dev/null
@@ -1,104 +0,0 @@
-recipe_sha: bce4578c2ff87e46fffb99dfaa0533e17c948dde09a54ae99f00df2ca77f1139  # The commit at which this recipe failed to build.
-skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
-log: |-
-  In file included from /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/toolkit/bamtools_merge.cpp:12:
-  In file included from /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/api/BamMultiReader.h:14:
-  In file included from /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/api/BamReader.h:14:
-  In file included from /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/api/BamAlignment.h:15:
-  /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
-  const char GZIP_ID2   = 139;
-             ~~~~~~~~     ^~~
-  /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
-  const char OS_UNKNOWN = 255;
-             ~~~~~~~~~~   ^~~
-  In file included from /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/toolkit/bamtools_merge.cpp:12:
-  In file included from /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/api/BamMultiReader.h:14:
-  In file included from /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/api/BamReader.h:14:
-  /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/api/BamAlignment.h:581:9: warning: variable 'elementLength' set but not used [-Wunused-but-set-variable]
-      int elementLength = 0;
-          ^
-  3 warnings generated.
-  [ 93%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o
-  In file included from /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/toolkit/bamtools_random.cpp:12:
-  In file included from /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/api/BamMultiReader.h:14:
-  In file included from /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/api/BamReader.h:14:
-  In file included from /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/api/BamAlignment.h:15:
-  /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
-  const char GZIP_ID2   = 139;
-             ~~~~~~~~     ^~~
-  /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
-  const char OS_UNKNOWN = 255;
-             ~~~~~~~~~~   ^~~
-  In file included from /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/toolkit/bamtools_random.cpp:12:
-  In file included from /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/api/BamMultiReader.h:14:
-  In file included from /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/api/BamReader.h:14:
-  /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/api/BamAlignment.h:581:9: warning: variable 'elementLength' set but not used [-Wunused-but-set-variable]
-      int elementLength = 0;
-          ^
-  3 warnings generated.
-  [ 94%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o
-  In file included from /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/toolkit/bamtools_resolve.cpp:12:
-  In file included from /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/api/BamReader.h:14:
-  In file included from /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/api/BamAlignment.h:15:
-  /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
-  const char GZIP_ID2   = 139;
-             ~~~~~~~~     ^~~
-  /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
-  const char OS_UNKNOWN = 255;
-             ~~~~~~~~~~   ^~~
-  In file included from /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/toolkit/bamtools_resolve.cpp:12:
-  In file included from /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/api/BamReader.h:14:
-  /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/api/BamAlignment.h:581:9: warning: variable 'elementLength' set but not used [-Wunused-but-set-variable]
-      int elementLength = 0;
-          ^
-  /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/toolkit/bamtools_resolve.cpp:413:36: error: no matching function for call to 'make_pair'
-          resolver.ReadNames.insert( make_pair<string,bool>(fields[1], true) ) ;
-                                     ^~~~~~~~~~~~~~~~~~~~~~
-  /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/_build_env/bin/../include/c/v1/__utility/pair.h:542:1: note: candidate function template not viable: expects an rvalue for 1st argument
-  make_pair(_T1&& __t1, _T2&& __t2)
-  ^
-  /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/toolkit/bamtools_resolve.cpp:610:24: error: no matching function for call to 'make_pair'
-      readGroups.insert( make_pair<string, ReadGroupResolver>(name, resolver) );
-                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/_build_env/bin/../include/c/v1/__utility/pair.h:542:1: note: candidate function template not viable: 1st argument ('const std::string' (aka 'const basic_string<char>')) would lose const qualifier
-  make_pair(_T1&& __t1, _T2&& __t2)
-  ^
-  /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/toolkit/bamtools_resolve.cpp:1017:41: error: no matching function for call to 'make_pair'
-          else resolver.ReadNames.insert( make_pair<string, bool>(al.Name, isCurrentMateUnique) );
-                                          ^~~~~~~~~~~~~~~~~~~~~~~
-  /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/_build_env/bin/../include/c/v1/__utility/pair.h:542:1: note: candidate function template not viable: expects an rvalue for 1st argument
-  make_pair(_T1&& __t1, _T2&& __t2)
-  ^
-  /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/bamtools/src/toolkit/bamtools_resolve.cpp:1049:30: error: no matching function for call to 'make_pair'
-          m_readGroups.insert( make_pair<string, ReadGroupResolver>(rg.ID, ReadGroupResolver()) );
-                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  /opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/_build_env/bin/../include/c/v1/__utility/pair.h:542:1: note: candidate function template not viable: 1st argument ('const std::string' (aka 'const basic_string<char>')) would lose const qualifier
-  make_pair(_T1&& __t1, _T2&& __t2)
-  ^
-  3 warnings and 4 errors generated.
-  make[3]: *** [src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make:188: src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o] Error 1
-  make[2]: *** [CMakeFiles/Makefile2:452: src/toolkit/CMakeFiles/bamtools_cmd.dir/all] Error 2
-  make[3]: Leaving directory '$SRC_DIR/bamtools/build'
-  make[2]: Leaving directory '$SRC_DIR/bamtools/build'
-  make[1]: Leaving directory '$SRC_DIR/bamtools/build'
-  make[1]: *** [Makefile:136: all] Error 2
-  make: *** [Makefile:3: build] Error 2
-  Traceback (most recent call last):
-    File "/opt/mambaforge/envs/bioconda/bin/conda-mambabuild", line 10, in <module>
-      sys.exit(main())
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
-      call_conda_build(action, config)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
-      result = api.build(
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
-      return build_tree(
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
-      packages_from_this = build(metadata, stats,
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
-      utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
-      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
-      raise subprocess.CalledProcessError(proc.returncode, _args)
-  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/mambaforge/envs/bioconda/conda-bld/rmats_1685395181419/work/conda_build.sh']' returned non-zero exit status 2.
-# Last 100 lines of the build log.
diff --git a/recipes/rmats/meta.yaml b/recipes/rmats/meta.yaml
index 84dcbf4381df5..7e19cc620dc0d 100644
--- a/recipes/rmats/meta.yaml
+++ b/recipes/rmats/meta.yaml
@@ -1,18 +1,18 @@
-{% set version = "4.1.2" %}
+{% set name = "rmats" %}
+{% set version = "4.3.0" %}
 
 package:
-  name: rmats
+  name: {{ name }}
   version: {{ version }}
 
 source:
-  sha256: 13c558b06a0dd89463c6975b4cc244a59ad69069c897e61dc57a1906a1d7a36a
+  sha256: c78e6411b7c6634cc31511b69d37a6a3da2e2e076e87609679818debd513aa7a
   url: https://github.com/Xinglab/rmats-turbo/releases/download/v{{ version }}/rmats_turbo_v{{ version|replace(".","_") }}.tar.gz
-  patches:
-    # remove patch when new version includes: https://github.com/Xinglab/rmats-turbo/pull/169
-    - rmats_c_myfunc.patch
 
 build:
-  number: 5
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   build:
diff --git a/recipes/rmats/rmats_c_myfunc.patch b/recipes/rmats/rmats_c_myfunc.patch
deleted file mode 100644
index 7c9c468f29c38..0000000000000
--- a/recipes/rmats/rmats_c_myfunc.patch
+++ /dev/null
@@ -1,10 +0,0 @@
---- rMATS_C/src/myfunc.c	2021-12-21 12:53:44.229207000 -0500
-+++ rMATS_C/src/myfunc.c	2021-12-21 12:53:44.229207000 -0500
-@@ -14,7 +14,6 @@
- 
- extern double rho;
- extern double cutoff;
--extern clock_t dur;
- 
- 
- #define ITER_CUTOFF 0.01
diff --git a/recipes/rmats2sashimiplot/meta.yaml b/recipes/rmats2sashimiplot/meta.yaml
index dddf30862ec4f..372775d61638b 100644
--- a/recipes/rmats2sashimiplot/meta.yaml
+++ b/recipes/rmats2sashimiplot/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "rmats2sashimiplot" %}
-{% set version = "2.0.4" %}
+{% set version = "3.0.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,14 +7,16 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 2bd76cc2e95a6b3dcd81e0ff212261cd2891d28e4ac314b5211489a6b426a9d3
+  sha256: 5d8e0fa3e7c5db2e595dc08e4cdb652385c18d7f2b70468d81a0fb3d957d03ce
 
 build:
-  number: 3
+  number: 0
   entry_points:
     - rmats2sashimiplot=rmats2sashimiplot.rmats2sashimiplot:main
     - index_gff=MISO.misopy.index_gff:main
     - sashimi_plot=MISO.misopy.sashimi_plot.sashimi_plot:main
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   host:
@@ -22,7 +24,7 @@ requirements:
     - python
   run:
     - bedtools
-    - matplotlib =3.3
+    - matplotlib-base
     - numpy
     - pysam
     - python
diff --git a/recipes/rmblast/build.sh b/recipes/rmblast/build.sh
index a083ce6503638..bfe97fab1d9a0 100755
--- a/recipes/rmblast/build.sh
+++ b/recipes/rmblast/build.sh
@@ -1,16 +1,14 @@
 #!/bin/bash
 set -euxo pipefail
 
-patch -p1 < ${RECIPE_DIR}/isb-2.14.0+-rmblast.patch
-
 cd ${SRC_DIR}/c++/
 
-export CPLUS_INCLUDE_PATH="${PREFIX}/include"
+export INCLUDE_PATH="${PREFIX}/include"
 export LIBRARY_PATH="${PREFIX}/lib"
-export LDFLAGS="-L${PREFIX}/lib"
+export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
 
-export CFLAGS="${CFLAGS} -Ofast"
-export CXXFLAGS="${CXXFLAGS} -Ofast"
+export CFLAGS="${CFLAGS} -O3"
+export CXXFLAGS="${CXXFLAGS} -O3"
 export CPPFLAGS="${CPPFLAGS} -I${PREFIX}/include"
 
 if test x"`uname`" = x"Linux"; then
@@ -26,7 +24,7 @@ else
     export CPP_FOR_BUILD=${CPP}
 fi
 
-export LIB_INSTALL_DIR=${PREFIX}/lib/ncbi-blast+
+export LIB_INSTALL_DIR="${PREFIX}/lib/ncbi-blast+"
 
 # with/without options:
 #
@@ -55,65 +53,38 @@ export LIB_INSTALL_DIR=${PREFIX}/lib/ncbi-blast+
 # Fixes building on Linux
 export AR="${AR} rcs"
 
-# not building with boost as it's only used for unit tests
-if [[ $(uname) = Linux ]]; then
-    ./configure \
-        CXX=${CXX} CXXFLAGS="${CXXFLAGS}" \
-        --prefix=${PREFIX} \
-        --without-boost \
-        --with-bin-release \
-        --with-mt \
-        --with-dll \
-        --with-openmp \
-        --without-autodep \
-        --without-makefile-auto-update \
-        --with-flat-makefile \
-        --without-caution \
-        --without-dbapi \
-        --without-lzo \
-        --with-hard-runpath \
-        --with-runpath=${LIB_INSTALL_DIR} \
-        --without-debug \
-        --with-experimental=Int8GI \
-        --without-openssl \
-        --with-strip \
-        --without-vdb \
-        --with-z=${PREFIX} \
-        --with-bz2=${PREFIX} \
-        --with-nettle=${PREFIX} \
-        --without-krb5 \
-        --without-gnutls \
-        --without-sse42 \
-        --without-gcrypt
+if [ `uname` == Linux ]; then
+  export CONFIG_ARGS="--with-openmp --with-hard-runpath --with-runpath=${LIB_INSTALL_DIR}"
 else
-    ./configure \
-        CXX=${CXX} CXXFLAGS="${CXXFLAGS}" \
-        --prefix=${PREFIX} \
-        --without-boost \
-        --with-bin-release \
-        --with-mt \
-        --without-openmp \
-        --without-autodep \
-        --without-makefile-auto-update \
-        --with-flat-makefile \
-        --without-caution \
-        --without-dbapi \
-        --without-lzo \
-        --with-runpath=${LIB_INSTALL_DIR} \
-        --without-debug \
-        --with-experimental=Int8GI \
-        --without-openssl \
-        --with-strip \
-        --without-vdb \
-        --with-z=${PREFIX} \
-        --with-bz2=${PREFIX} \
-        --with-nettle=${PREFIX} \
-        --without-krb5 \
-        --without-gnutls \
-        --without-sse42 \
-        --without-gcrypt
+  export CONFIG_ARGS="--without-openmp"
 fi
 
+# not building with boost as it's only used for unit tests
+./configure \
+    CXX="${CXX}" CXXFLAGS="${CXXFLAGS}" \
+    --prefix=${PREFIX} \
+    --with-64 \
+    --with-mt \
+    --without-dll \
+    --with-flat-makefile \
+    --without-caution \
+    --without-boost \
+    --without-lzo \
+    --without-zstd \
+    --without-debug \
+    --with-experimental=Int8GI \
+    --without-openssl \
+    --with-strip \
+    --without-vdb \
+    --with-z=${PREFIX} \
+    --with-bz2=${PREFIX} \
+    --without-krb5 \
+    --without-gnutls \
+    --without-sse42 \
+    --without-gcrypt \
+    --without-pcre \
+    ${CONFIG_ARGS}
+
 projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/"
 cd ReleaseMT
 
diff --git a/recipes/rmblast/isb-2.14.0+-rmblast.patch b/recipes/rmblast/isb-2.14.1+-rmblast.patch
similarity index 93%
rename from recipes/rmblast/isb-2.14.0+-rmblast.patch
rename to recipes/rmblast/isb-2.14.1+-rmblast.patch
index efc0ddc525832..89d516ae3d55f 100644
--- a/recipes/rmblast/isb-2.14.0+-rmblast.patch
+++ b/recipes/rmblast/isb-2.14.1+-rmblast.patch
@@ -1,5 +1,5 @@
---- ncbi-blast-2.13.0+-src-orig/c++/include/algo/blast/blastinput/rmblastn_args.hpp	2011-02-09 06:37:10.000000000 -0800
-+++ ncbi-blast-2.13.0+-src-new/c++/include/algo/blast/blastinput/rmblastn_args.hpp	2022-10-24 14:04:18.602811182 -0700
+--- a/c++/include/algo/blast/blastinput/rmblastn_args.hpp	2011-02-09 06:37:10.000000000 -0800
++++ b/c++/include/algo/blast/blastinput/rmblastn_args.hpp	2023-08-24 15:48:58.352822168 -0700
 @@ -32,13 +32,44 @@ public:
  
      virtual int GetQueryBatchSize() const;
@@ -45,9 +45,17 @@
  
  END_SCOPE(blast)
  END_NCBI_SCOPE
---- ncbi-blast-2.13.0+-src-orig/c++/src/algo/blast/blastinput/rmblastn_args.cpp	2016-05-04 07:59:01.000000000 -0700
-+++ ncbi-blast-2.13.0+-src-new/c++/src/algo/blast/blastinput/rmblastn_args.cpp	2022-10-24 14:04:18.603811174 -0700
-@@ -88,7 +88,7 @@ CRMBlastnAppArgs::CRMBlastnAppArgs()
+--- a/c++/src/algo/blast/blastinput/rmblastn_args.cpp	2016-05-04 07:59:01.000000000 -0700
++++ b/c++/src/algo/blast/blastinput/rmblastn_args.cpp	2023-08-24 15:48:58.352822168 -0700
+@@ -44,6 +44,7 @@ CRMBlastnAppArgs::CRMBlastnAppArgs()
+     m_Args.push_back(arg);
+ 
+     m_BlastDbArgs.Reset(new CBlastDatabaseArgs);
++    m_BlastDbArgs->SetDatabaseMaskingSupport(true);
+     arg.Reset(m_BlastDbArgs);
+     m_Args.push_back(arg);
+ 
+@@ -88,7 +89,7 @@ CRMBlastnAppArgs::CRMBlastnAppArgs()
      arg.Reset(m_FormattingArgs);
      m_Args.push_back(arg);
  
@@ -56,7 +64,7 @@
      arg.Reset(m_MTArgs);
      m_Args.push_back(arg);
  
-@@ -101,19 +101,62 @@ CRMBlastnAppArgs::CRMBlastnAppArgs()
+@@ -101,19 +102,62 @@ CRMBlastnAppArgs::CRMBlastnAppArgs()
      m_Args.push_back(arg);
  }
  
@@ -124,9 +132,9 @@
  }
  
  END_SCOPE(blast)
---- ncbi-blast-2.13.0+-src-orig/c++/src/algo/blast/format/blast_format.cpp	2022-01-24 05:33:46.000000000 -0800
-+++ ncbi-blast-2.13.0+-src-new/c++/src/algo/blast/format/blast_format.cpp	2022-10-24 14:04:18.603811174 -0700
-@@ -2498,18 +2498,6 @@ void CBlastFormat::LogBlastSearchInfo(CB
+--- a/c++/src/algo/blast/format/blast_format.cpp	2023-04-25 10:14:39.000000000 -0700
++++ b/c++/src/algo/blast/format/blast_format.cpp	2023-08-24 15:48:58.353822148 -0700
+@@ -2494,18 +2494,6 @@ void CBlastFormat::LogBlastSearchInfo(CB
  			}
  		}
  		else {
@@ -145,8 +153,8 @@
  			report.AddParam(CBlastUsageReport::eDBLength, GetDbTotalLength());
  			report.AddParam(CBlastUsageReport::eDBNumSeqs, num_seqs);
  			report.AddParam(CBlastUsageReport::eDBDate, m_DbInfo[0].date);
---- ncbi-blast-2.13.0+-src-orig/c++/src/algo/blast/core/blast_stat.c	2021-06-21 12:27:23.000000000 -0700
-+++ ncbi-blast-2.13.0+-src-new/c++/src/algo/blast/core/blast_stat.c	2022-10-24 14:04:18.604811166 -0700
+--- a/c++/src/algo/blast/core/blast_stat.c	2021-06-21 12:27:23.000000000 -0700
++++ b/c++/src/algo/blast/core/blast_stat.c	2023-08-24 15:48:58.354822127 -0700
 @@ -85,7 +85,6 @@ typedef struct MatrixInfo {
     Int4     max_number_values;   /**< number of values (e.g., BLOSUM90_VALUES_MAX). */
  } MatrixInfo;
@@ -339,9 +347,9 @@
  /** Read in the matrix from the FILE *fp.
   * This function ASSUMES that the matrices are in the ncbistdaa
   * @param sbp the BlastScoreBlk with the matrix to be populated [in|out]
---- ncbi-blast-2.13.0+-src-orig/c++/src/app/blast/blast_app_util.cpp	2021-08-31 06:26:07.000000000 -0700
-+++ ncbi-blast-2.13.0+-src-new/c++/src/app/blast/blast_app_util.cpp	2022-10-24 14:04:18.605811158 -0700
-@@ -951,12 +951,6 @@ void LogCmdOptions(blast::CBlastUsageRep
+--- a/c++/src/app/blast/blast_app_util.cpp	2023-05-02 06:55:28.000000000 -0700
++++ b/c++/src/app/blast/blast_app_util.cpp	2023-08-24 15:48:58.354822127 -0700
+@@ -957,12 +957,6 @@ void LogCmdOptions(blast::CBlastUsageRep
  		args.GetBlastDatabaseArgs()->GetSearchDatabase()->GetSeqDb().NotEmpty()) {
  
  		CRef<CSeqDB> db = args.GetBlastDatabaseArgs()->GetSearchDatabase()->GetSeqDb();
@@ -354,9 +362,9 @@
  		report.AddParam(CBlastUsageReport::eDBLength, (Int8) db->GetTotalLength());
  		report.AddParam(CBlastUsageReport::eDBNumSeqs, db->GetNumSeqs());
  		report.AddParam(CBlastUsageReport::eDBDate, db->GetDate());
---- ncbi-blast-2.13.0+-src-orig/c++/src/app/blastdb/blastdbcmd.cpp	2021-11-22 08:07:39.000000000 -0800
-+++ ncbi-blast-2.13.0+-src-new/c++/src/app/blastdb/blastdbcmd.cpp	2022-10-24 14:04:18.605811158 -0700
-@@ -1218,21 +1218,6 @@ void CBlastDBCmdApp::x_AddCmdOptions()
+--- a/c++/src/app/blastdb/blastdbcmd.cpp	2022-11-08 11:47:48.000000000 -0800
++++ b/c++/src/app/blastdb/blastdbcmd.cpp	2023-08-24 15:48:58.355822107 -0700
+@@ -1239,21 +1239,6 @@ void CBlastDBCmdApp::x_AddCmdOptions()
      	m_UsageReport.AddParam(CBlastUsageReport::eOutputFmt, args["outfmt"].AsString());
      }
  
@@ -378,8 +386,8 @@
  	m_UsageReport.AddParam(CBlastUsageReport::eDBLength, (Int8) m_BlastDb->GetTotalLength());
  	m_UsageReport.AddParam(CBlastUsageReport::eDBNumSeqs, m_BlastDb->GetNumSeqs());
  	m_UsageReport.AddParam(CBlastUsageReport::eDBDate, m_BlastDb->GetDate());
---- ncbi-blast-2.13.0+-src-orig/c++/src/app/rmblastn/CMakeLists.rmblastn.app.txt	1969-12-31 16:00:00.000000000 -0800
-+++ ncbi-blast-2.13.0+-src-new/c++/src/app/rmblastn/CMakeLists.rmblastn.app.txt	2022-10-24 14:04:18.606811150 -0700
+--- a/c++/src/app/rmblastn/CMakeLists.rmblastn.app.txt	1969-12-31 16:00:00.000000000 -0800
++++ b/c++/src/app/rmblastn/CMakeLists.rmblastn.app.txt	2023-08-24 15:48:58.355822107 -0700
 @@ -0,0 +1,10 @@
 +# Derived from CMakeLists.blastn.app.txt 626054 2021-02-23 17:13:18Z fongah2
 +
@@ -391,8 +399,8 @@
 +  NCBI_project_tags(gbench)
 +NCBI_end_app()
 +
---- ncbi-blast-2.13.0+-src-orig/c++/src/app/rmblastn/Makefile.in	1969-12-31 16:00:00.000000000 -0800
-+++ ncbi-blast-2.13.0+-src-new/c++/src/app/rmblastn/Makefile.in	2022-10-24 14:04:18.606811150 -0700
+--- a/c++/src/app/rmblastn/Makefile.in	1969-12-31 16:00:00.000000000 -0800
++++ b/c++/src/app/rmblastn/Makefile.in	2023-08-24 15:48:58.355822107 -0700
 @@ -0,0 +1,13 @@
 +# Meta-makefile("APP" project)
 +#################################
@@ -407,8 +415,8 @@
 +
 +rmblastn: lib
 +	${MAKE} ${MFLAGS} -f Makefile.rmblastn_app
---- ncbi-blast-2.13.0+-src-orig/c++/src/app/rmblastn/Makefile.rmblastn.app	1969-12-31 16:00:00.000000000 -0800
-+++ ncbi-blast-2.13.0+-src-new/c++/src/app/rmblastn/Makefile.rmblastn.app	2022-10-24 14:04:18.606811150 -0700
+--- a/c++/src/app/rmblastn/Makefile.rmblastn.app	1969-12-31 16:00:00.000000000 -0800
++++ b/c++/src/app/rmblastn/Makefile.rmblastn.app	2023-08-24 15:48:58.356822087 -0700
 @@ -0,0 +1,17 @@
 +APP = rmblastn
 +SRC = rmblastn_node rmblastn_app
@@ -427,8 +435,8 @@
 +REQUIRES = objects -Cygwin
 +
 +PROJ_TAG = gbench
---- ncbi-blast-2.13.0+-src-orig/c++/src/app/rmblastn/rmblastn_app.cpp	1969-12-31 16:00:00.000000000 -0800
-+++ ncbi-blast-2.13.0+-src-new/c++/src/app/rmblastn/rmblastn_app.cpp	2022-11-01 12:09:16.152658892 -0700
+--- a/c++/src/app/rmblastn/rmblastn_app.cpp	1969-12-31 16:00:00.000000000 -0800
++++ b/c++/src/app/rmblastn/rmblastn_app.cpp	2023-08-24 15:48:58.356822087 -0700
 @@ -0,0 +1,394 @@
 +/*  $Id: blastn_app.cpp 634685 2021-07-16 13:42:53Z fongah2 $
 + * ===========================================================================
@@ -824,8 +832,8 @@
 +    return CBlastnApp().AppMain(argc, argv);
 +}
 +#endif /* SKIP_DOXYGEN_PROCESSING */
---- ncbi-blast-2.13.0+-src-orig/c++/src/app/rmblastn/rmblastn_node.cpp	1969-12-31 16:00:00.000000000 -0800
-+++ ncbi-blast-2.13.0+-src-new/c++/src/app/rmblastn/rmblastn_node.cpp	2022-10-24 14:04:18.607811142 -0700
+--- a/c++/src/app/rmblastn/rmblastn_node.cpp	1969-12-31 16:00:00.000000000 -0800
++++ b/c++/src/app/rmblastn/rmblastn_node.cpp	2023-08-24 15:48:58.356822087 -0700
 @@ -0,0 +1,245 @@
 +/*  $Id:
 + * ===========================================================================
@@ -1072,8 +1080,8 @@
 +    return NULL;
 +}
 +
---- ncbi-blast-2.13.0+-src-orig/c++/src/app/rmblastn/rmblastn_node.hpp	1969-12-31 16:00:00.000000000 -0800
-+++ ncbi-blast-2.13.0+-src-new/c++/src/app/rmblastn/rmblastn_node.hpp	2022-10-24 14:04:18.607811142 -0700
+--- a/c++/src/app/rmblastn/rmblastn_node.hpp	1969-12-31 16:00:00.000000000 -0800
++++ b/c++/src/app/rmblastn/rmblastn_node.hpp	2023-08-24 15:48:58.356822087 -0700
 @@ -0,0 +1,62 @@
 +/*  $Id:
 + * ===========================================================================
@@ -1137,8 +1145,8 @@
 +END_NCBI_SCOPE
 +
 +#endif /* APP__RMBLASTN_NODE__HPP */
---- ncbi-blast-2.13.0+-src-orig/c++/src/connect/ncbi_usage_report.cpp	2020-04-05 21:18:34.000000000 -0700
-+++ ncbi-blast-2.13.0+-src-new/c++/src/connect/ncbi_usage_report.cpp	2022-10-24 14:04:18.607811142 -0700
+--- a/c++/src/connect/ncbi_usage_report.cpp	2022-07-27 20:36:37.000000000 -0700
++++ b/c++/src/connect/ncbi_usage_report.cpp	2023-08-24 15:48:58.357822066 -0700
 @@ -46,7 +46,7 @@ BEGIN_NCBI_SCOPE
  //  All parameters can be redefined in the configuration file.
  
@@ -1148,21 +1156,24 @@
  
  // Usage logging is disabled by default.
  const bool  kDefault_IsEnabled = false;
-@@ -268,11 +268,7 @@ void CUsageReportJob::x_CopyFrom(const CUsageReportJob& other)
- #if defined(NCBI_USAGE_REPORT_SUPPORTED)
+@@ -269,10 +269,12 @@ void CUsageReportJob::x_CopyFrom(const C
  static string s_GetOS(void)
  {
--    // Check NCBI_OS first, configure can define OS name already
+     // Check NCBI_OS first, configure can define OS name already
 -#if   defined(NCBI_OS)
 -    return NCBI_OS;
--    // Fallback, try to guess
++// RMH: To support the building of macos arm64 binaries
++//#if   defined(NCBI_OS)
++//    return NCBI_OS;
+     // Fallback, try to guess
 -#elif defined(_WIN32)
++//#elif defined(_WIN32)
 +#if defined(_WIN32)
      return "MSWIN";         // Windows
  #elif defined(__CYGWIN__)
      return "CYGWIN";        // Windows (Cygwin POSIX under Microsoft Windows)
---- ncbi-blast-2.13.0+-src-orig/c++/src/objtools/align_format/showalign.cpp	2021-06-10 08:55:25.000000000 -0700
-+++ ncbi-blast-2.13.0+-src-new/c++/src/objtools/align_format/showalign.cpp	2022-10-24 14:04:18.608811134 -0700
+--- a/c++/src/objtools/align_format/showalign.cpp	2023-03-06 10:09:11.000000000 -0800
++++ b/c++/src/objtools/align_format/showalign.cpp	2023-08-24 15:48:58.358822046 -0700
 @@ -1787,11 +1787,31 @@ void CDisplaySeqalign::x_PrepareIdentity
      aln_vec_info->positive = 0;
      aln_vec_info->gap = 0;
@@ -1444,8 +1455,8 @@
          }else
          {
              out<<" Score = "<<bit_score_buf<<" ";
---- ncbi-blast-2.13.0+-src-orig/c++/include/objtools/align_format/showalign.hpp	2020-12-14 07:36:59.000000000 -0800
-+++ ncbi-blast-2.13.0+-src-new/c++/include/objtools/align_format/showalign.hpp	2022-10-24 14:04:18.609811127 -0700
+--- a/c++/include/objtools/align_format/showalign.hpp	2020-12-14 07:36:59.000000000 -0800
++++ b/c++/include/objtools/align_format/showalign.hpp	2023-08-24 15:48:58.359822025 -0700
 @@ -591,6 +591,17 @@ protected:
          int positive;
          int gap;
@@ -1499,8 +1510,8 @@
  
      ///set feature info
      ///@param feat_info: feature to fill in
---- ncbi-blast-2.13.0+-src-orig/c++/src/algo/blast/core/blast_setup.c	2016-06-20 08:45:40.000000000 -0700
-+++ ncbi-blast-2.13.0+-src-new/c++/src/algo/blast/core/blast_setup.c	2022-10-24 14:04:18.609811127 -0700
+--- a/c++/src/algo/blast/core/blast_setup.c	2016-06-20 08:45:40.000000000 -0700
++++ b/c++/src/algo/blast/core/blast_setup.c	2023-08-24 15:48:58.359822025 -0700
 @@ -36,6 +36,8 @@
  #include <algo/blast/core/blast_util.h>
  #include <algo/blast/core/blast_filter.h>
@@ -1543,8 +1554,8 @@
          Blast_PerrorWithLocation(blast_message, status, kBlastMessageNoContext);
          return status;
      }
---- ncbi-blast-2.13.0+-src-orig/c++/src/objtools/align_format/tabular.cpp	2021-09-16 08:24:06.000000000 -0700
-+++ ncbi-blast-2.13.0+-src-new/c++/src/objtools/align_format/tabular.cpp	2022-10-24 14:04:18.610811119 -0700
+--- a/c++/src/objtools/align_format/tabular.cpp	2023-04-10 11:34:52.000000000 -0700
++++ b/c++/src/objtools/align_format/tabular.cpp	2023-08-24 15:48:58.360822005 -0700
 @@ -971,7 +971,11 @@ int CBlastTabularInfo::SetFields(const C
          x_IsFieldRequested(eBTOP) ||
          (x_IsFieldRequested(eNumIdentical) && !kNoFetchSequence) ||
@@ -1843,8 +1854,8 @@
      case ePositives:
          x_PrintNumPositives(); break;
      case eGapOpenings:
---- ncbi-blast-2.13.0+-src-orig/c++/include/objtools/align_format/tabular.hpp	2021-09-16 08:24:06.000000000 -0700
-+++ ncbi-blast-2.13.0+-src-new/c++/include/objtools/align_format/tabular.hpp	2022-10-24 14:04:18.610811119 -0700
+--- a/c++/include/objtools/align_format/tabular.hpp	2021-09-16 08:24:06.000000000 -0700
++++ b/c++/include/objtools/align_format/tabular.hpp	2023-08-24 15:48:58.360822005 -0700
 @@ -135,6 +135,18 @@ public:
      void SetCustomDelim(string customDelim) {
          x_SetFieldDelimiter(eCustom,customDelim);    
@@ -1949,8 +1960,8 @@
  inline void CBlastTabularInfo::SetNoFetch(bool nofetch)
  {
      m_NoFetch = nofetch;
---- ncbi-blast-2.13.0+-src-orig/c++/src/objtools/align_format/format_flags.cpp	2018-10-23 07:28:28.000000000 -0700
-+++ ncbi-blast-2.13.0+-src-new/c++/src/objtools/align_format/format_flags.cpp	2022-10-24 14:04:18.610811119 -0700
+--- a/c++/src/objtools/align_format/format_flags.cpp	2018-10-23 07:28:28.000000000 -0700
++++ b/c++/src/objtools/align_format/format_flags.cpp	2023-08-24 15:48:58.361821984 -0700
 @@ -40,7 +40,7 @@ string kDfltArgTabularOutputFmt =
      "evalue bitscore";
  const string kDfltArgTabularOutputFmtTag("std");
@@ -1993,8 +2004,8 @@
      SFormatSpec("positive", 
                  "Number of positive-scoring matches", 
                  ePositives),
---- ncbi-blast-2.13.0+-src-orig/c++/include/objtools/align_format/format_flags.hpp	2018-10-23 07:27:09.000000000 -0700
-+++ ncbi-blast-2.13.0+-src-new/c++/include/objtools/align_format/format_flags.hpp	2022-10-24 14:04:18.611811111 -0700
+--- a/c++/include/objtools/align_format/format_flags.hpp	2018-10-23 07:27:09.000000000 -0700
++++ b/c++/include/objtools/align_format/format_flags.hpp	2023-08-24 15:48:58.361821984 -0700
 @@ -114,6 +114,16 @@ enum ETabularField {
      ePercentIdentical,     ///< Percentage of identical matches
      eNumIdentical,         ///< Number of identical matches
@@ -2012,8 +2023,8 @@
      ePositives,            ///< Number of positive-scoring matches
      eGapOpenings,          ///< Number of gap openings
      eGaps,                 ///< Total number of gaps
---- ncbi-blast-2.13.0+-src-orig/c++/include/algo/blast/api/blast_exception.hpp	2018-11-27 10:22:00.000000000 -0800
-+++ ncbi-blast-2.13.0+-src-new/c++/include/algo/blast/api/blast_exception.hpp	2022-10-31 15:50:28.555542843 -0700
+--- a/c++/include/algo/blast/api/blast_exception.hpp	2018-11-27 10:22:00.000000000 -0800
++++ b/c++/include/algo/blast/api/blast_exception.hpp	2023-08-24 15:48:58.362821964 -0700
 @@ -83,7 +83,8 @@ public:
          eSeqSrcInit,        ///< Initialization error in BlastSeqSrc 
                              /// implementation
@@ -2032,8 +2043,8 @@
          default:                    return CException::GetErrCodeString();
          }
      }
---- ncbi-blast-2.13.0+-src-orig/c++/src/algo/blast/api/blast_setup.hpp	2016-10-17 12:00:07.000000000 -0700
-+++ ncbi-blast-2.13.0+-src-new/c++/src/algo/blast/api/blast_setup.hpp	2022-11-01 11:04:42.182938008 -0700
+--- a/c++/src/algo/blast/api/blast_setup.hpp	2016-10-17 12:00:07.000000000 -0700
++++ b/c++/src/algo/blast/api/blast_setup.hpp	2023-08-24 15:48:58.362821964 -0700
 @@ -192,7 +192,10 @@ public:
      TSeqPos size() const {
          TSeqPos retval = x_Size();
@@ -2046,8 +2057,8 @@
                         "Sequence contains no data");
          }
          return retval;
---- ncbi-blast-2.13.0+-src-orig/c++/src/algo/blast/api/blast_setup_cxx.cpp	2021-05-07 05:10:35.000000000 -0700
-+++ ncbi-blast-2.13.0+-src-new/c++/src/algo/blast/api/blast_setup_cxx.cpp	2022-11-01 11:03:19.591603662 -0700
+--- a/c++/src/algo/blast/api/blast_setup_cxx.cpp	2021-05-07 05:10:35.000000000 -0700
++++ b/c++/src/algo/blast/api/blast_setup_cxx.cpp	2023-08-24 15:48:58.362821964 -0700
 @@ -628,7 +628,14 @@ SetupQueries_OMF(IBlastQuerySource& quer
              // s_AddMask releases the elements of frame_to_bsl that it uses;
              // the rest are freed by frame_to_bsl in the destructor.
@@ -2073,3 +2084,16 @@
          ctx_index += kNumContexts;
      }
      
+--- a/c++/src/algo/blast/core/blast_hits.c	2019-10-09 04:00:47.000000000 -0700
++++ b/c++/src/algo/blast/core/blast_hits.c	2023-08-24 15:48:58.363821943 -0700
+@@ -3452,7 +3452,9 @@ static int s_SortHspWrapRawScore(const v
+     if (wrap1->hsp->score < wrap2->hsp->score)
+         return 1;
+ 
+-    return 0;
++    // RMH: For results with equal scores, order will be determined by
++    //      ordinal ids of the subject sequences.
++    return BLAST_CMP(wrap2->hsplist->oid, wrap1->hsplist->oid);
+ }
+ 
+ // Masklevel filtering for rmblastn. -RMH-
diff --git a/recipes/rmblast/meta.yaml b/recipes/rmblast/meta.yaml
index 520df7d19e787..423e85e5dfe61 100644
--- a/recipes/rmblast/meta.yaml
+++ b/recipes/rmblast/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "RMBlast" %}
-{% set version = "2.14.0" %}
-{% set sha256 = "bf477f1b0c3b82f0b7a7094bf003a9a83e37e3b0716c1df799060c4feab17500" %}
+{% set version = "2.14.1" %}
+{% set sha256 = "712c2dbdf0fb13cc1c2d4f4ef5dd1ce4b06c3b57e96dfea8f23e6e99f5b1650e" %}
 
 package:
   name: {{ name|lower }}
@@ -11,38 +11,36 @@ source:
   sha256: {{ sha256 }}
   patches:
     #- isb-{{ version }}+-{{ name }}.patch # Needs the -p1 option, applied in build.sh
-    # patch taken from http://www.repeatmasker.org/rmblast/isb-2.14.0+-rmblast.patch.gz
+    # patch taken from http://www.repeatmasker.org/rmblast/isb-2.14.1+-rmblast.patch.gz
+    - isb-2.14.1+-rmblast.patch
     - configurellvm.patch
     - get_species_taxids.patch
     - phonehome.patch
 
 build:
-  number: 1
-  skip: True # [osx]
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('rmblast', max_pin="x") }}
 
 requirements:
   build:
     - make
     - {{ compiler('cxx') }}
   host:
-    - bzip2
     - zlib
-    - pcre
+    - bzip2
     - entrez-direct
+    - pcre
     - curl
-    - nettle
     - time
   run:
-    - bzip2
     - zlib
-    - pcre
+    - bzip2
+    - entrez-direct
     - perl
     - perl-list-moreutils
     - perl-archive-tar
     - perl-json
-    - entrez-direct
-    - curl
-    - nettle
 
 test:
   commands:
@@ -82,3 +80,5 @@ about:
 extra:
   identifiers:
     - biotools:rmblast
+  recipe-maintainers:
+    - mencian
diff --git a/recipes/rnachipintegrator/meta.yaml b/recipes/rnachipintegrator/meta.yaml
index b6907f8bef2de..4c0073646a6dc 100644
--- a/recipes/rnachipintegrator/meta.yaml
+++ b/recipes/rnachipintegrator/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "rnachipintegrator" %}
-{% set version = "2.0.0" %}
+{% set version = "3.0.0" %}
 
 package:
   name: '{{ name|lower }}'
@@ -7,14 +7,16 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/RnaChipIntegrator-{{ version }}.tar.gz
-  sha256: 97adf6e8a71bfdef7661472540d661f0965ed6c2140f1d268f57a5e5bbd873b0
+  sha256: bdb5cd278a2d93bc7c0e3a7980609db5f24ffa0199b8857818ec8481c59ea0ed
 
 build:
-  number: 1
+  number: 0
   entry_points:
     - RnaChipIntegrator = rnachipintegrator.cli:main
   script: python -m pip install --no-deps --ignore-installed .
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('rnachipintegrator', max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/rnamining/meta.yaml b/recipes/rnamining/meta.yaml
new file mode 100644
index 0000000000000..75d6dbef536c0
--- /dev/null
+++ b/recipes/rnamining/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "rnamining" %}
+{% set version = "1.0.4" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/rnamining-{{ version }}.tar.gz
+  sha256: 03339dd81c1b163b966006559b50fbdca21481d3d82b14f52849b331d105012f
+
+build:
+  entry_points:
+    - rnamining = rnamining.rnamining:main
+  noarch: python
+  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('rnamining',max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.8
+    - pip
+  run:
+    - python >=3.8
+    - scipy
+    - biopython >=1.78
+    - scikit-learn >=0.21.3
+    - pandas >=0.23.3
+    - xgboost ==1.2.0
+
+test:
+  imports:
+    - rnamining
+  commands:
+    - rnamining -h
+
+about:
+  home: https://github.com/lfreitasl/RNAmining/tree/pypackage
+  summary: Package to predict potential coding of RNA sequences provided in fasta format
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - lfreitasl
diff --git a/recipes/rnanorm/meta.yaml b/recipes/rnanorm/meta.yaml
new file mode 100644
index 0000000000000..ee38e16598b55
--- /dev/null
+++ b/recipes/rnanorm/meta.yaml
@@ -0,0 +1,52 @@
+{% set name = "rnanorm" %}
+{% set version = "2.1.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/rnanorm-{{ version }}.tar.gz
+  sha256: 651bce77059548b907a4719615646898b6b51fe6915ba713686d2e6aa42d687f
+
+build:
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+  entry_points:
+    - rnanorm = rnanorm.cli:main
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+
+requirements:
+  host:
+    - python >=3.8,<3.13
+    - setuptools >=64.0.0
+    - setuptools-scm >=6.4.0
+    - pip
+  run:
+    - python >=3.8,<3.13
+    - click
+    - numpy >=1.0.0
+    - pandas >=1.0.0
+    - scikit-learn >=1.0.0
+    - pandera
+
+test:
+  imports:
+    - rnanorm
+  commands:
+    - pip check
+    - rnanorm --help
+  requires:
+    - pip
+
+about:
+  summary: Common RNA-seq normalization methods
+  license: Apache-2.0
+  license_file: LICENSE
+  home: https://github.com/genialis/RNAnorm
+
+extra:
+  recipe-maintainers:
+    - VinzentRisch
diff --git a/recipes/rnaredprint/meta.yaml b/recipes/rnaredprint/meta.yaml
index 9944a76bd3a96..93f3273933725 100644
--- a/recipes/rnaredprint/meta.yaml
+++ b/recipes/rnaredprint/meta.yaml
@@ -1,5 +1,5 @@
-{% set version="0.3pre" %}
-{% set sha256="bcf55ff2e51c659003d231df06d643521c6c106bbbbac2b1190d879b46281ecf" %}
+{% set version="0.3" %}
+{% set sha256="414f5af9f4c737b532b863ce3c000943fe12e663d3512d8a59652b5b1b19f774" %}
 {% set vrnaversion="2.4" %}
 
 package:
@@ -13,7 +13,7 @@ about:
   summary: Tree-decomposition based dynamic programming algorithm for multiple target RNA design
 
 build:
-  number: 4
+  number: 0
 
 source:
   url: "https://github.com/yannponty/RNARedPrint/archive/v{{ version }}.tar.gz"
diff --git a/recipes/rnastructure/meta.yaml b/recipes/rnastructure/meta.yaml
index d994092a66833..10976d6e6a4e0 100644
--- a/recipes/rnastructure/meta.yaml
+++ b/recipes/rnastructure/meta.yaml
@@ -1,13 +1,19 @@
+{% set name = "RNAstructure" %}
+{% set version = "6.4" %}
+{% set sha256 = "e2a372a739153293185eeffee3d3265f9f50dc6976053a1d013ccf086b06d975" %}
+
 package:
-  name: rnastructure
-  version: '6.3'
+  name: {{ name | lower }}
+  version: {{ version }}
 
 source:
-  sha256: e922591ceaa99e0db8ab4572a8716ff625fc0109906650415e92d099d927b310
-  url: http://rna.urmc.rochester.edu/Releases/6.3/RNAstructureSource.tgz
+  sha256: {{ sha256 }}
+  url: http://rna.urmc.rochester.edu/Releases/{{ version }}/RNAstructureSource.tgz
 
 build:
-  number: 3
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name | lower, max_pin="x.x") }}
 
 requirements:
   build:
diff --git a/recipes/rnavirhost/meta.yaml b/recipes/rnavirhost/meta.yaml
new file mode 100644
index 0000000000000..d0b9a19a495f6
--- /dev/null
+++ b/recipes/rnavirhost/meta.yaml
@@ -0,0 +1,50 @@
+{% set name = "rnavirhost" %}
+{% set version = "1.0.5" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: 09b903653fd85eba8479be866d4f4c3b29e37b6920c2581864a278acc35fb2e6
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - rnavirhost = rnavirhost.rnavirhost:main
+  script: "{{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation"
+  run_exports:
+    - {{ pin_subpackage('rnavirhost', max_pin="x") }}
+
+requirements:
+  host:
+    - pip
+    - python
+  run:
+    - biopython >=1.83
+    - numpy >=1.23.5
+    - pandas >=2.0.3
+    - python
+    - scikit-learn >=1.1.3
+    - xgboost >=1.7.4
+    - prodigal >=2.6.3
+    - blast >=2.12.0
+
+test:
+  imports:
+    - rnavirhost
+    - rnavirhost.modules
+  commands:
+    - rnavirhost --help
+
+about:
+  home: "https://github.com/GreyGuoweiChen/VirHost.git"
+  license: MIT
+  license_family: MIT
+  summary: "RNAVirHost: a machine learning-based method for predicting hosts of RNA viruses through viral genomes"
+
+extra:
+  recipe-maintainers:
+    - GreyGuoweiChen
diff --git a/recipes/robust-bias-aware/meta.yaml b/recipes/robust-bias-aware/meta.yaml
new file mode 100644
index 0000000000000..acc4799297c89
--- /dev/null
+++ b/recipes/robust-bias-aware/meta.yaml
@@ -0,0 +1,49 @@
+{% set name = "robust-bias-aware" %}
+{% set version = "0.0.1" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://github.com/lspindler2509/robust_bias_aware_pip_package/archive/refs/tags/v{{ version }}-xi.tar.gz"
+  sha256: 182c413b2f39b34d89fec657afdcf350a1c1a7b9f75b799746a3c0a18ce40744
+
+build:
+  number: 1
+  script: 
+    - "{{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation"
+    - mkdir -p $PREFIX/site-packages
+    - cp -r $SRC_DIR/robust_bias_aware/* $PREFIX/site-packages
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage('robust-bias-aware', max_pin="x.x") }}
+
+requirements:
+  build:
+    - python
+    - setuptools
+  host:
+    - pip >=3.7
+    - python
+
+  run:
+    - numpy >=1.26.4
+    - matplotlib-base >=3.2.2
+    - pandas >=1.3.5
+    - networkx >=2.6.3
+    - pcst-fast
+    - python >=3.7
+
+
+test:
+  commands:
+    - robust-bias-aware --help
+
+
+about:
+  home: https://github.com/bionetslab/robust_bias_aware_pip_package
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE
+  summary: "Robust bias aware."
diff --git a/recipes/rosella/meta.yaml b/recipes/rosella/meta.yaml
index d32d59af789c3..090fd11d0e2ac 100644
--- a/recipes/rosella/meta.yaml
+++ b/recipes/rosella/meta.yaml
@@ -1,6 +1,6 @@
-{% set version = "0.4.2" %}
+{% set version = "0.5.3" %}
 {% set name = "rosella" %}
-{% set hash = "1a3d62da637d7cca45c72d33a120edec31aca1626862e243d2b8076cda52fdfc" %}
+{% set hash = "a7a07f3217c40bc0308eb2fb964092662d6c99f4093e68e96c9575bce208d214" %}
 
 package:
   name: rosella
@@ -11,12 +11,13 @@ source:
   sha256: {{ hash }}
 
 build:
-  number: 2
+  number: 0
   skip: True  # [osx]
-
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 requirements:
   build:
-    - rust >=1.40
+    - rust >=1.70
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
     - pkg-config
@@ -30,11 +31,29 @@ requirements:
     - openssl
     - clangdev
   run:
-    - parallel
-    - samtools
-    - starcode
-    - bwa
-    - minimap2
+    - coverm >=0.6.1
+    - python >=3.8,<=3.10
+    - numba >=0.53,<=0.57
+    - numpy <=1.24
+    - joblib >=1.1.0,<=1.3
+    - scikit-bio >=0.5.7
+    - umap-learn >=0.5.3
+    - scipy <=1.11
+    - pandas >=1.3
+    - pynndescent >=0.5.7
+    - hdbscan >=0.8.28
+    - scikit-learn >=1.0.2,<=1.1
+    - flight-genome >=1.6.0
+    - coverm >=0.6.1
+    - biopython >=1.81
+    - seaborn >=0.12
+    - imageio >=2.31
+    - matplotlib-base >=3.8
+    - tqdm >=4.66
+    - tbb >=2021.10.0
+    - joblib >=1.3.0
+    - pebble >=5.0
+    - threadpoolctl >=3.2.0
 
 test:
   commands:
diff --git a/recipes/rrikindp/build.sh b/recipes/rrikindp/build.sh
new file mode 100644
index 0000000000000..f76fe49b36083
--- /dev/null
+++ b/recipes/rrikindp/build.sh
@@ -0,0 +1,8 @@
+#!/bin/sh
+
+$PYTHON -m pip install . --no-deps --ignore-installed -vv
+
+cd src/rrikindp
+
+make -j ${CPU_COUNT} CXXFLAGS+="-I${CONDA_PREFIX}/include"
+install RRIkinDP "${PREFIX}/bin"
diff --git a/recipes/rrikindp/meta.yaml b/recipes/rrikindp/meta.yaml
new file mode 100644
index 0000000000000..3e89245d087da
--- /dev/null
+++ b/recipes/rrikindp/meta.yaml
@@ -0,0 +1,66 @@
+ 
+{% set name = "RRIkinDP" %}
+{% set version = "0.0.2" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/mwaldl/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 3bdaa7657224b90945d864d0238010cf3337975f58c41106ab60427dd52bc93f
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('rrikindp', max_pin="x.x,x") }}
+
+requirements:
+  build:
+    - python
+    - pip
+    - make
+    - pybind11
+    - {{ compiler('cxx') }}
+  host:
+    - pybind11
+    - python
+    - boost-cpp
+    - viennarna >=2.6.0
+    - intarna
+    - llvm-openmp
+  run:
+    - boost-cpp
+    - llvm-openmp
+    - python >=3.6
+    - intarna
+    - viennarna >=2.6.0
+    - matplotlib-base >=3.7.0
+    - seaborn >=0.12.0
+    - pandas >=2.0.0
+
+test:
+  commands:
+    - RRIkinDP --version
+  imports:
+    - rrikindp
+
+about:
+  home: "https://github.com/mwaldl/RRIkinDP"
+  license: "GPL-3.0-only"
+  license_family: GPL
+  license_file: COPYING
+  summary: 'Evaluation of thermodynamic and kinetic features of RNA-RNA interactions.'
+  description: |
+    RRIkinDP evaluated thermodynamic and kinetic features of RNA-RNA interactions. As input, two RNA
+    sequences as well as their interaction structure is provided. The tool generates the state space of
+    all intermediate interactions from single base pair interactions to the full input interaction.
+    On top of this state space it computes the barrier energy for the best direct path from a given
+    start interaction to the full input interaction.
+  doc_url: https://doi.org/10.1101/2023.07.28.548983
+  dev_url: https://github.com/mwaldl/RRIkinDP
+
+extra:
+  recipe-maintainers:
+    - mwaldl
+    - s-will
diff --git a/recipes/rrmscorer/meta.yaml b/recipes/rrmscorer/meta.yaml
index ffb6879b5e311..2ff2cab297ffa 100644
--- a/recipes/rrmscorer/meta.yaml
+++ b/recipes/rrmscorer/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "rrmscorer" %}
-{% set version = "1.0.8" %}
+{% set version = "1.0.9" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,27 +7,32 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 6df8179adaf0ac0b6a6ff48cd9eab92e2e7b78df21bdc2f22cedc9db67cf8fea
+  sha256: 2058ec1af72ff6ed0d026a643d0358c3e06f7cdb25615bba66b05554df2d76fa
 
 build:
   noarch: python
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
   number: 0
+  entry_points:
+    - rrmscorer=rrmscorer.__main__:main
+  run_exports:
+    - {{ pin_subpackage('rrmscorer', max_pin="x") }}
 
 requirements:
   host:
     - pip
     - python >=3.9
   run:
-    - biopython ==1.79
+    - biopython
     - hmmer
-    - logomaker ==0.8
+    - logomaker
     - matplotlib-base
-    - numpy ==1.22.3
-    - pandas ==1.4.2
+    - numpy
+    - pandas
     - python >=3.9
-    - requests ==2.28.2
-    - scikit-learn ==1.1.1
+    - requests
+    - scikit-learn
+    - seaborn
 
 test:
   commands:
@@ -43,9 +48,9 @@ about:
   dev_url: https://bitbucket.org/bio2byte/rrmscorer/
   doc_url: https://pypi.org/project/rrmscorer
   doc_source_url: https://bitbucket.org/bio2byte/rrmscorer/raw/master/readme.md
-  license: "GNU General Public v3 (GPLv3)"
-  license_family: GPL3
-  license_file:
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
   summary: "RRMScorer (RRM-RNA score predictor) predicts how likely a single RRM is to bind ssRNA"
   description: |
     RRMScorer (RRM-RNA score predictor) allows the user to easily predict
@@ -63,6 +68,7 @@ about:
     the Marie Skłodowska-Curie grant agreement No. 813239.
 
     Wim Vranken, Bio2Byte group within the RNAct project, VUB, Belgium.
+
 extra:
   recipe-maintainers:
     - JoelRoca
diff --git a/recipes/rseqc/meta.yaml b/recipes/rseqc/meta.yaml
index 47534667bf70d..4ed0f9d60b2a8 100644
--- a/recipes/rseqc/meta.yaml
+++ b/recipes/rseqc/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "RSeQC" %}
-{% set version = "5.0.1" %}
+{% set version = "5.0.3" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 3c7d458784861af352d8da3f4f1cc8941934b37643164e9b74f929a32bd9ca80
+  sha256: 869f542e08f50c8874280d58e4f5565857b0aebac66a8eceef3f23016175061e
 
 build:
   number: 1
   skip: True  # [py2k]
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --use-pep517 -vvv"
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x") }}
 
 requirements:
   build:
@@ -46,6 +48,8 @@ about:
   license_family: GPL2
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:rseqc
     - doi:10.1093/bioinformatics/bts356
diff --git a/recipes/rsrq/build.sh b/recipes/rsrq/build.sh
new file mode 100644
index 0000000000000..be24ecc64d3c6
--- /dev/null
+++ b/recipes/rsrq/build.sh
@@ -0,0 +1,10 @@
+#!/bin/bash -euo
+export CFLAGS="${CFLAGS} -fcommon"
+export CXXFLAGS="${CFLAGS} -fcommon"
+
+# Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
+# We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
+export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="$(pwd)/.cargo"
+
+# build statically linked binary with Rust
+RUST_BACKTRACE=1 cargo install --verbose --root $PREFIX --path .
diff --git a/recipes/rsrq/meta.yaml b/recipes/rsrq/meta.yaml
new file mode 100644
index 0000000000000..b0461e51ca7d6
--- /dev/null
+++ b/recipes/rsrq/meta.yaml
@@ -0,0 +1,34 @@
+{% set name = "rsrq" %}
+{% set version = "1.1.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/aaronmussig/rsrq/archive/v{{version}}.tar.gz
+  sha256: b1bf3c2467b9c56f2a5cdea15a5a89a6c392888240190f115d5a50e82668a0ee
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('rsrq', max_pin="x") }}
+
+requirements:
+  build:
+    - {{ compiler('rust') }}
+
+test:
+  commands:
+    - {{ name }} --version | grep '{{ version }}'
+
+about:
+  home: https://github.com/aaronmussig/rsrq
+  license: GNU General Public v3 (GPLv3)
+  license_family: GPL3
+  license_file: LICENSE
+  summary: A minimal Redis-backed queue system.
+
+extra:
+  recipe-maintainers:
+    - aaronmussig
diff --git a/recipes/rsv-typer/meta.yaml b/recipes/rsv-typer/meta.yaml
new file mode 100644
index 0000000000000..454e207a3ea42
--- /dev/null
+++ b/recipes/rsv-typer/meta.yaml
@@ -0,0 +1,40 @@
+{% set version = "0.3.0" %}
+
+package:
+  name: rsv-typer
+  version: {{ version }}
+
+source:
+  url: https://github.com/DiltheyLab/RSVTyper/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: d91607ebe37c305fb3aba4871161d51c6fa2bd7aa43d5d6defcca8d9def74431
+
+build:
+  number: 1
+  noarch: python
+  script: python -m pip install .
+  entry_points:
+    - rsv-typer = rsv_typer.process_RSV_sample:main
+  run_exports:
+    - {{ pin_subpackage("rsv-typer", max_pin="x.x") }}
+requirements:
+  host:
+    - python
+  run:
+    - python >=3
+    - artic =1.2.1
+    - nextclade =2.14.0
+    - samtools >=1.10
+    - minimap2 >=2.17
+    - muscle =3.8
+    - pyvcf =0.6.8=py36h9f0ad1d_1002
+    - absl-py =1.4.0
+    - longshot =0.4.5
+test:
+  commands:
+    - rsv-typer -h
+
+about:
+  home: https://github.com/DiltheyLab/RSVTyper
+  license: MIT
+  summary: Genotyping RSV samples from nanopore sequencing data
+
diff --git a/recipes/rtk2/build.sh b/recipes/rtk2/build.sh
new file mode 100644
index 0000000000000..0b901b830f550
--- /dev/null
+++ b/recipes/rtk2/build.sh
@@ -0,0 +1,16 @@
+#!/bin/bash
+set -euxo pipefail
+
+mkdir -p "$PREFIX"/bin
+
+echo "Setting environment variables"
+# Fix zlib
+export CFLAGS="$CFLAGS -O3 -I$PREFIX/include"
+export LDFLAGS="$LDFLAGS -L$PREFIX/lib"
+export C_INCLUDE_PATH=${PREFIX}/include
+
+echo "RUN MAKE"
+make test
+
+chmod 755 rtk2
+mv rtk2 "$PREFIX"/bin/
diff --git a/recipes/rtk2/meta.yaml b/recipes/rtk2/meta.yaml
new file mode 100644
index 0000000000000..028a06a5a239b
--- /dev/null
+++ b/recipes/rtk2/meta.yaml
@@ -0,0 +1,35 @@
+{% set version = "2.11.2" %}
+{% set name = "rtk2" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/hildebra/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: ea32bf15f8dfd3245ed82fae8cd3330d1487b506de13c689764161c791a31dcc
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+    
+requirements:
+  build:
+    - make
+    - {{ compiler('cxx') }}
+  host:
+    - zlib
+
+test:
+  commands:
+    - '{{ name }} -h'
+    #- '{{ name }} --version | grep -w "{{ version }}"'
+
+about:
+  home: https://github.com/hildebra/rtk2/
+  license: 'GPL-2.0-or-later'
+  license_family: GPL
+  license_file: LICENSE
+  summary: 'rtk2 - a CLI rarefaction toolkit for OTU tables'
+  dev_url: https://github.com/hildebra/rtk2/
diff --git a/recipes/runjob/meta.yaml b/recipes/runjob/meta.yaml
index 76d1832ef7fc5..b72d313a2fd04 100644
--- a/recipes/runjob/meta.yaml
+++ b/recipes/runjob/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "2.10.5" %}
+{% set version = "2.10.6" %}
 {% set bc = "batchcompute" %}
 {% set bcv = "2.1.7" %}
 
@@ -8,20 +8,23 @@ package:
 
 source:
   url: https://github.com/yodeng/runjob/archive/v{{ version }}.tar.gz
-  sha256: 82e96404a91ee6f5d9daa67af329d5e8b680860f08681e7b5b24a20b29e67811
+  sha256: bb87cc67abeafd3374d5668d2eacee5e64d0949205fac274b7b715e464680fbe
 
 build:
   number: 0
   noarch: python
-  script: {{ PYTHON }} -m pip install -vv --no-deps . https://pypi.io/packages/source/{{ bc[0] }}/{{ bc }}/{{ bc }}-{{ bcv }}.tar.gz
+  script: {{ PYTHON }} -m pip install -vvv --no-deps --no-build-isolation . https://pypi.io/packages/source/{{ bc[0] }}/{{ bc }}/{{ bc }}-{{ bcv }}.tar.gz
+  entry_points:
+    - runjob = runjob.qsub:main
+  run_exports:
+    - {{ pin_subpackage('runjob', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - python >=2.7.10,<3.11
+    - python >=3.5
   run:
-    - pip
-    - python >=2.7.10,<3.11
+    - python >=3.5
     - psutil >=5.7.0
     - ratelimiter >=1.2.0
     - prettytable >=3.2.0
@@ -37,5 +40,7 @@ test:
 about:
   home: https://github.com/yodeng/runjob
   license: MIT
+  license_family: MIT
+  license_file: LICENSE
   summary: "Manage jobs or pipeline of bioinfomation."
   description: "Runjob is a program for managing a group of related bioinformatic jobs or pipelines running on a compute cluster."
diff --git a/recipes/rust-bio-tools/build.sh b/recipes/rust-bio-tools/build.sh
index 403679dd60ea7..c5cc18c7f9bc5 100644
--- a/recipes/rust-bio-tools/build.sh
+++ b/recipes/rust-bio-tools/build.sh
@@ -1,11 +1,6 @@
 #!/bin/bash -e
 
-# TODO: Remove the following export when pinning is updated and we use
-#       {{ compiler('rust') }} in the recipe.
-export \
-    CARGO_NET_GIT_FETCH_WITH_CLI=true \
-    CARGO_HOME="${BUILD_PREFIX}/.cargo"
-
 export BINDGEN_EXTRA_CLANG_ARGS="${CFLAGS} ${CPPFLAGS} ${LDFLAGS}"
 
+RUST_BACKTRACE=1
 cargo install --no-track --verbose --root "${PREFIX}" --path .
diff --git a/recipes/rust-bio-tools/build_failure.linux-64.yaml b/recipes/rust-bio-tools/build_failure.linux-64.yaml
deleted file mode 100644
index 26ac40babfcbc..0000000000000
--- a/recipes/rust-bio-tools/build_failure.linux-64.yaml
+++ /dev/null
@@ -1,104 +0,0 @@
-recipe_sha: 37fa4d78a2ee8b18065a0bd0f594ad1e9587bb4ac7edf1b4629a9f10fa45d0a5  # The commit at which this recipe failed to build.
-skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
-log: |2-
-     Compiling linear-map v1.2.0
-       Running rustc --crate-name linear_map /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/linear-map-1.2.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no -C metadata=49dea80bcdb65bf0 -C extra-filename=-49dea80bcdb65bf0 --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --cap-lints allow
-     Compiling ieee754 v0.2.6
-       Running rustc --crate-name ieee754 /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/ieee754-0.2.6/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no -C metadata=3d851bc61679c0fc -C extra-filename=-3d851bc61679c0fc --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --cap-lints allow
-     Compiling strum v0.23.0
-       Running rustc --crate-name strum --edition=2018 /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/strum-0.23.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' -C metadata=bd8b155d4a3212cb -C extra-filename=-bd8b155d4a3212cb --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --cap-lints allow
-     Compiling bio v0.39.2
-       Running rustc --crate-name bio --edition=2018 /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/bio-0.39.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no -C metadata=bfcb0c8ea87843f8 -C extra-filename=-bfcb0c8ea87843f8 --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --extern anyhow=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libanyhow-8a64e709a9ea7090.rmeta --extern approx=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libapprox-796d96a1d4a24564.rmeta --extern bio_types=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libbio_types-8f2580fc26dc2a4c.rmeta --extern bit_set=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libbit_set-5f69a9e374261aee.rmeta --extern bv=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libbv-c65acac672bf1382.rmeta --extern bytecount=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libbytecount-49ce67f909ab9836.rmeta --extern csv=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libcsv-0a2495576c650dd0.rmeta --extern custom_derive=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libcustom_derive-a31ad87d2c35141e.rmeta --extern enum_map=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libenum_map-e623b86d6eda7738.rmeta --extern fxhash=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libfxhash-b9c70ea26a93b20f.rmeta --extern getset=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libgetset-4a8df41f803195c1.so --extern itertools=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libitertools-f77dc74df281f0e9.rmeta --extern itertools_num=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libitertools_num-2f4a9790e16745e6.rmeta --extern lazy_static=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/liblazy_static-aef73a8347dc17b1.rmeta --extern multimap=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libmultimap-b0e538eda3526cdf.rmeta --extern ndarray=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libndarray-ef7993ff5859fb97.rmeta --extern newtype_derive=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libnewtype_derive-a5908103a51871d4.rmeta --extern num_integer=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libnum_integer-b03516cba3dc07e2.rmeta --extern num_traits=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libnum_traits-d20b06288d507dcf.rmeta --extern ordered_float=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libordered_float-a04622cb02bc5a6f.rmeta --extern petgraph=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libpetgraph-f249a594137b7f6e.rmeta --extern rand=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/librand-776acd9a3185d913.rmeta --extern regex=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libregex-88299f7761f9c60d.rmeta --extern serde=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libserde-7d6c4f20cee1b377.rmeta --extern serde_derive=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libserde_derive-c1fd716d558cc7fa.so --extern statrs=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libstatrs-9170518eab8196ec.rmeta --extern strum=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libstrum-bd8b155d4a3212cb.rmeta --extern strum_macros=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libstrum_macros-5d4b4ce44430108b.so --extern thiserror=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libthiserror-1d405cc10f35d668.rmeta --extern triple_accel=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libtriple_accel-744d8b0eeecdf446.rmeta --extern vec_map=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libvec_map-daef5ce73b6a7510.rmeta --cap-lints allow
-     Compiling tempfile v3.5.0
-       Running rustc --crate-name tempfile --edition=2018 /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/tempfile-3.5.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no -C metadata=984bbc1631ac0d4a -C extra-filename=-984bbc1631ac0d4a --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --extern cfg_if=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libcfg_if-1cc625933ee68d00.rmeta --extern fastrand=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libfastrand-ee1f69f245bfe81a.rmeta --extern rustix=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/librustix-e70d1125d1402ad4.rmeta --cap-lints allow
-       Running rustc --crate-name rgsl /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/GSL-1.1.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type dylib --crate-type rlib --emit=dep-info,link -C prefer-dynamic -C opt-level=3 -C embed-bitcode=no --cfg 'feature="v2"' -C metadata=f9a0167cc0ea59a9 -C extra-filename=-f9a0167cc0ea59a9 --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --extern c_vec=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libc_vec-d24918881fb43fb1.so --extern c_vec=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libc_vec-d24918881fb43fb1.rlib --extern libc=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/liblibc-0731363918231ed5.rlib --cap-lints allow -L native=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/lib -l gsl -l gslcblas -l m -l cblas -l m --cfg 'feature="v2"'
-     Compiling reqwest v0.9.24
-       Running rustc --crate-name reqwest /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/reqwest-0.9.24/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="default-tls"' --cfg 'feature="hyper-tls"' --cfg 'feature="native-tls"' --cfg 'feature="tls"' -C metadata=e5874b3f83f03ba1 -C extra-filename=-e5874b3f83f03ba1 --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --extern base64=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libbase64-a19d784f86588919.rmeta --extern bytes=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libbytes-3e7ae724b77406fb.rmeta --extern cookie=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libcookie-58754e0f73623939.rmeta --extern cookie_store=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libcookie_store-a04b026bdb49d687.rmeta --extern encoding_rs=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libencoding_rs-7b87e74193d0c407.rmeta --extern flate2=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libflate2-70dc71a48c006913.rmeta --extern futures=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libfutures-82cdf9f97ecdab5c.rmeta --extern http=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libhttp-7f8b83c7faa5bad9.rmeta --extern hyper=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libhyper-7943bea2a0ceffab.rmeta --extern hyper_tls=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libhyper_tls-7f8fbc2858a55a76.rmeta --extern log=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/liblog-6684351ec618d44f.rmeta --extern mime=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libmime-a05a37379b161b05.rmeta --extern mime_guess=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libmime_guess-1b2487e823506fa3.rmeta --extern native_tls=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libnative_tls-e50dec9310c1d4f2.rmeta --extern serde=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libserde-7d6c4f20cee1b377.rmeta --extern serde_json=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libserde_json-89fb4aba726d8fd2.rmeta --extern serde_urlencoded=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libserde_urlencoded-34e063fcff545fb3.rmeta --extern time=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libtime-14a856f0f5513dee.rmeta --extern tokio=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libtokio-7cf2810afdd496d2.rmeta --extern tokio_executor=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libtokio_executor-99a3d933a3bde1bc.rmeta --extern tokio_io=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libtokio_io-7dc5a2eeaf6caba3.rmeta --extern tokio_threadpool=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libtokio_threadpool-2737f5c5fb2b0b23.rmeta --extern tokio_timer=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libtokio_timer-18df72f395af0a55.rmeta --extern url=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/liburl-796aa9590a4d4722.rmeta --extern uuid=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libuuid-4f90eabc1e5c34d1.rmeta --cap-lints allow -L native=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/build/openssl-sys-ee91e98132c0c133/out/openssl-build/install/lib
-     Compiling tera v1.18.1
-       Running rustc --crate-name tera --edition=2018 /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/tera-1.18.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="builtins"' --cfg 'feature="chrono"' --cfg 'feature="chrono-tz"' --cfg 'feature="default"' --cfg 'feature="humansize"' --cfg 'feature="percent-encoding"' --cfg 'feature="rand"' --cfg 'feature="slug"' --cfg 'feature="urlencode"' -C metadata=966d160b89ea163c -C extra-filename=-966d160b89ea163c --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --extern chrono=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libchrono-89a888186eb22b5d.rmeta --extern chrono_tz=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libchrono_tz-b753c3237e3c7fbf.rmeta --extern globwalk=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libglobwalk-61174e9b3ae5e9d7.rmeta --extern humansize=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libhumansize-be7ba658b667f616.rmeta --extern lazy_static=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/liblazy_static-aef73a8347dc17b1.rmeta --extern percent_encoding=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libpercent_encoding-72cf279d7fef5fd6.rmeta --extern pest=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libpest-438ddbb2964fe264.rmeta --extern pest_derive=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libpest_derive-34cee7d48c31178c.so --extern rand=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/librand-776acd9a3185d913.rmeta --extern regex=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libregex-88299f7761f9c60d.rmeta --extern serde=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libserde-7d6c4f20cee1b377.rmeta --extern serde_json=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libserde_json-89fb4aba726d8fd2.rmeta --extern slug=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libslug-76fec5f36d416b3e.rmeta --extern thread_local=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libthread_local-b464f97d53aac3cd.rmeta --extern unic_segment=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libunic_segment-99bae7b6ba5ce771.rmeta --cap-lints allow
-     Compiling indicatif v0.11.0
-       Running rustc --crate-name indicatif /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/indicatif-0.11.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no -C metadata=06ccea25cd3ff8c1 -C extra-filename=-06ccea25cd3ff8c1 --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --extern console=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libconsole-1d6c5204c86792bd.rmeta --extern lazy_static=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/liblazy_static-aef73a8347dc17b1.rmeta --extern number_prefix=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libnumber_prefix-539ed0474b8cb3ca.rmeta --extern parking_lot=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libparking_lot-1cf157db8cfd6e1c.rmeta --extern regex=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libregex-88299f7761f9c60d.rmeta --cap-lints allow
-     Compiling ordered-float v0.5.2
-       Running rustc --crate-name ordered_float /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/ordered-float-0.5.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no -C metadata=1ebef4224276407e -C extra-filename=-1ebef4224276407e --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --extern num_traits=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libnum_traits-6aa76da748f47036.rmeta --extern unreachable=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libunreachable-94a8b606b3e4d516.rmeta --cap-lints allow
-     Compiling structopt v0.3.26
-       Running rustc --crate-name structopt --edition=2018 /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/structopt-0.3.26/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' -C metadata=1710fde95804ad58 -C extra-filename=-1710fde95804ad58 --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --extern clap=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libclap-3d4bf005a1c7cfcf.rmeta --extern lazy_static=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/liblazy_static-aef73a8347dc17b1.rmeta --extern structopt_derive=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libstructopt_derive-f7376ff427964336.so --cap-lints allow
-     Compiling rand v0.7.3
-       Running rustc --crate-name rand --edition=2018 /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/rand-0.7.3/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="alloc"' --cfg 'feature="default"' --cfg 'feature="getrandom"' --cfg 'feature="getrandom_package"' --cfg 'feature="libc"' --cfg 'feature="std"' -C metadata=3fa9641229006373 -C extra-filename=-3fa9641229006373 --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --extern getrandom_package=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libgetrandom-1fcfb9b16db7f095.rmeta --extern libc=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/liblibc-0731363918231ed5.rmeta --extern rand_chacha=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/librand_chacha-cc23ecaa15cfa639.rmeta --extern rand_core=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/librand_core-a96d615a8c0dca75.rmeta --cap-lints allow
-     Compiling rayon v1.7.0
-       Running rustc --crate-name rayon --edition=2021 /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/rayon-1.7.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no -C metadata=fa12cbfdd336486c -C extra-filename=-fa12cbfdd336486c --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --extern either=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libeither-22dbb8c1509ff59b.rmeta --extern rayon_core=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/librayon_core-f52a9815ab27f729.rmeta --cap-lints allow
-     Compiling fern v0.5.9
-       Running rustc --crate-name fern --edition=2018 /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/fern-0.5.9/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no -C metadata=b34cbfb0b0bdbf78 -C extra-filename=-b34cbfb0b0bdbf78 --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --extern chrono=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libchrono-89a888186eb22b5d.rmeta --extern log=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/liblog-6684351ec618d44f.rmeta --cap-lints allow
-     Compiling jsonm v0.1.4
-       Running rustc --crate-name jsonm /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/jsonm-0.1.4/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no -C metadata=b04562a7e837d49d -C extra-filename=-b04562a7e837d49d --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --extern regex=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libregex-88299f7761f9c60d.rmeta --extern serde=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libserde-7d6c4f20cee1b377.rmeta --extern serde_json=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libserde_json-89fb4aba726d8fd2.rmeta --cap-lints allow
-     Compiling itertools v0.9.0
-       Running rustc --crate-name itertools --edition=2018 /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/itertools-0.9.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="use_std"' -C metadata=98d11c369e8eac7e -C extra-filename=-98d11c369e8eac7e --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --extern either=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libeither-22dbb8c1509ff59b.rmeta --cap-lints allow
-     Compiling streaming-stats v0.2.3
-       Running rustc --crate-name stats /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/streaming-stats-0.2.3/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no -C metadata=841e89977bc962ef -C extra-filename=-841e89977bc962ef --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --extern num_traits=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libnum_traits-d20b06288d507dcf.rmeta --cap-lints allow
-     Compiling approx v0.4.0
-       Running rustc --crate-name approx /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/approx-0.4.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' -C metadata=cb99626e744706fd -C extra-filename=-cb99626e744706fd --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --extern num_traits=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libnum_traits-d20b06288d507dcf.rmeta --cap-lints allow
-     Compiling rustc-serialize v0.3.24
-       Running rustc --crate-name rustc_serialize /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/rustc-serialize-0.3.24/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no -C metadata=04bf5da549563244 -C extra-filename=-04bf5da549563244 --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --cap-lints allow
-     Compiling lz-str v0.1.0
-       Running rustc --crate-name lz_str --edition=2018 /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/lz-str-0.1.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type cdylib --crate-type rlib --emit=dep-info,link -C opt-level=3 -C embed-bitcode=no -C metadata=fa57445c11776e7e -C extra-filename=-fa57445c11776e7e --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --cap-lints allow
-       Running rustc --crate-name bzip2_sys /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/bzip2-sys-0.1.111.0.8/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="static"' -C metadata=36eb47ca640e666e -C extra-filename=-36eb47ca640e666e --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --extern libc=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/liblibc-0731363918231ed5.rmeta --cap-lints allow -L native=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/build/bzip2-sys-c7eb3073c8ac667e/out/lib -l static=bz2
-       Running rustc --crate-name zstd_sys --edition=2018 /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/zstd-sys-2.0.8zstd.1.5.5/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="legacy"' --cfg 'feature="zdict_builder"' -C metadata=0384f761716dfc01 -C extra-filename=-0384f761716dfc01 --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --extern libc=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/liblibc-0731363918231ed5.rmeta --cap-lints allow -L native=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/build/zstd-sys-ea5ebf1b5416cf7d/out -l static=zstd
-       Running /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/build/librocksdb-sys-f2c64cbc0e46c402/build-script-build
-       Running rustc --crate-name curl_sys --edition=2018 /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/curl-sys-0.4.62curl-8.1.0/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="openssl-sys"' --cfg 'feature="protocol-ftp"' --cfg 'feature="ssl"' --cfg 'feature="static-curl"' --cfg 'feature="static-ssl"' -C metadata=1c22fe32ec4c58ae -C extra-filename=-1c22fe32ec4c58ae --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --extern libc=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/liblibc-0731363918231ed5.rmeta --extern libz_sys=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/liblibz_sys-f37bec32b21ef27e.rmeta --extern openssl_sys=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/libopenssl_sys-e014ce30be3b6ca5.rmeta --cap-lints allow -L native=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/build/curl-sys-1684153d67f93086/out/build -l static=curl -L native=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/build/libz-sys-5d58d7855283952d/out/lib -L native=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/build/openssl-sys-ee91e98132c0c133/out/openssl-build/install/lib --cfg libcurl_vendored --cfg link_libz --cfg link_openssl
-       Running rustc --crate-name libxlsxwriter_sys --edition=2018 /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/libxlsxwriter-sys-1.1.5/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="no-md5"' --cfg 'feature="use-openssl-md5"' -C metadata=4957ba847f8189c2 -C extra-filename=-4957ba847f8189c2 --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --cap-lints allow -L native=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/build/libxlsxwriter-sys-f910310a21b7ae2e/out -l static=xlsxwriter
-     Compiling xlsxwriter v0.3.5
-       Running rustc --crate-name xlsxwriter --edition=2018 /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/xlsxwriter-0.3.5/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="no-md5"' --cfg 'feature="use-openssl-md5"' -C metadata=cb61c42d9cf38f2c -C extra-filename=-cb61c42d9cf38f2c --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --extern libxlsxwriter_sys=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/liblibxlsxwriter_sys-4957ba847f8189c2.rmeta --cap-lints allow -L native=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/build/libxlsxwriter-sys-f910310a21b7ae2e/out
-  error[E0412]: cannot find type size_t in crate libxlsxwriter_sys
-      --> /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/xlsxwriter-0.3.5/src/worksheet.rs:1126:52
-       |
-  1126 |                 buffer.len() as libxlsxwriter_sys::size_t,
-       |                                                    ^^^^^^ help: a type alias with a similar name exists: time_t
-       |
-      ::: /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/build/libxlsxwriter-sys-f910310a21b7ae2e/out/bindings.rs:398:1
-       |
-  398  | pub type time_t = __time_t;
-       | --------------- similarly named type alias time_t defined here
-
-  error[E0412]: cannot find type size_t in crate libxlsxwriter_sys
-      --> /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/xlsxwriter-0.3.5/src/worksheet.rs:1150:52
-       |
-  1150 |                 buffer.len() as libxlsxwriter_sys::size_t,
-       |                                                    ^^^^^^ help: a type alias with a similar name exists: time_t
-       |
-      ::: /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/build/libxlsxwriter-sys-f910310a21b7ae2e/out/bindings.rs:398:1
-       |
-  398  | pub type time_t = __time_t;
-       | --------------- similarly named type alias time_t defined here
-
-  error[E0063]: missing fields output_buffer and output_buffer_size in initializer of lxw_workbook_options
-    --> /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/xlsxwriter-0.3.5/src/workbook.rs:90:40
-     |
-  90 |             let mut workbook_options = libxlsxwriter_sys::lxw_workbook_options {
-     |                                        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ missing output_buffer and output_buffer_size
-
-  Some errors have detailed explanations: E0063, E0412.
-  For more information about an error, try rustc --explain E0063.
-  error: could not compile xlsxwriter due to 3 previous errors
-
-  Caused by:
-    process didn't exit successfully: rustc --crate-name xlsxwriter --edition=2018 /opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/.cargo/registry/src/github.com-1ecc6299db9ec823/xlsxwriter-0.3.5/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="no-md5"' --cfg 'feature="use-openssl-md5"' -C metadata=cb61c42d9cf38f2c -C extra-filename=-cb61c42d9cf38f2c --out-dir /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps -C linker=/opt/conda/conda-bld/rust-bio-tools_1685451378291/_build_env/bin/x86_64-conda-linux-gnu-cc -L dependency=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps --extern libxlsxwriter_sys=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/deps/liblibxlsxwriter_sys-4957ba847f8189c2.rmeta --cap-lints allow -L native=/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target/release/build/libxlsxwriter-sys-f910310a21b7ae2e/out (exit status: 1)
-  warning: build failed, waiting for other jobs to finish...
-  error: failed to compile rust-bio-tools v0.42.0 (/opt/conda/conda-bld/rust-bio-tools_1685451378291/work), intermediate artifacts can be found at /opt/conda/conda-bld/rust-bio-tools_1685451378291/work/target
-  Traceback (most recent call last):
-    File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
-      sys.exit(main())
-    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
-      call_conda_build(action, config)
-    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
-      result = api.build(
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
-      return build_tree(
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
-      packages_from_this = build(metadata, stats,
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
-      utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
-      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
-      raise subprocess.CalledProcessError(proc.returncode, _args)
-  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/rust-bio-tools_1685451378291/work/conda_build.sh']' returned non-zero exit status 101.
-# Last 100 lines of the build log.
diff --git a/recipes/rust-bio-tools/meta.yaml b/recipes/rust-bio-tools/meta.yaml
index 7e0e2da27e5b6..4df8383242ee8 100644
--- a/recipes/rust-bio-tools/meta.yaml
+++ b/recipes/rust-bio-tools/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.42.0" %}
+{% set version = "0.42.2" %}
 
 package:
   name: rust-bio-tools
@@ -7,16 +7,18 @@ package:
 build:
   number: 1
   skip: True # [osx]
+  run_exports:
+    - {{ pin_subpackage('rust-bio-tools', max_pin="x.x") }}
 
 source:
   url: https://github.com/rust-bio/rust-bio-tools/archive/v{{ version }}.tar.gz
-  sha256: 93642d7ebd4b85da8a043fd394a0c2d3ca112d0d8ecc0620cb8400ae703148ca
+  sha256: 860b29bb917f2d9ca1479d416b43856791c2ca726a0c22df30354bb5c44191c6
 
 requirements:
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
-    - rust >=1.30
+    - {{ compiler('rust') }}
     - clangdev
     - pkg-config
     - make
@@ -35,11 +37,15 @@ test:
 about:
   home: https://github.com/rust-bio/rust-bio-tools
   license: MIT
+  license_family: MIT
   summary: |
     A growing collection of fast and secure command line utilities for dealing with NGS data
     implemented on top of Rust-Bio.
+  dev_url: https://github.com/rust-bio/rust-bio-tools
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   recipe-maintainers:
     - fxwiegand
     - felixmoelder
diff --git a/recipes/saccharis/meta.yaml b/recipes/saccharis/meta.yaml
index 559c399eb7971..e6ebf9c22151a 100644
--- a/recipes/saccharis/meta.yaml
+++ b/recipes/saccharis/meta.yaml
@@ -1,15 +1,17 @@
-  {% set name = "SACCHARIS" %}
-  {% set version = "2.0.0.dev18" %}
-  {% set build_no = 0 %}
+{% set name = "SACCHARIS" %}
+  {% set version = "2.0.0.dev21" %}
+  {% set build_no = 2 %}
+  {% set hash = "BA68CAB1070A11D5D4F2335CB770E1603ED54E1FB4B52A31DB4CA9A6CBBD6F7E" %}
+
 
 package:
   name: "{{ name|lower }}"
   version: "{{ version }}"
 
 source:
-  url: "https://github.com/saccharis/SACCHARIS_2/archive/refs/tags/v{{ version }}.tar.gz"
-  sha256: 6d3f2818853d812a00c6203cea0b6667b086df846f518591cb5f0469c4dda778
-  
+  url: https://github.com/saccharis/SACCHARIS_2/releases/download/v{{ version }}/saccharis-{{ version }}.tar.gz
+  sha256: {{ hash|lower }}
+
 build:
   noarch: python
   number: {{ build_no }}
@@ -24,6 +26,11 @@ build:
     - saccharis.screen_cazome = saccharis.ScreenUserFile:cli_cazome
     - saccharis.show_family_categories = saccharis.utils.FamilyCategories:show_categories
     - saccharis-gui = saccharis.gui.PipelineGUI:main
+    - saccharis.config = saccharis.utils.AdvancedConfig:cli_config
+    - saccharis.update_db = saccharis.ExtractAndPruneCAZymes:update_hmms
+
+  run_exports:
+    - {{ pin_subpackage("saccharis", max_pin="x.x") }}
 
 requirements:
   build:
@@ -34,11 +41,13 @@ requirements:
   run:
     - beautifulsoup4 >=4.11.1
     - biopython >=1.79
-    - dbcan >=3.0.6, < 4 # [not win]
+    - blast >=2.*
+    - dbcan >=3.0.6, < 4
     - diamond >=2.0.15 # [not win]
     - fasttree >=2.1.11 # [not win]
     - hmmer >=3.3 # [not win]
     - lxml >=4.9.0
+    - ncbi-datasets-pylib >=14.*
     - modeltest-ng >=0.1.7  # [not win]
     - muscle >=3.8  # [not win]
     - psutil
@@ -46,6 +55,7 @@ requirements:
     - python-dotenv >=0.20.0
     - python-wget >=3.2
     - raxml >=8.2.12 # [not win]
+    - raxml-ng >=1.2 # [not win]
     - requests >=2.28.0
     - pyqt >=5,<6
     - pyqt5-sip >=12.11
@@ -62,16 +72,16 @@ app:
 
 test:
   commands:
-      #future todo: pipe test output to null for these tests, per https://bioconda.github.io/contributor/guidelines.html#tests
-    - saccharis -v
-#   below tests write files to disk, which breaks bioconda automated test harness because it lacks write permissions
+    # pipe test output to null for these tests, per https://bioconda.github.io/contributor/guidelines.html#tests
+    - saccharis -v > /dev/null
+    - saccharis.show_family_categories > /dev/null
+#    below tests need to be commented out for successful build on bioconda because there is no file write permission
 #    - saccharis.make_family_files
-#    - saccharis.show_family_categories
 
 about:
   home: https://github.com/saccharis/SACCHARIS_2
   dev_url: https://github.com/saccharis/SACCHARIS_2
-  description: Bioinformatics pipeline to automate phylogenetic analysis of CAZyme families in FASTA sequences
+  description: Bioinformatics pipeline to automate phylogenetic analysis of CAZyme families in FASTA sequences via creation of phylogenetic trees.
   license: GPL v3
   license_file: LICENSE
-  summary: A CAZyme discovery tool.
+  summary: A CAZyme discovery tool. Easily create phylogenetic trees from FASTA files and CAZyme families.
diff --git a/recipes/sage-proteomics/meta.yaml b/recipes/sage-proteomics/meta.yaml
index 9260cef0fc7ee..2e26967970fd3 100644
--- a/recipes/sage-proteomics/meta.yaml
+++ b/recipes/sage-proteomics/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "sage-proteomics" %}
-{% set version = "0.13.4" %}
-{% set sha256 = "eabf4a1f9f6ce7e8352d67d5846ba9fa8789bb4641c8541a6d9b3dbd13f2c8a0" %}
+{% set version = "0.14.7" %}
+{% set sha256 = "894b59429a67dc22592fc65fca547ee6d67f8bada71d09f7c1a81524b65fe6da" %}
 
 package:
   name: {{ name }}
@@ -8,6 +8,8 @@ package:
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage('sage-proteomics', max_pin="x") }}
 
 source:
   url: https://github.com/lazear/sage/archive/refs/tags/v{{ version }}.tar.gz
@@ -26,6 +28,7 @@ test:
 about:
   home: https://github.com/lazear/sage
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   doc_url: https://lazear.github.io/sage/
   dev_url: https://github.com/lazear/sage
diff --git a/recipes/salmon/build.sh b/recipes/salmon/build.sh
index 027cadd4c97e5..ec521e821cd85 100644
--- a/recipes/salmon/build.sh
+++ b/recipes/salmon/build.sh
@@ -8,6 +8,7 @@ mkdir -p build
 cd build
 cmake -DCMAKE_BUILD_TYPE=RELEASE \
       -DCONDA_BUILD=TRUE \
+      -DLIBSTADEN_LDFLAGS=-L$PREFIX/lib \
       -DBoost_NO_BOOST_CMAKE=ON \
       -DCMAKE_OSX_DEPLOYMENT_TARGET=10.11 \
       -DCMAKE_INSTALL_PREFIX:PATH=$PREFIX \
diff --git a/recipes/salmon/meta.yaml b/recipes/salmon/meta.yaml
index f5f3ede9e394b..91a5f42d76e10 100644
--- a/recipes/salmon/meta.yaml
+++ b/recipes/salmon/meta.yaml
@@ -1,4 +1,4 @@
-{% set version="1.10.2" %}
+{% set version="1.10.3" %}
 
 package:
   name: salmon
@@ -6,10 +6,12 @@ package:
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage("salmon", max_pin="x.x") }}
 
 source:
   url: https://github.com/COMBINE-lab/salmon/archive/v{{ version }}.tar.gz
-  sha256: 976989182160fef3afb4429ee8b85d8dd39ed6ca212bb14d6a65cde0e985fb98
+  sha256: a053fba63598efc4ade3684aa2c8e8e2294186927d4fcdf1041c36edc2aa0871
 
 
 requirements:
@@ -17,6 +19,8 @@ requirements:
     - autoconf
     - cmake
     - make
+    - bzip2
+    - zlib
     - {{ compiler('cxx') }}
     - {{ compiler('c') }}
   host:
@@ -44,6 +48,8 @@ about:
   summary: Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   recipe-maintainers:
     - rob-p
     - k3yavi
diff --git a/recipes/salty/meta.yaml b/recipes/salty/meta.yaml
index baee1a01d7b94..1b9e8d2ffcbfa 100644
--- a/recipes/salty/meta.yaml
+++ b/recipes/salty/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.0.5" %}
+{% set version = "1.0.6" %}
 {% set name = "salty" %}
 
 package:
@@ -7,12 +7,14 @@ package:
 
 source:
   url: https://github.com/LanLab/{{ name }}/archive/v{{ version }}.tar.gz
-  sha256: 85cc90e93fdce30685a9c0c2fecc0d3079c0d7903c02eba9096a1b73e2c4fbd6
+  sha256: 85c7fd21665606e9e31807c36a6e6edf5dd77a41a3929eb10c94291cede6ff4b
 
 build:
   noarch: python
-  number: 1
+  number: 0
   script: {{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   host:
@@ -21,7 +23,7 @@ requirements:
   run:
     - python >=3.7
     - kma >=1.4.9
-    - pandas >=1.5.0
+    - pandas >=2.0
     - mlst >=2.23.0
 
 test:
diff --git a/recipes/sam-algorithm/meta.yaml b/recipes/sam-algorithm/meta.yaml
index 604a4de67a60d..90bfcd486c2e5 100644
--- a/recipes/sam-algorithm/meta.yaml
+++ b/recipes/sam-algorithm/meta.yaml
@@ -1,44 +1,51 @@
 {% set name = "sam-algorithm" %}
-{% set version = "0.9.0" %}
+{% set version = "1.0.2" %}
+{% set sha256 = "971793c46af94472729f917d060619d76d167b1fe4fe4625aa0f2bb908baad51" %}
 
 package:
-  name: "{{ name|lower }}"
-  version: "{{ version }}"
+  name: {{ name|lower }}
+  version: {{ version }}
 
 source:
-  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: "85ad4d6eefabd54183278d7d734aa82ae8a128d54cadb53808a41bf8f638d62d"
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/sam-algorithm-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
 
 build:
   number: 0
   noarch: python
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  script: {{ PYTHON }} -m pip install . --no-deps -vvv
+  run_exports:
+    - {{ pin_subpackage('sam-algorithm', max_pin="x") }}
 
 requirements:
   host:
-    - python>=3.7
+    - python >=3.6
+    - pip
   run:
-    - anndata >=0.7.4
-    - dill
-    - h5py <=2.10.0
-    - numba >=0.50.1
+    - python >=3.6
     - numpy >=1.19.0
-    - packaging
-    - pandas ==1.0.0
-    - python>=3.7
-    - scikit-learn >=0.23.1
     - scipy >=1.3.1
+    - pandas >1.0.0
+    - scikit-learn >=0.23.1
+    - packaging >=0.20.0
+    - numba >=0.50.1
     - umap-learn >=0.4.6
+    - dill
+    - anndata >=0.7.4
+    - h5py
+    - harmonypy
+    - hnswlib
 
 test:
   imports:
     - samalg
 
 about:
-  home: "https://github.com/atarashansky/self-assembling-manifold"
-  license: "MIT"
-  license_family: "MIT"
-  summary: "The Self-Assembling-Manifold algorithm"
+  home: https://github.com/atarashansky/self-assembling-manifold
+  summary: The Self-Assembling-Manifold algorithm
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE.txt
 
 extra:
   recipe-maintainers:
diff --git a/recipes/sam2lca/meta.yaml b/recipes/sam2lca/meta.yaml
index 721c30ad9f321..1a23c3b4a533d 100644
--- a/recipes/sam2lca/meta.yaml
+++ b/recipes/sam2lca/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "sam2lca" %}
-{% set version = "1.1.3" %}
+{% set version = "1.1.4" %}
 
 package:
   name: {{ name|lower }}
@@ -7,7 +7,7 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/sam2lca-{{ version }}.tar.gz
-  sha256: d1789f06a0ea15949e45b9cb61ad32249663481750d5082d523d615b5d0e8c5f
+  sha256: c1d26f67458c2ad3ff8541b4ecf672c97c81fd65c91092beefab10cdea6f945b
 
 build:
   entry_points:
@@ -15,6 +15,8 @@ build:
   noarch: python
   script: {{ PYTHON }} -m pip install . -vv
   number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/sambamba/0001-fix-osx-compile.patch b/recipes/sambamba/0001-fix-osx-compile.patch
new file mode 100644
index 0000000000000..51886baa1f14b
--- /dev/null
+++ b/recipes/sambamba/0001-fix-osx-compile.patch
@@ -0,0 +1,24 @@
+--- a/Makefile
++++ b/Makefile
+@@ -32,16 +32,18 @@
+ D_COMPILER=ldc2
+ CC=gcc
+
++BIOD_PATH=./BioD:./BioD/contrib/msgpack-d/src
++DFLAGS      = -wi -I. -I$(BIOD_PATH) -g -J.
++LDFLAGS     =
++
+ UNAME_S := $(shell uname -s)
+ ifeq ($(UNAME_S),Darwin)
+   SYS = OSX
+ else
+   SYS = LINUX
++  LDFLAGS += -L=-flto=full
+ endif
+
+-BIOD_PATH=./BioD:./BioD/contrib/msgpack-d/src
+-DFLAGS      = -wi -I. -I$(BIOD_PATH) -g -J.
+-LDFLAGS     = -L=-flto=full
+
+ # DLIBS       = $(LIBRARY_PATH)/libphobos2-ldc.a $(LIBRARY_PATH)/libdruntime-ldc.a
+ # DLIBS_DEBUG = $(LIBRARY_PATH)/libphobos2-ldc-debug.a $(LIBRARY_PATH)/libdruntime-ldc-debug.a
diff --git a/recipes/sambamba/build.sh b/recipes/sambamba/build.sh
index af31e1ce534cb..bfde907c08111 100644
--- a/recipes/sambamba/build.sh
+++ b/recipes/sambamba/build.sh
@@ -1,17 +1,13 @@
 #!/bin/bash
-set -eux
 
 export C_INCLUDE_PATH=${PREFIX}/include
 export LIBRARY_PATH=${PREFIX}/lib
 
-if [ $(uname) == "Darwin" ]; then
-    export LDFLAGS="-headerpad_max_install_names ${LDFLAGS}"
-fi
+# Running `make check` recompiles as an unoptimised binary so must be done prior to release compile
+make check CC=${CC}
 
-sed -e "/^CC=/d" Makefile > Makefile.new
-mv Makefile.new Makefile
-make CC=${CC} LIBRARY_PATH=${PREFIX}/lib prefix=${PREFIX}
-make test CC=${CC}
+make release CC=${CC} LIBRARY_PATH=${PREFIX}/lib
 make install prefix=${PREFIX}
+
 # The binaries are versioned for some reason
 mv ${PREFIX}/bin/sambamba-* ${PREFIX}/bin/sambamba
diff --git a/recipes/sambamba/meta.yaml b/recipes/sambamba/meta.yaml
index ef2f075db101e..483f6ea0d23ce 100644
--- a/recipes/sambamba/meta.yaml
+++ b/recipes/sambamba/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "sambamba" %}
-{% set version = "1.0" %}
-{% set sha256 = "4181ae6bcd2852d7264cc8858efa9fe66d0cd29e90b9a28102d29b526ee056bc" %}
+{% set version = "1.0.1" %}
+{% set sha256 = "955a51a00be9122aa9b0c27796874bfdda85de58aa0181148ef63548ea5192b0" %}
 package:
   name: {{ name }}
   version: {{ version }}
@@ -8,9 +8,13 @@ package:
 source:
   url: https://github.com/biod/sambamba/archive/refs/tags/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
+  patches:
+    - 0001-fix-osx-compile.patch
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
 
 requirements:
   build:
diff --git a/recipes/samblaster/build.sh b/recipes/samblaster/build.sh
index 6c134704ab89c..e583b50b8c314 100644
--- a/recipes/samblaster/build.sh
+++ b/recipes/samblaster/build.sh
@@ -3,5 +3,5 @@
 BIN=$PREFIX/bin
 mkdir -p $BIN
 sed -i.bak 's/CPPFLAGS = /CPPFLAGS = $(CXXFLAGS) /' Makefile
-make CPP=$CXX
+make CPP=$CXX -j${CPU_COUNT}
 cp samblaster $BIN
diff --git a/recipes/samblaster/meta.yaml b/recipes/samblaster/meta.yaml
index 25b42d4cf8568..016234e899fb5 100644
--- a/recipes/samblaster/meta.yaml
+++ b/recipes/samblaster/meta.yaml
@@ -1,5 +1,7 @@
 build:
-  number: 4
+  number: 5
+  run_exports:
+    - {{ pin_subpackage('samblaster', max_pin='x.x') }}
 
 # Started based on: https://anaconda.org/Judowill/samblaster
 
@@ -25,3 +27,7 @@ about:
   home: https://github.com/GregoryFaust/samblaster
   license: MIT
   summary: Mark duplicates in and extract discordant and split reads from SAM files.
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/samestr/meta.yaml b/recipes/samestr/meta.yaml
index 36690b13adb95..54f65bf516a7c 100644
--- a/recipes/samestr/meta.yaml
+++ b/recipes/samestr/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "samestr" %}
-{% set version = "1.2023.4" %}
+{% set version = "1.2024.2.post1" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 268b26ea7e7225373ea35ff75f30e4f0f8840946a92469b6bf51a7433d0b7d2c
+  sha256: d03c5f1fd89fd018409bcf332c3a95e752aca9fb47b88c617fad702581630bdd
 
 build:
   number: 0
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('samestr', max_pin=None) }}
 
 requirements:
   host:
@@ -47,7 +49,7 @@ test:
 
 about:
   home: "https://github.com/danielpodlesny/samestr/"
-  license: "GNU Affero General Public License v3"
+  license: "AGPL-3.0-or-later"
   license_family: AGPL
   license_file: LICENSE
   summary: "SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles."
diff --git a/recipes/samsum/meta.yaml b/recipes/samsum/meta.yaml
index 6988988dd4f66..74767cb6d3564 100644
--- a/recipes/samsum/meta.yaml
+++ b/recipes/samsum/meta.yaml
@@ -10,11 +10,13 @@ source:
   sha256: 36b1fc0eaa4da1b7a70d2791357c7547612c9653e4e0ea7db39ba96cdd03ffc5
 
 build:
-  number: 3
+  number: 4
   skip: True  # [py2k]
   entry_points:
     - samsum = samsum.__main__:main
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   build:
@@ -45,5 +47,7 @@ about:
   summary: A light-weight python package for summarizing sequence coverage from SAM and BAM files
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   recipe-maintainers:
     - cmorganl
diff --git a/recipes/samtools/meta.yaml b/recipes/samtools/meta.yaml
index 8170e44d012f7..f098279936380 100644
--- a/recipes/samtools/meta.yaml
+++ b/recipes/samtools/meta.yaml
@@ -1,15 +1,17 @@
-{% set version = "1.17" %}
+{% set version = "1.20" %}
 
 package:
   name: samtools
   version: {{ version }}
 
 build:
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("samtools", max_pin="x") }}
 
 source:
   url: https://github.com/samtools/samtools/releases/download/{{ version }}/samtools-{{ version }}.tar.bz2
-  sha256: 3adf390b628219fd6408f14602a4c4aa90e63e18b395dad722ab519438a2a729
+  sha256: c71be865e241613c2ca99679c074f1a0daeb55288af577db945bdabe3eb2cf10
 
 requirements:
   build:
@@ -19,10 +21,6 @@ requirements:
     - htslib
     - ncurses
     - zlib
-  run:
-    - htslib
-    - ncurses
-    - zlib
 
 about:
   home: https://github.com/samtools/samtools
@@ -37,6 +35,8 @@ test:
     - samtools view 'https://example.com' 2>&1 | grep 'fail to read the header' -q
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:samtools
     - usegalaxy-eu:samtools_flagstat
diff --git a/recipes/sanntis/meta.yaml b/recipes/sanntis/meta.yaml
index b9a488388e4a2..72516e12f2345 100644
--- a/recipes/sanntis/meta.yaml
+++ b/recipes/sanntis/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "sanntis" %}
-{% set version = "0.9.3.2" %}
-{% set sha256 = "a9be1e31cf0d5065cb19dc34ff8c99e8661d7b91dc4b8c211c57563efb95a97e" %}
+{% set version = "0.9.3.5" %}
+{% set sha256 = "6e6753afb557fd4c1a5bb63059bfe9ce68bcdaf64a41162494cb5ebbef16ab18" %}
 
 package:
   name: {{ name }}
@@ -16,6 +16,8 @@ build:
   entry_points:
     - sanntis = sanntis._cli:main
   script: "{{ PYTHON }} -m pip install . -vv --no-deps"
+  run_exports:
+    - {{ pin_subpackage('sanntis', max_pin='x.x') }}
 
 requirements:
   host:
diff --git a/recipes/sansa/build.sh b/recipes/sansa/build.sh
index a3f3b721a6495..dc2400afabae2 100644
--- a/recipes/sansa/build.sh
+++ b/recipes/sansa/build.sh
@@ -1,5 +1,3 @@
 #!/bin/sh
 
-make all CXX=$CXX CXXFLAGS="-D__STDC_FORMAT_MACROS -I${PREFIX}/include -L${PREFIX}/lib"
-mkdir -p $PREFIX/bin
-cp src/sansa $PREFIX/bin
+CXXFLAGS="${CXXFLAGS} -D__STDC_FORMAT_MACROS" make CXX="${CXX}" prefix="${PREFIX}" install
diff --git a/recipes/sansa/meta.yaml b/recipes/sansa/meta.yaml
index 0cab341eedf48..50e1fa53b64ec 100644
--- a/recipes/sansa/meta.yaml
+++ b/recipes/sansa/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.0.8" %}
-{% set sha256 = "124abc76cd65d13dbc3f1bc701af266d55e3d58be618f01b772d6d9dd6b185ee" %}
+{% set version = "0.2.1" %}
+{% set sha256 = "f43b088b8339d3ba395adf922d723b074e31f8bf548c9e9039cccace5acc60ee" %}
 
 package:
   name: sansa
@@ -10,18 +10,31 @@ source:
   sha256: '{{ sha256 }}'
 
 build:
-  number: 6
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('sansa', max_pin="x.x") }}
 
 requirements:
   build:
     - make
     - {{ compiler('cxx') }}
+    - autoconf
+    - automake
+    - pkg-config
+    - clangdev
+    - llvm-openmp
   host:
     - boost-cpp
     - htslib
+    - zlib
+    - bzip2
+    - clangdev
+    - llvm-openmp
   run:
     - boost-cpp
     - htslib
+    - zlib
+    - bzip2
 
 test:
   commands:
@@ -29,7 +42,7 @@ test:
 
 about:
   home: https://github.com/dellytools/sansa
-  license: BSD License
+  license: BSD-3-Clause
   license_family: BSD
   license_file: LICENSE
   summary: Structural variant annotation
diff --git a/recipes/sativa/build.sh b/recipes/sativa/build.sh
new file mode 100644
index 0000000000000..9f821444e5974
--- /dev/null
+++ b/recipes/sativa/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+
+export USE_AVX=yes
+export USE_AVX2=yes
+
+make -C raxml
+
+cp -r raxml ${PREFIX}/bin
+cp -r epac ${PREFIX}/bin
+cp *.py ${PREFIX}/bin
+cp sativa.cfg ${PREFIX}/bin
diff --git a/recipes/sativa/gpl_license b/recipes/sativa/gpl_license
new file mode 100644
index 0000000000000..818433ecc0e09
--- /dev/null
+++ b/recipes/sativa/gpl_license
@@ -0,0 +1,674 @@
+                    GNU GENERAL PUBLIC LICENSE
+                       Version 3, 29 June 2007
+
+ Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+                            Preamble
+
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+software and other kinds of works.
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+GNU General Public License for most of our software; it applies also to
+any other work released this way by its authors.  You can apply it to
+your programs, too.
+
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+
+  12. No Surrender of Others' Freedom.
+
+  If conditions are imposed on you (whether by court order, agreement or
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+  13. Use with the GNU Affero General Public License.
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+                     END OF TERMS AND CONDITIONS
+
+            How to Apply These Terms to Your New Programs
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+<http://www.gnu.org/licenses/>.
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+may consider it more useful to permit linking proprietary applications with
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+<http://www.gnu.org/philosophy/why-not-lgpl.html>.
diff --git a/recipes/sativa/meta.yaml b/recipes/sativa/meta.yaml
new file mode 100644
index 0000000000000..7fa6e1aee16b4
--- /dev/null
+++ b/recipes/sativa/meta.yaml
@@ -0,0 +1,44 @@
+{% set name = "sativa" %}
+{% set version = "0.9.3" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/amkozlov/sativa/archive/refs/tags/v{{ version }}.zip
+  sha256: 0d0ae82f0f9608f51301ecadc367f85653fe9954855d9ebbbef8f889eef586b8
+
+build:
+  number: 0
+  skip: true  # [osx]
+  run_exports:
+    - {{ pin_subpackage('sativa', max_pin="x.x") }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('c') }}
+    - python >=3.0.0
+  host:
+    - python >=3.0.0
+  run:
+    - python >=3.0.0
+
+test:
+  files:
+    - sequences.alnfna
+    - taxonomy.tsv
+  commands:
+    - sativa.py -s sequences.alnfna -t taxonomy.tsv -x bac -debug
+
+about:
+   home: https://github.com/amkozlov/sativa
+   license: GPL-3
+   license_family: GPL
+   license_file: gpl_license
+   summary: "SATIVA Semi-Automatic Taxonomy Improvement and Validation Algorithm"
+
+extra:
+   identifiers:
+     - doi:10.1093/nar/gkw396
diff --git a/recipes/sativa/sequences.alnfna b/recipes/sativa/sequences.alnfna
new file mode 100644
index 0000000000000..7e0aa83c9190c
--- /dev/null
+++ b/recipes/sativa/sequences.alnfna
@@ -0,0 +1,230 @@
+>RS_GCF_000019605.1~NC_010482.1
+---GGTTGATCCTGCCGGAGGGAAC-----CCCTATCGGGCTCGCACTAAGCCATGCGAG
+TCTGCTGGGGG-------------------------------------------------
+------------------------------------CCCCTGCCCCTGGCGGCGCACGGC
+TCCGTAATACACGGTCAACCTGTCCTGGGGACCGGGATAA--------------------
+CCTCGGGAAACTGAGGTTAAT---ACCGGATAGGGGTGGATTCCTGGAATGGGTCCACCC
+CTAAAGTAGGCGGGGGGACG-GCC-----CCGCTGAGGCCCCAGGGTGGGACCGTGGCCT
+AT-CAGG----TAGTAGGTGGGGTA---------ACGGCCCACCTAGCCTAAGACGGGTA
+CGGG------CTCTGAGAG-GAGG-AGCCCGGAGATGGGCACTGAGACAAGGGCCCAGGC
+C-CTACGGGGCGCAGCAG--------GCGGGAAACTTCCCCAATG-----CGCGCAAGCG
+TGAGGGAGTGAGCCCGAGTGCCGCCCGCTGAGGG------CGGCTGTTCCCCTGTGTAA-
+--------A-AAG-------CAGGGGGTAGGAAG-GGGAG-------GGTAAGGCTGGTG
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------CCAGCCGCCGCGGTAAAACCAGC---------TCC-CCGA--
+-GGG--GTTCCCACGCATACTGGGCCTAAAGCGTCCGTAGCCGGCCCCGTAAGTCCTCGG
+TT---AAATCCGC--CTGAAGACAGG--CGGACCGCCGAGGAT------A--CTGCGGGG
+C-TAGGGAGC--GGGAGGGGCCGAGGGTATTCCGGGGGGAGCGGTAAAATGCGT------
+------------------------------------------AGATCCCCGGAGGACC--
+-ACCAGTGGCGAAGGCGCTCGGCTGGAACGCGTCCGACGGTGAGGG--------ACGAAA
+GCTGGG-GGAG------------------CAAACCGGATTAGATACCCGGGTAGTCCCAG
+CCGTAAACGATGCCGG---CTAGGTGCCG---GCTGAGG---------TTTCGGCCTCAG
+CCGGTGTCGA---------------------AGCGAAGGCATTAAGCCGGCCGC-CTGAG
+GAGTACAGCCGCAAGGCCGAAA----------CTTAAAGGAATTG-ACGGGGGGGC----
+------------------------------------------------------------
+--------------------------ACCACAAGGGGTGAATGCCTGCGGCTCAATTGGA
+CTCAACGCCGGGAATC-TTACCGGGGGCGACAGCAGGATGAAGGTCAGG-----------
+------------------------------------------------------------
+--------------------------------------CTG-------AA----------
+-------GACCTTACCTGAC----GCGCTGAG--GG-GTGGTGCATGGC---------CG
+TCGCCAGCTCGTGCCGTGAGGTGT--CCTGTTAAGTCAGGC-------AACGAGCGAGAC
+-CCCCGCCCTC-AGTTGCCAGCGGGGCCTT-ACGGCTGG-C-CG-GGCAAACTGGGGGGA
+CTGCCGGCGAAGA---GCCGGAGGAAGGAGGGGGCTACGGCAGGTCAGTATGCCCCTAAT
+C---CCCCGGGCCGCACGCGGGCTGCAATGGGCGGGACA---GCGG---------G-ATG
+CGAC-CCCGAGAGGGGGAGCAAATCCCTGAAACCCGCCCGT-G--GTTGGGATCGAGGGT
+TGCAACTCGCCCTCGTGA-ACCCGGAATCCCTAGTAACCGCGGTTCTCC-ATAC------
+----------------------------CGCGGTGAATACGTCCCTGCCCCTTGTACACA
+CCGCCCGTCAACCCACCCGAGTGGACTTGGGGCGAGGCCCAGCTCAA-------------
+-------------------TGGCTGGGTCGAGCTTTGGGTCCGCGAGGGGGGGTAAGTCG
+TAACAAGGTAGCCGTAG---GGGAACCTGCGGCTGGATCACCTCCC--------------
+------------------------------------------------------------
+-------------------
+>RS_GCF_000092465.1~NC_014205.1
+------------------------------------------------------------
+------------------------------------------------------------
+----------------------AGGTGATCCA----GCCGCAGGTTCCCCTACGGCTACC
+TTGTTACGACTTCTCCCCCCTTGGGAGGGGGGAGTTCGACCTGGCCCCC----CGGGTTT
+CCCCGGGAGACCAGGCCTCAC---TCCCCCCTCCCTCGGGTGGAGCGACGGGCGGTGTGT
+GCAAGGAGCAGGGA--CG---TATTC--ACCGC-GCGATGATGACGCGCGGTTACTAGGG
+ATTCCACGTTCACGAGGG-CGAGTT------------------GCAGCCCTCGATCCCAA
+CTGCGGCGGGGTTTGAGGGATTGCCTCCCCCTTAC-GGGGTCGGATCCCGCTGTCCCCGC
+CATTGTAGCCC---------------GCGTGTAGCCCGGGGGATT-----CGGGGCATGC
+TGAC--------------------------------------------------------
+---------------------------------------------CTGCCGTGGCCCCCT
+CCTTCCTCCGCCTTATACGGCGGCAGTCCCCCTAGTGTG-CCCC-GG--AGCCGGAGCTC
+CGGGTAGCAACTAGGGGCGGGGGT-CTCGCTCGTTGC------------CGGACTTAACC
+GGACACCTCACGG----CACGAGCTGGCGACGGCCATGCACCTCCTCTCAGCGCG-----
+-TCGGGCAA---------------------------------------------------
+------------------------------------------------------------
+---------------------------GGCCGTTAGCCTGGCCGTCATC-CTGCTG----
+------------------------------------------------------------
+------------------------------------------------------------
+--------------------------TCGCCCCCGGTGAGG------------TTCCCGG
+CGTTGACTCCAATTAAACCG--CAGGCTCCACC---CCTTGTGGTGCTCCCCCGC-----
+-------------------CAATTCCTTTAAGTTTCAGCCTTGCGGCCGTACTCCCCAG-
+-GCGGCGGGCTTAACGGCTTCCCTGCGGCACTGGGCGGGCTCT-AA-G-CCCGCCCAACA
+CCTAGCCCGCATCGT---------------TTACAGCCGGGACTACCCGGGTATCTAATC
+CGGTTCGCTCCCCC------------------GGCTTTCGCCCCTCACCGTCG-------
+----------------GGCGCGTTCCAGCCGAGCGCCTTCGCCACTGGTGGTCCTCCCGG
+GATTATAGGATTTCGCCCCTAC-----------C------------------CCGGGAGT
+ACCCTCGGCCTCTCCCGCCCCCTAGCCTGGCAGTTTCCCCTCCAGTC-C-CCGGGTTGAG
+CCCGGGGATTTAGGAGGGGACTTG-CCAGGCCGGCTACGG------GCGCTTTAGGCCCA
+ATAATCGTCCCGA----CCACTCGCGGGGCTGGTATTACCGCGGCGGCTGACACCAGTCT
+TGCCCCCCGCTTATTCCCCC----------------------------------------
+------------------------------------------------------------
+-----GCCTTCTTACAGCGG-GGAAAAGCCCC------CT-AATTAGGGGGCACTCGGGG
+TGACCCCGTCACGGTTGCCCGCAT--TGCGGAGGTTTCGCGCCTGGTGCACCCCGTAGGG
+CCTGGGCCCTTGTCT--CAGTGCCCATCTG----GGGGC-----TCCCGCTCTCA-CGGC
+CCCTACCCGTTATCGGCTTGGCGGGCCGTTACCCCGCCAACTACCTG-ATGGGCCGCAGC
+CCCATCCTCGGGCTGCGCGGCGGCGATAACCCCCGCCGCA--CCC--TTTCGGGGAGGAA
+CCCTTCCAGGCGTCCT---CCCCTATGG-GGGATTAGCACC-A--GTTTCCC---GG-TG
+TTATCCCCCTCCCGAGGGTAGGTTAGCCACGTGTTACTCAGCCGTCCGCCACGCTCCGCA
+GCGG----------CGGAGCGTACGACTCCCATGGCTTAGCCCCACCCCGATAGCGGTCG
+GGTCCGGCAGGATCAACCGGAGTT------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------------
+>RS_GCF_000970205.1~NZ_CP009512.1-#2
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------GAGGTGATCCA----GCCGCAGATTCCCCTACGGCTACC
+TTGTTACGACTTAACCCCCCTTGCAAAGCACAGGTTCGAACACGGCAC-G----------
+----A-AGTCCGTGCCCTCAC---CCATACCTCACTCGGGTGGTTTGACGGGCGGTGTGT
+GCAAGGAGCAGGGA--CG---TATTC--ACCGC-GCTATATTGAAACGCGATTACTACGG
+ATTCCAGCTTCACGA-GGGCGAGTT------------------ACAGCCCTCGATCCGAA
+CTACGAATGGGTTTGTGAGATTAC-CAGCCCTTTTCAGGGGAGGGACCCATTGTCCCATC
+CATTGTAGCCC---------------GCGTGTAGCCCGGGAGATT-----CGGGGCATAC
+TGAC--------------------------------------------------------
+---------------------------------------------CTACCGTGGCCCGCA
+CCTTCCTCCGATTTAACATCGGCGGTCCCCACAGAGTACCCATCGTCCC----GGAGGAC
+ATGCTGGTAACAGTGGGCACGGGT-CTCGCTCGTTGC------------CTGACTTAACA
+GGATGCTTCACAG----TACGAACTGGCGACGGCCATGCACCTCCTCTCAGCGAT-----
+-TCAGGCAA---------------------------------------------------
+------------------------------------------------------------
+---------------------------AGTCTTCAGCTTGGCCTACATA-TTGCTG----
+------------------------------------------------------------
+------------------------------------------------------------
+--------------------------TCGCCCCCGGTGAGT------------TGTCCGG
+CGTTGAGTCCAATTAAACCG--CAGGCTCCACC---CGTTGTTGTGCTCCCCCGC-----
+-------------------CAATTCCTTTAAGTTTCAGCCTTGCGGCCGTACTTCCCAG-
+-GTGGCTCGCTTCACGGCTTCCCTGCGGCACCAGACACGGTCG-CG-C-CATGCCTGACA
+CCTAGCGAGCATCGT---------------TTACGGCTGGGACTACCCGGGTATCTAATC
+CGGTTCGTGCCCCC------------------AGCTTTCGTCCCTCACCGTCG-------
+----------------AACCCGTTCTGGTAAGACGCCTTCGCCACAGGTGGTCCCACAGG
+GATTACAAGATTTCACTCCTAC-----------C------------------CCTGTAGT
+ACCTCTTACCTCTCCCGGTTCCAAGTCTGGCAGTATCCCCCGAAAGCCT-AATAGTTGAG
+CTATCAGATTTCCCGGAGGACTGA-CCAAACCGGCTACGG------ACCCTTTAGACCCA
+ATAATCACGATCA----CCACTCGGGCCGCCGGTGTTACCGCGGCGGCTGGCACCGGTCT
+TGCCCGGCCCTTGCTAACGG----------------------------------------
+------------------------------------------------------------
+-----ATGTATTTTACACATCCGGACAGCCA------GCATATGATGCTGGCACTCGGTG
+TCCCCTTATCACGGTTTCCCGCAT--TGTAAAGTTTTCGCGCCTGCTGCGCCCCGTAGGG
+CCTGGATTCATGTCT--CAGAATCCATCTC----CGGGC-----TCTTGCTCTCA-CAAC
+CCGTACCCGTCGCTGGCTAGTAGGTACATTACACCCACTACTAC-CTGATAGGCCGCAGA
+CCCATCCTTGGGCAGACGAATCCTT-------------------T--T--GACGCATAAA
+GCATTCCAGCAAATAT---GCGTTATCC-GGAATTATCCCC-A--GTTTCCC---GG-GG
+TTATGCCGGTCCCAAGGGCAGGTTATCCACGTGTTACTGAGCAGTACGCCATGTATT---
+---------------GCTACATATGACTCGCATGGCTTAGGCGAACACCGATAGCAGTAA
+CCTCTGGCAGGATCAACCAGAATT------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------------
+>RS_GCF_000302455.1~NZ_AMPO01000020.1
+-CCGTTTGATCCTGGCGGAGGCCAC-----TGCTATTGGGTTTCGATTAAGCCATGCAAG
+TCGTACGATCCT------------------------------------------------
+-----------------------------------TTC----GGGGTCGTGGCATACGGC
+TCAGTAACACGTGGATAACCTACCCTTAGGACTGGGATAA--------------------
+CCCCGGGAAACTGGGGACAAT---ACCGGATATGTAGAGTTGCCTGGAATTGGTACTCTA
+TTGAAA-------------------T-GTATTCGTGCGCCTAAGGATGGATCTGCGGCAG
+AT-TAGG----TAGTTGGCGGGGTA---------AATGCCCACCAAGCCAGTAATCTGTA
+CGGG------TTGTGAGAG-CAAG-AGCCCGGAGATGGAACCTGAGACAAGGTTCCAGGC
+C-CTACGGGGCGCAGCAG--------GCGCGAAACCTCCGCAATG-----CACGAAAGTG
+CGACGGGGGAAACCCAAGTGCCACTCTTAACG--GG----GTGGCTTTTCTTAAGTGTA-
+--------AAAAG-------CTTTTGGAATAAGA-GCTGG-------GC-AAGACCGGTG
+C-----------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------------CAGCCGCCGCGGTAACACCGGC---------AGC-TCAA--
+-GTG--GTGGCCATTTTTATTGGGCCTAAAGCGTTCGTAGCCGGTTTGATAAGTCTCTGG
+TG---AAATCTCA--CGGCTTAACCGTGAGAATTGCTGGAGAT------A--CTATTAGG
+C-TTGAGGCC--GGGAGAGGTTAGCGGTACTCCCAGGGTAGGGGTGAAATCCTA------
+------------------------------------------TAATCCTGGGAGGACC--
+-ACCTGTGGCGAAGGCGGCTAACTGGAACGGACCTGACGGTGAGTA--------ACGAAA
+GCCAGG-GGCG------------------CGAACCGGATTAGATACCCGGGTAGTCCTGG
+CCGTAAACGATGTGGA---CTTGGTGTTG---GGATGGC---------------------
+------------------------------------------------------------
+---------------------------------TCCGAGCTGCCC-CAGTGCCGAAGGGA
+AGCTGTTAAGTCCACC-------GCCTGGGAAGTACG-GTCGCAAGACTGAAACTTAAAG
+G------AATTGGCGGGGGAG----CACCACAACGCGTGGAGCCT-GCGGTTTAATTGGA
+TTCAACGCCGGACATC-TCACCAGGGGCGACAGCAGAATGATAGCCAGG-----------
+------------------------------------------------------------
+--------------------------------------TTG-------AT----------
+-------GACCTTGCTTGAC----AAGCTGAG--AG-GAGGTGCATGGC---------CG
+CCGTCAGCTCGTACCGTGAGGCGT--CCTGTTAAGTCAGGC-------AACGAGCGAGAC
+-CCACGCCCTT-AGTTACCAGCGGATCCTT-T--GGGAT-G-CCGGGCACACTAAGGGGA
+CCGCCAGTGATAA---ACTGGAGGAAGGAGTGGACGACGGTAGGTCCGTATGCCCCGAAT
+C---CCCTGGGCTACACGCGGGCTACAATGGCTAGGACA---ATGG---------G-TTC
+CGACACTGAA-AAGTGAAGGTAATCTCCTAAACCTAGCCTT-A--GTTCGGATTGAGGGC
+TGTAACTCGCCCTCATGA-AGCTGGAATGCGTAGTAATCGCGTGTCATA-ACCG------
+----------------------------CGCGGTGAATACGTCCCTGCTCCTTGCACACA
+CCGCCCGTCACGCCACCCAAAAAGGGTTTGGATGAGGCCATAGTCTTT------------
+--G--------------TTGGTTATGGTCGAATCTGGGTTCTTTGAGGAGGGCGAAGTCG
+TAACAAGGTAGCCGTAG---GGGAACCTGCGGCTGGATCACCTCCTT-------------
+------------------------------------------------------------
+-------------------
+>RS_GCF_000993805.1~NZ_CP009961.1
+TCCGGTTGATCCTGCCGGACCCGAC-----TGCTATCAGGGTGGGGCTAACCCATGGAAG
+TCTAGGAGCCGGG-----------------------------------------------
+---------------------------------GC--TACGGCCGGCTCCGGCGGACGGC
+TCAGTAGCACGTGGCTAACCTACCCTCGGGAGGGGGATAA--------------------
+CCCCGGGAAACTGGGGCTAAT---CCCCCATAGGCGCAGACTCCTGGAATGGGTCCGCGC
+CGAAAAGGCTGCAACGCCAT-GCCCG---TTGCAGCCGCCCGAGGATGGGGCTGCGCCCC
+AT-CAGG----TAGTTGGCGGGGTA---------ACGGCCCGCCAAGCCGATAACGGGTG
+GGGG------CCGTGAGAG-CGGG-AGCCCCGAGATGGGCACTGAGACAAGGGCCCAGGC
+C-CTACGGGGCGCACCAG--------GGGCGAAACTTCCGCAATG-----CGGGAAACCG
+TGACGGAGCCACCCTGAGTGCCACCCGATGAGGG------TGGCTTTTGCCCGGTCTAA-
+--------A-AAG-------CCGGGCGAATAAGC-GGGG--------GGCAAGCCTGGTG
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------TCAGCCGCCGCGGTAATACCAGC---------CCC-GCGA--
+-GTG--GTCGGGACGATTATTGGGCCTAAAGCGTCCGTAGCCGGCCCGGCAAGTCCCCCT
+TT---AAAGCCCA--CGGCTCAACCG--TGGGAGCGGGGGGAT------A--CTGTCGGG
+C-TAGGGGGC--GGGAGAGGCCGGGGGTACTCCTGGGGTAGGGGCGAAATCCTA------
+------------------------------------------TAATCCCAGGAGGACC--
+-ACCAGTGGCGAAGGCGCCCGGCTGGAACGCGCCCGACGGTGAGGG--------ACGAAA
+GCTGGG-GGAG------------------CAAAGGGGATTAGATACCCCCGTAGTCCCAG
+CTGTAAACGATGCGGG---CTAGGTGTTG---GGTGGG----------CCTCGAGCCCGC
+CCAGTGTCGT---------------------AGGGAAGCCGTTAAGCCCGCCGC-CTGGG
+GAGTACGGCCGCAAGGCTGAAA----------CTTAAAGGAATTG-GCGGGGGAGC----
+------------------------------------------------------------
+--------------------------ACCACAAGGGGTGAAGCTT-GCGGTTTAATTGGA
+GTCAACGCCGGAAACC-TCACCGGGGGCGACAGCAGGATGAAGGCCAGG-----------
+------------------------------------------------------------
+--------------------------------------CTA-------AC----------
+-------GACCTTGCCAGAC----GAGCTGAG--AG-GAGGTGCATGGC---------CG
+TCGCCGGCTCGTGCCGTGAGGTGT--CCTGTTAAGTCAGGG-------AACGAGCGAGAC
+-CCCCGCCCCT-AGTTGCAACCCAGCCTTT-CGGGGCTG-G-GG--CACTCTAGGGGGAC
+TGCCGGCGA-TAA---GCCGGAGGAAGGTGGGGGCTACGGCAGGTCAGTATGCCCCGAAA
+C---CCCCGGGCTACACGCGAGCTGCAATGGCGGGGACA---GCGG---------G-CTC
+CG-ACCCCGAAAGGGGAAGGAAATCCCGTAAACCCCGCCTC-A--GTAGGAATCGAGGGC
+TGCAACTCGCCCTCGTGA-ACGTGGAATCCCTAGTAACCGCGTGTCACC-AACG------
+----------------------------CGCGGTGAATACGTCCCTGCTCCTTGCACACA
+CCGCCCGTCGCTCCACCCGAGGGAGGCCCAGGTGAGGCCTCTCGCCGAAAG---------
+-------------------GTGGGAGGTCGAATCTGGGCCTCCCAAGGGGGGAGAAGTCG
+TAACAAGGTGGCCGTAG---GGGAACCTGCGGCCGGATCACCTCCTT-------------
+------------------------------------------------------------
+-------------------
diff --git a/recipes/sativa/taxonomy.tsv b/recipes/sativa/taxonomy.tsv
new file mode 100644
index 0000000000000..349a7c83c9d8d
--- /dev/null
+++ b/recipes/sativa/taxonomy.tsv
@@ -0,0 +1,5 @@
+RS_GCF_000019605.1~NC_010482.1	d__Archaea;p__Crenarchaeota;c__Korarchaeia;o__Korarchaeales;f__Korarchaeaceae;g__Korarchaeum;s__Korarchaeum
+RS_GCF_000092465.1~NC_014205.1	d__Archaea;p__Crenarchaeota;c__Thermoprotei;o__Desulfurococcales;f__Desulfurococcaceae;g__Staphylothermus;s__Staphylothermus
+RS_GCF_000970205.1~NZ_CP009512.1-#2	d__Archaea;p__Halobacterota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanosarcina;s__Methanosarcina
+RS_GCF_000302455.1~NZ_AMPO01000020.1	d__Archaea;p__Euryarchaeota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobacterium;s__Methanobacterium
+RS_GCF_000993805.1~NZ_CP009961.1	d__Archaea;p__Crenarchaeota;c__Thermoprotei;o__Thermofilales;f__Thermofilaceae;g__Thermofilum_A;s__Thermofilum_A
diff --git a/recipes/savana/meta.yaml b/recipes/savana/meta.yaml
index 2f624ca8531c4..346e21295480e 100644
--- a/recipes/savana/meta.yaml
+++ b/recipes/savana/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "savana" %}
-{% set version = "0.2.3" %}
+{% set version = "1.0.5" %}
 
 package:
   name: "{{ name }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://github.com/cortes-ciriano-lab/{{ name }}/archive/{{ version }}.tar.gz"
-  sha256: 850f9e56da180aafbe183f42d2b473042f17c0e15cf60ac183a67e84397e4d38
+  sha256: 987cf91c355f98e45b29fbca32d7766284eea98d63333ed34f60885d8234510e
 
 build:
   number: 0
@@ -16,6 +16,8 @@ build:
     - "{{ PYTHON }} -m pip install . -vv"
   entry_points:
     - savana=savana.savana:main
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   build:
@@ -23,12 +25,20 @@ requirements:
   run:
     - python >=3.9
     - pybedtools >=0.9.0
-    - pysam >=0.16.0
+    - pysam >=0.20.0
+    - cyvcf2 >=0.30.16
+    - scikit-learn >=1.2.2,<1.3.0
+    - pandas >=2.0.0
+    - matplotlib-base >=3.7.1
 
 test:
   commands:
+    - savana --version
     - savana --help
-    - savana-validation --help
+    - savana run --help
+    - savana classify --help
+    - savana evaluate --help
+    - savana train --help
 
 about:
   home: "https://github.com/cortes-ciriano-lab/{{ name }}"
diff --git a/recipes/scalpel/build.sh b/recipes/scalpel/build.sh
index 1c52ccd2002fb..4c1f37cad4b23 100644
--- a/recipes/scalpel/build.sh
+++ b/recipes/scalpel/build.sh
@@ -26,8 +26,8 @@ chmod 0755 FindVariants.pl
 chmod 0755 FindSomatic.pl
 
 ls -lh $BUILD_PREFIX/include/bamtools
-make INCLUDES="-I$BUILD_PREFIX/include/bamtools -L $BUILD_PREFIX/lib" Microassembler
-make INCLUDES="-I$BUILD_PREFIX/include/bamtools -L $BUILD_PREFIX/lib"
+make INCLUDES="-I$BUILD_PREFIX/include/bamtools -L $BUILD_PREFIX/lib" -j ${CPU_COUNT} Microassembler
+make INCLUDES="-I$BUILD_PREFIX/include/bamtools -L $BUILD_PREFIX/lib" -j ${CPU_COUNT}
 
 outdir=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
 mkdir -p $outdir
diff --git a/recipes/scalpel/conda_build_config.yaml b/recipes/scalpel/conda_build_config.yaml
new file mode 100644
index 0000000000000..e8d152f33c433
--- /dev/null
+++ b/recipes/scalpel/conda_build_config.yaml
@@ -0,0 +1,2 @@
+bamtools:
+  - "2.5.2" # [linux and aarch64]
\ No newline at end of file
diff --git a/recipes/scalpel/meta.yaml b/recipes/scalpel/meta.yaml
index 2cf4fd755e78c..e1fc9d05ac723 100644
--- a/recipes/scalpel/meta.yaml
+++ b/recipes/scalpel/meta.yaml
@@ -1,14 +1,19 @@
+{% set name = "scalpel" %}
+{% set version = "0.5.4" %}
+
 package:
-  name: scalpel
-  version: '0.5.4'
+  name: {{ name }}
+  version: {{ version }}
 
 source:
-  url: http://downloads.sourceforge.net/project/scalpel/scalpel-0.5.4.tar.gz
+  url: http://downloads.sourceforge.net/project/{{ name }}/{{ name }}-{{ version }}.tar.gz
   sha256: 506f731b3886def158c15fd8b74fa98390f304a507d2040972e6b09ddefac8f0
 
 build:
-  number: 5
+  number: 6
   skip: True # [osx]
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   build:
@@ -30,3 +35,7 @@ about:
   home: http://scalpel.sourceforge.net/
   license: MIT
   summary: Sensitive detection of INDELs (INsertions and DELetions)
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/scanorama/meta.yaml b/recipes/scanorama/meta.yaml
index bde4076c536ed..f374f447dea3e 100644
--- a/recipes/scanorama/meta.yaml
+++ b/recipes/scanorama/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "scanorama" %}
-{% set version = "1.7.3" %}
+{% set version = "1.7.4" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,17 +7,18 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: e1d1cdd6855b3a302f6e9e3160442a9998113e5118ac48c71bf8a21760a657b7
+  sha256: 67de100e63abc3028c7780d3a217e43e920a5781230bc6b6a51349d4605e005c
 
 build:
   number: 0
   noarch: python
-  script: "{{ PYTHON }} -m pip install --no-deps --ignore-installed -vv ."
+  script: "{{ PYTHON }} -m pip install --no-deps --no-build-isolation -vvv ."
+  run_exports:
+    - {{ pin_subpackage('scanorama', max_pin="x") }}
 
 requirements:
   host:
     - python >=3.6
-    - setuptools
     - pip
   run:
     - python >=3.6
@@ -37,6 +38,8 @@ test:
 about:
   home: https://github.com/brianhie/scanorama/
   license: MIT
+  license_family: MIT
+  license_file: LICENSE
   summary: Panoramic stitching of heterogeneous single-cell transcriptomic data
 
 extra:
diff --git a/recipes/scanpy-scripts/meta.yaml b/recipes/scanpy-scripts/meta.yaml
index 5428c9ec3c8ab..990206e2e559f 100644
--- a/recipes/scanpy-scripts/meta.yaml
+++ b/recipes/scanpy-scripts/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "scanpy-scripts" %}
-{% set version = "1.1.6" %}
+{% set version = "1.9.301" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,17 +7,13 @@ package:
 
 source:
   - url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-    sha256: 1701e35f93f5370ab451760b3892caf01b46d2898c3dd149e1dcba602e45eea1
+    sha256: c681d9cf5670d8b771b7327684f19d52f9661ee31e685241af4d960220a5d63b
     folder: scanpy-scripts
-  - url: https://pypi.io/packages/source/s/scanpy/scanpy-1.8.1.tar.gz 
-    sha256: 1b8603a868d783bd6c18c8db763a450153feefc8daed862c440749790d47c654
-    folder: scanpy
-    patches:
-      - scrublet.patch
 
 build:
   number: 0
   noarch: python
+  run_exports: '{{ pin_compatible("scanpy-scripts", max_pin="x.x") }}'
   entry_points:
     - scanpy-cli=scanpy_scripts.cli:cli
     - scanpy-read-10x=scanpy_scripts.cmds:READ_CMD
@@ -36,37 +32,57 @@ build:
     - scanpy-integrate=scanpy_scripts.cli:integrate
     - scanpy-multiplet=scanpy_scripts.cli:multiplet
   script: 
-    - "{{ PYTHON }} -m pip install {{ SRC_DIR }}/scanpy --no-deps --ignore-installed -vv" 
     - "{{ PYTHON }} -m pip install {{ SRC_DIR }}/scanpy-scripts --no-deps --ignore-installed -vv"
 
 requirements:
   host:
-    - python >=3.7
+    - python <3.10
     - pip
+    - scanpy =1.9.3
+    - louvain
+    - igraph
+    - leidenalg
+    - loompy
+    - Click <8
+    - harmonypy >=0.0.5
+    - bbknn >=1.5.0,<1.6.0
+    - mnnpy >=0.1.9.5
+    - scipy <1.9.0
+    - scikit-learn <1.3.0
+    - scrublet
+    - fa2
+    # for testing
+    - bats
+    - black
+    - pytest    
     - flit-core
     - setuptools_scm
     - pytoml
     - packaging
   run:
-    - anndata
-    - bbknn>=1.5.0
-    - click<8
-    - fa2
-    - h5py<3.0.0
-    - harmonypy>=0.0.5
+    - python <3.10
+    - scanpy =1.9.3
     - leidenalg
     - loompy
     - louvain
-    - matplotlib-base
-    - mnnpy>=0.1.9.5
-    - packaging
-    - pandas
-    - python>=3.6
-    - scanpy=1.8.1
-    - scikit-misc
-    - scipy 
+    - igraph
+    - Click <8
+    - harmonypy >=0.0.5
+    - bbknn >=1.5.0,<1.6.0
+    - mnnpy >=0.1.9.5
+    # for mnnpy using n_jobs
+    - scipy <1.9.0
+    - scikit-learn <1.3.0
     - scrublet
-    - umap-learn
+    - fa2
+    # for testing
+    - bats
+    - black
+    - pytest    
+    - flit-core
+    - setuptools_scm
+    - pytoml
+    - packaging
 
 test:
   imports:
@@ -104,3 +120,4 @@ extra:
   recipe-maintainers:
     - nh3
     - pinin4fjords
+    - pcm32
diff --git a/recipes/scar/meta.yaml b/recipes/scar/meta.yaml
index 1b2787234f5de..ed6eb33f81d7c 100644
--- a/recipes/scar/meta.yaml
+++ b/recipes/scar/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.5.2" %}
-{% set sha256 = "67f015be316ca11f679102d8d959bbefd9e92ad35f52af9ddba3bb5cd7210af7" %}
+{% set version = "0.6.0" %}
+{% set sha256 = "f4a3ee980dcad4465d23e146e23605df61e4ebc016f2c7279820dcbc3ee111c1" %}
 
 package:
   name: scar
@@ -13,26 +13,25 @@ build:
   noarch: python
   number: 0
   script: "{{ PYTHON }} -m pip install . -vv --no-deps"
+  run_exports:
+    - {{pin_subpackage("scar", max_pin="x.x")}}
+
 
 requirements:
   host:
-    - python >=3.8.6
+    - python >=3.10
     - pip
   run:
-    - python >=3.8.6
-    - setuptools <=59.5.0   
-    - cudatoolkit >=11.1
+    - python >=3.10
+    - setuptools >=68.1.2
     - pytorch >=1.10.0
     - torchvision >=0.9.0
     - tqdm >=4.62.3
-    - pandas >=1.3.4
     - seaborn >=0.11.2
     - tensorboard >=2.2.1
     - scikit-learn >=1.0.1
-    - anndata
     - scanpy
     - pyro-ppl >=1.8.0
-    - numpy <=1.21
 
 test:
   commands:
@@ -42,4 +41,4 @@ about:
   home: https://github.com/Novartis/scar
   license: MIT
   license_file: docs/License.rst
-  summary: 'scAR (single cell Ambient Remover) is a package for denoising multiple single cell omics data.'
+  summary: 'scAR (single-cell Ambient Remover) is a deep learning model for ambient signal removal in droplet-based single cell omicsis.'
diff --git a/recipes/sccmec/build.sh b/recipes/sccmec/build.sh
new file mode 100644
index 0000000000000..aa318ca945110
--- /dev/null
+++ b/recipes/sccmec/build.sh
@@ -0,0 +1,11 @@
+#!/bin/bash
+
+mkdir -p $PREFIX/bin ${PREFIX}/share/sccmec
+
+# Copy wrapper
+chmod 755 bin/sccmec-bioconda
+cp -f bin/sccmec-bioconda $PREFIX/bin/sccmec
+
+# Copy schema (~100kb)
+cp -f data/sccmec.yaml ${PREFIX}/share/sccmec
+cp -f data/sccmec.fasta ${PREFIX}/share/sccmec
diff --git a/recipes/sccmec/meta.yaml b/recipes/sccmec/meta.yaml
new file mode 100644
index 0000000000000..166bd125861d4
--- /dev/null
+++ b/recipes/sccmec/meta.yaml
@@ -0,0 +1,36 @@
+{% set name="sccmec" %}
+{% set version = "1.0.0" %}
+{% set sha256 = "1bbddeec9a1fb2d340a8971dfa6a705e0beca80c3ef03483b52079f91e242b6a" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/rpetit3/sccmec/archive/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
+
+requirements:
+  run:
+    - camlhmp >=0.1.0
+
+test:
+  commands:
+    - sccmec --version
+    - sccmec --help
+
+about:
+  home: https://github.com/rpetit3/sccmec
+  license: MIT
+  license_file: LICENSE
+  summary: A tool for typing SCCmec cassettes in assemblies
+
+extra:
+  recipe-maintainers:
+    - rpetit3
diff --git a/recipes/scepia/meta.yaml b/recipes/scepia/meta.yaml
index 7ceeb5488ab86..60415d341d309 100644
--- a/recipes/scepia/meta.yaml
+++ b/recipes/scepia/meta.yaml
@@ -9,7 +9,7 @@ source:
   sha256: 7c899802eaf3561f1c3334cb2ff5c55753c688c47ef08b16d3875cc88ed981d7
 
 build:
-  number: 0
+  number: 1
   noarch: python
   script: {{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv
 
@@ -21,7 +21,7 @@ requirements:
     - python >=3.7
     - adjusttext
     - geosketch
-    - gimmemotifs >=0.15.2
+    - gimmemotifs >=0.15.2, <=0.17.1
     - leidenalg
     - loguru
     - louvain
@@ -41,5 +41,7 @@ about:
 extra:
   recipe-maintainers:
     - simonvh
+    - maarten-vd-sande
+    - rebecza
   identifiers:
     - biotools:scepia
diff --git a/recipes/scib/meta.yaml b/recipes/scib/meta.yaml
new file mode 100644
index 0000000000000..ceedea58c4998
--- /dev/null
+++ b/recipes/scib/meta.yaml
@@ -0,0 +1,61 @@
+{% set name = "scib" %}
+{% set version = "1.1.5" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+build:
+  number: 0
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  skip: True  # [ py < 38 or py > 311]
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/scib-{{ version }}.tar.gz
+  sha256: 7ab3183065f2d861b64f88823a55cec767327a37ad6d0eaccce7b43c996293ad
+  patches:
+    - setup_compiler.patch
+
+requirements:
+  build:
+    - {{ compiler('cxx') }}
+  host:
+    - python
+    - pip
+  run:
+    - anndata >=0.7.2
+    - deprecated
+    - h5py
+    - igraph >=0.10
+    - leidenalg
+    - llvmlite
+    - matplotlib-base
+    - numpy
+    - pandas <2
+    - pydot
+    - python
+    - scanpy >=1.5, <1.10
+    - scikit-learn
+    - scikit-misc
+    - scipy
+    - seaborn
+    - umap-learn
+
+test:
+  imports:
+    - scib
+
+about:
+  home: https://github.com/theislab/scib
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE.txt
+  summary: "Evaluating single-cell data integration methods"
+  doc_url: https://scib.readthedocs.io/en/latest/
+  dev_url: https://github.com/theislab/scib
+
+extra:
+  identifiers:
+    - doi:10.1038/s41592-021-01336-8
diff --git a/recipes/scib/setup_compiler.patch b/recipes/scib/setup_compiler.patch
new file mode 100644
index 0000000000000..5aedf1a1a7886
--- /dev/null
+++ b/recipes/scib/setup_compiler.patch
@@ -0,0 +1,21 @@
+diff --git a/setup.py b/setup.py
+index 45677ce..ba1276c 100644
+--- a/setup.py
++++ b/setup.py
+@@ -1,11 +1,15 @@
+ import subprocess
+ import sys
++import os
+ 
+ from setuptools import setup
+ 
++# get compiler path
++gxx = os.environ.get("CXX", "g++")
++
+ try:
+     cmd = (
+-        "g++ -std=c++11 -O3 scib/knn_graph/knn_graph.cpp -o scib/knn_graph/knn_graph.o"
++        f"{gxx} -std=c++11 -O3 scib/knn_graph/knn_graph.cpp -o scib/knn_graph/knn_graph.o"
+     )
+     sys.stdout.write("Compile knn_graph C++ code for LISI metric...\n")
+     sys.stdout.flush()
diff --git a/recipes/scirpy/LICENSE b/recipes/scirpy/LICENSE
new file mode 100644
index 0000000000000..ac2561aeab97c
--- /dev/null
+++ b/recipes/scirpy/LICENSE
@@ -0,0 +1,32 @@
+BSD 3-Clause License
+
+Copyright (c) 2020 Gregor Sturm
+Copyright (c) 2020 Tamas Szabo
+Copyright (c) 2020 Francesca Finotello
+Copyright (c) 2020 Institute of Bioinformatics, Medical University of Innsbruck
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this
+   list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice,
+   this list of conditions and the following disclaimer in the documentation
+   and/or other materials provided with the distribution.
+
+3. Neither the name of the copyright holder nor the names of its
+   contributors may be used to endorse or promote products derived from
+   this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
diff --git a/recipes/scirpy/meta.yaml b/recipes/scirpy/meta.yaml
index 0304c3f000540..160e6540d5bf3 100644
--- a/recipes/scirpy/meta.yaml
+++ b/recipes/scirpy/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "scirpy" %}
-{% set version = "0.13.0" %}
+{% set version = "0.17.0" %}
 
 package:
   name: {{ name|lower }}
@@ -7,22 +7,23 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 4bae047ec50b4c8228464aef5aa03207993521fcd17bf9e3bcc2c033a71425ea 
+  sha256: f61653a4f7387562ec89b00fbfd7cab762c0bf3320f21ccfc47df80a13cc5d41
   folder: "{{ name }}-{{ version }}"
 
 build:
-  number: 1
+  number: 0
   noarch: python
   script:
     - cd "{{ name }}-{{ version }}"
-    - "{{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv"
+    - "{{ PYTHON }} -m pip install . --no-build-isolation --no-deps -vvv"
+  run_exports:
+    - {{ pin_subpackage('scirpy', max_pin="x.x") }}
 
 requirements:
   host:
     - python >=3.9
     - hatchling
     - hatch-vcs
-    
   run:
     - python >=3.9
     - anndata >=0.9
@@ -43,7 +44,8 @@ requirements:
     - adjusttext >=0.7
     - numba >=0.41.0
     - pooch >=1.7.0
-
+    - pycairo >=1.20  # [win]
+    - joblib >=1.3.1
 
 test:
   imports:
@@ -52,14 +54,15 @@ test:
     - pytest
 
 about:
-  home: https://icbi-lab.github.io/scirpy
-  dev_url: https://github.com/icbi-lab/scirpy 
-  license: BSD-3
+  home: https://scirpy.scverse.org/en/latest/
+  dev_url: https://github.com/icbi-lab/scirpy
+  license: BSD-3-Clause
   license_family: BSD
-  summary: A Scanpy extension for analyzing single-cell T-cell and B-cell receptor (TCR/BCR) sequencing data.  
+  license_file: LICENSE
+  summary: A Scanpy extension for analyzing single-cell T-cell and B-cell receptor (TCR/BCR) sequencing data.
 
 extra:
   recipe-maintainers:
    - grst
   identifiers:
-   - doi:10.1101/2020.04.10.035865  
+   - doi:10.1101/2020.04.10.035865
diff --git a/recipes/scmap-cli/meta.yaml b/recipes/scmap-cli/meta.yaml
index ecbba44befedb..6af9968474cf5 100644
--- a/recipes/scmap-cli/meta.yaml
+++ b/recipes/scmap-cli/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.0.11" %}
+{% set version = "0.1.0" %}
 
 package:
   name: scmap-cli
@@ -6,29 +6,31 @@ package:
 
 source:
   url: https://github.com/ebi-gene-expression-group/scmap-cli/archive/{{ version }}.tar.gz
-  sha256: 7ea94d5e3cd20121bace848fffe01027c206c08825cc4a6b76d872afe5cec78b
+  sha256: 58444bf3e5a1f10261635b585aaeb1f259fd6e21561817899f5378a4b2811498
 
 build:
-  number: 1
+  number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('scmap-cli', max_pin="x.x") }}
 
 requirements:
-    run:
-        - bioconductor-biobase
-        - bioconductor-singlecellexperiment
-        - bioconductor-loomexperiment
-        - bioconductor-scmap >=1.6.0,<1.7
-        - r-optparse
-        - r-workflowscriptscommon
+  run:
+    - bioconductor-biobase
+    - bioconductor-singlecellexperiment
+    - bioconductor-loomexperiment
+    - bioconductor-scmap >=1.6.0,<1.7
+    - r-optparse
+    - r-workflowscriptscommon
 
 test:
-    commands:
-        - scmap-index-cell.R --help
-        - scmap-scmap-cluster.R --help
-        - scmap-index-cluster.R --help
-        - scmap-scmap-cell.R --help
-        - scmap-select-features.R --help
-        - which scmap-cli-post-install-tests.sh
+  commands:
+    - scmap-index-cell.R --help
+    - scmap-scmap-cluster.R --help
+    - scmap-index-cluster.R --help
+    - scmap-scmap-cell.R --help
+    - scmap-select-features.R --help
+    - which scmap-cli-post-install-tests.sh
 
 about:
   home: https://github.com/ebi-gene-expression-group/scmap-cli
@@ -45,5 +47,3 @@ about:
       formats allowing composite workflows using a variety of software
       packages.
   license_family: GPL
-
-
diff --git a/recipes/scoring-matrices/meta.yaml b/recipes/scoring-matrices/meta.yaml
new file mode 100644
index 0000000000000..1eff9398ebd5c
--- /dev/null
+++ b/recipes/scoring-matrices/meta.yaml
@@ -0,0 +1,49 @@
+{% set name = "scoring-matrices" %}
+{% set module = "scoring_matrices" %}
+{% set version = "0.2.0" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: cb41deca61bc113b6153c8bc18a1c0aa16729c881e0a8d3a464802e1feb897a4
+
+build:
+  number: 0
+  skip: True  # [py < 36]
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir --use-pep517 -vvv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+  host:
+    - python
+    - pip
+    - cython
+  run:
+    - python
+
+test:
+  imports:
+    - {{ module }}
+  commands:
+    - python -m unittest -vv {{ module }}.tests
+
+about:
+  home: https://github.com/althonos/scoring-matrices
+  license: MIT
+  license_family: MIT
+  license_file: COPYING
+  summary: Dependency free, Cython-compatible scoring matrices to use with biological sequences.
+  doc_url: https://scoring-matrices.readthedocs.org/
+  dev_url: https://github.com/althonos/scoring-matrices
+
+extra:
+  recipe-maintainers:
+    - althonos
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/scorpio/meta.yaml b/recipes/scorpio/meta.yaml
index 558adb4c2d5bc..85b5818955c86 100644
--- a/recipes/scorpio/meta.yaml
+++ b/recipes/scorpio/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.3.17" %}
+{% set version = "0.3.19" %}
 
 package:
   name: scorpio
@@ -6,12 +6,14 @@ package:
 
 source:
   url: https://github.com/cov-lineages/scorpio/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 8c17b2fabb788b0f418ad9c6ce4146b22b81ea2a544979f3d3beef02e97cd9b9
+  sha256: c8a45bf8f84adf8ddb6389e9056e6f8e08a73d2877f60022942d65f5fadf69c9
 
 build:
   number: 0
   noarch: python
   script: python -m pip install --no-deps --ignore-installed .
+  run_exports:
+    - {{ pin_subpackage("scorpio", max_pin="x.x") }}
 
 requirements:
   host:
@@ -26,7 +28,7 @@ test:
   commands:
     - scorpio classify --help
     - scorpio haplotype --help
-    - scorpio report --help
+    - scorpio list --help
     - scorpio define --help
 
 about:
diff --git a/recipes/screadcounts/meta.yaml b/recipes/screadcounts/meta.yaml
index c9e32396235b3..3780536d73673 100644
--- a/recipes/screadcounts/meta.yaml
+++ b/recipes/screadcounts/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "screadcounts" %}
-{% set version = "1.3.2" %}
-{% set sha256 = "d7dde05a80227ac5207b0495323fc9154202f2d4d082296964a1d5f16468870d" %}
+{% set version = "1.4.0" %}
+{% set sha256 = "61856534dc5c578e9d12bcb397dc696747685b33ef056c49d1ff766960676c30" %}
 
 package:
   name: {{ name }}
@@ -13,6 +13,8 @@ source:
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('screadcounts', max_pin="x.x") }}
 
 extra:
   skip-lints:
diff --git a/recipes/scrnasim-toolz/meta.yaml b/recipes/scrnasim-toolz/meta.yaml
new file mode 100644
index 0000000000000..065e125121da5
--- /dev/null
+++ b/recipes/scrnasim-toolz/meta.yaml
@@ -0,0 +1,52 @@
+{% set name = "scrnasim-toolz" %}
+{% set version = "0.1.1" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://github.com/zavolanlab/scRNAsim-toolz/archive/refs/tags/v0.1.1.tar.gz
+  sha256: a78f44d1e5a9d996b7648a59703a743f2038671c83100f42b3df8e244a472096
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - transcript-sampler = scRNAsim_toolz.transcript_sampler.cli:main
+    - structure-generator = scRNAsim_toolz.structure_generator.cli:app
+    - sequence-extractor = scRNAsim_toolz.sequence_extractor.cli:main
+    - priming-site-predictor = scRNAsim_toolz.priming_site_predictor.cli:main
+    - cdna-generator = scRNAsim_toolz.cdna_generator.cli:main
+    - fragment-selector = scRNAsim_toolz.fragment_selector.cli:main
+    - read-sequencer = scRNAsim_toolz.read_sequencer.cli:main
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
+
+requirements:
+  host:
+    - python <=3.10
+    - pip
+    - setuptools-git >=1.2
+  run:
+    - python <=3.10
+    - biopython >=1.78
+    - numpy >=1.23.3
+    - pandas >=1.4.4
+    - packaging
+    - importlib-metadata
+    - polars ==0.16.17
+    - gtfparse
+    - pyarrow
+
+test:
+  commands:
+    - transcript-sampler --version
+
+about:
+  home: https://github.com/zavolanlab/scRNAsim-toolz
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: Tools used by scRNAsim workflow.
diff --git a/recipes/scsplit/meta.yaml b/recipes/scsplit/meta.yaml
new file mode 100644
index 0000000000000..eabd6ab147f87
--- /dev/null
+++ b/recipes/scsplit/meta.yaml
@@ -0,0 +1,39 @@
+{% set name = "scSplit" %}
+{% set version = "1.0.8.2" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/scSplit-{{ version }}.tar.gz
+  sha256: e39e2e840ec34bec289619817d7ccee70165e79a361041b1b38e53beac1b7fa3
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('scsplit', max_pin="x.x.x") }}
+
+requirements:
+  host:
+    - python
+    - pip
+  run:
+    - python
+
+test:
+  imports:
+    - scSplit
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/jon-xu/scSplit
+  summary: Genotype-free demultiplexing of pooled single-cell RNA-Seq
+  license: MIT
+
+
diff --git a/recipes/sctriangulate/LICENSE b/recipes/sctriangulate/LICENSE
new file mode 100644
index 0000000000000..f8836ff0edea6
--- /dev/null
+++ b/recipes/sctriangulate/LICENSE
@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2021 Guangyuan(Frank) Li
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.
diff --git a/recipes/sctriangulate/meta.yaml b/recipes/sctriangulate/meta.yaml
new file mode 100644
index 0000000000000..9d3d2eb7a402a
--- /dev/null
+++ b/recipes/sctriangulate/meta.yaml
@@ -0,0 +1,41 @@
+{% set name = "sctriangulate" %}
+{% set version = "0.13.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/sctriangulate-{{ version }}.tar.gz
+  sha256: dc24a47c912c15d06465ea6ec87599e5bcdf06d18955d964f96eebce445a7bc2
+
+build:
+  number: 0
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  run_exports:
+    - {{ pin_subpackage('sctriangulate', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.7
+    - pip
+  run:
+    - python >=3.7
+    - squidpy
+    - gseapy ==0.10.4
+    - scrublet ==0.2.3
+    - yattag
+    - anytree
+    - mygene ==3.2.2
+
+test:
+  imports:
+    - sctriangulate
+
+about:
+  home: https://github.com/frankligy/scTriangulate
+  summary: A Python package to mix-and-match conflicting clustering results in single cell analysis, and generate reconciled clustering solutions.
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
diff --git a/recipes/sdeper/meta.yaml b/recipes/sdeper/meta.yaml
new file mode 100755
index 0000000000000..3ac11f91ac0f9
--- /dev/null
+++ b/recipes/sdeper/meta.yaml
@@ -0,0 +1,66 @@
+# This is the recipe file to publish SDePER to Bioconda
+{% set name = "sdeper" %}
+{% set version = "1.3.0" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: 539621f0cca35c04e70a27c330af4b192b7d72babd6288c24e976b60edd5f052
+
+build:
+  number: 0
+  entry_points:
+    - runDeconvolution = cvaeglrm:main
+    - runImputation = imputation:main
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage('sdeper', max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.9.12,<3.11
+    - pip
+    - twine >=4.0
+  run:
+    - distinctipy ==1.2.2
+    - matplotlib-base ==3.5.2
+    - networkx ==2.8.4
+    - numba ==0.55.2
+    - numpy ==1.22.4
+    - openpyxl ==3.0.10
+    - pandas ==1.4.3
+    - python >=3.9.12,<3.11
+    - reportlab ==4.1.0
+    - scanpy ==1.9.1
+    - scikit-learn ==1.1.1
+    - scikit-misc ==0.1.4
+    - scipy ==1.8.1
+    - seaborn ==0.11.2
+    - tensorflow-base 2.9.1 cpu_*  # explicitly specify to use cpu version out from cpu_, cuda, eigen_, gpu_, or mkl_ in conda packages
+    - umap-learn ==0.5.3
+    - libopencv ==4.6.0  # install opencv in conda requires installing these 3 packages, headless version is used
+    - opencv ==4.6.0
+    - py-opencv ==4.6.0
+
+test:
+  commands:
+    - runDeconvolution --help
+    - runImputation --help
+
+about:
+  home: "https://az7jh2.github.io/SDePER/"
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "Spatial Deconvolution method with Platform Effect Removal"
+  doc_url: "https://sdeper.readthedocs.io/en/latest/"
+  dev_url: "https://github.com/az7jh2/SDePER"
+  description: "SDePER (Spatial Deconvolution method with Platform Effect Removal) is a hybrid machine learning and regression method to deconvolve Spatial barcoding-based transcriptomic data using reference single-cell RNA sequencing data, considering platform effects removal, sparsity of cell types per capture spot and across-spots spatial correlation in cell type compositions. SDePER is also able to impute cell type compositions and gene expression at unmeasured locations in a tissue map with enhanced resolution."
+
+extra:
+  recipe-maintainers:
+    - az7jh2
diff --git a/recipes/sdm/meta.yaml b/recipes/sdm/meta.yaml
index 29d6002612957..2fd603c2694d5 100644
--- a/recipes/sdm/meta.yaml
+++ b/recipes/sdm/meta.yaml
@@ -1,18 +1,20 @@
 {% set name = "sdm" %}
-{% set version = "2.09" %}
+{% set version = "2.17" %}
 
 package:
-  name: {{ name }} 
+  name: {{ name }}
   version: {{ version }}
 
 source:
   url: https://github.com/hildebra/{{ name }}/archive/v{{ version }}.tar.gz
-  sha256: 00edf9fd92c23d63467ff8f9aacc2959dc981971eca6970624be48f7063a4901
+  sha256: d1655719b232b6c474c132be850c7a2633df4ef46b497935152f68b94f5f166f
   patches:
     - sdm_1.83.patch
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x.x") }}
 
 requirements:
   build:
@@ -25,10 +27,11 @@ requirements:
 
 test:
   commands:
-    - sdm 
+    - sdm
 
 about:
   home: https://github.com/hildebra/sdm/
   license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
   summary: 'sdm - simple demultiplex tool for FASTQ demultiplexing and dereplication'
diff --git a/recipes/sdrf-pipelines/meta.yaml b/recipes/sdrf-pipelines/meta.yaml
index b80aa892a6454..3727971a305b5 100644
--- a/recipes/sdrf-pipelines/meta.yaml
+++ b/recipes/sdrf-pipelines/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "sdrf-pipelines" %}
-{% set version = "0.0.22" %}
+{% set version = "0.0.26" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,26 +7,29 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 4e39b83581ee1a90da712f685f1e013c59cfc4b89a3d7fe8137ab63aa2d6b0c3
+  sha256: eba64fddad8ecc05ac3efecc43e19a7ba556ede7cd5b57475277a3ec20195216
 
 build:
   number: 0
   noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
   entry_points:
     - parse_sdrf = sdrf_pipelines.parse_sdrf:main
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps -vvv"
 
 requirements:
   host:
     - pip
-    - python  >=3.5
+    - python >=3.5
   run:
     - click
     - requests
     - pandas
     - pandas_schema
-    - python  >=3.5
+    - python >=3.5
     - pyaml
+    - defusedxml
     - pytest
 
 test:
@@ -34,7 +37,6 @@ test:
     - sdrf_pipelines
     - sdrf_pipelines.openms
     - sdrf_pipelines.sdrf
-    - sdrf_pipelines.tests
     - sdrf_pipelines.utils
     - sdrf_pipelines.zooma
   commands:
diff --git a/recipes/searchgui/build.sh b/recipes/searchgui/build.sh
index c16005eb8e9e8..006bef370f758 100644
--- a/recipes/searchgui/build.sh
+++ b/recipes/searchgui/build.sh
@@ -1,4 +1,4 @@
-#!/bin/sh
+#!/bin/bash
 set -eu -o pipefail
 
 outdir=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
diff --git a/recipes/searchgui/meta.yaml b/recipes/searchgui/meta.yaml
index 820357c2977d5..5f489c4eb2479 100644
--- a/recipes/searchgui/meta.yaml
+++ b/recipes/searchgui/meta.yaml
@@ -1,7 +1,7 @@
 # Do not forget to update the version string in the searchgui.py file
 {% set name = "SearchGUI" %}
-{% set version = "4.2.17" %}
-{% set sha256 = "cd47cd211626ff864d1508062f12c2a38557251bb0f30a32ccdafe30c385fe85" %}
+{% set version = "4.3.6" %}
+{% set sha256 = "76c3662165e929a82d49408d344409b62057cb0c0cf6a4834b54585a756cf894" %}
 {% set build = "0" %}
 
 package:
@@ -13,6 +13,8 @@ build:
   noarch: generic
   binary_relocation:
     - 'share/searchgui-{{ version }}-{{ build }}/resources/MS Amanda/*'
+  run_exports:
+    - {{ pin_subpackage('searchgui', max_pin="x") }}
 
 source:
   url: http://genesis.ugent.be/maven2/eu/isas/searchgui/{{ name }}/{{ version }}/{{ name }}-{{ version }}-mac_and_linux.tar.gz
@@ -21,13 +23,13 @@ source:
 requirements:
   host:
     - xtandem ==15.12.15.2
-    - metamorpheus ==1.0.2
+    - metamorpheus ==1.0.5
     - blast >=2.14.0
   run:
     - python
     - openjdk >=17
     - xtandem ==15.12.15.2
-    - metamorpheus ==1.0.2
+    - metamorpheus ==1.0.5
     - mono >=6.0.0
     - fontconfig
     - fonts-conda-ecosystem
@@ -45,7 +47,7 @@ test:
 
 about:
   home: https://github.com/compomics/searchgui
-  license: Apache License 2.0
+  license: Apache-2.0
   license_family: APACHE
   summary: User-friendly graphical tool for using proteomics identification search engines
   description:
diff --git a/recipes/searchgui/searchgui.py b/recipes/searchgui/searchgui.py
index 7f0398868d092..c6c3cfb7c386d 100755
--- a/recipes/searchgui/searchgui.py
+++ b/recipes/searchgui/searchgui.py
@@ -14,7 +14,7 @@
 from os import getenv
 from os import X_OK
 
-jar_file = 'SearchGUI-4.2.17.jar'
+jar_file = 'SearchGUI-4.3.6.jar'
 
 default_jvm_mem_opts = ['-Xms2g', '-Xmx4g']
 
diff --git a/recipes/segalign-full/meta.yaml b/recipes/segalign-full/meta.yaml
new file mode 100644
index 0000000000000..f17cc9e53a3db
--- /dev/null
+++ b/recipes/segalign-full/meta.yaml
@@ -0,0 +1,41 @@
+{% set version = "0.1.2.2" %}
+  
+package:
+  name: segalign-full
+  version: {{ version }}
+
+build:
+  number: 0
+  noarch: generic
+  run_exports:
+    - {{ pin_compatible('segalign-full', max_pin='x.x') }}
+
+requirements:
+  run:
+    - segalign ={{ version }}
+    - lastz
+    - ucsc-fatotwobit
+
+test:
+  commands:
+    - segalign --help
+    - segalign_repeat_masker --help
+    - lastz --version 2>&1 | grep released
+    - which faToTwoBit
+
+about:
+  home: https://github.com/gsneha26/SegAlign
+  summary: 'SegAlign: A Scalable GPU-Based Whole Genome Aligner'
+  description: |
+    SegAlign is a Scalable GPU System for Pairwise Whole Genome
+    Alignments based on LASTZ's seed-filter-extend paradigm.
+  license: MIT
+  license_family: MIT
+  license_url: https://github.com/gsneha26/SegAlign/blob/main/LICENSE
+  doc_url: https://github.com/gsneha26/SegAlign/blob/main/README.md
+  dev_url: https://github.com/richard-burhans/SegAlign/blob/scoring/README.md
+
+extra:
+  identifiers:
+    - doi:10.1109/SC41405.2020.00043
+    - doi:10.5281/zenodo.3880947
diff --git a/recipes/segmetrics/meta.yaml b/recipes/segmetrics/meta.yaml
index 73bb5a142078f..bc1fdeceb7031 100644
--- a/recipes/segmetrics/meta.yaml
+++ b/recipes/segmetrics/meta.yaml
@@ -1,20 +1,20 @@
 {% set name = "segmetrics" %}
-{% set version = "1.4" %}
-{% set repo_url = "https://github.com/BMCV/segmetrics.py" %}
-{% set docs_url = "https://segmetrics.readthedocs.io" %}
+{% set version = "1.5" %}
 
 package:
   name: "{{ name }}"
   version: "{{ version }}"
 
 source:
-  url: "{{ repo_url }}/archive/refs/tags/{{ version }}.zip"
-  sha256: 65fce3cd45c4f1fa0f83013a3f7c245e8ea2698ed94a75454b5f5dc833c97ad5
+  url: "https://github.com/BMCV/segmetrics/archive/refs/tags/{{ version }}.zip"
+  sha256: 3169055e6d7fdc269d7ce0d32c1f5871752001a0e03f13a25de67d52a1b4e386
 
 build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install --no-deps --ignore-installed . -vv "
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   host:
@@ -39,11 +39,11 @@ test:
     - python -m segmetrics.cli --help
 
 about:
-  home: "{{ repo_url }}"
+  home: "https://github.com/BMCV/segmetrics"
   license: MIT
   summary: "A Python package implementing image segmentation and object detection performance measures, for biomedical image analysis and beyond."
-  dev_url: "{{ repo_url }}"
-  doc_url: "{{ docs_url }}"
+  dev_url: "https://github.com/BMCV/segmetrics"
+  doc_url: "https://segmetrics.readthedocs.io"
 
 extra:
   recipe-maintainers:
diff --git a/recipes/segzoo/meta.yaml b/recipes/segzoo/meta.yaml
index 40c193fa5d709..9d650119df3f1 100644
--- a/recipes/segzoo/meta.yaml
+++ b/recipes/segzoo/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "segzoo" %}
-{% set version = "1.0.11" %}
+{% set version = "1.0.13" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,26 +7,29 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 3422fc3e29320253e15bafef22d378470ed1d0d88b8364ecb553b756bb9a9d53
+  sha256: 03903414891982e4d296f253119cf404a525844abdc84b02285923866926a708
 
 build:
   noarch: python
   number: 0
   entry_points:
     - segzoo=segzoo.main:main
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation"
+  run_exports:
+    - {{ pin_subpackage('segzoo', max_pin="x") }}
 
 requirements:
   host:
-   - python >=3.8
+   - python >=3.7
    - pip
   run:
-    - python >=3.8
+    - python >=3.7
     - seaborn
     - segtools
     - ggd
-    - snakemake
+    - snakemake-minimal
     - pybedtools
+
 test:
   imports:
     - segzoo
@@ -35,7 +38,7 @@ test:
 
 about:
   home: "https://github.com/hoffmangroup/segzoo"
-  license: "GNU General Public v2 (GPLv2)"
+  license: "GPL-2.0-or-later"
   license_family: GPL2
   license_file: LICENSE.txt
   summary: "System for turnkey analysis of semi-automated genome annotations"
diff --git a/recipes/selam/meta.yaml b/recipes/selam/meta.yaml
index 8a34616bd07a0..befd25c006cac 100644
--- a/recipes/selam/meta.yaml
+++ b/recipes/selam/meta.yaml
@@ -11,7 +11,9 @@ source:
   sha256: {{sha256}}
 
 build:
-  number: 2
+  number: 3
+  run_exports:
+    - {{ pin_subpackage("selam", max_pin="x.x.x") }}  
 
 requirements:
   build:
@@ -45,3 +47,5 @@ about:
 extra:
   identifiers:
     - doi:10.1093/bioinformatics/btw365 # Paper in Bioinformatics
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/sem/meta.yaml b/recipes/sem/meta.yaml
index 02465703c233c..09d772cc3e45f 100644
--- a/recipes/sem/meta.yaml
+++ b/recipes/sem/meta.yaml
@@ -1,4 +1,4 @@
- {% set version = "1.2.0" %} 
+{% set version = "1.2.3" %}
 
 package:
   name: sem
@@ -7,9 +7,11 @@ package:
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('sem', max_pin="x") }}
 
 source:
-  sha256: f11ea1891c2b7347d5b9155ee576d1d07ca0e3fa04cae31d4597811d9ada6a76
+  sha256: ebb0d0fc303d052f62e6a1fcc2afd6df319774cbf249d603f747f48c0b624a12
   url: https://github.com/YenLab/SEM/releases/download/v{{ version }}/sem-{{ version }}.tar.gz
 
 requirements:
@@ -24,6 +26,7 @@ test:
 about:
   home: 'https://github.com/YenLab/SEM'
   license: "MIT"
+  license_family: MIT
   summary: "A nucleosome calling package for nucleosome subtype detection"
 
 extra:
diff --git a/recipes/semibin/meta.yaml b/recipes/semibin/meta.yaml
index b6082301bee3c..3904aca49cebb 100644
--- a/recipes/semibin/meta.yaml
+++ b/recipes/semibin/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "SemiBin" %}
-{% set version = "1.5.1" %}
+{% set version = "2.1.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,16 +7,18 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 25e627d2908210b48545c682bdd0f9ab647f119071902215a0e21f4a26e56608
-
+  sha256: 5345982bbc38e283043867d361ca8db727fec34a4c40b3a70e01914154d39bd5
 
 build:
   noarch: python
   number: 0
   entry_points:
-    - SemiBin=SemiBin.main:main1
+    - SemiBin=SemiBin.main:main_no_version
+    - SemiBin1=SemiBin.main:main1
     - SemiBin2=SemiBin.main:main2
-  script: python -m pip install --no-deps --ignore-installed .
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation . -vvv
+  run_exports:
+    - {{ pin_subpackage('semibin', max_pin="x") }}
 
 requirements:
   host:
@@ -36,7 +38,6 @@ requirements:
     - mmseqs2 13.45111
     - bedtools
     - hmmer
-    - fraggenescan
     - numexpr
     - prodigal
     - samtools
@@ -51,9 +52,14 @@ about:
   home: "https://github.com/BigDataBiology/SemiBin"
   license: MIT
   license_family: MIT
-  summary: "Metagenomic binning with siamese neural networks"
+  summary: "Metagenomic binning with semi-supervised siamese neural networks"
+  doc_url: https://semibin.readthedocs.io/en/latest/
 
 extra:
   recipe-maintainers:
     - luispedro
     - psj1997
+  identifiers:
+    - doi:10.1038/s41467-022-29843-y
+    - doi:10.1093/bioinformatics/btad209
+    - biotools:semibin
diff --git a/recipes/sentieon/meta.yaml b/recipes/sentieon/meta.yaml
index 10a3f5b927020..cb9b80ca081b4 100644
--- a/recipes/sentieon/meta.yaml
+++ b/recipes/sentieon/meta.yaml
@@ -1,23 +1,21 @@
-{% set version="202112.07" %}
+{% set version="202308.02" %}
 
 package:
   name: sentieon
   version: {{ version }}
 source:
   - url: https://s3.amazonaws.com/sentieon-release/software/sentieon-genomics-{{ version }}.tar.gz # [linux64]
-    sha256: 7178769bb5a9619840996356bda4660410fb6f228b2c0b86611bcb1c6bcfc2e1 # [linux64]
+    sha256: a04b98c1b7c4e8916fdc45f15685d5fd83db56386ec2478eb5ea594170405bd5 # [linux64]
     patches: # [linux64]
       # Fix driver scripts so they resolves location including symlinks
       - sentieon_symlinks.patch # [linux64]
-  - url: https://s3.amazonaws.com/sentieon-release/software/mac-sentieon-genomics-{{ version }}.tar.gz # [osx]
-    sha256: d1723e3e52a6a8677d0f1eb31206da356e22f4f4055e08a801d047f8e6a2c42f # [osx]
-    patches: # [osx]
-      - sentieon_symlinks.patch # [osx]
 
 build:
-  number: 3
-  skip: True # [not linux64 and not osx]
+  number: 0
+  skip: True # [not linux64]
   binary_relocation: false
+  run_exports:
+    - {{ pin_subpackage('sentieon', max_pin='x') }}
 
 requirements:
   build:
@@ -44,4 +42,4 @@ about:
 
 extra:
   skip-lints:
-      - should_be_noarch_generic # Supports OSX and Linux only
+      - should_be_noarch_generic # Supports Linux64 only
diff --git a/recipes/sentieon/sentieon_symlinks.patch b/recipes/sentieon/sentieon_symlinks.patch
index 41c95cc0c9b16..7278200c99ff8 100644
--- a/recipes/sentieon/sentieon_symlinks.patch
+++ b/recipes/sentieon/sentieon_symlinks.patch
@@ -4,7 +4,7 @@ index 52f51aaefd..e27fea8c2b 100755
 +++ b/bin/sentieon
 @@ -1,13 +1,17 @@
  #!/bin/sh
- # Copyright (c) 2014-2023 Sentieon Inc. All rights reserved
+ # Copyright (c) 2014-2024 Sentieon Inc. All rights reserved
 -case "$0" in
 -/*)     bin_dir=$(dirname "$0");;
 -*)      bin_dir=$(dirname "$(pwd)/$0");;
diff --git a/recipes/sepp/4.3.10/build.sh b/recipes/sepp/4.3.10/build.sh
new file mode 100644
index 0000000000000..a21681feb1e3a
--- /dev/null
+++ b/recipes/sepp/4.3.10/build.sh
@@ -0,0 +1,42 @@
+#!/bin/bash
+set -ex
+python setup.py config -c
+python setup.py upp -c
+
+# ensure SEPP's configuration file is at the correct location ...
+echo "${PREFIX}/share/sepp/sepp" > home.path
+# ensure directory is created ... ($SP_DIR = Python's site-packages location, see https://docs.conda.io/projects/conda-build/en/stable/user-guide/environment-variables.html#environment-variables-set-during-the-build-process)
+mkdir -p $SP_DIR/
+# ... before we copy content into it
+cp -rv home.path $SP_DIR/
+mkdir -p $PREFIX/share/sepp/sepp
+# ... and holds correct path names
+mv -v sepp-package/sepp/default.main.config $PREFIX/share/sepp/sepp/main.config
+# copy upp config, as it's still needed
+cp ./.sepp/upp.config $PREFIX/share/sepp/sepp/upp.config
+# replace $PREFIX with /opt/anaconda1anaconda2anaconda3 for later replacement of concrete build PREFIX
+# note: can't apply a patch here, as upp.config is not part of upstream but gets generated during python setup
+if [ $unamestr == 'Linux' ];
+then
+	sed -i 's@'"$PREFIX"'@/opt/anaconda1anaconda2anaconda3@g' $PREFIX/share/sepp/sepp/upp.config
+elif [ $unamestr == 'Darwin' ];
+then
+	gsed -i 's@'"$PREFIX"'@/opt/anaconda1anaconda2anaconda3@g' $PREFIX/share/sepp/sepp/upp.config
+fi
+
+$PYTHON -m pip install . --ignore-installed --no-deps -vv
+
+# copy bundled binaries, but hmmer which should be provided by conda, into $PREFIX/bin/
+mkdir -p $PREFIX/bin/
+cp `cat $SRC_DIR/.sepp/main.config | grep "^path" -m 1 | grep -v "hmm" | cut -d "=" -f 2 | xargs dirname`/* $PREFIX/bin/
+cp `cat $SRC_DIR/.sepp/upp.config | grep "^path" -m 1 | grep -v "hmm" | cut -d "=" -f 2 | xargs dirname`/* $PREFIX/bin/
+
+# configure run-sepp.sh for qiime2 fragment-insertion
+mv -v sepp-package/run-sepp.sh $PREFIX/bin/run-sepp.sh
+
+# copy files for tests to shared conda directory
+mkdir -p $PREFIX/share/sepp/ref/
+cp -v test/unittest/data/q2-fragment-insertion/input_fragments.fasta $PREFIX/share/sepp/ref/
+cp -v test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta $PREFIX/share/sepp/ref/
+cp -v test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk $PREFIX/share/sepp/ref/
+cp -v test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info $PREFIX/share/sepp/ref/
diff --git a/recipes/sepp/4.3.10/meta.yaml b/recipes/sepp/4.3.10/meta.yaml
new file mode 100644
index 0000000000000..74c5177ff7068
--- /dev/null
+++ b/recipes/sepp/4.3.10/meta.yaml
@@ -0,0 +1,63 @@
+{% set version = "4.3.10" %}
+{% set sha256 = "24d8d410138563017e6f2f1263d5e34427f5bbddb875b72a036f7c879cef203b" %}
+package:
+  name: sepp
+  version: '{{version}}'
+
+source:
+  - url: https://github.com/smirarab/sepp/archive/{{version}}.tar.gz
+    sha256: '{{sha256}}'
+    patches:
+      - relocate.run-sepp.sh.patch
+      - relocate.sepp.config.patch
+      # prevent python's setup to search for dendropy dependency via pip.
+      # Instead use dendropy provided by conda:
+      - nodeps.setup.py.patch
+
+build:
+  number: 3
+  run_exports:
+    - {{ pin_subpackage('sepp', max_pin="x") }}
+
+# upstream is not (yet) compatible with python >=3.10
+requirements:
+  host:
+    - python <=3.9
+    - setuptools
+    - pip
+    - dendropy 4.4.0
+    - openjdk
+    - hmmer ==3.1b2
+
+  run:
+    - python <=3.9
+    - dendropy 4.4.0
+    - openjdk
+    - hmmer ==3.1b2
+    - pasta
+    # TODO: source bundled binaries as conda packages.
+    # But pplacer / guppy are not available for OSX.
+    # - pplacer
+
+test:
+  commands:
+    - run_sepp.py --help
+    - run-sepp.sh $PREFIX/share/sepp/ref/input_fragments.fasta testrun_tiny -a $PREFIX/share/sepp/ref/reference_alignment_tiny.fasta -t $PREFIX/share/sepp/ref/reference_phylogeny_tiny.nwk -r $PREFIX/share/sepp/ref/RAxML_info-reference-gg-raxml-bl.info -x 1 -b 1
+    - grep "f__Halomonadaceae" testrun_tiny_placement.tog.relabelled.tre
+    - grep "testseqd" testrun_tiny_placement.tog.relabelled.tre
+    - run_upp.py --help
+
+about:
+  home: https://github.com/smirarab/sepp
+  license: GPLv3
+  license_family: GPL3
+  license_file: LICENSE
+  summary: SATe-enabled phylogenetic placement
+
+extra:
+  identifiers:
+    - biotools:sepp
+  skip-lints:
+    # necessary, because sepp is NOT platform independent:
+    # during build time, platform specific binaries for pplacer / guppy are copied into the PREFIX/bin dir
+    - should_be_noarch_generic
diff --git a/recipes/sepp/4.3.10/nodeps.setup.py.patch b/recipes/sepp/4.3.10/nodeps.setup.py.patch
new file mode 100644
index 0000000000000..f93b859cf421e
--- /dev/null
+++ b/recipes/sepp/4.3.10/nodeps.setup.py.patch
@@ -0,0 +1,11 @@
+--- setup.py	2019-03-31 07:43:25.000000000 +0200
++++ setup.py	2019-04-03 12:12:30.701516881 +0200
+@@ -219,7 +219,7 @@
+       author_email="smirarab@gmail.com, namphuon@cs.utah.edu",
+ 
+       license="General Public License (GPL)",
+-      install_requires=["dendropy >= 4.0.0"],
++      install_requires=[],
+       provides=["sepp"],
+       scripts=["run_sepp.py", 'run_tipp.py', 'run_upp.py', 'run_abundance.py',
+                "split_sequences.py", "run_tipp_tool.py"],
diff --git a/recipes/sepp/4.3.10/relocate.run-sepp.sh.patch b/recipes/sepp/4.3.10/relocate.run-sepp.sh.patch
new file mode 100644
index 0000000000000..89839cb66476f
--- /dev/null
+++ b/recipes/sepp/4.3.10/relocate.run-sepp.sh.patch
@@ -0,0 +1,36 @@
+--- sepp/sepp-package/run-sepp.sh	2019-03-19 16:33:17.267182143 +0100
++++ sepp-package/run-sepp.sh	2019-03-19 20:23:08.591954892 +0100
+@@ -111,7 +111,7 @@
+ done
+ 
+ 
+-DIR=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
++DIR=/opt/anaconda1anaconda2anaconda3/share/sepp/
+ 
+ # Reference tree
+ if [ -z $t ]; then
+@@ -134,7 +134,7 @@
+ if [ ! -z "$printDebug" ]; then
+ 	export SEPP_DEBUG=True
+ fi;
+-python $DIR/sepp/run_sepp.py -P $p -A $a -t $t -a $alg -r $rxi -f $f -o $name $opts -d $tmp/ -p $tmpssd 1>sepp-$name-out.log 2>sepp-$name-err.log
++run_sepp.py -P $p -A $a -t $t -a $alg -r $rxi -f $f -o $name $opts -d $tmp/ -p $tmpssd 1>sepp-$name-out.log 2>sepp-$name-err.log
+ 
+ tail sepp-$name-*
+ 
+@@ -146,13 +146,11 @@
+ # we might want to split computation in two parts: a) obtaining placements and b) creation of an insertion tree.
+ # If -n set to something, we stop after a) and leave it to the user to compute b) afterwards.
+ if [ -z ${noTree+x} ]; then
+-	gbin=$( dirname `grep -A1 "pplacer" $DIR/sepp/.sepp/main.config |grep path|sed -e "s/^path=//g"` )
+-
+-	$gbin/guppy tog ${name}_placement.json
++	guppy tog ${name}_placement.json
+ 
+ 	cat ${name}_placement.tog.tre | python ${name}_rename-json.py > ${name}_placement.tog.relabelled.tre
+ 
+-	$gbin/guppy tog --xml ${name}_placement.json
++	guppy tog --xml ${name}_placement.json
+ 
+ 	cat ${name}_placement.tog.xml | python ${name}_rename-json.py > ${name}_placement.tog.relabelled.xml
+ else
diff --git a/recipes/sepp/4.3.10/relocate.sepp.config.patch b/recipes/sepp/4.3.10/relocate.sepp.config.patch
new file mode 100644
index 0000000000000..cb5f917265157
--- /dev/null
+++ b/recipes/sepp/4.3.10/relocate.sepp.config.patch
@@ -0,0 +1,28 @@
+--- sepp-package/sepp/default.main.config	2019-03-18 10:14:42.363446570 +0100
++++ sepp-package/sepp/default.main.config	2019-04-04 10:10:22.171485197 +0200
+@@ -1,20 +1,20 @@
+ [pplacer]
+-path=~/pplacer
++path=/opt/anaconda1anaconda2anaconda3/bin/pplacer
+ 
+ [hmmalign]
+-path=~/hmmalign
++path=/opt/anaconda1anaconda2anaconda3/bin/hmmalign
+ 
+ [hmmsearch]
+-path=~/hmmsearch
++path=/opt/anaconda1anaconda2anaconda3/bin/hmmsearch
+ piped=False
+ elim=10000
+ filters=True
+ 
+ [hmmbuild]
+-path=~/hmmbuild
++path=/opt/anaconda1anaconda2anaconda3/bin/hmmbuild
+ 
+ [jsonmerger]
+-path=~/seppJsonMerger.jar
++path=/opt/anaconda1anaconda2anaconda3/bin/seppJsonMerger.jar
+ 
+ [exhaustive]
+ strategy = centroid
diff --git a/recipes/sepp/build.sh b/recipes/sepp/build.sh
index 6d0bcb46ff649..925564b6363c6 100644
--- a/recipes/sepp/build.sh
+++ b/recipes/sepp/build.sh
@@ -1,19 +1,36 @@
 #!/bin/bash
 set -ex
 python setup.py config -c
+python setup.py upp -c
 
 # ensure SEPP's configuration file is at the correct location ...
 echo "${PREFIX}/share/sepp/sepp" > home.path
-cp home.path ${PREFIX}/lib/python*/site-packages/
+# ensure directory is created ... ($SP_DIR = Python's site-packages location, see https://docs.conda.io/projects/conda-build/en/stable/user-guide/environment-variables.html#environment-variables-set-during-the-build-process)
+mkdir -p $SP_DIR/
+# ... before we copy content into it
+cp -rv home.path $SP_DIR/
 mkdir -p $PREFIX/share/sepp/sepp
 # ... and holds correct path names
 mv -v sepp-package/sepp/default.main.config $PREFIX/share/sepp/sepp/main.config
+# copy upp config, as it's still needed
+cp ./.sepp/upp.config $PREFIX/share/sepp/sepp/upp.config
+
+# replace $PREFIX with /opt/anaconda1anaconda2anaconda3 for later replacement of concrete build PREFIX
+# note: can't apply a patch here, as upp.config is not part of upstream but gets generated during python setup
+if [ $unamestr == 'Linux' ];
+then
+	sed -i 's@'"$PREFIX"'@/opt/anaconda1anaconda2anaconda3@g' $PREFIX/share/sepp/sepp/upp.config
+elif [ $unamestr == 'Darwin' ];
+then
+	gsed -i 's@'"$PREFIX"'@/opt/anaconda1anaconda2anaconda3@g' $PREFIX/share/sepp/sepp/upp.config
+fi
 
 $PYTHON -m pip install . --ignore-installed --no-deps -vv
 
 # copy bundled binaries, but hmmer which should be provided by conda, into $PREFIX/bin/
 mkdir -p $PREFIX/bin/
 cp `cat $SRC_DIR/.sepp/main.config | grep "^path" -m 1 | grep -v "hmm" | cut -d "=" -f 2 | xargs dirname`/* $PREFIX/bin/
+cp `cat $SRC_DIR/.sepp/upp.config | grep "^path" -m 1 | grep -v "hmm" | cut -d "=" -f 2 | xargs dirname`/* $PREFIX/bin/
 
 # configure run-sepp.sh for qiime2 fragment-insertion
 mv -v sepp-package/run-sepp.sh $PREFIX/bin/run-sepp.sh
diff --git a/recipes/sepp/meta.yaml b/recipes/sepp/meta.yaml
index ca127b7df0891..980e754e11f8c 100644
--- a/recipes/sepp/meta.yaml
+++ b/recipes/sepp/meta.yaml
@@ -15,23 +15,25 @@ source:
       - nodeps.setup.py.patch
 
 build:
-  number: 1
-  skip: true  # [py != 37]
+  number: 4
+  run_exports:
+    - {{ pin_subpackage('sepp', max_pin="x") }}
 
 requirements:
   host:
-    - python
+    - python <=3.9
     - setuptools
     - pip
-    - dendropy
+    - dendropy <=4.5.1
     - openjdk
     - hmmer ==3.1b2
 
   run:
-    - python
-    - dendropy
+    - python <=3.9
+    - dendropy <=4.5.1
     - openjdk
     - hmmer ==3.1b2
+    - pasta
     # TODO: source bundled binaries as conda packages.
     # But pplacer / guppy are not available for OSX.
     # - pplacer
@@ -39,11 +41,10 @@ requirements:
 test:
   commands:
     - run_sepp.py --help
-    # for now, ignore "upp" 
-    #- run_upp.py --help
     - run-sepp.sh $PREFIX/share/sepp/ref/input_fragments.fasta testrun_tiny -a $PREFIX/share/sepp/ref/reference_alignment_tiny.fasta -t $PREFIX/share/sepp/ref/reference_phylogeny_tiny.nwk -r $PREFIX/share/sepp/ref/RAxML_info-reference-gg-raxml-bl.info -x 1 -b 1
     - grep "f__Halomonadaceae" testrun_tiny_placement.tog.relabelled.tre
     - grep "testseqd" testrun_tiny_placement.tog.relabelled.tre
+    - run_upp.py --help
 
 about:
   home: https://github.com/smirarab/sepp
diff --git a/recipes/seq2science/meta.yaml b/recipes/seq2science/meta.yaml
index bc09f1ed9a0a4..87aeaebd5f332 100644
--- a/recipes/seq2science/meta.yaml
+++ b/recipes/seq2science/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.0.3" %}
+{% set version = "1.2.2" %}
 
 package:
   name: seq2science
@@ -6,11 +6,13 @@ package:
 
 source:
   url: https://github.com/vanheeringen-lab/seq2science/archive/v{{ version }}.tar.gz
-  sha256: 7041d298dc7eca28c22d798620976474f09f35253f2900b89f864491bbade3fa
+  sha256: 5adbaf1689e8f302ec2d5c98f85a206b51f17d0e70e3fc0f16d872ae2099fdc5
 
 build:
   noarch: python
   number: 0
+  run_exports:
+    - {{ pin_subpackage("seq2science", max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/seqan3/fix_glibcxx_debug.patch b/recipes/seqan3/fix_glibcxx_debug.patch
new file mode 100644
index 0000000000000..529cc94d0f3f9
--- /dev/null
+++ b/recipes/seqan3/fix_glibcxx_debug.patch
@@ -0,0 +1,25 @@
+From 47b77ef92911ff1667f4487edb3961f0c28f407b Mon Sep 17 00:00:00 2001
+From: Simon Gene Gottlieb <simon@gottliebtfreitag.de>
+Date: Wed, 17 Jan 2024 12:09:11 +0100
+Subject: [PATCH] [FIX] Do not use constexpr vector with _GLIBCXX_DEBUG
+
+---
+ include/seqan3/core/platform.hpp | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/include/seqan3/core/platform.hpp b/include/seqan3/core/platform.hpp
+index 1fd92faa7..e0c7687fe 100644
+--- a/include/seqan3/core/platform.hpp
++++ b/include/seqan3/core/platform.hpp
+@@ -252,7 +252,7 @@ static_assert(sdsl::sdsl_version_major == 3, "Only version 3 of the SDSL is supp
+ #endif
+ 
+ //!\brief Our char literals returning std::vector should be constexpr if constexpr std::vector is supported.
+-#if defined(__cpp_lib_constexpr_vector) && __cpp_lib_constexpr_vector >= 201907L
++#if __cpp_lib_constexpr_vector >= 201907L && !defined(_GLIBCXX_DEBUG)
+ #    define SEQAN3_WORKAROUND_LITERAL constexpr
+ #else
+ #    define SEQAN3_WORKAROUND_LITERAL inline
+-- 
+2.43.0
+
diff --git a/recipes/seqan3/meta.yaml b/recipes/seqan3/meta.yaml
index 67a390e3f7b62..abb3a201426e9 100644
--- a/recipes/seqan3/meta.yaml
+++ b/recipes/seqan3/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "SeqAn3" %}
-{% set version = "3.2.0" %}
+{% set version = "3.3.0" %}
 
 package:
   name: {{ name|lower }}
@@ -7,11 +7,15 @@ package:
 
 source:
   url: https://github.com/seqan/{{ name|lower }}/releases/download/{{ version }}/seqan3-{{ version }}-Source.tar.xz
-  sha256: 2737a9dc20c1d728674010662c0c9452aabbb3d4a64725bda24f28335468994c
+  sha256: da2fb621268ebc52b9cc26087e96f4a94109db1f4f28d363d19c7c9cdbd788b1
+  patches:
+    - fix_glibcxx_debug.patch # Fix will be included in 3.4.0
 
 build:
   noarch: generic
-  number: 0
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('seqan3', max_pin="x") }}
 
 requirements:
   build:
diff --git a/recipes/seqchromloader/meta.yaml b/recipes/seqchromloader/meta.yaml
index 95e514a4ffd49..cdc9f86de6604 100644
--- a/recipes/seqchromloader/meta.yaml
+++ b/recipes/seqchromloader/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "seqchromloader" %}
-{% set version = "0.6.5" %}
+{% set version = "0.7.3" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: f7d348abcc0253ee3b90a3fde6a912104abc30ead3882d9f3053ba30fdc8ab0e
+  sha256: 8d9f666f3dddf4929349c8bd80586cdc2a3aac722f2cb1d2c8a1175a857f8d63
 
 build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install --no-deps --ignore-installed . -vv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
 
 requirements:
   host:
@@ -28,6 +30,7 @@ requirements:
     - pysam >=0.19.0
     - pytorch-lightning >=1.7.0,<1.8.0
     - pytorch >=1.10.0
+    - torchmetrics <=0.11.4
     - webdataset >=0.2.0
 
 test:
diff --git a/recipes/seqerakit/meta.yaml b/recipes/seqerakit/meta.yaml
new file mode 100644
index 0000000000000..1c05abe525a1c
--- /dev/null
+++ b/recipes/seqerakit/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "seqerakit" %}
+{% set version = "0.4.8" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/seqerakit-{{ version }}.tar.gz
+  sha256: 4d80b3e5230b1fbb29d191d36927fc59c696718447616cc9447cdf7bb5dafbbf
+
+build:
+  entry_points:
+    - seqerakit=seqerakit.cli:main
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+
+requirements:
+  host:
+    - python >=3.8,<4.0
+    - pip
+  run:
+    - python >=3.8,<4.0
+    - pyyaml >=6.0.0
+    - tower-cli >=0.9.0
+
+test:
+  imports:
+    - seqerakit
+  commands:
+    - pip check
+    - seqerakit --help
+  requires:
+    - pip
+
+about:
+  home: https://github.com/seqeralabs/seqera-kit
+  summary: Automate creation of Seqera Platform resources
+  license: Apache-2.0
+  license_file: LICENSE.txt
+
+extra:
+  recipe-maintainers:
+    - pinin4fjords
diff --git a/recipes/seqfu/build.sh b/recipes/seqfu/build.sh
index 44405d2e49c2b..0b5b964b47460 100644
--- a/recipes/seqfu/build.sh
+++ b/recipes/seqfu/build.sh
@@ -2,16 +2,45 @@
 
 set -euxo pipefail
 
+echo "--- NIM BUILD ---"
+nim --version
+echo "----------"
+
+
+
+echo " Setting environment variables"
+# Fix zlib
+export CFLAGS="$CFLAGS -I$PREFIX/include"
+export LDFLAGS="$LDFLAGS -L$PREFIX/lib"
+export CPATH=${PREFIX}/include
+
+echo "GXX: ${GXX:-'not set'}"
+echo "GCC: ${GCC:-'not set'}"
+echo "----------"
+
+
+
 if [[ $OSTYPE == "darwin"* ]]; then
+  echo "OSX"
   export HOME="/Users/distiller"
   export HOME=`pwd`
+else
+  # Trying to fix build when gcc or g++ are required
+  echo "LINUX: Patching makefile"
+  sed -i 's/gcc/gcc $(LDFLAGS)/g' Makefile
+  sed -i 's/g++/g++ $(LDFLAGS)/g' Makefile
+  sed -i 's/gcc/$(GCC)/g' Makefile
+  sed -i 's/g++/$(GXX)/g' Makefile
+  sed -i '1iGCC ?= gcc' Makefile
+  sed -i '1iGXX ?= g++' Makefile
 fi
 
 mkdir -p "$PREFIX"/bin
 
-echo "## Automatic build"
+echo "## Automatic build: install deps"
 #nimble build -y --verbose 
 nimble install -y --depsOnly
+echo "## Automatic build: make"
 make
 
 ./bin/seqfu version || true
diff --git a/recipes/seqfu/meta.yaml b/recipes/seqfu/meta.yaml
index b3cc977e2aa4d..13b66f49d86fe 100644
--- a/recipes/seqfu/meta.yaml
+++ b/recipes/seqfu/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "seqfu" %}
-{% set version = "1.17.1" %}
-{% set sha256 = "7d66fcd132ed9528e55d96edd81f83e99515a9ce813056b553ba9252e3175ceb" %}
+{% set version = "1.20.3" %}
+{% set sha256 = "1b287b99f3f1ac7045f4d551e781d6780ce168ba8e0a7bfaa0f5490f32e15938" %}
 
 package:
   name: {{ name }}
@@ -11,13 +11,17 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 2
+  number: 1
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   build:
     - {{ compiler('c') }}
-    - nim
+    - {{ compiler('cxx') }}
+    - nim >=2.0.0
     - make
+    - zlib
   host:
     - zlib
     - pcre
@@ -44,6 +48,8 @@ about:
     Tools to interleave and deinterleave, to calculate stats, and extract
     portions of sequence datasets.
 extra:
+  additional-platforms:
+    - linux-aarch64
   recipe-maintainers:
     - telatin
   identifiers:
diff --git a/recipes/seqhax/build.sh b/recipes/seqhax/build.sh
index 23137a4f9b2d1..7a256b55793b1 100644
--- a/recipes/seqhax/build.sh
+++ b/recipes/seqhax/build.sh
@@ -1,5 +1,5 @@
 #!/bin/bash
-
 mkdir build && cd build
-cmake .. -DCMAKE_INSTALL_PREFIX=${PREFIX}
+cmake .. -DCMAKE_INSTALL_PREFIX="${PREFIX}"
+make
 make install
diff --git a/recipes/seqhax/meta.yaml b/recipes/seqhax/meta.yaml
index a9b911bd2fb1e..17216739a90fd 100644
--- a/recipes/seqhax/meta.yaml
+++ b/recipes/seqhax/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.7.2" %}
-{% set sha256 = "fb6a120406628d3338602eb38eca41d0ef7cb6d268750287e7da17004319cf51" %}
+{% set version = "0.8.6" %}
+{% set sha256 = "3b72b30abb393e82350132317b0864609b340b4f8d11e459b9928ecc172536df" %}
 
 package:
   name: seqhax
@@ -10,8 +10,10 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 5
+  number: 0
   skip: true  # [not linux]
+  run_exports:
+    - {{ pin_subpackage('seqhax', max_pin="x") }}
 
 requirements:
   build:
@@ -21,12 +23,15 @@ requirements:
     - cmake
   host:
     - zlib
+    - htslib
   run:
     - zlib
+    - htslib
 
 test:
   commands:
-    - seqhax 2>&1 | grep 'where PROGRAM is one of'  # the help string
+    - seqhax 2>&1 | grep 'where PROGRAM is one of'
+    - htshax 2>&1 | grep 'where PROGRAM is one of'
 
 about:
   home: https://github.com/kdmurray91/seqhax
diff --git a/recipes/seqkit/meta.yaml b/recipes/seqkit/meta.yaml
index 000a07225b456..82e52aff48227 100644
--- a/recipes/seqkit/meta.yaml
+++ b/recipes/seqkit/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "2.5.0" %}
+{% set version = "2.8.2" %}
 
 package:
   name: seqkit
@@ -6,15 +6,19 @@ package:
 
 source:
   url: https://github.com/shenwei356/seqkit/releases/download/v{{ version }}/seqkit_darwin_amd64.tar.gz # [osx]
-  md5: 80e2ae18b7020485b4be60ff62269681 # [osx]
+  md5: 03b13956b7e3ef1678db591a79eb68ed # [osx]
 
   url: https://github.com/shenwei356/seqkit/releases/download/v{{ version }}/seqkit_linux_amd64.tar.gz # [linux]
-  md5: 4b844c82af192d64b1ad9c61c1a5bb7d # [linux]
+  md5: 67220b508f3f81c2c8697e6534eed440 # [linux]
+
+  url: https://github.com/shenwei356/seqkit/releases/download/v{{ version }}/seqkit_linux_arm64.tar.gz # [aarch64]
+  md5: b83b021850c9447cfc8e0d5751b7be99 # [aarch64]
 
 build:
   number: 0
   skip: False
-
+  run_exports:
+    - {{ pin_subpackage("seqkit", max_pin="x.x") }}
 test:
   commands:
     - seqkit version --help
@@ -25,6 +29,8 @@ about:
   license: MIT
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   skip-lints:
     - should_be_noarch_generic
     - should_not_be_noarch_source
diff --git a/recipes/seqlogo/meta.yaml b/recipes/seqlogo/meta.yaml
index 9e2af80d8b307..b23fe0d1fe1bc 100755
--- a/recipes/seqlogo/meta.yaml
+++ b/recipes/seqlogo/meta.yaml
@@ -1,7 +1,5 @@
 {% set name = "seqlogo" %}
-
-{% set version = "5.29.8" %}
-
+{% set version = "5.29.9" %}
 
 package:
   name: "{{ name }}"
@@ -9,18 +7,20 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 22f3107aa6ae1097d11f39d70a85f6a8371fe99c2e93feb0243c3aa6c1edd4bc
-
+  sha256: c521f83ccb54bfa031d0ea96d12133913f8b96c0874637d9bc55cb6b24c3187c
 
 build:
   noarch: python
   number: 0
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage('seqlogo', max_pin="x") }}
 
 requirements:
   host:
     - pip
     - python >=3
+    - pytest
   run:
     - numpy
     - pandas
@@ -33,11 +33,12 @@ test:
     - seqlogo
 
 about:
-  home: https://github.com/betteridiot/seqlogo
-  license: BSD
+  home: "https://github.com/betteridiot/seqlogo"
+  license: "BSD-3-Clause"
   license_family: BSD
   license_file: LICENSE
   summary: "Python port of the R Bioconductor `seqlogo` package"
+  dev_url: "https://github.com/betteridiot/seqlogo"
 
 extra:
   recipe-maintainers:
diff --git a/recipes/seqnado/meta.yaml b/recipes/seqnado/meta.yaml
new file mode 100644
index 0000000000000..96fbd7eb7d54e
--- /dev/null
+++ b/recipes/seqnado/meta.yaml
@@ -0,0 +1,67 @@
+{% set name = "seqnado" %}
+{% set version = "0.5.1" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/seqnado-{{ version }}.tar.gz
+  sha256: 3202446e4b1fdb046b5b79c30e5558e84fb05b7b7a507d0c9bfaf279fba5effa
+
+
+build:
+  number: 1
+  noarch: python
+  script_env:
+    - SETUPTOOLS_SCM_PRETEND_VERSION={{ version }}
+  script: {{ PYTHON }} -m pip install . --no-deps -vvv
+  entry_points:
+    - seqnado = seqnado.cli:cli_pipeline
+    - seqnado-design = seqnado.cli:cli_design
+    - seqnado-config = seqnado.cli:cli_config
+  run_exports:
+    - {{ pin_subpackage('seqnado', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.10
+    - setuptools >=61.0
+    - wheel
+    - setuptools-scm >=6.2
+    - pip
+  run:
+    - click
+    - cookiecutter
+    - drmaa
+    - pandas
+    - pulp <=2.7.0
+    - pydantic
+    - python >=3.10
+    - pyyaml
+    - seaborn
+    - setuptools-scm
+    - singularity
+    - snakemake >=8, <9
+    - snakemake-wrapper-utils
+    - tracknado
+    - wget
+
+test:
+  imports:
+    - seqnado
+  commands:
+    - seqnado --help
+    - seqnado-design --help
+    - seqnado-config --help
+
+about:
+  home: https://alsmith151.github.io/SeqNado/
+  summary: Pipelines for genomics analysis
+  license: GPL-3.0-or-later
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - alsmith151
+    - CChahrour
diff --git a/recipes/seqscreen/meta.yaml b/recipes/seqscreen/meta.yaml
index 4633ef222e344..9c8cbdf6eb2a8 100644
--- a/recipes/seqscreen/meta.yaml
+++ b/recipes/seqscreen/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "4.2" %}
+{% set version = "4.3" %}
 
 package:
   name: seqscreen
@@ -6,12 +6,13 @@ package:
 
 source:
   url: 'https://gitlab.com/treangenlab/seqscreen/-/archive/v{{version}}/seqscreen-v{{version}}.tar.gz'  
-  sha256: 16bd9f647360449e1d50fad938a1958b4dae7429a373afca531a3b64178e2659                                 
+  sha256: c859657e965e9898bec702c7c1c4624478cbe640219c21a0139af9dd137c5d3a                                 
 
 build:
   noarch: generic
   number: 0
-
+  run_exports:
+    - {{ pin_subpackage("seqscreen", max_pin="x.x") }}
 requirements:
   run:
     - scipy
diff --git a/recipes/seqsero2/meta.yaml b/recipes/seqsero2/meta.yaml
index 2ee2a03b296e5..577b4e289f04a 100644
--- a/recipes/seqsero2/meta.yaml
+++ b/recipes/seqsero2/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "SeqSero2" %}
-{% set version = "1.2.1" %}
-{% set sha256 = "911b3f31ed35b7ac421001ab739782895c479f1e3a733ad17210069c8b7011ff" %}
+{% set version = "1.3.1" %}
+{% set sha256 = "5fa2a0957d053f36061fa76f5a4de6ea3d33b5307f4c122dc4cdf807d1c3514d" %}
 
 package:
   name: '{{ name | lower }}'
@@ -11,9 +11,11 @@ source:
   sha256: '{{ sha256 }}'
 
 build:
-  number: 0
+  number: 1
   noarch: python
-  script: python -m pip install --no-deps --ignore-installed .
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  run_exports:
+    - {{ pin_subpackage('seqsero2', max_pin="x") }}
 
 requirements:
   host:
@@ -26,10 +28,11 @@ requirements:
     - samtools >=1.8
     - bedtools =2.17.0
     - sra-tools >=2.8.0
-    - spades >=3.9.0
+    - spades >=3.15.5
     - sra-tools >=2.8.0
     - salmid =0.1.23
     - bwa >=0.7.12
+    - seqtk >=1.3
 test:
   commands:
     - SeqSero2_package.py -h
@@ -38,7 +41,7 @@ test:
 
 about:
   home: https://github.com/denglab/{{ name }}
-  license: GPLv2
+  license: GPL-2.0-or-later
   license_family: GPL
   license_file: 'LICENSE'
   summary: Salmonella serotype prediction from genome sequencing data
diff --git a/recipes/seqsizzle/LICENSE.md b/recipes/seqsizzle/LICENSE.md
new file mode 100644
index 0000000000000..fe6b9036ba181
--- /dev/null
+++ b/recipes/seqsizzle/LICENSE.md
@@ -0,0 +1,662 @@
+                    GNU AFFERO GENERAL PUBLIC LICENSE
+                       Version 3, 19 November 2007
+
+ Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/>
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+                            Preamble
+
+  The GNU Affero General Public License is a free, copyleft license for
+software and other kinds of works, specifically designed to ensure
+cooperation with the community in the case of network server software.
+
+  The licenses for most software and other practical works are designed
+to take away your freedom to share and change the works.  By contrast,
+our General Public Licenses are intended to guarantee your freedom to
+share and change all versions of a program--to make sure it remains free
+software for all its users.
+
+  When we speak of free software, we are referring to freedom, not
+price.  Our General Public Licenses are designed to make sure that you
+have the freedom to distribute copies of free software (and charge for
+them if you wish), that you receive source code or can get it if you
+want it, that you can change the software or use pieces of it in new
+free programs, and that you know you can do these things.
+
+  Developers that use our General Public Licenses protect your rights
+with two steps: (1) assert copyright on the software, and (2) offer
+you this License which gives you legal permission to copy, distribute
+and/or modify the software.
+
+  A secondary benefit of defending all users' freedom is that
+improvements made in alternate versions of the program, if they
+receive widespread use, become available for other developers to
+incorporate.  Many developers of free software are heartened and
+encouraged by the resulting cooperation.  However, in the case of
+software used on network servers, this result may fail to come about.
+The GNU General Public License permits making a modified version and
+letting the public access it on a server without ever releasing its
+source code to the public.
+
+  The GNU Affero General Public License is designed specifically to
+ensure that, in such cases, the modified source code becomes available
+to the community.  It requires the operator of a network server to
+provide the source code of the modified version running there to the
+users of that server.  Therefore, public use of a modified version, on
+a publicly accessible server, gives the public access to the source
+code of the modified version.
+
+  An older license, called the Affero General Public License and
+published by Affero, was designed to accomplish similar goals.  This is
+a different license, not a version of the Affero GPL, but Affero has
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+                     END OF TERMS AND CONDITIONS
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+            How to Apply These Terms to Your New Programs
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+  If you develop a new program, and you want it to be of the greatest
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+Also add information on how to contact you by electronic and paper mail.
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+get its source.  For example, if your program is a web application, its
+interface could display a "Source" link that leads users to an archive
+of the code.  There are many ways you could offer source, and different
+solutions will be better for different programs; see section 13 for the
+specific requirements.
+
+  You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU AGPL, see
+<https://www.gnu.org/licenses/>.
+
diff --git a/recipes/seqsizzle/build.sh b/recipes/seqsizzle/build.sh
new file mode 100644
index 0000000000000..397f07f5695be
--- /dev/null
+++ b/recipes/seqsizzle/build.sh
@@ -0,0 +1,7 @@
+#!/bin/bash -euo
+
+# Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
+# We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
+export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="$(pwd)/.cargo"
+
+RUST_BACKTRACE=1 cargo install --verbose --path . --root $PREFIX
diff --git a/recipes/seqsizzle/meta.yaml b/recipes/seqsizzle/meta.yaml
new file mode 100644
index 0000000000000..04e45be842289
--- /dev/null
+++ b/recipes/seqsizzle/meta.yaml
@@ -0,0 +1,40 @@
+{% set version = "0.1.4" %}
+{% set sha256 = "8c8fd6ff9c3752676fa6673fe3cdab32220033c0b5790828740430f8890f20e3" %}
+
+package:
+  name: seqsizzle
+  version: {{ version }}
+
+source:
+  url: https://github.com/ChangqingW/SeqSizzle/archive/v{{version}}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('seqsizzle', max_pin="x") }}
+
+requirements:
+  build:
+    - {{ compiler("c") }}
+    - rust
+    - pkg-config
+  host:
+    - xz
+    - zlib
+    - bzip2
+  run:
+    - xz
+    - zlib
+    - bzip2
+
+test:
+  commands:
+    - seqsizzle -h
+
+about:
+  home: https://github.com/ChangqingW/SeqSizzle
+  license: AGPL-3.0-or-later
+  licence_family: AGPL
+  license_file: LICENSE.md
+  summary: A pager for viewing FASTQ files with fuzzy adaptor matching and coloring.
diff --git a/recipes/seqstr/meta.yaml b/recipes/seqstr/meta.yaml
new file mode 100644
index 0000000000000..ce31fc8849ef6
--- /dev/null
+++ b/recipes/seqstr/meta.yaml
@@ -0,0 +1,38 @@
+package:
+  name: seqstr
+  version: 0.1.0
+
+source:
+  url: https://github.com/jzhoulab/Seqstr/archive/refs/tags/v0.1.0.tar.gz 
+  sha256: ddef0e2fce2f3c262bf23e16a45bf65886228bd20be314a05842f7f72bd9a705
+
+build:
+  number: 0
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage('seqstr', max_pin="x.x") }} 
+  script: {{ PYTHON }} -m pip install . -vv
+
+requirements:
+  host:
+    - python >=3.7
+    - pip >=21.2.2
+  run:
+    - python >=3.7
+    - requests >=2.25.0
+    - pyfaidx >=0.6.3
+
+about:
+  home: https://github.com/jzhoulab/Seqstr
+  license: MIT
+  summary: Lightweight tool to compile simple string input into long genomic sequences
+  description: |
+    Seqstr is designed to provide a concise and flexible way to specify long genomic sequences that can be used for downstream analysis. For example, it can be used by web servers to avoid transferring long genomic sequences. Seqstr is also a format specification, which can be implemented in different languages. We also provide a test suite for verifying an implementation.
+
+extra:
+  recipe-maintainers:
+    - shichenlai
+
+test:
+  imports:
+    - seqstr
diff --git a/recipes/seqtk/meta.yaml b/recipes/seqtk/meta.yaml
index df6b2e5bb7c06..6425b4714964d 100644
--- a/recipes/seqtk/meta.yaml
+++ b/recipes/seqtk/meta.yaml
@@ -12,7 +12,9 @@ source:
     - 0001-makefile.patch
 
 build:
-  number: 1
+  number: 2
+  run_exports:
+    - {{ pin_subpackage('seqtk', max_pin="x.x") }}
 
 requirements:
   build:
@@ -33,5 +35,7 @@ about:
   summary: Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:seqtk
diff --git a/recipes/sequali/meta.yaml b/recipes/sequali/meta.yaml
new file mode 100644
index 0000000000000..c4a4b2dcc4435
--- /dev/null
+++ b/recipes/sequali/meta.yaml
@@ -0,0 +1,53 @@
+{% set name = "sequali" %}
+{% set version = "0.9.1" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: e47d95c3ae968532465c71a7adbe639f57944e08acefac71ee53e0a35cdc887a
+
+build:
+  number: 0
+  entry_points:
+    - sequali=sequali.__main__:main
+    - sequali-report=sequali.__main__:sequali_report
+  run_exports:
+    - {{ pin_subpackage('sequali', max_pin="x.x") }}
+  script: "{{ PYTHON }} -m pip install . -vv"
+
+
+requirements:
+  build:
+    - "{{ compiler('c') }}"
+    - pip
+  host:
+    - python
+  run:
+    - pygal >=3.0.4
+    - python
+    - tqdm
+    - xopen >=2.0.0
+
+test:
+  imports:
+    - sequali
+  commands:
+    - sequali --help
+    - sequali-report --help
+
+about:
+  home: "https://github.com/rhpvorderman/sequali"
+  license: "GNU Affero General Public v3 or later (AGPLv3+)"
+  license_family: AGPL
+  license_file: LICENSE
+  summary: "Fast sequencing quality metrics"
+  doc_url: "sequali.readthedocs.io"
+  dev_url: "https://github.com/rhpvorderman/sequali"
+
+extra:
+  recipe-maintainers:
+    - rhpvorderman
+
diff --git a/recipes/sequana/meta.yaml b/recipes/sequana/meta.yaml
index 3938ca7e0f70c..8d67e0ad64f7a 100644
--- a/recipes/sequana/meta.yaml
+++ b/recipes/sequana/meta.yaml
@@ -1,14 +1,14 @@
-{% set version = "0.15.2" %}
-{% set sha = "47831353918ebc06cf21c73f0c68fd68ed4d84c6d10389dad20d3759cdab0b96" %}
+{% set version = "0.16.4" %}
+{% set sha256 = "d2624dd09dd04a7d27a38bbfb90e8ae5bf554bdc2e0b1e6a9484ab979a56e1ea" %}
 {% set name = "sequana" %}
 
 package:
-  name: {{ name }} 
+  name: {{ name }}
   version: {{ version }}
 
 source:
   url: https://pypi.io/packages/source/s/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: {{ sha }}
+  sha256: {{ sha256 }}
 
 build:
   preserve_egg_dir: True
@@ -19,11 +19,14 @@ build:
     - sequana_taxonomy=sequana.scripts.taxonomy:main
     - sequana_coverage=sequana.scripts.coverage:main
     - sequana_start_pipeline=sequana.scripts.start_pipeline:main
-  script: "{{ PYTHON }} -m pip install . -vv"
+    - sequana_substractor=sequana.scripts.substractor:main
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('sequana', max_pin="x") }}
 
 requirements:
   host:
-    - python
+    - python >=3.8
     - pip
   run:
     - adjusttext
@@ -35,6 +38,7 @@ requirements:
     - colormap
     - cookiecutter <2
     - cython
+    - deprecated
     - docutils
     - easydev >=0.11.1
     - gseapy
@@ -50,10 +54,12 @@ requirements:
     - psutil
     - pykwalify
     - pysam >=0.16
-    - python
+    - python >=3.8
+    - rich-click
     - ruamel.yaml >=0.16.0
     - scikit-learn
     - scipy
+    - selenium
     - snakemake-minimal >=7.16
     - seaborn
     - statsmodels
@@ -92,10 +98,12 @@ test:
 
 about:
   home: "http://sequana.readthedocs.io/"
-  license: "BSD 3-clause"
+  license: "BSD-3-Clause"
   summary: "A set of standalone application and snakemake pipelines dedicated to NGS (new generation sequencing) analysis"
   license_family: BSD
+  license_file: LICENSE
   doc_url: "https://sequana.readthedocs.io"
+  dev_url: https://github.com/sequana/sequana
 
 extra:
   container:
diff --git a/recipes/sequencetools/meta.yaml b/recipes/sequencetools/meta.yaml
index ca157c582926a..bc3b6d6b88426 100644
--- a/recipes/sequencetools/meta.yaml
+++ b/recipes/sequencetools/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.5.3" %}
+{% set version = "1.5.3.2" %}
 
 package:
   name: sequencetools
@@ -6,23 +6,25 @@ package:
 
 source:
   - url: https://github.com/stschiff/sequenceTools/releases/download/v{{ version }}/genoStats-linux # [linux]
-    md5: 9967a7ae908fe4f9609e85171d7f81ae # [linux]
+    md5: 50fd1595be89c375e0c0d86353b68aab # [linux]
   - url: https://github.com/stschiff/sequenceTools/releases/download/v{{ version }}/pileupCaller-linux # [linux]
-    md5: 3aa3e5c41c7a26f59f669d8b2a91eeee # [linux]
+    md5: 7e9e44f223f3b23283b2e846ae3eff92 # [linux]
   - url: https://github.com/stschiff/sequenceTools/releases/download/v{{ version }}/vcf2eigenstrat-linux # [linux]
-    md5: 190d13ea03bb45411afc71a4fd23ad21 # [linux]
+    md5: 88fe4a59b5a2df97794f67d7a4274e45 # [linux]
   - url: https://github.com/stschiff/sequenceTools/releases/download/v{{ version }}/genoStats-macOS # [osx]
-    md5: d267065a6d751df5278dc087329a6e08 # [osx]
+    md5: d4ad978d5956b02ffac9d91aa7779cf8 # [osx]
   - url: https://github.com/stschiff/sequenceTools/releases/download/v{{ version }}/pileupCaller-macOS # [osx]
-    md5: ae518ace450cee1f819aa28cd415857a # [osx]
+    md5: d1e10117bb7ef10c7f9bd43bd90c86af # [osx]
   - url: https://github.com/stschiff/sequenceTools/releases/download/v{{ version }}/vcf2eigenstrat-macOS # [osx]
-    md5: 7f22cb54d61af573a993dbd6aade17d5 # [osx]
+    md5: 015ce6ca8b99405f626665d4e9246ae1 # [osx]
 
 build:
-  number: 1
+  number: 0
   script:
     - "mkdir -p $PREFIX/bin"
     - "for TOOL in genoStats pileupCaller vcf2eigenstrat; do mv $TOOL-* $PREFIX/bin/$TOOL; chmod u+x $PREFIX/bin/$TOOL; done"
+  run_exports:
+    - {{ pin_subpackage("sequencetools", max_pin=None) }}
 
 
 requirements:
diff --git a/recipes/sequenoscope/meta.yaml b/recipes/sequenoscope/meta.yaml
new file mode 100644
index 0000000000000..59a8abbf2222c
--- /dev/null
+++ b/recipes/sequenoscope/meta.yaml
@@ -0,0 +1,48 @@
+{% set version = "0.0.5" %}
+
+package:
+    name: sequenoscope
+    version: {{ version }}
+
+source:
+    url: https://github.com/phac-nml/sequenoscope/archive/v{{ version }}.tar.gz
+    sha256: aac98d2ab286da78c9c4b621e52cac2a16fd6ea3d1200b05861bf82e3fb49701   
+
+build:
+    number: 1
+    noarch: python
+    run_exports:
+      - {{ pin_subpackage("sequenoscope", max_pin="x.x") }}
+    script: python -m pip install .
+
+requirements:
+    host:
+        - python
+        - pip
+    run:
+        - python >=3.7.12,<4
+        - {{ pin_compatible('pandas') }}
+        - samtools >=1.6
+        - pysam >=0.16.0
+        - minimap2 >=2.26
+        - mash >=2.3
+        - fastp >=0.22.0,<=0.23.2
+        - seqtk >=1.4
+        - plotly >=5.16.1
+        - biopython >=1.7
+        - scipy >=1.7.3
+        - six >=1.14.0
+        - {{ pin_compatible('numpy') }}
+test:
+    import:
+        - sequenoscope
+    commands:
+        - "sequenoscope --help"
+
+
+about:
+    license: Apache-2.0
+    summary: sequenoscope is a versatile bioinformatic pipeline for the analysis of sequencing data.
+    author: Abdallah Meknas, James Robertson
+    home: https://github.com/phac-nml/sequenoscope
+    dev_url: https://github.com/phac-nml/sequenoscope
diff --git a/recipes/sequip/meta.yaml b/recipes/sequip/meta.yaml
index 63f6ee693be3d..c1ada284f8d1c 100644
--- a/recipes/sequip/meta.yaml
+++ b/recipes/sequip/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "sequip" %}
-{% set version = "0.09" %}
+{% set version = "0.10" %}
 
 package:
   name: {{ name }}
@@ -7,11 +7,13 @@ package:
 
 source:
   - url: https://github.com/nawrockie/{{ name }}/archive/refs/tags/{{ name }}-{{ version }}.tar.gz
-    sha256: b6d44c2453eb92276e2f67584bf9f171fc5e5e5ffeec2f718cea5e9499adde2d
+    sha256: 6920717500026e1b37b46f32fcba07b659afc120519f7bda970da6e30af74d75
 
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('sequip', max_pin="x.x") }}
 
 requirements:
   run:
diff --git a/recipes/seqverify/build.sh b/recipes/seqverify/build.sh
index 0f82f2cdb37df..d264f97e6ebe0 100644
--- a/recipes/seqverify/build.sh
+++ b/recipes/seqverify/build.sh
@@ -1,8 +1,11 @@
 #!bin/bash
 mkdir $PREFIX/bin
 
-
 chmod +x seqverify
 cp seqverify $PREFIX/bin
 cp seqver_functions.py $PREFIX/bin
-cp seqver_transgenes.py $PREFIX/bin
+cp seqver_plots.py $PREFIX/bin
+cp seqver_lofFinder.py $PREFIX/bin
+cp seqver_gtf.py $PREFIX/bin
+cp seqver_genomeupdate.py $PREFIX/bin
+
diff --git a/recipes/seqverify/meta.yaml b/recipes/seqverify/meta.yaml
index f353177a55934..44980311a7974 100644
--- a/recipes/seqverify/meta.yaml
+++ b/recipes/seqverify/meta.yaml
@@ -1,31 +1,45 @@
-{% set version = "0.1.0" %}
-
-package:
-  name: seqverify
-  version: {{ version }}
-
-source:
-  url: https://github.com/mpiersonsmela/SeqVerify/archive/refs/tags/prerelease.tar.gz
-  sha256: 75d479d485a27e4072ac272fd0f690a7b557bdb56a27ddd377736823e5297b94
-
-build:
-  noarch: generic
-  number: 0
-
-requirements:
-  run:
-    - python >=3.9
-    - bwa
-    - samtools
-    - kraken2
-    - regex
-    - cnvpytor 
-
-test:
-  commands:
-    - seqverify -h
-
-about:
-  home: https://github.com/mpiersonsmela/SeqVerify
-  license: GPL-3.0
-  summary: Seqverify analyzes whole genome sequencing data for gene-editing verification.
+{% set version = "1.2.1" %}
+
+package:
+  name: seqverify
+  version: {{ version }}
+
+source:
+  url: https://github.com/mpiersonsmela/SeqVerify/archive/refs/tags/v1.2.1.tar.gz
+  sha256: 5c0f3080d64b99dff593276e1efe362b60c435f7e08b6a16ed8588f7dd5b5bf4
+
+build:
+  noarch: generic
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('seqverify', max_pin="x.x") }}
+
+requirements:
+  run:
+    - bcftools
+    - blast
+    - bwa
+    - cnvpytor
+    - htslib
+    - idna
+    - igv =2.13.2
+    - igv-reports
+    - kraken2
+    - matplotlib-base
+    - numpy
+    - openjdk =11
+    - pip
+    - python =3.10
+    - samtools
+    - scipy
+    - snpeff =5.1
+    - snpsift =4.3.1t
+
+test:
+  commands:
+    - seqverify -h
+
+about:
+  home: https://github.com/mpiersonsmela/SeqVerify
+  license: GPL-3.0
+  summary: Seqverify analyzes whole genome sequencing data for gene-editing verification.
diff --git a/recipes/seqwish/meta.yaml b/recipes/seqwish/meta.yaml
index 14eeca808d85c..61ad99d0a7389 100644
--- a/recipes/seqwish/meta.yaml
+++ b/recipes/seqwish/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "seqwish" %}
-{% set version = "0.7.9" %}
+{% set version = "0.7.10" %}
 
 package:
   name: "{{ name }}"
@@ -7,11 +7,13 @@ package:
 
 source:
   url: https://github.com/ekg/{{ name }}/releases/download/v{{ version }}/{{ name }}-v{{ version }}.tar.gz
-  sha256: 1ca7ebf02a35ad147c8a2b81f087aaba2deb878fec7acb4deb9f14e932e89d36
+  sha256: 133b32c9c99caf44eba955b74bae338681da78300e4b21269e07475f88c88b29
 
 build:
   skip: True  # [osx]
-  number: 2
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
+  number: 0
 
 requirements:
   build:
diff --git a/recipes/sercol/meta.yaml b/recipes/sercol/meta.yaml
index 47cefcfa8bf95..cedf8663759d9 100644
--- a/recipes/sercol/meta.yaml
+++ b/recipes/sercol/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "sercol" %}
-{% set version = "0.1.4" %}
+{% set version = "1.0.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: eab962cf60bccb3c500b0eac7f51e865efefc4203d0323da3c4d5414e0b4e577
+  sha256: 6507f5efcee4596eb77c45f1580ff562533ef5d115918a6a28bc4eac09ec191c
 
 build:
   number: 0
   noarch: python
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('sercol', max_pin="x") }}
 
 requirements:
   host:
@@ -30,7 +32,8 @@ test:
 
 about:
   home: "https://github.com/openvax/sercol"
-  license: Apache Software
+  license: Apache-2.0
+  license_file: LICENSE
   license_family: APACHE
   summary: "Rich collection class with grouping and filtering helpers"
 
diff --git a/recipes/serotypefinder/build.sh b/recipes/serotypefinder/build.sh
index f86371d384563..bdcf3a4a8221e 100644
--- a/recipes/serotypefinder/build.sh
+++ b/recipes/serotypefinder/build.sh
@@ -5,32 +5,23 @@ mkdir -p ${PREFIX}/bin
 chmod +x serotypefinder.py
 cp serotypefinder.py ${PREFIX}/bin/serotypefinder
 
+# create folder for database download
+target=${PREFIX}/share/${PKG_NAME}-${PKG_VERSION}
+mkdir -p ${target}/db/
+touch ${target}/db/.empty
+
+# copy script to download database
+cp ${RECIPE_DIR}/download-db.sh ${PREFIX}/bin
+chmod +x ${PREFIX}/bin/download-db.sh
+
 # copy script to download database
 chmod +x ${RECIPE_DIR}/update-serotypefinder-db.sh
 cp ${RECIPE_DIR}/update-serotypefinder-db.sh ${PREFIX}/bin/update-serotypefinder-db
 
-# Grab latest database
-# The SerotypeFinder database is not tagged and versioned, but it's also not updated
-# very often (~7 commits in 5 years). 25ddd141d245db6382ca5876f7c7ddd0288aeb30 is the
-# latest commit as of 2021/07/22. A script is provided to allow users to update in the
-# event an update is made.
-mkdir database/
-git clone https://bitbucket.org/genomicepidemiology/serotypefinder_db.git database/
-cd database/
-git checkout 25ddd141d245db6382ca5876f7c7ddd0288aeb30
-python3 INSTALL.py
-echo "25ddd141d245db6382ca5876f7c7ddd0288aeb30" > serotypefinder-db-commit.txt
-cd ..
-
-# Path for database
-outdir=${PREFIX}/share/${PKG_NAME}-${PKG_VERSION}-${PKG_BUILDNUM}
-mkdir -p ${outdir}/
-mv ./database/ ${outdir}/
-
 # set SEROTYPEFINDER_DB variable on env activation
 mkdir -p ${PREFIX}/etc/conda/activate.d ${PREFIX}/etc/conda/deactivate.d
 cat <<EOF >> ${PREFIX}/etc/conda/activate.d/serotypefinder.sh
-export SEROTYPEFINDER_DB=${outdir}/database/
+export SEROTYPEFINDER_DB=${target}/db/
 EOF
 
 cat <<EOF >> ${PREFIX}/etc/conda/deactivate.d/serotypefinder.sh
diff --git a/recipes/serotypefinder/download-db.sh b/recipes/serotypefinder/download-db.sh
new file mode 100644
index 0000000000000..74296aca0dcd7
--- /dev/null
+++ b/recipes/serotypefinder/download-db.sh
@@ -0,0 +1,21 @@
+#!/usr/bin/env bash
+
+echo "Downloading SerotypeFinder database to ${SEROTYPEFINDER_DB}..."
+
+# Grab latest database
+# The SerotypeFinder database is not tagged and versioned, but it's also not updated
+# very often (~7 commits in 5 years). ada62c62a7fa74032448bb2273d1f7045c59fdda is the
+# latest commit as of 2022/05/16. A script is provided to allow users to update in the
+# event an update is made.
+
+cd ${SEROTYPEFINDER_DB}
+# download SerotypeFinder database
+git clone https://bitbucket.org/genomicepidemiology/serotypefinder_db.git db_serotypefinder
+cd db_serotypefinder
+python3 INSTALL.py
+git rev-parse HEAD > serotypefinder-db-commit.txt
+cd ..
+
+echo "SerotypeFinder database is downloaded."
+
+exit 0
diff --git a/recipes/serotypefinder/meta.yaml b/recipes/serotypefinder/meta.yaml
index ae555ddfebb03..9bbaafbbaa65d 100644
--- a/recipes/serotypefinder/meta.yaml
+++ b/recipes/serotypefinder/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "SerotypeFinder" %}
-{% set version = "2.0.1" %}
+{% set version = "2.0.2" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,23 +7,27 @@ package:
 
 source:
   url: https://bitbucket.org/genomicepidemiology/{{ name|lower }}/get/{{ version }}.tar.gz
-  sha256: b937c0d85085f77f750665f28181656e5fb689e0d19a920ff7064f2ab4463783
+  sha256: c6e13a3ef91c2f137bad99925a6b64e31330b768a4d8214bb767a51b3ea11446
   patches:
-   - database_path.patch
+    - database_path.patch
 
 build:
-  number: 0
+  number: 1
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('serotypefinder', max_pin="x") }}
 
 requirements:
+  host:
+    - python >=3.8
   run:
-    - biopython =1.73
+    - biopython >=1.79
     - blast >=2.8.1
     - cgecore >=1.5.5
     - kma
-    - python >=3
-    - tabulate >=0.7.7
-
+    - python >=3.8
+    - tabulate >=0.8.9
+    - git
 
 test:
   commands:
diff --git a/recipes/sevenbridges-python/meta.yaml b/recipes/sevenbridges-python/meta.yaml
index ad3d7aadb8e07..43ffddea1b422 100644
--- a/recipes/sevenbridges-python/meta.yaml
+++ b/recipes/sevenbridges-python/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "2.9.2" %}
-{% set sha256 = "716c7d883a3aee9b45d5c668a37fc886a3871c316e0ad82559aad15e836fcb41" %}
+{% set version = "2.11.0" %}
+{% set sha256 = "0a20b2f75cc9110adad747c0cfe7b7389b1c978008a77fae942ab66614f32534" %}
 
 package:
   name: sevenbridges-python
@@ -12,7 +12,9 @@ source:
 build:
   noarch: python
   number: 0
-  script: touch requirements.txt && {{PYTHON}} -m pip install --no-deps --ignore-installed --no-cache-dir .
+  script: touch requirements.txt && {{ PYTHON }} -m pip install --no-deps --no-build-isolation --no-cache-dir . -vvv
+  run_exports:
+    - {{ pin_subpackage('sevenbridges-python', max_pin="x") }}
 
 requirements:
   host:
@@ -45,7 +47,7 @@ test:
 about:
   home: https://github.com/sbg/sevenbridges-python
   license: Apache-2.0
-  license_family: Apache
+  license_family: APACHE
   license_file: LICENSE
   summary: SBG API python client bindings
   description: sevenbridges-python is a Python library that provides an interface for the Seven Bridges Platform the Cancer
diff --git a/recipes/python-edlib/build.sh b/recipes/severus/build.sh
similarity index 81%
rename from recipes/python-edlib/build.sh
rename to recipes/severus/build.sh
index 3786386a73c83..5227f51eca79f 100644
--- a/recipes/python-edlib/build.sh
+++ b/recipes/severus/build.sh
@@ -1,3 +1,3 @@
 #!/bin/bash
 
-$PYTHON setup.py install --single-version-externally-managed --record=record.txt
+$PYTHON setup.py install --single-version-externally-managed --record record.txt
diff --git a/recipes/severus/meta.yaml b/recipes/severus/meta.yaml
new file mode 100644
index 0000000000000..313e6ac2f4c3d
--- /dev/null
+++ b/recipes/severus/meta.yaml
@@ -0,0 +1,47 @@
+{% set version = "1.0" %}
+
+package:
+  name: severus
+  version: {{ version }}
+
+source:
+  url: https://github.com/KolmogorovLab/Severus/archive/refs/tags/{{ version }}.tar.gz
+  sha256: c14b76b4c952f8c68adbdd885e7c59e3500714aad39eaef00302a8c57aea82c7
+
+build:
+  number: 0
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage('severus', max_pin='x') }}
+
+requirements:
+  host:
+    - python >=3.8
+    - setuptools
+    - pip
+  run:
+    - python >=3.8
+    - setuptools
+    - pip
+    - samtools >=1.14
+    - networkx >=2.6
+    - pygraphviz
+    - pydot
+    - matplotlib-base
+    - biopython
+    - numpy
+    - pysam
+    - plotly
+
+extra:
+  skip-lints:
+    - uses_setuptools  #uses pkg_resources
+
+test:
+  commands:
+    - severus -h | grep breakpoint
+
+about:
+  home: https://github.com/KolmogorovLab/Severus
+  license: BSD-3-Clause
+  summary: A tool for somatic structural variant calling using long reads
diff --git a/recipes/sfs/build.sh b/recipes/sfs/build.sh
new file mode 100644
index 0000000000000..a3219c5ecc5b3
--- /dev/null
+++ b/recipes/sfs/build.sh
@@ -0,0 +1,12 @@
+#!/usr/bin/env bash
+
+set -eu
+
+if [ "$(uname)" == "Darwin" ]; then
+  export HOME=`mktemp -d`
+fi
+
+cargo build --release
+
+mv target/release/sfs "${PREFIX}/bin"
+
diff --git a/recipes/sfs/meta.yaml b/recipes/sfs/meta.yaml
new file mode 100644
index 0000000000000..a2eeebfb79259
--- /dev/null
+++ b/recipes/sfs/meta.yaml
@@ -0,0 +1,42 @@
+# Based on the fq recipe,
+# https://github.com/bioconda/bioconda-recipes/tree/13d0416856edbac9f3b3cd5dbbfedf2404f080ba/recipes/fq
+
+{% set name = "sfs" %}
+{% set version = "0.1.0" %}
+{% set sha256 = "9e182c5b8f2016618bdab5c34a3137418d0c129cefc87d59495cce7cb5d56926" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/malthesr/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  build:
+    - git
+    - rust
+
+test:
+  commands:
+    - sfs -h
+
+about:
+  home: https://github.com/malthesr/sfs
+  license: MIT
+  summary: CLI tool for site frequency spectra. 
+  description: >
+    A Rust CLI tool for creating and working with the site frequency spectra. 
+
+extra:
+  recipe-maintainers:
+    - malthesr
+  skip-lints:
+    - should_be_noarch_generic  # Rust's `cargo build` command makes this not a noarch recipe.
+
diff --git a/recipes/sharg/build.sh b/recipes/sharg/build.sh
new file mode 100644
index 0000000000000..a68bd02c73b52
--- /dev/null
+++ b/recipes/sharg/build.sh
@@ -0,0 +1,5 @@
+#!/bin/bash
+set -exuo pipefail
+
+cmake . -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX="${PREFIX}"
+make install
diff --git a/recipes/sharg/meta.yaml b/recipes/sharg/meta.yaml
new file mode 100644
index 0000000000000..edd18ee12069b
--- /dev/null
+++ b/recipes/sharg/meta.yaml
@@ -0,0 +1,50 @@
+{% set name = "sharg" %}
+{% set version = "1.1.1" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/seqan/sharg-parser/releases/download/{{ version }}/sharg-{{ version }}-Source.tar.xz
+  sha256: 7330f06501718e7871e55e5fd70d0e41472cc8b34bd0e3519f8c5547510c671c
+  patches:
+    - patch
+
+# osx can be enabled once clangxx_osx-64 17* is available on main channels
+build:
+  number: 0
+  skip: True # [osx]
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('cxx') }}
+    - cmake >=3.16
+  host:
+    - yaml-cpp
+  run:
+    - yaml-cpp
+
+test:
+  requires:
+    - make
+    - {{ compiler('cxx') }}
+    - cmake >=3.16
+
+about:
+  home: https://github.com/seqan/sharg-parser
+  summary: 'A modern argument parser for C++ tools.'
+  license: BSD-3-Clause
+  license_family: BSD
+  license_file: LICENSE.md
+  doc_url: https://docs.seqan.de/sharg/{{ version }}/index.html
+  doc_source_url: https://raw.githubusercontent.com/seqan/sharg-parser/{{ version }}/README.md
+  dev_url: https://github.com/seqan/sharg-parser
+
+extra:
+  maintainers:
+    - eseiler
+    - notestaff
diff --git a/recipes/sharg/patch b/recipes/sharg/patch
new file mode 100644
index 0000000000000..bd40922f0d57d
--- /dev/null
+++ b/recipes/sharg/patch
@@ -0,0 +1,77 @@
+diff --git a/build_system/sharg-config.cmake b/build_system/sharg-config.cmake
+index 8fb33cd..62eca72 100644
+--- a/build_system/sharg-config.cmake
++++ b/build_system/sharg-config.cmake
+@@ -157,15 +157,6 @@ set (CMAKE_REQUIRED_QUIET 1)
+ set (CMAKE_REQUIRED_INCLUDES ${CMAKE_INCLUDE_PATH} ${SHARG_INCLUDE_DIR} ${SHARG_DEPENDENCY_INCLUDE_DIRS})
+ set (CMAKE_REQUIRED_FLAGS ${CMAKE_CXX_FLAGS})
+
+-# ----------------------------------------------------------------------------
+-# Force-deactivate optional dependencies
+-# ----------------------------------------------------------------------------
+-
+-# These two are "opt-in", because detected by CMake
+-# If you want to force-require these, just do find_package (zlib REQUIRED) before find_package (sharg)
+-option (SHARG_NO_ZLIB "Don't use ZLIB, even if present." OFF)
+-option (SHARG_NO_BZIP2 "Don't use BZip2, even if present." OFF)
+-
+ # ----------------------------------------------------------------------------
+ # Require C++20
+ # ----------------------------------------------------------------------------
+@@ -217,6 +208,7 @@ endif ()
+ # ----------------------------------------------------------------------------
+ # tool description lib (tdl) dependency
+ # ----------------------------------------------------------------------------
++find_package (yaml-cpp QUIET)
+ find_package (TDL QUIET HINTS ${SHARG_SUBMODULES_DIR}/submodules/tool_description_lib ${SHARG_HINT_TDL})
+
+ if (TDL_FOUND)
+@@ -225,48 +217,6 @@ else ()
+     sharg_config_error ("Dependency:                 TDL not found.")
+ endif ()
+
+-# ----------------------------------------------------------------------------
+-# ZLIB dependency
+-# ----------------------------------------------------------------------------
+-
+-if (NOT SHARG_NO_ZLIB)
+-    find_package (ZLIB QUIET)
+-endif ()
+-
+-if (ZLIB_FOUND)
+-    set (SHARG_LIBRARIES ${SHARG_LIBRARIES} ${ZLIB_LIBRARIES})
+-    set (SHARG_DEPENDENCY_INCLUDE_DIRS ${SHARG_DEPENDENCY_INCLUDE_DIRS} ${ZLIB_INCLUDE_DIRS})
+-    set (SHARG_DEFINITIONS ${SHARG_DEFINITIONS} "-DSHARG_HAS_ZLIB=1")
+-    sharg_config_print ("Optional dependency:        ZLIB-${ZLIB_VERSION_STRING} found.")
+-else ()
+-    sharg_config_print ("Optional dependency:        ZLIB not found.")
+-endif ()
+-
+-# ----------------------------------------------------------------------------
+-# BZip2 dependency
+-# ----------------------------------------------------------------------------
+-
+-if (NOT SHARG_NO_BZIP2)
+-    find_package (BZip2 QUIET)
+-endif ()
+-
+-if (NOT ZLIB_FOUND AND BZIP2_FOUND)
+-    # NOTE (marehr): iostream_bzip2 uses the type `uInt`, which is defined by
+-    # `zlib`. Therefore, `bzip2` will cause a ton of errors without `zlib`.
+-    message (AUTHOR_WARNING "Disabling BZip2 [which was successfully found], "
+-                            "because ZLIB was not found. BZip2 depends on ZLIB.")
+-    unset (BZIP2_FOUND)
+-endif ()
+-
+-if (BZIP2_FOUND)
+-    set (SHARG_LIBRARIES ${SHARG_LIBRARIES} ${BZIP2_LIBRARIES})
+-    set (SHARG_DEPENDENCY_INCLUDE_DIRS ${SHARG_DEPENDENCY_INCLUDE_DIRS} ${BZIP2_INCLUDE_DIRS})
+-    set (SHARG_DEFINITIONS ${SHARG_DEFINITIONS} "-DSHARG_HAS_BZIP2=1")
+-    sharg_config_print ("Optional dependency:        BZip2-${BZIP2_VERSION_STRING} found.")
+-else ()
+-    sharg_config_print ("Optional dependency:        BZip2 not found.")
+-endif ()
+-
+ # ----------------------------------------------------------------------------
+ # System dependencies
+ # ----------------------------------------------------------------------------
diff --git a/recipes/sharg/run_test.sh b/recipes/sharg/run_test.sh
new file mode 100644
index 0000000000000..c30624f22a5c9
--- /dev/null
+++ b/recipes/sharg/run_test.sh
@@ -0,0 +1,26 @@
+#!/bin/bash
+set -exuo pipefail
+
+echo "#include <sharg/all.hpp>
+
+int main(int argc, char ** argv)
+{
+    int val{};
+
+    sharg::parser parser{\"Eat-Me-App\", argc, argv};
+    parser.add_subsection(\"Eating Numbers\");
+    parser.add_option(val, sharg::config{.short_id = 'i', .long_id = \"int\", .description = \"Desc.\"});
+    parser.parse();
+
+    return 0;
+}" > hello_world.cpp
+
+echo "cmake_minimum_required(VERSION 3.12)
+project(sharg_test CXX)
+find_package (sharg 1.0 REQUIRED)
+add_executable (hello_world hello_world.cpp)
+target_link_libraries (hello_world sharg::sharg)" > CMakeLists.txt
+
+cmake .
+make
+./hello_world -h
diff --git a/recipes/shasta/meta.yaml b/recipes/shasta/meta.yaml
index 83b59c3499f0f..fb4758f507aab 100644
--- a/recipes/shasta/meta.yaml
+++ b/recipes/shasta/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "shasta" %}
-{% set version = "0.11.1" %}
-{% set sha256 = "b7770d88738a00733f3d0de0e0f015fa997ad7d0ac5a3061093c1f4faaaa1b46" %}
+{% set version = "0.12.0" %}
+{% set sha256 = "abbecf0662f52a55e13fcb09cd337b5768623929b7e8c5e3ccac9dde4a626623" %}
 
 package:
   name: "{{ name|lower }}"
@@ -13,9 +13,11 @@ source:
   sha256: {{ sha256 }}  # [linux]
  
 build:
-  number: 2
+  number: 0
   # As announced with the release of Shasta 0.10.0, macOS versions of Shasta are no longer provided.
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage('shasta', max_pin="x") }}
 
 # https://chanzuckerberg.github.io/shasta/Prerequisites.html
 requirements:
diff --git a/recipes/shigapass/build.sh b/recipes/shigapass/build.sh
new file mode 100644
index 0000000000000..99ea9ae526cf4
--- /dev/null
+++ b/recipes/shigapass/build.sh
@@ -0,0 +1,29 @@
+#!/bin/bash
+
+# Copy shell script to bin
+mkdir -p $PREFIX/bin
+cp SCRIPT/ShigaPass.sh $PREFIX/bin
+
+# Create folder to copy database to
+target=${PREFIX}/share/${PKG_NAME}-${PKG_VERSION}
+mkdir -p ${target}/db
+touch ${target}/db/.empty
+
+# Unzip test files
+gunzip Example/Input/*.fasta.gz
+
+# Build index
+bash SCRIPT/ShigaPass.sh -l Example/Input/ShigaPass_test.txt -o Example/ShigaPass_Results -p SCRIPT/ShigaPass_DataBases -u -k
+
+# Copy ShigaPass db to target
+cp -r SCRIPT/ShigaPass_DataBases/* ${target}/db
+
+# Set ShigaPass DB PATH variable on env activation
+mkdir -p ${PREFIX}/etc/conda/activate.d ${PREFIX}/etc/conda/deactivate.d
+cat <<EOF >> ${PREFIX}/etc/conda/activate.d/shigapass.sh
+export SP_DB_PATH=${target}/db/
+EOF
+
+cat <<EOF >> ${PREFIX}/etc/conda/deactivate.d/shigapass.sh
+unset SP_DB_PATH
+EOF
diff --git a/recipes/shigapass/meta.yaml b/recipes/shigapass/meta.yaml
new file mode 100644
index 0000000000000..ede06da50a27a
--- /dev/null
+++ b/recipes/shigapass/meta.yaml
@@ -0,0 +1,34 @@
+{% set name = "ShigaPass" %}
+{% set version = "1.5.0" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: {{ version }}
+
+source:
+  url: https://github.com/imanyass/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: b07299943cd7bbe1f778b57152b6cd7e92cc8640ffd7192fde91dd1efcc99ead
+
+build:
+  number: 0
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage('shigapass', max_pin="x") }}
+
+requirements:
+  build:
+    - blast
+  run:
+    - blast
+
+test:
+  commands:
+    - blastn -h
+    - makeblastdb -h
+    - bash ShigaPass.sh -h
+
+about:
+  home: https://github.com/imanyass/ShigaPass/
+  license: GPL3
+  summary: 'ShigaPass: An in silico tool to predict Shigella serotypes'
+  license_file: LICENSE
diff --git a/recipes/shiver/build.sh b/recipes/shiver/build.sh
index 54b89dbf3429e..9ec97bacf120e 100644
--- a/recipes/shiver/build.sh
+++ b/recipes/shiver/build.sh
@@ -1,16 +1,16 @@
 #!/bin/bash
 mkdir $PREFIX/bin
-mkdir $PREFIX/bin/tools 
-install ${SRC_DIR}/shiver_align_contigs.sh -t $PREFIX/bin
-install ${SRC_DIR}/shiver_full_auto.sh -t $PREFIX/bin
-install ${SRC_DIR}/shiver_funcs.sh -t $PREFIX/bin
-install ${SRC_DIR}/shiver_init.sh -t $PREFIX/bin
-install ${SRC_DIR}/shiver_map_reads.sh -t $PREFIX/bin
-
-install ${SRC_DIR}/tools/*.py -t $PREFIX/bin/tools/
-install ${SRC_DIR}/tools/*.R -t $PREFIX/bin/tools/
-install ${SRC_DIR}/tools/*.sh -t $PREFIX/bin/tools/
-
-
+mkdir $PREFIX/bin/tools
+mkdir $PREFIX/data
+mkdir $PREFIX/data/external
+install ${SRC_DIR}/bin/shiver_align_contigs.sh -t $PREFIX/bin
+install ${SRC_DIR}/bin/shiver_funcs.sh -t $PREFIX/bin
+install ${SRC_DIR}/bin/shiver_init.sh -t $PREFIX/bin
+install ${SRC_DIR}/bin/shiver_map_reads.sh -t $PREFIX/bin
+install ${SRC_DIR}/bin/config.sh -t $PREFIX/bin
 
+install ${SRC_DIR}/bin/tools/*.py -t $PREFIX/bin/tools/
+install ${SRC_DIR}/bin/tools/*.R -t $PREFIX/bin/tools/
+install ${SRC_DIR}/bin/tools/*.sh -t $PREFIX/bin/tools/
 
+install ${SRC_DIR}/data/external/B.FR.83.HXB2_LAI_IIIB_BRU.K03455.fasta -t $PREFIX/data/external
diff --git a/recipes/shiver/meta.yaml b/recipes/shiver/meta.yaml
index 267510208db68..0838950193b3e 100644
--- a/recipes/shiver/meta.yaml
+++ b/recipes/shiver/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.5.7" %} # put in correct version here
+{% set version = "1.7.3" %} # put in correct version here
 {% set name = "shiver" %}
 
 package:
@@ -6,11 +6,12 @@ package:
   version: {{ version }}
 source:
   url: https://github.com/ChrisHIV/{{ name|lower }}/archive/v{{ version }}.tar.gz
-  sha256: 64973462bfc10c725ef5f21e85532ef8dd58d26795b2cee326a77f690d31ebf0
-  patches:
-    - python2-python3.patch
+  sha256: 4d373bf4d257e52ea1cc548c492bfe654dc677c65df1d07402f898f73c9f1c65
 build:
-  number: 1
+  number: 0
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage('shiver', max_pin="x") }}
 
 
 requirements:
@@ -21,16 +22,18 @@ requirements:
     - samtools
     - biopython
     - mafft
-    - picard
     - blast >=2.2.28
     - pyfastaq
+    - six
+    - pandas
+    - bc
 
 test:
   commands:
-    - shiver_init.sh 2>&1 | grep "Arguments"
-    - shiver_full_auto.sh 2>&1 | grep "Arguments"
-    - shiver_align_contigs.sh 2>&1 | grep "Arguments"
-    - shiver_map_reads.sh 2>&1 | grep "Arguments"
+    - shiver_init.sh --test $PREFIX/bin/config.sh
+    - shiver_align_contigs.sh --test $PREFIX/bin/config.sh
+    - shiver_map_reads.sh --test $PREFIX/bin/config.sh paired
+    - $PREFIX/bin/tools/TestPythonModulesInstalled.py
 
 about:
   home: https://github.com/ChrisHIV/shiver
@@ -43,3 +46,4 @@ extra:
   recipe-maintainers:
     - notestaff
     - gtonkinhill
+    - chrishiv
diff --git a/recipes/shortseq/meta.yaml b/recipes/shortseq/meta.yaml
new file mode 100644
index 0000000000000..5a2f1a7355ad6
--- /dev/null
+++ b/recipes/shortseq/meta.yaml
@@ -0,0 +1,44 @@
+{% set version = "0.0.1" %}
+{% set sha256 = "99fa125603dbf5f55d80c0e42430e6a79b535ec40de51905b4b4117897022dd4" %}
+
+package:
+  name: shortseq
+  version: {{ version }}
+
+source:
+  url: https://github.com/AlexTate/ShortSeq/archive/{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  skip: True  # [not unix]
+  number: 0
+  script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage('shortseq', max_pin="x.x") }}
+
+requirements:
+  build:
+    - {{ compiler('cxx') }}
+  host:
+    - python 3.10.*
+    - setuptools
+    - cython
+    - numpy
+  run:
+    - python 3.10.*
+
+test:
+  imports:
+    - ShortSeq
+    - numpy
+  commands:
+    - python -m unittest ShortSeq.tests.unit_tests_main
+
+about:
+  home: https://github.com/AlexTate/ShortSeq
+  license: MIT
+  summary: \
+    ShortSeqs are compact and efficient Python objects that hold short sequences 
+    while using up to 73% less memory compared to built-in types. They have a 
+    pre-computed hash value, can be compared for equality, and are 
+    easily converted back to the original sequence string.
diff --git a/recipes/shortstack/meta.yaml b/recipes/shortstack/meta.yaml
index cb346e90fd51a..6d48ecdb909da 100644
--- a/recipes/shortstack/meta.yaml
+++ b/recipes/shortstack/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "ShortStack" %}
-{% set version = "4.0.2" %}
-{% set sha256 = "049db4495f1e9c8d5fc9d23e3d6974205096135609812ab9f68e71bdd53f24a6" %}
+{% set version = "4.0.4" %}
+{% set sha256 = "62bd8424c95bacb85350fd9a23c9a6b446f6bee86770d08803b7fad0bb512ac2" %}
 
 package:
   name: {{ name|lower }}
@@ -13,6 +13,8 @@ source:
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('shortstack', max_pin="x") }}
 
 requirements:
   run:
diff --git a/recipes/sigprofilerassignment/meta.yaml b/recipes/sigprofilerassignment/meta.yaml
new file mode 100644
index 0000000000000..e13ca781d904e
--- /dev/null
+++ b/recipes/sigprofilerassignment/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "SigProfilerAssignment" %}
+{% set version = "0.1.6" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/SigProfilerAssignment-{{ version }}.tar.gz
+  sha256: 2fd2c317c03cbb0992b8e3083066e13bf366b9e58fa540a74b1ba33d28d0ac1d
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.8
+    - pip
+  run:
+    - python >=3.8
+    - scipy >=1.6
+    - numpy >=1.21
+    - pandas >=1.2,<2.0
+    - sigprofilermatrixgenerator >=1.2
+    - sigprofilerplotting >=1.3
+    - statsmodels >=0.9
+    - scikit-learn >=0.24
+    - psutil >=5.6.1
+    - reportlab >=3.5
+    - pypdf >=3.0
+    - alive-progress >=2.4
+    - pdf2image >=1.16
+    - pymupdf >=1.21
+
+test:
+  imports:
+    - SigProfilerAssignment
+
+about:
+  home: https://github.com/AlexandrovLab/SigProfilerAssignment.git
+  summary: SigProfilerAssignment - Assignment of known mutational signatures to individual samples and individual somatic mutations
+  license: BSD-2-Clause
+  license_file: LICENSE.txt
diff --git a/recipes/sigprofilermatrixgenerator/meta.yaml b/recipes/sigprofilermatrixgenerator/meta.yaml
new file mode 100644
index 0000000000000..e608211acf216
--- /dev/null
+++ b/recipes/sigprofilermatrixgenerator/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "SigProfilerMatrixGenerator" %}
+{% set version = "1.2.26" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/SigProfilerMatrixGenerator-{{ version }}.tar.gz
+  sha256: c405db79fbe5e42447e3ec2ae8b85519cc2ab8e94b23f66f50e8963345b2f797
+
+build:
+  entry_points:
+    - SigProfilerMatrixGenerator=SigProfilerMatrixGenerator.scripts.SigProfilerMatrixGenerator_CLI:main_function
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.8
+    - pip
+  run:
+    - python >=3.8
+    - matplotlib-base >=2.2.2
+    - sigprofilerplotting >=1.3.16
+    - statsmodels >=0.9.0
+    - scipy >=1.1.0
+    - numpy >=1.18.5
+    - pandas >=0.23.4,<2.0.0
+
+test:
+  imports:
+    - SigProfilerMatrixGenerator
+  commands:
+    - pip check
+    - SigProfilerMatrixGenerator install --help
+  requires:
+    - pip
+
+about:
+  home: https://github.com/AlexandrovLab/SigProfilerMatrixGenerator.git
+  summary: SigProfiler matrix generator tool
+  license: BSD-2-Clause
+  license_file: LICENSE
diff --git a/recipes/sigprofilerplotting/meta.yaml b/recipes/sigprofilerplotting/meta.yaml
new file mode 100644
index 0000000000000..26a637ebc5fb5
--- /dev/null
+++ b/recipes/sigprofilerplotting/meta.yaml
@@ -0,0 +1,45 @@
+{% set name = "SigProfilerPlotting" %}
+{% set version = "1.3.23" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/sigProfilerPlotting-{{ version }}.tar.gz
+  sha256: 867201902893dbca89444309229731b2294fdbf254dbd76ebd970ca36198b825
+
+build:
+  entry_points:
+    - SigProfilerPlotting=sigProfilerPlotting.sigProfilerPlotting_CLI:main_function
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x") }}
+
+requirements:
+  host:
+    - python
+    - pip
+  run:
+    - python
+    - matplotlib-base >=3.4.3
+    - pandas >=1.2.4,<2.0.0
+    - scikit-learn >=1.1.3
+    - pillow >=10.0.0
+
+test:
+  imports:
+    - sigProfilerPlotting
+  commands:
+    - pip check
+    - SigProfilerPlotting plotSBS --help
+  requires:
+    - pip
+
+about:
+  home: https://github.com/alexandrovlab/SigProfilerPlotting
+  summary: SigProfiler plotting tool
+  license: BSD-2-Clause
+  license_file: LICENSE
diff --git a/recipes/simpleaf/build.sh b/recipes/simpleaf/build.sh
index be24ecc64d3c6..05c57b630a9d8 100644
--- a/recipes/simpleaf/build.sh
+++ b/recipes/simpleaf/build.sh
@@ -7,4 +7,4 @@ export CXXFLAGS="${CFLAGS} -fcommon"
 export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="$(pwd)/.cargo"
 
 # build statically linked binary with Rust
-RUST_BACKTRACE=1 cargo install --verbose --root $PREFIX --path .
+RUST_BACKTRACE=1 cargo install --locked --verbose --root $PREFIX --path .
diff --git a/recipes/simpleaf/meta.yaml b/recipes/simpleaf/meta.yaml
index c9348e6543f68..3d1763a882e62 100644
--- a/recipes/simpleaf/meta.yaml
+++ b/recipes/simpleaf/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.14.1" %}
+{% set version = "0.16.2" %}
 
 package:
   name: simpleaf
@@ -6,15 +6,17 @@ package:
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage("simpleaf", max_pin="x.x") }}
 #  script: cargo install --path . --root ${PREFIX}
 
 source:
   url: https://github.com/COMBINE-lab/simpleaf/archive/v{{ version }}.tar.gz
-  sha256: 82b8c6210ffc668bd97abefa316705416ae0e511fba2fdd103fafc74a0e32f16
+  sha256: e35fb2773b3f4f158d23ebc6d0b51aed29ea54206a3c57a56931325e67add720
 
 requirements:
   build:
-    - rust >=1.66
+    - rust >=1.73
     - autoconf
     - make
     - {{ compiler('cxx') }}
@@ -22,7 +24,8 @@ requirements:
   host:
   run:
     - alevin-fry >=0.8.1
-    - salmon >=1.10.0
+    - salmon >=1.10.1
+    - piscem >=0.7.0 # [not osx-arm64]
 
 test:
   commands:
diff --git a/recipes/sincei/meta.yaml b/recipes/sincei/meta.yaml
new file mode 100644
index 0000000000000..8501d4ad1cd8a
--- /dev/null
+++ b/recipes/sincei/meta.yaml
@@ -0,0 +1,54 @@
+{% set name = "sincei" %}
+{% set version = "0.3.1" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: cd88a5ffa837989b3245b870c164e243962ec79f76e313bcd576ee1447af97a3
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - sincei = sincei.sincei:main
+  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage("sincei", max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.8
+    - pip
+    - hatchling
+  run:
+    - python >=3.8
+    - umap-learn
+    - pandas
+    - deeptools
+    - scanpy
+    - loompy
+    - gensim
+    - networkx
+    - leidenalg
+    - python-igraph
+    - importlib-metadata
+
+test:
+  imports:
+    - sincei
+  commands:
+    - sincei -h
+
+about:
+  home: https://github.com/bhardwaj-lab/sincei
+  license: MIT
+  license_file: LICENCE.txt
+  summary: A user-friendly toolkit for QC, counting, clustering and plotting of single-cell (epi)genomics data.
+
+extra:
+  identifiers:
+    - biotools:sincei
+    - doi:10.5281/zenodo.8105536
diff --git a/recipes/singlem/meta.yaml b/recipes/singlem/meta.yaml
index 0b38ac63a0db3..009d1a627814f 100644
--- a/recipes/singlem/meta.yaml
+++ b/recipes/singlem/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "singlem" %}
-{% set version = "0.13.2" %}
+{% set version = "0.16.0" %}
 
 package:
   name: {{ name|lower }}
@@ -7,12 +7,14 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 46daead5d6ab89b741700544c26027d07b0ca3652c06a91e0a8215634845ea3b
+  sha256: 64e43a6a40795d68ff5aed7dfff9a94532b862f25a28c27de7d588d64a8c7f79
 
 build:
-  number: 2
+  number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage('singlem', max_pin="x") }}
 
 requirements:
   host:
@@ -20,27 +22,38 @@ requirements:
     - python >=3.6
     - nose >=1.0
   run:
-    - python >=3.6
-    - graftm =0.13.1 # 0.14 requires python 3.7+, which is incompatible because of tempdir, but the first graftm 0.14.0 recipe is flawed - it will install but not work when.
-    - extern >=0.0.4
-    - tempdir >=0.6
-    - biopython >=1.64
-    - dendropy >=0.4.0
-    - pandas
-    - biom-format >=2.1.6
-    - orator >=0.9.7
-    - squarify >=0.3.0
-    - matplotlib-base >=2.0.2
-    - smafa >=0.5.0
-    - vsearch
-    - diamond >=0.9
-    - hmmer >=3.1b1
-    - h5py
-    - krona >=2.4
-    - orfm >=0.2.0
-    - pplacer >=1.1.alpha17
-    - mfqe >=0.5.0
+    - python >=3.7
+    - diamond >=2.1.7
+    - biopython
+    - hmmer
+    - orfm
+    - mfqe
+    - extern
+    - graftm >=0.14.0
+    - krona
+    - pplacer
+    - sra-tools
+    - ncbi-ngs-sdk
+    - sqlite
+    - squarify
+    - mafft
+    - seqmagick
     - expressbetadiversity
+    - cd-hit
+    - fasttree
+    - fastalite
+    - jinja2
+    - pip
+    - sqlalchemy
+    - pandas
+    - bird_tool_utils_python >=0.4.1
+    - zenodo_backpack
+    - smafa >=0.7.0
+    - pyranges
+    - polars >=0.19.3
+    - prodigal
+    - tqdm
+    - pyarrow
 
 test:
   imports:
@@ -54,5 +67,5 @@ about:
   home: https://github.com/wwood/singlem
   license: GNU General Public v3 (GPLv3)
   license_family: GPL3
-  license_file: LICENSE
+  license_file: LICENCE.txt
   summary: 'SingleM is a tool to find the abundances of discrete operational taxonomic units (OTUs) directly from shotgun metagenome data, without heavy reliance on reference sequence databases. It is able to differentiate closely related species even if those species are from lineages new to science.'
diff --git a/recipes/sinto/meta.yaml b/recipes/sinto/meta.yaml
index b308cf604c572..786a7991d620b 100644
--- a/recipes/sinto/meta.yaml
+++ b/recipes/sinto/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "sinto" %}
-{% set version = "0.9.0" %}
+{% set version = "0.10.1" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: d6c725807bb0ca8ef62a863e490c25080d46d4b85b6e2ed5808b29ba7b52a773
+  sha256: ac54280a62db55d139635cf96a2a36e40857282f660a67c1ce5d4a31115beae7
 
 build:
   number: 0
@@ -15,19 +15,21 @@ build:
   entry_points:
     - sinto = sinto.arguments:main
   script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage('sinto', max_pin="x") }}
 
 requirements:
   host:
-    - numpy
+    - python >=3.8
     - pip
-    - pysam >=0.14
-    - python
-    - scipy
+    - wheel
   run:
+    - python >=3.8
+    # pysam restricted due to cython requirement introduced in 0.21.0
+    - pysam >=0.14,<0.21
     - numpy
-    - pysam >=0.14
-    - python
     - scipy
+    - umi_tools
 
 test:
   imports:
@@ -36,10 +38,13 @@ test:
     - sinto --help
 
 about:
-  home: https://timoast.github.io/sinto/ 
+  home: https://timoast.github.io/sinto/
   license: MIT
   license_family: MIT
+  license_file: LICENSE
   summary: "sinto: tools for single-cell data processing"
+  dev_url: https://github.com/timoast/sinto
+  doc_url: https://timoast.github.io/sinto/
 
 extra:
   recipe-maintainers:
diff --git a/recipes/sirius-csifingerid/Kaempferol.ms b/recipes/sirius-csifingerid/Kaempferol.ms
new file mode 100644
index 0000000000000..158fa70382717
--- /dev/null
+++ b/recipes/sirius-csifingerid/Kaempferol.ms
@@ -0,0 +1,204 @@
+>compound Kaempferol
+>formula C15H10O6
+>parentmass 287.055541992188
+>ionization [M+H]+
+
+>collision 35
+106.7356185913086 3323.066650390625
+107.30970001220703 2923.055908203125
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+
+>collision 45
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+270.0489501953125 3367.868408203125
+286.6963806152344 2961.317626953125
+286.84942626953125 5375.8876953125
+287.0551452636719 980746.0
+287.2678527832031 3718.1728515625
+287.70599365234375 5349.69287109375
+287.8500671386719 11213.0419921875
+288.0580749511719 1990858.0
+288.269775390625 7959.69677734375
+288.60986328125 4350.59228515625
+
+
+>ms1peaks
+287.055541992188 2.9941396E7
+288.058349609375 4966443.0
+289.060211181641 726323.1875
+290.062744140625 74114.2734375
diff --git a/recipes/sirius-csifingerid/build.sh b/recipes/sirius-csifingerid/build.sh
index 961ccb718ce2f..10e3ed97bc975 100644
--- a/recipes/sirius-csifingerid/build.sh
+++ b/recipes/sirius-csifingerid/build.sh
@@ -1,32 +1,15 @@
-outdir=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
-
-
-if [[ ${target_platform} =~ linux.* ]] ; then
-    mkdir -p $outdir
-    mkdir -p $PREFIX/bin
-
-    cp -a ./* $outdir/
-    chmod +x $outdir/bin/sirius
-    # protecting libs from being modified by conda-build
-    tar czf $outdir/lib.tgz -C $outdir/lib .
-    rm -r $outdir/lib
-
-    ln -s $outdir/bin/sirius $PREFIX/bin
-    ln -s $outdir/bin/sirius-gui $PREFIX/bin
-
-elif [[ ${target_platform} =~ osx.* ]] ; then
-     mkdir -p $outdir/Contents
-     mkdir -p $PREFIX/bin
-
-     cp -a Contents/. $outdir/Contents
-     chmod +x $outdir/Contents/MacOS/sirius
-
-     # protecting libs from being modified by conda-build
-     tar czf $outdir/Contents/runtime.tgz -C $outdir/Contents/runtime .
-     tar czf $outdir/Contents/native.tgz -C $outdir/Contents/native .
-     rm -r $outdir/Contents/runtime
-     rm -r $outdir/Contents/native
-
-     ln -s $outdir/Contents/MacOS/sirius $PREFIX/bin
-     ln -s $outdir/Contents/MacOS/sirius-gui $PREFIX/bin
-fi
\ No newline at end of file
+packageName=$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
+outdir=$PREFIX/share/$packageName
+
+./gradlew :sirius_dist:sirius_gui_dist:installSiriusDist \
+  -P "build.sirius.location.lib=\$CONDA_PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM/app" \
+  -P "build.sirius.starter.jdk.include=false" \
+  -P "build.sirius.native.cbc.exclude=true" \
+  -P "build.sirius.native.openjfx.exclude=false" \
+  -P "build.sirius.platform=$target_platform"
+
+mkdir -p "${outdir:?}"
+mkdir -p "${PREFIX:?}/bin"
+cp -rp ./sirius_dist/$siriusDistDir/build/install/$siriusDistName/* "${outdir:?}/"
+rm -r "${outdir:?}/bin"
+cp -rp ./sirius_dist/$siriusDistDir/build/install/$siriusDistName/bin/* "${PREFIX:?}/bin/"
diff --git a/recipes/sirius-csifingerid/meta.yaml b/recipes/sirius-csifingerid/meta.yaml
index 4d74bb9908a90..818c2dd93a169 100644
--- a/recipes/sirius-csifingerid/meta.yaml
+++ b/recipes/sirius-csifingerid/meta.yaml
@@ -1,51 +1,46 @@
-{% set version = "4.9.15" %}
+{% set version = "5.8.6" %}
+{% set siriusDistDir = "sirius_gui_dist" %}
 
 package:
   name: sirius-csifingerid
   version: {{ version }}
 
 build:
-  number: 3
+  number: 0
+  script_env:
+    - siriusDistName={{ siriusDistDir }}-sirius
+    - siriusDistDir={{ siriusDistDir }}
+  run_exports:
+    - {{ pin_subpackage('sirius-csifingerid', max_pin="x") }}
+
 source:
-  - url: https://github.com/boecker-lab/sirius/releases/download/v{{ version }}/sirius-{{ version }}-linux64.zip  # [linux]
-    sha256: 6c468672cc59d20d3aa73c3b8a7932e8150e7ecd29c319ae6499572fe67dfc9f  # [linux]
-    # the runner script sets LD_LIBRARY_PATH which leads to `error while loading shared libraries: libz.so.1`
-    # the patch adds the lib path where conda installs libaries to the variable
-    patches:  # [linux]
-      - sirius.patch  # [linux]
-  - url: https://github.com/boecker-lab/sirius/releases/download/v{{ version }}/sirius-{{ version }}-osx64.zip  # [osx]
-    sha256: e9c61bb99b653c7ad490208ae5e68cca91f1120bab8194cb54361ff79e1ec6a5  # [osx]
+  - url: https://github.com/boecker-lab/sirius/archive/refs/tags/v{{ version }}.zip
+    sha256: f769a474140d6e28168d6d1526afc9e923e66eaeb0ace400e6c2ae77aa7f9202
 
 requirements:
   build:
-    - {{ compiler('c') }}
+    - openjdk 17.*
   run:
-    - zlib
-
+    - openjdk 17.*
+    - coin-or-cbc  # [not win]
 test:
   requires:
-    - wget
-  commands:
-    # Test running with link
-    - sirius --version
-    # Test running without link
-    - $(readlink -f $(which sirius)) --version # [linux]
-    # Run a job that loads included native libraries
-    - sh -ec 'cd /tmp; wget https://bio.informatik.uni-jena.de/wp/wp-content/uploads/2021/10/Kaempferol.ms; sirius -i Kaempferol.ms -o test-out sirius --solver CLP; if [ ! -f "test-out/0_Kaempferol_Kaempferol/trees/C15H10O6_[M+H]+.json" ]; then echo Framgentation tree test failed!; exit 1; fi'
+    - wget  # [not win]
 
 about:
-    home: https://bio.informatik.uni-jena.de/software/sirius/
-    license: AGPL-3.0-only
-    license_file:
-      - COPYING.txt  # [linux]
-      - LICENSE.txt  # [linux]
-      - Contents/COPYING.txt  # [osx]
-      - Contents/LICENSE.txt  # [osx]
-    summary: "SIRIUS LC-MS/MS data analyses framework. Includes: SIRIUS, ZODIAC, CSI:FingerID (with COSMIC) and CANOPUS"
-    description: SIRIUS is a java-based software framework for the analysis of LC-MS/MS data of metabolites and other
-      small molecules of biological interest. SIRIUS integrates a collection of our tools, including CSI:FingerID
-      (with COSMIC), ZODIAC and CANOPUS.  In particular, both the graphical user interface and the command line version
-      of SIRIUS seamlessly integrate the CSI:FingerID and CANOPUS web services.
+  home: https://bio.informatik.uni-jena.de/software/sirius/
+  license: AGPL-3.0-only AND OTHER
+  license_file:
+    - sirius_dist/{{ siriusDistDir }}/build/install/{{ siriusDistDir }}-sirius/COPYING.txt
+    - sirius_dist/{{ siriusDistDir }}/build/install/{{ siriusDistDir }}-sirius/LICENSE.txt
+    - sirius_dist/{{ siriusDistDir }}/build/install/{{ siriusDistDir }}-sirius/licenses.md
+  summary: "SIRIUS (CLI + GUI) LC-MS/MS data analyses framework. Includes: SIRIUS, ZODIAC, CSI:FingerID (with COSMIC) and CANOPUS"
+  description: SIRIUS is a java-based software framework for the analysis of LC-MS/MS data of metabolites and other
+    small molecules of biological interest. SIRIUS integrates a collection of our tools, including CSI:FingerID
+    (with COSMIC), ZODIAC and CANOPUS.  In particular, both the graphical user interface and the command line version
+    of SIRIUS seamlessly integrate the CSI:FingerID and CANOPUS web services.
+  doc_url: https://boecker-lab.github.io/docs.sirius.github.io/
+  dev_url: https://github.com/boecker-lab/sirius
 
 extra:
   skip-lints:
diff --git a/recipes/sirius-csifingerid/post-link.sh b/recipes/sirius-csifingerid/post-link.sh
deleted file mode 100644
index 9ce171185955c..0000000000000
--- a/recipes/sirius-csifingerid/post-link.sh
+++ /dev/null
@@ -1,18 +0,0 @@
-#!/bin/bash
-outdir="${PREFIX}"/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
-# unpack library directory
-
-if [ "$(uname)" == "Darwin" ]; then
-    # Do something under Mac OS X platform
-    mkdir $outdir/Contents/native
-    mkdir $outdir/Contents/runtime
-    tar -xf $outdir/Contents/native.tgz -C $outdir/Contents/native
-    tar -xf $outdir/Contents/runtime.tgz -C $outdir/Contents/runtime
-    rm $outdir/Contents/native.tgz
-    rm $outdir/Contents/runtime.tgz
-elif [ "$(expr substr $(uname -s) 1 5)" == "Linux" ]; then
-    # Do something under GNU/Linux platform
-    mkdir $outdir/lib/
-    tar -xf $outdir/lib.tgz -C $outdir/lib/
-    rm $outdir/lib.tgz
-fi
diff --git a/recipes/sirius-csifingerid/run_test.sh b/recipes/sirius-csifingerid/run_test.sh
new file mode 100644
index 0000000000000..208acd80d5568
--- /dev/null
+++ b/recipes/sirius-csifingerid/run_test.sh
@@ -0,0 +1,14 @@
+#!/bin/sh
+
+java -version
+
+"$JAVA_HOME/bin/java" -version
+
+sirius --version
+
+sirius -i $RECIPE_DIR/Kaempferol.ms -o test-out sirius
+
+if [ ! -f "test-out/1_Kaempferol_Kaempferol/trees" ]; then
+  echo Framgentation tree test failed!
+  exit 1
+fi
diff --git a/recipes/sirius-csifingerid/sirius.patch b/recipes/sirius-csifingerid/sirius.patch
deleted file mode 100644
index d53409ceb68ef..0000000000000
--- a/recipes/sirius-csifingerid/sirius.patch
+++ /dev/null
@@ -1,18 +0,0 @@
---- bin/sirius-org	2022-03-22 01:39:20.000000000 +0100
-+++ bin/sirius	2022-04-13 23:31:51.977234373 +0200
-@@ -48,7 +48,7 @@
- DEFAULT_JVM_OPTS="-Xms1G -XX:MaxRAMPercentage=85 -XX:+UseG1GC -XX:+UseStringDeduplication -Djava.library.path=\"$GUROBI_HOME/lib\":\"$CPLEX_HOME/bin/x86-64_linux\":\"$APP_HOME/lib/native\":\"$APP_HOME/lib/runtime/lib\""
-
- # Native library path
--export LD_LIBRARY_PATH="$GUROBI_HOME/lib:$CPLEX_HOME/bin/x86-64_linux:$APP_HOME/lib/native:$APP_HOME/lib/runtime/lib:$LD_LIBRARY_PATH"
-+export LD_LIBRARY_PATH="$GUROBI_HOME/lib:$CPLEX_HOME/bin/x86-64_linux:$APP_HOME/lib/native:$APP_HOME/lib/runtime/lib:$APP_HOME/../../lib:$LD_LIBRARY_PATH"
-
- # Add location of jar files for Classpath
- JAR_HOME="$APP_HOME/lib/app"
-@@ -72,4 +72,4 @@
- # Collect all arguments for the java command, following the shell quoting and substitution rules
- eval set -- "$DEFAULT_JVM_OPTS" "$JAVA_OPTS" "$SIRIUS_OPTS" -classpath "$CLASSPATH" "$MAIN_CLASS" "$APP_ARGS"
- 
--exec "$JAVACMD" "$@"
-\ No newline at end of file
-+exec "$JAVACMD" "$@"
diff --git a/recipes/sistr_cmd/build.sh b/recipes/sistr_cmd/build.sh
new file mode 100644
index 0000000000000..27efb5e5b1c08
--- /dev/null
+++ b/recipes/sistr_cmd/build.sh
@@ -0,0 +1,3 @@
+#!/bin/bash
+python -m pip install . --no-deps --no-build-isolation --ignore-installed --no-cache-dir -vvv
+${PREFIX}/bin/sistr_init
diff --git a/recipes/sistr_cmd/meta.yaml b/recipes/sistr_cmd/meta.yaml
index b87ccfaeab3f3..ed0a38044b262 100644
--- a/recipes/sistr_cmd/meta.yaml
+++ b/recipes/sistr_cmd/meta.yaml
@@ -1,33 +1,44 @@
 {% set name = "sistr_cmd" %}
-{% set version = "1.1.1" %}
+{% set version = "1.1.2" %}
 
 package:
   name: "{{ name|lower }}"
   version: "{{ version }}"
 
 source:
-  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: bf6f076b2bf4b7df78ff86bc905f11f19f982bddc812effb1ae373de86d4ae6f
+  url: https://github.com/phac-nml/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 5acffbaeb345bb6bdea4fae3317e651c254b114b37762eeb284c5bfa928329a2
+  
 
 build:
+  number: 1
   noarch: python
-  number: 3
-  script: "{{ PYTHON }} -m pip install . --no-deps -vv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+  entry_points:
+    - sistr=sistr.sistr_cmd:main
+    - sistr_init=sistr.sistr_cmd:setup_sistr_dbs
 
 requirements:
   host:
-    - python
+    - python >=3.4
     - pip
+    - setuptools ==58.2.0
+    - pandas >=0.22,<3
+    - pycurl
+    - scipy >=1.1.0,<2
+    - pytables >=3.3.0
+    - numpy
   run:
-    - python
-    - numpy >=1.11.1,<1.23.5
-    - pandas >=0.18.1,<=1.0.5
+    - python >=3.4
+    - {{ pin_compatible('numpy', max_pin="x") }}
+    - pandas >=0.22,<3
     - pytables >=3.3.0
-    - pycurl >=7.43.0,<8
-    - scipy >=1.1.0,<2
-    - blast
+    - {{ pin_compatible('scipy', max_pin="x.x") }}
+    - {{ pin_compatible('pycurl') }}
+    - blast >=2.9.0
     - mafft
-    - mash
+    - mash >=2.0
     - python-dateutil
 
 test:
@@ -36,8 +47,15 @@ test:
     - sistr -V
 
 about:
-  home: https://github.com/peterk87/sistr_cmd/
+  home: https://github.com/phac-nml/sistr_cmd/
   license: Apache-2.0
   license_family: APACHE
   license_file: LICENSE
-  summary: "Salmonella In Silico Typing Resource (SISTR) commandline tool for serovar prediction"
\ No newline at end of file
+  summary: "Salmonella In Silico Typing Resource (SISTR) commandline tool for serovar prediction"
+  dev_url: https://github.com/phac-nml/sistr_cmd
+
+extra:
+  identifiers:
+    - usegalaxy-eu:sistr_cmd
+    - doi:10.1371/journal.pone.0147101
+    - biotools:SISTR
diff --git a/recipes/ska2/meta.yaml b/recipes/ska2/meta.yaml
index 54ce3e8f3be19..99e4a3aa8967f 100644
--- a/recipes/ska2/meta.yaml
+++ b/recipes/ska2/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "ska2" %}
-{% set version = "0.3.2" %}
+{% set version = "0.3.7" %}
 
 package:
   name: {{ name|lower}}
@@ -7,11 +7,13 @@ package:
 
 source:
   url: https://github.com/bacpop/ska.rust/archive/v{{ version }}.tar.gz
-  sha256: 53ac7e43e55b589fda5891b3b87d18ef580d83214189f090a1a00d1d028e4dd3
+  sha256: ea7234428f253638b2093abdd6c8b1e8362ecad0ba56e3b29700af9a4481d911
 
 build:
-  number: 0
+  number: 1
   script: "cargo install --no-track --locked --verbose --root \"${PREFIX}\" --path ."
+  run_exports:
+    - {{ pin_subpackage("ska2", max_pin="x.x") }}
 
 requirements:
   build:
@@ -27,3 +29,7 @@ about:
    license_family: APACHE
    license_file: LICENSE
    summary: SKA (Split Kmer Analysis) version 2
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/skani/meta.yaml b/recipes/skani/meta.yaml
index 4da65835a1340..7c86f9a689682 100644
--- a/recipes/skani/meta.yaml
+++ b/recipes/skani/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.1.4" %}
+{% set version = "0.2.1" %}
 
 package:
   name: skani
@@ -6,19 +6,18 @@ package:
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage('skani', max_pin="x") }}
 
 source:
   url: https://github.com/bluenote-1577/skani/archive/v{{ version }}.tar.gz
-  sha256: b592dee6b13fa1a41ec76ea521f05f62de48f09fd5043ac0a772416a58d83446
+  sha256: 0516323d2ccc90889206b215f67e84bfa8fc9c4233608113508f27c1771bd126
 
 requirements:
   build:
     - {{ compiler("cxx") }}
     - rust >=1.39
     - make
-  host:
-  run:
-    
 
 test:
   commands:
diff --git a/recipes/skder/build.sh b/recipes/skder/build.sh
index 291176ac81b4b..77291308f3479 100644
--- a/recipes/skder/build.sh
+++ b/recipes/skder/build.sh
@@ -4,6 +4,9 @@ $PYTHON -m pip install . --ignore-installed --no-deps -vv
 
 mkdir -p ${PREFIX}/bin
 
-# (re)-compile programs written in C++
-${CXX} -std=c++11 -o ${PREFIX}/bin/skDERcore skDERcore.cpp
-chmod +x ${PREFIX}/bin/skDERcore
\ No newline at end of file
+# (re)-compile C++ programs
+${CXX} -std=c++11 -o ${PREFIX}/bin/skDERcore src/skDER/skDERcore.cpp
+${CXX} -std=c++11 -o ${PREFIX}/bin/skDERsum src/skDER/skDERsum.cpp
+
+chmod +x ${PREFIX}/bin/skDERcore
+chmod +x ${PREFIX}/bin/skDERsum
diff --git a/recipes/skder/meta.yaml b/recipes/skder/meta.yaml
index fa1e171d0b1c6..e82bf3f6e0c97 100644
--- a/recipes/skder/meta.yaml
+++ b/recipes/skder/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "skder" %}
-{% set version = "1.0" %}
+{% set version = "1.1.1" %}
 
 package:
   name: {{ name|lower }}
@@ -7,12 +7,14 @@ package:
 
 source:
   url: https://github.com/raufs/skDER/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 739c564ca8f02be1a1878f51a8b40c6561b832d176757672a9a25008bf6f6cf9
+  sha256: 486b717bca65c0efe89c9108305fe93bbf3cd4562508a6db8a3ed440de3db71c
 
 build:
   number: 0
   skip: True # [py <= 39]
-
+  run_exports:
+    - {{ pin_subpackage('skder', max_pin='x.x') }}
+    
 requirements:
   build:
      - {{ compiler('cxx') }}
@@ -28,15 +30,16 @@ requirements:
     - skani
     - ncbi-genome-download
     - pyfastx
+    - wget
 
 test:
   commands:
-    - skDER.py -h
+    - skder -h
 
 about:
   home: https://github.com/raufs/skDER
   license: BSD-3-Clause license
   license_file: LICENSE
   license_family: BSD
-  summary: "skDER: efficient dynamic dereplication of genomes using skani"
+  summary: "skDER: efficient & high-resolution dereplication of microbial genomes"
   dev_url: https://github.com/raufs/skDER
diff --git a/recipes/skesa/build.sh b/recipes/skesa/build.sh
index 7eef6c2a8b0f7..788ad7a98c066 100644
--- a/recipes/skesa/build.sh
+++ b/recipes/skesa/build.sh
@@ -1,18 +1,26 @@
 #!/bin/bash
 
 export LIBRARY_PATH=${PREFIX}/lib
+export LD_LIBRARY_PATH=${PREFIX}/lib
 export CPP_INCLUDE_PATH=${PREFIX}/include
 export CPLUS_INCLUDE_PATH=${PREFIX}/include
 export CXX_INCLUDE_PATH=${PREFIX}/include
 
-makefile="Makefile.nongs"
-
 if [ "$(uname)" == "Darwin" ]; then
-  sed -i.bak 's/-Wl,-Bstatic//' $makefile
-  sed -i.bak 's/-Wl,-Bdynamic -lrt//' $makefile
+  sed -i.bak 's/-Wl,-Bstatic//' Makefile.nongs
+  sed -i.bak 's/-Wl,-Bdynamic -lrt//' Makefile.nongs
 fi
 
-make -f $makefile BOOST_PATH=${PREFIX} CC="$CXX $CXXFLAGS"
+LDFLAGS=-L${PREFIX}/lib
+
+make -f Makefile.nongs \
+    BOOST_PATH=${PREFIX} \
+    CC="$CXX $CXXFLAGS" \
+    LDFLAGS=$LDFLAGS
 
 mkdir -p ${PREFIX}/bin
 mv skesa ${PREFIX}/bin/
+mv saute ${PREFIX}/bin/
+mv saute_prot ${PREFIX}/bin/
+mv gfa_connector ${PREFIX}/bin/
+mv kmercounter ${PREFIX}/bin/
diff --git a/recipes/skesa/meta.yaml b/recipes/skesa/meta.yaml
index 7c11768fe3e0e..b525d025cfcec 100644
--- a/recipes/skesa/meta.yaml
+++ b/recipes/skesa/meta.yaml
@@ -1,34 +1,45 @@
 {% set name="skesa" %}
-{% set version="2.4.0" %}
+{% set release_tag="skesa.2.4.0_saute.1.3.0_2" %}
+{% set version="2.5.1" %}
+# version number does not always match release tag. Please review the source
+# file at: https://github.com/ncbi/SKESA/blob/master/skesa.cpp
 
 package:
   name: {{ name }}
   version: {{ version }}
 
 source:
-  url: https://github.com/ncbi/SKESA/archive/v{{ version }}.tar.gz
-  sha256: 5bd8fa7e6efcb717c7a69156d783a298011028f7756b82d917314e11db6adb36
+  url: https://github.com/ncbi/SKESA/archive/refs/tags/{{ release_tag }}.tar.gz
+  sha256: dc5ad60f963afb09d3f2a3bab8917e657bd93364f0deca6e6844ede44968e979
 
 build:
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   build:
     - make
     - {{ compiler('cxx') }}
   host:
+    # Last version of conda-forge::boost that included static files (.a)
+    - boost 1.71
     - zlib
-    - boost
   run:
-    - zlib
-    - boost
+    - libstdcxx-ng # [linux]
+    - boost 1.71 # [osx]
+    - zlib # [osx]
 
 test:
   commands:
     - skesa --version
+    - saute --version
+    - saute_prot --version
+    - gfa_connector --version
+    - kmercounter --version
 
 about:
-  home: https://ftp.ncbi.nlm.nih.gov/pub/agarwala/skesa
+  home: https://github.com/ncbi/SKESA
   license: Public Domain
   license_file: LICENSE
-  summary: 'Strategic Kmer Extension for Scrupulous Assemblies'
+  summary: 'Strategic Kmer Extension for Scrupulous Assemblies & Sequence Assembly Using Target Enrichment'
diff --git a/recipes/skyline2isocor/meta.yaml b/recipes/skyline2isocor/meta.yaml
new file mode 100644
index 0000000000000..be8a9b9d96ae9
--- /dev/null
+++ b/recipes/skyline2isocor/meta.yaml
@@ -0,0 +1,45 @@
+{% set name = "skyline2isocor" %}
+{% set version = "1.0.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/skyline2isocor-{{ version }}.tar.gz
+  sha256: b202927c63bd10693c5b423cc6a4bd93efcbac0fb0ab86d5a68fae69b026a6d2
+
+build:
+  entry_points:
+    - skyline2isocor = skyline2isocor.cli:start_cli
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('skyline2isocor', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.11,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.11.0,<4.0.0
+    - pandas >=2.1.4,<3.0.0
+
+test:
+  imports:
+    - skyline2isocor
+  commands:
+    - skyline2isocor --help
+
+about:
+  home: https://pypi.org/project/skyline2isocor/
+  summary: Convert skyline output to IsoCor input format
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - llegregam
diff --git a/recipes/slivar/meta.yaml b/recipes/slivar/meta.yaml
index 34672f5e3da9b..990da358fce32 100644
--- a/recipes/slivar/meta.yaml
+++ b/recipes/slivar/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "slivar" %}
-{% set version = "0.3.0" %}
+{% set version = "0.3.1" %}
 
 package:
   name: {{ name|lower }}
@@ -7,11 +7,13 @@ package:
 
 source:
   url: https://github.com/brentp/slivar/releases/download/v{{ version }}/slivar
-  sha256: 5cd6f69f5244ef32cdf5155fcf5128d3bcdc965affe483ff121741e0b1fa28e3
+  sha256: 7378f566e2abba91dc03373f48ebac504b78aa4ed5d5d7c7549d053fede2f271
 
 build:
-  number: 2
+  number: 0
   skip: True  # [osx]
+  run_exports:
+    - '{{ pin_subpackage(name, max_pin="x.x") }}'
 
 requirements:
   build:
diff --git a/recipes/slow5curl/build.sh b/recipes/slow5curl/build.sh
new file mode 100644
index 0000000000000..ab6342d1471b4
--- /dev/null
+++ b/recipes/slow5curl/build.sh
@@ -0,0 +1,5 @@
+#!/bin/bash
+scripts/install-zstd.sh
+make CC=$CC zstd_local=../zstd/lib
+mkdir -p $PREFIX/bin
+cp slow5curl $PREFIX/bin/slow5curl
diff --git a/recipes/slow5curl/meta.yaml b/recipes/slow5curl/meta.yaml
new file mode 100644
index 0000000000000..3c6270698f1c6
--- /dev/null
+++ b/recipes/slow5curl/meta.yaml
@@ -0,0 +1,40 @@
+{% set name = "slow5curl" %}
+{% set version = "0.2.1" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/BonsonW/slow5curl/releases/download/v{{ version }}/slow5curl-v{{ version }}-release.tar.gz
+  sha256: 6c062e59dc3e8bd65612613da7ac9a2518544061f1ef81d159e938e717393d3e
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('slow5curl', max_pin="x") }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('c') }}
+  host:
+    - zlib
+    - wget
+    - curl
+  run:
+    - zlib
+    - curl
+
+test:
+  commands:
+    - slow5curl --help
+    - slow5curl --version
+
+about:
+  home: https://github.com/BonsonW/slow5curl
+  license: MIT
+  license_file: LICENSE
+  summary: Tool for accessing remote BLOW5 files.
+  description: 'slow5curl is a command line tool for fetching reads from remote BLOW5 files, which is built on top of slow5lib and libcurl.'
+
diff --git a/recipes/slow5tools/1.0.0/build.sh b/recipes/slow5tools/1.0.0/build.sh
new file mode 100644
index 0000000000000..4789f0a714cfb
--- /dev/null
+++ b/recipes/slow5tools/1.0.0/build.sh
@@ -0,0 +1,10 @@
+#!/bin/bash
+scripts/install-zstd.sh
+./configure  --enable-localzstd
+cd slow5lib
+make CC=$CC CXX=$CXX 
+cd ..
+export CFLAGS="${CFLAGS} -D__STDC_FORMAT_MACROS"
+make  CC=$CC CXX=$CXX 
+mkdir -p $PREFIX/bin
+cp slow5tools $PREFIX/bin/slow5tools
diff --git a/recipes/slow5tools/1.0.0/meta.yaml b/recipes/slow5tools/1.0.0/meta.yaml
new file mode 100644
index 0000000000000..157c7b5b7a8a4
--- /dev/null
+++ b/recipes/slow5tools/1.0.0/meta.yaml
@@ -0,0 +1,39 @@
+{% set name = "slow5tools" %}
+{% set version = "1.0.0" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/hasindu2008/slow5tools/releases/download/v{{ version }}/slow5tools-v{{ version }}-release.tar.gz
+  sha256: a1c188192adfe3ccea6eaa550716f7d784985377dc7dc1e210b2ed5c968fa6b1
+
+build:
+  number: 2
+
+requirements:
+  build:
+    - make
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+  host:
+    - zlib
+    - hdf5
+    - wget
+  run:
+    - zlib
+    - hdf5
+
+test:
+  commands:
+    - slow5tools --help
+    - slow5tools --version
+
+about:
+  home: https://github.com/hasindu2008/slow5tools
+  license: MIT
+  license_file: LICENSE
+  summary: Toolkit for S/bLOW5 format
+  description: 'Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.'
+
diff --git a/recipes/slow5tools/meta.yaml b/recipes/slow5tools/meta.yaml
index 157c7b5b7a8a4..2fdea0e8f865f 100644
--- a/recipes/slow5tools/meta.yaml
+++ b/recipes/slow5tools/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "slow5tools" %}
-{% set version = "1.0.0" %}
+{% set version = "1.1.0" %}
 
 package:
   name: {{ name }}
@@ -7,10 +7,12 @@ package:
 
 source:
   url: https://github.com/hasindu2008/slow5tools/releases/download/v{{ version }}/slow5tools-v{{ version }}-release.tar.gz
-  sha256: a1c188192adfe3ccea6eaa550716f7d784985377dc7dc1e210b2ed5c968fa6b1
+  sha256: 94b4a1917b80f212ab8d2442f414acb82e6a7c5db25087d89cbe99e4f910caef
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('slow5tools', max_pin="x") }}
 
 requirements:
   build:
diff --git a/recipes/smafa/build.sh b/recipes/smafa/build.sh
index 4315f1b960f14..d190f6e4249ff 100644
--- a/recipes/smafa/build.sh
+++ b/recipes/smafa/build.sh
@@ -1,10 +1,11 @@
-#!/bin/bash -e
+#!/bin/bash -euo
+
+mkdir -p ${PREFIX}/bin
 
 # Build statically linked binary with Rust
-C_INCLUDE_PATH=$PREFIX/include \
-LIBRARY_PATH=$PREFIX/lib \
-cargo build --release
+export C_INCLUDE_PATH="${PREFIX}/include" \
+export LIBRARY_PATH="${PREFIX}/lib" \
 
-# Install the binary
-mkdir -p ${PREFIX}/bin
-cp target/release/smafa $PREFIX/bin
+# build statically linked binary with Rust
+RUST_BACKTRACE=1
+cargo install --verbose --path . --root ${PREFIX}
diff --git a/recipes/smafa/meta.yaml b/recipes/smafa/meta.yaml
index 02c62ffdb868a..5a77eb6404adf 100644
--- a/recipes/smafa/meta.yaml
+++ b/recipes/smafa/meta.yaml
@@ -1,22 +1,24 @@
-{% set version = "0.7.1" %}
+{% set version = "0.8.0" %}
 {% set name = "smafa" %}
-{% set sha256 = "b7642e162da558a384c3e2980a5175c2899a7e261f869fc711f45371a9297686" %}
+{% set sha256 = "6f103ecd5cdf36fb61572a757732eeb07e905c61b497fa247c1a8397ee775c2d" %}
 
 package:
   name: {{ name }}
   version: {{ version }}
 
-build:
-  number: 0
-  skip: True # [osx]
-
 source:
   url: https://github.com/wwood/{{ name }}/archive/v{{version}}.tar.gz
   sha256: {{ sha256 }}
 
+build:
+  number: 0
+  skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage('smafa', max_pin="x.x") }}
+
 requirements:
   build:
-    - rust >=1.19
+    - {{ compiler('rust') }}
     - {{ compiler('c') }}
 
 test:
@@ -24,7 +26,9 @@ test:
     - smafa --version | grep {{ version }}
 
 about:
-  home: https://github.com/wwood/smafa
-  license: GPL3
-  license_file: LICENCE.txt
-  summary: smafa is a tool for querying and clustering pre-aligned small pre-aligned sequences.
+  home: "https://github.com/wwood/smafa"
+  license: "GPL-3.0-or-later"
+  license_family: GPL3
+  license_file: "LICENCE.txt"
+  summary: "smafa is a tool for querying and clustering pre-aligned small pre-aligned sequences."
+  dev_url: "https://github.com/wwood/smafa"
diff --git a/recipes/smallgenomeutilities/meta.yaml b/recipes/smallgenomeutilities/meta.yaml
index 9cb28a1e50d52..8ed0088e6e6d3 100644
--- a/recipes/smallgenomeutilities/meta.yaml
+++ b/recipes/smallgenomeutilities/meta.yaml
@@ -1,19 +1,22 @@
 {% set name = "smallgenomeutilities" %}
-{% set version = "0.3.9" %}
-{% set sha256 = "1c14a04b692397d0673fbde18f89aad442a466c343d242b71cdc629c812af4b6" %}
+{% set version = "0.4.1" %}
+{% set sha256 = "0fbf5077b8147bbcd445ee9e761f1234e947a093d3cc908bb1c3dfc76c1ce1e1" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
+  url: https://github.com/cbg-ethz/{{ name|lower }}/releases/download/{{ version }}/{{ name|lower }}-{{ version }}.tar.gz
+  #url: https://github.com/cbg-ethz/{{ name|lower }}/archive/{{ version }}.tar.gz # NOTE Git LSF bandwitch can be limited on this url
   #url: https://pypi.io/packages/source/{{ name[0]|lower }}/{{ name|lower }}/{{ name|lower }}-{{ version }}.tar.gz
-  url: https://github.com/cbg-ethz/{{ name|lower }}/archive/{{ version }}.tar.gz
   sha256: {{ sha256 }}
 
 build:
   noarch: python
   number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
   script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -v
 
 requirements:
@@ -22,7 +25,7 @@ requirements:
     - pip
   run:
     - python >3
-    - biopython
+    - biopython =1.83
     - pysam >=0.16
     - numpy
     - pandas
@@ -35,11 +38,13 @@ requirements:
     - pysamstats
     - mafft
 
+
 test:
   imports:
     - smallgenomeutilities
 
   commands:
+    - test "$(frameshift_deletions_checks --version|tee >(cat 1>&2)|grep -oE '[0-9]+(\.[0-9a-z]+)*$')" == "{{ version }}"
     - aln2basecnt -h
     - convert_qr -h
     - convert_reference -h
diff --git a/recipes/smashpp/meta.yaml b/recipes/smashpp/meta.yaml
index 5769f0bdecd0a..fb814b90e13aa 100644
--- a/recipes/smashpp/meta.yaml
+++ b/recipes/smashpp/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "22.08" %}
+{% set version = "23.09" %}
 
 package:
   name: smashpp
@@ -7,11 +7,13 @@ package:
 build:
   # Passes some invalid flags for clang
   skip: True  # [osx]
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('smashpp', max_pin="x") }}
 
 source:
   url: https://github.com/smortezah/smashpp/archive/refs/tags/{{ version }}.tar.gz
-  sha256: 7d8e25ea241cd8df5cfd2a38cba8e6d018fc1427c7044e03b630d5941cb468ba
+  sha256: fefb51add6bcefb62d0e4c70a5566746eee94790eae5b72b5ced655a5174b0ed
 
 requirements:
   build:
@@ -25,7 +27,7 @@ test:
 
 about:
   home: https://github.com/smortezah/smashpp
-  license: GPL3
+  license: GPL-3.0-or-later
   license_file: LICENSE
-  license_family: GPL
+  license_family: GPL3
   summary: A fast tool to find and visualize rearrangements in DNA sequences
diff --git a/recipes/smoothxg/CMakeLists.patch b/recipes/smoothxg/CMakeLists.patch
new file mode 100644
index 0000000000000..6d1b0839d930f
--- /dev/null
+++ b/recipes/smoothxg/CMakeLists.patch
@@ -0,0 +1,70 @@
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index f1f7d73..5e129f1 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -1,6 +1,6 @@
+ # Specify the minimum version for CMake
+ 
+-cmake_minimum_required(VERSION 3.16 FATAL_ERROR)
++cmake_minimum_required(VERSION 3.16)
+ 
+ # Project's name
+ project(smoothxg)
+@@ -8,43 +8,23 @@ project(smoothxg)
+ # We build using c++17
+ set(CMAKE_CXX_STANDARD 17)
+ 
+-enable_testing()
+-
+-include(CheckIPOSupported) # adds lto
+-check_ipo_supported(RESULT ipo_supported OUTPUT output)
+-SET(CMAKE_RANLIB "gcc-ranlib") # too try lto with older runtimes
+-
+-# This builds a static version of ./bin/smoothxg
+-option(BUILD_STATIC "Build static binary" OFF)
+-if (BUILD_STATIC)
+-  set(CMAKE_FIND_LIBRARY_SUFFIXES ".a")
+-  set(BUILD_SHARED_LIBS OFF)
+-  set(CMAKE_EXE_LINKER_FLAGS "-static")
+-endif()
+-
+-find_package(OpenMP)
+-# if(OpenMP_CXX_FOUND)
+-#     target_link_libraries(MyTarget PUBLIC OpenMP::OpenMP_CXX)
+-# endif()
+-
+-find_package(PkgConfig REQUIRED)
+ find_package(ZLIB REQUIRED)
+-# find_package(ZSTD REQUIRED) - needs recent versions of cmake
++
++enable_testing()
+ 
+ # Preload the following libraries before running tests
+ set(PRELOAD "libasan.so:libjemalloc.so.2")
+ 
+ if(NOT CMAKE_BUILD_TYPE)
+-  message(STATUS "Choose the type of build, options are: Release Debug Generic!")
++  set(CMAKE_BUILD_TYPE Release CACHE STRING
++          "Choose the type of build, options are: Release Debug Generic." FORCE)
+ endif()
+ 
+ # set(CMAKE_BUILD_TYPE Debug) -- don't uncomment this, instead run
+ #   cmake -DCMAKE_BUILD_TYPE=Debug ..
+ 
+ if (${CMAKE_BUILD_TYPE} MATCHES Release)
+-  if(NOT EXTRA_FLAGS)
+-    set(EXTRA_FLAGS "-Ofast -march=native -flto -fno-fat-lto-objects")
+-  endif()
++  set(EXTRA_FLAGS "-Ofast -march=native")
+   set(CMAKE_CXX_FLAGS_RELEASE "-DNDEBUG") # reset CXX_FLAGS to replace -O3 with -Ofast
+ 
+   # Increase SPOA's performance
+@@ -442,7 +422,7 @@ add_executable(smoothxg
+ target_link_libraries(smoothxg spoa abpoa)
+ target_link_libraries(smoothxg ${smoothxg_LIBS})
+ 
+-target_link_libraries(smoothxg z zstd jemalloc)
++target_link_libraries(smoothxg ZLIB::ZLIB zstd jemalloc)
+ 
+ set_target_properties(smoothxg PROPERTIES OUTPUT_NAME "smoothxg")
+ target_include_directories(smoothxg PUBLIC ${smoothxg_INCLUDES})
diff --git a/recipes/smoothxg/build.sh b/recipes/smoothxg/build.sh
index e52e210f5163a..af4870746eba9 100644
--- a/recipes/smoothxg/build.sh
+++ b/recipes/smoothxg/build.sh
@@ -10,6 +10,6 @@ sed -i 's/-msse4.1/-march=sandybridge -Ofast/g' deps/spoa/CMakeLists.txt
 sed -i 's/-march=native/-march=sandybridge -Ofast/g' deps/spoa/CMakeLists.txt
 sed -i 's/-march=native/-march=sandybridge -Ofast/g' deps/abPOA/CMakeLists.txt
 cmake -H. -Bbuild -DCMAKE_BUILD_TYPE=Generic -DEXTRA_FLAGS='-march=sandybridge -Ofast'
-cmake --build build
+cmake --build build --verbose
 mkdir -p $PREFIX/bin
 mv bin/* $PREFIX/bin
diff --git a/recipes/smoothxg/meta.yaml b/recipes/smoothxg/meta.yaml
index 48805d48923b9..b0382f7fd18a9 100644
--- a/recipes/smoothxg/meta.yaml
+++ b/recipes/smoothxg/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "smoothxg" %}
-{% set version = "0.7.0" %}
+{% set version = "0.7.4" %}
 
 package:
   name: "{{ name }}"
@@ -7,11 +7,15 @@ package:
 
 source:
   url: https://github.com/pangenome/{{ name }}/releases/download/v{{ version }}/{{ name }}-v{{ version }}.tar.gz
-  sha256: 4d4c7dfcfbe7291caf33bd0b04f4e1ca74a4c96e460bfc97032a1b0b64f58c7b
+  sha256: 6c15c1156ac3e1a29cdb4db20f46e1b22382b22640beaa7ec8e0d76564dc53ca
+  patches:
+    - CMakeLists.patch
 
 build:
   skip: True  # [osx]
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('smoothxg', max_pin="x") }}
 
 requirements:
   build:
diff --git a/recipes/snakedeploy/meta.yaml b/recipes/snakedeploy/meta.yaml
index 254146ce7a431..ee301e9d00857 100644
--- a/recipes/snakedeploy/meta.yaml
+++ b/recipes/snakedeploy/meta.yaml
@@ -1,5 +1,4 @@
-{% set version = "0.8.6" %}
-
+{% set version = "0.10.0" %}
 
 package:
   name: snakedeploy
@@ -7,14 +6,16 @@ package:
 
 source:
   url: https://pypi.io/packages/source/s/snakedeploy/snakedeploy-{{ version }}.tar.gz
-  sha256: 5f19eb36478ec26b5964ed260ac75292d42743c0a85b8077fc28fd399e5e7fc8
+  sha256: 85922677897e90e3d179e74ba41f28e174084ed184d4e2712a4c0be3890c6279
 
 build:
   number: 0
   noarch: python
   entry_points:
     - snakedeploy=snakedeploy.client:main
-  script: {{ PYTHON }} -m pip install . -vv
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation --use-pep517 -vvv
+  run_exports:
+    - {{ pin_subpackage('snakedeploy', max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/snakefmt/meta.yaml b/recipes/snakefmt/meta.yaml
index f366db6742cdb..993a11f02aaa8 100644
--- a/recipes/snakefmt/meta.yaml
+++ b/recipes/snakefmt/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.8.4" %}
+{% set version = "0.10.2" %}
 
 package:
   name: snakefmt
@@ -6,7 +6,7 @@ package:
 
 source:
   url: https://pypi.io/packages/source/s/snakefmt/snakefmt-{{ version }}.tar.gz
-  sha256: 277eb436d4d61161d2c75c6eece44df34bcbb6299bc3f4fffafb0976e16afe40
+  sha256: 4286a5903b66da7e52763c5e8184da4edc95113b758f4448528804fb54f9b75a
 
 build:
   number: 0
@@ -14,21 +14,22 @@ build:
   entry_points:
     - snakefmt = snakefmt.snakefmt:main
   script: {{ PYTHON }} -m pip install . -vv
+  run_exports:
+    - {{ pin_subpackage('snakefmt', max_pin="x") }}
 
 requirements:
   host:
-    - black >=23.1.0,<24.0
+    - black >=24.3,<25.0
     - click >=8.0.0,<9.0.0
     - pip
-    - python >=3.7
+    - python >=3.8
     - toml >=0.10.2,<0.11.0
     - poetry >=1.3,<2.0
   run:
-    - black >=23.1.0,<24.0
+    - black >=24.3,<25.0
     - click >=8.0.0,<9.0.0
-    - python >=3.7
+    - python >=3.8
     - toml >=0.10.2,<0.11.0
-    - importlib_metadata >=1.7,<5.0.0 # [py<3.8]
 
 test:
   imports:
diff --git a/recipes/snakemake-executor-plugin-azure-batch/meta.yaml b/recipes/snakemake-executor-plugin-azure-batch/meta.yaml
new file mode 100644
index 0000000000000..46334d0da48a9
--- /dev/null
+++ b/recipes/snakemake-executor-plugin-azure-batch/meta.yaml
@@ -0,0 +1,50 @@
+{% set name = "snakemake-executor-plugin-azure-batch" %}
+{% set version = "0.1.3" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snakemake_executor_plugin_azure_batch-{{ version }}.tar.gz
+  sha256: 7883ecdc3983eb73ea0e1ae10010eeff1626510c7e99176203ee2050031f86e3
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
+
+requirements:
+  host:
+    - python >=3.11,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.11.0,<4.0.0
+    - snakemake-interface-common >=1.15.0,<2.0.0
+    - snakemake-interface-executor-plugins >=8.1.1,<9.0.0
+    - azure-storage-blob >=12.17.0,<13.0.0
+    - azure-batch >=14.0.0,<15.0.0
+    - azure-mgmt-batch >=17.0.0,<18.0.0
+    - azure-identity >=1.14.0,<2.0.0
+    - msrest >=0.7.1,<0.8.0
+
+test:
+  imports:
+    - snakemake_executor_plugin_azure_batch
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/snakemake/snakemake-executor-plugin-azure-batch
+  summary: A Snakemake executor plugin for submitting jobs to Microsoft Azure Batch.
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - koesterlab
diff --git a/recipes/snakemake-executor-plugin-cluster-generic/meta.yaml b/recipes/snakemake-executor-plugin-cluster-generic/meta.yaml
new file mode 100644
index 0000000000000..a49c5bcab174a
--- /dev/null
+++ b/recipes/snakemake-executor-plugin-cluster-generic/meta.yaml
@@ -0,0 +1,42 @@
+{% set name = "snakemake-executor-plugin-cluster-generic" %}
+{% set version = "1.0.9" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snakemake_executor_plugin_cluster_generic-{{ version }}.tar.gz
+  sha256: ad0dc2d8bde7d4f336364bebe11a3b2209653c481ce8fbb0ae8bec81016a9a14
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
+
+requirements:
+  host:
+    - python >=3.11,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.11.0,<4.0.0
+    - snakemake-interface-executor-plugins >=9.0.0,<10.0.0
+    - snakemake-interface-common >=1.13.0,<2.0.0
+
+test:
+  imports:
+    - snakemake_executor_plugin_cluster_generic
+
+about:
+  home: https://github.com/snakemake/snakemake-executor-plugin-cluster-generic
+  summary: 'Generic cluster executor for Snakemake'
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - koesterlab
diff --git a/recipes/snakemake-executor-plugin-cluster-sync/meta.yaml b/recipes/snakemake-executor-plugin-cluster-sync/meta.yaml
new file mode 100644
index 0000000000000..04a8c2b648553
--- /dev/null
+++ b/recipes/snakemake-executor-plugin-cluster-sync/meta.yaml
@@ -0,0 +1,46 @@
+{% set name = "snakemake-executor-plugin-cluster-sync" %}
+{% set version = "0.1.4" %}
+# Upon version update, requirements have to be checked!
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snakemake_executor_plugin_cluster_sync-{{ version }}.tar.gz
+  sha256: 6a6dcb2110d4c2ee74f9a48ea68e0fd7ddd2800672ebef00a01faa4affa835ad
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
+
+requirements:
+  host:
+    - python >=3.11,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.11.0,<4.0.0
+    - snakemake-interface-common >=1.14.0,<2.0.0
+    - snakemake-interface-executor-plugins >=9.0.0,<10.0.0
+
+test:
+  imports:
+    - snakemake_executor_plugin_cluster_sync
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/snakemake/snakemake-executor-plugin-cluster-sync
+  summary: A Snakemake executor plugin for cluster jobs that are executed synchronously.
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - koesterlab
diff --git a/recipes/snakemake-executor-plugin-drmaa/meta.yaml b/recipes/snakemake-executor-plugin-drmaa/meta.yaml
new file mode 100644
index 0000000000000..7937a06afe146
--- /dev/null
+++ b/recipes/snakemake-executor-plugin-drmaa/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "snakemake-executor-plugin-drmaa" %}
+{% set version = "0.1.4" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snakemake_executor_plugin_drmaa-{{ version }}.tar.gz
+  sha256: 93ddefc3fcb5ee2241e4622d04fd1ffcfc58776ff9e723e958a0da2cc2c5fcb7
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
+
+requirements:
+  host:
+    - python >=3.11,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.11.0,<4.0.0
+    - snakemake-interface-common >=1.13.0,<2.0.0
+    - snakemake-interface-executor-plugins >=9.0.0,<10.0.0
+    - drmaa >=0.7.9,<0.8.0
+
+test:
+  imports:
+    - snakemake_executor_plugin_drmaa
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/snakemake/snakemake-executor-plugin-drmaa
+  summary: A snakemake executor plugin for submission of jobs via DRMAA.
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - koesterlab
diff --git a/recipes/snakemake-executor-plugin-googlebatch/meta.yaml b/recipes/snakemake-executor-plugin-googlebatch/meta.yaml
new file mode 100644
index 0000000000000..e47a6fbc91962
--- /dev/null
+++ b/recipes/snakemake-executor-plugin-googlebatch/meta.yaml
@@ -0,0 +1,49 @@
+{% set name = "snakemake-executor-plugin-googlebatch" %}
+{% set version = "0.4.0" %}
+# Upon version update, requirements have to be checked!
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snakemake_executor_plugin_googlebatch-{{ version }}.tar.gz
+  sha256: ad1ebf74d6558bc5ea9d1849570fb3c5991413265c771d944e99aeb8c49217d2
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
+
+requirements:
+  host:
+    - python >=3.11,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.11.0,<4.0.0
+    - google-cloud-batch >=0.17.1,<0.18.0
+    - requests >=2.31.0,<3.0.0
+    - google-api-core >=2.12.0,<3.0.0
+    - google-cloud-storage >=2.12.0,<3.0.0
+    - snakemake-interface-common >=1.14.0,<2.0.0
+    - snakemake-interface-executor-plugins >=9.0.0,<10.0.0
+    - jinja2 >=3.1.2,<4.0.0
+    - google-cloud-logging >=3.8.0,<4.0.0
+
+test:
+  imports:
+    - snakemake_executor_plugin_googlebatch
+
+about:
+  home: https://github.com/snakemake/snakemake-executor-plugin-googlebatch
+  summary: 'Snakemake executor plugin for Google Batch'
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - koesterlab
diff --git a/recipes/snakemake-executor-plugin-kubernetes/meta.yaml b/recipes/snakemake-executor-plugin-kubernetes/meta.yaml
new file mode 100644
index 0000000000000..c4ffe95046b1e
--- /dev/null
+++ b/recipes/snakemake-executor-plugin-kubernetes/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "snakemake-executor-plugin-kubernetes" %}
+{% set version = "0.1.5" %}
+# Upon version update, requirements have to be checked!
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snakemake_executor_plugin_kubernetes-{{ version }}.tar.gz
+  sha256: 7984ef057c25ce1ff46ceac5839dfad01e2938faa649e59fa439e8154e8025eb
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
+
+requirements:
+  host:
+    - python >=3.11,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.11.0,<4.0.0
+    - snakemake-interface-common >=1.14.1,<2.0.0
+    - snakemake-interface-executor-plugins >=9.0.0,<10.0.0
+    - python-kubernetes >=27.2.0,<28.0.0
+
+test:
+  imports:
+    - snakemake_executor_plugin_kubernetes
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/snakemake/snakemake-executor-plugin-kubernetes
+  summary: A snakemake executor plugin for submission of jobs to Kubernetes
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - koesterlab
diff --git a/recipes/snakemake-executor-plugin-lsf-jobstep/meta.yaml b/recipes/snakemake-executor-plugin-lsf-jobstep/meta.yaml
new file mode 100644
index 0000000000000..27f1ea3595b3f
--- /dev/null
+++ b/recipes/snakemake-executor-plugin-lsf-jobstep/meta.yaml
@@ -0,0 +1,41 @@
+{% set name = "snakemake-executor-plugin-lsf-jobstep" %}
+{% set version = "0.1.10" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snakemake_executor_plugin_lsf_jobstep-{{ version }}.tar.gz
+  sha256: 72d29f3cd22061a61f138bba0ab6803b3fb7017f9475276acfa40ad20d23f44d
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
+
+requirements:
+  host:
+    - python >=3.11,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.11.0,<4.0.0
+    - snakemake-interface-common >=1.17.1,<2.0.0
+    - snakemake-interface-executor-plugins >=9.0.0,<10.0.0
+
+test:
+  imports:
+    - snakemake_executor_plugin_lsf_jobstep
+
+about:
+  home: https://github.com/BEFH/snakemake-executor-plugin-lsf-jobstep
+  summary: A Snakemake executor plugin for running bjobs jobs inside of LSF jobs (meant for internal use by snakemake-executor-plugin-lsf)
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - BFH
diff --git a/recipes/snakemake-executor-plugin-lsf/meta.yaml b/recipes/snakemake-executor-plugin-lsf/meta.yaml
new file mode 100644
index 0000000000000..0147eba27eb50
--- /dev/null
+++ b/recipes/snakemake-executor-plugin-lsf/meta.yaml
@@ -0,0 +1,43 @@
+{% set name = "snakemake-executor-plugin-lsf" %}
+{% set version = "0.2.5" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snakemake_executor_plugin_lsf-{{ version }}.tar.gz
+  sha256: 1aa0ee468f8d2a2011930d114787185514c44bee3f8a16f3fd0d2b04f5844016
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
+
+requirements:
+  host:
+    - python >=3.11,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.11.0,<4.0.0
+    - snakemake-interface-common >=1.17.1,<2.0.0
+    - snakemake-interface-executor-plugins >=9.0.0,<10.0.0
+    - snakemake-executor-plugin-lsf-jobstep >=0.1.10,<0.2.0
+    - throttler >=1.2.2,<2.0.0
+
+test:
+  imports:
+    - snakemake_executor_plugin_lsf
+
+about:
+  home: https://github.com/befh/snakemake-executor-plugin-lsf
+  summary: A Snakemake executor plugin for submitting jobs to a LSF cluster.
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - BEFH
diff --git a/recipes/snakemake-executor-plugin-slurm-jobstep/meta.yaml b/recipes/snakemake-executor-plugin-slurm-jobstep/meta.yaml
new file mode 100644
index 0000000000000..1e48b4f3c9c2b
--- /dev/null
+++ b/recipes/snakemake-executor-plugin-slurm-jobstep/meta.yaml
@@ -0,0 +1,45 @@
+{% set name = "snakemake-executor-plugin-slurm-jobstep" %}
+{% set version = "0.2.1" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snakemake_executor_plugin_slurm_jobstep-{{ version }}.tar.gz
+  sha256: 58894d52b5998a34fa6f60ec511ff0bfde4a9ec96714bcaa3cd2f46cf8a33859
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
+
+requirements:
+  host:
+    - python >=3.11,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.11.0,<4.0.0
+    - snakemake-interface-common >=1.13.0,<2.0.0
+    - snakemake-interface-executor-plugins >=9.0.0,<10.0.0
+
+test:
+  imports:
+    - snakemake_executor_plugin_slurm_jobstep
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/snakemake/snakemake-executor-plugin-slurm-jobstep
+  summary: A Snakemake executor plugin for running srun jobs inside of SLURM jobs (meant for internal use by snakemake-executor-plugin-slurm)
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - koesterlab
diff --git a/recipes/snakemake-executor-plugin-slurm/meta.yaml b/recipes/snakemake-executor-plugin-slurm/meta.yaml
new file mode 100644
index 0000000000000..d320b849936ad
--- /dev/null
+++ b/recipes/snakemake-executor-plugin-slurm/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "snakemake-executor-plugin-slurm" %}
+{% set version = "0.5.1" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snakemake_executor_plugin_slurm-{{ version }}.tar.gz
+  sha256: 99a60264d58da558275ea1315fecaf536180a951f8224b0a1294e4847c2e071b
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
+
+requirements:
+  host:
+    - python >=3.11,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.11.0,<4.0.0
+    - snakemake-interface-common >=1.13.0,<2.0.0
+    - snakemake-interface-executor-plugins >=9.1.1,<10.0.0
+    - snakemake-executor-plugin-slurm-jobstep >=0.2.0,<0.3.0
+    - throttler >=1.2.2,<2.0.0
+
+test:
+  imports:
+    - snakemake_executor_plugin_slurm
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/snakemake/snakemake-executor-plugin-slurm
+  summary: A Snakemake executor plugin for submitting jobs to a SLURM cluster.
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - koesterlab
diff --git a/recipes/snakemake-interface-common/meta.yaml b/recipes/snakemake-interface-common/meta.yaml
new file mode 100644
index 0000000000000..854fad21ef1e9
--- /dev/null
+++ b/recipes/snakemake-interface-common/meta.yaml
@@ -0,0 +1,39 @@
+{% set name = "snakemake-interface-common" %}
+{% set version = "1.17.2" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snakemake_interface_common-{{ version }}.tar.gz
+  sha256: 7a2bba88df98c1a0a5cec89b835c62dd2e6e72c1fb8fd104fe73405c800b87c0
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vvv
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.8,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.8.0,<4.0.0
+    - argparse-dataclass >=2.0.0,<3.0.0
+    - configargparse >=1.7,<2.0
+
+
+test:
+  imports:
+    - snakemake_interface_common
+
+about:
+  home: https://github.com/snakemake/snakemake-interface-common
+  summary: Common functions and classes for Snakemake and its plugins
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
diff --git a/recipes/snakemake-interface-executor-plugins/meta.yaml b/recipes/snakemake-interface-executor-plugins/meta.yaml
new file mode 100644
index 0000000000000..fd5036d4ce8bb
--- /dev/null
+++ b/recipes/snakemake-interface-executor-plugins/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "snakemake-interface-executor-plugins" %}
+{% set version = "9.1.1" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snakemake_interface_executor_plugins-{{ version }}.tar.gz
+  sha256: 357c3b1d633b26241693a4e5ce291fbe198c03a54a30acfa86dd97dc252fa2c6
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
+  number: 0
+
+requirements:
+  host:
+    - python >=3.11,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.11.0,<4.0.0
+    - argparse-dataclass >=2.0.0,<3.0.0
+    - snakemake-interface-common >=1.12.0,<2.0.0
+    - throttler >=1.2.2,<2.0.0
+
+test:
+  imports:
+    - snakemake_interface_executor_plugins
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  summary: This package provides a stable interface for interactions between Snakemake and its executor plugins.
+  home: https://github.com/snakemake/snakemake-interface-executor-plugins
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - johanneskoester
diff --git a/recipes/snakemake-interface-report-plugins/meta.yaml b/recipes/snakemake-interface-report-plugins/meta.yaml
new file mode 100644
index 0000000000000..16c4632e6a84d
--- /dev/null
+++ b/recipes/snakemake-interface-report-plugins/meta.yaml
@@ -0,0 +1,44 @@
+{% set name = "snakemake-interface-report-plugins" %}
+{% set version = "1.0.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snakemake_interface_report_plugins-{{ version }}.tar.gz
+  sha256: 02311cdc4bebab2a1c28469b5e6d5c6ac6e9c66998ad4e4b3229f1472127490f
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("snakemake-interface-report-plugins", max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.11,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.11.0,<4.0.0
+    - snakemake-interface-common >=1.16.0,<2.0.0
+
+test:
+  imports:
+    - snakemake_interface_report_plugins
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  summary: This package provides a stable interface for interactions between Snakemake and its report plugins.
+  home: https://github.com/snakemake/snakemake-interface-report-plugins
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - koesterlab
diff --git a/recipes/snakemake-interface-storage-plugins/meta.yaml b/recipes/snakemake-interface-storage-plugins/meta.yaml
new file mode 100644
index 0000000000000..f837051ef43ce
--- /dev/null
+++ b/recipes/snakemake-interface-storage-plugins/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "snakemake-interface-storage-plugins" %}
+{% set version = "3.2.2" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snakemake_interface_storage_plugins-{{ version }}.tar.gz
+  sha256: fc8a70ef5b1fd054bc64270925228e2054158da9bcf8fa8bd4be36d93a82678b
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("snakemake-interface-storage-plugins", max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.11,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.11.0,<4.0.0
+    - snakemake-interface-common >=1.12.0,<2.0.0
+    - wrapt >=1.15.0,<2.0.0
+    - reretry >=0.11.8,<0.12.0
+    - throttler >=1.2.2,<2.0.0
+
+test:
+  imports:
+    - snakemake_interface_storage_plugins
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  summary: This package provides a stable interface for interactions between Snakemake and its storage plugins.
+  home: https://github.com/snakemake/snakemake-interface-storage-plugins
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - koesterlab
diff --git a/recipes/snakemake-storage-plugin-azure/meta.yaml b/recipes/snakemake-storage-plugin-azure/meta.yaml
new file mode 100644
index 0000000000000..a02ed329f2e5a
--- /dev/null
+++ b/recipes/snakemake-storage-plugin-azure/meta.yaml
@@ -0,0 +1,48 @@
+{% set name = "snakemake-storage-plugin-azure" %}
+{% set version = "0.1.5" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snakemake_storage_plugin_azure-{{ version }}.tar.gz
+  sha256: c200d5ffc1d593083028014becba83ace43749a666f394e567435b7299566568
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.11,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.11.0,<4.0.0
+    - snakemake-interface-common >=1.15.0,<2.0.0
+    - snakemake-interface-storage-plugins >=3.0.0,<4.0.0
+    - azure-storage-blob >=12.19.0,<13.0.0
+    - azure-core >=1.29.5,<2.0.0
+    - azure-identity >=1.15.0,<2.0.0
+
+test:
+  # We do not test the import as the plugin needs snakemake for importing, but adding
+  # it would create a circular dependency.
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/snakemake/snakemake-storage-plugin-azure
+  summary: A Snakemake storage plugin to read and write from Azure Blob Storage
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - koesterlab
diff --git a/recipes/snakemake-storage-plugin-fs/meta.yaml b/recipes/snakemake-storage-plugin-fs/meta.yaml
new file mode 100644
index 0000000000000..0790f6203c2b5
--- /dev/null
+++ b/recipes/snakemake-storage-plugin-fs/meta.yaml
@@ -0,0 +1,48 @@
+{% set name = "snakemake-storage-plugin-fs" %}
+{% set version = "1.0.4" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snakemake_storage_plugin_fs-{{ version }}.tar.gz
+  sha256: d9467d2d8f00689c6af6478f67f693373ce3cb0404d10c6d783997465d5110a9
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.11,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.11.0,<4.0.0
+    - snakemake-interface-common >=1.17.0,<2.0.0
+    - snakemake-interface-storage-plugins >=3.1.0,<4.0.0
+    - sysrsync >=1.1.1,<2.0.0
+    - reretry >=0.11.8,<0.12.0
+
+test:
+  # We do not test the import as the plugin needs snakemake for importing, but adding
+  # it would create a circular dependency.
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/snakemake/snakemake-storage-plugin-fs
+  summary: 'A Snakemake storage plugin that reads and writes from a locally mounted filesystem using rsync'
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - koesterlab
diff --git a/recipes/snakemake-storage-plugin-ftp/meta.yaml b/recipes/snakemake-storage-plugin-ftp/meta.yaml
new file mode 100644
index 0000000000000..2cb90d57b7c10
--- /dev/null
+++ b/recipes/snakemake-storage-plugin-ftp/meta.yaml
@@ -0,0 +1,46 @@
+{% set name = "snakemake-storage-plugin-ftp" %}
+{% set version = "0.1.2" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snakemake_storage_plugin_ftp-{{ version }}.tar.gz
+  sha256: e3097e19dbe9ed4c8cf794e1d4594c3032ee7f7a9f7797dfb0d2556f0aafe07c
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.11,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.11.0,<4.0.0
+    - snakemake-interface-common >=1.15.1,<2.0.0
+    - snakemake-interface-storage-plugins >=3.0.0,<4.0.0
+    - ftputil >=5.0.4,<6.0.0
+
+test:
+  # We do not test the import as the plugin needs snakemake for importing, but adding
+  # it would create a circular dependency.
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/snakemake/snakemake-storage-plugin-ftp
+  summary: A Snakemake plugin for handling input and output via FTP
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - koesterlab
diff --git a/recipes/snakemake-storage-plugin-gcs/meta.yaml b/recipes/snakemake-storage-plugin-gcs/meta.yaml
new file mode 100644
index 0000000000000..b269805339223
--- /dev/null
+++ b/recipes/snakemake-storage-plugin-gcs/meta.yaml
@@ -0,0 +1,48 @@
+{% set name = "snakemake-storage-plugin-gcs" %}
+{% set version = "1.0.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snakemake_storage_plugin_gcs-{{ version }}.tar.gz
+  sha256: a5ca15813a74ae18d41cc5dbde0792e2ec5bfc32e8615d458b41dded1b430e14
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.11,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.11.0,<4.0.0
+    - snakemake-interface-common >=1.14.2,<2.0.0
+    - snakemake-interface-storage-plugins >=3.0.0,<4.0.0
+    - google-cloud-storage >=2.12.0,<3.0.0
+    - google-crc32c >=1.1.2,<2.0.0
+
+test:
+  # We do not test the import as the plugin needs snakemake for importing, but adding
+  # it would create a circular dependency.
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/snakemake/snakemake-storage-plugin-gcs
+  summary: A Snakemake storage plugin for Google Cloud Storage
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - koesterlab
diff --git a/recipes/snakemake-storage-plugin-http/meta.yaml b/recipes/snakemake-storage-plugin-http/meta.yaml
new file mode 100644
index 0000000000000..a7aee9ddf4eaf
--- /dev/null
+++ b/recipes/snakemake-storage-plugin-http/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "snakemake-storage-plugin-http" %}
+{% set version = "0.2.3" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snakemake_storage_plugin_http-{{ version }}.tar.gz
+  sha256: e4944a7c134e98515d9473c867c4ce071e3b625a5a9002a00da6ac917bc0c0ad
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 1
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.11.0,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.11.0,<4.0.0
+    - requests >=2.31.0,<3.0.0
+    - requests-oauthlib >=1.3.1,<2.0.0
+    - snakemake-interface-common >=1.14.0,<2.0.0
+    - snakemake-interface-storage-plugins >=3.0.0,<4.0.0
+
+test:
+  # We do not test the import as the plugin needs snakemake for importing, but adding
+  # it would create a circular dependency.
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  summary: Snakemake storage plugin for donwloading input files from HTTP(s).
+  home: https://github.com/snakemake/snakemake-storage-plugin-http
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - koesterlab
diff --git a/recipes/snakemake-storage-plugin-irods/meta.yaml b/recipes/snakemake-storage-plugin-irods/meta.yaml
new file mode 100644
index 0000000000000..698ed88bc3071
--- /dev/null
+++ b/recipes/snakemake-storage-plugin-irods/meta.yaml
@@ -0,0 +1,46 @@
+{% set name = "snakemake-storage-plugin-irods" %}
+{% set version = "0.1.2" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snakemake_storage_plugin_irods-{{ version }}.tar.gz
+  sha256: e5ceac168095bf7a2ef2d82d9d74ddfc6780c1665ecaa75b16041fc2428ead77
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.11,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.11.0,<4.0.0
+    - snakemake-interface-common >=1.15.0,<2.0.0
+    - snakemake-interface-storage-plugins >=3.0.0,<4.0.0
+    - python-irodsclient >=1.1.9,<2.0.0
+
+test:
+  # We do not test the import as the plugin needs snakemake for importing, but adding
+  # it would create a circular dependency.
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/snakemake/snakemake-storage-plugin-irods
+  summary: A Snakemake plugin for handling input and output on iRODS
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - koesterlab
diff --git a/recipes/snakemake-storage-plugin-s3/meta.yaml b/recipes/snakemake-storage-plugin-s3/meta.yaml
new file mode 100644
index 0000000000000..998e66cac163b
--- /dev/null
+++ b/recipes/snakemake-storage-plugin-s3/meta.yaml
@@ -0,0 +1,50 @@
+{% set name = "snakemake-storage-plugin-s3" %}
+{% set version = "0.2.11" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snakemake_storage_plugin_s3-{{ version }}.tar.gz
+  sha256: edbac21ca22d2e674eaadf05f21c611891df37366d4fbd6a712d79172d788895
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.11,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.11.0,<4.0.0
+    - snakemake-interface-common >=1.14.0,<2.0.0
+    - snakemake-interface-storage-plugins >=3.2.2,<4.0.0
+    - boto3 >=1.33.0,<2.0.0
+    - botocore >=1.33.0,<2.0.0
+    - urllib3 >=2.0,<2.2
+
+test:
+  # We do not test the import as the plugin needs snakemake for importing, but adding
+  # it would create a circular dependency.
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  summary: A Snakemake storage plugin for S3 API storage (AWS S3, MinIO, etc.)
+  home: https://github.com/snakemake/snakemake-storage-plugin-s3
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  doc_url: https://snakemake.github.io/snakemake-plugin-catalog/plugins/storage/s3.html
+
+extra:
+  recipe-maintainers:
+    - koesterlab
diff --git a/recipes/snakemake-storage-plugin-sftp/meta.yaml b/recipes/snakemake-storage-plugin-sftp/meta.yaml
new file mode 100644
index 0000000000000..78dd48ec129d7
--- /dev/null
+++ b/recipes/snakemake-storage-plugin-sftp/meta.yaml
@@ -0,0 +1,46 @@
+{% set name = "snakemake-storage-plugin-sftp" %}
+{% set version = "0.1.2" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snakemake_storage_plugin_sftp-{{ version }}.tar.gz
+  sha256: 1b5f99a6baf334d74e209d6ec8a59e495e56098cf6e9a19954e472ba1501525c
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.11,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.11.0,<4.0.0
+    - snakemake-interface-common >=1.14.3,<2.0.0
+    - snakemake-interface-storage-plugins >=3.0.0,<4.0.0
+    - pysftp >=0.2.9,<0.3.0
+
+test:
+  # We do not test the import as the plugin needs snakemake for importing, but adding
+  # it would create a circular dependency.
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/snakemake/snakemake-storage-plugin-sftp
+  summary: 'A Snakemake storage plugin that handles files on an SFTP server. '
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - koesterlab
diff --git a/recipes/snakemake-storage-plugin-zenodo/meta.yaml b/recipes/snakemake-storage-plugin-zenodo/meta.yaml
new file mode 100644
index 0000000000000..c5437300cae37
--- /dev/null
+++ b/recipes/snakemake-storage-plugin-zenodo/meta.yaml
@@ -0,0 +1,46 @@
+{% set name = "snakemake-storage-plugin-zenodo" %}
+{% set version = "0.1.2" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snakemake_storage_plugin_zenodo-{{ version }}.tar.gz
+  sha256: 3675e76ae5dc930664bbcc1132a957c6490199c366e4e1e607d1491a7a46cf3d
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.11,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.11.0,<4.0.0
+    - snakemake-interface-common >=1.14.4,<2.0.0
+    - snakemake-interface-storage-plugins >=3.0.0,<4.0.0
+    - requests >=2.31.0,<3.0.0
+
+test:
+  # We do not test the import as the plugin needs snakemake for importing, but adding
+  # it would create a circular dependency.
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/snakemake/snakemake-storage-plugin-zenodo
+  summary: A Snakemake storage plugin for reading from and writing to zenodo.org
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - koesterlab
diff --git a/recipes/snakemake/meta.yaml b/recipes/snakemake/meta.yaml
index ede8b90796e64..7af1660df8c3b 100644
--- a/recipes/snakemake/meta.yaml
+++ b/recipes/snakemake/meta.yaml
@@ -1,41 +1,34 @@
-{% set version = "7.31.0" %}
+# Attention: when upgrading the version, please compare below dependencies with
+# https://github.com/snakemake/snakemake/blob/{version}/setup.cfg
+{% set name = "snakemake" %}
+{% set version = "8.12.0" %}
 
 package:
-  name: snakemake
+  name: {{ name }}
   version: {{ version }}
 
 source:
-  url: https://pypi.io/packages/source/s/snakemake/snakemake-{{ version }}.tar.gz
-  sha256: ee7b413559935d00326c78ead1004781cbb262eae1eab02fc4939e8f502cc3b4
+  url: https://pypi.io/packages/source/s/{{ name }}/snakemake-{{ version }}.tar.gz
+  sha256: d76d8751f96e0b947d1e7e40aac74e1b550dffda136ed606ac05610be9169da2
 
 build:
-  number: 1
+  number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage("snakemake", max_pin="x") }}
 
 requirements:
   run:
     - snakemake-minimal ={{ version }}
-    # optional dependencies needed for the full experience
-    # require this dropbox version to ensure that a conda doesn't pick up the
-    # outdated version available
-    - dropbox >=7.2.1
-    - ftputil >=3.2
-    - filechunkio >=1.6
-    - pysftp >=0.2.8
-    - psutil
-    - aioeasywebdav
     # pandas is optional, but required for many workflows
     - pandas
-    - python-irodsclient
-    - google-cloud-storage
-    - google-api-python-client
-    - google-crc32c
-    - boto3
-    - jsonschema
-    - pygments
-    - oauth2client
-    - slacker
+    # options.extras_require: messaging
+    - slack_sdk
+    # options.extras_require: pep
+    - eido
     - peppy
+    # options.extras_require: reports
+    - pygments
 
 test:
   imports:
@@ -50,8 +43,12 @@ test:
     - rm -rf .snakemake Snakefile report.html
 
 about:
-  home: https://snakemake.github.io
+  home: "https://snakemake.github.io"
   license: MIT
+  license_family: MIT
+  license_file: LICENSE.md
+  dev_url: "https://github.com/snakemake/snakemake"
+  doc_url: "https://snakemake.readthedocs.io/en/stable"
   summary: A popular workflow management system aiming at full in-silico reproducibility.
   description: |
         Snakemake is a workflow management system that aims to reduce the complexity of creating 
@@ -63,9 +60,8 @@ about:
 extra:
   identifiers:
     - doi:10.1093/bioinformatics/bts480
-    - biotools:Snakemake
+    - biotools:snakemake
   skip-lints:
-    - uses_setuptools  # uses pkg_resoures during run time
     - should_be_noarch_python  # toplevel metapackage is noarch:generic
   recipe-maintainers:
     - johanneskoester
@@ -76,44 +72,49 @@ outputs:
 
     build:
       noarch: python
-      script: python -m pip install --no-deps --ignore-installed .
+      script: python -m pip install --no-deps --no-build-isolation --no-cache-dir . -vvv
       entry_points:
-        - snakemake = snakemake:main
-        - snakemake-bash-completion = snakemake:bash_completion
+        - snakemake = snakemake.cli:main
+      run_exports:
+        - {{ pin_subpackage("snakemake-minimal", max_pin="x") }}
 
     requirements:
       host:
-        - python >=3.9
+        - python >=3.11
         - pip
-        - setuptools
       run:
-        # Keep in sync with snakemake/setup.cfg
-        - python >=3.9
-        - setuptools
-        - wrapt
-        - requests
-        - docutils
-        - pyyaml
-        - datrie
-        - requests >=2.8.1
-        - psutil
-        - throttler
-        - configargparse
+        # Keep in sync with snakemake/setup.cfg 
+        - python >=3.11,<3.13
         - appdirs
-        - jsonschema
+        - immutables
+        - configargparse
+        - connection_pool >=0.0.3
+        - datrie
+        - docutils
         - gitpython
-        - toposort >=1.10
+        - humanfriendly
+        - jinja2 >=3.0,<4.0
+        - jsonschema
         - nbformat
-        - connection_pool >=0.0.3
         - packaging
-        - pulp >=2.0
-        - smart_open >=3.0
+        - psutil
+        - pulp >=2.3.1,<2.9
+        - pyyaml
+        - requests >=2.8.1
+        - reretry
+        - smart_open >=4.0,<8.0
+        - snakemake-interface-executor-plugins >=9.1.0,<10.0.0
+        - snakemake-interface-common >=1.17.0,<2.0
+        - snakemake-interface-storage-plugins >=3.1.0,<4.0
+        - snakemake-interface-report-plugins >=1.0.0,<2.0.0
         - stopit
         - tabulate
-        - jinja2 >=3.0,<4.0
-        - yte >=1.2,<2.0
-        - reretry
-        - humanfriendly
+        - throttler
+        - toposort >=1.10,<2.0
+        - wrapt
+        - yte >=1.5.1,<2.0
+        - dpath >=2.1.6,<3.0.0
+        - conda-inject >=1.3.1,<2.0
 
     test:
       imports:
@@ -124,8 +125,12 @@ outputs:
         - snakemake --version | grep "{{ version }}"
     
     about:
-      home: https://snakemake.github.io
+      home: "https://snakemake.github.io"
       license: MIT
+      license_family: MIT
+      license_file: LICENSE.md
+      dev_url: "https://github.com/snakemake/snakemake"
+      doc_url: "https://snakemake.readthedocs.io/en/stable"
       summary: A popular workflow management system aiming at full in-silico reproducibility.
       description: |
         Snakemake is a workflow management system that aims to reduce the complexity
diff --git a/recipes/snakesv/build.sh b/recipes/snakesv/build.sh
old mode 100644
new mode 100755
index 6dc9d68ab7c3f..369a431cd5030
--- a/recipes/snakesv/build.sh
+++ b/recipes/snakesv/build.sh
@@ -4,7 +4,7 @@ mkdir -p $PREFIX/bin
 mkdir -p $PREFIX/opt/snakeSV/
 
 # Full path to the Snakefile
-sed -i "s|workflow/Snakefile|$PREFIX/opt/snakeSV/workflow/Snakefile|g" snakeSV
+sed -i "s|\$(dirname \$(which snakeSV))|$PREFIX/opt/snakeSV|g" snakeSV
 
 cp -r * $PREFIX/opt/snakeSV/
 ln -s $PREFIX/opt/snakeSV/snakeSV $PREFIX/bin/
diff --git a/recipes/snakesv/meta.yaml b/recipes/snakesv/meta.yaml
old mode 100644
new mode 100755
index 47668a7ed7c9d..d838376d65d19
--- a/recipes/snakesv/meta.yaml
+++ b/recipes/snakesv/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "snakeSV" %}
-{% set version = "0.6" %}
+{% set version = "0.8" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,18 +7,22 @@ package:
 
 source:
   url: https://github.com/RajLabMSSM/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 833c52a5acb4a167bd14a9f3e377b95f75e306583736b479d3a82b7a93849ebe
+  sha256: ebddad04d499e3d0a3e65a0615bfeac2697505bbb3a02a74d91dc711e82df481
 
 build:
-  number: 0
+  number: 1
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('snakesv', max_pin="x.x") }}
 
 requirements:
   run:
-    - snakemake >=7.0.1
-    - mamba >=0.22.0
-    - pandas >=1.4.1
-    - bcftools >=1.15.1
+    - snakemake =7.32.4
+    - bcftools =1.9
+    - python =3.11.6
+    - mamba =1.4.2
+  build:
+    - conda-build >=3.27
 
 test:
   commands:
@@ -26,6 +30,7 @@ test:
 
 about:
   home: https://github.com/RajLabMSSM/snakeSV/
-  license: "The MIT License (MIT)"
+  license: MIT
+  license_family: MIT
   summary: "snakeSV: Flexible framework for large-scale SV discovery"
 
diff --git a/recipes/snaketool-utils/meta.yaml b/recipes/snaketool-utils/meta.yaml
new file mode 100644
index 0000000000000..2d9130b89bfb3
--- /dev/null
+++ b/recipes/snaketool-utils/meta.yaml
@@ -0,0 +1,44 @@
+{% set name = "snaketool-utils" %}
+{% set version = "0.0.5" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snaketool_utils-{{ version }}.tar.gz
+  sha256: a686300efcec715fba806479b10dde0f98781a90600c7bf7cadcca1ebb655305
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('snaketool-utils', max_pin='x') }}
+
+requirements:
+  host:
+    - python >=3.7
+    - pip
+  run:
+    - python >=3.7
+    - pyyaml >=6.0
+    - click >=8.1.3
+
+test:
+  imports:
+    - snaketool_utils
+  commands:
+    - pip check
+  requires:
+    - pip
+
+about:
+  home: https://github.com/beardymcjohnface/snaketool-utils
+  summary: Utility functions for Snaketool CLI for bioinformatics tools
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - beardymcjohnface
diff --git a/recipes/snapatac2/meta.yaml b/recipes/snapatac2/meta.yaml
new file mode 100644
index 0000000000000..26323292e6ebe
--- /dev/null
+++ b/recipes/snapatac2/meta.yaml
@@ -0,0 +1,63 @@
+{% set name = "snapatac2" %}
+{% set version = "2.5.3" %}
+{% set sha256 = "14c4083a42fe79869528045dbbf84e4d997357907b51713620f9b63c11e20331" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snapatac2-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  script: {{ PYTHON }} -m pip install . -vvv --no-build-isolation --no-deps
+  run_exports:
+    - {{ pin_subpackage('snapatac2', max_pin="x") }}
+
+requirements:
+  build:
+    - make
+    - cmake
+    - rust
+    - {{ compiler('c') }}
+  host:
+    - python
+    - pip
+    - setuptools-rust
+  run:
+    - python
+    - anndata
+    - scanpy
+    - matplotlib-base
+    - pandas
+    - scipy
+    - seaborn
+    - h5py
+    - scikit-learn
+    - numba
+    - numpy
+    - umap-learn
+    - packaging
+    - rustworkx
+    - pooch
+    - typing_extensions
+
+test:
+  imports:
+    - snapatac2
+
+about:
+  home: https://github.com/kaizhang/SnapATAC2
+  summary: "Python/Rust package for single-cell epigenomics analysis"
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  doc_url: https://kzhang.org/SnapATAC2/
+  dev_url: https://github.com/kaizhang/SnapATAC2
+
+extra:
+  identifiers:
+    - biotools:snapatac
+    - doi:10.1101/2023.09.11.557221
diff --git a/recipes/sneakernet-qc/build.sh b/recipes/sneakernet-qc/build.sh
new file mode 100644
index 0000000000000..ebc02f9c1a0c2
--- /dev/null
+++ b/recipes/sneakernet-qc/build.sh
@@ -0,0 +1,39 @@
+#!/bin/bash
+
+perl Makefile.PL
+make
+make install
+
+mkdir -pv $PREFIX/bin 
+mkdir -pv $PREFIX/lib/perl5
+mkdir -pv $PREFIX/db/{fasta,blast}
+find $PREFIX -type d -exec chmod -v 775 {} \;
+
+files=$(\ls -1 SneakerNet.plugins/*.pl SneakerNet.plugins/*.py SneakerNet.plugins/*.sh scripts/*.pl)
+ls -lh $files
+chmod -v +x $files
+
+for i in $files; do
+  cp -nv $i $PREFIX/bin/$(basename $i)
+done
+mkdir -pv $PREFIX/lib/perl5
+cp -v lib/perl5/SneakerNet.pm $PREFIX/lib/perl5
+
+# SneakerNet depends on plugins in the SneakerNet.plugins
+# subdirectory. Hack this path by just providing a symlink
+ln -sv $PREFIX/bin $PREFIX/SneakerNet.plugins
+
+# Need to keep the conf.bak and copy it to 
+# the working copy conf.
+cp -r config.bak $PREFIX/config.bak
+cp -r config.bak $PREFIX/config
+cat $PREFIX/config.bak/settings.conf | \
+  sed '/KRAKEN_DEFAULT_DB/d' > $PREFIX/config/settings.conf
+
+KALAMARI_VER=$(downloadKalamari.pl --version)
+KRAKEN_DEFAULT_DB="$PREFIX/share/kalamari-$KALAMARI_VER/kalamari-kraken1"
+echo "KRAKEN_DEFAULT_DB  $KRAKEN_DEFAULT_DB" >> $PREFIX/config/settings.conf
+
+export PERL5LIB=$PERL5LIB:$PREFIX/lib/perl5
+
+
diff --git a/recipes/sneakernet-qc/meta.yaml b/recipes/sneakernet-qc/meta.yaml
new file mode 100644
index 0000000000000..f28e3cc117ec9
--- /dev/null
+++ b/recipes/sneakernet-qc/meta.yaml
@@ -0,0 +1,82 @@
+{% set name = "sneakernet-qc" %}
+{% set version = "0.25.0" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+build: 
+  number: 0
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
+
+source: 
+  url: https://github.com/lskatz/sneakernet/archive/v{{ version }}.tar.gz
+  sha256: 2798c87f9dd4c8863708f8417da89fc73f927c27da242e72b6a900c7a3c0a9fb
+
+test:
+  commands:
+    # Just see if the usage pops up, to inspect visually
+    - SneakerNetPlugins.pl --help || true
+    # This command for the version should give exit code 0
+    - SneakerNetPlugins.pl --version
+
+about:
+  license: MIT
+  home: https://github.com/lskatz/sneakernet
+  summary: "A QC pipeline for raw reads"
+
+extra:
+  recipe-maintainers:
+    - lskatz
+  identifiers: 
+    - doi:10.21105/joss.02334
+
+requirements:
+  build:
+    - make
+    - perl
+    - kalamari
+  run:
+    - blast
+    - bowtie2
+    - fastqc
+    - flash
+    - kalamari
+    - kma >=1.4
+    - kmc
+    - kraken >=1, <2
+    - krona
+    - lighter
+    - make
+    # - perl-bio-kmer # remove because requires jellyfish2 which is in conflict with kraken1
+    # - lskatz::perl-text-fuzzy
+    - mash >=2
+    - megahit
+    - mlst
+    - multiqc
+    - perl
+    - perl-app-cpanminus
+    - perl-bioperl
+    # unsure if I successfully removed this req but
+    # TODO remove cg-pipeline entirely
+    - perl-cg-pipeline
+    - perl-config-simple
+    - perl-file-slurp
+    - perl-gd
+    - perl-gdgraph
+    - perl-list-moreutils
+    - perl-moo
+    - perl-statistics-descriptive
+    - pilon
+    - prodigal
+    - python >=3.7
+    - quast
+    - salmid
+    - samclip
+    - seqtk
+    - shovill
+    - skesa >=2.4
+    - spades
+    - trimmomatic
diff --git a/recipes/sneakernet-qc/post-link.sh b/recipes/sneakernet-qc/post-link.sh
new file mode 100644
index 0000000000000..eb231749b40b6
--- /dev/null
+++ b/recipes/sneakernet-qc/post-link.sh
@@ -0,0 +1,13 @@
+echo "
+===================
+SneakerNet depends on the Kalamari database.
+This database is not included in the conda package.
+You can download the database by running the following commands:
+
+    downloadKalamari.sh
+    buildTaxonomy.sh
+    buildKraken1.sh
+
+===================
+
+" > $PREFIX/.messages.txt
diff --git a/recipes/sneep/meta.yaml b/recipes/sneep/meta.yaml
index 72f7d0a5bdf66..3b772e54672ed 100644
--- a/recipes/sneep/meta.yaml
+++ b/recipes/sneep/meta.yaml
@@ -1,19 +1,19 @@
-
-
-{% set name = "SNEEP"  %}
-{% set version = "0.4" %}
+{% set name = "SNEEP" %}
+{% set version = "1.1" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://github.com/SchulzLab/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz 
-  sha256: 2e896d32dbeb90916c46b25a8b406f37f223456259dca51a48ca305dadb4c63d  
+  url: https://github.com/SchulzLab/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 663a327abb928770c3252630a2ba3a0f69888f81e803567e32a2e5df09d94de9
 
 build:
   skip: True  # [py2k]
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('sneep', max_pin="x.x") }}
 
 requirements:
   build:
@@ -27,16 +27,17 @@ requirements:
    - python
    - numpy >=1.19
    - scipy
-   - matplotlib-base 
+   - matplotlib-base
    - bedtools >=2.27.1
 
 test:
   commands:
    - differentialBindingAffinity_multipleSNPs -h
- 
+
 about:
   home: https://github.com/SchulzLab/SNEEP
   dev_url: https://github.com/SchulzLab/SNEEP
   license: MIT
-  summary: Identify regulatory non-coding SNPs (rSNPs) 
+  license_family: MIT
+  summary: Identify regulatory non-coding SNPs (rSNPs)
 
diff --git a/recipes/sniffles/meta.yaml b/recipes/sniffles/meta.yaml
index a6fd59a98adda..59a64c05b52ab 100644
--- a/recipes/sniffles/meta.yaml
+++ b/recipes/sniffles/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "2.2" %}
-{% set sha256 = "744ee05017e0e95a4b2e21020d7a7277d8fabae2c2c20cd982287bb7775d8ecf" %}
+{% set version = "2.3.3" %}
+{% set sha256 = "b9218d37944a1d8b5b234c994d0303c42b04dc40e65bec33ba48601495ff891a" %}
 
 package:
   name: sniffles
@@ -12,15 +12,19 @@ source:
 build:
   number: 0
   noarch: python
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vvv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('sniffles', max_pin="x") }}
 
 requirements:
   host:
-    - python >=3.7
-    - setuptools
+    - python >=3.10
+    - pip
   run:
-    - python >=3.7
-    - pysam
+    - python >=3.10
+    - pysam >=0.21.0
+    - edlib >=1.3.9
+    - psutil >=5.9.4
 
 test:
   commands:
@@ -33,3 +37,5 @@ about:
   license_family: MIT
   summary: Sniffles is a structural variation caller using third generation sequencing
     (PacBio or Oxford Nanopore)
+  doc_url: https://github.com/fritzsedlazeck/Sniffles/wiki
+  dev_url: https://github.com/fritzsedlazeck/Sniffles
diff --git a/recipes/snipit/meta.yaml b/recipes/snipit/meta.yaml
index 2683fdd4fae04..6145586560291 100644
--- a/recipes/snipit/meta.yaml
+++ b/recipes/snipit/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "snipit" %}
-{% set version = "1.1.2" %}
+{% set version = "1.2" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,14 +7,16 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: e798e22d99ef1675034a1a12a87c39642a0c71dded2170e53efca58d6e2b9475
+  sha256: 92e4395a23ef5e55ae753868723daa3e68d5803a10db6ae27fc6722a99bcc708
 
 build:
   number: 0
   noarch: python
   entry_points:
     - snipit=snipit.command:main
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation"
+  run_exports:
+    - {{ pin_subpackage('snipit', max_pin="x") }}
 
 requirements:
   host:
@@ -35,7 +37,7 @@ test:
 
 about:
   home: "https://github.com/aineniamh/snipit"
-  license: GNU General Public License v3 (GPLv3)
+  license: GPL-3.0-or-later
   license_family: GPL3
   license_file: LICENSE
   summary: Visualize snps relative to a reference sequence
diff --git a/recipes/snippy/meta.yaml b/recipes/snippy/meta.yaml
index f20c442102beb..42b89cd854fde 100644
--- a/recipes/snippy/meta.yaml
+++ b/recipes/snippy/meta.yaml
@@ -12,8 +12,10 @@ source:
   sha256: '{{ sha256 }}'
 
 build:
-  number: 3
+  number: 4
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   run:
@@ -26,6 +28,7 @@ requirements:
     - parallel >=20170422
     - freebayes >=1.3.1
     - vcflib >=1.0.0_rc3,<=1.0.2 # crashes with v1.0.3 and later
+    - tabixpp 1.1.0 # vcflib requires libtabixpp.so.0, no longer available as of 1.1.2
     - snpeff >=4.3,<=5.0 # crashes with v5.1
     - vt >=0.5772
     - snp-sites >=2.4
diff --git a/recipes/snpeff/meta.yaml b/recipes/snpeff/meta.yaml
index 523a0584f97a9..6b38b7fac1b96 100644
--- a/recipes/snpeff/meta.yaml
+++ b/recipes/snpeff/meta.yaml
@@ -1,21 +1,18 @@
-{% set snpeff_ver = "v5_1d" %}
+{% set snpeff_ver = "v5_2" %}
 # NOTE: if the version contains a trailing letter, use the <d>.<d>.1<l> format
 # Please update recipes/snpsift as well!
-{% set version = "5.1d" %}
-{% set sha256 = "919e0595c08e86d1dd82279723c83cb872070244ee4ce0cb3167bde2b272893b" %}
-
-about:
-  home: 'http://snpeff.sourceforge.net/'
-  license: "LGPLv3"
-  summary: "Genetic variant annotation and effect prediction toolbox"
+{% set version = "5.2" %}
+{% set sha256 = "60ad2eec66c4f086b8cc7812e5654dce2dd500dd218774da490326e6a4e585f7" %}
 
 package:
   name: snpeff
   version: {{ version }}
 
 build:
-  number: 0
+  number: 1
   noarch: generic
+  run_exports:
+    - {{ pin_compatible('snpeff', max_pin="x.x") }}
 
 source:
   url: https://snpeff.blob.core.windows.net/versions/snpEff_{{ snpeff_ver }}_core.zip
@@ -29,8 +26,14 @@ requirements:
 
 test:
   commands:
+    - snpEff -help --dry-run
     - snpEff -version
 
+about:
+  home: 'http://snpeff.sourceforge.net/'
+  license: "LGPLv3"
+  summary: "Genetic variant annotation and effect prediction toolbox"
+
 extra:
   notes: 'The tool is available as command `snpEff`. Note that the package version is slightly different from upstream, this is to make sure conda will order the package versions correctly.'
   identifiers:
diff --git a/recipes/snpeff/snpeff.py b/recipes/snpeff/snpeff.py
index 1bd17fde71954..69f9830eba365 100755
--- a/recipes/snpeff/snpeff.py
+++ b/recipes/snpeff/snpeff.py
@@ -16,6 +16,10 @@
 
 jar_file = 'snpEff.jar'
 
+# Phone home has been disabled due to usage of an unregistered domain
+# If in the future the "phone home" feature becomes "opt-in" (e.g. -Log)
+# please remove the below to allow users to opt in
+disable_phone_home_opts = ['-noLog']
 
 default_jvm_mem_opts = ['-Xms512m', '-Xmx1g']
 
@@ -49,6 +53,7 @@ def jvm_opts(argv):
     prop_opts = []
     pass_args = []
     exec_dir = None
+    is_dryrun = False
 
     for arg in argv:
         if arg.startswith('-D'):
@@ -61,6 +66,8 @@ def jvm_opts(argv):
             exec_dir = arg.split('=')[1].strip('"').strip("'")
             if not os.path.exists(exec_dir):
                 shutil.copytree(real_dirname(sys.argv[0]), exec_dir, symlinks=False, ignore=None)
+        elif arg.startswith('--dry-run'):
+            is_dryrun = True
         else:
             pass_args.append(arg)
 
@@ -73,7 +80,7 @@ def jvm_opts(argv):
     if mem_opts == [] and getenv('_JAVA_OPTIONS') is None:
         mem_opts = default_jvm_mem_opts
 
-    return (mem_opts, prop_opts, pass_args, exec_dir)
+    return (mem_opts, prop_opts, pass_args, exec_dir, is_dryrun)
 
 
 def main():
@@ -85,7 +92,7 @@ def main():
     If the exec_dir dies not exist,
     we copy the jar file, lib, and resources to the exec_dir directory.
     """
-    (mem_opts, prop_opts, pass_args, exec_dir) = jvm_opts(sys.argv[1:])
+    (mem_opts, prop_opts, pass_args, exec_dir, is_dryrun) = jvm_opts(sys.argv[1:])
     jar_dir = exec_dir if exec_dir else real_dirname(sys.argv[0])
 
     if pass_args != [] and pass_args[0].startswith('eu'):
@@ -95,10 +102,13 @@ def main():
 
     jar_path = os.path.join(jar_dir, jar_file)
 
-    java_args = [java] + mem_opts + prop_opts + [jar_arg] + [jar_path] + pass_args
+    java_args = [java] + mem_opts + prop_opts + [jar_arg] + [jar_path] + pass_args + disable_phone_home_opts
 
-    sys.exit(subprocess.call(java_args))
+    if is_dryrun:
+        sys.exit(print(java_args))
+    else:
+        sys.exit(subprocess.call(java_args))
 
 
 if __name__ == '__main__':
-    main()
\ No newline at end of file
+    main()
diff --git a/recipes/snpsift/meta.yaml b/recipes/snpsift/meta.yaml
index e15d60db42487..fafb8edb71ec8 100644
--- a/recipes/snpsift/meta.yaml
+++ b/recipes/snpsift/meta.yaml
@@ -1,8 +1,8 @@
-{% set snpeff_ver = "v5_1d" %}
+{% set snpeff_ver = "v5_2" %}
 # NOTE: if the version contains a trailing letter, use the <d>.<d>.1<l> format
 # Please update recipes/snpeff as well
-{% set version = "5.1d" %}
-{% set sha256 = "919e0595c08e86d1dd82279723c83cb872070244ee4ce0cb3167bde2b272893b" %}
+{% set version = "5.2" %}
+{% set sha256 = "60ad2eec66c4f086b8cc7812e5654dce2dd500dd218774da490326e6a4e585f7" %}
 
 about:
   home: 'http://snpeff.sourceforge.net/SnpSift.html'
@@ -17,6 +17,8 @@ build:
   noarch: generic
   number: 0
   skip: False
+  run_exports:
+    - {{ pin_compatible('snpsift', max_pin="x.x") }}
 
 source:
   url: https://snpeff.blob.core.windows.net/versions/snpEff_{{ snpeff_ver }}_core.zip
diff --git a/recipes/soda-gallery/meta.yaml b/recipes/soda-gallery/meta.yaml
index 018c0cf1d077c..195229557cff0 100644
--- a/recipes/soda-gallery/meta.yaml
+++ b/recipes/soda-gallery/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "soda-gallery" %}
-{% set version = "1.0.1" %}
+{% set version = "1.2.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,33 +7,28 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 7b505ef8283e04fb381ad566b488aab3bd995641cf2b5c5380739d414ea6472e
+  sha256: dc71f503ecdf3d54ad00c9648176e98c0a1db37a18fe6fe7d5d1ea763340e92c
 
 build:
   noarch: python
   number: 0
   entry_points:
     - soda = soda.soda:main
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('soda-gallery', max_pin="x") }}
 
 requirements:
   host:
-    - beautifulsoup4 >=4.9.3
-    - certifi >=2021.5.30
-    - jinja2 >=3.0.1
-    - pdfminer >=20191125
-    - pdfrw >=0.4
     - pip
-    - python
-    - requests >=2.25.1
-    - requests-kerberos >=0.12.0
+    - python >=3
   run:
     - beautifulsoup4 >=4.9.3
-    - certifi >=2021.5.30
+    - certifi >=2024.2.2
     - jinja2 >=3.0.1
     - pdfminer >=20191125
     - pdfrw >=0.4
-    - python
+    - python >=3
     - requests >=2.25.1
     - requests-kerberos >=0.12.0
 
diff --git a/recipes/solote/meta.yaml b/recipes/solote/meta.yaml
new file mode 100644
index 0000000000000..4de70ca35900c
--- /dev/null
+++ b/recipes/solote/meta.yaml
@@ -0,0 +1,36 @@
+{% set version = "1.09" %} # Remember to update sha256 below
+
+package:
+  name: solote
+  version: {{ version }}
+
+build:
+  noarch: generic
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('solote', max_pin='x.x') }}
+  script: mkdir -p $PREFIX/bin ;  chmod a+x *.py ; mv *.py $PREFIX/bin
+
+source:
+  url: https://github.com/bvaldebenitom/SoloTE/archive/refs/tags/{{ version }}.tar.gz
+  sha256: 3812abd39022d78e124d6282d1a10057cda8de7b52a492d2b4fd00e93b2ae40f
+
+requirements:
+  run:
+    - python ==3.10
+    - samtools ==1.17
+    - pysam
+    - bedtools ==2.31.0
+    - r-base ==4.3.0
+    - pandas
+
+about:
+  home: https://github.com/bvaldebenitom/SoloTE
+  license: GPL 3
+  license_file: LICENSE
+  summary: |
+    A conversion utility is conveniently packaged with SoloTE, in order to tranform the RepeatMasker out file to the BED format required by SoloTE
+
+test:
+  commands:
+    - python $PREFIX/bin/SoloTE_pipeline.py --help > /dev/null 
diff --git a/recipes/solvebio/meta.yaml b/recipes/solvebio/meta.yaml
index d90000d748636..c478c817b61dc 100644
--- a/recipes/solvebio/meta.yaml
+++ b/recipes/solvebio/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "2.21.0" %}
-{% set sha256 = "649952c64453f666dedf7c63e408f68396fe6b739177013c33dbc48119b3b86f" %}
+{% set version = "2.27.0" %}
+{% set sha256 = "80c549fd4b98aafaac165c8a09de10c500110c2a85db9e461d40bc0d36fd0657" %}
 
 package:
   name: solvebio
@@ -14,7 +14,10 @@ build:
   number: 0
   entry_points:
     - solvebio = solvebio.cli.main:main
-  script: python -m pip install --no-deps --ignore-installed --no-cache-dir .
+    - solvebio-recipes = recipes.sync_recipes:sync_recipes
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation --no-cache-dir . -vvv
+  run_exports:
+    - {{ pin_subpackage("solvebio", max_pin="x.x") }}
 
 requirements:
   host:
@@ -27,19 +30,19 @@ requirements:
     - pyprind
     - pycurl >=7.0.0
     - requests >=2.0.0
-      # For dash, if enabled along with dash-auth
-      # - flask
-      # - flask-seasurf
+    - dash-auth <2
+    - dash-html-components
+    - dash-core-components
+    - flask
+    - flask-seasurf
 
 test:
   imports:
     - solvebio
     - solvebio.cli
     - solvebio.contrib
-      # Requires dash-auth, not yet packaged in conda
-      #- solvebio.contrib.dash
-      #- solvebio.contrib.dash.tests
-    - solvebio.contrib.vcf_parser
+    - solvebio.contrib.dash
+    - solvebio.contrib.dash.tests
     - solvebio.resource
     - solvebio.test
     - solvebio.utils
@@ -52,3 +55,4 @@ about:
   license_family: MIT
   license_file: LICENSE
   summary: The SolveBio Python client
+  doc_url: https://docs.solvebio.com/
diff --git a/recipes/somalier/build.sh b/recipes/somalier/build.sh
index a59d8cb1a809b..823e943c0604f 100644
--- a/recipes/somalier/build.sh
+++ b/recipes/somalier/build.sh
@@ -1,14 +1,6 @@
 #!/bin/sh
 
-if [[ ${target_platform}  == osx-64 ]] ; then
-    curl -SL https://github.com/brentp/somalier/archive/refs/tags/v${PKG_VERSION}.tar.gz -o somalier-latest.tar.gz
-    tar -xzf somalier-latest.tar.gz
-    cd somalier-${PKG_VERSION}
-    nimble --localdeps build -y --verbose -d:release
-else
-    curl -SL https://github.com/brentp/somalier/releases/download/v$PKG_VERSION/somalier -o somalier
-    chmod +x somalier
-fi
+nimble --localdeps build -y --verbose -d:release
 
 mkdir -p "${PREFIX}/bin"
 cp somalier "${PREFIX}/bin/"
diff --git a/recipes/somalier/meta.yaml b/recipes/somalier/meta.yaml
index 1b79526a098b1..32d5d2be59eec 100644
--- a/recipes/somalier/meta.yaml
+++ b/recipes/somalier/meta.yaml
@@ -1,22 +1,31 @@
-{% set version = "0.2.15" %}
+{% set version = "0.2.19" %}
 
 package:
   name: somalier
   version: {{ version }}
 
+source:
+  url: https://github.com/brentp/somalier/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: d93b34d15deb12d75ce4637857d4c74eb94572e0aac6303df539a345e3485fa8
+
 # Skip OSX following https://github.com/bioconda/bioconda-recipes/blob/73a14544ca8ef7926797b39259cb58b83732b7da/recipes/slivar/meta.yaml
 build:
-  number: 1
+  number: 0
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage("somalier", max_pin="x") }}
 
 requirements:
   build:
     - {{ compiler('c') }}
     - curl
-    - nim
+    - nim <2
   host:
-    - htslib >=1.10
+    - openblas
+    - htslib
   run:
+    - openblas
+    - htslib
 
 test:
   commands:
@@ -29,6 +38,7 @@ about:
   license: MIT
   summary: 'fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs.'
 
+  
 extra:
   identifiers:
     - doi:10.1186/s13073-020-00761-2
diff --git a/recipes/somaticseq/meta.yaml b/recipes/somaticseq/meta.yaml
index 7dd1f0e852f15..cd81c589f93e9 100644
--- a/recipes/somaticseq/meta.yaml
+++ b/recipes/somaticseq/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "somaticseq" %}
-{% set version = "3.7.3" %}
-{% set sha256 = "3721c03646496980a17141fe63a90e09ee10328edc1b692aae57bc07c2477e3c" %}
+{% set version = "3.7.4" %}
+{% set sha256 = "d072300bc403f12265fcadba74c4e6ba82175e749f22f66b46a1e32bf851e24d" %}
 
 package:
   name: {{ name|lower }}
@@ -13,7 +13,9 @@ source:
 build:
   number: 0
   noarch: python
-  script: {{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
+  run_exports:
+    - {{ pin_subpackage('somaticseq', max_pin="x") }}
 
 requirements:
   host:
@@ -25,7 +27,7 @@ requirements:
     - pysam
     - scipy
     - pandas
-    - xgboost
+    - xgboost >=1.4
     - r-base
     - r-ada
     - bedtools
@@ -45,7 +47,7 @@ test:
     - makeSomaticScripts.py --help
 
 about:
-  home: http://bioinform.github.io/somaticseq/
+  home: https://bioinform.github.io/somaticseq/
   license: BSD-2-Clause
   license_file: LICENSE.txt
   license_family: BSD
diff --git a/recipes/sonlib/build.sh b/recipes/sonlib/build.sh
index 3786386a73c83..79758c33af1fb 100644
--- a/recipes/sonlib/build.sh
+++ b/recipes/sonlib/build.sh
@@ -1,3 +1,14 @@
 #!/bin/bash
 
+set -eux
+
+# prevent header contamination
+rm -rf externalTools/
+
+make -j $CPU_COUNT shlib
+mkdir -p "$PREFIX"/{bin,lib,include/sonLib}
+install sonLib_daemonize.py "${PREFIX}/bin/"
+# some header files are named generic enough to warrant namespacing
+cp lib/*.h "${PREFIX}/include/sonLib/"
+cp lib/*.so "${PREFIX}/lib/"
 $PYTHON setup.py install --single-version-externally-managed --record=record.txt
diff --git a/recipes/sonlib/meta.yaml b/recipes/sonlib/meta.yaml
index 73ab7fdf6ae2d..21f47d0c439bb 100644
--- a/recipes/sonlib/meta.yaml
+++ b/recipes/sonlib/meta.yaml
@@ -1,27 +1,62 @@
+{% set name = "sonlib" %}
+# No version is tagged upstream yet, but commit e25181b changes the setup.py version to 2.0
+# For now, set the .dev version to number of commits on master since then:
+# git tag v2.0 e25181b && git describe --tags
+{% set version = "2.0.dev88" %}
+{% set commit = "9734083dffb180e3d76c323609c082b401336c0a" %}
+
 package:
-  name: sonlib
-  version: "1.1.0"
+  name: {{ name }}
+  version: {{ version }}
 
 source:
-  url: https://pypi.python.org/packages/c5/63/5c597eb4895ad59e6b57050de0dbc579b400e9e2bfc7a698d6b19d91caaf/sonLib-1.1.0.tar.gz
-  md5: b6051a1c664ad51f8620d80a3652aa05
+  url: https://github.com/ComparativeGenomicsToolkit/sonLib/archive/{{ commit }}.tar.gz
+  sha256: 6669056081bc96205de14b3c59c70c379dd57ab031d630480e8110e3d448628b
+  patches:
+    - patches/0001-Add-devendored-shared-library-build.patch
+    - patches/0002-Remove-need-for-CuTest-during-build.patch
 
 build:
-  noarch: python
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
+  build:
+    - {{ compiler('c') }}
+    - make
+    - pkg-config
   host:
-    - python <3
-    - pip
+    - python
+    - zlib
+    - quicktree
   run:
-    - python <3
+    - python
+    - networkx
 
 test:
   imports:
     - sonLib
+    - sonLib.bioio
+    - sonLib.misc
+    - sonLib.nxnewick
+    - sonLib.nxtree
+    - sonLib.tree
+  requires:
+    - {{ compiler('c') }}
+    - make
+    - zlib
+    - cutest
+  source_files:
+    - Makefile
+    - include.mk
+    - allTests.py
+    - bioioTest.py
+    - cigarsTest.py
+    - C/Makefile
+    - C/tests/*
 
 about:
-  home: https://github.com/benedictpaten/sonLib
+  home: https://github.com/ComparativeGenomicsToolkit/sonLib
   license: MIT
   summary: 'Small general purpose library for C and Python with focus on bioinformatics.'
diff --git a/recipes/sonlib/patches/0001-Add-devendored-shared-library-build.patch b/recipes/sonlib/patches/0001-Add-devendored-shared-library-build.patch
new file mode 100644
index 0000000000000..3de5a2a9f3c45
--- /dev/null
+++ b/recipes/sonlib/patches/0001-Add-devendored-shared-library-build.patch
@@ -0,0 +1,247 @@
+From 1e06372425d4492bc943b34ade7a9ef443cb1bec Mon Sep 17 00:00:00 2001
+From: Travis Wrightsman <tw493@cornell.edu>
+Date: Tue, 23 Jan 2024 21:04:37 -0500
+Subject: [PATCH] Add devendored shared library build
+
+---
+ C/Makefile                     | 14 ++++++++++++++
+ C/impl/stPhylogeny.c           |  6 +++---
+ C/tests/cigarsTest.c           | 10 +++++-----
+ C/tests/fastaCTest.c           |  6 +++---
+ C/tests/kvDatabaseTestCommon.c |  2 +-
+ C/tests/sonLibCommonTest.c     |  2 +-
+ C/tests/sonLibExceptTest.c     |  6 +++---
+ C/tests/sonLibGlobalsTest.h    |  2 +-
+ C/tests/stPhylogenyTest.c      |  4 ++--
+ C/tests/stThreadPoolTest.c     |  2 +-
+ C/tests/stUnionFindTest.c      |  2 +-
+ Makefile                       |  6 ++++++
+ setup.py                       |  2 +-
+ 13 files changed, 42 insertions(+), 22 deletions(-)
+
+diff --git a/C/Makefile b/C/Makefile
+index fcb627a..92856ac 100644
+--- a/C/Makefile
++++ b/C/Makefile
+@@ -1,4 +1,6 @@
+ rootPath = ..
++BINDIR = ../bin
++LIBDIR = ../lib
+ 
+ include ../include.mk
+ 
+@@ -23,6 +25,13 @@ LDLIBS = ${LIBDIR}/sonLib.a ${dblibs} ${LIBS}
+ 
+ all : ${LIBDIR}/sonLib.a ${testProgs} ${libHeadersDep}
+ 
++shlib : ${LIBDIR}/libsonLib.so
++
++tests-shlib:
++	${CC} ${CPPFLAGS} ${CFLAGS} ${LDFLAGS} -o ${rootPath}/sonLibTests tests/allTests.c ${libTests} -lsonLib -lcutest -lz -lm -lpthread
++	${CC} ${CPPFLAGS} ${CFLAGS} ${LDFLAGS} -o ${rootPath}/sonLib_cigarTest tests/cigarsTest.c -l sonLib -lz -lpthread
++	${CC} ${CPPFLAGS} ${CFLAGS} ${LDFLAGS} -o ${rootPath}/sonLib_fastaCTest tests/fastaCTest.c -l sonLib -lz -lpthread
++
+ # note: old Makefile put .o files in this directory, clean if for now (FIXME: remove soon)
+ clean : 
+ 	rm -rf  ${BINDIR} ${LIBDIR} ${libObjs} *.o
+@@ -62,5 +71,10 @@ ${LIBDIR}/sonLib.a : ${libObjs}
+ 	${RANLIB} sonLib.a 
+ 	mv sonLib.a ${LIBDIR}/
+ 
++${LIBDIR}/libsonLib.so : ${libObjs}
++	@mkdir -p $(dir $@)
++	${CC} ${CPPFLAGS} ${CFLAGS} ${LDFLAGS} -shared -fPIC ${libObjs} -lquicktree -lz -o libsonLib.so
++	mv libsonLib.so ${LIBDIR}/
++
+ test:
+ 	${PYTHON} allTests.py --testLength=SHORT --logLevel CRITICAL
+diff --git a/C/impl/stPhylogeny.c b/C/impl/stPhylogeny.c
+index fd0fcf4..33b594d 100644
+--- a/C/impl/stPhylogeny.c
++++ b/C/impl/stPhylogeny.c
+@@ -2,9 +2,9 @@
+ #include "sonLib.h"
+ #include "stPhylogeny.h"
+ // QuickTree includes
+-#include "cluster.h"
+-#include "tree.h"
+-#include "buildtree.h"
++#include "quicktree/cluster.h"
++#include "quicktree/tree.h"
++#include "quicktree/buildtree.h"
+ // Spimap C/C++ translation layer include
+ #include "stSpimapLayer.h"
+ 
+diff --git a/C/tests/cigarsTest.c b/C/tests/cigarsTest.c
+index 5189f69..a4547ba 100644
+--- a/C/tests/cigarsTest.c
++++ b/C/tests/cigarsTest.c
+@@ -9,11 +9,11 @@
+ #include <assert.h>
+ #include <string.h>
+ 
+-#include "fastCMaths.h"
+-#include "avl.h"
+-#include "commonC.h"
+-#include "bioioC.h"
+-#include "pairwiseAlignment.h"
++#include "sonLib/fastCMaths.h"
++#include "sonLib/avl.h"
++#include "sonLib/commonC.h"
++#include "sonLib/bioioC.h"
++#include "sonLib/pairwiseAlignment.h"
+ 
+ int main(int argc, char *argv[]) {
+     int64_t i;
+diff --git a/C/tests/fastaCTest.c b/C/tests/fastaCTest.c
+index 9cc81db..4d41ca4 100644
+--- a/C/tests/fastaCTest.c
++++ b/C/tests/fastaCTest.c
+@@ -9,9 +9,9 @@
+ #include <assert.h>
+ #include <string.h>
+ 
+-#include "fastCMaths.h"
+-#include "commonC.h"
+-#include "bioioC.h"
++#include "sonLib/fastCMaths.h"
++#include "sonLib/commonC.h"
++#include "sonLib/bioioC.h"
+ 
+ int main(int argc, char *argv[]) {
+     FILE *fileHandle;
+diff --git a/C/tests/kvDatabaseTestCommon.c b/C/tests/kvDatabaseTestCommon.c
+index eccf3c3..b5a9b21 100644
+--- a/C/tests/kvDatabaseTestCommon.c
++++ b/C/tests/kvDatabaseTestCommon.c
+@@ -9,7 +9,7 @@
+  */
+ #include "sonLibGlobalsTest.h"
+ #include "kvDatabaseTestCommon.h"
+-#include "stSafeC.h"
++#include "sonLib/stSafeC.h"
+ #include <getopt.h>
+ 
+ /* usage message and exit */
+diff --git a/C/tests/sonLibCommonTest.c b/C/tests/sonLibCommonTest.c
+index 1c208fc..6924ffa 100644
+--- a/C/tests/sonLibCommonTest.c
++++ b/C/tests/sonLibCommonTest.c
+@@ -11,7 +11,7 @@
+  *      Author: benedictpaten
+  */
+ #include "sonLibGlobalsTest.h"
+-#include "bioioC.h"
++#include "sonLib/bioioC.h"
+ 
+ static void test_st_logging(CuTest *testCase) {
+     /*
+diff --git a/C/tests/sonLibExceptTest.c b/C/tests/sonLibExceptTest.c
+index db00120..4d3f1cf 100644
+--- a/C/tests/sonLibExceptTest.c
++++ b/C/tests/sonLibExceptTest.c
+@@ -7,12 +7,12 @@
+ /*
+  * basic tests of stExcept.
+  */
+-#include "sonLibExcept.h"
++#include "sonLib/sonLibExcept.h"
+ #include "sonLibGlobalsTest.h"
+-#include "sonLibCommon.h"
++#include "sonLib/sonLibCommon.h"
+ #include <stdlib.h>
+ #include <stdio.h>
+-#include "stSafeC.h"
++#include "sonLib/stSafeC.h"
+ 
+ /* test throwing through two levels */
+ static const char *const ERR1 = "err1";
+diff --git a/C/tests/sonLibGlobalsTest.h b/C/tests/sonLibGlobalsTest.h
+index ddb1293..a704b99 100644
+--- a/C/tests/sonLibGlobalsTest.h
++++ b/C/tests/sonLibGlobalsTest.h
+@@ -28,6 +28,6 @@
+ #include <math.h>
+ 
+ #include "CuTest.h"
+-#include "sonLib.h"
++#include "sonLib/sonLib.h"
+ 
+ #endif // SONLIB_GLOBALS_TEST_H_
+diff --git a/C/tests/stPhylogenyTest.c b/C/tests/stPhylogenyTest.c
+index ea4c84b..93c3f1d 100644
+--- a/C/tests/stPhylogenyTest.c
++++ b/C/tests/stPhylogenyTest.c
+@@ -1,8 +1,8 @@
+ #include <stdlib.h>
+ #include <math.h>
+ #include "CuTest.h"
+-#include "sonLib.h"
+-#include "stPhylogeny.h"
++#include "sonLib/sonLib.h"
++#include "sonLib/stPhylogeny.h"
+ 
+ static stIndexedTreeInfo *getIndex(stTree *node) {
+     assert(node != NULL);
+diff --git a/C/tests/stThreadPoolTest.c b/C/tests/stThreadPoolTest.c
+index 8a456a6..a3f3128 100644
+--- a/C/tests/stThreadPoolTest.c
++++ b/C/tests/stThreadPoolTest.c
+@@ -1,5 +1,5 @@
+ #include "CuTest.h"
+-#include "sonLib.h"
++#include "sonLib/sonLib.h"
+ 
+ // Test sorting a few sublists into a larger list to try to catch out
+ // any race conditions.
+diff --git a/C/tests/stUnionFindTest.c b/C/tests/stUnionFindTest.c
+index c39826d..b7caf53 100644
+--- a/C/tests/stUnionFindTest.c
++++ b/C/tests/stUnionFindTest.c
+@@ -1,5 +1,5 @@
+ #include "CuTest.h"
+-#include "sonLib.h"
++#include "sonLib/sonLib.h"
+ 
+ // Simple static test.
+ static void stUnionFind_staticTest(CuTest *testCase) {
+diff --git a/Makefile b/Makefile
+index b244b55..e04e298 100644
+--- a/Makefile
++++ b/Makefile
+@@ -5,6 +5,9 @@ BINDIR = ./bin
+ 
+ all : cP ${BINDIR}/sonLib_daemonize.py
+ 
++shlib:
++	cd C && ${MAKE} shlib
++
+ clean : cP.clean externalToolsP.clean
+ 	rm -f ${BINDIR}/sonLib_daemonize.py
+ 
+@@ -23,6 +26,9 @@ externalToolsP.clean :
+ test : all
+ 	PYTHONPATH=src:. PATH=$$(pwd)/bin:$$PATH ${PYTHON} allTests.py --testLength=SHORT --logLevel=WARN
+ 
++tests-shlib:
++	cd C && ${MAKE} tests-shlib
++
+ ${BINDIR}/sonLib_daemonize.py : sonLib_daemonize.py cP
+ 	cp sonLib_daemonize.py ${BINDIR}/sonLib_daemonize.py
+ 	chmod +x ${BINDIR}/sonLib_daemonize.py
+diff --git a/setup.py b/setup.py
+index 9d96fd0..7db446e 100755
+--- a/setup.py
++++ b/setup.py
+@@ -12,7 +12,7 @@ class BuildWithMake(distutils.command.build_py.build_py):
+     """
+     def run(self):
+         # Call make.
+-        subprocess.check_call(["make"])
++        #subprocess.check_call(["make"])
+ 
+         # Keep building the Python stuff
+         distutils.command.build_py.build_py.run(self)
+-- 
+2.39.2
+
diff --git a/recipes/sonlib/patches/0002-Remove-need-for-CuTest-during-build.patch b/recipes/sonlib/patches/0002-Remove-need-for-CuTest-during-build.patch
new file mode 100644
index 0000000000000..bdb17a155cc5d
--- /dev/null
+++ b/recipes/sonlib/patches/0002-Remove-need-for-CuTest-during-build.patch
@@ -0,0 +1,24 @@
+From 9852a11e4c38f92725f72eefc041cfe5fadc2ea6 Mon Sep 17 00:00:00 2001
+From: Travis Wrightsman <tw493@cornell.edu>
+Date: Tue, 23 Jan 2024 22:18:44 -0500
+Subject: [PATCH] Remove need for CuTest during build
+
+---
+ C/impl/sonLibGlobalsInternal.h | 1 -
+ 1 file changed, 1 deletion(-)
+
+diff --git a/C/impl/sonLibGlobalsInternal.h b/C/impl/sonLibGlobalsInternal.h
+index f8542a0..9a2e51d 100644
+--- a/C/impl/sonLibGlobalsInternal.h
++++ b/C/impl/sonLibGlobalsInternal.h
+@@ -29,7 +29,6 @@
+ #include <math.h>
+ #include <inttypes.h>
+ 
+-#include "CuTest.h"
+ #include "sonLib.h"
+ #include "sonLibListPrivate.h"
+ 
+-- 
+2.39.2
+
diff --git a/recipes/sonlib/run_test.sh b/recipes/sonlib/run_test.sh
new file mode 100644
index 0000000000000..21a8a0e080ad4
--- /dev/null
+++ b/recipes/sonlib/run_test.sh
@@ -0,0 +1,7 @@
+#!/bin/bash
+
+set -eux
+
+make tests-shlib
+
+PATH="$PWD:$PATH" python allTests.py
diff --git a/recipes/sorted_nearest/build_failure.osx-64.yaml b/recipes/sorted_nearest/build_failure.osx-64.yaml
deleted file mode 100644
index 7c08d5d09c2e9..0000000000000
--- a/recipes/sorted_nearest/build_failure.osx-64.yaml
+++ /dev/null
@@ -1,104 +0,0 @@
-recipe_sha: aa8b08221fa8e68e1a02f7e6ff820b2afd94c1811832b9422de23482d8c27295  # The commit at which this recipe failed to build.
-skiplist: false # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
-log: |-
-  {} is not a Mach-O file
-  Can't parse the binary at the index #1
-  {} is not a Mach-O file
-  Can't parse the binary at the index #0
-  {} is not a Mach-O file
-  Can't parse the binary at the index #1
-  {} is not a Mach-O file
-  Can't parse the binary at the index #0
-  {} is not a Mach-O file
-  Can't parse the binary at the index #1
-  {} is not a Mach-O file
-  Can't parse the binary at the index #2
-  {} is not a Mach-O file
-  Can't parse the binary at the index #3
-  {} is not a Mach-O file
-  Can't parse the binary at the index #4
-  {} is not a Mach-O file
-  Can't parse the binary at the index #0
-  {} is not a Mach-O file
-  Can't parse the binary at the index #1
-  {} is not a Mach-O file
-  Can't parse the binary at the index #2
-  {} is not a Mach-O file
-  Can't parse the binary at the index #3
-  {} is not a Mach-O file
-  Can't parse the binary at the index #4
-  {} is not a Mach-O file
-  Can't parse the binary at the index #0
-  {} is not a Mach-O file
-  Can't parse the binary at the index #1
-     INFO: sysroot: '/System/Library/Frameworks/' files: '['vmnet.framework/Versions/A/_CodeSignature/CodeResources', 'vmnet.framework/Versions/A/Resources/version.plist', 'vmnet.framework/Versions/A/Resources/en.lproj/InfoPlist.strings', 'vmnet.framework/Versions/A/Resources/Info.plist']'
-     INFO: sysroot: '/usr/lib/' files: '['zsh/5.8.1/zsh/zselect.so', 'zsh/5.8.1/zsh/zpty.so', 'zsh/5.8.1/zsh/zprof.so', 'zsh/5.8.1/zsh/zleparameter.so']'
-     INFO: sysroot: '/opt/X11/' files: '[]'
-     INFO (sorted_nearest,lib/python3.8/site-packages/sorted_nearest/src/k_nearest.cpython-38-darwin.so): Needed DSO /System/Library/Frameworks/libSystem.B.dylib found in $SYSROOT
-     INFO (sorted_nearest,lib/python3.8/site-packages/sorted_nearest/src/merge_by.cpython-38-darwin.so): Needed DSO /System/Library/Frameworks/libSystem.B.dylib found in $SYSROOT
-     INFO (sorted_nearest,lib/python3.8/site-packages/sorted_nearest/src/cluster_by.cpython-38-darwin.so): Needed DSO /System/Library/Frameworks/libSystem.B.dylib found in $SYSROOT
-     INFO (sorted_nearest,lib/python3.8/site-packages/sorted_nearest/src/tiles.cpython-38-darwin.so): Needed DSO /System/Library/Frameworks/libSystem.B.dylib found in $SYSROOT
-     INFO (sorted_nearest,lib/python3.8/site-packages/sorted_nearest/src/introns.cpython-38-darwin.so): Needed DSO /System/Library/Frameworks/libSystem.B.dylib found in $SYSROOT
-     INFO (sorted_nearest,lib/python3.8/site-packages/sorted_nearest/src/k_nearest_ties.cpython-38-darwin.so): Needed DSO /System/Library/Frameworks/libSystem.B.dylib found in $SYSROOT
-     INFO (sorted_nearest,lib/python3.8/site-packages/sorted_nearest/src/windows.cpython-38-darwin.so): Needed DSO /System/Library/Frameworks/libSystem.B.dylib found in $SYSROOT
-     INFO (sorted_nearest,lib/python3.8/site-packages/sorted_nearest/src/max_disjoint_intervals.cpython-38-darwin.so): Needed DSO /System/Library/Frameworks/libSystem.B.dylib found in $SYSROOT
-     INFO (sorted_nearest,lib/python3.8/site-packages/sorted_nearest/src/clusters.cpython-38-darwin.so): Needed DSO /System/Library/Frameworks/libSystem.B.dylib found in $SYSROOT
-     INFO (sorted_nearest,lib/python3.8/site-packages/sorted_nearest/src/annotate_clusters.cpython-38-darwin.so): Needed DSO /System/Library/Frameworks/libSystem.B.dylib found in $SYSROOT
-     INFO (sorted_nearest,lib/python3.8/site-packages/sorted_nearest/src/sorted_nearest.cpython-38-darwin.so): Needed DSO /System/Library/Frameworks/libSystem.B.dylib found in $SYSROOT
-  WARNING (sorted_nearest): interpreter (Python) package conda-forge::python-3.8.17-hf9b03c3_0_cpython in requirements/run but it is not used (i.e. it is overdepending or perhaps statically linked? If that is what you want then add it to build/ignore_run_exports)
-  Fixing permissions
-  INFO :: Time taken to mark (prefix)
-          0 replacements in 0 files was 0.20 seconds
-  TEST START: /opt/mambaforge/envs/bioconda/conda-bld/osx-64/sorted_nearest-0.0.39-py38h604ca31_0.tar.bz2
-  Renaming work directory '/opt/mambaforge/envs/bioconda/conda-bld/sorted_nearest_1688764114444/work' to '/opt/mambaforge/envs/bioconda/conda-bld/sorted_nearest_1688764114444/work_moved_sorted_nearest-0.0.39-py38h604ca31_0_osx-64'
-  shutil.move(work)=/opt/mambaforge/envs/bioconda/conda-bld/sorted_nearest_1688764114444/work, dest=/opt/mambaforge/envs/bioconda/conda-bld/sorted_nearest_1688764114444/work_moved_sorted_nearest-0.0.39-py38h604ca31_0_osx-64)
-  INFO:conda_build.utils:Renaming work directory '/opt/mambaforge/envs/bioconda/conda-bld/sorted_nearest_1688764114444/work' to '/opt/mambaforge/envs/bioconda/conda-bld/sorted_nearest_1688764114444/work_moved_sorted_nearest-0.0.39-py38h604ca31_0_osx-64'
-  INFO:conda_build.utils:shutil.move(work)=/opt/mambaforge/envs/bioconda/conda-bld/sorted_nearest_1688764114444/work, dest=/opt/mambaforge/envs/bioconda/conda-bld/sorted_nearest_1688764114444/work_moved_sorted_nearest-0.0.39-py38h604ca31_0_osx-64)
-  Reloading output folder: /opt/mambaforge/envs/bioconda/conda-bld
-
-  ## Package Plan ##
-
-    environment location: /opt/mambaforge/envs/bioconda/conda-bld/sorted_nearest_1688764114444/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac
-
-
-  The following NEW packages will be INSTALLED:
-
-      bzip2:           1.0.8-h0d85af4_4          conda-forge
-      ca-certificates: 2023.5.7-h8857fd0_0       conda-forge
-      libblas:         3.9.0-17_osx64_openblas   conda-forge
-      libcblas:        3.9.0-17_osx64_openblas   conda-forge
-      libcxx:          16.0.6-hd57cbcb_0         conda-forge
-      libffi:          3.4.2-h0d85af4_5          conda-forge
-      libgfortran:     5.0.0-11_3_0_h97931a8_31  conda-forge
-      libgfortran5:    12.2.0-he409387_31        conda-forge
-      liblapack:       3.9.0-17_osx64_openblas   conda-forge
-      libopenblas:     0.3.23-openmp_h429af6e_0  conda-forge
-      libsqlite:       3.42.0-h58db7d2_0         conda-forge
-      libzlib:         1.2.13-h8a1eda9_5         conda-forge
-      llvm-openmp:     16.0.6-hff08bdf_0         conda-forge
-      ncurses:         6.4-hf0c8a7f_0            conda-forge
-      numpy:           1.24.4-py38h9a4a08f_0     conda-forge
-      openssl:         3.1.1-h8a1eda9_1          conda-forge
-      python:          3.8.17-hf9b03c3_0_cpython conda-forge
-      python_abi:      3.8-3_cp38                conda-forge
-      readline:        8.2-h9e318b2_1            conda-forge
-      sorted_nearest:  0.0.39-py38h604ca31_0     local
-      tk:              8.6.12-h5dbffcc_0         conda-forge
-      xz:              5.2.6-h775f41a_0          conda-forge
-
-  Preparing transaction: ...working... done
-  Verifying transaction: ...working... done
-  Executing transaction: ...working... done
-  export PREFIX=/opt/mambaforge/envs/bioconda/conda-bld/sorted_nearest_1688764114444/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac
-  export SRC_DIR=/opt/mambaforge/envs/bioconda/conda-bld/sorted_nearest_1688764114444/test_tmp
-  Traceback (most recent call last):
-    File "/opt/mambaforge/envs/bioconda/conda-bld/sorted_nearest_1688764114444/test_tmp/run_test.py", line 2, in <module>
-      import sorted_nearest
-    File "/opt/mambaforge/envs/bioconda/conda-bld/sorted_nearest_1688764114444/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/python3.8/site-packages/sorted_nearest/__init__.py", line 1, in <module>
-  import: 'sorted_nearest'
-      import pkg_resources
-  ModuleNotFoundError: No module named 'pkg_resources'
-  Tests failed for sorted_nearest-0.0.39-py38h604ca31_0.tar.bz2 - moving package to /opt/mambaforge/envs/bioconda/conda-bld/broken
-  WARNING:conda_build.build:Tests failed for sorted_nearest-0.0.39-py38h604ca31_0.tar.bz2 - moving package to /opt/mambaforge/envs/bioconda/conda-bld/broken
-  TESTS FAILED: sorted_nearest-0.0.39-py38h604ca31_0.tar.bz2
-# Last 100 lines of the build log.
diff --git a/recipes/sorted_nearest/meta.yaml b/recipes/sorted_nearest/meta.yaml
index 613fe31b6243f..8cd37892ae730 100644
--- a/recipes/sorted_nearest/meta.yaml
+++ b/recipes/sorted_nearest/meta.yaml
@@ -14,8 +14,10 @@ source:
   '{{ hash_type }}': '{{ hash_value }}'
 
 build:
-  number: 0
+  number: 1
   script: python setup.py install --single-version-externally-managed --record=record.txt
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin='x.x') }}
 
 requirements:
   build:
@@ -36,3 +38,7 @@ about:
   home: https://github.com/endrebak/sorted_nearest
   license: BSD
   summary: Find nearest interval.
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/sourmash/meta.yaml b/recipes/sourmash/meta.yaml
index e6d8a7becede5..7a632308a3484 100644
--- a/recipes/sourmash/meta.yaml
+++ b/recipes/sourmash/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "4.8.2" %}
+{% set version = "4.8.8" %}
 
 package:
   name: sourmash
@@ -6,11 +6,13 @@ package:
 
 source:
   url: https://pypi.io/packages/source/s/sourmash/sourmash-{{ version }}.tar.gz
-  sha256: e0df78032e53ed88977445933ba3481dd10c7d3bd26d019511a6a4e6d7518475
+  sha256: 667da4b014f003032bdffa43318bb5668edbbc55055fe109dab959a914d69842
 
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('sourmash', max_pin="x") }}
 
 requirements:
   run:
diff --git a/recipes/spacepharer/build.sh b/recipes/spacepharer/build.sh
index 0d987840efe4b..b06956020200b 100644
--- a/recipes/spacepharer/build.sh
+++ b/recipes/spacepharer/build.sh
@@ -1,8 +1,18 @@
-#!/bin/bash -e
+#!/bin/bash
+
+ARCH_BUILD=""
+case $(uname -m) in
+    x86_64) ARCH_BUILD="-DHAVE_SSE4_1=1" ;;
+    arm64|aarch64) ARCH_BUILD="-DHAVE_ARM8=1" ;;
+esac
+
+if [ -z "${ARCH_BUILD}" ]; then
+    echo "Invalid architecture"
+    exit 1
+fi
 
 mkdir build
 cd build
-cmake -DCMAKE_INSTALL_PREFIX="${PREFIX}" -DHAVE_TESTS=0 -DHAVE_MPI=0 -DHAVE_SSE4_1=1 -DVERSION_OVERRIDE="${PKG_VERSION}" ..
+cmake -DCMAKE_INSTALL_PREFIX="${PREFIX}" -DHAVE_TESTS=0 -DHAVE_MPI=0 ${ARCH_BUILD} -DVERSION_OVERRIDE="${PKG_VERSION}" ..
 make -j${CPU_COUNT} ${VERBOSE_CM}
 make install
-
diff --git a/recipes/spacepharer/meta.yaml b/recipes/spacepharer/meta.yaml
index b42834234a7ea..ed8c6096e102d 100644
--- a/recipes/spacepharer/meta.yaml
+++ b/recipes/spacepharer/meta.yaml
@@ -6,7 +6,9 @@ package:
   version: {{ version|replace("-", ".")  }}
 
 build:
-  number: 3
+  number: 4
+  run_exports:
+    - {{ pin_subpackage('spacepharer', max_pin="x") }}
 
 source:
   url: https://github.com/soedinglab/spacepharer/archive/{{ version }}.tar.gz
@@ -46,3 +48,5 @@ extra:
   identifiers:
     - doi:10.1093/bioinformatics/btab222
     - biotools:spacepharer
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/spades/0001-change-verbosity-remove-expr.patch b/recipes/spades/0001-change-verbosity-remove-expr.patch
new file mode 100644
index 0000000000000..5528c0a70e085
--- /dev/null
+++ b/recipes/spades/0001-change-verbosity-remove-expr.patch
@@ -0,0 +1,25 @@
+diff -Naur pre_patch/spades_compile.sh post_patch/spades_compile.sh
+--- pre_patch/spades_compile.sh	2024-05-26 14:36:40
++++ post_patch/spades_compile.sh	2024-05-27 13:00:03
+@@ -36,10 +36,10 @@
+ }
+ 
+ # return the argument first character
+-str_head() { echo "$(expr substr "$1" 1 1)"; }
++str_head() { echo "${1::1}"; }
+ 
+ # return the argument without the first character
+-str_tail() { echo "$(expr substr "$1" 2 $((${#1}-1)))"; }
++str_tail() { echo "${1:1}"; }
+ 
+ print_help() {
+   echo
+@@ -222,7 +222,7 @@
+ 
+ cd "$WORK_DIR"
+ cmake -G "Unix Makefiles" -DCMAKE_INSTALL_PREFIX="$PREFIX" $ADDITIONAL_FLAGS "$BASEDIR/src"
+-make -j $AMOUNT_OF_THREADS
++make -j $AMOUNT_OF_THREADS VERBOSE=1
+ make install
+ cd "$PREFIX"
+ 
diff --git a/recipes/spades/0001-change-verbosity.patch b/recipes/spades/0001-change-verbosity.patch
deleted file mode 100644
index aa39a7d54ac1f..0000000000000
--- a/recipes/spades/0001-change-verbosity.patch
+++ /dev/null
@@ -1,24 +0,0 @@
-From 39f24e863713d170427d0b53741fe8bf0e295c90 Mon Sep 17 00:00:00 2001
-From: Anders Goncalves da Silva <andersgs@gmail.com>
-Date: Wed, 3 Feb 2021 20:30:52 -0800
-Subject: Update verbosity
-
----
- spades_compile.sh | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
-diff --git a/spades_compile.sh b/spades_compile.sh
-index 8d82c75..095a173 100755
---- a/spades_compile.sh
-+++ b/spades_compile.sh
-@@ -222,7 +222,7 @@ fi
-
- cd "$WORK_DIR"
- cmake -G "Unix Makefiles" -DCMAKE_INSTALL_PREFIX="$PREFIX" $ADDITIONAL_FLAGS "$BASEDIR/src"
--make -j $AMOUNT_OF_THREADS
-+make -j $AMOUNT_OF_THREADS VERBOSE=1
- make install
- cd "$PREFIX"
-
---
-2.24.3 (Apple Git-128)
\ No newline at end of file
diff --git a/recipes/spades/conda_build_config.yaml b/recipes/spades/conda_build_config.yaml
deleted file mode 100644
index fb6257a8ecaa4..0000000000000
--- a/recipes/spades/conda_build_config.yaml
+++ /dev/null
@@ -1,4 +0,0 @@
-c_compiler_version:            # [unix]
-  - 9                          # [unix]
-cxx_compiler_version:          # [unix]
-  - 9                          # [unix]
\ No newline at end of file
diff --git a/recipes/spades/meta.yaml b/recipes/spades/meta.yaml
index 0f6d1417124bf..180dba88908a0 100644
--- a/recipes/spades/meta.yaml
+++ b/recipes/spades/meta.yaml
@@ -9,34 +9,34 @@ source:
   url: https://github.com/ablab/spades/releases/download/v{{version}}/SPAdes-{{version}}.tar.gz
   sha256: {{ sha256 }}
   patches:
-    - 0001-change-verbosity.patch
+    - 0001-change-verbosity-remove-expr.patch
 
 build:
-  number: 1
-  skip: True  # [osx]
+  number: 2
+  run_exports:
+    - {{ pin_subpackage('spades', max_pin="x") }}
 
 requirements:
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
-    - clangdev  # [osx]
     - llvm-openmp  # [osx]
     - openmp  # [linux]
     - cmake
     - make
     - pkg-config
-    - sysroot_linux-64=2.17 # [linux]
+    - sysroot_linux-64 =2.17 # [linux]
   host:
     - llvm-openmp  # [osx]
     - openmp  # [linux]
     - zlib
     - bzip2
-    - sysroot_linux-64=2.17 # [linux]
+    - sysroot_linux-64 =2.17 # [linux]
   run:
     - llvm-openmp  # [osx]
     - openmp  # [linux]
-    - python
-    - sysroot_linux-64=2.17 # [linux]
+    - python >3.9
+    - sysroot_linux-64 =2.17 # [linux]
 
 test:
   commands:
@@ -73,6 +73,7 @@ extra:
   recipe-maintainers:
     - druvus
     - notestaff
+    - chrisjackson-pellicle
   identifiers:
     - biotools:spades
     - usegalaxy-eu:spades
diff --git a/recipes/spagrn/meta.yaml b/recipes/spagrn/meta.yaml
index e2a810f486bc8..e8dff8d51ed68 100644
--- a/recipes/spagrn/meta.yaml
+++ b/recipes/spagrn/meta.yaml
@@ -1,18 +1,20 @@
 {% set name = "SpaGRN" %}
-{% set version = "1.0.4" %}
+{% set version = "1.0.7" %}
 
 package:
   name: "{{ name|lower }}"
   version: "{{ version }}"
 
 source:
-  url:  http://www.bgiocean.com/SpaGRN/spatialGRN.tar.gz
-  sha256: a92f59f3c4095eef33f3b615932e9cbaa182ff80296265a4cbe030ec321a3e7e
+  url:  https://www.bgiocean.com/SpaGRN/SpaGRN.tar.gz
+  sha256: ac60ca83b69c483eb7b717e82d8a2ab3add0237919e610ac8d9e8ec9a1aca67c
 
 build:
   noarch : python
   number: 0
   script: "{{ PYTHON }} -m pip install --no-deps --ignore-installed ."
+  run_exports:
+    - {{ pin_subpackage('spagrn', max_pin="x.x") }}
 
 requirements:
   host:
@@ -43,8 +45,8 @@ test:
       - spagrn
 
 about:
-  home: https://github.com/iprada/Circle-Map
-  license: GNU General Public License v3.0
+  home: https://github.com/BGI-Qingdao/SpaGRN
+  license: GPL-3.0-or-later
   license_family: GPL3
   summary: A comprehensive tool to infer TF-centered, spatial gene regulatory networks for the spatially resolved transcriptomics (SRT) data.
 
diff --git a/recipes/spaln/build.sh b/recipes/spaln/build.sh
index 516965f0874e8..d660fa42671ea 100644
--- a/recipes/spaln/build.sh
+++ b/recipes/spaln/build.sh
@@ -1,6 +1,24 @@
-(cd src && \
- ./configure --exec_prefix=${PREFIX}/bin --table_dir=${PREFIX}/share/spaln/table --alndbs_dir=${PREFIX}/share/spaln/alndbs --use_zlib=1 && \
- make AR="${AR:-ar} rc" LDFLAGS="-L${PREFIX}/lib" && make install)
+#!/bin/bash
 
-#(cd ${SRC_DIR}/perl && perl Makefile.PL && \
-# sed -i -s '1s^#!/usr/bin/perl^#!/usr/bin/env perl^' *.pl && make && make install && chmod u+w ${PREFIX}/bin/*.pl)
+mkdir -p "${PREFIX}/bin"
+
+export INCLUDES="-I${PREFIX}/include"
+export LIBPATH="-L${PREFIX}/lib"
+export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
+
+export CPPFLAGS="${CPPFLAGS} -I${PREFIX}/include"
+export CFLAGS="${CFLAGS} -O3 ${LDFLAGS}"
+
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' ${SRC_DIR}/perl/*.pl
+rm -rf ${SRC_DIR}/perl/*.bak
+cp -rf ${SRC_DIR}/perl/*.pl "${PREFIX}/bin"
+
+cd src
+
+./configure --exec_prefix="${PREFIX}/bin" --table_dir="${PREFIX}/share/spaln/table" \
+	--alndbs_dir="${PREFIX}/share/spaln/alndbs"
+
+make CFLAGS="${CFLAGS}" AR="${AR:-ar} rc" LDFLAGS="${LDFLAGS}" -j4
+make install
+
+make clearall
diff --git a/recipes/spaln/makefile.patch b/recipes/spaln/makefile.patch
index 81373c948e82f..05b4085926c03 100644
--- a/recipes/spaln/makefile.patch
+++ b/recipes/spaln/makefile.patch
@@ -1,23 +1,31 @@
+diff --git a/src/Makefile.in b/src/Makefile.in
+index ed5cb96..2d837d0 100644
 --- a/src/Makefile.in
 +++ b/src/Makefile.in
-@@ -1,14 +1,14 @@
+@@ -1,19 +1,19 @@
  #	Makefile.in for splan/sortgrcd
- #	Copyright(c) Osamu Gotoh <<o.gotoh@asit.go.jp>>
+ #	Copyright(c) Osamu Gotoh <<gotoh.osamu.67a@st.kyoto-u.ac.jp>>
+ 
 -exec_prefix = /usr/local/bin
 -table_dir = /usr/local/bin
 -alndbs_dir = /db/seqdb
 -CXX  = g++
--CFLAGS = -O3
 +exec_prefix = $(PREFIX)/bin
 +table_dir = $(PREFIX)/share/spaln/table
 +alndbs_dir = $(PREFIX)/share/spaln/alndbs
 +CXX  = $(CXX)
-+CFLAGS = -O3 -I$(PREFIX)/include
+ #CXX  = clang++
+-CFLAGS = -O3 -march=native
++CFLAGS += -O3
  RANLIB = ranlib
- #CXX = clang++
- #CFLAGS = -Wall
 -LD  = g++
 +LD  = $(CXX)
  AR = ar ru
  DEL = rm -f
  DEFLT = -DM_THREAD=1
+ 
+-CXX := $(CXX) $(CFLAGS) $(DEFLT)
++CXX := $(CXX) $(CFLAGS) $(CPPFLAGS) $(DEFLT)
+ 
+ .SUFFIXES: .o .cc .h .sh
+ 
diff --git a/recipes/spaln/meta.yaml b/recipes/spaln/meta.yaml
index 7a03122bd25b4..98884708d7d91 100644
--- a/recipes/spaln/meta.yaml
+++ b/recipes/spaln/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "spaln" %}
-{% set version = "2.4.13f" %}
-{% set sha256 = "024fdcf58e38373983092280a7e10ff9c7e246e7d2465c165e158512e686225e" %}
+{% set version = "3.0.4" %}
+{% set sha256 = "6001a901e2e1ea5dbf19f34ee18b61ebd9afaf3a3c5107f937dd13e9b63ea870" %}
 
 package:
   name: {{ name|lower }}
@@ -16,6 +16,8 @@ source:
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage('spaln', max_pin="x") }}
 
 requirements:
   build:
@@ -23,23 +25,24 @@ requirements:
     - make
   host:
     - perl
-    - zlib ==1.2.11
+    - zlib
   run:
     - perl
 
 test:
   commands:
-    - spaln -h 2>&1 |grep 'SPALN version' >/dev/null
-    - makblk.pl 2>&1 |grep makblk.pl >/dev/null
-    - sortgrcd -h 2>&1 |grep sortgrcd >/dev/null
-    - makmdm -h 2>&1 |grep makmdm >/dev/null
-    - makdbs -h 2>&1 |grep makdbs >/dev/null
-    - makeidx.pl -h 2>&1 |grep makeidx.pl >/dev/null
+    - spaln -h 2>&1 | grep "version {{ version }}" >/dev/null
+    - makblk.pl 2>&1 | grep makblk.pl >/dev/null
+    - sortgrcd -h 2>&1 | grep sortgrcd >/dev/null
+    - makmdm -h 2>&1 | grep makmdm >/dev/null
+    - makdbs -h 2>&1 | grep makdbs >/dev/null
+    - makeidx.pl -h 2>&1 | grep makeidx.pl >/dev/null
 
 about:
-  home: http://www.genome.ist.i.kyoto-u.ac.jp/~aln_user/spaln/
+  home: https://github.com/ogotoh/spaln
+  doc_url: "https://github.com/ogotoh/spaln/blob/master/README.md"
   dev_url: https://github.com/ogotoh/spaln
-  license: GPL-2.0
+  license: "GPL-2.0-or-later"
   license_family: GPL
   license_file: COPYING
   summary: 'Map and align a set of cDNA/EST or protein sequences onto a genome'
@@ -53,3 +56,5 @@ about:
 extra:
   identifiers:
     - doi:10.1093/nar/gks708
+    - doi:10.1093/bioinformatics/btl067
+    - usegalaxy-eu:spaln
diff --git a/recipes/spaln/patch-makefile_ldflags b/recipes/spaln/patch-makefile_ldflags
index 180f1726dc68e..4b35645b7c204 100644
--- a/recipes/spaln/patch-makefile_ldflags
+++ b/recipes/spaln/patch-makefile_ldflags
@@ -1,20 +1,31 @@
---- a/src/Makefile.in	2021-04-26 03:36:44.000000000 +0100
-+++ b/src/Makefile.in	2021-05-11 16:59:24.000000000 +0100
-@@ -82,13 +82,13 @@
+--- a/src/Makefile.in
++++ b/src/Makefile.in
+@@ -23,8 +23,9 @@ PROG_F = fitild compild decompild plotild
+ PROG = $(PROG_B) $(PROG_A) $(PROG_F)
+ 
+ STDH = stdtype.h
+-CLIB = clib.a -lpthread -lm -lz
++CLIB = clib.a
+ SLIB = sblib.a $(CLIB)
++LLIB = -lpthread -lm -lz
+ ULIB = ublib.a $(SLIB)
+ 
+ BINDIR = $(DESTDIR)$(exec_prefix)
+@@ -88,13 +89,13 @@ ls:
  	ls $(SRC) $(HDR)
  
- spaln:	spaln.o blksrc.o $(SLIB)
--	$(CXX) -o spaln spaln.o blksrc.o $(SLIB) $(LLIB)
-+	$(CXX) $(LDFLAGS) -o spaln spaln.o blksrc.o $(SLIB) $(LLIB)
+ spaln:	spaln.cc blksrc.o $(SLIB)
+-	$(CXX) -o $@ spaln.cc blksrc.o $(SLIB) $(ILIB)
++	$(CXX) $(LDFLAGS) -o $@ spaln.cc blksrc.o $(SLIB) $(LLIB)
  sortgrcd:	sortgrcd.cc $(SLIB)
--	$(CXX) -o sortgrcd sortgrcd.cc $(SLIB) $(LLIB)
-+	$(CXX) $(LDFLAGS) -o sortgrcd sortgrcd.cc $(SLIB) $(LLIB)
+-	$(CXX) -o $@ sortgrcd.cc $(SLIB) $(ILIB)
++	$(CXX) $(LDFLAGS) -o $@ sortgrcd.cc $(SLIB) $(LLIB)
  makdbs: makdbs.cc dbs.h seq.h bitpat.h $(SLIB)
--	$(CXX) -o makdbs makdbs.cc $(SLIB) $(LLIB)
-+	$(CXX) $(LDFLAGS) -o makdbs makdbs.cc $(SLIB) $(LLIB)
+-	$(CXX) -o $@ makdbs.cc $(SLIB) $(ILIB)
++	$(CXX) $(LDFLAGS) -o $@ makdbs.cc $(SLIB) $(LLIB)
  makmdm: makmdm.cc mdm.h $(CLIB)
--	$(CXX) -o makmdm makmdm.cc $(CLIB) $(LLIB)
-+	$(CXX) $(LDFLAGS) -o makmdm makmdm.cc $(CLIB) $(LLIB)
+-	$(CXX) -o $@ makmdm.cc $(CLIB) $(ILIB)
++	$(CXX) $(LDFLAGS) -o $@ makmdm.cc $(CLIB) $(LLIB)
  
- spaln.o: spaln.cc seq.h aln.h
- bitpat.o: bitpat.cc bitpat.h
+ dvn:	dvn.cc autocomp.h $(ULIB)
+ 	$(CXX) -o $@ dvn.cc $(ULIB) $(ILIB)
diff --git a/recipes/spclust/build.sh b/recipes/spclust/build.sh
new file mode 100644
index 0000000000000..6b7675a69157c
--- /dev/null
+++ b/recipes/spclust/build.sh
@@ -0,0 +1,5 @@
+#!/bin/bash
+export CXX=mpicxx
+./configure --prefix=$PREFIX
+make
+make install
diff --git a/recipes/spclust/meta.yaml b/recipes/spclust/meta.yaml
new file mode 100644
index 0000000000000..ce3da49e000ea
--- /dev/null
+++ b/recipes/spclust/meta.yaml
@@ -0,0 +1,39 @@
+package:
+  name: spclust
+  version: "28.5.19"
+
+build:
+  number: 0
+
+source:
+  url: https://github.com/johnymatar/SpCLUST/raw/f582e47f7e85e67dfa85415f6c975ad65eecd183/Linux/install.tar.xz
+  sha256: 8b4ea8c384097788b56f5be2431d0487cd1b2d9d818bc0ec0edf56e13851fd31
+
+requirements:
+  build:
+    - make
+    - autoconf
+    - automake
+    - {{ compiler('cxx') }}
+  host:
+    - openmpi
+    - openmpi-mpicxx
+    - zlib
+  run:
+    - openmpi
+    - openmpi-mpicxx
+    - zlib
+
+test:
+  commands:
+    - mpiexec --allow-run-as-root spclust -h
+    #- mpispclust -h
+
+about:
+  home: https://github.com/johnymatar/SpCLUST/
+  license: gpl-3.0-or-later
+  summary: Spectral clustering for biological sequences
+
+extra:
+  container:
+    extended-base: True
diff --git a/recipes/sphae/meta.yaml b/recipes/sphae/meta.yaml
new file mode 100644
index 0000000000000..4b21f042b2181
--- /dev/null
+++ b/recipes/sphae/meta.yaml
@@ -0,0 +1,54 @@
+{% set name = "sphae" %}
+{% set version = "1.3.4" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://github.com/linsalrob/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz"
+  sha256: 750124e9fd532dac160885c6c811535c1df47e6348f5ef36c5c102a9d3208112
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - sphae=sphae.__main__:main
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('sphae', max_pin="x") }}
+
+requirements:
+  host:
+    - python <=3.11
+    - pip
+  run:
+    - python <=3.11
+    - snakemake-minimal >=7.14.0
+    - pyyaml >=6.0
+    - click >=8.1.3
+    - jinja2 >=3.0.2
+    - metasnek >=0.0.4
+    - snaketool-utils >=0.0.4
+    - attrmap >=0.0.7
+    - biopython >=1.8.1
+    - pandas
+
+test:
+  commands:
+    - sphae --help
+
+about:
+  home: "https://github.com/linsalrob/sphae/"
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "Phage toolkit"
+  description: "Assembling and annotating pure culture phages from both Illumina and Nanopore sequencing technology"
+  doc_url: "https://github.com/linsalrob/sphae"
+  dev_url: "https://github.com/linsalrob/sphae"
+
+extra:
+  recipe-maintainers:
+    - npbhavya
+    - linsalrob
diff --git a/recipes/splitcode/build.sh b/recipes/splitcode/build.sh
new file mode 100644
index 0000000000000..ef216459a9484
--- /dev/null
+++ b/recipes/splitcode/build.sh
@@ -0,0 +1,8 @@
+#!/bin/bash
+
+mkdir -p "${PREFIX}/bin"
+mkdir -p build
+cd build || exit 1
+cmake -DCMAKE_INSTALL_PREFIX:PATH="$PREFIX" ..
+make
+make install
diff --git a/recipes/splitcode/meta.yaml b/recipes/splitcode/meta.yaml
new file mode 100644
index 0000000000000..467a12c66ddb5
--- /dev/null
+++ b/recipes/splitcode/meta.yaml
@@ -0,0 +1,45 @@
+{% set version = "0.30.0" %}
+
+package:
+  name: splitcode
+  version: {{ version }}
+
+source:
+  url: https://github.com/pachterlab/splitcode/archive/refs/tags/v0.30.0.tar.gz
+  sha256: 2795d81aea98751827e22e6ddc3bc2ce4f607d71acfa7945344cbfd00535048d
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('splitcode', max_pin="x.x") }}
+
+requirements:
+  build:
+    - make
+    - cmake
+    - {{ compiler('cxx') }}
+  host:
+    - zlib
+  run:
+    - zlib
+
+test:
+  commands:
+    - splitcode --version
+
+about:
+  home: "https://github.com/pachterlab/splitcode"
+  license: BSD-2-Clause
+  license_family: BSD
+  summary: Flexible parsing, interpretation, and editing of technical sequences
+  dev_url: https://github.com/pachterlab/splitcode
+  doc_url: "https://splitcode.readthedocs.io"
+
+extra:
+  identifiers:
+    - biotools:splitcode
+    - doi:10.1101/2023.03.20.533521
+  recipe-maintainers:
+    - Yenaled
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/spoa/meta.yaml b/recipes/spoa/meta.yaml
index a7bd1400c5198..a24aaf1dacb32 100644
--- a/recipes/spoa/meta.yaml
+++ b/recipes/spoa/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "spoa" %}
-{% set version = "4.0.8" %}
-{% set sha256 = "3fc7e837b1052bd470924e37e0ed9531e7c839cd14b400573171d3d46d3ed9cd" %}
+{% set version = "4.1.4" %}
+{% set sha256 = "ea696650460b17881595454c2546a05905f2724927dbbf4d71f4bb8a3f6a99cd" %}
 
 package:
   name: {{ name }}
@@ -12,6 +12,8 @@ source:
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   build:
diff --git a/recipes/squeakr/meta.yaml b/recipes/squeakr/meta.yaml
index ca25f7870ea8a..510355fb28e6a 100644
--- a/recipes/squeakr/meta.yaml
+++ b/recipes/squeakr/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.6" %}
+{% set version = "0.7" %}
 {% set name = "squeakr" %}
 
 package:
@@ -7,11 +7,13 @@ package:
 
 source:
   url: https://github.com/splatlab/{{ name|lower }}/archive/V{{ version }}.tar.gz
-  sha256: 6738efd60a32362d98be311b949012a57787d0ee77679ac1016809267b6f29b2
+  sha256: 61f0493e5d27a7d629a87841052d174491018bb81e1876879f402d3b6885a9ff
 
 build:
-  number: 5
-  skip: True #  [osx]
+  number: 0
+  skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage('squeakr', max_pin="x.x") }}
 
 requirements:
   build:
@@ -21,16 +23,12 @@ requirements:
   host:
     - bzip2
     - zlib
-    - boost
     - boost-cpp
     - openssl
     - pthread-stubs
   run:
-    - bzip2
-    - zlib
-    - boost
     - boost-cpp
-    - openssl
+    - openssl  
     - pthread-stubs
 
 test:
@@ -41,4 +39,5 @@ about:
   home: https://github.com/splatlab/squeakr
   license: BSD-3-Clause
   license_family: BSD
-  summary: An Exact and Approximate k-mer Counting System
+  summary: "An Exact and Approximate k-mer Counting System"
+  dev_url: https://github.com/splatlab/squeakr
diff --git a/recipes/squigualiser/meta.yaml b/recipes/squigualiser/meta.yaml
new file mode 100644
index 0000000000000..3228a906e28fe
--- /dev/null
+++ b/recipes/squigualiser/meta.yaml
@@ -0,0 +1,55 @@
+{% set name = "squigualiser" %}
+{% set version = "0.6.3" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/squigualiser-{{ version }}.tar.gz
+  sha256: 17f443056d8f24c6e5dbb865cb55583ed3fb9c9522ab380f1393e8aa6da12915
+
+build:
+  entry_points:
+    - squigualiser=src.__init__:main
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('squigualiser', max_pin='x.x') }}
+
+requirements:
+  host:
+    - python >=3.8
+    - numpy
+    - pip
+  run:
+    - python >=3.8
+    - bokeh ==3.1.1
+    - numpy
+    - pyslow5
+    - pyfaidx
+    - pyfastx
+    - pysam
+    - matplotlib-base ==3.7
+    - seaborn
+    - selenium
+
+test:
+  imports:
+    - src
+  commands:
+    - pip check
+    - squigualiser --help
+  requires:
+    - pip
+
+about:
+  home: https://github.com/hiruna72/squigualiser
+  summary: Visualise ONT raw signals
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - hiruna72
diff --git a/recipes/squigulator/meta.yaml b/recipes/squigulator/meta.yaml
index d268f694d6c60..e55f517d8a142 100644
--- a/recipes/squigulator/meta.yaml
+++ b/recipes/squigulator/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "squigulator" %}
-{% set version = "0.2.0" %}
+{% set version = "0.3.0" %}
 
 package:
   name: {{ name }}
@@ -7,10 +7,12 @@ package:
 
 source:
   url: https://github.com/hasindu2008/squigulator/releases/download/v{{ version }}/squigulator-v{{ version }}-release.tar.gz
-  sha256: 5f4ccac9cf42656789c6c2320c3b3699743cb3100caaba99ed2b638d59143f38
+  sha256: fca1427fe609c20125e679459c1f509b320acf8a44887fa265649607d8a47789
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('squigulator', max_pin="x") }}
 
 requirements:
   build:
@@ -31,6 +33,7 @@ test:
 about:
   home: https://github.com/hasindu2008/squigulator
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary: A tool for simulating nanopore raw signal data
   description: 'squigulator is a tool for simulating nanopore raw signal data.'
diff --git a/recipes/sra-human-scrubber/fix_scrub_path.patch b/recipes/sra-human-scrubber/fix_scrub_path.patch
index ad4e8b7fefdc9..08f0b2884a739 100644
--- a/recipes/sra-human-scrubber/fix_scrub_path.patch
+++ b/recipes/sra-human-scrubber/fix_scrub_path.patch
@@ -1,9 +1,9 @@
 diff --git a/scripts/scrub.sh b/scripts/scrub.sh
-index f6b310c..6848a94 100755
+index 3f4c2ae..0337ec0 100755
 --- a/scripts/scrub.sh
 +++ b/scripts/scrub.sh
-@@ -27,7 +27,8 @@ RUNTEST=false
- THREADS=
+@@ -32,7 +32,8 @@ THREADS=
+ INTERLEAVED=
  DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )"  >/dev/null 2>&1 && pwd  )"
  ROOT=$(dirname $DIR)
 -DB=$ROOT/data/human_filter.db
@@ -11,8 +11,8 @@ index f6b310c..6848a94 100755
 +DB=${SCRUBBER_SHARE}/data/human_filter.db
  
  #Get input
- while getopts ":i:o:d:p:hxrt" opts; do
-@@ -65,10 +66,10 @@ if [ "$INFILE" == "test" ];
+ while getopts ":i:o:d:p:u:hxrts" opts; do
+@@ -74,10 +75,10 @@ if [ "$INFILE" == "test" ];
  fi
  
  #TESTING create temp dir and set infile
@@ -25,24 +25,28 @@ index f6b310c..6848a94 100755
      INFILE=$TMP_DIR/scrubber_test.fastq
  fi
  
-@@ -85,17 +86,17 @@ if [ ! -e "${INFILE}" ];
+@@ -94,19 +95,19 @@ if [ ! -e "${INFILE}" ];
      INFILE="$TMP_F_DIR/temp.fastq"
  fi
  #Use infile or temp fastq and generate fasta
--"$ROOT/scripts/fastq_to_fasta.py" < "${INFILE}" > "$TMP_F_DIR/temp.fasta"
+-"$ROOT/scripts/fastq_to_fasta.py" ${INTERLEAVED} < "${INFILE}" > "$TMP_F_DIR/temp.fasta"
 +fastq_to_fasta.py < "${INFILE}" > "$TMP_F_DIR/temp.fasta"
  
  if [ "$OUTFILE" ] && [ "$OUTFILE" != "-" ];
    then
--    "${ROOT}"/bin/aligns_to -db "${DB}" $(if [[ "$THREADS" =~ ^[0-9]+$ ]]; then printf "%s" "-num_threads $THREADS"; fi) "$TMP_F_DIR/temp.fasta" | "$ROOT/scripts/cut_spots_fastq.py" "$INFILE" "$REPLACEN" "$SAVEIDSPOTS" > "$OUTFILE"
-+    aligns_to -db "${DB}" $(if [[ "$THREADS" =~ ^[0-9]+$ ]]; then printf "%s" "-num_threads $THREADS"; fi) "$TMP_F_DIR/temp.fasta" | cut_spots_fastq.py "$INFILE" "$REPLACEN" "$SAVEIDSPOTS" > "$OUTFILE"
+-    "${ROOT}"/bin/aligns_to -db "${DB}" $(if [[ "$THREADS" =~ ^[0-9]+$ ]]; then printf "%s" "-num_threads $THREADS"; fi) "$TMP_F_DIR/temp.fasta" \
+-     | "$ROOT/scripts/cut_spots_fastq.py" "$INFILE" "$REPLACEN" "$SAVEIDSPOTS" "$BADSPOTFILE"  ${INTERLEAVED} > "$OUTFILE"
++    aligns_to -db "${DB}" $(if [[ "$THREADS" =~ ^[0-9]+$ ]]; then printf "%s" "-num_threads $THREADS"; fi) "$TMP_F_DIR/temp.fasta" \
++     | cut_spots_fastq.py "$INFILE" "$REPLACEN" "$SAVEIDSPOTS" "$BADSPOTFILE"  ${INTERLEAVED} > "$OUTFILE"
      if [ "$SAVEIDSPOTS" ] && [ -e "$TMP_F_DIR/temp.fastq.removed_spots" ];
        then
          cp "$TMP_F_DIR/temp.fastq.removed_spots" "$OUTFILE.removed_spots"
      fi
      else
--      "${ROOT}"/bin/aligns_to -db "${DB}" $(if [[ "$THREADS" =~ ^[0-9]+$ ]]; then printf "%s" "-num_threads $THREADS"; fi) "$TMP_F_DIR/temp.fasta" | "$ROOT/scripts/cut_spots_fastq.py" "$INFILE" "$REPLACEN"
-+      aligns_to -db "${DB}" $(if [[ "$THREADS" =~ ^[0-9]+$ ]]; then printf "%s" "-num_threads $THREADS"; fi) "$TMP_F_DIR/temp.fasta" | cut_spots_fastq.py "$INFILE" "$REPLACEN"
+-      "${ROOT}"/bin/aligns_to -db "${DB}" $(if [[ "$THREADS" =~ ^[0-9]+$ ]]; then printf "%s" "-num_threads $THREADS"; fi) "$TMP_F_DIR/temp.fasta" \
+-      | "$ROOT/scripts/cut_spots_fastq.py" "$INFILE" "$REPLACEN" "$SAVEIDSPOTS" "$BADSPOTFILE" ${INTERLEAVED}
++      aligns_to -db "${DB}" $(if [[ "$THREADS" =~ ^[0-9]+$ ]]; then printf "%s" "-num_threads $THREADS"; fi) "$TMP_F_DIR/temp.fasta" \
++      | cut_spots_fastq.py "$INFILE" "$REPLACEN" "$SAVEIDSPOTS" "$BADSPOTFILE" ${INTERLEAVED}
  fi
  
  #Check if TESTING was successful
diff --git a/recipes/sra-human-scrubber/meta.yaml b/recipes/sra-human-scrubber/meta.yaml
index 958d4702351a9..db0f995aeec60 100644
--- a/recipes/sra-human-scrubber/meta.yaml
+++ b/recipes/sra-human-scrubber/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "sra-human-scrubber" %}
-{% set version = "2.1.0" %}
-{% set sha256 = "55a777274c4b091d9dc137ad3fcf9a448246cd90e3f9aa5d886dae8c0d71d513" %}
+{% set version = "2.2.1" %}
+{% set sha256 = "4bfbc414c01a603e18a9df71fa6de00557f9b965c312d3f8c989f52c9991f450" %}
 
 package:
   name: {{ name }}
diff --git a/recipes/sra-tools/build.sh b/recipes/sra-tools/build.sh
index 61adcee08e6b5..5b55bd0ccec80 100755
--- a/recipes/sra-tools/build.sh
+++ b/recipes/sra-tools/build.sh
@@ -1,17 +1,13 @@
 #!/bin/bash -e
 
-export INCLUDE_PATH="${PREFIX}/include"
-export LIBRARY_PATH="${PREFIX}/lib"
-export LDFLAGS="-L${PREFIX}/lib"
-export CXX_FOR_BUILD=${CXX}
-
-export CFLAGS="-DH5_USE_110_API -I${PREFIX}/include ${LDFLAGS}"
-export CXXFLAGS="-I${PREFIX}/include ${LDFLAGS}"
+export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
+export CFLAGS="${CFLAGS} -O3 -DH5_USE_110_API -D_FILE_OFFSET_BITS=64 ${LDFLAGS}"
+export CXXFLAGS="${CXXFLAGS} -O3 -I${PREFIX}/include"
 
 echo "compiling sra-tools"
 if [[ ${OSTYPE} == "darwin"* ]]; then
     export CFLAGS="${CFLAGS} -DTARGET_OS_OSX"
-    export CXXFLAGS="${CXXFLAGS} -DTARGET_OS_OSX -D_LIBCPP_DISABLE_AVAILABILITY"
+    export CXXFLAGS="${CXXFLAGS} -DTARGET_OS_OSX"
 fi
 
 mkdir -p obj/ngs/ngs-java/javadoc/ngs-doc  # prevent error on OSX
@@ -20,16 +16,24 @@ mkdir -p obj/ngs/ngs-java/javadoc/ngs-doc  # prevent error on OSX
 # Execute Make commands from a separate subdirectory. Else:
 # ERROR: In source builds are not allowed
 export SRA_BUILD_DIR=${SRC_DIR}/build_sratools
-mkdir ${SRA_BUILD_DIR}
-pushd ${SRA_BUILD_DIR}
-cmake ../sra-tools/ -DVDB_BINDIR=${BUILD_PREFIX}/lib64 \
-    -DVDB_LIBDIR=${BUILD_PREFIX}/lib64 \
-    -DVDB_INCDIR=${BUILD_PREFIX}/include \
-    -DCMAKE_INSTALL_PREFIX=${PREFIX} \
-    -DCMAKE_BUILD_TYPE=Release
-cmake --build . -j 4 -v
-cmake --install .
-popd
+mkdir -p ${SRA_BUILD_DIR}
+
+if [[ "$(uname)" == "Darwin" ]]; then
+    export VDB_INC="${SRC_DIR}/ncbi-vdb/interfaces"
+else
+    export VDB_INC="${PREFIX}/include"
+fi
+
+cmake -S sra-tools/ -B build_sratools/ \
+    -DVDB_BINDIR="${PREFIX}" \
+    -DVDB_LIBDIR="${PREFIX}/lib64" \
+    -DVDB_INCDIR="${VDB_INC}" \
+    -DCMAKE_INSTALL_PREFIX="${PREFIX}" \
+    -DCMAKE_BUILD_TYPE=Release \
+    -DCMAKE_CXX_COMPILER="${CXX}" \
+    -DCMAKE_CXX_FLAGS="${CXXFLAGS}"
+
+cmake --build build_sratools/ --target install -j ${CPU_COUNT} -v
 
 
 # Strip package version from binary names
@@ -42,5 +46,5 @@ for exe in \
     srapath-orig \
     sra-pileup-orig
 do
-    ln -s "${exe}.${PKG_VERSION}" "${exe}"
+    ln -sf "${exe}.${PKG_VERSION}" "${exe}"
 done
diff --git a/recipes/sra-tools/build_failure.linux-64.yaml b/recipes/sra-tools/build_failure.linux-64.yaml
deleted file mode 100644
index 7d780860f3697..0000000000000
--- a/recipes/sra-tools/build_failure.linux-64.yaml
+++ /dev/null
@@ -1,104 +0,0 @@
-recipe_sha: 74068ce82e029b1de83b1336a271611bb232a4f1c51434eb8bb0c9b87a402e99  # The commit at which this recipe failed to build.
-skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
-log: |-
-  /opt/conda/conda-bld/sra-tools_1685393115370/work/sra-tools/tools/external/sra-pileup/sam-dump.c: In function 'DumpCGSAM.part.0':
-  /opt/conda/conda-bld/sra-tools_1685393115370/work/sra-tools/tools/external/sra-pileup/sam-dump.c:2457:40: warning: 'last_cig_op' may be used uninitialized in this function [-Wmaybe-uninitialized]
-   2457 |                 ciglen = last_ciglen  sprintf(dstlast_ciglen,"%d%c",last_cig_oplen,last_cig_op); \
-        |                                        ^~~~~~~
-  /opt/conda/conda-bld/sra-tools_1685393115370/work/sra-tools/tools/external/sra-pileup/sam-dump.c:2445:14: note: 'last_cig_op' was declared here
-   2445 |     char     last_cig_op;
-        |              ^~~~~~~~~~~
-  [ 68%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump3.c.o
-  /opt/conda/conda-bld/sra-tools_1685393115370/work/sra-tools/tools/external/sra-pileup/sam-dump3.c: In function 'KMain':
-  /opt/conda/conda-bld/sra-tools_1685393115370/work/sra-tools/tools/external/sra-pileup/sam-dump3.c:510:10: warning: 'mode' may be used uninitialized in this function [-Wmaybe-uninitialized]
-    510 |     rc = init_out_redir( &redir, mode, opts->outputfile, opts->output_buffer_size ); /* from out_redir.c */
-        |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  /opt/conda/conda-bld/sra-tools_1685393115370/work/sra-tools/tools/external/sra-pileup/sam-dump3.c:502:25: note: 'mode' was declared here
-    502 |     enum out_redir_mode mode;
-        |                         ^~~~
-  [ 68%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/dyn_string.c.o
-  [ 69%] Linking C executable ../../../bin/sam-dump
-  [ 69%] Built target sam-dump
-  [ 70%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/helper.c.o
-  [ 70%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/arg_helper.c.o
-  [ 70%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/dflt_defline.c.o
-  [ 71%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tool_ctx.c.o
-  [ 71%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/inspector.c.o
-  [ 71%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sbuffer.c.o
-  [ 71%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/err_msg.c.o
-  [ 72%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_tools.c.o
-  [ 72%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/var_fmt.c.o
-  [ 72%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/flex_printer.c.o
-  [ 72%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_dir.c.o
-  [ 73%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/progress_thread.c.o
-  [ 73%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cleanup_task.c.o
-  [ 73%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/index.c.o
-  [ 74%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/lookup_writer.c.o
-  [ 74%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/lookup_reader.c.o
-  [ 74%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_file_list.c.o
-  [ 74%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_value.c.o
-  [ 75%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_printer.c.o
-  [ 75%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/merge_sorter.c.o
-  [ 75%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sorter.c.o
-  [ 76%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cmn_iter.c.o
-  [ 76%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o
-  [ 76%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/special_iter.c.o
-  [ 76%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fastq_iter.c.o
-  [ 77%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/db_join.c.o
-  [ 77%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tbl_join.c.o
-  [ 77%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_registry.c.o
-  [ 77%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/copy_machine.c.o
-  [ 78%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/concatenator.c.o
-  [ 78%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o
-  [ 78%] Linking C executable ../../../bin/fasterq-dump
-  [ 78%] Built target fasterq-dump
-  [ 79%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o
-  [ 79%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o
-  [ 79%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o
-  In file included from /opt/conda/conda-bld/sra-tools_1685393115370/work/sra-tools/tools/external/vdb-dump/vdb-dump-tools.c:41:
-  /opt/conda/conda-bld/sra-tools_1685393115370/work/sra-tools/tools/external/vdb-dump/vdb-dump-tools.c: In function 'vdt_dump_float_element':
-  /opt/conda/conda-bld/sra-tools_1685393115370/_build_env/include/cc/gcc/x86_64/bitstr.h:35:20: warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
-     35 | #define BSWAP( x ) bswap_32 ( x )
-        |                    ^~~~~~~~
-  /opt/conda/conda-bld/sra-tools_1685393115370/_build_env/include/cc/gcc/x86_64/bitstr.h:35:20: warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
-  /opt/conda/conda-bld/sra-tools_1685393115370/_build_env/include/cc/gcc/x86_64/bitstr.h:35:20: warning: '*((void *)&value4)' may be used uninitialized in this function [-Wmaybe-uninitialized]
-  [ 79%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o
-  [ 80%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o
-  [ 80%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o
-  [ 80%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o
-  [ 80%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o
-  [ 81%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb_info.c.o
-  [ 81%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump.c.o
-  [ 81%] Linking C executable ../../../bin/vdb-dump
-  [ 81%] Built target vdb-dump
-  [ 81%] Building C object tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/vdb-validate.c.o
-  /opt/conda/conda-bld/sra-tools_1685393115370/work/sra-tools/tools/external/vdb-validate/vdb-validate.c: In function 'kdbcc':
-  /opt/conda/conda-bld/sra-tools_1685393115370/work/sra-tools/tools/external/vdb-validate/vdb-validate.c:410:18: error: too many arguments to function 'KTableConsistencyCheck'
-    410 |             rc = KTableConsistencyCheck ( tbl, 0, level, report, & ctx, platform );
-        |                  ^~~~~~~~~~~~~~~~~~~~~~
-  In file included from /opt/conda/conda-bld/sra-tools_1685393115370/work/sra-tools/tools/external/vdb-validate/vdb-validate.c:41:
-  /opt/conda/conda-bld/sra-tools_1685393115370/_build_env/include/kdb/consistency-check.h:126:20: note: declared here
-    126 | KDB_EXTERN rc_t CC KTableConsistencyCheck ( struct KTable const *self,
-        |                    ^~~~~~~~~~~~~~~~~~~~~~
-  make[2]: *** [tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/build.make:76: tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/vdb-validate.c.o] Error 1
-  make[1]: *** [CMakeFiles/Makefile2:2495: tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/all] Error 2
-  make: *** [Makefile:166: all] Error 2
-  Traceback (most recent call last):
-    File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
-      sys.exit(main())
-    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
-      call_conda_build(action, config)
-    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
-      result = api.build(
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
-      return build_tree(
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
-      packages_from_this = build(metadata, stats,
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
-      utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
-      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
-      raise subprocess.CalledProcessError(proc.returncode, _args)
-  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/sra-tools_1685393115370/work/conda_build.sh']' returned non-zero exit status 2.
-# Last 100 lines of the build log.
diff --git a/recipes/sra-tools/conda_build_config.yaml b/recipes/sra-tools/conda_build_config.yaml
index 1271f9dfbd295..fc9d91e7aedb6 100644
--- a/recipes/sra-tools/conda_build_config.yaml
+++ b/recipes/sra-tools/conda_build_config.yaml
@@ -1,7 +1,7 @@
 # current version does not build with newer compilers
 cxx_compiler_version:
-  - 10  # [linux]
+  - 11  # [linux]
   - 14  # [osx]
 c_compiler_version:
-  - 10  # [linux]
+  - 11  # [linux]
   - 14  # [osx]
diff --git a/recipes/sra-tools/meta.yaml b/recipes/sra-tools/meta.yaml
index 48c0ef25e97d9..bd3db099f622f 100644
--- a/recipes/sra-tools/meta.yaml
+++ b/recipes/sra-tools/meta.yaml
@@ -1,19 +1,23 @@
 {% set name = "sra-tools" %}
-{% set version = "3.0.6" %}
-{% set sha256 = "9fecfd819ee9beaf8a1d3e4b76a5d49e747bc064525b40416e0730a168986348" %}
+{% set version = "3.1.0" %}
+{% set sha256 = "ce92ce887ee4a7581a7511cfb6b965ac6a5e38841bad9be66a3aee903ec48952" %}
 
 package:
   name: {{ name }}
   version: {{ version }}
 
 source:
-  url: https://github.com/ncbi/sra-tools/archive/refs/tags/{{version}}.tar.gz
+- url: https://github.com/ncbi/sra-tools/archive/refs/tags/{{version}}.tar.gz
   sha256: {{ sha256 }}
   folder: sra-tools
+- url: https://github.com/ncbi/ncbi-vdb/archive/refs/tags/{{version}}.tar.gz  # [osx]
+  sha256: eec5a64b8353a201bd4cf2c58cfcbb3622327397c3b11696ae59d827fcfcea9d  # [osx]
+  folder: ncbi-vdb  # [osx]
 
 build:
-  number: 0
-  skip: True # [osx]
+  number: 1
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   build:
@@ -22,11 +26,12 @@ requirements:
     - cmake
     - bison
     - flex
-    - ncbi-vdb >=3.0.5
+  host:
+    - ncbi-vdb >={{ version }}
   run:
     - ca-certificates
     - curl
-    - ncbi-vdb >=3.0.5
+    - ncbi-vdb >={{ version }}
     - ossuuid
     - perl
     - perl-xml-libxml
@@ -55,6 +60,8 @@ about:
   description:  |
     The SRA Toolkit and SDK from NCBI is a collection of tools and libraries
     for using data in the INSDC Sequence Read Archives.
+  dev_url: https://github.com/ncbi/sra-tools
+  doc_url: https://github.com/ncbi/sra-tools/wiki
 
 extra:
   notes: 'After installation, you should run the configuration tool: ./vdb-config
diff --git a/recipes/srahunter/meta.yaml b/recipes/srahunter/meta.yaml
new file mode 100644
index 0000000000000..2efaca256b3a9
--- /dev/null
+++ b/recipes/srahunter/meta.yaml
@@ -0,0 +1,46 @@
+{% set name = "srahunter" %}
+{% set version = "0.0.2" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url:    https://github.com/GitEnricoNeko/srahunter/archive/refs/tags/{{version}}.tar.gz
+  sha256: 635dbea61296fc84857b8290fb8858b5dbc26301031d8fce3a5de2e340c78740
+build:
+  entry_points:
+    - srahunter=scripts.cli:main
+  noarch: python
+  script: {{ PYTHON }} -m pip install . --no-build-isolation --no-deps -vvv
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('srahunter', max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.6
+    - pip
+  run:
+    - datavzrd
+    - entrez-direct
+    - python >=3.6
+    - pandas >=2.0.2
+    - psutil >=5.7
+    - pyfiglet
+    - requests >=2.31.0
+    - tqdm >=4.66.1
+    - sra-tools
+
+test:
+  commands:
+    - pip check
+    - srahunter --help
+  requires:
+    - pip
+
+about:
+  home: https://github.com/GitEnricoNeko/srahunter
+  license: MIT
+  license_file: LICENSE
+  summary: "srahunter is a tool for processing SRA accession numbers."
diff --git a/recipes/srnaminer/meta.yaml b/recipes/srnaminer/meta.yaml
index dd1073276e174..6aab8d70881e2 100644
--- a/recipes/srnaminer/meta.yaml
+++ b/recipes/srnaminer/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.0.7" %}
+{% set version = "1.1.2" %}
 
 package:
   name: srnaminer
@@ -6,11 +6,13 @@ package:
 
 source:
   url: "https://github.com/kli28/sRNAminer/releases/download/v{{ version }}/sRNAminer_v{{ version }}.tar.gz"
-  sha256: 0870eb2e1a28d4771a33df9f8f67941cb661f726440b331beaf53d7b584463ed 
+  sha256: ad01e31f155d4160b8d0db35909fb38737a62fdc1678775fc64ff6f6fd7e6c84 
  
 build:
   number: 0
   noarch: python
+  run_exports:
+    - {{ pin_subpackage("srnaminer", max_pin="x.x") }}
 
 requirements:
   build:
@@ -35,7 +37,7 @@ test:
 
 about:
   home: https://github.com/kli28/sRNAminer
-  license: GPL3
+  license: CC BY-NC-SA 4.0
   license_file: LICENSE
   summary: "sRNAminer: a Multifunctional Toolkit for Next Generation Sequencing Small RNA Data Mining"
   description: sRNAminer-A multifunctional toolkit for sRNA analysis.
diff --git a/recipes/sspace_basic/build.sh b/recipes/sspace_basic/build.sh
new file mode 100644
index 0000000000000..6ffcc7df062cd
--- /dev/null
+++ b/recipes/sspace_basic/build.sh
@@ -0,0 +1,7 @@
+#!/bin/bash
+
+mkdir -p $PREFIX/bin && cp -r bin/* $PREFIX/bin && cp SSPACE_Basic.pl $PREFIX/bin && cp -r tools/* $PREFIX/bin
+chmod +x $PREFIX/bin/*
+sed -i.bak 's|/usr/bin/perl|/usr/bin/env perl|' $PREFIX/bin/*.pl
+ln -s $PREFIX/bin/SSPACE_Basic.pl $PREFIX/bin/sspace_basic
+mkdir -p $PREFIX/bin/dotlib && cp -r dotlib/* $PREFIX/bin/dotlib
\ No newline at end of file
diff --git a/recipes/sspace_basic/meta.yaml b/recipes/sspace_basic/meta.yaml
new file mode 100644
index 0000000000000..396c3ade6b7f2
--- /dev/null
+++ b/recipes/sspace_basic/meta.yaml
@@ -0,0 +1,41 @@
+{% set name = "sspace_basic" %}
+{% set version = "2.1.1" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/nsoranzo/{{name}}/archive/v{{version}}.tar.gz
+  md5: 826684a3da48282a6fb7943e15239314
+
+build:
+  number: 0
+  noarch: generic
+  run_exports: 
+  - {{pin_subpackage("sspace_basic", max_pin="x")}}
+
+requirements:
+  run:
+    - python
+    - perl >=5.24
+    - bowtie >=1.1.2
+
+test:
+  commands:
+    - |
+      EXPECTED_ERROR_MSG="ERROR: Parameter -l is required. Please insert a library file"
+      OUTPUT=$(sspace_basic 2>&1) || true
+      echo "$OUTPUT" | grep -q "$EXPECTED_ERROR_MSG"
+
+about:
+  home: https://github.com/nsoranzo/sspace_basic
+  license: GPL-2.0-only
+  summary: Scaffolding Pre-Assemblies After Contig Extension (SSPACE)
+  dev_url: https://github.com/nsoranzo/sspace_basic
+  doc_url: https://github.com/nsoranzo/sspace_basic
+
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/stacks/limits.patch b/recipes/stacks/limits.patch
new file mode 100644
index 0000000000000..18b4ca0761ec6
--- /dev/null
+++ b/recipes/stacks/limits.patch
@@ -0,0 +1,12 @@
+diff -ruN stacks-2.65-org/src/models.h stacks-2.65/src/models.h
+--- stacks-2.65-org/src/models.h	2023-10-17 11:57:14.093372152 +0200
++++ stacks-2.65/src/models.h	2023-10-17 11:57:54.645444150 +0200
+@@ -21,6 +21,8 @@
+ #ifndef __MODELS_H__
+ #define __MODELS_H__
+ 
++#include <limits>
++
+ #include "constants.h"
+ #include "utils.h"
+ #include "DNASeq4.h"
diff --git a/recipes/stacks/meta.yaml b/recipes/stacks/meta.yaml
index 98b7f47ce85e9..d8c7d2a6d53c9 100644
--- a/recipes/stacks/meta.yaml
+++ b/recipes/stacks/meta.yaml
@@ -1,12 +1,14 @@
-{% set version="2.64" %}
-{% set hash="5ea34f6081d6977f205d3c3943aef5f5374375a1b440dc44fe39836e860c3839" %}
+{% set version="2.65" %}
+{% set hash="ffd6bd3d6295ab9c89cc451f385d37cd1d47a77019c3d305f31202a2b895e2ea" %}
 package:
   name: stacks
   version: {{ version }}
 
 build:
-  number: 1
+  number: 0
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage("stacks", max_pin="x") }}
 
 source:
   sha256: {{ hash }}
@@ -14,6 +16,7 @@ source:
   patches:
     - at.patch
     - kmer_exit.patch
+    - limits.patch
 
 requirements:
   build:
diff --git a/recipes/staden_io_lib/meta.yaml b/recipes/staden_io_lib/meta.yaml
index 281cfd3b3d0e7..ed1200fa9c0ff 100644
--- a/recipes/staden_io_lib/meta.yaml
+++ b/recipes/staden_io_lib/meta.yaml
@@ -11,7 +11,7 @@ source:
   sha256: {{ hash }}
 
 build:
-  number: 7
+  number: 8
   skip: True # [osx]
   run_exports:
     - {{ pin_subpackage('staden_io_lib', max_pin='x.x') }}
@@ -42,3 +42,7 @@ about:
   license: BSD
   license_file: COPYRIGHT
   summary: 'Staden io_lib is a library of file reading and writing code e.g. for SAM/BAM/CRAM'
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/star-fusion/meta.yaml b/recipes/star-fusion/meta.yaml
index 2730d3d2414c3..ec08b7320286e 100644
--- a/recipes/star-fusion/meta.yaml
+++ b/recipes/star-fusion/meta.yaml
@@ -1,40 +1,42 @@
 {% set name = "STAR-Fusion" %}
-{% set version = "1.12.0" %}
-{% set sha256 = "f99e008a69bdbd8e3cfe51a50f1a57860d4c9a30e2f4f2de80a9b32c97f50e41" %}
+{% set version = "1.13.0" %}
+{% set sha256 = "39087681abfea5d09e3bff54f91853588b11ec5a924481ab5dc7cfbbd0742e03" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://github.com/STAR-Fusion/STAR-Fusion/releases/download/STAR-Fusion-v{{ version }}/STAR-Fusion-v{{ version }}.FULL.tar.gz
+  url: https://github.com/STAR-Fusion/STAR-Fusion/releases/download/STAR-Fusion-v{{ version }}/STAR-Fusion.v0.13.0.FULL.tar.gz
   sha256: {{ sha256 }}
 
 build:
   number: 1
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('star-fusion', max_pin="x") }}
 
 requirements:
   run:
-      - bbmap
-      - blast
-      - bzip2
-      - gmap
-      - htslib
-      - igv-reports
-      - openssl
-      - perl
-      - perl-carp
-      - perl-carp-assert
-      - perl-db-file
-      - perl-io-gzip
-      - perl-json-xs
-      - perl-set-intervaltree
-      - perl-uri
-      - python
-      - samtools <1.10
-      - star ==2.7.8a
-      - trinity <2.9
+    - bbmap
+    - blast
+    - bzip2
+    - gmap
+    - htslib
+    - igv-reports
+    - openssl
+    - perl
+    - perl-carp
+    - perl-carp-assert
+    - perl-db-file
+    - perl-io-gzip
+    - perl-json-xs
+    - perl-set-intervaltree
+    - perl-uri
+    - python
+    - samtools <1.10
+    - star ==2.7.11a
+    - trinity <2.9
 
 test:
   commands:
@@ -48,3 +50,11 @@ about:
   license_file: LICENSE
   license_family: BSD
   summary: "STAR-Fusion fusion variant caller. All dependencies required to run FusionInspector and FusionAnnotator are included."
+  doc_url: https://github.com/STAR-Fusion/STAR-Fusion/wiki
+  dev_url: https://github.com/STAR-Fusion/STAR-Fusion
+
+extra:
+  identifiers:
+    - doi:10.1186/s13059-019-1842-9
+    - biotools:star-fusion
+    - usegalaxy-eu:star_fusion
diff --git a/recipes/star/build.sh b/recipes/star/build.sh
index fd1118c08c27b..c10bb36255423 100644
--- a/recipes/star/build.sh
+++ b/recipes/star/build.sh
@@ -23,7 +23,7 @@ else
         cp ../simd-dispatch.sh $PREFIX/bin/STAR
         cp ../simd-dispatch.sh $PREFIX/bin/STARlong
     else
-        make pj "$(nproc)" STAR STARlong
+        make -pj "$(nproc)" STAR STARlong
         cp STAR $PREFIX/bin/STAR
         cp STARlong $PREFIX/bin/STARlong
     fi
diff --git a/recipes/star/meta.yaml b/recipes/star/meta.yaml
index 0935e191882d3..d0504bcb00d36 100644
--- a/recipes/star/meta.yaml
+++ b/recipes/star/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "2.7.10b" %}
-{% set sha256 = "0d1b71de6c5be1c5d90b32130d2abcd5785a4fc7c1e9bf19cc391947f2dc46e5" %}
+{% set version = "2.7.11b" %}
+{% set sha256 = "3f65305e4112bd154c7e22b333dcdaafc681f4a895048fa30fa7ae56cac408e7" %}
 
 package:
   name: star
@@ -16,6 +16,8 @@ source:
 
 build:
   number: 1
+  run_exports:
+    - {{ pin_subpackage('star', max_pin="x") }}
 
 requirements:
   build:
@@ -25,8 +27,10 @@ requirements:
     - vim
   host:
     - htslib
+    - zlib
   run:
     - htslib
+    - zlib
 
 test:
   commands:
@@ -40,7 +44,11 @@ about:
   summary: An RNA-seq read aligner.
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:star
     - usegalaxy-eu:rna_starsolo
     - usegalaxy-eu:rna_star
+  recipe-maintainers:
+    - mjsteinbaugh
diff --git a/recipes/staramr/meta.yaml b/recipes/staramr/meta.yaml
index 1c09da4aec6ab..39a09ac479e9f 100644
--- a/recipes/staramr/meta.yaml
+++ b/recipes/staramr/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "staramr" %}
-{% set version = "0.9.1" %}
+{% set version = "0.10.0" %}
 
 package:
   name: '{{ name|lower }}'
@@ -7,12 +7,14 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 4ebfe7f9d48566b2c592ae1d6543e0f2bad62db433f7374a5581613e3e8b382a
+  sha256: 63e48a46663effa8ba093d424e0565eee2196bae8e9291ca8f0bc1b8b3b19632
 
 build:
   number: 0
   script: {{ PYTHON }} -m pip install --no-deps --ignore-installed .
   noarch: python
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/starcode/meta.yaml b/recipes/starcode/meta.yaml
index 7421d4d857ad0..2d1b57415ccf5 100644
--- a/recipes/starcode/meta.yaml
+++ b/recipes/starcode/meta.yaml
@@ -9,7 +9,9 @@ source:
   sha256: b4f0eae9498f2dcf9c8a7fa2fa88b141c6d5abcf6da44b03d5d85e5f1a8fd5b1
 
 build:
-  number: 4
+  number: 5
+  run_exports:
+    - {{ pin_subpackage('starcode', max_pin='x.x') }}
 
 requirements:
   build:
@@ -25,3 +27,7 @@ about:
   home: https://github.com/gui11aume/starcode
   license: GPLv3
   summary: 'Starcode: sequence clustering based on all-pairs search'
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/stecfinder/meta.yaml b/recipes/stecfinder/meta.yaml
index bc0c594097248..4309d12496f0b 100644
--- a/recipes/stecfinder/meta.yaml
+++ b/recipes/stecfinder/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.1.0" %}
+{% set version = "1.1.2" %}
 {% set name = "stecfinder" %}
 
 package:
@@ -7,12 +7,14 @@ package:
 
 source:
   url: https://github.com/LanLab/{{ name }}/archive/v{{ version }}.tar.gz
-  sha256: a22dfd6a68ae5146dc7a4c101727dbf039fab0673d4091cf92c46b4b6d4e8839
+  sha256: 56143eca071f750d9aad69451c3028ecffb7c4f701386b7cf923a193ef916965
 
 build:
   noarch: python
   number: 0
   script: {{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv
+  run_exports:
+    - {{ pin_subpackage('stecfinder', max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/straglr/meta.yaml b/recipes/straglr/meta.yaml
index ea5ed75c81eaf..572fb1c829da6 100644
--- a/recipes/straglr/meta.yaml
+++ b/recipes/straglr/meta.yaml
@@ -1,32 +1,36 @@
-{% set version = "1.4.1" %}
+{% set name = "straglr" %}
+{% set version = "1.5.0" %}
 
 package:
-  name: straglr
+  name: {{ name }}
   version: {{ version }}
 
 source:
-  url: https://github.com/bcgsc/straglr/archive/refs/tags/v1.4.1.tar.gz
-  sha256: 6c37a5f5cd91b81d766f0a524170fcf96fb288d184f796bfabb6bda335212f9e
+  url: https://github.com/bcgsc/straglr/archive/refs/tags/v1.5.0.tar.gz
+  sha256: 9daab4251a640959e3caa59e9ebfec1fbd0384c78730b4e71fd5a81d7fa23f58
 
 build:
   noarch: python
   number: 0
-  script: {{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
+  run_exports:
+    - {{ pin_subpackage('straglr', max_pin="x") }}
 
 requirements:
   host:
     - python >=3.7
     - pip
   run:
+    - python >=3.7
     - trf
     - blast
     - pysam >=0.14.0
-    - pybedtools >=0.7.9
+    - pybedtools >=0.9.0
     - intspan >=1.5.8
-    - numpy >=1.14.2
+    - numpy >=1.22.3
     - pathos >=0.2.3
-    - scikit-learn >=0.19.0
-    - scipy >=1.0.1
+    - scikit-learn >=1.1
+    - scipy >=1.8.0
 
 test:
   commands:
@@ -34,10 +38,12 @@ test:
 
 about:
   home: https://github.com/bcgsc/straglr
-  license: MIT License
+  license: GPL-3.0-or-later
   summary: 'Short-tandem repeat genotyping using long reads '
   license_family: GPL3
-  
+  license_file: LICENSE
+  dev_url: https://github.com/bcgsc/straglr
+
 extra:
   recipe-maintainers:
     - wdecoster
diff --git a/recipes/straindesign/meta.yaml b/recipes/straindesign/meta.yaml
index d7951054be15c..ead98afb52998 100644
--- a/recipes/straindesign/meta.yaml
+++ b/recipes/straindesign/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "straindesign" %}
-{% set version = "3.2.2" %}
+{% set version = "3.2.3" %}
 
 package:
   name: {{ name }}
@@ -7,23 +7,24 @@ package:
 
 source:
   url: https://github.com/brsynth/{{ name }}/archive/{{ version }}.tar.gz
-  sha256: 3574003d2034d2e417230990d751840ddef9c505e57ddcc60e243cc6980779e2
+  sha256: 326d55fb45321a89a2f32b9a8e966dbe1a15e070e504366c5e0fa050b67baca8
 
 build:
   number: 0
   noarch: python
   script: {{ PYTHON }} -m pip install -vv .
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   build:
     - pip
-    - python
+    - python >=3.8
     - pyyaml
     - setuptools
   run:
     - biopython
     - blessings
-    - click
     - cobra >=0.24
     - escher
     - future
@@ -32,14 +33,11 @@ requirements:
     - IProgress
     - lazy-object-proxy
     - plotly
-    - python
-    - markupsafe
+    - python >=3.8
     - networkx
     - numexpr
-    - numpy <1.24 # Related to https://github.com/numpy/numpy/pull/22607
     - openbabel
     - openpyxl
-    - optlang
     - ordered-set
     - palettable
     - pandas
@@ -63,3 +61,4 @@ about:
 extra:
   recipe-maintainers:
     - guillaume-gricourt
+    - tduigou
diff --git a/recipes/strainge/meta.yaml b/recipes/strainge/meta.yaml
index fa4a3096a8882..3857b0e6df44a 100644
--- a/recipes/strainge/meta.yaml
+++ b/recipes/strainge/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "strainge" %}
-{% set version = "1.3.7" %}
+{% set version = "1.3.8" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,16 +7,18 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: f73bbd9f5e1e4775ee070fc681eadeaba6bd6ab4300bda68144d9e669502c9b5
+  sha256: d93f1d5fea0f13519cdf19e6b0914c8ef5ce07778d653b74db267e92643e4bd1
 
 build:
-  number: 1
+  number: 0
   skip: true  # [py<38]
   entry_points:
     - strainge=strainge.cli.main:strainge_cli
     - straingst=strainge.cli.main:straingst_cli
     - straingr=strainge.cli.main:straingr_cli
   script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
+  run_exports:
+    - {{ pin_subpackage("strainge", max_pin="x") }}
 
 requirements:
   build:
@@ -34,10 +36,10 @@ requirements:
     - h5py
     - intervaltree
     - matplotlib-base
-    - scikit-bio >=0.5
+    - scikit-bio >=0.5.8
     - scikit-learn >=0.24
     - pysam >=0.10
-    - scipy <1.9
+    - scipy
 
 test:
   imports:
diff --git a/recipes/strainr2/build.sh b/recipes/strainr2/build.sh
new file mode 100644
index 0000000000000..7919ee79c22f1
--- /dev/null
+++ b/recipes/strainr2/build.sh
@@ -0,0 +1,17 @@
+#!/bin/bash -euo
+
+mkdir -p "${PREFIX}/bin"
+
+${CC} ${SRC_DIR}/subcontig.c -o subcontig
+
+chmod +x $SRC_DIR/PreProcessR
+chmod +x $SRC_DIR/subcontig
+chmod +x $SRC_DIR/hashcounter.py
+chmod +x $SRC_DIR/Plot.R
+chmod +x $SRC_DIR/StrainR
+
+cp $SRC_DIR/PreProcessR ${PREFIX}/bin/
+cp $SRC_DIR/subcontig ${PREFIX}/bin/
+cp $SRC_DIR/hashcounter.py ${PREFIX}/bin/
+cp $SRC_DIR/Plot.R ${PREFIX}/bin/
+cp $SRC_DIR/StrainR ${PREFIX}/bin/
diff --git a/recipes/strainr2/meta.yaml b/recipes/strainr2/meta.yaml
new file mode 100644
index 0000000000000..588aa7c636683
--- /dev/null
+++ b/recipes/strainr2/meta.yaml
@@ -0,0 +1,45 @@
+{% set version = "1.0.1" %}
+
+package:
+  name: strainr2
+  version: {{ version }}
+
+source:
+  url: https://github.com/BisanzLab/StrainR2/archive/v{{ version }}.tar.gz
+  sha256: 943121e54a386bf3cf6e8278b6d443d0d3d2b0edfaff795bcc25777ad3879abb
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("strainr2", max_pin="x") }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+  host:
+    - python
+    - r-base >=4.2.0
+  run:
+    - python
+    - bbmap
+    - fastp
+    - samtools
+    - sourmash >=4.0.0
+    - r-base >=4.2.0
+    - r-optparse
+    - r-tidyverse
+
+test:
+  commands:
+    - PreProcessR --help
+    - subcontig -h
+    - hashcounter.py --help
+    - StrainR --help
+    - Plot.R --help
+
+about:
+  home: https://github.com/BisanzLab/StrainR2
+  license: MIT
+  summary: 'strainr2: get high accuracy metagenomic strain abundance.'
+  license_family: MIT
+  license_file: LICENSE
diff --git a/recipes/strainscan/meta.yaml b/recipes/strainscan/meta.yaml
index fb4f84ca40204..a16796f4a5b47 100644
--- a/recipes/strainscan/meta.yaml
+++ b/recipes/strainscan/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "strainscan" %}
-{% set version = "1.0.10" %}
+{% set version = "1.0.14" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,15 +7,17 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 863133450b271c08c3c82ccc409e15b5bf690cf38c574049c10bffd76fc874eb
+  sha256: 2d927c5ac4d9b89a166afeca2aabaf4086d49b097e357ed0feb34181295cf243
 
 build:
-  number: 0
+  number: 1
   entry_points:
     - strainscan = StrainScan.StrainScan:main
     - strainscan_build = StrainScan.StrainScan_build:main
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('strainscan', max_pin="x") }}
 
 requirements:
   host:
@@ -23,7 +25,7 @@ requirements:
     - python ==3.7.3
   run:
     - python ==3.7.3
-    - sibeliaz ==1.2.2
+    - sibeliaz ==1.2.3
     - r-base ==4.0.2
     - numpy ==1.17.3
     - pandas ==1.0.1
diff --git a/recipes/stranger/meta.yaml b/recipes/stranger/meta.yaml
index 6cbbba18292d8..a303d4a75b34d 100644
--- a/recipes/stranger/meta.yaml
+++ b/recipes/stranger/meta.yaml
@@ -1,13 +1,13 @@
 {% set name = "stranger" %}
-{% set version = "0.8.1" %}
+{% set version = "0.9.0" %}
 
 package:
   name: "{{ name|lower }}"
   version: "{{ version }}"
 
 source:
-  url: "https://files.pythonhosted.org/packages/d6/57/4a82727f62efd6df1aa68d7b1584f30b8ee0822d47bbc7696f009eff11d6/{{ name }}-{{ version }}.tar.gz"
-  sha256: 907c906b525970221ccb9d448548801c8bfe9d1ed137c857cef3e7c9f7e70e4e
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: ecc1fc0b4f38c6415ee682ecbe4ecbd2df6db3b6807d11c82763d20e64109b93
 
 build:
   number: 0
@@ -15,6 +15,8 @@ build:
   entry_points:
     - stranger = stranger.__main__:base_command
   script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/strdust/build.sh b/recipes/strdust/build.sh
new file mode 100644
index 0000000000000..8c7b6970ffe7c
--- /dev/null
+++ b/recipes/strdust/build.sh
@@ -0,0 +1,6 @@
+#!/bin/bash -euo
+export CFLAGS="${CFLAGS} -fcommon"
+export CXXFLAGS="${CFLAGS} -fcommon"
+
+# build statically linked binary with Rust
+RUST_BACKTRACE=1 cargo install --verbose --root $PREFIX --path .
diff --git a/recipes/strdust/meta.yaml b/recipes/strdust/meta.yaml
new file mode 100644
index 0000000000000..281601c6ed233
--- /dev/null
+++ b/recipes/strdust/meta.yaml
@@ -0,0 +1,39 @@
+{% set name = "strdust" %}
+{% set version = "0.8.0" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('strdust', max_pin="x.x") }}
+
+source:
+  url: https://github.com/wdecoster/strdust/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 1b1e0ce34852961066f67020e44ed1716dfb1744488eb9b42b97f6516997cd38
+
+requirements:
+  build:
+    - {{ compiler('rust') }}  
+    - autoconf
+    - make
+    - {{ compiler('cxx') }}
+    - pkg-config
+    - cmake
+  host:
+    - zlib
+    - clang
+
+test:
+  commands:
+    - STRdust --help
+
+about:
+  home: "https://github.com/wdecoster/STRdust"
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "Tandem repeat genotyper for long reads."
+  dev_url: "https://github.com/wdecoster/STRdust"
diff --git a/recipes/stringtie/build.sh b/recipes/stringtie/build.sh
index 5e2d7207edd0d..36aa92faf7274 100644
--- a/recipes/stringtie/build.sh
+++ b/recipes/stringtie/build.sh
@@ -1,4 +1,6 @@
-#!/bin/sh
+#!/bin/bash
+
+ln -sf $PREFIX/lib/libz.so.1 $PREFIX/lib/libz.so
 
 export C_INCLUDE_PATH=$PREFIX/include
 export CPLUS_INCLUDE_PATH=$PREFIX/include
@@ -7,6 +9,7 @@ export CXXFLAGS="$CPPFLAGS"
 
 make release CXX=$CXX
 mkdir -p $PREFIX/bin
+chmod 755 stringtie
 mv stringtie $PREFIX/bin
 
 # Prepare prepDE
diff --git a/recipes/stringtie/build_failure.linux-64.yaml b/recipes/stringtie/build_failure.linux-64.yaml
deleted file mode 100644
index 13ad838251ba5..0000000000000
--- a/recipes/stringtie/build_failure.linux-64.yaml
+++ /dev/null
@@ -1,104 +0,0 @@
-recipe_sha: 3dbc68fc7b66d4c21c2045d31273d3244a913d7ed183dc762baa1f87cbd1c61b  # The commit at which this recipe failed to build.
-skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
-log: |-
-  rlink.cpp:11677:41: note: '*(void**)((char*)&trpattern  offsetof(GBitVec, GBitVec::fBits))' was declared here
-  11677 |                                 GBitVec trpattern(transfrag[t]->pattern);
-        |                                         ^~~~~~~~~
-  In function 'bool GMalloc(void**, long unsigned int)',
-      inlined from 'GBitVec::GBitVec(const GBitVec&)' at ./gclib/GBitVec.h:158:5,
-      inlined from 'GBitVec::GBitVec(const GBitVec&)' at ./gclib/GBitVec.h:150:3,
-      inlined from 'GBitVec traverse_dfs(int, int, CGraphnode*, CGraphnode*, GBitVec, int, GVec<bool>&, GPVec<CGraphnode>**, GPVec<CTransfrag>**, int&, GIntHash<int>**, int&)' at rlink.cpp:2484:53:
-  ./gclib/GBase.h:254:12: warning: '*(void**)((char*)&<unnamed>  offsetof(GBitVec, GBitVec::fBits))' may be used uninitialized [-Wmaybe-uninitialized]
-    254 |     return *ptr!=NULL;
-        |            ^~~~
-  rlink.cpp: In function 'GBitVec traverse_dfs(int, int, CGraphnode*, CGraphnode*, GBitVec, int, GVec<bool>&, GPVec<CGraphnode>**, GPVec<CTransfrag>**, int&, GIntHash<int>**, int&)':
-  rlink.cpp:2484:63: note: '<anonymous>' declared here
-   2484 |                 node->childpat = node->childpat | traverse_dfs(s,g,no2gnode[s][g][node->child[i]],sink,childparents,gno,visit,no2gnode,transfrag,edgeno,gpos,lastgpos);
-        |                                                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  In function 'void* memcpy(void*, const void*, size_t)',
-      inlined from 'GBitVec::GBitVec(const GBitVec&)' at ./gclib/GBitVec.h:159:11,
-      inlined from 'GBitVec::GBitVec(const GBitVec&)' at ./gclib/GBitVec.h:150:3,
-      inlined from 'GBitVec traverse_dfs(int, int, CGraphnode*, CGraphnode*, GBitVec, int, GVec<bool>&, GPVec<CGraphnode>**, GPVec<CTransfrag>**, int&, GIntHash<int>**, int&)' at rlink.cpp:2461:28:
-  /opt/conda/conda-bld/stringtie_1685392826475/_build_env/x86_64-conda-linux-gnu/sysroot/usr/include/bits/string3.h:52:33: warning: '*(void**)((char*)&childparents  offsetof(GBitVec, GBitVec::fBits))' may be used uninitialized [-Wmaybe-uninitialized]
-     52 |   return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest));
-        |          ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  rlink.cpp: In function 'GBitVec traverse_dfs(int, int, CGraphnode*, CGraphnode*, GBitVec, int, GVec<bool>&, GPVec<CGraphnode>**, GPVec<CTransfrag>**, int&, GIntHash<int>**, int&)':
-  rlink.cpp:2461:25: note: '*(void**)((char*)&childparents  offsetof(GBitVec, GBitVec::fBits))' was declared here
-   2461 |                 GBitVec childparents=parents;
-        |                         ^~~~~~~~~~~~
-  In function 'bool GMalloc(void**, long unsigned int)',
-      inlined from 'GBitVec::GBitVec(const GBitVec&)' at ./gclib/GBitVec.h:158:5,
-      inlined from 'GBitVec::GBitVec(const GBitVec&)' at ./gclib/GBitVec.h:150:3,
-      inlined from 'int create_graph(int, int, int, CBundle*, GPVec<CBundlenode>&, GList<CJunction>&, GList<CJunction>&, GVec<CGraphinfo>**, GPVec<CGraphnode>**, GPVec<CTransfrag>**, GIntHash<int>**, BundleData*, int&, int&, GArray<GEdge>&, int)' at rlink.cpp:3623:14:
-  ./gclib/GBase.h:254:12: warning: '*(void**)((char*)&<unnamed>  offsetof(GBitVec, GBitVec::fBits))' may be used uninitialized [-Wmaybe-uninitialized]
-    254 |     return *ptr!=NULL;
-        |            ^~~~
-  rlink.cpp: In function 'int create_graph(int, int, int, CBundle*, GPVec<CBundlenode>&, GList<CJunction>&, GList<CJunction>&, GVec<CGraphinfo>**, GPVec<CGraphnode>**, GPVec<CTransfrag>**, GIntHash<int>**, BundleData*, int&, int&, GArray<GEdge>&, int)':
-  rlink.cpp:3623:21: note: '<anonymous>' declared here
-   3623 |         traverse_dfs(s,g,source,sink,parents,graphno,visit,no2gnode,transfrag,edgeno,gpos,lastgpos);
-        |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  In function 'void* memcpy(void*, const void*, size_t)',
-      inlined from 'GBitVec::GBitVec(const GBitVec&)' at ./gclib/GBitVec.h:159:11,
-      inlined from 'GBitVec::GBitVec(const GBitVec&)' at ./gclib/GBitVec.h:150:3,
-      inlined from 'void get_fragment_pattern(GList<CReadAln>&, int, int, float, GVec<int>*, GVec<int>&, GVec<int>*, GVec<CGraphinfo>**, GVec<int>*, GVec<int>*, GIntHash<int>**, GPVec<CGraphnode>**, GPVec<CTransfrag>**, CTreePat***, GPVec<CGroup>&)' at rlink.cpp:4350:34:
-  /opt/conda/conda-bld/stringtie_1685392826475/_build_env/x86_64-conda-linux-gnu/sysroot/usr/include/bits/string3.h:52:33: warning: '*(void**)((char*)&conflictpattn  offsetof(GBitVec, GBitVec::fBits))' may be used uninitialized [-Wmaybe-uninitialized]
-     52 |   return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest));
-        |          ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  rlink.cpp: In function 'void get_fragment_pattern(GList<CReadAln>&, int, int, float, GVec<int>*, GVec<int>&, GVec<int>*, GVec<CGraphinfo>**, GVec<int>*, GVec<int>*, GIntHash<int>**, GPVec<CGraphnode>**, GPVec<CTransfrag>**, CTreePat***, GPVec<CGroup>&)':
-  rlink.cpp:4350:41: note: '*(void**)((char*)&conflictpattn  offsetof(GBitVec, GBitVec::fBits))' was declared here
-   4350 |                                 GBitVec conflictpattn=gnode->parentpat;
-        |                                         ^~~~~~~~~~~~~
-  $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -DNDEBUG -Wall -Wextra -I. -I./gclib -I$PREFIX/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c11 -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c tablemaker.cpp -o tablemaker.o
-  tablemaker.cpp: In function 'void rc_update_exons(RC_BundleData&)':
-  tablemaker.cpp:205:29: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<double>; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
-    205 |                      bind2nd( minus<double>(), avg));
-        |                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-  In file included from /opt/conda/conda-bld/stringtie_1685392826475/_build_env/x86_64-conda-linux-gnu/include/c/12.2.0/bits/stl_function.h:1438,
-                   from /opt/conda/conda-bld/stringtie_1685392826475/_build_env/x86_64-conda-linux-gnu/include/c/12.2.0/functional:49,
-                   from ./gclib/khashl.hh:25,
-                   from ./gclib/GHashMap.hh:8,
-                   from ./gclib/GFastaIndex.h:11,
-                   from ./gclib/GFaSeqGet.h:3,
-                   from ./gclib/gff.h:9,
-                   from rlink.h:5,
-                   from tablemaker.cpp:2:
-  /opt/conda/conda-bld/stringtie_1685392826475/_build_env/x86_64-conda-linux-gnu/include/c/12.2.0/backward/binders.h:172:5: note: declared here
-    172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
-        |     ^~~~~~~
-  tablemaker.cpp:212:29: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<double>; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
-    212 |                      bind2nd( minus<double>(), mavg));
-        |                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
-  /opt/conda/conda-bld/stringtie_1685392826475/_build_env/x86_64-conda-linux-gnu/include/c/12.2.0/backward/binders.h:172:5: note: declared here
-    172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
-        |     ^~~~~~~
-  $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -DNDEBUG -Wall -Wextra -I. -I./gclib -I$PREFIX/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c11 -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c tmerge.cpp -o tmerge.o
-  $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -DNDEBUG -Wall -Wextra -I. -I./gclib -I$PREFIX/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c11 -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c stringtie.cpp -o stringtie.o
-  stringtie.cpp: In function 'int main(int, char**)':
-  stringtie.cpp:468:18: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
-    468 |    if (tstackSize<defStackSize){
-        |        ~~~~~~~~~~^~~~~~~~~~~~~
-  $BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,$PREFIX/lib -Wl,-rpath-link,$PREFIX/lib -L$PREFIX/lib -o stringtie gclib/GBase.o gclib/GArgs.o gclib/GStr.o gclib/GSam.o gclib/gdna.o gclib/codons.o gclib/GFastaIndex.o gclib/GFaSeqGet.o gclib/gff.o gclib/GThreads.o rlink.o tablemaker.o tmerge.o stringtie.o -pthread -lhts -lz -lm
-
-    % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
-                                   Dload  Upload   Total   Spent    Left  Speed
-    0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
-  curl: (35) OpenSSL/3.1.0: error:0A000172:SSL routines::wrong signature type
-  Traceback (most recent call last):
-    File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
-      sys.exit(main())
-    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
-      call_conda_build(action, config)
-    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
-      result = api.build(
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
-      return build_tree(
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
-      packages_from_this = build(metadata, stats,
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
-      utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
-      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
-      raise subprocess.CalledProcessError(proc.returncode, _args)
-  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/stringtie_1685392826475/work/conda_build.sh']' returned non-zero exit status 35.
-# Last 100 lines of the build log.
diff --git a/recipes/stringtie/meta.yaml b/recipes/stringtie/meta.yaml
index a005ac59713ab..37148fc6c2804 100644
--- a/recipes/stringtie/meta.yaml
+++ b/recipes/stringtie/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "StringTie" %}
-{% set version = "2.2.1" %}
-{% set sha256 = "ce4eec532bbbe39af462be844afa6395ab38fa3418ef5fc2431e2d6194129527" %}
+{% set version = "2.2.3" %}
+{% set sha256 = "f372640b70a8fde763712d2f0565aff71f5facdc2300c8af829fea94a05ff208" %}
 
 package:
   name: {{ name|lower }}
@@ -13,16 +13,19 @@ source:
     - patch
 
 build:
-  number: 5
+  number: 0
   # TODO currently fails to build on osx.
   # Feel free to re-enable and debug.
-  skip: true  # [osx]
+  skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage("stringtie", max_pin="x") }}
 
 requirements:
   build:
     - make
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
+    - zlib
   host:
     # curl is used to download prepDE.py
     - htslib
@@ -36,16 +39,19 @@ test:
     - prepDE.py --help
 
 about:
-  home: https://ccb.jhu.edu/software/stringtie/
+  home: "https://ccb.jhu.edu/software/stringtie"
   license: MIT
   license_file: LICENSE
   license_family: MIT
-  summary: "StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts."
-  dev_url: https://github.com/gpertea/stringtie
+  summary: "StringTie employs efficient algorithms for transcript structure recovery and abundance estimation from bulk RNA-Seq reads aligned to a reference genome."
+  dev_url: "https://github.com/gpertea/stringtie"
+  doc_url: "https://ccb.jhu.edu/software/stringtie/index.shtml?t=manual"
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
-    - biotools:StringTie
+    - biotools:stringtie
     - usegalaxy-eu:stringtie
     - doi:10.1038/nbt.3122
     - doi:10.1038/nprot.2016.095
diff --git a/recipes/strobealign/meta.yaml b/recipes/strobealign/meta.yaml
index 1551cd502b0a0..f2b28b7497ef1 100644
--- a/recipes/strobealign/meta.yaml
+++ b/recipes/strobealign/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.11.0" %}
+{% set version = "0.13.0" %}
 
 package:
   name: strobealign
@@ -6,10 +6,12 @@ package:
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage("strobealign", max_pin="x.x") }}
 
 source:
   url: https://github.com/ksahlin/strobealign/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 9f2e5fc87ca377392006550bd2f0c76b54ee0d98d8f851310ebf9df59a23051d
+  sha256: 50f1585a8b3b733680067aa7ae20146a7d94d064d9fa234df0715bfcc5289c41
 
 requirements:
   build:
diff --git a/recipes/strucvis/meta.yaml b/recipes/strucvis/meta.yaml
index bf9f8595a4c78..78d2e1e957ec4 100644
--- a/recipes/strucvis/meta.yaml
+++ b/recipes/strucvis/meta.yaml
@@ -12,13 +12,16 @@ source:
 
 build:
   noarch: generic
-  number: 0
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('strucvis', max_pin="x.x") }}
 
 requirements:
   run:
     - perl
     - samtools >=1.10
     - viennarna 2.*
+    - ghostscript
 
 test:
   commands:
diff --git a/recipes/submission-excel2xml/build.sh b/recipes/submission-excel2xml/build.sh
new file mode 100644
index 0000000000000..a873d246167d1
--- /dev/null
+++ b/recipes/submission-excel2xml/build.sh
@@ -0,0 +1,40 @@
+#! /bin/bash
+
+APPROOT=$PREFIX/opt/$PKG_NAME
+
+mkdir -p $APPROOT
+
+bundle install && \
+    bundle exec rake install && \
+    bundle exec rake clobber
+
+
+sed -i '1s|^.*$|#! /usr/bin/env ruby|' $PREFIX/share/rubygems/bin/excel2xml_dra
+sed -i '1s|^.*$|#! /usr/bin/env ruby|' $PREFIX/share/rubygems/bin/excel2xml_jga
+sed -i '1s|^.*$|#! /usr/bin/env ruby|' $PREFIX/share/rubygems/bin/submission-excel2xml
+sed -i '1s|^.*$|#! /usr/bin/env ruby|' $PREFIX/share/rubygems/bin/validate_meta_dra
+sed -i '1s|^.*$|#! /usr/bin/env ruby|' $PREFIX/share/rubygems/bin/validate_meta_jga
+
+
+
+# Downloading xsd files
+# Files will be downloaded to $PREFIX/opt/submission-excel2xml/data
+# "submission-excel2xml/data" is hard-coded in the source code.
+export XDG_DATA_HOME=$PREFIX/opt
+submission-excel2xml download_xsd
+
+# copy sample files
+cp -r example/ $APPROOT/
+
+
+## Set variables on env activation
+mkdir -p ${PREFIX}/etc/conda/activate.d ${PREFIX}/etc/conda/deactivate.d
+cat <<EOF >> ${PREFIX}/etc/conda/activate.d/${PKG_NAME}.sh
+export XDG_DATA_HOME=$PREFIX/opt
+EOF
+
+cat <<EOF >> ${PREFIX}/etc/conda/deactivate.d/${PKG_NAME}.sh
+unset XDG_DATA_HOME
+EOF
+
+
diff --git a/recipes/submission-excel2xml/meta.yaml b/recipes/submission-excel2xml/meta.yaml
new file mode 100644
index 0000000000000..4efe00883652f
--- /dev/null
+++ b/recipes/submission-excel2xml/meta.yaml
@@ -0,0 +1,39 @@
+{% set version = "2.8.1" %}
+
+package:
+  name: submission-excel2xml
+  version: {{ version }}
+
+build:
+  number: 0
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage('submission-excel2xml', max_pin="x") }}
+
+source:
+  url: https://github.com/ddbj/submission-excel2xml/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: ac5e2157430a5f62fbc482bfe871b3638ce0ce023ce83c2fb4ea9515c60ddb13 
+
+requirements:
+  host:
+    - make
+    - ruby >=3.0
+    - compilers
+  run:
+    - ruby >=3.0
+    - libxml2
+
+test:
+  commands:
+    # - excel2xml_dra -h
+    # - excel2xml_jga -h
+    - excel2xml_dra -a example -i 0001 -p PRJDB7252  ${XDG_DATA_HOME}/submission-excel2xml/example/example-0001_dra_metadata.xlsx && validate_meta_dra -a example -i 0001
+    - excel2xml_dra -a example -i 0002 -p PRJDB7252 -c "National Institute of Genetics" ${XDG_DATA_HOME}/submission-excel2xml/example/example-0002_dra_metadata.xlsx && validate_meta_dra -a example -i 0002
+    - excel2xml_jga -j JSUB999999 ${XDG_DATA_HOME}/submission-excel2xml/example/JSUB999999_jga_metadata.xlsx && validate_meta_jga -j JSUB999999
+
+about:
+  home: https://github.com/ddbj/submission-excel2xml
+  license: Apache License 2.0
+  summary: Generate DRA metadata XML files from Excel spreadsheet
+
+
diff --git a/recipes/subread/build.sh b/recipes/subread/build.sh
index ad6eead5f7a09..4907a7094b1e1 100644
--- a/recipes/subread/build.sh
+++ b/recipes/subread/build.sh
@@ -1,5 +1,7 @@
 #!/bin/bash
 
+set -ex
+
 mkdir -p "${PREFIX}/bin"
 mkdir -p "${PREFIX}/annotation"
 
@@ -9,11 +11,20 @@ if [ `uname` = "Darwin" ];
 then
   MAKEFILE=Makefile.MacOS
 fi
+
+if [ $(uname -m) == "aarch64" ]; then
+  sed -i.bak 's/-mtune=core2//' ${MAKEFILE}
+  sed -i.bak 's/-mtune=core2//' ./longread-one/Makefile
+fi
+
 export C_INCLUDE_PATH=${PREFIX}/include
 export LIBRARY_PATH=${PREFIX}/lib
-make -f $MAKEFILE CC_EXEC="$CC -L$PREFIX/lib -fcommon"
+make -f $MAKEFILE CC_EXEC="$CC -L$PREFIX/lib -fcommon" -j ${CPU_COUNT}
 cd ..
 cp bin/utilities/* $PREFIX/bin
 rm -r bin/utilities
 cp bin/* $PREFIX/bin
 cp annotation/* $PREFIX/annotation
+
+# add read permissions to LICENSE
+chmod a+r LICENSE
\ No newline at end of file
diff --git a/recipes/subread/meta.yaml b/recipes/subread/meta.yaml
index 1953381d9c207..4e50d12b6bfbe 100644
--- a/recipes/subread/meta.yaml
+++ b/recipes/subread/meta.yaml
@@ -9,9 +9,12 @@ package:
 source:
   url: https://downloads.sourceforge.net/project/{{ name }}/{{ name }}-{{ version }}/{{ name }}-{{ version }}-source.tar.gz
   sha256: {{ sha256 }}
+  patches:
+    - unsignedchar.patch
 
 build:
-  number: 0
+  number: 2
+  run_exports: '{{ pin_subpackage(name, max_pin="x") }}'
 
 requirements:
   build:
@@ -19,8 +22,6 @@ requirements:
     - {{ compiler('c') }}
   host:
     - zlib
-  run:
-    - zlib
 
 test:
   commands:
@@ -43,6 +44,8 @@ about:
     - LICENSE
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:subread
     - usegalaxy-eu:featurecounts
diff --git a/recipes/subread/unsignedchar.patch b/recipes/subread/unsignedchar.patch
new file mode 100644
index 0000000000000..cdab247944345
--- /dev/null
+++ b/recipes/subread/unsignedchar.patch
@@ -0,0 +1,36 @@
+diff -urNp a/src/fullscan.c b/src/fullscan.c
+--- a/src/fullscan.c	2023-05-07 08:53:37
++++ b/src/fullscan.c	2024-03-21 23:29:44
+@@ -157,7 +157,7 @@ int main (int argc , char ** argv)
+ {
+ 	char index_name [MAX_FILE_NAME_LENGTH];
+ 	char read_str [1208];
+-	char c;
++	int c;
+ 	int i;
+ 
+ 	index_name[0]=0;
+diff -urNp a/src/read-repair.c b/src/read-repair.c
+--- a/src/read-repair.c	2023-05-07 08:53:37
++++ b/src/read-repair.c	2024-03-21 23:32:42
+@@ -50,7 +50,7 @@ int main_read_repair(int argc, char ** argv)
+ {
+ 	double t0 = miltime();
+ 	int threads = 8, is_BAM = 1;
+-	char c;
++	int c;
+ 	char in_BAM_file[MAX_FILE_NAME_LENGTH+1];
+ 	char out_BAM_file[MAX_FILE_NAME_LENGTH+1];
+ 	char rand_prefix[40];
+diff -urNp a/src/removeDupReads.c b/src/removeDupReads.c
+--- a/src/removeDupReads.c	2023-05-07 08:53:37
++++ b/src/removeDupReads.c	2024-03-21 23:34:56
+@@ -326,7 +326,7 @@ int main_repeated_test(int argc,char ** argv)
+ int main_repeated_test(int argc,char ** argv)
+ #endif
+ {
+-	char c;
++	int c;
+ 	char input_SAM_file[MAX_FILE_NAME_LENGTH];
+ 	char output_SAM_file[MAX_FILE_NAME_LENGTH];
+ 	char temp_path[MAX_FILE_NAME_LENGTH];
diff --git a/recipes/superdsm/meta.yaml b/recipes/superdsm/meta.yaml
index 12aa1e1c73a4d..2cd31150b245f 100644
--- a/recipes/superdsm/meta.yaml
+++ b/recipes/superdsm/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "SuperDSM" %}
-{% set version = "0.1.3" %}
+{% set version = "0.2.0" %}
 {% set repo_url = "https://github.com/BMCV/SuperDSM" %}
 {% set docs_url = "https://superdsm.readthedocs.io" %}
 
@@ -9,12 +9,14 @@ package:
 
 source:
   url: "{{ repo_url }}/archive/refs/tags/v{{ version }}.zip"
-  sha256: f55abbd6818a66886ddfe3f7fd9c5dd93c63ed2b6e3179552106e560a000ad5f
+  sha256: 9e9365f8df6e925851dd2bf2adeb71cdb52a6d20c775b1da4c7d8e641a02f8d7
 
 build:
-  number: 1
+  number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install --no-deps --ignore-installed . -vv "
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/svclone/meta.yaml b/recipes/svclone/meta.yaml
index 5bc23af0a0958..10eae865aa043 100644
--- a/recipes/svclone/meta.yaml
+++ b/recipes/svclone/meta.yaml
@@ -1,19 +1,22 @@
-{% set version = "1.1.2" %}
+{% set name = "svclone" %}
+{% set version = "1.1.3" %}
 
 package:
-  name: svclone
+  name: {{ name }}
   version: {{ version }}
 
 source:
   url: https://github.com/mcmero/SVclone/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 806e7e31498a084a353a39f98d8d35712d96f182feb6d077d364a2a7100e123e
+  sha256: ca2a9b2817e25ae4e3e1ae6cf2de71e70772e5f4a8f58a649518b82079ff12d4
 
 build:
-  number: 1
+  number: 0
   noarch: python
   entry_points:
     - svclone = SVclone.cli:main
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage('svclone', max_pin="x") }}
 
 requirements:
   host:
@@ -45,7 +48,8 @@ about:
   description: |
     A computational method for inferring the cancer cell
     fraction of tumour structural variation from whole-genome
-    sequencing data. 
+    sequencing data.
+  dev_url: https://github.com/mcmero/SVclone 
 
 extra:
   identifiers:
diff --git a/recipes/svdb/meta.yaml b/recipes/svdb/meta.yaml
index f907ba522b9b7..18c20ac9579a0 100644
--- a/recipes/svdb/meta.yaml
+++ b/recipes/svdb/meta.yaml
@@ -13,7 +13,9 @@ build:
   entry_points:
     - svdb = svdb.__main__:main
   script: python -m pip install --no-deps --ignore-installed .
-  number: 1
+  number: 2
+  run_exports:
+    - {{ pin_subpackage('svdb', max_pin="x") }}
 
 requirements:
   build:
@@ -36,3 +38,7 @@ about:
   license: MIT
   license_family: MIT
   summary: structural variant database software
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/svjedi-graph/meta.yaml b/recipes/svjedi-graph/meta.yaml
index 1f53c0c85f13c..28a591a5f48b6 100644
--- a/recipes/svjedi-graph/meta.yaml
+++ b/recipes/svjedi-graph/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "1.2.0" %}
-{% set sha256 = "ec01f0fc9bc0814f1d42caf3af57f50ead8bc4b89aabd007f595c31a200a078c" %}
+{% set version = "1.2.1" %}
+{% set sha256 = "862b12aae1b4e12494263933d9d7cab859ac856220aec55fba01de43a2120e6e" %}
 
 package:
   name: svjedi-graph
@@ -8,6 +8,8 @@ package:
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('svjedi-graph', max_pin=None) }}
 
 source:
   url: https://github.com/SandraLouise/SVJedi-graph/archive/refs/tags/v{{ version }}.tar.gz
diff --git a/recipes/svync/build.sh b/recipes/svync/build.sh
new file mode 100644
index 0000000000000..888542f1bb2ed
--- /dev/null
+++ b/recipes/svync/build.sh
@@ -0,0 +1,4 @@
+#!/bin/bash
+chmod a+x svync*
+mkdir -p $PREFIX/bin
+cp svync* $PREFIX/bin/svync
\ No newline at end of file
diff --git a/recipes/svync/meta.yaml b/recipes/svync/meta.yaml
new file mode 100644
index 0000000000000..9430c018d9b6c
--- /dev/null
+++ b/recipes/svync/meta.yaml
@@ -0,0 +1,36 @@
+{% set version = '0.1.2' %}
+{% set name = 'svync' %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  - url: https://github.com/nvnieuwk/svync/releases/download/{{ version }}/svync-{{ version }}-darwin-amd64.tar.gz # [osx-amd64]
+    md5: 2f64a4d9b81124917766bd8a754ea470 # [osx]
+  - url: https://github.com/nvnieuwk/svync/releases/download/{{ version }}/svync-{{ version }}-linux-amd64.tar.gz # [linux]
+    md5: 298f930c1f30918bd41d07db5bbfd348 # [linux]
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  run:
+    - tabix
+
+test:
+  commands:
+    - "{{ name }} --help"
+    - bgzip -h
+
+extra:
+  skip-lints:
+    - should_be_noarch_generic  # uses per platform binaries
+    - should_not_be_noarch_source  # uses binaries
+
+about:
+  home: https://github.com/nvnieuwk/svync
+  license: MIT
+  summary: A tool to standardize VCF files from structural variant callers
diff --git a/recipes/swarm/meta.yaml b/recipes/swarm/meta.yaml
index 7c4a7d06defe4..a7f72703f9624 100644
--- a/recipes/swarm/meta.yaml
+++ b/recipes/swarm/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "swarm" %}
-{% set version = "3.1.3" %}
+{% set version = "3.1.5" %}
 
 package:
   name: {{ name|lower }}
@@ -7,7 +7,7 @@ package:
 
 source:
   url: https://github.com/torognes/swarm/archive/v{{ version }}.tar.gz
-  sha256: 54f56831092053a646e4fd94a19410a821a63e1908926139ec84904be9dcd620
+  sha256: 68ccd814adc06e5325b73e102d7c8a34ee1367d0bfca704d513e4f06bab860d0
 
 requirements:
   build:
@@ -18,7 +18,9 @@ requirements:
     - python-igraph
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('swarm', max_pin="x") }}
 
 test:
   commands:
@@ -28,6 +30,7 @@ test:
 about:
   home: https://github.com/torognes/swarm
   license: Affero GPL
+  license_file: LICENSE
   summary: A robust and fast clustering method for amplicon-based studies.
 
 extra:
diff --git a/recipes/sylph/build.sh b/recipes/sylph/build.sh
new file mode 100644
index 0000000000000..3662f6efb60db
--- /dev/null
+++ b/recipes/sylph/build.sh
@@ -0,0 +1,8 @@
+#!/bin/bash -euo
+
+# Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
+# We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
+export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="$(pwd)/.cargo"
+
+# build statically linked binary with Rust
+RUST_BACKTRACE=1 cargo install --verbose --path . --root $PREFIX
diff --git a/recipes/sylph/meta.yaml b/recipes/sylph/meta.yaml
new file mode 100644
index 0000000000000..06ecabc04a199
--- /dev/null
+++ b/recipes/sylph/meta.yaml
@@ -0,0 +1,36 @@
+{% set version = "0.6.1" %}
+
+package:
+  name: sylph
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('sylph', max_pin='x.x') }}
+
+source:
+  url: https://github.com/bluenote-1577/sylph/archive/v{{ version }}.tar.gz
+  sha256: 9f384ecf33d5eed57e518c1cc238ffb5ac68948dcf921731ba77ccbd02b57bdb
+
+requirements:
+  build:
+    - {{ compiler("cxx") }}
+    - rust >=1.61
+    - make
+    - cmake >=3.12
+
+test:
+  commands:
+    - sylph --help
+
+about:
+  home: https://github.com/bluenote-1577/sylph
+  license: MIT
+  summary: sylph quickly enables querying of genomes against even low-coverage shotgun metagenomes to find nearest neighbour ANI.  
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - bluenote-1577
+    
diff --git a/recipes/synapseclient/LICENSE b/recipes/synapseclient/LICENSE
new file mode 100644
index 0000000000000..f3a03f482419e
--- /dev/null
+++ b/recipes/synapseclient/LICENSE
@@ -0,0 +1,201 @@
+                                 Apache License
+                           Version 2.0, January 2004
+                        http://www.apache.org/licenses/
+
+   TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
+
+   1. Definitions.
+
+      "License" shall mean the terms and conditions for use, reproduction,
+      and distribution as defined by Sections 1 through 9 of this document.
+
+      "Licensor" shall mean the copyright owner or entity authorized by
+      the copyright owner that is granting the License.
+
+      "Legal Entity" shall mean the union of the acting entity and all
+      other entities that control, are controlled by, or are under common
+      control with that entity. For the purposes of this definition,
+      "control" means (i) the power, direct or indirect, to cause the
+      direction or management of such entity, whether by contract or
+      otherwise, or (ii) ownership of fifty percent (50%) or more of the
+      outstanding shares, or (iii) beneficial ownership of such entity.
+
+      "You" (or "Your") shall mean an individual or Legal Entity
+      exercising permissions granted by this License.
+
+      "Source" form shall mean the preferred form for making modifications,
+      including but not limited to software source code, documentation
+      source, and configuration files.
+
+      "Object" form shall mean any form resulting from mechanical
+      transformation or translation of a Source form, including but
+      not limited to compiled object code, generated documentation,
+      and conversions to other media types.
+
+      "Work" shall mean the work of authorship, whether in Source or
+      Object form, made available under the License, as indicated by a
+      copyright notice that is included in or attached to the work
+      (an example is provided in the Appendix below).
+
+      "Derivative Works" shall mean any work, whether in Source or Object
+      form, that is based on (or derived from) the Work and for which the
+      editorial revisions, annotations, elaborations, or other modifications
+      represent, as a whole, an original work of authorship. For the purposes
+      of this License, Derivative Works shall not include works that remain
+      separable from, or merely link (or bind by name) to the interfaces of,
+      the Work and Derivative Works thereof.
+
+      "Contribution" shall mean any work of authorship, including
+      the original version of the Work and any modifications or additions
+      to that Work or Derivative Works thereof, that is intentionally
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+      to the Licensor or its representatives, including but not limited to
+      communication on electronic mailing lists, source code control systems,
+      and issue tracking systems that are managed by, or on behalf of, the
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+      designated in writing by the copyright owner as "Not a Contribution."
+
+      "Contributor" shall mean Licensor and any individual or Legal Entity
+      on behalf of whom a Contribution has been received by Licensor and
+      subsequently incorporated within the Work.
+
+   2. Grant of Copyright License. Subject to the terms and conditions of
+      this License, each Contributor hereby grants to You a perpetual,
+      worldwide, non-exclusive, no-charge, royalty-free, irrevocable
+      copyright license to reproduce, prepare Derivative Works of,
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+      Work and such Derivative Works in Source or Object form.
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+   3. Grant of Patent License. Subject to the terms and conditions of
+      this License, each Contributor hereby grants to You a perpetual,
+      worldwide, non-exclusive, no-charge, royalty-free, irrevocable
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+
+   4. Redistribution. You may reproduce and distribute copies of the
+      Work or Derivative Works thereof in any medium, with or without
+      modifications, and in Source or Object form, provided that You
+      meet the following conditions:
+
+      (a) You must give any other recipients of the Work or
+          Derivative Works a copy of this License; and
+
+      (b) You must cause any modified files to carry prominent notices
+          stating that You changed the files; and
+
+      (c) You must retain, in the Source form of any Derivative Works
+          that You distribute, all copyright, patent, trademark, and
+          attribution notices from the Source form of the Work,
+          excluding those notices that do not pertain to any part of
+          the Derivative Works; and
+
+      (d) If the Work includes a "NOTICE" text file as part of its
+          distribution, then any Derivative Works that You distribute must
+          include a readable copy of the attribution notices contained
+          within such NOTICE file, excluding those notices that do not
+          pertain to any part of the Derivative Works, in at least one
+          of the following places: within a NOTICE text file distributed
+          as part of the Derivative Works; within the Source form or
+          documentation, if provided along with the Derivative Works; or,
+          within a display generated by the Derivative Works, if and
+          wherever such third-party notices normally appear. The contents
+          of the NOTICE file are for informational purposes only and
+          do not modify the License. You may add Your own attribution
+          notices within Derivative Works that You distribute, alongside
+          or as an addendum to the NOTICE text from the Work, provided
+          that such additional attribution notices cannot be construed
+          as modifying the License.
+
+      You may add Your own copyright statement to Your modifications and
+      may provide additional or different license terms and conditions
+      for use, reproduction, or distribution of Your modifications, or
+      for any such Derivative Works as a whole, provided Your use,
+      reproduction, and distribution of the Work otherwise complies with
+      the conditions stated in this License.
+
+   5. Submission of Contributions. Unless You explicitly state otherwise,
+      any Contribution intentionally submitted for inclusion in the Work
+      by You to the Licensor shall be under the terms and conditions of
+      this License, without any additional terms or conditions.
+      Notwithstanding the above, nothing herein shall supersede or modify
+      the terms of any separate license agreement you may have executed
+      with Licensor regarding such Contributions.
+
+   6. Trademarks. This License does not grant permission to use the trade
+      names, trademarks, service marks, or product names of the Licensor,
+      except as required for reasonable and customary use in describing the
+      origin of the Work and reproducing the content of the NOTICE file.
+
+   7. Disclaimer of Warranty. Unless required by applicable law or
+      agreed to in writing, Licensor provides the Work (and each
+      Contributor provides its Contributions) on an "AS IS" BASIS,
+      WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
+      implied, including, without limitation, any warranties or conditions
+      of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A
+      PARTICULAR PURPOSE. You are solely responsible for determining the
+      appropriateness of using or redistributing the Work and assume any
+      risks associated with Your exercise of permissions under this License.
+
+   8. Limitation of Liability. In no event and under no legal theory,
+      whether in tort (including negligence), contract, or otherwise,
+      unless required by applicable law (such as deliberate and grossly
+      negligent acts) or agreed to in writing, shall any Contributor be
+      liable to You for damages, including any direct, indirect, special,
+      incidental, or consequential damages of any character arising as a
+      result of this License or out of the use or inability to use the
+      Work (including but not limited to damages for loss of goodwill,
+      work stoppage, computer failure or malfunction, or any and all
+      other commercial damages or losses), even if such Contributor
+      has been advised of the possibility of such damages.
+
+   9. Accepting Warranty or Additional Liability. While redistributing
+      the Work or Derivative Works thereof, You may choose to offer,
+      and charge a fee for, acceptance of support, warranty, indemnity,
+      or other liability obligations and/or rights consistent with this
+      License. However, in accepting such obligations, You may act only
+      on Your own behalf and on Your sole responsibility, not on behalf
+      of any other Contributor, and only if You agree to indemnify,
+      defend, and hold each Contributor harmless for any liability
+      incurred by, or claims asserted against, such Contributor by reason
+      of your accepting any such warranty or additional liability.
+
+   END OF TERMS AND CONDITIONS
+
+   APPENDIX: How to apply the Apache License to your work.
+
+      To apply the Apache License to your work, attach the following
+      boilerplate notice, with the fields enclosed by brackets "{}"
+      replaced with your own identifying information. (Don't include
+      the brackets!)  The text should be enclosed in the appropriate
+      comment syntax for the file format. We also recommend that a
+      file or class name and description of purpose be included on the
+      same "printed page" as the copyright notice for easier
+      identification within third-party archives.
+
+   Copyright 2016 Sage Bionetworks
+
+   Licensed under the Apache License, Version 2.0 (the "License");
+   you may not use this file except in compliance with the License.
+   You may obtain a copy of the License at
+
+       http://www.apache.org/licenses/LICENSE-2.0
+
+   Unless required by applicable law or agreed to in writing, software
+   distributed under the License is distributed on an "AS IS" BASIS,
+   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+   See the License for the specific language governing permissions and
+   limitations under the License.
diff --git a/recipes/synapseclient/build.sh b/recipes/synapseclient/build.sh
deleted file mode 100644
index 3786386a73c83..0000000000000
--- a/recipes/synapseclient/build.sh
+++ /dev/null
@@ -1,3 +0,0 @@
-#!/bin/bash
-
-$PYTHON setup.py install --single-version-externally-managed --record=record.txt
diff --git a/recipes/synapseclient/meta.yaml b/recipes/synapseclient/meta.yaml
index 7880c67b7ef93..91cd8644638db 100644
--- a/recipes/synapseclient/meta.yaml
+++ b/recipes/synapseclient/meta.yaml
@@ -1,53 +1,57 @@
-{% set version="2.7.2" %}
+{% set name = "synapseclient" %}
+{% set version = "4.2.0" %}
 
 package:
-  name: synapseclient
+  name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://pypi.io/packages/source/s/synapseclient/synapseclient-{{ version }}.tar.gz
-  sha256: dc5a61f9f495109a0c89aa7d42b641b6ff278280d7961fb450dd5015704fe15b
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/synapseclient-{{ version }}.tar.gz
+  sha256: 89222661125de1795b1a096cf8c58b8115c19d6b0fa5846ed2a41cdb394ef773
 
 build:
   noarch: python
   entry_points:
     - synapse = synapseclient.__main__:main
   number: 0
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv
+  run_exports:
+    - {{ pin_subpackage('synapseclient', max_pin="x") }}
 
 requirements:
   host:
-    - python
-    - setuptools
-    - requests >=2.22.0
-    - six
-    - future
-    - backports.csv
-    - deprecated >=1.2.4
-    - keyring >=15.0.0
+    - python >=3.8
+    - pip
   run:
-    - python
+    - python >=3.8
     - requests >=2.22
-    - six
-    - future
-    - backports.csv
+    - urllib3 <2
     - deprecated >=1.2.4
-    - keyring >=15.0.0
-  run_constrained:
-    - pandas >=0.25.0
-    - pysftp >=0.2.8
-    - boto3 >=1.7.0
+    - opentelemetry-api
+    - opentelemetry-sdk
+    - opentelemetry-exporter-otlp-proto-http
+    - nest-asyncio
+    - asyncio-atexit
+    - httpx
+    - tqdm
+    - loky
+    - async-lru
+    - psutil
 
 test:
   imports:
     - synapseclient
   commands:
     - synapse --help
-  
+
 about:
-  home: https://github.com/Sage-Bionetworks/synapsePythonClient
+  home: https://www.synapse.org
   license: Apache-2.0
+  license_family: APACHE
   summary: Python client for Synapse
   description: |
     A client for Synapse, a collaborative compute space  that allows
     scientists to share and analyze data together.
   license_file: LICENSE
+  dev_url: https://github.com/Sage-Bionetworks/synapsePythonClient
+  doc_url: https://python-docs.synapse.org/
diff --git a/recipes/syngap/build.sh b/recipes/syngap/build.sh
new file mode 100644
index 0000000000000..cdfdffb832323
--- /dev/null
+++ b/recipes/syngap/build.sh
@@ -0,0 +1,12 @@
+mkdir -p $PREFIX/bin
+cp -rf $SRC_DIR/bin $PREFIX/bin
+cp -rf $SRC_DIR/scripts $PREFIX/bin
+cp $SRC_DIR/SynGAP.py $PREFIX/bin
+cp $SRC_DIR/initdb.py $PREFIX/bin
+cp $SRC_DIR/master.py $PREFIX/bin
+cp $SRC_DIR/dual.py $PREFIX/bin
+cp $SRC_DIR/triple.py $PREFIX/bin
+cp $SRC_DIR/custom.py $PREFIX/bin
+cp $SRC_DIR/genepair.py $PREFIX/bin
+cp $SRC_DIR/evi.py $PREFIX/bin
+cp $SRC_DIR/eviplot.py $PREFIX/bin
diff --git a/recipes/syngap/meta.yaml b/recipes/syngap/meta.yaml
new file mode 100644
index 0000000000000..c53f862549b9a
--- /dev/null
+++ b/recipes/syngap/meta.yaml
@@ -0,0 +1,101 @@
+{% set name = "syngap" %}
+{% set version = "1.1.1" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/yanyew/SynGAP/releases/download/v{{ version }}/{{ name }}_v{{ version }}.tar.gz
+  sha256: 4756cba6ede6cef4d7784a46bc2add4dd5eabf2136b39fc982592d031b55e064
+  
+build: 
+  number: 0
+  entry_points: 
+    - syngap = SynGAP:main
+  noarch: generic
+  run_exports:
+    - python
+    - biopython
+    - jcvi
+    - bedtools
+    - last
+    - emboss
+    - gffread
+    - seqkit
+    - diamond
+    - perl-bioperl
+    - kneed
+    - numpy
+    - pandas
+    - matplotlib-base
+
+requirements:
+  bulid: 
+    - python >=3.10
+  run: 
+    - python >=3.10
+    - biopython >=1.81
+    - jcvi >=1.3.6
+    - bedtools >=2.31.0
+    - last >=1454
+    - emboss >=6.6.0
+    - gffread >=0.12.7
+    - seqkit >=2.4.0
+    - diamond >=2.1.8
+    - perl-bioperl >=1.7.8
+    - kneed >=0.8.3
+    - numpy >=1.26.0
+    - pandas >=2.1.1
+    - matplotlib-base >=3.8.0
+    - scikit-image >=0.22.0
+    - pybedtools >=0.9.0
+    - deap >=1.4.1
+    - more-itertools
+    - crossmap
+    - graphviz
+    - webcolors
+    - ortools-python
+  pip:
+    - ftpretty
+
+test: 
+  source_files: 
+    - run_test.sh
+    - SynGAP.py
+    - initdb.py
+    - master.py
+    - dual.py
+    - triple.py
+    - custom.py
+    - genepair.py
+    - evi.py
+    - eviplot.py
+    - bin/*
+    - scripts/*
+  imports: 
+    - SynGAP
+    - initdb
+    - master
+    - dual
+    - triple
+    - custom
+    - genepair
+    - evi
+    - eviplot
+  commands: 
+    - syngap -h
+    - syngap initdb -h
+    - syngap master -h
+    - syngap dual -h
+    - syngap triple -h
+    - syngap custom -h
+    - syngap genepair -h
+    - syngap evi -h
+    - syngap eviplot -h
+
+about: 
+  home: https://github.com/yanyew/SynGAP
+  license: CC-BY-NC-SA-4.0
+  summary: "SynGAP: Synteny-based Genome Annotations Polisher"
+  dev_url: https://github.com/yanyew/SynGAP
diff --git a/recipes/syny/build.sh b/recipes/syny/build.sh
new file mode 100644
index 0000000000000..4e032267dddc0
--- /dev/null
+++ b/recipes/syny/build.sh
@@ -0,0 +1,17 @@
+#!/bin/sh
+
+BIN=${PREFIX}/bin
+mkdir -p $BIN
+cp -R * $BIN
+
+## Creating symlinks in ${PREFIX}/bin for scripts located in SYNY subdirectories
+for subdir in {'Alignments','Clusters','Examples','Plots','Utils'}; do
+    for script in $subdir/*.{py,pl,sh}; do
+        if [[ "$script" =~ '*' ]]; then 
+            continue
+        else
+            echo "${PREFIX}/bin/$script"
+            ln -s "${PREFIX}/bin/$script" ${PREFIX}/bin/
+        fi
+    done
+done
\ No newline at end of file
diff --git a/recipes/syny/meta.yaml b/recipes/syny/meta.yaml
new file mode 100644
index 0000000000000..f50406b80e68c
--- /dev/null
+++ b/recipes/syny/meta.yaml
@@ -0,0 +1,73 @@
+{% set name = "syny" %}
+{% set version = "1.1a" %}
+{% set sha256 = "c86145b6030944970c797bbb099ba2e0fbe629b9c023d0c9333cff7506a6e84d" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://github.com/PombertLab/SYNY/archive/refs/tags/{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  noarch: generic
+  number: 0
+  run_exports:
+  - {{ pin_subpackage('syny', max_pin='x') }}
+
+requirements:
+  host:
+    - perl >=5.32
+    - python
+  run:
+    - perl >=5.32
+    - python
+    - matplotlib-base
+    - pandas
+    - seaborn
+    - scipy
+    - libgd
+    - perl-perlio-gzip
+    - perl-getopt-argvfile
+    - perl-clone
+    - perl-config-general
+    - perl-font-ttf
+    - perl-list-moreutils
+    - perl-math-bezier
+    - perl-math-round 
+    - perl-math-vecstat
+    - perl-params-validate
+    - perl-readonly 
+    - perl-regexp-common
+    - perl-set-intspan
+    - perl-statistics-basic
+    - perl-SVG
+    - perl-gd
+    - perl-text-format
+    - perl-text-roman
+    - minimap2 >=2.28
+    - mashmap >=3.1.3
+    - diamond >=2.1.9
+    - circos
+
+test:
+  commands:
+    - run_syny.pl --version
+    - paf_to_barplot.py
+    - linear_maps.py
+    - get_homology.pl
+    - get_paf.pl
+    - circos -v
+    - minimap2 --version
+    - mashmap --version
+    - diamond --version
+
+about:
+  home: https://github.com/PombertLab/SYNY
+  license: MIT
+  summary: "Genome collinearity inferences"
+
+extra:
+  recipe-maintainers:
+    - Pombert-JF
diff --git a/recipes/syri/meta.yaml b/recipes/syri/meta.yaml
index 583b8c738ccee..b43126defcad5 100755
--- a/recipes/syri/meta.yaml
+++ b/recipes/syri/meta.yaml
@@ -1,39 +1,44 @@
-{% set version = "1.6.3" %}
-{% set sha256 = "e05b7511d9b18bc8e7b78b999e8fd61664e56645a475399d654b2dbdde871902" %}
+{% set version = "1.7.0" %}
+{% set sha256 = "915a55840e1283fa61db9507d34af479d1f8a985ed7ab56aa7ccc86716a84780" %}
 
 package:
   name: syri
   version: {{ version }}
 
 source:
-  url: https://github.com/schneebergerlab/syri/archive/v{{ version }}.tar.gz
+  url: https://github.com/schneebergerlab/syri/archive/refs/tags/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
 
 build:
-  number: 1
-  skip: True  # [py < 38 or py > 39]
-  script: "{{ PYTHON }} setup.py install --single-version-externally-managed --record=record.txt"
+  number: 0
+  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vvv"
+  run_exports:
+    - {{ pin_subpackage('syri', max_pin="x") }}
 
 requirements:
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
   host:
-    - python
+    - python >=3.8,<=3.10
     - setuptools
-    - numpy >=1.20 
+    - numpy >=1.21.2
+    # Please review cython pinning on future releases
+    # see: https://github.com/schneebergerlab/syri/pull/217
     - cython
+    - libxcrypt
   run:
-    - python
-    - numpy  >=1.20
-    - pandas
-    - scipy
-    - psutil
-    - python-igraph
-    - pysam
+    - python >=3.8,<=3.10
+    - numpy >=1.21.2
+    - pandas >=1.2.4
+    - scipy >=1.6.2
+    - psutil >=5.8
+    - python-igraph >=0.9.1
+    - pysam >=0.16.0.1
     - longestrunsubsequence
     - pulp
 
+
 test:
   commands:
     - syri --version
diff --git a/recipes/t-coffee/meta.yaml b/recipes/t-coffee/meta.yaml
index 3eb499f930acc..b5cc7ac1818c2 100644
--- a/recipes/t-coffee/meta.yaml
+++ b/recipes/t-coffee/meta.yaml
@@ -1,17 +1,19 @@
-{% set version = "13.45.0.4846264" %}
+{% set version = "13.46.0.919e8c6b" %}
 
 package:
   name: t-coffee
   version: {{ version }}
 
 build:
-  number: 7
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('t-coffee', max_pin="x") }}
 
 source:
   # The latest stable release is at http://www.tcoffee.org/Packages/Stable/Latest/ ,
   # but is then archived at http://www.tcoffee.org/Packages/Archives/
   url: https://s3.eu-central-1.amazonaws.com/tcoffee-packages/Archives/T-COFFEE_distribution_Version_{{ version }}.tar.gz
-  sha256: c8e5ba17de11ddf07cf2ed37f077d81c1432d55b77761f115f9374de6f8d0d03
+  sha256: 31fd0ca0734974c93cb68bef6e394f463a4589c3315fd28cf2bd41b8a167db22
   patches:
     - expose-os-detection.patch
 
diff --git a/recipes/t1dgrs2/meta.yaml b/recipes/t1dgrs2/meta.yaml
index 5cdd7c34374ed..b6a3554ebe3e0 100644
--- a/recipes/t1dgrs2/meta.yaml
+++ b/recipes/t1dgrs2/meta.yaml
@@ -1,6 +1,6 @@
 {% set org = "t2diabetesgenes" %}
 {% set pkg_name = "t1dgrs2" %}
-{% set version = "0.1.0" %}
+{% set version = "0.1.2" %}
 {% set build_num = 0 %}
 
 package:
@@ -9,12 +9,14 @@ package:
 
 source:
   url: "https://github.com/{{ org }}/{{ pkg_name }}/archive/refs/tags/{{ version }}.tar.gz"
-  sha256: d005e5c6376ee1b8ea3a73f64a1ab4719934ddc7343994019ce42fae10988c11
+  sha256: 1e9b91d92ec8e14726da308a1c9f73522d25ce7d0097de9bd0180fb4391b6c48
 
 build:
   number: "{{ build_num }}"
   script: "{{ PYTHON }} -m pip install --no-deps --ignore-installed -vv ."
   noarch: python
+  run_exports:
+    - "{{ pin_subpackage('t1dgrs2', max_pin='x') }}"
 
 requirements:
   host:
@@ -44,4 +46,17 @@ about:
   license: GPLv3
   license_family: GPL
   license_file: LICENSE
-  summary: Generate a Type 1 Diabetes Genetic Risk Score that accounts for interactions between HLA-DQ variants.
+  summary: Generate a Type 1 Diabetes Genetic Risk Score (T1D GRS) that accounts for interactions between HLA DR-DQ risk haplotypes.
+  description: "An improved T1D GRS (by Sharp et al., 2019) that incorporates both non-HLA and HLA risk components in discriminating between cases and controls, by accounting for interactions between HLA DR-DQ haplotype combinations. This uses 67 T1D-associated variants in either GRCh37 or GRCh38 to perform both a linear scoring of the genetic risk, with the added HLA DR-DQ interaction effect for the final GRS.\n\nThis Python package can be used on both imputed genotyping array and next generation sequencing (e.g., whole genome sequencing) input datasets, but will require quality control procedures to be applied beforehand.\n\nRequired: PLINK 1.9 fileset (.bed, .bim, .fam).\n\nPlease download all configuration files under the 'data' directory from the [Github page](https://github.com/t2diabetesgenes/t1dgrs2) and adjust paths in 't1dgrs2_setttings.yml' accordingly.\n\
+    \n### Authors\n\
+    * Diane P Fraser ([email](mailto:d.p.fraser@exeter.ac.uk))\n\
+    * Seth A Sharp ([email](mailto:ssharp@stanford.edu))\n\
+    * Ankit M Arni ([email](mailto:a.m.arni@exeter.ac.uk))\n\
+    * Richard A Oram ([email](mailto:r.oram@exeter.ac.uk))\n\
+    * Michael N Weedon ([email](mailto:m.n.weedon@exeter.ac.uk))\n\
+    * Kashyap A Patel ([email](mailto:k.a.patel@exeter.ac.uk))\n\
+    \n### References\n\
+    1. Oram RA, Patel K, Hill A, et al. (2016) A Type 1 Diabetes Genetic Risk Score Can Aid Discrimination Between Type 1 and Type 2 Diabetes in Young Adults. Diabetes Care 39(3): 337-344. [10.2337/dc15-1111](https://doi.org/10.2337/dc15-1111).\n\
+    2. Patel KA, Oram RA, Flanagan SE, et al. (2016) Type 1 Diabetes Genetic Risk Score: A Novel Tool to Discriminate Monogenic and Type 1 Diabetes. Diabetes 65(7): 2094-2099. [10.2337/db15-1690](https://doi.org/10.2337/db15-1690).\n\
+    3. Sharp SA, Rich SS, Wood AR, et al. (2019) Development and Standardization of an Improved Type 1 Diabetes Genetic Risk Score for Use in Newborn Screening and Incident Diagnosis. Diabetes Care 42(2): 200-207. [10.2337/dc18-1785](https://doi.org/10.2337/dc18-1785).\n\
+    \n"
diff --git a/recipes/t1k/meta.yaml b/recipes/t1k/meta.yaml
index 0d0dafd4222dd..8a80c8f20c3f9 100644
--- a/recipes/t1k/meta.yaml
+++ b/recipes/t1k/meta.yaml
@@ -1,15 +1,17 @@
-{% set version = "1.0.2" %}
+{% set version = "1.0.5" %}
 
 package:
   name: t1k
   version: '{{ version }}'
 
 build:
-  number: 1
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('t1k', max_pin="x") }}
 
 source:
   url: https://github.com/mourisl/T1K/archive/v{{ version }}.tar.gz
-  sha256: 61065103c8c27cc0c58273bb166f2bf4b731715faa832847cb2863028f2ea515
+  sha256: 8230d732ec92f66ca7dedb5786e8823d5def8c00dd020d9b99a889de8ed849e3
 
 requirements:
   build:
@@ -40,4 +42,5 @@ about:
   home: https://github.com/mourisl/T1K
   summary: T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with RNA-seq, WGS or WES data. 
   license: MIT
+  license_family: MIT
   license_file: LICENSE.txt
diff --git a/recipes/t_coffee b/recipes/t_coffee
new file mode 120000
index 0000000000000..8e7ab1b381a35
--- /dev/null
+++ b/recipes/t_coffee
@@ -0,0 +1 @@
+t-coffee
\ No newline at end of file
diff --git a/recipes/t_coffee/build.sh b/recipes/t_coffee/build.sh
deleted file mode 100755
index 8ccaf32698633..0000000000000
--- a/recipes/t_coffee/build.sh
+++ /dev/null
@@ -1,18 +0,0 @@
-#!/bin/bash
-
-export CFLAGS="-I$PREFIX/include"
-export LDFLAGS="-L$PREFIX/lib"
-
-TCOFFEE_FOLDER_NAME="${PKG_NAME}-${PKG_VERSION}"
-TCOFFEE_INSTALL_PATH="$PREFIX/lib/$TCOFFEE_FOLDER_NAME"
-
-chmod +x T-COFFEE_installer_Version_*_linux_x64.bin
-./T-COFFEE_installer_Version_*_linux_x64.bin \
-    --prefix "$TCOFFEE_INSTALL_PATH" \
-    --mode unattended \
-    --user_email username@hostname.com
-
-cp -rf "$RECIPE_DIR/t_coffee" "$TCOFFEE_INSTALL_PATH"
-ln -s "$TCOFFEE_INSTALL_PATH/t_coffee" "$SP_DIR/t_coffee"
-sed -i "s|{{TCOFFEE_FOLDER_NAME}}|$TCOFFEE_FOLDER_NAME|g" "$TCOFFEE_INSTALL_PATH/t_coffee/config.py"
-
diff --git a/recipes/t_coffee/meta.yaml b/recipes/t_coffee/meta.yaml
deleted file mode 100644
index 56f78fb27a755..0000000000000
--- a/recipes/t_coffee/meta.yaml
+++ /dev/null
@@ -1,39 +0,0 @@
-package:
-  name: t_coffee
-  version: "13.45.0"
-
-source:
-  url: http://www.tcoffee.org/Packages/Stable/Latest/T-COFFEE_installer_Version_13.45.0.4846264_linux_x64.bin
-  sha256: 0eb0e2b1283650ee8bf366185a350f504e82cbdb5542b3a7b85b685811b61ef5
-
-build:
-  skip: True  # [osx]
-  number: 0
-  entry_points:
-    - t_coffee = t_coffee.__main__:main
-
-requirements:
-  build:
-    - {{ compiler('cxx') }}
-  host:
-    - curl
-    - openssl
-    - python
-    - zlib
-  run:
-    - curl
-    - openssl
-    - perl
-    - python
-    - zlib
-
-test:
-  commands:
-    - HOME=/tmp t_coffee
-    - HOME=/tmp t_coffee --help
-    - HOME=/tmp t_coffee 2>&1 |grep "mafft is  Installed" >/dev/null
-
-about:
-  home: http://www.tcoffee.org/Projects/tcoffee/
-  license: GNU
-  summary: A collection of tools for Computing, Evaluating and Manipulating Multiple Alignments of DNA, RNA, Protein Sequences and Structures.
diff --git a/recipes/t_coffee/t_coffee/__init__.py b/recipes/t_coffee/t_coffee/__init__.py
deleted file mode 100644
index e69de29bb2d1d..0000000000000
diff --git a/recipes/t_coffee/t_coffee/__main__.py b/recipes/t_coffee/t_coffee/__main__.py
deleted file mode 100644
index ed71679c811cb..0000000000000
--- a/recipes/t_coffee/t_coffee/__main__.py
+++ /dev/null
@@ -1,32 +0,0 @@
-from __future__ import absolute_import, print_function
-
-import sys
-import subprocess
-
-from . import config
-
-
-def main():
-    """Run the ``t_coffee`` multiple sequence alignment tool.
-
-    Parameters
-    ----------
-    argv : list, optional
-        A list of arguments to pass on to ``t_coffee``.
-    """
-    print("\n" + "*" * 80)
-    print('Command line arguments: {}'.format(sys.argv))
-    print("Install folder: {}".format(config.tcoffee_install_dir))
-    print("*" * 80 + "\n")
-    env = config.get_tcoffee_environ()
-    child_process = subprocess.Popen([config.tcoffee_exe_file] + sys.argv[1:], env=env)
-    result, error_message = child_process.communicate()
-    print("\n" + "*" * 80)
-    print("Result: {}".format(result))
-    print("Error message: {}".format(error_message))
-    print("*" * 80 + "\n")
-    return child_process.returncode
-
-
-if __name__ == '__main__':
-    main()
diff --git a/recipes/t_coffee/t_coffee/config.py b/recipes/t_coffee/t_coffee/config.py
deleted file mode 100644
index 24b61c8b8696c..0000000000000
--- a/recipes/t_coffee/t_coffee/config.py
+++ /dev/null
@@ -1,34 +0,0 @@
-import os
-import os.path as op
-import sys
-import tempfile
-
-tcoffee_install_dir = op.normpath(op.join(op.dirname(__file__), '..', '..', '..', '{{TCOFFEE_FOLDER_NAME}}'))
-tcoffee_bin_dir = op.join(tcoffee_install_dir, 'bin')
-tcoffee_exe_file = op.join(tcoffee_bin_dir, 't_coffee')
-if sys.platform.startswith('linux'):
-    platform = 'linux'
-elif sys.platform == 'darwin':
-    platform = 'macosx'
-else:
-    raise Exception("Unsupported platform '%s'" % sys.platform)
-tcoffee_plugins_dir = op.join(tcoffee_install_dir, 'plugins', platform)
-tcoffee_perl_dir = op.join(tcoffee_install_dir, 'perl', 'lib', 'perl5')
-tcoffee_default_email = 'username@example.org'
-
-
-def get_tcoffee_environ():
-    env = os.environ.copy()
-    if 'TMP_4_TCOFFEE' not in env:
-        env['TMP_4_TCOFFEE'] = tempfile.mkdtemp()
-    if 'PLUGINS_4_TCOFFEE' not in env:
-        env['PLUGINS_4_TCOFFEE'] = tcoffee_plugins_dir
-    if 'MAFFT_BINARIES' not in env:
-        env['MAFFT_BINARIES'] = tcoffee_plugins_dir
-    if 'PERL5LIB' not in env:
-        env['PERL5LIB'] = tcoffee_perl_dir
-    elif tcoffee_perl_dir not in env['PERL5LIB']:
-        env['PERL5LIB'] = tcoffee_plugins_dir + ':' + env['PERL5LIB']
-    if 'EMAIL_4_TCOFFEE' not in env or not env['EMAIL_4_TCOFFEE']:
-        env['EMAIL_4_TCOFFEE'] = tcoffee_default_email
-    return env
diff --git a/recipes/tabixpp/meta.yaml b/recipes/tabixpp/meta.yaml
index 66ed1498535c7..b8f8488b7f72c 100644
--- a/recipes/tabixpp/meta.yaml
+++ b/recipes/tabixpp/meta.yaml
@@ -12,12 +12,16 @@ source:
   patches:
     - shared_lib.patch
     - pkg-config.patch  # [osx]
-- url: https://github.com/samtools/htslib/releases/download/1.17/htslib-1.17.tar.bz2
-  sha256: 763779288c40f07646ec7ad98b96c378c739171d162ad98398868783b721839f
+- url: https://github.com/samtools/htslib/releases/download/1.19.1/htslib-1.19.1.tar.bz2
+  sha256: 222d74d3574fb67b158c6988c980eeaaba8a0656f5e4ffb76b5fa57f035933ec
   folder: htslib
 
 build:
-  number: 0
+  number: 2
+  run_exports:
+    # Observed ABI version increase from 1.1.0 to 1.1.2.
+    # Hence, we pin to the patch version even.
+    - {{ pin_subpackage(name, max_pin="x.x.x") }}
 
 requirements:
   build:
@@ -49,3 +53,5 @@ extra:
     - biotools:tabixpp
   recipe-maintainers:
     - jpuritz
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/tabixpp/shared_lib.patch b/recipes/tabixpp/shared_lib.patch
index 819773b164a42..da684d327f915 100644
--- a/recipes/tabixpp/shared_lib.patch
+++ b/recipes/tabixpp/shared_lib.patch
@@ -38,9 +38,10 @@ index f2ba44e..7718d76 100644
  DFLAGS =	-D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE
  BIN =		tabix++
 -LIB =		libtabix.a
-+LIB =		libtabixpp.a
- SOVERSION =	1
+-SOVERSION =	1
 -SLIB =		libtabix.so.$(SOVERSION)
++LIB =		libtabixpp.a
++SOVERSION =	0
 +SLIB =		libtabixpp.so.$(SOVERSION)
  OBJS =		tabix.o
  SUBDIRS =	.
diff --git a/recipes/table2asn/meta.yaml b/recipes/table2asn/meta.yaml
index 35fb2ad798c9e..309a04dc74f0f 100644
--- a/recipes/table2asn/meta.yaml
+++ b/recipes/table2asn/meta.yaml
@@ -1,7 +1,7 @@
 {% set name = "table2asn" %}
-{% set version = "1.0.883" %}
-{% set sha256 = "56f47a5cf69d93955b7ee32e6e3de82aa34d35c84644a0fc2d160c743d084417" %}
-{% set release_date = "2023-07-13" %}
+{% set version = "1.28.943" %}
+{% set sha256 = "91632c6442986d5af455421ed8121647f9bd90e64560ba27ae0b2ab0a1289ae6" %}
+{% set release_date = "2023-10-05" %}
 
 package:
   name: {{ name }}
@@ -10,12 +10,14 @@ package:
 
 source:
 - url: https://ftp.ncbi.nlm.nih.gov/asn1-converters/versions/{{ release_date }}/by_program/{{ name }}/mac.{{ name }}.gz  # [osx]
-  sha256: daad04b14e088af7c69df606e2de859e83e4d3f35689642270e869c98da062cc   # [osx]
+  sha256: 3ecc9fc29beb69640d47cd49a43b342ee6d7627f25c7b2d78dd44fce00cd2c6d   # [osx]
 - url: https://ftp.ncbi.nlm.nih.gov/asn1-converters/versions/{{ release_date }}/by_program/{{ name }}/linux64.{{ name }}.gz  # [linux]
   sha256: {{ sha256 }}  # [linux]
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage('table2asn', max_pin="x.x") }}
 
 requirements:
   host:
diff --git a/recipes/tadlib/meta.yaml b/recipes/tadlib/meta.yaml
new file mode 100644
index 0000000000000..ecf8487e04ced
--- /dev/null
+++ b/recipes/tadlib/meta.yaml
@@ -0,0 +1,64 @@
+{% set name = "tadlib" %}
+{% set version = "0.4.5.post1" %}
+
+package:
+  name: '{{ name|lower }}'
+  version: '{{ version }}'
+
+source:
+  url: https://pypi.io/packages/source/t/tadlib/TADLib-0.4.5.post1.tar.gz
+  sha256: 37dd485ff97588d037a6d287cce5de152bcbd3dd607c79ff9704d5a45015961f
+
+build:
+  number: 0
+  noarch: python
+  script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  host:
+    - _libgcc_mutex 0.1 conda_forge
+    - _openmp_mutex 4.5 2_gnu
+    - ca-certificates 2023.7.22 hbcca054_0
+    - ld_impl_linux-64 2.40 h41732ed_0
+    - libffi 3.4.2 h7f98852_5
+    - libgcc-ng 13.2.0 h807b86a_2
+    - libgomp 13.2.0 h807b86a_2
+    - ncurses 6.4 hcb278e6_0
+    - openssl 3.1.3 hd590300_0
+    - pip 23.2.1 pyhd8ed1ab_0
+    - python 3.10.12 hd12c33a_0_cpython
+    - readline 8.2 h8228510_1
+    - setuptools 68.2.2 pyhd8ed1ab_0
+    - tk 8.6.13 h2797004_0
+    - wheel 0.41.2 pyhd8ed1ab_0
+    - xz 5.2.6 h166bdaf_0
+  run:
+    - cooler
+    - matplotlib-base
+    - numpy
+    - pomegranate
+    - python >=3.5
+    - python_abi
+    - scikit-learn
+    - scipy
+
+test:
+  imports:
+    - tadlib
+    - tadlib.calfea
+    - tadlib.domaincaller
+    - tadlib.hitad
+    - tadlib.visualize
+
+about:
+  home: https://github.com/XiaoTaoWang/TADLib/
+  license: GPLv3
+  license_family: GPL3
+  license_file: LICENSE
+  summary: A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
+  dev_url: https://github.com/XiaoTaoWang/TADLib/
+
+extra:
+  recipe-maintainers: ninashenker
diff --git a/recipes/tadrep/meta.yaml b/recipes/tadrep/meta.yaml
new file mode 100644
index 0000000000000..d88f8af6645d0
--- /dev/null
+++ b/recipes/tadrep/meta.yaml
@@ -0,0 +1,53 @@
+{% set name = "tadrep" %}
+{% set version = "0.9.2" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/oschwengers/tadrep/archive/v{{ version }}.tar.gz
+  sha256: '53866c0b538f1dc85dc976527127a1564586925953930b30368175c9873936ba'
+
+build:
+  noarch: python
+  number: 0
+  script: {{ PYTHON }} -m pip install --no-deps --no-build-isolation --no-cache-dir . -vvv
+  entry_points:
+    - tadrep = tadrep.main:main
+  run_exports:
+    - {{ pin_subpackage('tadrep', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.8
+    - pip
+  run:
+    - python >=3.8
+    - biopython >=1.80
+    - xopen >=1.5.0
+    - pyrodigal >=2.1.0
+    - blast >=2.12.0
+    - cd-hit >=4.8.1
+    - matplotlib-base >=3.7
+    - pygenomeviz >=0.4
+
+test:
+  import:
+    - Bio.SeqIO
+    - pyrodigal
+  commands:
+    - tadrep --help
+
+about:
+  home: "https://github.com/oschwengers/tadrep"
+  license: "GPL-3.0-or-later"
+  license_family: GPL3
+  license_file: LICENSE
+  summary: 'TaDRep: Targeted Detection and Reconstruction of Plasmids'
+  dev_url: "https://github.com/oschwengers/tadrep"
+  doc_url: "https://github.com/oschwengers/tadrep/blob/main/README.md"
+
+extra:
+  recipe-maintainers:
+    - oschwengers
diff --git a/recipes/tajimas_d/meta.yaml b/recipes/tajimas_d/meta.yaml
index a9d4c00070e44..f218c3de18a2e 100644
--- a/recipes/tajimas_d/meta.yaml
+++ b/recipes/tajimas_d/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "tajimas_d" %}
-{% set version = "2.0.0" %}
+{% set version = "2.0.2" %}
 
 package:
   name: {{ name }}
@@ -7,12 +7,16 @@ package:
 
 source:
   url: https://github.com/not-a-feature/tajimas_d/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: c877bc1e1ca78c2e8bd4b4f5fd37aa40fcd5a91880e508c9038eb5f8479015e9
+  sha256: 899cf84e8e89ecccc9fbd106c21ee2777bc7736c163b5470e4cce3b843cbe36a
 
 build:
   noarch: python
   number: 0
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  entry_points:
+    - tajimas_d = tajimas_d._tajimas_d:run_cli
+  run_exports:
+    - {{ pin_subpackage('tajimas_d', max_pin="x") }}
 
 requirements:
   host:
@@ -24,16 +28,13 @@ requirements:
 test:
   imports:
     - tajimas_d
-  commands:
-    - pip check
   requires:
-    - pip
     - miniFasta
 
 about:
   home: https://github.com/not-a-feature/tajimas_d
   license: GPL-3.0-or-later
-  license_family: GPL
+  license_family: GPL3
   license_file: LICENSE
   summary: 'Computes Tajimas D, the Pi- or Watterson-Estimator for multiple sequences.'
   description: |
diff --git a/recipes/talon/meta.yaml b/recipes/talon/meta.yaml
index c13fd4bec353e..fa0473fb78ea8 100644
--- a/recipes/talon/meta.yaml
+++ b/recipes/talon/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "5.0" %}
+{% set version = "6.0.1" %}
 
 package:
   name: talon
@@ -6,30 +6,46 @@ package:
 
 source:
   url: https://github.com/mortazavilab/TALON/archive/v{{ version }}.zip
-  sha256: d64cf0f602be5e8cac989e7ddaa6d82c0455f94f29368782348adf36feaf0a24
-
+  sha256: 62f5681c1d067c451a6879c927c62ca47bf640745cdc24e9529e7ef0ac01d689
 
 build:
   noarch: python
   number: 0
-  script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
+  script: {{ PYTHON }} -m pip install . --no-build-isolation --no-deps -vvv
+  entry_points:
+    - talon=talon.talon:main
+    - talon_label_reads=talon.talon_label_reads:main
+    - talon_initialize_database=talon.initialize_talon_database:main
+    - talon_filter_transcripts=talon.post.filter_talon_transcripts:main
+    - talon_abundance=talon.post.create_abundance_file_from_database:main
+    - talon_create_GTF=talon.post.create_GTF_from_database:main
+    - talon_create_adata=talon.post.create_anndata_from_database:main
+    - talon_reformat_gtf=talon.reformat_gtf:main
+    - talon_generate_report=talon.post.generate_talon_report:main
+    - talon_summarize=talon.post.summarize_datasets:main
+    - talon_fetch_reads=talon.post.get_read_annotations:main
+    - talon_get_sjs=talon.post.get_transcript_sjs:main
+    - talon_longest_end=talon.post.call_longest_ends:main
+  run_exports:
+    - {{ pin_subpackage('talon', max_pin="x.x") }}
 
 requirements:
   host:
-    - python >=3.6,<=3.7
+    - python >=3.6,<3.8
     - pip
- 
   run:
-    - python >=3.6,<=3.7
+    - python >=3.6,<3.8
+    - bamread >=0.0.11
     - pandas
     - pybedtools
+    - pyranges
     - pysam >=0.15.4
     - pyfaidx
-   
+    - scanpy
 
 test:
   commands:
-    - talon --help 2>&1 | grep usage 
+    - talon --help 2>&1 | grep usage
     - talon_label_reads --help
     - talon_initialize_database --help
     - talon_filter_transcripts --help
@@ -38,6 +54,8 @@ test:
 about:
   home: https://github.com/mortazavilab/TALON
   license: MIT
+  license_family: MIT
+  license_file: LICENSE
   summary: |
     TALON is a Python package for identifying and quantifying known and novel 
     genes/isoforms in long-read transcriptome data sets. TALON is 
diff --git a/recipes/tandem-genotypes/meta.yaml b/recipes/tandem-genotypes/meta.yaml
index 3823643fd0321..c9fee5ae68620 100644
--- a/recipes/tandem-genotypes/meta.yaml
+++ b/recipes/tandem-genotypes/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.9.0" %}
+{% set version = "1.9.1" %}
 
 package:
   name: tandem-genotypes
@@ -6,11 +6,13 @@ package:
 
 source:
   url: https://github.com/mcfrith/tandem-genotypes/archive/{{ version }}.tar.gz
-  sha256: d2ce5726335c5849fd32c88587686ac4331c197a217d68fc8ebfab94f7182724
+  sha256: e0322c1adb59d152d6dd2bc0305f1da9f7ae1769f9c5016e1cfc1cbbc459b9f4
 
 build:
   number: 0
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('tandem-genotypes', max_pin="x") }}
   script: python setup.py install --single-version-externally-managed --record=record.txt
 
 requirements:
@@ -20,6 +22,7 @@ requirements:
   run:
     - python
     - r-base
+    - lamassemble
 
 test:
   commands:
diff --git a/recipes/tantan/meta.yaml b/recipes/tantan/meta.yaml
index e7a25672a25d7..26e07ef7347b1 100644
--- a/recipes/tantan/meta.yaml
+++ b/recipes/tantan/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "40" %}
+{% set version = "49" %}
 
 package:
   name: tantan
@@ -6,11 +6,13 @@ package:
 
 source:
   url: https://gitlab.com/mcfrith/tantan/-/archive/{{ version }}/tantan-{{ version }}.tar.gz
-  sha256: 61303c88cdf41fa5bcb5f77f674b4fac2a9bc0e4c9abb3b9d75af35c47162240
+  sha256: 851eb8f1c0f169107cebe16cb9e973c49a54d0f00413063b514ea0edfa3a5238
 
 build:
-  number: 2
+  number: 0
   script: make install prefix=$PREFIX
+  run_exports:
+    - {{ pin_subpackage('tantan', max_pin="None") }}
 
 requirements:
   build:
@@ -29,5 +31,10 @@ test:
 about:
   home: https://gitlab.com/mcfrith/tantan
   license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: COPYING.txt
   summary: "tantan masks simple regions (low complexity & short-period tandem repeats) in biological sequences."
+
+extra:
+  identifiers:
+    - doi:10.1093/nar/gkq1212
diff --git a/recipes/taxmyphage/meta.yaml b/recipes/taxmyphage/meta.yaml
new file mode 100644
index 0000000000000..fac201dd375df
--- /dev/null
+++ b/recipes/taxmyphage/meta.yaml
@@ -0,0 +1,57 @@
+{% set name = "taxmyphage" %}
+{% set version = "0.2.9" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/taxmyphage-{{ version }}.tar.gz
+  sha256: 53208a3490d4c6ca0dab9b762ab0c9c609dcff2489926e3659277680fb4ef6b6
+
+build:
+  entry_points:
+    - taxmyphage = taxmyphage.__main__:main
+  noarch: python
+  script: "{{ PYTHON }} -m pip install . -vv"
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('taxmyphage', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.9,<3.13
+    - poetry-core >=1.0.0
+    - pip
+  run:
+    - python >=3.9,<3.13
+    - biopython >=1.81.0,<2.0.0
+    - pandas >=2.1.1,<3.0.0
+    - numpy >=1.26.0,<2.0.0
+    - matplotlib-base >=3.8.0,<4.0.0
+    - seaborn >=0.13.0,<0.14.0
+    - python-wget >=3.2.0,<4.0.0
+    - scipy >=1.11.3,<2.0.0
+    - tqdm >=4.66.1,<5.0.0
+    - openpyxl >=3.1.2,<4.0.0
+    - networkx >=3.1.0,<4.0.0
+    - icecream >=2.1.3,<3.0.0
+    - importlib-metadata >=6.8.0,<7.0.0
+    - zipp >=3.17.0,<4.0.0
+    - blast >=2.14.0,<3.0.0
+    - mash >=2.3,<3.0.0
+
+test:
+  commands:
+    - taxmyphage --help
+
+
+about:
+  home: https://github.com/amillard/tax_myPHAGE
+  summary: Script to assign taxonomy to a bacteriophage at the genus and species level
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - rdenise
diff --git a/recipes/taxonkit/meta.yaml b/recipes/taxonkit/meta.yaml
index aa03a88e4a8b0..1027498def2d6 100644
--- a/recipes/taxonkit/meta.yaml
+++ b/recipes/taxonkit/meta.yaml
@@ -1,17 +1,21 @@
-{% set version = "0.14.2" %}
+{% set version = "0.16.0" %}
 
 package:
   name: taxonkit
   version: {{ version }}
 
 build:
-  number: 0
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('taxonkit', max_pin='x.x') }}
 
 source:
   - url: https://github.com/shenwei356/taxonkit/releases/download/v{{ version }}/taxonkit_darwin_amd64.tar.gz # [osx]
-    md5: e6b16234bdd94ea554a963954f80a3f9 # [osx]
-  - url: https://github.com/shenwei356/taxonkit/releases/download/v{{ version }}/taxonkit_linux_amd64.tar.gz # [linux]
-    md5: 0eeb8eb9234b09e0b105e5dd44d7f117 # [linux]
+    md5: 0f36df3f255caf87004087b4f6a3c718 # [osx]
+  - url: https://github.com/shenwei356/taxonkit/releases/download/v{{ version }}/taxonkit_linux_amd64.tar.gz # [linux and x86_64]
+    md5: dcf41d21493a29594b399cdafce16233 # [linux and x86_64]
+  - url: https://github.com/shenwei356/taxonkit/releases/download/v{{ version }}/taxonkit_linux_arm64.tar.gz # [linux and aarch64]
+    md5: f07a5cff687752de4d03a0b1e6df9a9c # [linux and aarch64]
 
 test:
   commands:
@@ -24,6 +28,8 @@ about:
   license_family: MIT
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   skip-lints:
     - should_be_noarch_generic
     - should_not_be_noarch_source
diff --git a/recipes/taxonomy/build.sh b/recipes/taxonomy/build.sh
index 9a5673054d7ff..e7403810f522a 100644
--- a/recipes/taxonomy/build.sh
+++ b/recipes/taxonomy/build.sh
@@ -1,17 +1,18 @@
 #!/bin/bash
 
-set -ex
+set -euo
+
+# Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
+# We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
+export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="${BUILD_PREFIX}/.cargo"
 
 if [ `uname` == Darwin ]; then
-  export HOME=`mktemp -d`
+	export HOME=`mktemp -d`
+	export PATH="$CARGO_HOME/bin:$PATH"
 fi
 
-curl https://sh.rustup.rs -sSf | sh -s -- --default-toolchain nightly --profile=minimal -y
-
-export PATH="$HOME/.cargo/bin:$PATH"
-
-export CARGO_TARGET_X86_64_UNKNOWN_LINUX_GNU_LINKER="$CC"
-
-maturin build --interpreter python --release #--cargo-extra-args="--features=python"
+# build statically linked binary with Rust
+RUST_BACKTRACE=1
+maturin build -b cffi --interpreter "${PYTHON}" --release --strip #--cargo-extra-args="--features=python"
 
-$PYTHON -m pip install target/wheels/*.whl --no-deps --ignore-installed -vv
+${PYTHON} -m pip install . --no-deps --no-build-isolation -vvv
diff --git a/recipes/taxonomy/meta.yaml b/recipes/taxonomy/meta.yaml
index 793be03563091..eb6ba753a1b93 100644
--- a/recipes/taxonomy/meta.yaml
+++ b/recipes/taxonomy/meta.yaml
@@ -1,26 +1,30 @@
 {% set name = "taxonomy" %}
-{% set version = "0.9.0" %}
+{% set version = "0.10.0" %}
 
 package:
   name: "{{ name|lower }}"
   version: "{{ version }}"
 
 source:
-  url: https://github.com/onecodex/taxonomy/archive/v{{ version }}.tar.gz
-  sha256: 3d9fb6604ce119bd46635eb1ab43212f9da591f0b6fc53cfcd8c97598025d159
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/taxonomy-{{ version }}.tar.gz
+  sha256: 3ff7e2299c9554b8b8be2f00bb4cd9722d0ae820e8a271aaf1390a7e790c3f51
+  patches:
+    - pyproject.patch
 
 build:
   number: 1
-  skip: True  # [py < 37]
+  run_exports:
+    - {{ pin_subpackage('taxonomy', max_pin="x.x") }}
 
 requirements:
   build:
     - {{ compiler('c') }}
+    - {{ compiler('rust') }}
   host:
+    - python
     - pip
     - cffi
     - maturin
-    - python
   run:
     - python
     - cffi
@@ -31,8 +35,7 @@ test:
 
 about:
   home: https://github.com/onecodex/taxonomy/
-  license: MIT License
+  license: MIT
   license_family: MIT
   license_file: LICENSE
   summary: "Python and Rust library for loading, saving, and manipulating taxonomic trees"
-
diff --git a/recipes/nrpys/patch b/recipes/taxonomy/pyproject.patch
similarity index 52%
rename from recipes/nrpys/patch
rename to recipes/taxonomy/pyproject.patch
index 99ab333ca033e..7d6fc2b1b3235 100644
--- a/recipes/nrpys/patch
+++ b/recipes/taxonomy/pyproject.patch
@@ -7,9 +7,3 @@
  build-backend = "maturin"
  
  [project]
-@@ -13,3 +13,5 @@ classifiers = [
- 
- [tool.maturin]
- python-source = "python"
-+features = ["pyo3/extension-module"]
-+cargo-extra-args = "--features extension-module"
diff --git a/recipes/taxopy/meta.yaml b/recipes/taxopy/meta.yaml
index 7cd621888b9ac..fe5b571c1e819 100644
--- a/recipes/taxopy/meta.yaml
+++ b/recipes/taxopy/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "taxopy" %}
-{% set version = "0.11.0" %}
+{% set version = "0.12.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,12 +7,14 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 7ed459e48041a975f3cc9aa2bb4045e65382d45919598d497ca1f86d2f88bd28
+  sha256: 589e0d600a03535f1689d4be27c90af44b0552f26bdd7b27b31799cc098da828
 
 build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage('taxopy', max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/taxor/build.sh b/recipes/taxor/build.sh
new file mode 100755
index 0000000000000..92946f0a50a31
--- /dev/null
+++ b/recipes/taxor/build.sh
@@ -0,0 +1,10 @@
+#!/bin/bash
+
+mkdir ${SRC_DIR}/build/
+cd ${SRC_DIR}/build/
+cmake ${SRC_DIR}/src
+cmake --build . --config Release
+
+cp ${SRC_DIR}/build/main/taxor $PREFIX/bin
+chmod +x $PREFIX/bin/taxor
+
diff --git a/recipes/taxor/meta.yaml b/recipes/taxor/meta.yaml
new file mode 100755
index 0000000000000..767c30ea4dcda
--- /dev/null
+++ b/recipes/taxor/meta.yaml
@@ -0,0 +1,47 @@
+{% set version = "0.1.3" %}
+
+package:
+  name: taxor
+  version: {{ version }}
+
+source:
+  url: https://github.com/JensUweUlrich/Taxor/archive/refs/tags/{{ version }}.tar.gz  # [linux]
+  md5: 7bffd64282894433b4db60af8f1052c9  # [linux]
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('taxor', max_pin='x.x.x') }}
+  skip: true  # [osx]
+
+requirements:
+  build:
+    - make
+    - {{ compiler('cxx') }}
+    - {{ compiler('c') }}
+    - cmake >=3.21
+  host:
+    - zlib
+    - bzip2
+    - libgomp # [linux]
+    - cxxopts >=2.2.0
+    - grep
+    - coreutils
+    - curl
+    - diffutils
+  run:
+    - grep
+    - coreutils
+    - curl
+    - diffutils
+
+test:
+  commands:
+    - taxor --help
+
+about:
+  home: https://github.com/JensUweUlrich/Taxor
+  summary: Fast and space-efficient taxonomic classification of long reads
+  license: BSD-3-Clause
+  license_family: BSD
+  license_file: LICENSE.md
diff --git a/recipes/taxpasta/meta.yaml b/recipes/taxpasta/meta.yaml
index 7480ef4740dfa..3778c68e675b9 100644
--- a/recipes/taxpasta/meta.yaml
+++ b/recipes/taxpasta/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "taxpasta" %}
-{% set version = "0.4.1" %}
-{% set sha256 = "685839dbc90b4dc6eb153395a42c8128f8bf472b78f1f03c5a77849d4112b0d7" %}
+{% set version = "0.6.1" %}
+{% set sha256 = "468141b00bb286e5b52fb47e7046af68d4f849eecb209a3ec77b0ce4da5dcf01" %}
 
 package:
   name: {{ name|lower }}
@@ -16,6 +16,8 @@ build:
   noarch: python
   script: {{ PYTHON }} -m pip install . -vv
   number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   host:
diff --git a/recipes/taxtastic/meta.yaml b/recipes/taxtastic/meta.yaml
index b177bdca4b477..851ec1d809258 100644
--- a/recipes/taxtastic/meta.yaml
+++ b/recipes/taxtastic/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.9.3" %}
-{% set sha256 = "37e8b029e5c79ed326ad3944914a26c7c638a0765e5eb80e78511db60a52ee1b" %}
+{% set version = "0.10.0" %}
+{% set sha256 = "32db30aa2e499fbae913b991cd087fa69684ac4ff934b957c30b6085866f1748" %}
 
 package:
   name: taxtastic
@@ -11,24 +11,26 @@ source:
 
 build:
   noarch: python
-  number: 0
+  number: 1
   script: python setup.py install --single-version-externally-managed --record=record.txt
+  run_exports:
+    - {{ pin_subpackage('taxtastic', max_pin='x.x') }}
 
 requirements:
   host:
-    - python >3
+    - python >=3
     - setuptools
-    - sqlalchemy >=0.7
-    - decorator
-    - biopython
-    - xlrd
 
   run:
-    - python >3
-    - sqlalchemy >=0.7
+    - python >=3
+    - dendropy
+    - pyyaml
     - decorator
-    - biopython
-    - xlrd
+    - fastalite
+    - jinja2
+    - psycopg2-binary
+    - sqlalchemy >=2
+    - sqlparse
 
 test:
   imports:
diff --git a/recipes/tb-profiler/build.sh b/recipes/tb-profiler/build.sh
index ee5d4d66e8d82..4aaad0eabd6d3 100644
--- a/recipes/tb-profiler/build.sh
+++ b/recipes/tb-profiler/build.sh
@@ -1,8 +1,8 @@
 #!/bin/bash
 
 python -m pip install --no-deps --ignore-installed .
-gatk CreateSequenceDictionary -R $PREFIX/share/tbprofiler/tbdb.fasta
-samtools faidx $PREFIX/share/tbprofiler/tbdb.fasta
+# gatk CreateSequenceDictionary -R $PREFIX/share/tbprofiler/tbdb.fasta
+# samtools faidx $PREFIX/share/tbprofiler/tbdb.fasta
 bwa index $PREFIX/share/tbprofiler/tbdb.fasta
 # this downloads Mycobacterium_tuberculosis_h37rv DB to $PREFIX/share/snpeff-SNPEFF_VERSION/data
 snpEff download Mycobacterium_tuberculosis_h37rv
diff --git a/recipes/tb-profiler/meta.yaml b/recipes/tb-profiler/meta.yaml
index 7835c00bd7fd2..61d892d511497 100644
--- a/recipes/tb-profiler/meta.yaml
+++ b/recipes/tb-profiler/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "tb-profiler" %}
-{% set version = "4.4.2" %}
-{% set sha256 = "9496a6335138688b5896597e881d235a1a892c0d8b6b469c0a560e9bb2dc5c10" %}
+{% set version = "6.2.1" %}
+{% set sha256 = "11b4637a37be6fe501aa649ed8598c96e2043f2fbe0e6cf13e9cbf0b9ad8420b" %}
 
 package:
   name: {{name}}
@@ -13,25 +13,31 @@ source:
 build:
   noarch: python
   number: 0
+  run_exports:
+    - {{ pin_subpackage('tb-profiler', max_pin="x") }}
 
 requirements:
   host:
-    - python
+    - python >=3.8
     - pip
     - gatk4
     - samtools >=1.10
     - bwa
     - snpeff >=5.0
   run:
-    - python >=3.6
+    - python >=3.8
     - git
-    - kmc
     - jinja2
-    - weasyprint
-    - pathogen-profiler =2.0.4
+    - pathogen-profiler =4.2.0
     - filelock
-    - quickle
     - docxtpl
+    - iqtree
+    - usher
+    - joblib
+    - tqdm
+    - pysam
+    - rich-argparse
+
 test:
   imports:
     - tbprofiler
@@ -41,9 +47,10 @@ test:
 
 about:
   home: https://github.com/jodyphelan/TBProfiler
-  license: GPL3
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
-  summary: Profiling tool for Mycobacterium tuberculosis to detect drug resistance and lineage from WGS data
+  summary: Profiling tool for Mycobacterium tuberculosis to detect drug resistance and lineage from sequencing data
 
 extra:
   identifiers:
diff --git a/recipes/tb_variant_filter/meta.yaml b/recipes/tb_variant_filter/meta.yaml
index 863846f69b3d4..078595e65c98d 100644
--- a/recipes/tb_variant_filter/meta.yaml
+++ b/recipes/tb_variant_filter/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "tb_variant_filter" %}
-{% set version = "0.3.6" %}
-{% set sha256 = "0057d076e260e362399102f35a0cd9e80e04ab657a9d0db9c8dad90d6336e7d2" %}
+{% set version = "0.4.0" %}
+{% set sha256 = "ff2b232be94ea4768587d805741f4eddb36642f86159e591c267473e31275b9f" %}
 {% set author = "COMBAT-TB" %}
 
 package:
diff --git a/recipes/tbpore/meta.yaml b/recipes/tbpore/meta.yaml
index 39c5a58d61266..0931d21a6f35f 100644
--- a/recipes/tbpore/meta.yaml
+++ b/recipes/tbpore/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "tbpore" %}
-{% set version = "0.6.0" %}
+{% set version = "0.7.0" %}
 
 package:
   name: {{ name|lower }}
@@ -7,23 +7,24 @@ package:
 
 source:
   url:    https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 18f36797b172fd774dce664cdb252ffca1fa810a96777420dd04a39b1d22439d
-  
+  sha256: 9b9fd8cf7e6ec98d90ae196e4abcb7865fbb2f360c1fa1b4c6aa574cde87ec75
+
 build:
   number: 0
   noarch: python
   entry_points:
     - tbpore = tbpore.tbpore:main
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('tbpore', max_pin="x") }}
 
 requirements:
   host:
-    - python >=3.8,<3.10
-    - poetry =1.3
+    - python >=3.8
+    - poetry-core >=1.0.0
     - pip
-  
   run:
-    - python >=3.8,<3.10
+    - python >=3.8
     - mykrobe =0.12
     - rasusa
     - samtools =1.13
@@ -36,7 +37,7 @@ requirements:
     - loguru >=0.5.3,<1.0
     - pyyaml >=6.0
     - pandas >=1.4.2,<2.0
-    - pysam =0.17
+    - pysam <1.0
     - networkx >=2.8,<3.0
     - nanoq =0.9
 
@@ -49,6 +50,7 @@ test:
 about:
   home: https://github.com/mbhall88/tbpore
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary: Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data
 
@@ -56,3 +58,5 @@ extra:
   recipe-maintainers:
     - mbhall88
     - leoisl
+  identifiers:
+    - doi:10.1016/S2666-5247(22)00301-9
diff --git a/recipes/tbtamr/LICENSE b/recipes/tbtamr/LICENSE
new file mode 100644
index 0000000000000..f288702d2fa16
--- /dev/null
+++ b/recipes/tbtamr/LICENSE
@@ -0,0 +1,674 @@
+                    GNU GENERAL PUBLIC LICENSE
+                       Version 3, 29 June 2007
+
+ Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/>
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+                            Preamble
+
+  The GNU General Public License is a free, copyleft license for
+software and other kinds of works.
+
+  The licenses for most software and other practical works are designed
+to take away your freedom to share and change the works.  By contrast,
+the GNU General Public License is intended to guarantee your freedom to
+share and change all versions of a program--to make sure it remains free
+software for all its users.  We, the Free Software Foundation, use the
+GNU General Public License for most of our software; it applies also to
+any other work released this way by its authors.  You can apply it to
+your programs, too.
+
+  When we speak of free software, we are referring to freedom, not
+price.  Our General Public Licenses are designed to make sure that you
+have the freedom to distribute copies of free software (and charge for
+them if you wish), that you receive source code or can get it if you
+want it, that you can change the software or use pieces of it in new
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+
+  To protect your rights, we need to prevent others from denying you
+these rights or asking you to surrender the rights.  Therefore, you have
+certain responsibilities if you distribute copies of the software, or if
+you modify it: responsibilities to respect the freedom of others.
+
+  For example, if you distribute copies of such a program, whether
+gratis or for a fee, you must pass on to the recipients the same
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+  Developers that use the GNU GPL protect your rights with two steps:
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+giving you legal permission to copy, distribute and/or modify it.
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+changed, so that their problems will not be attributed erroneously to
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+    author attributions in that material or in the Appropriate Legal
+    Notices displayed by works containing it; or
+
+    c) Prohibiting misrepresentation of the origin of that material, or
+    requiring that modified versions of such material be marked in
+    reasonable ways as different from the original version; or
+
+    d) Limiting the use for publicity purposes of names of licensors or
+    authors of the material; or
+
+    e) Declining to grant rights under trademark law for use of some
+    trade names, trademarks, or service marks; or
+
+    f) Requiring indemnification of licensors and authors of that
+    material by anyone who conveys the material (or modified versions of
+    it) with contractual assumptions of liability to the recipient, for
+    any liability that these contractual assumptions directly impose on
+    those licensors and authors.
+
+  All other non-permissive additional terms are considered "further
+restrictions" within the meaning of section 10.  If the Program as you
+received it, or any part of it, contains a notice stating that it is
+governed by this License along with a term that is a further
+restriction, you may remove that term.  If a license document contains
+a further restriction but permits relicensing or conveying under this
+License, you may add to a covered work material governed by the terms
+of that license document, provided that the further restriction does
+not survive such relicensing or conveying.
+
+  If you add terms to a covered work in accord with this section, you
+must place, in the relevant source files, a statement of the
+additional terms that apply to those files, or a notice indicating
+where to find the applicable terms.
+
+  Additional terms, permissive or non-permissive, may be stated in the
+form of a separately written license, or stated as exceptions;
+the above requirements apply either way.
+
+  8. Termination.
+
+  You may not propagate or modify a covered work except as expressly
+provided under this License.  Any attempt otherwise to propagate or
+modify it is void, and will automatically terminate your rights under
+this License (including any patent licenses granted under the third
+paragraph of section 11).
+
+  However, if you cease all violation of this License, then your
+license from a particular copyright holder is reinstated (a)
+provisionally, unless and until the copyright holder explicitly and
+finally terminates your license, and (b) permanently, if the copyright
+holder fails to notify you of the violation by some reasonable means
+prior to 60 days after the cessation.
+
+  Moreover, your license from a particular copyright holder is
+reinstated permanently if the copyright holder notifies you of the
+violation by some reasonable means, this is the first time you have
+received notice of violation of this License (for any work) from that
+copyright holder, and you cure the violation prior to 30 days after
+your receipt of the notice.
+
+  Termination of your rights under this section does not terminate the
+licenses of parties who have received copies or rights from you under
+this License.  If your rights have been terminated and not permanently
+reinstated, you do not qualify to receive new licenses for the same
+material under section 10.
+
+  9. Acceptance Not Required for Having Copies.
+
+  You are not required to accept this License in order to receive or
+run a copy of the Program.  Ancillary propagation of a covered work
+occurring solely as a consequence of using peer-to-peer transmission
+to receive a copy likewise does not require acceptance.  However,
+nothing other than this License grants you permission to propagate or
+modify any covered work.  These actions infringe copyright if you do
+not accept this License.  Therefore, by modifying or propagating a
+covered work, you indicate your acceptance of this License to do so.
+
+  10. Automatic Licensing of Downstream Recipients.
+
+  Each time you convey a covered work, the recipient automatically
+receives a license from the original licensors, to run, modify and
+propagate that work, subject to this License.  You are not responsible
+for enforcing compliance by third parties with this License.
+
+  An "entity transaction" is a transaction transferring control of an
+organization, or substantially all assets of one, or subdividing an
+organization, or merging organizations.  If propagation of a covered
+work results from an entity transaction, each party to that
+transaction who receives a copy of the work also receives whatever
+licenses to the work the party's predecessor in interest had or could
+give under the previous paragraph, plus a right to possession of the
+Corresponding Source of the work from the predecessor in interest, if
+the predecessor has it or can get it with reasonable efforts.
+
+  You may not impose any further restrictions on the exercise of the
+rights granted or affirmed under this License.  For example, you may
+not impose a license fee, royalty, or other charge for exercise of
+rights granted under this License, and you may not initiate litigation
+(including a cross-claim or counterclaim in a lawsuit) alleging that
+any patent claim is infringed by making, using, selling, offering for
+sale, or importing the Program or any portion of it.
+
+  11. Patents.
+
+  A "contributor" is a copyright holder who authorizes use under this
+License of the Program or a work on which the Program is based.  The
+work thus licensed is called the contributor's "contributor version".
+
+  A contributor's "essential patent claims" are all patent claims
+owned or controlled by the contributor, whether already acquired or
+hereafter acquired, that would be infringed by some manner, permitted
+by this License, of making, using, or selling its contributor version,
+but do not include claims that would be infringed only as a
+consequence of further modification of the contributor version.  For
+purposes of this definition, "control" includes the right to grant
+patent sublicenses in a manner consistent with the requirements of
+this License.
+
+  Each contributor grants you a non-exclusive, worldwide, royalty-free
+patent license under the contributor's essential patent claims, to
+make, use, sell, offer for sale, import and otherwise run, modify and
+propagate the contents of its contributor version.
+
+  In the following three paragraphs, a "patent license" is any express
+agreement or commitment, however denominated, not to enforce a patent
+(such as an express permission to practice a patent or covenant not to
+sue for patent infringement).  To "grant" such a patent license to a
+party means to make such an agreement or commitment not to enforce a
+patent against the party.
+
+  If you convey a covered work, knowingly relying on a patent license,
+and the Corresponding Source of the work is not available for anyone
+to copy, free of charge and under the terms of this License, through a
+publicly available network server or other readily accessible means,
+then you must either (1) cause the Corresponding Source to be so
+available, or (2) arrange to deprive yourself of the benefit of the
+patent license for this particular work, or (3) arrange, in a manner
+consistent with the requirements of this License, to extend the patent
+license to downstream recipients.  "Knowingly relying" means you have
+actual knowledge that, but for the patent license, your conveying the
+covered work in a country, or your recipient's use of the covered work
+in a country, would infringe one or more identifiable patents in that
+country that you have reason to believe are valid.
+
+  If, pursuant to or in connection with a single transaction or
+arrangement, you convey, or propagate by procuring conveyance of, a
+covered work, and grant a patent license to some of the parties
+receiving the covered work authorizing them to use, propagate, modify
+or convey a specific copy of the covered work, then the patent license
+you grant is automatically extended to all recipients of the covered
+work and works based on it.
+
+  A patent license is "discriminatory" if it does not include within
+the scope of its coverage, prohibits the exercise of, or is
+conditioned on the non-exercise of one or more of the rights that are
+specifically granted under this License.  You may not convey a covered
+work if you are a party to an arrangement with a third party that is
+in the business of distributing software, under which you make payment
+to the third party based on the extent of your activity of conveying
+the work, and under which the third party grants, to any of the
+parties who would receive the covered work from you, a discriminatory
+patent license (a) in connection with copies of the covered work
+conveyed by you (or copies made from those copies), or (b) primarily
+for and in connection with specific products or compilations that
+contain the covered work, unless you entered into that arrangement,
+or that patent license was granted, prior to 28 March 2007.
+
+  Nothing in this License shall be construed as excluding or limiting
+any implied license or other defenses to infringement that may
+otherwise be available to you under applicable patent law.
+
+  12. No Surrender of Others' Freedom.
+
+  If conditions are imposed on you (whether by court order, agreement or
+otherwise) that contradict the conditions of this License, they do not
+excuse you from the conditions of this License.  If you cannot convey a
+covered work so as to satisfy simultaneously your obligations under this
+License and any other pertinent obligations, then as a consequence you may
+not convey it at all.  For example, if you agree to terms that obligate you
+to collect a royalty for further conveying from those to whom you convey
+the Program, the only way you could satisfy both those terms and this
+License would be to refrain entirely from conveying the Program.
+
+  13. Use with the GNU Affero General Public License.
+
+  Notwithstanding any other provision of this License, you have
+permission to link or combine any covered work with a work licensed
+under version 3 of the GNU Affero General Public License into a single
+combined work, and to convey the resulting work.  The terms of this
+License will continue to apply to the part which is the covered work,
+but the special requirements of the GNU Affero General Public License,
+section 13, concerning interaction through a network will apply to the
+combination as such.
+
+  14. Revised Versions of this License.
+
+  The Free Software Foundation may publish revised and/or new versions of
+the GNU General Public License from time to time.  Such new versions will
+be similar in spirit to the present version, but may differ in detail to
+address new problems or concerns.
+
+  Each version is given a distinguishing version number.  If the
+Program specifies that a certain numbered version of the GNU General
+Public License "or any later version" applies to it, you have the
+option of following the terms and conditions either of that numbered
+version or of any later version published by the Free Software
+Foundation.  If the Program does not specify a version number of the
+GNU General Public License, you may choose any version ever published
+by the Free Software Foundation.
+
+  If the Program specifies that a proxy can decide which future
+versions of the GNU General Public License can be used, that proxy's
+public statement of acceptance of a version permanently authorizes you
+to choose that version for the Program.
+
+  Later license versions may give you additional or different
+permissions.  However, no additional obligations are imposed on any
+author or copyright holder as a result of your choosing to follow a
+later version.
+
+  15. Disclaimer of Warranty.
+
+  THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
+APPLICABLE LAW.  EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
+HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY
+OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO,
+THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
+PURPOSE.  THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM
+IS WITH YOU.  SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF
+ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
+
+  16. Limitation of Liability.
+
+  IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
+WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
+THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY
+GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE
+USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF
+DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
+PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
+EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
+SUCH DAMAGES.
+
+  17. Interpretation of Sections 15 and 16.
+
+  If the disclaimer of warranty and limitation of liability provided
+above cannot be given local legal effect according to their terms,
+reviewing courts shall apply local law that most closely approximates
+an absolute waiver of all civil liability in connection with the
+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
+                     END OF TERMS AND CONDITIONS
+
+            How to Apply These Terms to Your New Programs
+
+  If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
+  To do so, attach the following notices to the program.  It is safest
+to attach them to the start of each source file to most effectively
+state the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+    <one line to give the program's name and a brief idea of what it does.>
+    Copyright (C) <year>  <name of author>
+
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+Also add information on how to contact you by electronic and paper mail.
+
+  If the program does terminal interaction, make it output a short
+notice like this when it starts in an interactive mode:
+
+    <program>  Copyright (C) <year>  <name of author>
+    This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+    This is free software, and you are welcome to redistribute it
+    under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License.  Of course, your program's commands
+might be different; for a GUI interface, you would use an "about box".
+
+  You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+<https://www.gnu.org/licenses/>.
+
+  The GNU General Public License does not permit incorporating your program
+into proprietary programs.  If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library.  If this is what you want to do, use the GNU Lesser General
+Public License instead of this License.  But first, please read
+<https://www.gnu.org/licenses/why-not-lgpl.html>.
diff --git a/recipes/tbtamr/meta.yaml b/recipes/tbtamr/meta.yaml
new file mode 100644
index 0000000000000..459fa16a643f1
--- /dev/null
+++ b/recipes/tbtamr/meta.yaml
@@ -0,0 +1,59 @@
+{% set name = "tbtamr" %}
+{% set version = "0.0.4" %}
+{% set sha256 = "72db1eb835574f02b0d7768e6b04e310bd2229d0f684100004b20a133eecd882" %}
+
+package:
+  name: "{{ name }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: "{{ sha256 }}"
+
+build:
+  noarch: python
+  number: 1
+  entry_points:
+    - tbtamr=tbtamr.tbtamr:main
+  run_exports:
+    - {{ pin_subpackage('tbtamr', max_pin="x.x") }}
+  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+
+requirements:
+  host:
+    - python >=3.8
+    - pip
+  run:
+    - python >=3.8
+    - psutil
+    - pandas
+    - csvtk
+    - bwa
+    - samtools =1.12
+    - snpeff =5.0
+    - samclip 
+    - freebayes 
+    - bcftools 
+    - bedtools 
+    - delly
+    - xlsxwriter
+    - requests
+    - tqdm
+
+    
+test:
+  imports:
+    - tbtamr
+  commands:
+    - tbtamr --help
+
+about:
+  home: "https://github.com/MDU-PHL/tbtamr"
+  license: GPL-3.0-or-later
+  license_file: LICENSE
+  license_family: "GPL3"
+  summary: "A tool implementing TB-Profiler for reporting of genomic DST for M. tuberculosis in a CPHL"
+
+extra:
+  recipe-maintainers:
+    - kristyhoran
diff --git a/recipes/tcdemux/meta.yaml b/recipes/tcdemux/meta.yaml
new file mode 100644
index 0000000000000..68c8d6e811719
--- /dev/null
+++ b/recipes/tcdemux/meta.yaml
@@ -0,0 +1,44 @@
+---
+{% set version = "0.0.25" %}
+
+package:
+  name: tcdemux
+  version: {{ version }}
+
+source:
+  url: https://github.com/TomHarrop/tcdemux/archive/refs/tags/{{ version }}.tar.gz
+  sha256: 03d8deea92762ad8ccc3fb3e2231cc00ec702efe52682c71fb8737f8317e819e
+
+build:
+  number: 1
+  noarch: python
+  script: {{ PYTHON }} -m pip install --ignore-installed .
+  run_exports:
+    - {{ pin_subpackage("tcdemux", max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.10
+  run:
+    - bbmap <=38.95
+    - biopython >=1.81
+    - cutadapt >=4.5
+    - pandas >=2.1.1
+    - pigz
+    - python >=3.10
+    - r-bit64 >=4.0.5
+    - r-data.table >=1.14.8
+    - r-ggplot2 >=3.4.3
+    - r-viridis >=0.6.4
+    - snakemake >=7.32.4
+
+test:
+  commands:
+    - "tcdemux --help | grep 'usage: tcdemux'"
+
+about:
+  home: https://github.com/TomHarrop/tcdemux
+  license: GPL-3
+  license_file: LICENSE
+  summary: >
+    Demultiplex files and prepare reads for the target capture analysis pipeline.
diff --git a/recipes/teloclip/meta.yaml b/recipes/teloclip/meta.yaml
index 90ad81721cf80..288843e270285 100644
--- a/recipes/teloclip/meta.yaml
+++ b/recipes/teloclip/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "teloclip" %}
-{% set version = "0.0.3" %}
+{% set version = "0.0.4" %}
 
 package:
   name: '{{ name|lower }}'
@@ -7,20 +7,24 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 48b25ce0a3dce9f44bc2703ccbcb9738861c260568a9ce1f3687c4aca054b14d
+  sha256: 7f9919c1aa5d3d9f8e21c3a49bc3edccb7d9ef1c4ad0686761a9a9f623999ade
 
 build:
+  run_exports:
+    - {{ pin_subpackage('teloclip', max_pin="x.x") }}
   noarch: python
-  number: 1
+  number: 0
   entry_points:
-    - teloclip=teloclip.run_self:main
-    - teloclip-extract=teloclip.run_extract:main
-  script: python setup.py install --single-version-externally-managed --record=record.txt
+    - teloclip=teloclip.app:main
+    - teloclip-extract=teloclip.app_extract:main
+  script: "{{ PYTHON }} -m pip install . -vv"
 
 requirements:
   host:
     - python >=3
+    - pip
     - setuptools
+    - setuptools-scm
   run:
     - python >=3
 
@@ -42,4 +46,5 @@ about:
   dev_url: ''
 
 extra:
-  recipe-maintainers: 'Adam Taranto'
+  recipe-maintainers: 
+    - 'Adamtaranto'
diff --git a/recipes/telometer/LICENSE.txt b/recipes/telometer/LICENSE.txt
new file mode 100644
index 0000000000000..84e9e4c0a691f
--- /dev/null
+++ b/recipes/telometer/LICENSE.txt
@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2023 santiago-es
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.
diff --git a/recipes/telometer/meta.yaml b/recipes/telometer/meta.yaml
new file mode 100644
index 0000000000000..9635ae5603af9
--- /dev/null
+++ b/recipes/telometer/meta.yaml
@@ -0,0 +1,48 @@
+{% set name = "telometer" %}
+{% set version = "0.5" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://test.pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: 6225b28342a8120ed2dc138cfc30c07f2c887b1ac996d27eeddee62544a37572
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - telometer=telometer:calculate_telomere_length
+  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv"
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
+
+
+requirements:
+  host:
+    - pip
+    - python
+  run:
+    - python
+    - pysam
+    - pandas
+
+test:
+  imports:
+    - telometer
+  commands:
+    - telometer --help
+
+about:
+  home: https://github.com/santiago-es/Telometer
+  license: MIT
+  license_file: LICENSE.txt
+  summary: "Tool for measuring telomeres from long-read data."
+  dev_url: https://github.com/santiago-es
+
+
+
+extra:
+  recipe-maintainers:
+    - santiago-es
diff --git a/recipes/terrace/build.sh b/recipes/terrace/build.sh
new file mode 100644
index 0000000000000..7a0d70011ef7a
--- /dev/null
+++ b/recipes/terrace/build.sh
@@ -0,0 +1,5 @@
+#!/bin/bash
+
+./configure --prefix=$PREFIX
+make LIBS+=-lhts
+make install
diff --git a/recipes/terrace/meta.yaml b/recipes/terrace/meta.yaml
new file mode 100644
index 0000000000000..6def5bd34e555
--- /dev/null
+++ b/recipes/terrace/meta.yaml
@@ -0,0 +1,41 @@
+{% set name = "terrace" %}
+{% set version = "1.1.2" %}
+
+package:
+  name: "{{ name }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://github.com/Shao-Group/TERRACE/releases/download/v{{ version }}/terrace-{{ version }}.tar.gz"
+  sha256: "cac4e9ae9ec61f49089c898f8c9484057ff16534fa1b12b02a5a06346dc56e8c"
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('terrace', max_pin="x") }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+  host:
+    - htslib
+    - boost-cpp
+  run:
+    - htslib
+    - boost-cpp
+
+test:
+  commands:
+    - terrace --help
+
+about:
+  home: "https://github.com/Shao-Group/TERRACE"
+  license: BSD-3-Clause
+  license_file: LICENSE
+  summary: "TERRACE is an assembler for circular RNAs."
+
+extra:
+  recipe-maintainers:
+    - shaomingfu
diff --git a/recipes/tesorter/build.sh b/recipes/tesorter/build.sh
index cce630af1d9c7..a32611cd6cc66 100644
--- a/recipes/tesorter/build.sh
+++ b/recipes/tesorter/build.sh
@@ -1,5 +1,5 @@
 #!/bin/bash
-$PYTHON -m pip install --no-deps --ignore-installed .
+$PYTHON -m pip install --no-deps --no-build-isolation --no-cache-dir . -vvv
 
 # hmmscan in TEsorter need hmmpress first
 # see here https://github.com/oushujun/EDTA/issues/121
diff --git a/recipes/tesorter/meta.yaml b/recipes/tesorter/meta.yaml
index f964508daebe8..5238bcacd6776 100644
--- a/recipes/tesorter/meta.yaml
+++ b/recipes/tesorter/meta.yaml
@@ -14,8 +14,11 @@ build:
   noarch: python
   entry_points:
     - TEsorter = TEsorter.app:main
-  number: 0
-
+    - TEsorter-test = TEsorter.test.test_app:main
+    - concatenate_domains.py = TEsorter.modules.concatenate_domains:main
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('tesorter', max_pin="x") }}
 
 requirements:
   host:
@@ -37,9 +40,14 @@ test:
     - "TEsorter-test"
 
 about:
-  home: https://github.com/zhangrengang/TEsorter
-  license: GPLv3
-  license_family: GPL
+  home: "https://github.com/zhangrengang/TEsorter"
+  license: "GPL-3.0-or-later"
+  license_family: GPL3
   license_file: LICENSE
   summary: Lineage-level classification of transposable elements using conserved protein domains.
-  dev_url: https://github.com/zhangrengang/TEsorter
+  dev_url: "https://github.com/zhangrengang/TEsorter"
+  doc_url: "https://github.com/zhangrengang/TEsorter/blob/master/README.md"
+
+extra:
+  identifiers:
+    - doi:10.1093/hr/uhac017
diff --git a/recipes/tf-comb/meta.yaml b/recipes/tf-comb/meta.yaml
new file mode 100644
index 0000000000000..032969cfb9cc0
--- /dev/null
+++ b/recipes/tf-comb/meta.yaml
@@ -0,0 +1,65 @@
+{% set name = "TF-COMB" %}
+{% set version = "1.1" %}
+{% set sha256 = "5b718061660e0f9f94d86459eb742ca81de5851b0defd8b08c8a7a7e3370c253" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  skip: True  # [py>=311 or py2k]
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('tf-comb', max_pin="x") }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+  host:
+    - python
+    - setuptools
+    - wheel
+    - cython
+    - numpy
+    - pip
+  run:
+    - python
+    - scipy
+    - pysam
+    - matplotlib-base >=2
+    - pandas
+    - tobias >=0.11
+    - networkx >=2.4
+    - python-louvain
+    - python-graphviz
+    - statsmodels
+    - goatools
+    - uropa
+    - qnorm
+    - dill
+    - seaborn
+    - tqdm
+    - ipython
+    - {{ pin_compatible('numpy') }}
+
+test:
+  imports:
+    - tfcomb
+
+about:
+  summary: "Transcription Factor Co-Occurrence using Market Basket analysis"
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  home: https://tf-comb.readthedocs.io/
+  doc_url: https://tf-comb.readthedocs.io/
+  dev_url: https://github.com/loosolab/TF-COMB/
+
+extra:
+  identifiers:
+    - doi:10.1016/j.csbj.2022.07.025
diff --git a/recipes/thapbi-pict/meta.yaml b/recipes/thapbi-pict/meta.yaml
index 4b9f6fe5429f8..6a3ccb82537e6 100644
--- a/recipes/thapbi-pict/meta.yaml
+++ b/recipes/thapbi-pict/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "thapbi-pict" %}
-{% set version = "1.0.1" %}
+{% set version = "1.0.13" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name | replace("-", "_") }}/{{ name | replace("-", "_") }}-{{ version }}.tar.gz
-  sha256: aa23cfbdb748eb931e17fa92f63145d7b5cdac44c86ff098aa00e04fd3c9683b
+  sha256: 772b10381901f9bbebc63588ae67c16676462393b8c9a5f886eab32ad13aa7ea
 
 build:
   noarch: python
@@ -15,22 +15,24 @@ build:
   entry_points:
     - thapbi_pict = thapbi_pict.__main__:main
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - python >=3.7
+    - python >=3.8
   run:
     # Python
     - biom-format >=2.1.14
-    - biopython >=1.73
+    - biopython >=1.82
     - cutadapt >=4.0
     - matplotlib-base >=3.7
     - networkx >=2.4,!=2.8.3,!=2.8.4
     - pydot
-    - python >=3.7
+    - python >=3.8
     - rapidfuzz >=2.4.0
-    - sqlalchemy
+    - sqlalchemy >=2.0
     - xlsxwriter
     # Command line
     - blast
diff --git a/recipes/thermorawfileparser/meta.yaml b/recipes/thermorawfileparser/meta.yaml
index 7559254a3ee3e..13b3928df5f63 100644
--- a/recipes/thermorawfileparser/meta.yaml
+++ b/recipes/thermorawfileparser/meta.yaml
@@ -1,11 +1,13 @@
 {% set name = "ThermoRawFileParser" %}
-{% set version = "1.4.2" %}
+{% set version = "1.4.4" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 build:
+  run_exports:
+    - {{ pin_subpackage('thermorawfileparser', max_pin="x.x.x") }}
   number: 0
   noarch: generic
   script:
@@ -17,9 +19,9 @@ build:
     - ln -s $PREFIX/bin/ThermoRawFileParser.sh $PREFIX/bin/thermorawfileparser
 
 source:
-  # downloading pre-compiled packages, msbuild is a hell to compile unter Linux
+  # downloading pre-compiled packages, msbuild is a hell to compile under Linux
   url: https://github.com/compomics/ThermoRawFileParser/releases/download/v{{ version }}/ThermoRawFileParser{{ version }}.zip
-  sha256: 2a8ef05a954f6dd2ffb6181a9bdb0b9fb0e05a949822c3f8b780b9425fcd5d49
+  sha256: 5fff9266636422557095b5eea0a18b26f5a9972f49a538d93cb969a6b239a044
 
 requirements:
   build:
diff --git a/recipes/tides-ml/meta.yaml b/recipes/tides-ml/meta.yaml
new file mode 100644
index 0000000000000..75f14a4175336
--- /dev/null
+++ b/recipes/tides-ml/meta.yaml
@@ -0,0 +1,57 @@
+{% set name = "tides-ml" %}
+{% set version = "1.2.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/TIdeS-ML-{{ version }}.tar.gz
+  sha256: 8c31f4429303e5d34c031b243963fae3eec1f0d9c97e856949a7eac17f82452c
+
+build:
+  entry_points:
+    - tides = tides.tides:main
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  host:
+    - python <3.12
+    - pip
+  run:
+    - python <3.12
+    - biopython >=1.79
+    - ete3 >=3.1.2
+    - optuna >=3.0
+    - pandas >=2.0
+    - seaborn >=0.12.2
+    - scikit-learn >=1.3.0
+    - diamond >=2.1.3
+    - cd-hit >=4.8.1
+    - barrnap >=0.9
+    - kraken2 >=2.0.0
+
+test:
+  imports:
+    - tides
+  commands:
+    - cd-hit --help | grep 'Usage' > /dev/null
+    - diamond --help 2>&1 > /dev/null
+    - (barrnap --help 2>&1; true) | grep -q Options
+    - tides --help
+    - kraken2 --version
+
+about:
+  home: https://github.com/xxmalcala/TIdeS
+  summary: Tool for ORF-calling and ORF-classification using ML approaches
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - xxmalcala
diff --git a/recipes/tidk/meta.yaml b/recipes/tidk/meta.yaml
index aa7f115b33c8e..6d4db203c6073 100644
--- a/recipes/tidk/meta.yaml
+++ b/recipes/tidk/meta.yaml
@@ -1,15 +1,17 @@
-{% set version = "0.2.31" %}
+{% set version = "0.2.41" %}
 
 package:
   name: tidk
   version: {{ version }}
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('tidk', max_pin="x.x") }}
 
 source:
   url: https://github.com/tolkit/telomeric-identifier/archive/{{ version }}.tar.gz
-  sha256: a3cd376a312a3d93d57fc57394a6b17b19755c86624a92b9a6912a125e803d5b
+  sha256: 28cac3506d66ffc7ee37ff48a429663dde68aa23ba5d9b28ee0a6656aeea03d4
 
 requirements:
   build:
@@ -18,10 +20,7 @@ requirements:
     - cmake
     - make
     - rust >=1.52
-    - pkg-config # [osx]
-  host:
-  run:
-    
+    - pkg-config  # [osx]
 
 test:
   commands:
@@ -31,5 +30,6 @@ test:
 about:
   home: https://github.com/tolkit/telomeric-identifier
   license: MIT
+  license_family: MIT
   summary: |
     Identify and find telomeres, or telomeric repeats in a genome.
diff --git a/recipes/tidyp/build.sh b/recipes/tidyp/build.sh
index 6e31603e6254a..591e6774ea67f 100644
--- a/recipes/tidyp/build.sh
+++ b/recipes/tidyp/build.sh
@@ -1,7 +1,14 @@
 #!/bin/bash
 
+set -xe
 
+mkdir -p ${HOME}/bin
+export PATH="${HOME}/bin:$PATH"
+ln -s ${CC} ${HOME}/bin/gcc
 
-./configure --prefix="$PREFIX"
+pushd build/gmake
 make
-make install
+popd
+
+mkdir -p ${PREFIX}/bin
+cp ./bin/tidyp ${PREFIX}/bin
diff --git a/recipes/tidyp/build_failure.linux-64.yaml b/recipes/tidyp/build_failure.linux-64.yaml
deleted file mode 100644
index f3772fe0477fb..0000000000000
--- a/recipes/tidyp/build_failure.linux-64.yaml
+++ /dev/null
@@ -1,104 +0,0 @@
-recipe_sha: 5f54a99372501e5b639643248f525296d6bb59524021c5ff02d871c634b5787a  # The commit at which this recipe failed to build.
-skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
-log: |2-
-
-    environment location: /opt/conda/conda-bld/tidyp_1685392106059/_build_env
-
-
-  The following NEW packages will be INSTALLED:
-
-      _libgcc_mutex:           0.1-conda_forge    conda-forge
-      _openmp_mutex:           4.5-2_gnu          conda-forge
-      binutils_impl_linux-64:  2.39-he00db2b_1    conda-forge
-      binutils_linux-64:       2.39-h5fc0e48_13   conda-forge
-      gcc_impl_linux-64:       12.2.0-hcc96c02_19 conda-forge
-      gcc_linux-64:            12.2.0-h4798a0e_13 conda-forge
-      kernel-headers_linux-64: 2.6.32-he073ed8_15 conda-forge
-      ld_impl_linux-64:        2.39-hcc3a1bd_1    conda-forge
-      libgcc-devel_linux-64:   12.2.0-h3b97bd3_19 conda-forge
-      libgcc-ng:               12.2.0-h65d4601_19 conda-forge
-      libgomp:                 12.2.0-h65d4601_19 conda-forge
-      libsanitizer:            12.2.0-h46fd767_19 conda-forge
-      libstdcxx-ng:            12.2.0-h46fd767_19 conda-forge
-      make:                    4.3-hd18ef5c_1     conda-forge
-      sysroot_linux-64:        2.12-he073ed8_15   conda-forge
-
-  Preparing transaction: ...working... done
-  Verifying transaction: ...working... done
-  Executing transaction: ...working... done
-  Source cache directory is: /opt/conda/conda-bld/src_cache
-  INFO:conda_build.source:Source cache directory is: /opt/conda/conda-bld/src_cache
-  Downloading source to cache: 1.04_5f09650411.tar.gz
-  INFO:conda_build.source:Downloading source to cache: 1.04_5f09650411.tar.gz
-  Downloading https://github.com/petdance/tidyp/archive/refs/tags/1.04.tar.gz
-  INFO:conda_build.source:Downloading https://github.com/petdance/tidyp/archive/refs/tags/1.04.tar.gz
-  Success
-  INFO:conda_build.source:Success
-  Extracting download
-  source tree in: /opt/conda/conda-bld/tidyp_1685392106059/work
-  export PREFIX=/opt/conda/conda-bld/tidyp_1685392106059/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho
-  export BUILD_PREFIX=/opt/conda/conda-bld/tidyp_1685392106059/_build_env
-  export SRC_DIR=/opt/conda/conda-bld/tidyp_1685392106059/work
-  INFO: activate-binutils_linux-64.sh made the following environmental changes:
-  ADDR2LINE=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-addr2line
-  AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ar
-  AS=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-as
-  CXXFILT=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cfilt
-  ELFEDIT=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-elfedit
-  GPROF=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gprof
-  LD=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ld
-  LD_GOLD=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ld.gold
-  NM=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-nm
-  OBJCOPY=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-objcopy
-  OBJDUMP=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-objdump
-  RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ranlib
-  READELF=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-readelf
-  SIZE=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-size
-  STRINGS=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-strings
-  STRIP=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-strip
-  INFO: activate-gcc_linux-64.sh made the following environmental changes:
-  BUILD=x86_64-conda-linux-gnu
-  CC=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc
-  CC_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cc
-  CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/tidyp-1.04 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
-  CMAKE_ARGS=-DCMAKE_AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ar -DCMAKE_CXX_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ar -DCMAKE_C_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ar -DCMAKE_RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ranlib -DCMAKE_CXX_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ranlib -DCMAKE_C_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ranlib -DCMAKE_LINKER=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-ld -DCMAKE_STRIP=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-strip -DCMAKE_FIND_ROOT_PATH_MODE_PROGRAM=NEVER -DCMAKE_FIND_ROOT_PATH_MODE_LIBRARY=ONLY -DCMAKE_FIND_ROOT_PATH_MODE_INCLUDE=ONLY -DCMAKE_FIND_ROOT_PATH=$PREFIX;$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot -DCMAKE_INSTALL_PREFIX=$PREFIX -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_PROGRAM_PATH=$BUILD_PREFIX/bin;$PREFIX/bin
-  CMAKE_PREFIX_PATH=$PREFIX:$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr
-  CONDA_BUILD_SYSROOT=$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot
-  CONDA_TOOLCHAIN_BUILD=x86_64-conda-linux-gnu
-  CONDA_TOOLCHAIN_HOST=x86_64-conda-linux-gnu
-  CPP=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cpp
-  CPPFLAGS=-DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include
-  DEBUG_CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/tidyp-1.04 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
-  DEBUG_CPPFLAGS=-D_DEBUG -D_FORTIFY_SOURCE=2 -Og -isystem $PREFIX/include
-  GCC=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc
-  GCC_AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ar
-  GCC_NM=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-nm
-  GCC_RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ranlib
-  HOST=x86_64-conda-linux-gnu
-  LDFLAGS=-Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,$PREFIX/lib -Wl,-rpath-link,$PREFIX/lib -L$PREFIX/lib
-  MESON_ARGS=--buildtype release --prefix=$PREFIX -Dlibdir=lib
-  _CONDA_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_conda_cos6_linux_gnu
-  build_alias=x86_64-conda-linux-gnu
-  host_alias=x86_64-conda-linux-gnu
-  -BUILD=x86_64-conda_cos6-linux-gnu
-  -CONDA_BUILD_SYSROOT=
-  /opt/conda/conda-bld/tidyp_1685392106059/work/conda_build.sh: line 8: ./configure: No such file or directory
-  Traceback (most recent call last):
-    File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
-      sys.exit(main())
-    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
-      call_conda_build(action, config)
-    File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
-      result = api.build(
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
-      return build_tree(
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
-      packages_from_this = build(metadata, stats,
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
-      utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
-      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
-    File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
-      raise subprocess.CalledProcessError(proc.returncode, _args)
-  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/tidyp_1685392106059/work/conda_build.sh']' returned non-zero exit status 1.
-# Last 100 lines of the build log.
diff --git a/recipes/tidyp/build_failure.osx-64.yaml b/recipes/tidyp/build_failure.osx-64.yaml
deleted file mode 100644
index 030a7aa9ec7f5..0000000000000
--- a/recipes/tidyp/build_failure.osx-64.yaml
+++ /dev/null
@@ -1,104 +0,0 @@
-recipe_sha: 5f54a99372501e5b639643248f525296d6bb59524021c5ff02d871c634b5787a  # The commit at which this recipe failed to build.
-skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
-log: |2-
-      cctools_osx-64:     973.0.1-h48a5a9d_13       conda-forge
-      clang:              15.0.7-h694c41f_2         conda-forge
-      clang-15:           15.0.7-default_hdb78580_2 conda-forge
-      clang_osx-64:       15.0.7-h03d6864_3         conda-forge
-      clangxx:            15.0.7-default_hdb78580_2 conda-forge
-      compiler-rt:        15.0.7-he1888fc_1         conda-forge
-      compiler-rt_osx-64: 15.0.7-he1888fc_1         conda-forge
-      icu:                72.1-h7336db1_0           conda-forge
-      ld64_osx-64:        609-h8ce0179_13           conda-forge
-      libclang-cpp15:     15.0.7-default_hdb78580_2 conda-forge
-      libcxx:             16.0.4-hd57cbcb_0         conda-forge
-      libiconv:           1.17-hac89ed1_0           conda-forge
-      libllvm15:          15.0.7-he4b1e75_2         conda-forge
-      libxml2:            2.11.4-hd95e348_0         conda-forge
-      libzlib:            1.2.13-hfd90126_4         conda-forge
-      llvm-tools:         15.0.7-he4b1e75_2         conda-forge
-      make:               4.3-h22f3db7_1            conda-forge
-      openssl:            3.1.0-h8a1eda9_3          conda-forge
-      sigtool:            0.1.3-h88f4db0_0          conda-forge
-      tapi:               1100.0.11-h9ce4665_0      conda-forge
-      xz:                 5.2.6-h775f41a_0          conda-forge
-      zstd:               1.5.2-hbc0c0cd_6          conda-forge
-
-  Preparing transaction: ...working... done
-  Verifying transaction: ...working... done
-  Executing transaction: ...working... done
-  Source cache directory is: /opt/mambaforge/envs/bioconda/conda-bld/src_cache
-  INFO:conda_build.source:Source cache directory is: /opt/mambaforge/envs/bioconda/conda-bld/src_cache
-  INFO:conda_build.source:Downloading source to cache: 1.04_5f09650411.tar.gz
-  INFO:conda_build.source:Downloading https://github.com/petdance/tidyp/archive/refs/tags/1.04.tar.gz
-  Downloading source to cache: 1.04_5f09650411.tar.gz
-  Downloading https://github.com/petdance/tidyp/archive/refs/tags/1.04.tar.gz
-  Success
-  INFO:conda_build.source:Success
-  Extracting download
-  source tree in: /opt/mambaforge/envs/bioconda/conda-bld/tidyp_1685382282834/work
-  export PREFIX=/opt/mambaforge/envs/bioconda/conda-bld/tidyp_1685382282834/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol
-  export BUILD_PREFIX=/opt/mambaforge/envs/bioconda/conda-bld/tidyp_1685382282834/_build_env
-  export SRC_DIR=/opt/mambaforge/envs/bioconda/conda-bld/tidyp_1685382282834/work
-  INFO: activate_clang_osx-64.sh made the following environmental changes:
-  AR=x86_64-apple-darwin13.4.0-ar
-  AS=x86_64-apple-darwin13.4.0-as
-  CC=x86_64-apple-darwin13.4.0-clang
-  CC_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang
-  CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/tidyp-1.04 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
-  CHECKSYMS=x86_64-apple-darwin13.4.0-checksyms
-  CLANG=x86_64-apple-darwin13.4.0-clang
-  CMAKE_ARGS=-DCMAKE_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_CXX_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_C_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_CXX_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_C_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_LINKER=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ld -DCMAKE_STRIP=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-strip -DCMAKE_INSTALL_NAME_TOOL=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-install_name_tool -DCMAKE_LIBTOOL=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-libtool -DCMAKE_OSX_DEPLOYMENT_TARGET=10.9 -DCMAKE_BUILD_TYPE=Release -DCMAKE_OSX_SYSROOT=/Applications/Xcode_14.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_FIND_APPBUNDLE=LAST -DCMAKE_INSTALL_PREFIX=$PREFIX -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_PROGRAM_PATH=$BUILD_PREFIX/bin;$PREFIX/bin
-  CMAKE_PREFIX_PATH=:$PREFIX
-  CONDA_TOOLCHAIN_BUILD=x86_64-apple-darwin13.4.0
-  CONDA_TOOLCHAIN_HOST=x86_64-apple-darwin13.4.0
-  CPPFLAGS=-D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.9
-  DEBUG_CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -Og -g -Wall -Wextra -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/tidyp-1.04 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
-  HOST=x86_64-apple-darwin13.4.0
-  INSTALL_NAME_TOOL=x86_64-apple-darwin13.4.0-install_name_tool
-  LD=x86_64-apple-darwin13.4.0-ld
-  LDFLAGS=-Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,$PREFIX/lib -L$PREFIX/lib
-  LDFLAGS_LD=-pie -headerpad_max_install_names -dead_strip_dylibs -rpath $PREFIX/lib -L$PREFIX/lib
-  LIBTOOL=x86_64-apple-darwin13.4.0-libtool
-  LIPO=x86_64-apple-darwin13.4.0-lipo
-  MESON_ARGS=--buildtype release --prefix=$PREFIX -Dlibdir=lib
-  NM=x86_64-apple-darwin13.4.0-nm
-  NMEDIT=x86_64-apple-darwin13.4.0-nmedit
-  OBJC=x86_64-apple-darwin13.4.0-clang
-  OBJC_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang
-  OTOOL=x86_64-apple-darwin13.4.0-otool
-  PAGESTUFF=x86_64-apple-darwin13.4.0-pagestuff
-  RANLIB=x86_64-apple-darwin13.4.0-ranlib
-  REDO_PREBINDING=x86_64-apple-darwin13.4.0-redo_prebinding
-  SDKROOT=/Applications/Xcode_14.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk
-  SEGEDIT=x86_64-apple-darwin13.4.0-segedit
-  SEG_ADDR_TABLE=x86_64-apple-darwin13.4.0-seg_addr_table
-  SEG_HACK=x86_64-apple-darwin13.4.0-seg_hack
-  SIZE=x86_64-apple-darwin13.4.0-size
-  STRINGS=x86_64-apple-darwin13.4.0-strings
-  STRIP=x86_64-apple-darwin13.4.0-strip
-  _CONDA_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_apple_darwin13_4_0
-  ac_cv_func_malloc_0_nonnull=yes
-  ac_cv_func_realloc_0_nonnull=yes
-  build_alias=x86_64-apple-darwin13.4.0
-  host_alias=x86_64-apple-darwin13.4.0
-  /opt/mambaforge/envs/bioconda/conda-bld/tidyp_1685382282834/work/conda_build.sh: line 8: ./configure: No such file or directory
-  Traceback (most recent call last):
-    File "/opt/mambaforge/envs/bioconda/bin/conda-mambabuild", line 10, in <module>
-      sys.exit(main())
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 256, in main
-      call_conda_build(action, config)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
-      result = api.build(
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/api.py", line 180, in build
-      return build_tree(
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 3078, in build_tree
-      packages_from_this = build(metadata, stats,
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/build.py", line 2198, in build
-      utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 451, in check_call_env
-      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
-    File "/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
-      raise subprocess.CalledProcessError(proc.returncode, _args)
-  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/mambaforge/envs/bioconda/conda-bld/tidyp_1685382282834/work/conda_build.sh']' returned non-zero exit status 1.
-# Last 100 lines of the build log.
diff --git a/recipes/tidyp/meta.yaml b/recipes/tidyp/meta.yaml
index e95b0d8d7be46..0ff496e43703c 100644
--- a/recipes/tidyp/meta.yaml
+++ b/recipes/tidyp/meta.yaml
@@ -7,7 +7,9 @@ source:
   sha256: 5f0965041119bed0ed70a7f0be39e8f0162141eea14d77f472b49f8b3303ab0b
 
 build:
-  number: 5
+  number: 6
+  run_exports:
+    - {{ pin_subpackage('tidyp', max_pin="x") }}
 
 requirements:
   build:
@@ -20,5 +22,7 @@ about:
   summary: "Program for cleaning up and validating HTML"
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   skip-lints:
     - missing_tests
diff --git a/recipes/tinyalign/meta.yaml b/recipes/tinyalign/meta.yaml
index 24a289e09a3e4..2f93e3baeabb8 100644
--- a/recipes/tinyalign/meta.yaml
+++ b/recipes/tinyalign/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.2.1" %}
+{% set version = "0.2.2" %}
 
 package:
   name: tinyalign
@@ -6,12 +6,14 @@ package:
 
 source:
   url: https://pypi.io/packages/source/t/tinyalign/tinyalign-{{ version }}.tar.gz
-  sha256: 8e7db5564d6a2caa6646c7057aee20cf74bb47a474ed4ec77c9af6dddc75df8f
+  sha256: 9c6dc91ae4a886ab9369a106115add04c71fb62b45f706247d494e43ccf7a588
 
 build:
-  number: 5
+  number: 0
   script: "{{ PYTHON }} -m pip install . --no-deps -vv"
   skip: True  # [py < 37]
+  run_exports:
+    - {{ pin_subpackage('tinyalign', max_pin="x") }}
 
 requirements:
   build:
diff --git a/recipes/tir-learner/build.sh b/recipes/tir-learner/build.sh
new file mode 100644
index 0000000000000..0855b1275d676
--- /dev/null
+++ b/recipes/tir-learner/build.sh
@@ -0,0 +1,15 @@
+#!/bin/sh
+set -x -e
+
+TIR_LEARNER_DIR=${PREFIX}/share/TIR-Learner3.0
+
+mkdir -p ${PREFIX}/bin
+mkdir -p ${TIR_LEARNER_DIR}
+cp -r TIR-Learner3.0/* ${TIR_LEARNER_DIR}
+
+cat <<END >>${PREFIX}/bin/TIR-Learner
+#!/bin/bash
+python3 ${TIR_LEARNER_DIR}/TIR-Learner3.0.py \$@
+END
+
+chmod a+x ${PREFIX}/bin/TIR-Learner
diff --git a/recipes/tir-learner/meta.yaml b/recipes/tir-learner/meta.yaml
new file mode 100644
index 0000000000000..f1e308ce75f47
--- /dev/null
+++ b/recipes/tir-learner/meta.yaml
@@ -0,0 +1,49 @@
+{% set name = "TIR-Learner" %}
+{% set version = "3.0.1" %}
+{% set sha256 = "a5b8e41a0ff6cb18188e78722ade9dccab2b947cb9c23d21543ccbf2b05285f5" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://github.com/lutianyu2001/TIR-Learner/archive/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage('tir-learner', max_pin='x') }}
+
+requirements:
+  run:
+    - genericrepeatfinder
+    - genometools-genometools
+    - blast
+    - biopython
+    - scikit-learn
+    - pandas
+    - glob2
+    - multiprocess
+    - regex
+    - tensorflow
+    - keras
+    - swifter
+
+test:
+  commands:
+    - TIR-Learner -v | grep 'TIR-Learner 3.0.1'
+
+about:
+  home: https://github.com/lutianyu2001/TIR-Learner
+  license: GPLv3
+  license_family: GPL
+  license_file: LICENSE
+  summary: An ensemble method for TIR transposable element annotation
+  dev_url: https://github.com/lutianyu2001/TIR-Learner
+  doc_url: https://github.com/lutianyu2001/TIR-Learner/blob/main/docs/TIR-Learner%20v3%20flow%20chart_v2.drawio.png
+
+extra:
+  identifiers:
+    - doi:10.1016/j.molp.2019.02.008
diff --git a/recipes/tissuumaps/meta.yaml b/recipes/tissuumaps/meta.yaml
new file mode 100644
index 0000000000000..d3b5a1c418492
--- /dev/null
+++ b/recipes/tissuumaps/meta.yaml
@@ -0,0 +1,53 @@
+# As soon as PyQt6 is available as a Conda package, this recipe can be
+# updated as follows:
+# - use "pip install .[full]"
+# - add pyqt6 (or possibly pyqt>=6) dependency
+# Until then, only the "tissuumaps_server" script is available, not "tissuumaps"
+
+{% set version = "3.2.1.9" %}
+
+package:
+  name: tissuumaps
+  version: {{ version }}
+
+source:
+  url: https://github.com/TissUUmaps/TissUUmaps/archive/refs/tags/{{ version }}.tar.gz
+  sha256: cd859ae51d14d243dd9c3000d5aa5e9e9a6920643b7b5eafdaedbc88d5214a4d
+
+build:
+  number: 0
+  script: "{{ PYTHON }} -m pip install --no-deps -vv ."
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage("tissuumaps", max_pin="x") }}
+
+requirements:
+  host:
+    - pip
+    - python
+  run:
+    - python
+    - flask >=2
+    - openslide-python >=1.1.2
+    - pillow >=8.2.0
+    - ipython >=7.0
+    - pyyaml >=6.0
+    - h5py >=3.6.0
+    - scipy >=1.7.2
+    - pyvips
+
+test:
+  commands:
+    - "tissuumaps_server --help 2>&1 > /dev/null | grep 'version: {{ version }}'"
+
+about:
+  home: https://tissuumaps.research.it.uu.se/
+  license: MIT
+  license_file: LICENSE
+  summary: >
+    TissUUmaps is a lightweight viewer that uses basic web tools to visualize
+    gene expression data or any kind of point data on top of whole slide images
+
+extra:
+  identifiers:
+    - doi:10.1101/2022.01.28.478131
diff --git a/recipes/tksm/meta.yaml b/recipes/tksm/meta.yaml
index 1d3bc532de1b6..f1d6d883e248a 100644
--- a/recipes/tksm/meta.yaml
+++ b/recipes/tksm/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.3.2" %}
-{% set sha256 = "e965a8e932698570b6bc7c2ea15ebecaf7e0a50985c26cf87ece7869eaf44c83" %}
+{% set version = "0.6.1" %}
+{% set sha256 = "20a206258ea778c73d94645596fb484723382adeb5b66a8d6ae0f2379603b993" %}
 
 package:
   name: tksm
@@ -11,23 +11,26 @@ source:
 
 build:
   number: 0
-  skip: True  # [py<3.8 or osx]
+  skip: True  # [py < 3.8 or osx]
+  run_exports:
+    - {{ pin_subpackage('tksm', max_pin="x.x") }}
 
 requirements:
   build:
+    - python
     - {{ compiler('cxx') }}
-    - python {{ python }}
-    - zlib
     - make
     - vim
     - lld
+    - nlohmann_json
   host:
-    - python {{ python }}
+    - python
     - zlib
+    - nlohmann_json
     - cxxopts >=3.1.0
     - fmt >=9.1.0
   run:
-    - python {{ python }}
+    - python
     - zlib
     - python-edlib
     - numpy
@@ -37,11 +40,14 @@ requirements:
 
 test:
   commands:
+    - tksm list
     - tksm sequence --help
-
+    - tksm abundance --help
+    - tksm model-truncation --help
 
 about:
   home: https://github.com/vpc-ccg/tksm
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary: Very modular, very cool long-read transcriptomic simulator
diff --git a/recipes/tmhg/meta.yaml b/recipes/tmhg/meta.yaml
new file mode 100644
index 0000000000000..39414bccf2f77
--- /dev/null
+++ b/recipes/tmhg/meta.yaml
@@ -0,0 +1,44 @@
+{% set name = "tmhg" %}
+{% set version = "1.0.1" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: 'https://github.com/yongze-yin/tMHG-Finder/archive/refs/tags/v{{version}}.tar.gz'
+  sha256: a05df84ca80674154cb78f63148e26f023b88af26fa95cc2fa54e34f105efcac
+
+build:
+  run_exports:
+    - {{ pin_subpackage('tmhg', max_pin="x") }}
+  noarch: generic
+  number: 0
+  script: "{{ PYTHON }} -m pip install ."
+
+requirements:
+  host:
+    - python >=3.6
+  run:
+    - biopython
+    - blast
+    - dendropy
+    - numpy >=1.11
+    - pandas >=1.1.3
+    - networkx
+    - biopython
+    - bedtools >=2.31.1
+    - pathos
+    - mash
+    - mafft
+
+test:
+  commands:
+    - tmhgf find --help 
+    - tmhgf add --help
+
+about:
+  home: https://github.com/yongze-yin/tMHG-Finder/
+  license: MIT
+  summary: tMHG-Finder is a tree-guided tool to partition whole genomes into maximal homologous groups.
+
diff --git a/recipes/tn93/meta.yaml b/recipes/tn93/meta.yaml
index 1cf70e3eadd75..4c2f9e895ef64 100644
--- a/recipes/tn93/meta.yaml
+++ b/recipes/tn93/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.0.9" %}
+{% set version = "1.0.14" %}
 
 package:
   name: tn93
@@ -6,10 +6,12 @@ package:
 
 source:
   url: https://github.com/veg/tn93/archive/v{{ version }}.tar.gz
-  sha256: de22038b3a0129a6a8f72bff300bb349c815d530566de8cd15febc1e73cf7768
+  sha256: 0cdd456070a7103cf264a96e2228611bd1188161dec2666e0896bcd655c40f38
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('tn93', max_pin="x") }}
 
 requirements:
   build:
@@ -19,8 +21,6 @@ requirements:
     - llvm-openmp  # [osx]
     - libgomp      # [linux]
     - cmake
-  host:
-  run:
 
 test:
   commands:
@@ -29,5 +29,11 @@ test:
 about:
   home: https://github.com/veg/tn93
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary: This is a simple program meant to compute pairwise distances between aligned nucleotide sequences in sequential FASTA format using the Tamura Nei 93 distance.
+
+extra:
+  identifiers:
+    - biotools:tn93
+    - doi:10.1093/molbev/msy016
diff --git a/recipes/tntblast/2.4/build.sh b/recipes/tntblast/2.4/build.sh
new file mode 100644
index 0000000000000..9faf1b0cc953d
--- /dev/null
+++ b/recipes/tntblast/2.4/build.sh
@@ -0,0 +1,16 @@
+#!/bin/bash
+
+sed -i.bak 's/-DUSE_MPI//g' Makefile
+sed -i.bak '/BLAST_DIR =/d' Makefile
+
+export INCLUDE_PATH="${BUILD_PREFIX}/include"
+export LIBRARY_PATH="${BUILD_PREFIX}/lib"
+export LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:${BUILD_PREFIX}/lib"
+
+export LDFLAGS="-lm -lz -L${BUILD_PREFIX}/lib"
+export CPPFLAGS="-I${BUILD_PREFIX}/include"
+
+make CC="${CXX}" INC="${CPPFLAGS}" LIBS="${LDFLAGS}" all
+
+mkdir -p $PREFIX/bin
+cp tntblast $PREFIX/bin
diff --git a/recipes/tntblast/2.4/meta.yaml b/recipes/tntblast/2.4/meta.yaml
new file mode 100644
index 0000000000000..c4f641810f439
--- /dev/null
+++ b/recipes/tntblast/2.4/meta.yaml
@@ -0,0 +1,48 @@
+{% set name = "tntblast" %}
+{% set version = "2.4" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage( name|lower, max_pin="x") }}
+
+source:
+  url: https://github.com/jgans/thermonucleotideBLAST/archive/61fee4458186cc3f08ec386e18997b5953d5c7e6.zip
+  sha256: 5a239413a2df7de59d9a28a1bee962e2480b81d5faed3ecfa1e0f9fd84294c0c
+
+requirements:
+  build:
+    - make
+    - {{ compiler('cxx') }}
+    - openmp       #[linux]
+    - llvm-openmp  #[osx]
+    - zlib
+  host:
+    - openmp       #[linux]
+    - llvm-openmp  #[osx]
+    - zlib
+  run:
+    - openmp       #[linux]
+    - llvm-openmp  #[osx]
+    - zlib
+
+test:
+  commands:
+    - '{ tntblast 2>&1 || true; } | grep v.{{ version }}'
+
+about:
+  home: https://github.com/jgans/thermonucleotideBLAST
+  license: BSD License
+  license_file: LICENSE
+  license_family: BSD
+  summary: Searching DNA/RNA sequence databases with PCR and/or probe queries
+  dev_url: https://github.com/jgans/thermonucleotideBLAST
+  doc_url: https://github.com/jgans/thermonucleotideBLAST#readme
+
+extra:
+  identifiers:
+    - doi:10.1093/nar/gkn301
diff --git a/recipes/tntblast/build.sh b/recipes/tntblast/build.sh
new file mode 100644
index 0000000000000..31f9a2bcebb87
--- /dev/null
+++ b/recipes/tntblast/build.sh
@@ -0,0 +1,17 @@
+#!/bin/bash
+
+sed -i.bak '/BLAST_DIR =/d' Makefile
+
+export INCLUDE_PATH="${BUILD_PREFIX}/include"
+export LIBRARY_PATH="${BUILD_PREFIX}/lib"
+export LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:${BUILD_PREFIX}/lib"
+
+export LDFLAGS="-lm -lz -L${BUILD_PREFIX}/lib"
+export CPPFLAGS="-I${BUILD_PREFIX}/include"
+
+export CXX="${BUILD_PREFIX}/bin/mpicxx"
+
+make CC="${CXX}" INC="${CPPFLAGS}" LIBS="${LDFLAGS}" all
+
+mkdir -p $PREFIX/bin
+cp tntblast $PREFIX/bin
diff --git a/recipes/tntblast/meta.yaml b/recipes/tntblast/meta.yaml
new file mode 100644
index 0000000000000..e10695d06f338
--- /dev/null
+++ b/recipes/tntblast/meta.yaml
@@ -0,0 +1,51 @@
+{% set name = "tntblast" %}
+{% set version = "2.66" %}
+ 
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage( name|lower, max_pin="x") }}
+
+source:
+  url: https://github.com/jgans/thermonucleotideBLAST/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 46f4ea4a1a8c3fe1a659cd54da847fd66c6a588d643d90be814412078b92da9e
+
+requirements:
+  build:
+    - make
+    - {{ compiler('cxx') }}
+    - mpich
+    - openmp       #[linux]
+    - llvm-openmp  #[osx]
+    - zlib
+  host:
+    - openmp       #[linux]
+    - llvm-openmp  #[osx]
+    - mpich
+    - zlib
+  run:
+    - openmp       #[linux]
+    - llvm-openmp  #[osx]
+    - mpich
+    - zlib
+
+test:
+  commands:
+    - '{ tntblast 2>&1 || true; } | grep v.{{ version }}'
+
+about:
+  home: https://github.com/jgans/thermonucleotideBLAST
+  license: BSD License
+  license_file: LICENSE
+  license_family: BSD
+  summary: Searching DNA/RNA sequence databases with PCR and/or probe queries
+  dev_url: https://github.com/jgans/thermonucleotideBLAST
+  doc_url: https://github.com/jgans/thermonucleotideBLAST#readme
+
+extra:
+  identifiers:
+    - doi:10.1093/nar/gkn301
diff --git a/recipes/tobias/meta.yaml b/recipes/tobias/meta.yaml
index 8442fbfc99e50..f2c9e5143b87b 100644
--- a/recipes/tobias/meta.yaml
+++ b/recipes/tobias/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "TOBIAS" %}
-{% set version = "0.15.1" %}
-{% set sha256 = "751416e72ea9fd0c7b857a586dc32be981370abdd8b8e6a925671041ced3b104" %}
+{% set version = "0.16.1" %}
+{% set sha256 = "c46267c01287be06201b3e6f7a36daad1ad86d6c578f96e878501be7da7fd109" %}
 
 package:
   name: {{ name|lower }}
@@ -13,9 +13,11 @@ source:
 build:
   number: 0
   skip: True  # [py < 37]
-  script: {{ PYTHON }} -m pip install . --use-pep517 --no-deps -vv
+  script: {{ PYTHON }} -m pip install . --use-pep517 --no-deps --no-build-isolation -vvv
   entry_points:
     - TOBIAS=tobias.TOBIAS:main
+  run_exports:
+    - {{ pin_subpackage('tobias', max_pin="x.x") }}
 
 requirements:
   build:
@@ -58,6 +60,7 @@ about:
   home: 'https://github.com/loosolab/TOBIAS'
   summary: 'Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal'
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   doc_url: 'https://github.com/loosolab/TOBIAS/wiki'
   dev_url: 'https://pypi.org/project/tobias/'
diff --git a/recipes/toil/meta.yaml b/recipes/toil/meta.yaml
index 6baaf6c98595c..8b0e7b731b283 100644
--- a/recipes/toil/meta.yaml
+++ b/recipes/toil/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "toil" %}
-{% set version = "5.12.0" %}
-{% set sha256 = "fb21c85b8654b0e628087ebd403fa5f53644d86a33a4c1e039ba5769dcaf6654" %}
+{% set version = "7.0.0" %}
+{% set sha256 = "c3f4e9567754f5ad6fe56b90913b7c1c9aaade32b545502a483cd57f70f24777" %}
 
 package:
   name: {{ name|lower }}
@@ -13,35 +13,37 @@ source:
 build:
   number: 0
   noarch: python
-  script: {{ PYTHON }} -m pip install . --use-pep517 --no-deps -vvv
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
   entry_points:
     - toil = toil.utils.toilMain:main
     - _toil_worker = toil.worker:main
     - toil-cwl-runner = toil.cwl.cwltoil:main [cwl]
     - toil-wdl-runner = toil.wdl.wdltoil:main [wdl]
-    - toil-wdl-runner-old = toil.wdl.toilwdl:main [wdl]
     - toil-wes-cwl-runner = toil.server.cli.wes_cwl_runner:main [server]
     - _toil_mesos_executor = toil.batchSystems.mesos.executor:main [mesos]
     - _toil_contained_executor = toil.batchSystems.contained_executor:executor
 
 requirements:
   host:
-    - python >=3.7
+    - python >=3.8
     - pip
   run:
-    - python >=3.7
-    - dill >=0.3.2
-    - requests >=2
-    - docker-py >=3.7.2,<6
-    - urllib3 >=1.26.0
+    - python >=3.8
+    - dill >=0.3.2,<0.4
+    - requests >=2,<3
+    - docker-py >=3.7.2,<8
+    - urllib3 >=1.26.0,<3
     - python-dateutil
-    - psutil >=3.0.1
-    # - py-tes >=0.4.2,<1
-    - pypubsub >=4.0.3
-    - addict >=2.2.1
+    - psutil >=3.0.1,<6
+    - pypubsub >=4.0.3,<5
+    - addict >=2.2.1,<2.5
     - pytz >=2012
-    - enlighten >=1.5.2
-    - typing-extensions
+    - enlighten >=1.5.2,<2
+    - configargparse >=1.7,<2
+    - typing-extensions >=4.6.2,<5
+    - pyyaml >=6,<7
     #mesos pymesos isn't available
     #server reqs
     # - wes-service is missing
@@ -49,15 +51,16 @@ requirements:
     # - connexion >=2.10.0, <3
     # - flask >=2.0,<3
     # - werkzeug >=2.0,<3
-    # - flask-cors ==3.0.10
-    # - gunicorn ==20.1.0
+    # - flask-cors ==4.0.0
+    # - gunicorn ==21.2.0
     # - celery >=5.1.0, <6
     #aws reqs
     # mypy-boto3-{iam,sdb} are not yet in Conda
     # - boto >=2.48.0, <3
     # - boto3 >=1.20.46,<2.0
     # - boto3-stubs ==1.24.0
-    # - mypy-boto3-s3 ==1.24.0
+    - botocore
+    - mypy-boto3-s3
     # - mypy-boto3-sdb ==1.24.0
     # - mypy-boto3-iam ==1.24.0
     #encryption reqs
@@ -66,20 +69,19 @@ requirements:
     - apache-libcloud >=2.2.1
     - google-cloud-storage >=2,<=2.8.0
     #cwl reqs
-    - cwltool ==3.1.20230601100705
+    - cwltool ==3.1.20240112164112
     - schema-salad >=8.4.20230128170514
-    - galaxy-tool-util
-    - ruamel.yaml >=0.15,<=0.17.21
+    - galaxy-tool-util <23
+    - ruamel.yaml >=0.15,<=0.18.3
     - ruamel.yaml.clib >=0.2.6
-    - networkx >=2,<2.8.9
+    - networkx <4
     #htcondor reqs
     - python-htcondor >=10.2.0.post1
     #kubernetes reqs
     - python-kubernetes >=12.0.1,<22
     - idna >=2
     #wdl reqs
-    # - wdlparse ==0.1.0  # not yet packaged for Conda
-    - mock >=4.0.3
+    - miniwdl ==1.11.1
 
 test:
   imports:
@@ -106,9 +108,10 @@ test:
     - toil-cwl-runner --help
 
 about:
-  home: 'http://toil.ucsc-cgl.org/'
+  home: 'https://toil.ucsc-cgl.org/'
   summary: 'A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python'
   dev_url: 'https://github.com/DataBiosphere/toil'
   doc_url: 'https://toil.readthedocs.io/en/latest/'
   license: Apache-2.0
+  license_family: APACHE
   license_file: LICENSE
diff --git a/recipes/tooldistillator/meta.yaml b/recipes/tooldistillator/meta.yaml
new file mode 100644
index 0000000000000..b32c2a1446e8e
--- /dev/null
+++ b/recipes/tooldistillator/meta.yaml
@@ -0,0 +1,83 @@
+{% set version = "0.8.5.0" %}
+{% set sha256 = "67b8de2f9633fcd9a48c89b5cae9230e9600568ed0905c36284f75dd48745a83" %}
+
+context: {}
+
+package:
+  name: tooldistillator
+  version: '{{ version }}'
+
+source:
+  url: https://gitlab.com/ifb-elixirfr/abromics/tooldistillator/-/archive/{{ version }}/tooldistillator-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+build:
+  noarch: python
+  number: 0
+  script: python -m pip install --no-deps --ignore-installed .
+  entry_points:
+    - tooldistillator = tooldistillator.main:main
+  run_exports:
+    - {{ pin_subpackage('tooldistillator', max_pin='x.x') }}
+
+requirements:
+  host:
+    - python >=3.10
+    - pip >=23.1.2
+  run:
+    - pandas
+    - biopython
+    - python
+    - ld_impl_linux-64
+    - _libgcc_mutex
+    - libstdcxx-ng
+    - python_abi
+    - ca-certificates
+    - libgfortran5
+    - libgomp
+    - libgfortran-ng
+    - _openmp_mutex
+    - libgcc-ng
+    - libopenblas
+    - openssl
+    - xz
+    - ncurses
+    - libnsl
+    - libffi
+    - bzip2
+    - libzlib
+    - libblas
+    - readline
+    - tk
+    - libsqlite
+    - libcblas
+    - liblapack
+    - tzdata
+    - wheel
+    - setuptools
+    - pip
+    - six
+    - pytz
+    - python-tzdata
+    - python-dateutil
+    - numpy
+
+test:
+  commands:
+    - tooldistillator --help
+    - tooldistillator --version
+    - tooldistillator abricate --help
+
+about:
+    dev_url: https://gitlab.com/ifb-elixirfr/abromics/tooldistillator
+    doc_url: https://gitlab.com/ifb-elixirfr/abromics/tooldistillator/-/blob/main/docs/_build/html/index.html
+    home: https://gitlab.com/ifb-elixirfr/abromics
+    license: GPLv3
+    license_family: GPL
+    license_file: LICENSE.txt
+    summary: Tool to extract and aggregate information from different tool outputs to JSON parsable files
+
+extra:
+  recipe-maintainers:
+    - bebatut
+    - clsiguret
+
diff --git a/recipes/toulligqc/meta.yaml b/recipes/toulligqc/meta.yaml
index 47373894f471d..f9d01beea308f 100644
--- a/recipes/toulligqc/meta.yaml
+++ b/recipes/toulligqc/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "toulligqc" %}
-{% set version = "2.4" %}
+{% set version = "2.5.6" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,29 +7,31 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 6ce0d4db04e6296130853eddc4f9ee8b3c3954693b0310a2116ee8f0b8e4477f
+  sha256: 1b6087ccb927e0da6ff8f9c82c166de02d41bc55df9b9d7fc9edf264aec009f9
 
 build:
   number: 0
   entry_points:
     - toulligqc=toulligqc.toulligqc:main
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv "
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('toulligqc', max_pin="x") }}
 
 requirements:
   host:
-    - pip
-    - python >=3.8
+    - python >=3.10.0
   run:
-    - h5py >=2.10
-    - matplotlib-base >=3.1.2
-    - numpy >=1.17.4
-    - scipy >=1.3.3
-    - pandas >=0.25.3
-    - plotly >=4.5.0
-    - python >=3.8
-    - seaborn >=0.10
-    - scikit-learn >=0.22
+    - h5py >=3.7.0
+    - matplotlib-base >=3.6.3
+    - numpy >=1.24.2
+    - scipy >=1.10.1
+    - pandas >=1.5.3
+    - plotly >=5.15.0
+    - pysam >=0.21.0
+    - python >=3.10.0
+    - scikit-learn >=1.2.1
+    - tqdm >=4.64.1
 
 test:
   imports:
diff --git a/recipes/tower-cli/build.sh b/recipes/tower-cli/build.sh
index 575b16556dc43..e2dd716479b3c 100644
--- a/recipes/tower-cli/build.sh
+++ b/recipes/tower-cli/build.sh
@@ -1,4 +1,11 @@
 #!/bin/bash
-mkdir -p $PREFIX/bin
-cp $SRC_DIR/tw $PREFIX/bin/tw
-chmod 755 $PREFIX/bin/tw
+
+TGT="$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM"
+[ -d "$TGT" ] || mkdir -p "$TGT"
+[ -d "${PREFIX}/bin" ] || mkdir -p "${PREFIX}/bin"
+
+cp -p "$SRC_DIR"/*.jar "$TGT"
+
+cp $RECIPE_DIR/tw.sh $TGT/tw
+ln -s $TGT/tw $PREFIX/bin
+chmod 0755 "${PREFIX}/bin/tw"
diff --git a/recipes/tower-cli/meta.yaml b/recipes/tower-cli/meta.yaml
index c71734e7ab615..4df0c97fac1f8 100644
--- a/recipes/tower-cli/meta.yaml
+++ b/recipes/tower-cli/meta.yaml
@@ -1,27 +1,29 @@
-{% set version = "0.8.0" %}
+{% set name = "tw"%}
+{% set version = "0.9.2" %}
+{% set sha = "c9ebabdfe7aaeea0ce823c39819b0091503e6e8bf751281f90b620d20d365cec" %}
 
 package:
   name: tower-cli
   version: {{ version }}
 
 build:
-  number: 0
-
+  number: 1
+  noarch: generic
+  run_exports:
+    - {{ pin_subpackage("tower-cli", max_pin="x.x") }}
+    
 source:
-  - url: https://github.com/seqeralabs/tower-cli/releases/download/v{{ version }}/tw-linux-x86_64 # [linux]
-    sha256: c0d08bbf3059296e4819d33c6ff9282cfdd4d97087213c2d9aa0b5943ced60f4 # [linux]
-    fn: tw # [linux]
-  - url: https://github.com/seqeralabs/tower-cli/releases/download/v{{ version }}/tw-osx-x86_64 # [osx]
-    sha256: c32f9ad48a1a49f1aa62a496b253f24423ae361c1309740f22c429de7e9cc75a # [osx] 
-    fn: tw # [osx] 
-  - url: https://github.com/seqeralabs/tower-cli/releases/download/{{ version }}/tw-windows-x86_64.exe # [win]
-    sha256: 97c6aed555e1450bb5e32e0e031fe7416caec271925a64f48a4a14b420b3e457 # [win]
-    fn: tw # [win]
+  - url: https://github.com/seqeralabs/tower-cli/releases/download/v{{ version }}/tw.jar
+    sha256: {{ sha }}
 
+requirements:
+  run:
+    - openjdk >=17
 
 test:
   commands:
     - tw --help
+    - tw organizations --help
 
 about:
   home: "https://github.com/seqeralabs/tower-cli"
@@ -30,4 +32,4 @@ about:
 extra:
   skip-lints:
     - should_be_noarch_generic
-    - should_not_use_fn
\ No newline at end of file
+    - should_not_use_fn
diff --git a/recipes/tower-cli/tw.sh b/recipes/tower-cli/tw.sh
new file mode 100644
index 0000000000000..09af6ae2257ff
--- /dev/null
+++ b/recipes/tower-cli/tw.sh
@@ -0,0 +1,64 @@
+#!/bin/bash
+# tower-cli executable shell script
+# adapted from picard.sh launch script
+set -eu -o pipefail
+
+export LC_ALL=en_US.UTF-8
+jar_file="tw.jar"
+
+# Find original directory of bash script, resolving symlinks
+# http://stackoverflow.com/questions/59895/can-a-bash-script-tell-what-directory-its-stored-in/246128#246128
+SOURCE="${BASH_SOURCE[0]}"
+while [ -h "$SOURCE" ]; do # resolve $SOURCE until the file is no longer a symlink
+    DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
+    SOURCE="$(readlink "$SOURCE")"
+    [[ $SOURCE != /* ]] && SOURCE="$DIR/$SOURCE" # if $SOURCE was a relative symlink, we need to resolve it relative to the path where the symlink file was located
+done
+DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
+
+JAR_DIR=$DIR
+ENV_PREFIX="$(dirname $(dirname $DIR))"
+# Use Java installed with Anaconda to ensure correct version
+java="$ENV_PREFIX/bin/java"
+
+# if JAVA_HOME is set (non-empty), use it. Otherwise keep "java"
+if [ -n "${JAVA_HOME:=}" ]; then
+  if [ -e "$JAVA_HOME/bin/java" ]; then
+      java="$JAVA_HOME/bin/java"
+  fi
+fi
+
+# extract memory and system property Java arguments from the list of provided arguments
+# http://java.dzone.com/articles/better-java-shell-script
+default_jvm_mem_opts="-Xms512m -Xmx1g"
+jvm_mem_opts=""
+jvm_prop_opts=""
+pass_args=""
+for arg in "$@"; do
+    case $arg in
+        '-D'*)
+            jvm_prop_opts="$jvm_prop_opts $arg"
+            ;;
+        '-XX'*)
+            jvm_prop_opts="$jvm_prop_opts $arg"
+            ;;
+         '-Xm'*)
+            jvm_mem_opts="$jvm_mem_opts $arg"
+            ;;
+         *)
+	    if [[ ${pass_args} == '' ]] #needed to avoid preceeding space on first arg e.g. ' MarkDuplicates'
+            then 
+                pass_args="$arg" 
+	    else
+                pass_args="$pass_args \"$arg\"" #quotes later arguments to avoid problem with ()s in MarkDuplicates regex arg
+            fi
+            ;;
+    esac
+done
+
+if [ "$jvm_mem_opts" == "" ]; then
+    jvm_mem_opts="$default_jvm_mem_opts"
+fi
+
+pass_arr=($pass_args)
+eval "$java" $jvm_mem_opts $jvm_prop_opts -jar "$JAR_DIR/$jar_file" $pass_args
\ No newline at end of file
diff --git a/recipes/tracegroomer/meta.yaml b/recipes/tracegroomer/meta.yaml
new file mode 100644
index 0000000000000..b85ee45217450
--- /dev/null
+++ b/recipes/tracegroomer/meta.yaml
@@ -0,0 +1,59 @@
+{% set name = "tracegroomer" %}
+{% set version = "0.1.3" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/tracegroomer-{{ version }}.tar.gz
+  sha256: d81c872e9ca5f52d10413c4b9c0aff3aa54cc977125b531229dd8a1e4e6a5cdf
+
+build:
+  entry_points:
+    - tracegroomer = tracegroomer.__main__:main
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('tracegroomer', max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.10,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.10.0,<4.0.0
+    - sphinx >=7.2.6,<8.0.0
+    - click >=8.1.7,<9.0.0
+    - matplotlib-base >=3.8.2,<4.0.0
+    - mypy >=1.8.0,<2.0.0
+    - numpy >=1.26.4,<2.0.0
+    - pandas >=2.2.0,<3.0.0
+    - scipy >=1.12.0,<2.0.0
+    - scikit-learn >=1.4.0,<2.0.0
+    - seaborn >=0.13.2,<0.14.0
+    - openpyxl >=3.1.2,<4.0.0
+    - pyyaml >=6.0.1,<7.0.0
+    - python-dotenv >=1.0.1,<2.0.0
+    - pydantic >=1.10.8,<2.0.0
+
+test:
+  imports:
+    - tracegroomer
+  commands:
+    - pip check
+    - tracegroomer --help
+  requires:
+    - pip
+
+about:
+  summary: 'Format and normalise tracer metabolomics given file(s), to produce the .csv files which are ready for DIMet analysis.'
+  license: MIT
+  license_file: LICENSE
+  home: 'https://github.com/cbib/TraceGroomer'
+
+extra:
+  recipe-maintainers:
+    - hechth
diff --git a/recipes/trackhub/meta.yaml b/recipes/trackhub/meta.yaml
index 55e40d38900f7..0bdb126054bcf 100644
--- a/recipes/trackhub/meta.yaml
+++ b/recipes/trackhub/meta.yaml
@@ -1,14 +1,16 @@
 package:
   name: trackhub
-  version: "0.2.4"
+  version: "1.0"
 
 source:
-  url: https://pypi.python.org/packages/25/db/cf42623bcb91f209469d7d28d9647b814af2b51e1bbf1dce0a2df006ca34/trackhub-0.2.4.tar.gz
-  md5: 6d80a98e48fbb62b27777f5e14e6159c
+  url: https://files.pythonhosted.org/packages/f1/76/42a10f8849a56de359fde3e34f495e60709fbb75a8048afac4fb239fb424/trackhub-1.0.tar.gz
+  sha256: b7d85fcb0b17834343a900bb713d2e7e01d06bb4bf1dd0e06680e270572bda22
 
 build:
   noarch: python
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("trackhub", max_pin="x.x") }}
 
 requirements:
   host:
@@ -19,12 +21,18 @@ requirements:
   run:
     - python
     - docutils
+    - requests
+    - beautifulsoup4
+    - html5lib
+    - openpyxl
 
 test:
   imports:
     - trackhub
     - trackhub.test
     - trackhub.test.data
+  commands:
+    - trackhub_from_excel -h
 
 about:
   home: http://github.com/daler/trackhub
diff --git a/recipes/tracknado/meta.yaml b/recipes/tracknado/meta.yaml
new file mode 100644
index 0000000000000..9d5e8997a66e1
--- /dev/null
+++ b/recipes/tracknado/meta.yaml
@@ -0,0 +1,51 @@
+{% set name = "tracknado" %}
+{% set version = "0.2.4" %}
+{% set sha256 = "5d03efa896c0c61e0d5072dd2e6474e308d9014a0ef387cf11d4148ac376f64b" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/tracknado-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  noarch: python
+  script_env:
+    - SETUPTOOLS_SCM_PRETEND_VERSION={{ version }}
+  script: {{ PYTHON }} -m pip install . --no-deps -vvv
+  entry_points:
+    - tracknado = tracknado.cli:cli
+  run_exports:
+    - {{ pin_subpackage('tracknado', max_pin='x') }}
+
+requirements:
+  host:
+    - python >=3.7
+    - pip
+    - wheel
+    - setuptools-scm >=6.2
+  run:
+    - python >=3.7
+    - click
+    - pandas
+    - cookiecutter
+    - seaborn
+    - trackhub
+    - pillow
+    - loguru
+
+test:
+  imports:
+    - tracknado
+  commands:
+    - tracknado --help
+
+about:
+  home: https://pypi.org/project/tracknado/
+  summary: CLI library to generate UCSC trackhubs from sequencing data
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE
diff --git a/recipes/trackplot/meta.yaml b/recipes/trackplot/meta.yaml
index 9996baa1d1429..f0d3984428fb9 100644
--- a/recipes/trackplot/meta.yaml
+++ b/recipes/trackplot/meta.yaml
@@ -1,6 +1,5 @@
 {% set name = "trackplot" %}
-{% set version = "0.3.1" %}
-
+{% set version = "0.3.7" %}
 
 package:
   name: trackplot
@@ -8,19 +7,24 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: c81bebd4bf515c72a8af9cee3e08935577449511c04c8e95f9c79fa384300c83
+  sha256: 5e650448e71d81eaae61fbbdcf88e8130b79f008278128ee1311c2b16a24b803
 
 build:
   noarch: python
   number: 0
-  script: {{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv
+  entry_points:
+    - trackplot = trackplot.cli:main
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
 
 requirements:
   host:
-    - python
-    - poetry >=1.4.2
+    - python >=3.8,<3.12
+    - pip
+    - poetry-core
   run:
-    - wheel
+    - python >=3.8,<3.12
     - adjusttext >=0.7.3
     - cairocffi >=1.4.0
     - click
@@ -32,16 +36,16 @@ requirements:
     - numpy >=1.24.1
     - pandas >=1.5.3
     - pybigwig >=0.3.18
-    - pysam >=0.20.0
+    - pysam >=0.21.0
     - requests
     - scipy >=1.10.0
     - seaborn-base >=0.12.2
     - xmltodict
+    - flask >=2.3.2
 
 test:
   imports:
     - trackplot
-
   commands:
     - trackplot --help
 
diff --git a/recipes/tracy/meta.yaml b/recipes/tracy/meta.yaml
index 9bcf56d87130d..6a8f5ac375bd9 100644
--- a/recipes/tracy/meta.yaml
+++ b/recipes/tracy/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.7.5" %}
-{% set sha256 = "f53ddc40f1ab212d530324b7535896ee5400d8f9bd22d08fa8c3aaa103b0ea2c" %}
+{% set version = "0.7.6" %}
+{% set sha256 = "68bb079d9c05c98d7de1bf044e6c4da6a409d8f2abc8b96038b1782bc5497c5e" %}
 
 package:
   name: tracy
@@ -13,7 +13,10 @@ source:
     git_rev: a654b57
 
 build:
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("tracy", max_pin="x.x") }}
+
 
 requirements:
   build:
@@ -55,3 +58,6 @@ extra:
   skip-lints:
     - uses_vcs_url
     - missing_hash
+  identifiers:
+    - doi:10.1186/s12864-020-6635-8
+    - biotools:Gear-Genomics
diff --git a/recipes/transannot/build.sh b/recipes/transannot/build.sh
new file mode 100644
index 0000000000000..c01a11fd88807
--- /dev/null
+++ b/recipes/transannot/build.sh
@@ -0,0 +1,7 @@
+#!/bin/bash -e
+
+mkdir build
+cd build
+cmake -DCMAKE_INSTALL_PREFIX="${PREFIX}" -DHAVE_TESTS=0 -DHAVE_MPI=0 -DHAVE_SSE4_1=1 -DVERSION_OVERRIDE="${PKG_VERSION}" ..
+make -j${CPU_COUNT} ${VERBOSE_CM}
+make install
diff --git a/recipes/transannot/meta.yaml b/recipes/transannot/meta.yaml
new file mode 100644
index 0000000000000..8db64f2fe9716
--- /dev/null
+++ b/recipes/transannot/meta.yaml
@@ -0,0 +1,52 @@
+{% set version = "1-fa9ebab" %}
+{% set sha256 = "432f31744683fa467a1ab76493818f52d3cb8f87d489c7190c255f18c03d9418" %}
+
+package:
+  name: transannot
+  version: {{ version|replace("-", ".")  }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('transannot', max_pin="x") }}
+
+source:
+  url: https://github.com/soedinglab/transannot/archive/{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - cmake
+    - make
+    - llvm-openmp  # [osx]
+    - libgomp      # [linux]
+  host:
+    - perl
+    - gawk
+    - zlib
+    - bzip2
+  run:
+    - aria2
+    - wget
+    - gawk
+    - zlib
+    - bzip2
+
+test:
+  commands:
+    - transannot > /dev/null
+
+about:
+  home: https://github.com/soedinglab/transannot
+  summary: "TransAnnot: fast and all-in-one transcriptome annotation pipeline"
+  license: GPL-3.0-or-later
+  license_family: GPL
+  license_file: LICENSE.md 
+
+extra:
+  identifiers:
+    - biotools:transannot
+  recipe-maintainers:
+    - mariia-zelenskaia
diff --git a/recipes/tree-qmc/build.sh b/recipes/tree-qmc/build.sh
new file mode 100644
index 0000000000000..34621c3bee530
--- /dev/null
+++ b/recipes/tree-qmc/build.sh
@@ -0,0 +1,13 @@
+cd external/MQLib
+sed -i.bak "s#g++#${CXX}#" Makefile
+make
+cd ../..
+$CXX -std=c++11 -O2 \
+    -I external/MQLib/include -I external/toms743 \
+    -o tree-qmc \
+    src/*.cpp external/toms743/toms743.cpp \
+    external/MQLib/bin/MQLib.a -lm \
+    -DVERSION=\"$(cat version.txt)\"
+mkdir -p $PREFIX/bin
+cp tree-qmc $PREFIX/bin/
+chmod a+x $PREFIX/bin/tree-qmc
diff --git a/recipes/tree-qmc/conda_build_config.yaml b/recipes/tree-qmc/conda_build_config.yaml
new file mode 100644
index 0000000000000..7fe2892e9edfa
--- /dev/null
+++ b/recipes/tree-qmc/conda_build_config.yaml
@@ -0,0 +1,5 @@
+c_compiler_version: # [unix]
+  - 9.3.0 # [linux]
+
+cxx_compiler_version:
+  - 9.3.0 # [linux]
diff --git a/recipes/tree-qmc/meta.yaml b/recipes/tree-qmc/meta.yaml
new file mode 100644
index 0000000000000..e000a16bf22e1
--- /dev/null
+++ b/recipes/tree-qmc/meta.yaml
@@ -0,0 +1,32 @@
+{% set name = "TREE-QMC" %}
+{% set version = "3.0.4" %}
+
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://github.com/molloy-lab/{{ name|upper }}/archive/refs/tags/v{{ version }}.zip
+  sha256: d7490fb79d23d5aa8c24c661e070c150421b0991464c4a8ae6cc694cd124f83e
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('tree-qmc', max_pin="x") }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('cxx') }}
+  host:
+  run:
+
+test:
+  commands:
+    - tree-qmc -h
+
+about:
+  home: https://github.com/molloy-lab/TREE-QMC
+  license: MIT
+  summary: TREE-QMC is a quartet-based method for estimating species trees from gene trees.
diff --git a/recipes/treeqmc/build.sh b/recipes/treeqmc/build.sh
new file mode 100644
index 0000000000000..56130c62a04c3
--- /dev/null
+++ b/recipes/treeqmc/build.sh
@@ -0,0 +1,15 @@
+#!/bin/bash
+
+cd external/MQLib
+sed -i.bak "s#g++#${CXX}#" Makefile
+make
+cd ../..
+$CXX -std=c++11 -O2 \
+    -I external/MQLib/include -I external/toms743 \
+    -o tree-qmc \
+    src/*.cpp external/toms743/toms743.cpp \
+    external/MQLib/bin/MQLib.a -lm \
+    -DVERSION=\"$(cat version.txt)\"
+mkdir -p $PREFIX/bin
+cp tree-qmc $PREFIX/bin/
+chmod a+x $PREFIX/bin/tree-qmc
diff --git a/recipes/treeqmc/conda_build_config.yaml b/recipes/treeqmc/conda_build_config.yaml
new file mode 100644
index 0000000000000..7fe2892e9edfa
--- /dev/null
+++ b/recipes/treeqmc/conda_build_config.yaml
@@ -0,0 +1,5 @@
+c_compiler_version: # [unix]
+  - 9.3.0 # [linux]
+
+cxx_compiler_version:
+  - 9.3.0 # [linux]
diff --git a/recipes/treeqmc/meta.yaml b/recipes/treeqmc/meta.yaml
new file mode 100644
index 0000000000000..47e3e64294ac8
--- /dev/null
+++ b/recipes/treeqmc/meta.yaml
@@ -0,0 +1,31 @@
+{% set name = "TREEQMC" %}
+{% set version = "3.0.1" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://github.com/molloy-lab/TREE-QMC/archive/refs/tags/v{{ version }}.zip
+  sha256: 0fc11b22d981cbf62ee3d832ed79ac7dbf526669231b0137fd4e4756a0af506c
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('treeqmc', max_pin="x") }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('cxx') }}
+
+test:
+  commands:
+    - tree-qmc -h
+
+about:
+  home: https://github.com/molloy-lab/TREE-QMC
+  license: MIT
+  license_family: MIT
+  summary: TREE-QMC is a quartet-based method for estimating species trees from gene trees.
+  dev_url: https://github.com/molloy-lab/TREE-QMC
diff --git a/recipes/treesap/meta.yaml b/recipes/treesap/meta.yaml
new file mode 100644
index 0000000000000..d4ec8012f3251
--- /dev/null
+++ b/recipes/treesap/meta.yaml
@@ -0,0 +1,44 @@
+{% set version = "1.0.10" %}
+
+package:
+  name: "treesap"
+  version: "{{ version }}"
+
+source:
+  url: https://pypi.io/packages/source/t/treesap/treesap-{{ version }}.tar.gz
+  sha256: 74d2d6f1106f5345ec6408a443be6d2a9b983fb83e4957d04e22be88659905ab
+
+build:
+  noarch: python
+  number: 0
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage('treesap', max_pin="x") }}
+
+requirements:
+  host:
+    - pip
+    - python
+  run:
+    - python
+    - numpy
+    - scipy
+    - treeswift
+
+test:
+  imports:
+    - treesap
+
+about:
+  home: https://github.com/niemasd/TreeSAP
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE
+  summary: "TreeSAP: Tree SAmpling under Phylogenetic models"
+  dev_url: https://github.com/niemasd/TreeSAP
+
+extra:
+  identifiers:
+    - biotools:treesap
+  maintainers:
+    - niemasd
diff --git a/recipes/treeswift/meta.yaml b/recipes/treeswift/meta.yaml
index 29ddb697dd74e..e4dc53fefc028 100644
--- a/recipes/treeswift/meta.yaml
+++ b/recipes/treeswift/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.1.37" %}
+{% set version = "1.1.43" %}
 
 package:
   name: "treeswift"
@@ -6,12 +6,14 @@ package:
 
 source:
   url: https://pypi.io/packages/source/t/treeswift/treeswift-{{ version }}.tar.gz
-  sha256: d7899104428cbb157027099fbe2fbaec1e87870ae48d561a6075a29498827b6b
+  sha256: 1a7805cb207ad76e5224f043c9d0fd1d0d6e0fc9890faca26aba44e287999c6e
 
 build:
   noarch: python
   number: 0
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv "
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage('treeswift', max_pin="x") }}
 
 requirements:
   host:
@@ -30,3 +32,4 @@ about:
   license_family: GPL3
   license_file: LICENSE
   summary: "TreeSwift: Fast tree module for Python 2 and 3"
+  dev_url: https://github.com/niemasd/TreeSwift
diff --git a/recipes/treetime/meta.yaml b/recipes/treetime/meta.yaml
index 8537007299c47..55bc9b5fb05f4 100644
--- a/recipes/treetime/meta.yaml
+++ b/recipes/treetime/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.10.1" %}
-{% set sha256 = "b9b21f728c07242ff73c90903933c5d403246c8612f348f54de09620f218b75d" %}
+{% set version = "0.11.3" %}
+{% set sha256 = "c19b336691fcf3fddbb2b0e55000ff6d4aafca1f2bdf75b4ab39631a57a73e2b" %}
 
 package:
   name: treetime
@@ -12,7 +12,11 @@ source:
 build:
   noarch: python
   number: 0
-  script: python -m pip install --no-deps --ignore-installed .
+  script: {{ PYTHON }} -m pip install --no-deps --ignore-installed . -vvv
+  entry_points:
+    - treetime = treetime.__main__:main
+  run_exports:
+    - {{ pin_subpackage('treetime', max_pin="x") }}
 
 requirements:
   host:
@@ -36,8 +40,10 @@ about:
   home: https://github.com/neherlab/treetime
   license: MIT
   license_family: MIT
+  license_file: LICENSE
   summary: Maximum-Likelihood dating and ancestral inference for phylogenetic trees
   doc_url: https://treetime.readthedocs.io/en/latest/index.html
+  dev_url: https://github.com/neherlab/treetime
 
 extra:
   recipe-maintainers:
diff --git a/recipes/trf/build.sh b/recipes/trf/build.sh
index bc49ad10f8798..50dcf40faed52 100644
--- a/recipes/trf/build.sh
+++ b/recipes/trf/build.sh
@@ -1,5 +1,5 @@
 #!/bin/sh
 
 ./configure --prefix=$PREFIX CPPFLAGS=-DUNIXCONSOLE
-make
+make -j ${CPU_COUNT}
 make install
diff --git a/recipes/trf/meta.yaml b/recipes/trf/meta.yaml
index ed87b9b7fba4e..ad38c60967d71 100644
--- a/recipes/trf/meta.yaml
+++ b/recipes/trf/meta.yaml
@@ -11,7 +11,9 @@ source:
      
 
 build:
-  number: 4
+  number: 5
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   build:
@@ -30,5 +32,7 @@ about:
   summary: 'Tandem Repeats Finder is a program to locate and display tandem repeats in DNA sequences.'
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:Trf
diff --git a/recipes/trgt/meta.yaml b/recipes/trgt/meta.yaml
index 484af55245473..030c04cde40a0 100644
--- a/recipes/trgt/meta.yaml
+++ b/recipes/trgt/meta.yaml
@@ -1,7 +1,7 @@
 {% set name = "trgt" %}
-{% set version = "0.4.0" %}
-{% set trgt_sha256 = "a76011125d553b016acded6bde532d6e40fe4e5cb4249e37c9c52f23046ddd63" %}
-{% set trvz_sha256 = "1a4fa4e78a2fb75ed5ab7c44da916c830f2606e1def279a7ba480b76879ba9e2" %}
+{% set version = "0.9.0" %}
+{% set trgt_sha256 = "fba2edb311c2ea4f15ae1e0f1b464ae470a73f803d12630b8ea6dbeeff3cc3f9" %}
+{% set trvz_sha256 = "08dcb1e5ca9d317140f26d635b323d12a8384b1263fda542e293effb2ca81280" %}
 
 package:
   name: {{ name }}
@@ -22,10 +22,12 @@ extra:
   recipe-maintainers:
     - zeeev
     - williamrowell
-    
+
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('trgt', max_pin="x") }}
 
 test:
   commands:
diff --git a/recipes/trimal/build.sh b/recipes/trimal/build.sh
index 27923c51cacab..3b76620205a47 100644
--- a/recipes/trimal/build.sh
+++ b/recipes/trimal/build.sh
@@ -1,7 +1,7 @@
 #!/bin/sh
 
 cd source
-make CC="${CXX}" FLAGS="${CPPFLAGS} ${CXXFLAGS}"
+make CC="${CXX}" FLAGS="${CPPFLAGS} ${CXXFLAGS}" -j ${CPU_COUNT}
 
 mkdir -p $PREFIX/bin
 
diff --git a/recipes/trimal/meta.yaml b/recipes/trimal/meta.yaml
index 27bf643b5e1ef..c9a3dea2d9fab 100644
--- a/recipes/trimal/meta.yaml
+++ b/recipes/trimal/meta.yaml
@@ -7,7 +7,9 @@ source:
   md5: cb193397635da45be350e9ac96dafe45
 
 build:
-  number: 8
+  number: 9
+  run_exports:
+    - {{ pin_subpackage('trimal', max_pin='x') }}
 
 requirements:
   build:
@@ -27,5 +29,7 @@ about:
   license: GNU General Public License v3 or later (GPLv3+)
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:trimAl
diff --git a/recipes/trimnami/meta.yaml b/recipes/trimnami/meta.yaml
new file mode 100644
index 0000000000000..3cdaa50df2cb5
--- /dev/null
+++ b/recipes/trimnami/meta.yaml
@@ -0,0 +1,44 @@
+{% set name = "trimnami" %}
+{% set version = "0.1.4" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: b98b6011ec0c898942a2c11047ec81fbf3ee2dc2ada2c999fd741739374a498f
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
+  number: 0
+
+requirements:
+  host:
+    - python >=3.9
+    - pip
+  run:
+    - python >=3.9
+    - snaketool-utils >=0.0.4
+    - snakemake >=7.14.0,<8
+    - pulp <2.8
+    - pyyaml >=6.0
+    - Click >=8.1.3
+    - metasnek >=0.0.8
+
+test:
+  commands:
+    - trimnami --help
+
+about:
+  home: https://github.com/beardymcjohnface/Trimnami
+  summary: Read-trimming pipelines for multiple samples
+  license: MIT
+  license_file: trimnami/trimnami.LICENSE
+
+extra:
+  recipe-maintainers:
+    - beardymcjohnface
diff --git a/recipes/trinity/build.sh b/recipes/trinity/build.sh
index 4d6f8b5e7ea0f..453ee990e1564 100644
--- a/recipes/trinity/build.sh
+++ b/recipes/trinity/build.sh
@@ -5,7 +5,7 @@ export INCLUDE_PATH="${PREFIX}/include"
 export LIBRARY_PATH="${PREFIX}/lib"
 export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib -fopenmp"
 
-export CXXFLAGS="-O3 -I${PREFIX}/include ${LDFLAGS}"
+export CXXFLAGS="${CXXFLAGS} -O3 -I${PREFIX}/include ${LDFLAGS}"
 
 export BINARY_HOME="${PREFIX}/bin"
 export TRINITY_HOME="${PREFIX}/opt/trinity-${PKG_VERSION}"
@@ -32,18 +32,20 @@ cp -LR PyLib ${TRINITY_HOME}/
 cp -LR trinity-plugins ${TRINITY_HOME}/
 cp -LR util ${TRINITY_HOME}/
 
+sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' ${TRINITY_HOME}/util/misc/fastq_stats.pl
+
 # add link to Trinity from bin so in PATH
 cd ${BINARY_HOME}
-ln -s ${TRINITY_HOME}/Trinity
-ln -s ${TRINITY_HOME}/util/*.pl .
-ln -s ${TRINITY_HOME}/Analysis/DifferentialExpression/PtR
-ln -s ${TRINITY_HOME}/Analysis/DifferentialExpression/run_DE_analysis.pl
-ln -s ${TRINITY_HOME}/Analysis/DifferentialExpression/analyze_diff_expr.pl
-ln -s ${TRINITY_HOME}/Analysis/DifferentialExpression/define_clusters_by_cutting_tree.pl
-ln -s ${TRINITY_HOME}/Analysis/SuperTranscripts/Trinity_gene_splice_modeler.py
-ln -s ${TRINITY_HOME}/Analysis/SuperTranscripts/extract_supertranscript_from_reference.py
-ln -s ${TRINITY_HOME}/util/support_scripts/get_Trinity_gene_to_trans_map.pl
-ln -s ${TRINITY_HOME}/util/misc/contig_ExN50_statistic.pl
+ln -sf ${TRINITY_HOME}/Trinity
+ln -sf ${TRINITY_HOME}/util/*.pl .
+ln -sf ${TRINITY_HOME}/Analysis/DifferentialExpression/PtR
+ln -sf ${TRINITY_HOME}/Analysis/DifferentialExpression/run_DE_analysis.pl
+ln -sf ${TRINITY_HOME}/Analysis/DifferentialExpression/analyze_diff_expr.pl
+ln -sf ${TRINITY_HOME}/Analysis/DifferentialExpression/define_clusters_by_cutting_tree.pl
+ln -sf ${TRINITY_HOME}/Analysis/SuperTranscripts/Trinity_gene_splice_modeler.py
+ln -sf ${TRINITY_HOME}/Analysis/SuperTranscripts/extract_supertranscript_from_reference.py
+ln -sf ${TRINITY_HOME}/util/support_scripts/get_Trinity_gene_to_trans_map.pl
+ln -sf ${TRINITY_HOME}/util/misc/contig_ExN50_statistic.pl
 cp ${TRINITY_HOME}/trinity-plugins/BIN/seqtk-trinity .
 
 # Find real path when executing from a symlink
@@ -56,7 +58,6 @@ sed -i.bak "s/\$ROOTDIR\/trinity-plugins\/Trimmomatic/\/opt\/anaconda1anaconda2a
 sed -i.bak 's/my $TRIMMOMATIC = "\([^"]\+\)"/my $TRIMMOMATIC = '"'"'\1'"'"'/' ${TRINITY_HOME}/Trinity
 sed -i.bak 's/my $TRIMMOMATIC_DIR = "\([^"]\+\)"/my $TRIMMOMATIC_DIR = '"'"'\1'"'"'/' ${TRINITY_HOME}/Trinity
 
-
 find ${TRINITY_HOME} -type f -name "*.bak" -print0 | xargs -0 rm -f
 
 # export TRINITY_HOME as ENV variable
diff --git a/recipes/trinity/meta.yaml b/recipes/trinity/meta.yaml
index c686e8c82f057..721036e21f6e1 100644
--- a/recipes/trinity/meta.yaml
+++ b/recipes/trinity/meta.yaml
@@ -13,7 +13,9 @@ source:
     - makefile.patch
 
 build:
-  number: 3
+  number: 4
+  run_exports:
+    - {{ pin_subpackage('trinity', max_pin="x") }}
 
 requirements:
   build:
@@ -72,9 +74,7 @@ about:
   home: https://github.com/trinityrnaseq/trinityrnaseq/
   license: BSD-3-Clause
   license_family: BSD
-  license_file:
-    - LICENSE
-    - LICENSE.txt
+  license_file: LICENSE
   summary: "Trinity assembles transcript sequences from Illumina RNA-Seq data."
   doc_url: https://github.com/trinityrnaseq/trinityrnaseq/wiki
   dev_url: https://github.com/trinityrnaseq/trinityrnaseq/
diff --git a/recipes/trinotate/meta.yaml b/recipes/trinotate/meta.yaml
index 74c17d197b97c..953731f0e3d5e 100644
--- a/recipes/trinotate/meta.yaml
+++ b/recipes/trinotate/meta.yaml
@@ -1,9 +1,9 @@
 {% set name = "Trinotate" %}
-{% set version = "4.0.1" %}
-{% set sha256 = "a07cedeb59a1c2b681696ecd878dfdf10e3bdf85185f5197e89a529837518a9b" %}
+{% set version = "4.0.2" %}
+{% set sha256 = "2f633df2e05e5d22e19159aa147060be7884a057314cad3e6db91dba8910fad1" %}
 
 package:
-  name: trinotate
+  name: {{ name|lower }}
   version: {{ version }}
 
 source:
@@ -15,6 +15,8 @@ source:
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('trinotate', max_pin="x") }}
 
 requirements:
   host:
@@ -49,3 +51,8 @@ about:
   summary: 'Trinotate is a comprehensive annotation suite designed for automatic
     functional annotation of transcriptomes, particularly de novo assembled
     transcriptomes, from model or non-model organisms'
+
+extra:
+  identifiers:
+    - biotools:trinotate
+    - usegalaxy-eu:trinotate
diff --git a/recipes/trtools/meta.yaml b/recipes/trtools/meta.yaml
index 822e6ccd0d326..9cd7d82dec675 100644
--- a/recipes/trtools/meta.yaml
+++ b/recipes/trtools/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "trtools" %}
-{% set version = "5.0.2" %}
+{% set version = "6.0.1" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,9 +7,9 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: bdfb102dc207b6bade1859b394bf65c44f380c5d52b2dbefe52506cf0b563b64
+  sha256: 915e5f1e2ee490ad2e78294014da71cb103182277fc075ee0ccc1d27aab8bece
 
-build: 
+build:
   noarch: python
   entry_points:
     - dumpSTR=trtools.dumpSTR:run
@@ -18,24 +18,30 @@ build:
     - compareSTR=trtools.compareSTR:run
     - qcSTR=trtools.qcSTR:run
     - associaTR=trtools.associaTR:run
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vvv "
+    - prancSTR = trtools.prancSTR:run
+    - simTR = trtools.simTR:run
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
   number: 0
+  run_exports:
+    - {{ pin_subpackage('trtools', max_pin="x") }}
 
 requirements:
   host:
-    - python >=3.5
-    - pip >=20.1.1
+    - python >=3.7.1
+    - poetry-core >=1.0.0
+    - pip >=20.3
   run:
-    - cyvcf2 >=0.30.1
-    - matplotlib-base >=3.2.2
-    - numpy >=1.18.5
-    - pandas >=1.0.5
-    - pybedtools >=0.8.1
-    - pysam >=0.16.0.1
-    - python >=3.5
+    - python >=3.7.1,<4.0
+    - cyvcf2 >=0.30.4
+    - matplotlib-base >=3.1.2
+    - numpy >=1.17.3,<2.0
+    - pandas >=1.2.0
+    - pysam >=0.15.4
     - scikit-learn >=0.23.1
-    - scipy >=1.4.1
-    - statsmodels >=0.13.5
+    - scipy >=1.3.3
+    - statsmodels >=0.10.2
+    - pyfaidx >=0.5.6
+    - ART >=2016.06.05
 
 test:
   imports:
@@ -46,6 +52,8 @@ test:
     - trtools.mergeSTR
     - trtools.qcSTR
     - trtools.statSTR
+    - trtools.prancSTR
+    - trtools.simTR
     - trtools.utils
   requires:
     - bcftools
@@ -59,16 +67,22 @@ test:
     - statSTR --help
     - compareSTR --help
     - qcSTR --help
+    - prancSTR --help
+    - simTR --help
 
 about:
-  home: http://github.com/gymreklab/TRTools
+  home: https://github.com/gymreklab/TRTools
   license: MIT
   license_family: MIT
   license_file: LICENSE.txt
-  summary: Toolkit for genome-wide analysis of tandem repeats https://trtools.readthedocs.io/ 
+  summary: Toolkit for genome-wide analysis of tandem repeats
   doc_url: https://trtools.readthedocs.io/
   dev_url: https://github.com/gymreklab/TRTools
 
 extra:
   recipe-maintainers:
     - LiterallyUniqueLogin
+    - aryarm
+  identifiers:
+    - biotools:trtools
+    - doi:10.1093/bioinformatics/btaa736
diff --git a/recipes/trust4/meta.yaml b/recipes/trust4/meta.yaml
index 790077fce981f..97f07b02111e8 100644
--- a/recipes/trust4/meta.yaml
+++ b/recipes/trust4/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.0.11" %}
+{% set version = "1.1.1" %}
 
 package:
   name: trust4
@@ -6,10 +6,12 @@ package:
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage('trust4', max_pin="x") }}
 
 source:
   url: https://github.com/liulab-dfci/TRUST4/archive/v{{ version }}.tar.gz
-  sha256: 33528e37a893bca6c4451eae6a9f4676b67bae288e7bbb405dc2b9dc8fe7f3ff
+  sha256: 65ea98d468a2921c1591120041c3ca1caac76c37bd804b0d4b64b11c73a382ed
 
 requirements:
   build:
@@ -37,7 +39,8 @@ test:
     - which run-trust4
 
 about:
-  home: https://github.com/liulab-dfci/TRUST4 
+  home: https://github.com/liulab-dfci/TRUST4
   summary: TCR and BCR assembly from bulk or single-cell RNA-seq data
   license: GPL-3.0-only
+  license_family: GPL3
   license_file: LICENSE.txt
diff --git a/recipes/truvari/meta.yaml b/recipes/truvari/meta.yaml
index 407f8a1fed987..b27d82385cd1e 100644
--- a/recipes/truvari/meta.yaml
+++ b/recipes/truvari/meta.yaml
@@ -1,44 +1,51 @@
-{% set version = "3.4.0" %}
-{% set hash = "d24502c32328f3efea736234afb3a7ca317a9611c4e0c5c592924622c48c080a" %}
+{% set name = "truvari" %}
+{% set version = "4.2.2" %}
+{% set sha256 = "4e7e504e8221b99c321d0825e32299954ef324f382b16fa09c97135aa1e4f872" %}
 
 package:
-  name: truvari
+  name: {{ name|lower }}
   version: {{ version }}
 
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/truvari-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
 build:
   number: 0
   noarch: python
-  script: python -m pip install --no-deps --ignore-installed .
-
-source:
-  url: https://files.pythonhosted.org/packages/4f/c5/061952ee8e904a6a7a3f961e7bc7ea6513bcb0c1108402f1c5a6af9dd290/Truvari-3.4.0.tar.gz
-  sha256: {{ hash }}
+  script: {{ PYTHON }} -m pip install . -vvv
+  entry_points:
+    - truvari = truvari.__main__:main
+  run_exports:
+    - {{ pin_subpackage('truvari', max_pin="x") }}
 
 requirements:
   host:
-    - python >=3.6
+    - python >=3.8
     - pip
   run:
-    - python >=3.6
-    - pytabix
-    - bwapy
-    - pandas
-    - python-levenshtein ==0.12.2
-    - python-edlib >=1.3.8.post2
-    - progressbar2 >=3.41.0
-    - pysam >=0.15.2
-    - intervaltree >=3.0.2
-    - joblib >=1.0.1
-    - numpy >=1.21.2
+    - python >=3.8
+    - pywfa >=0.5.1
+    - rich >=12.5.1
+    - python-edlib >=1.3.9
+    - pysam >=0.22
+    - intervaltree >=3.1
+    - joblib >=1.2.0
     - pytabix >=0.1
     - bwapy >=0.1.4
-    - pandas >=1.3.3
+    - pandas >=1.5.3
+    - pyabpoa >=1.4.3
+    - mafft >=7.515
 
 test:
+  imports:
+    - truvari
   commands:
     - truvari --help
 
 about:
   home: https://github.com/ACEnglish/truvari
-  license: MIT
   summary: 'Structural variant comparison tool for VCFs'
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
diff --git a/recipes/trycycler/meta.yaml b/recipes/trycycler/meta.yaml
index 6a2dc9921ee6a..54af9c6a1546c 100644
--- a/recipes/trycycler/meta.yaml
+++ b/recipes/trycycler/meta.yaml
@@ -1,5 +1,5 @@
 {% set name="trycycler" %}
-{% set version="0.5.4" %}
+{% set version="0.5.5" %}
 
 package:
   name: {{ name }}
@@ -9,17 +9,19 @@ build:
   noarch: python
   number: 0
   script: {{ PYTHON }} -m pip install --no-deps --ignore-installed .
+  run_exports:
+    - {{ pin_subpackage('trycycler', max_pin="x.x") }}
 
 source:
   url: https://github.com/rrwick/{{ name }}/archive/v{{ version }}.tar.gz
-  sha256: 6880e6920a5e4f3764fc3c7dd1dfc7ec4c9106eb5eb2ed90ae292e73c74893df
+  sha256: 5794a4520c3b8673adc69c975cee06d7658cd74ac6d9378d1fc7af860bec1a89
 
 requirements:
   host:
-    - python >=3.6
+    - python >=3.6,<3.11
     - pip
   run:
-    - python >=3.6
+    - python >=3.6,<3.11
     - python-edlib
     - scipy
     - numpy
diff --git a/recipes/tsebra/build.sh b/recipes/tsebra/build.sh
new file mode 100644
index 0000000000000..2b7abe1412368
--- /dev/null
+++ b/recipes/tsebra/build.sh
@@ -0,0 +1,10 @@
+#!/bin/bash
+
+# Copy scripts
+mkdir -p ${PREFIX}/bin
+cp tsebra/bin/*.py ${PREFIX}/bin/
+chmod +x ${PREFIX}/bin/*.py
+
+# Copy configuration files
+mkdir -p ${PREFIX}/config
+cp -r tsebra/config/* ${PREFIX}/config/
diff --git a/recipes/tsebra/meta.yaml b/recipes/tsebra/meta.yaml
new file mode 100644
index 0000000000000..8417e8571f382
--- /dev/null
+++ b/recipes/tsebra/meta.yaml
@@ -0,0 +1,36 @@
+{% set version = "1.1.2.5" %}
+{% set name = "tsebra" %}
+{% set sha256 = "2d7412dbc42087faf18df4554656488549ddef946883e4b3001e84ea4abfc726" %}
+
+package:
+  name: "{{ name }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://github.com/Gaius-Augustus/TSEBRA/archive/refs/tags/v{{ version }}.tar.gz"
+  sha256: "{{ sha256 }}"
+  folder: tsebra 
+
+build:
+  number: 0
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage("tsebra", max_pin="x.x") }}
+requirements:
+  build:
+    - python >=3.5.2
+    - numpy
+  run:
+    - python >=3.5.2
+    - numpy
+
+test:
+  commands:
+    - tsebra.py --help
+
+about:
+  home: https://github.com/Gaius-Augustus/TSEBRA
+  license: Artistic-2.0
+  license_family: Other
+  summary: |
+    TSEBRA is a combiner tool that selects transcripts from gene predictions based on the support by extrisic evidence in form of introns and start/stop codons.
diff --git a/recipes/ucsc-axtchain/include.patch b/recipes/ucsc-axtchain/include.patch
index eb32b88d8f358..e4831ef2dea13 100644
--- a/recipes/ucsc-axtchain/include.patch
+++ b/recipes/ucsc-axtchain/include.patch
@@ -1,5 +1,5 @@
 --- kent/src/inc/common.mk	2017-11-07 17:46:00.000000000 -0500
-+++ kent/src/inc/common.mk.new	2017-11-13 17:44:51.017090255 -0500
++++ kent/src/inc/common.mk	2017-11-13 17:44:51.017090255 -0500
 @@ -17,7 +17,7 @@
  endif
  
@@ -9,14 +9,14 @@
  
  # to check for Mac OSX Darwin specifics:
  UNAME_S := $(shell uname -s)
---- kent/src/utils/bedJoinTabOffset	2018-06-06 02:23:56.000000000 +0200
-+++ kent/src/utils/bedJoinTabOffset	2018-06-06 02:23:56.000000000 +0200
-@@ -1,4 +1,4 @@
--#!/usr/bin/env python2.7
-+#!/usr/bin/env python
- 
- import logging, sys, optparse, string
- from collections import defaultdict
+--- kent/src/inc/common.mk	2022-10-25 12:00:00.000000000 +0100
++++ kent/src/inc/common.mk	2022-10-25 12:00:00.000000000 +0100
+@@ -147,4 +147,4 @@
+-       L+=${PREFIX}/lib/libssl.a ${PREFIX}/lib/libcrypto.a -ldl
++       L+=${PREFIX}/lib/libssl.so ${PREFIX}/lib/libcrypto.so -ldl
+    else
+      ifneq ($(wildcard /opt/local/lib/libssl.a),)
+          L+=/opt/local/lib/libssl.a
 --- kent/src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed	2018-06-06 02:23:56.000000000 +0200
 +++ kent/src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed	2018-06-06 02:23:56.000000000 +0200
 @@ -1,4 +1,4 @@
@@ -25,3 +25,16 @@
  # expMatrixToBarchartBed
  """
  Generate a barChart bed6+5 file from a matrix, meta data, and coordinates.
+--- kent/src/hg/lib/straw/makefile
++++ kent/src/hg/lib/straw/makefile
+@@ -3,8 +3,8 @@
+ straw: straw.o cStraw.o
+ 	ld -r -o ../straw.o straw.o cStraw.o
+ straw.o: straw.cpp straw.h
+-	${CXX} straw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o straw.o
++	${CXX} straw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o straw.o -I ${PREFIX}/include
+ cStraw.o: cStraw.cpp straw.h
+-	${CXX} cStraw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o cStraw.o
++	${CXX} cStraw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o cStraw.o -I ${PREFIX}/include
+ clean:
+ 	rm -f straw.o cStraw.o ../straw.o
diff --git a/recipes/ucsc-axtchain/meta.yaml b/recipes/ucsc-axtchain/meta.yaml
index 0298a36b08794..72064fd875b92 100644
--- a/recipes/ucsc-axtchain/meta.yaml
+++ b/recipes/ucsc-axtchain/meta.yaml
@@ -1,7 +1,7 @@
 {% set package = "ucsc-axtchain" %}
 {% set program = "axtChain" %}
-{% set version = "377" %}
-{% set sha256 = "932f149c19641064a9cd3f2382cbb54b45a9292b8444792872d531346925d676" %}
+{% set version = "455" %}
+{% set sha256 = "e458cadad7c4a5c1b8385edafffa1b29380ac725a0c20535bf5a3bab99fe80db" %}
 
 package:
   name: "{{ package }}"
@@ -15,19 +15,22 @@ source:
 
 build:
   skip: True  # [osx]
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(package, max_pin=None) }}
 
 requirements:
   build:
     - make
     - {{ compiler('c') }}
+    - binutils >=2.32  # https://wiki.gentoo.org/wiki/Project:Toolchain/Binutils_2.32_upgrade_notes/elfutils_0.175:_unable_to_initialize_decompress_status_for_section_.debug_info
+    - {{ compiler('cxx') }}
   host:
     - libpng
     - libuuid
     - mysql-connector-c
     - openssl
     - zlib
-
   run:
     - libpng
     - libuuid
diff --git a/recipes/ucsc-axttopsl/include.patch b/recipes/ucsc-axttopsl/include.patch
index eb32b88d8f358..5404b18b5467a 100644
--- a/recipes/ucsc-axttopsl/include.patch
+++ b/recipes/ucsc-axttopsl/include.patch
@@ -1,22 +1,22 @@
 --- kent/src/inc/common.mk	2017-11-07 17:46:00.000000000 -0500
-+++ kent/src/inc/common.mk.new	2017-11-13 17:44:51.017090255 -0500
++++ kent/src/inc/common.mk	2017-11-13 17:44:51.017090255 -0500
 @@ -17,7 +17,7 @@
  endif
- 
+
  HG_DEFS=-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_${MACHTYPE}
 -HG_INC+=-I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I$(kentSrc)/htslib
 +HG_INC+=-I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I$(kentSrc)/htslib -I ${PREFIX}/include
- 
+
  # to check for Mac OSX Darwin specifics:
  UNAME_S := $(shell uname -s)
---- kent/src/utils/bedJoinTabOffset	2018-06-06 02:23:56.000000000 +0200
-+++ kent/src/utils/bedJoinTabOffset	2018-06-06 02:23:56.000000000 +0200
-@@ -1,4 +1,4 @@
--#!/usr/bin/env python2.7
-+#!/usr/bin/env python
- 
- import logging, sys, optparse, string
- from collections import defaultdict
+--- kent/src/inc/common.mk	2022-10-25 12:00:00.000000000 +0100
++++ kent/src/inc/common.mk	2022-10-25 12:00:00.000000000 +0100
+@@ -147,4 +147,4 @@
+-       L+=${PREFIX}/lib/libssl.a ${PREFIX}/lib/libcrypto.a -ldl
++       L+=${PREFIX}/lib/libssl.so ${PREFIX}/lib/libcrypto.so -ldl
+    else
+      ifneq ($(wildcard /opt/local/lib/libssl.a),)
+          L+=/opt/local/lib/libssl.a
 --- kent/src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed	2018-06-06 02:23:56.000000000 +0200
 +++ kent/src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed	2018-06-06 02:23:56.000000000 +0200
 @@ -1,4 +1,4 @@
@@ -25,3 +25,16 @@
  # expMatrixToBarchartBed
  """
  Generate a barChart bed6+5 file from a matrix, meta data, and coordinates.
+--- kent/src/hg/lib/straw/makefile
++++ kent/src/hg/lib/straw/makefile
+@@ -3,8 +3,8 @@
+ straw: straw.o cStraw.o
+ 	ld -r -o ../straw.o straw.o cStraw.o
+ straw.o: straw.cpp straw.h
+-	${CXX} straw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o straw.o
++	${CXX} straw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o straw.o -I ${PREFIX}/include
+ cStraw.o: cStraw.cpp straw.h
+-	${CXX} cStraw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o cStraw.o
++	${CXX} cStraw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o cStraw.o -I ${PREFIX}/include
+ clean:
+ 	rm -f straw.o cStraw.o ../straw.o
diff --git a/recipes/ucsc-axttopsl/meta.yaml b/recipes/ucsc-axttopsl/meta.yaml
index 8fd5324f934ef..d3c5108e5d1c7 100644
--- a/recipes/ucsc-axttopsl/meta.yaml
+++ b/recipes/ucsc-axttopsl/meta.yaml
@@ -1,7 +1,7 @@
 {% set package = "ucsc-axttopsl" %}
 {% set program = "axtToPsl" %}
-{% set version = "377" %}
-{% set sha256 = "932f149c19641064a9cd3f2382cbb54b45a9292b8444792872d531346925d676" %}
+{% set version = "455" %}
+{% set sha256 = "e458cadad7c4a5c1b8385edafffa1b29380ac725a0c20535bf5a3bab99fe80db" %}
 
 package:
   name: "{{ package }}"
@@ -15,19 +15,22 @@ source:
 
 build:
   skip: True  # [osx]
-  number: 2
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(package, max_pin=None) }}
 
 requirements:
   build:
     - make
     - {{ compiler('c') }}
+    - binutils >=2.32  # https://wiki.gentoo.org/wiki/Project:Toolchain/Binutils_2.32_upgrade_notes/elfutils_0.175:_unable_to_initialize_decompress_status_for_section_.debug_info
+    - {{ compiler('cxx') }}
   host:
     - libpng
     - libuuid
     - mysql-connector-c
     - openssl
     - zlib
-
   run:
     - libpng
     - libuuid
diff --git a/recipes/ucsc-bedclip/build.sh b/recipes/ucsc-bedclip/build.sh
index af41c472a9323..a0d9457e75286 100644
--- a/recipes/ucsc-bedclip/build.sh
+++ b/recipes/ucsc-bedclip/build.sh
@@ -1,8 +1,17 @@
 #!/bin/bash
-mkdir -p "$PREFIX/bin"
-export MACHTYPE=x86_64
+
+if [ $(arch) = "aarch64" ]
+then
+    export CFLAGS+=" -O3 "
+    export CPPFLAGS+=" -O3 "
+else
+    export MACHTYPE=x86_64
+fi
+
 export BINDIR=$(pwd)/bin
 export L="${LDFLAGS}"
+
+mkdir -p "$PREFIX/bin"
 mkdir -p "$BINDIR"
 (cd kent/src/lib && make)
 (cd kent/src/htslib && make)
diff --git a/recipes/ucsc-bedclip/conda_build_config.yaml b/recipes/ucsc-bedclip/conda_build_config.yaml
new file mode 100644
index 0000000000000..d8d0c3f0dc913
--- /dev/null
+++ b/recipes/ucsc-bedclip/conda_build_config.yaml
@@ -0,0 +1,2 @@
+c_compiler_version:
+  - 8
diff --git a/recipes/ucsc-bedclip/meta.yaml b/recipes/ucsc-bedclip/meta.yaml
index 68be7e4c5b546..b985207becc8a 100644
--- a/recipes/ucsc-bedclip/meta.yaml
+++ b/recipes/ucsc-bedclip/meta.yaml
@@ -12,10 +12,13 @@ source:
   sha256: "{{ sha256 }}"
   patches:
     - "include.patch"
+    - "patch1.patch"
 
 build:
   skip: True  # [osx]
-  number: 2
+  number: 4
+  run_exports:
+    - {{ pin_subpackage("ucsc-bedclip", max_pin=None) }}
 
 requirements:
   build:
@@ -27,7 +30,6 @@ requirements:
     - mysql-connector-c
     - openssl
     - zlib
-
   run:
     - libpng
     - libuuid
@@ -40,6 +42,10 @@ test:
     # just check for existence, because the individual packages have no unified behavior
     - which {{ program }}
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+
 about:
   home: "http://hgdownload.cse.ucsc.edu/admin/exe/"
   license: "varies; see http://genome.ucsc.edu/license"
diff --git a/recipes/ucsc-bedclip/patch1.patch b/recipes/ucsc-bedclip/patch1.patch
new file mode 100644
index 0000000000000..483b0342a43da
--- /dev/null
+++ b/recipes/ucsc-bedclip/patch1.patch
@@ -0,0 +1,19 @@
+--- userApps/kent/src/lib/htmshell.c.old	2022-10-28 08:32:08.344445121 +0000
++++ userApps/kent/src/lib/htmshell.c	2022-10-28 08:32:31.708262420 +0000
+@@ -711,11 +711,11 @@
+ puts("Status: 400\r");
+ puts("Content-Type: text/plain; charset=UTF-8\r");
+ puts("\r");
+-if (format != NULL && args != NULL)
+-    {
+-    vfprintf(stdout, format, args);
+-    fprintf(stdout, "\n");
+-    }
++if (format != NULL)
++    {
++    vfprintf(stdout, format, args);
++    fprintf(stdout, "\n");
++    }
+ exit(-1);
+ }
+ 
diff --git a/recipes/ucsc-bedgraphtobigwig/meta.yaml b/recipes/ucsc-bedgraphtobigwig/meta.yaml
index 96ba38c44d3e8..9aec6cf66f7a4 100644
--- a/recipes/ucsc-bedgraphtobigwig/meta.yaml
+++ b/recipes/ucsc-bedgraphtobigwig/meta.yaml
@@ -1,7 +1,7 @@
 {% set package = "ucsc-bedgraphtobigwig" %}
 {% set program = "bedGraphToBigWig" %}
-{% set version = "445" %}
-{% set sha256 = "c7abb5db6a5e16a79aefcee849d2b59dbc71ee112ca1e41fea0afb25229cf56c" %}
+{% set version = "455" %}
+{% set sha256 = "e458cadad7c4a5c1b8385edafffa1b29380ac725a0c20535bf5a3bab99fe80db" %}
 
 package:
   name: "{{ package }}"
@@ -12,9 +12,12 @@ source:
   sha256: "{{ sha256 }}"
   patches:
     - "include.patch"
+    - "patch1.patch"
 
 build:
-  number: 0
+  number: 1
+  run_exports:
+    - {{ pin_subpackage(package, max_pin=None) }}
 
 requirements:
   build:
@@ -38,6 +41,10 @@ test:
     # just check for existence, because the individual packages have no unified behavior
     - which {{ program }}
 
+extra:
+  additional-platforms:
+    - linux-aarch64
+
 about:
   home: "http://hgdownload.cse.ucsc.edu/admin/exe/"
   license: "varies; see http://genome.ucsc.edu/license"
diff --git a/recipes/ucsc-bedgraphtobigwig/patch1.patch b/recipes/ucsc-bedgraphtobigwig/patch1.patch
new file mode 100644
index 0000000000000..483b0342a43da
--- /dev/null
+++ b/recipes/ucsc-bedgraphtobigwig/patch1.patch
@@ -0,0 +1,19 @@
+--- userApps/kent/src/lib/htmshell.c.old	2022-10-28 08:32:08.344445121 +0000
++++ userApps/kent/src/lib/htmshell.c	2022-10-28 08:32:31.708262420 +0000
+@@ -711,11 +711,11 @@
+ puts("Status: 400\r");
+ puts("Content-Type: text/plain; charset=UTF-8\r");
+ puts("\r");
+-if (format != NULL && args != NULL)
+-    {
+-    vfprintf(stdout, format, args);
+-    fprintf(stdout, "\n");
+-    }
++if (format != NULL)
++    {
++    vfprintf(stdout, format, args);
++    fprintf(stdout, "\n");
++    }
+ exit(-1);
+ }
+ 
diff --git a/recipes/ucsc-bedtobigbed/htmshell.patch b/recipes/ucsc-bedtobigbed/htmshell.patch
new file mode 100644
index 0000000000000..1e6f87375ed01
--- /dev/null
+++ b/recipes/ucsc-bedtobigbed/htmshell.patch
@@ -0,0 +1,11 @@
+--- kent/src/lib/htmshell.c	2024-03-27 10:56:44.493892141 +0200
++++ kent/src/lib/htmshell.c	2024-03-27 10:57:01.073792396 +0200
+@@ -713,7 +713,7 @@
+ puts("Status: 400\r");
+ puts("Content-Type: text/plain; charset=UTF-8\r");
+ puts("\r");
+-if (format != NULL && args != NULL)
++if (format != NULL)
+     {
+     vfprintf(stdout, format, args);
+     fprintf(stdout, "\n");
diff --git a/recipes/ucsc-bedtobigbed/meta.yaml b/recipes/ucsc-bedtobigbed/meta.yaml
index 8006d0ba56728..dc6ece24ed64b 100644
--- a/recipes/ucsc-bedtobigbed/meta.yaml
+++ b/recipes/ucsc-bedtobigbed/meta.yaml
@@ -12,13 +12,16 @@ source:
   sha256: {{ sha256 }}
   patches:
     - include.patch
+    - htmshell.patch
 
 build:
-  number: 0
+  number: 1
   skip: True # [osx]
   ignore_run_exports:
     - libpng
     - libuuid
+  run_exports:
+    - {{ pin_subpackage(package, max_pin=None) }}
 
 requirements:
   build:
@@ -48,3 +51,7 @@ about:
   home: "http://hgdownload.cse.ucsc.edu/admin/exe/"
   license: "varies; see http://genome.ucsc.edu/license"
   summary: "Convert bed file to bigBed. (bbi version: 4)"
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/ucsc-bigwigsummary/build.sh b/recipes/ucsc-bigwigsummary/build.sh
index 6f51d7e922ae0..bc10870454d00 100644
--- a/recipes/ucsc-bigwigsummary/build.sh
+++ b/recipes/ucsc-bigwigsummary/build.sh
@@ -1,13 +1,13 @@
 #!/bin/bash
 mkdir -p "$PREFIX/bin"
-export MACHTYPE=x86_64
+export MACHTYPE=$(uname -m)
 export BINDIR=$(pwd)/bin
 export L="${LDFLAGS}"
 mkdir -p "$BINDIR"
-(cd kent/src/lib && make)
-(cd kent/src/htslib && make)
-(cd kent/src/jkOwnLib && make)
-(cd kent/src/hg/lib && make)
-(cd kent/src/utils/bigWigSummary && make)
+(cd kent/src/lib && make -j ${CPU_COUNT})
+(cd kent/src/htslib && make -j ${CPU_COUNT})
+(cd kent/src/jkOwnLib && make -j ${CPU_COUNT})
+(cd kent/src/hg/lib && make -j ${CPU_COUNT})
+(cd kent/src/utils/bigWigSummary && make -j ${CPU_COUNT})
 cp bin/bigWigSummary "$PREFIX/bin"
 chmod +x "$PREFIX/bin/bigWigSummary"
diff --git a/recipes/ucsc-bigwigsummary/htmshell.patch b/recipes/ucsc-bigwigsummary/htmshell.patch
new file mode 100644
index 0000000000000..1e6f87375ed01
--- /dev/null
+++ b/recipes/ucsc-bigwigsummary/htmshell.patch
@@ -0,0 +1,11 @@
+--- kent/src/lib/htmshell.c	2024-03-27 10:56:44.493892141 +0200
++++ kent/src/lib/htmshell.c	2024-03-27 10:57:01.073792396 +0200
+@@ -713,7 +713,7 @@
+ puts("Status: 400\r");
+ puts("Content-Type: text/plain; charset=UTF-8\r");
+ puts("\r");
+-if (format != NULL && args != NULL)
++if (format != NULL)
+     {
+     vfprintf(stdout, format, args);
+     fprintf(stdout, "\n");
diff --git a/recipes/ucsc-bigwigsummary/meta.yaml b/recipes/ucsc-bigwigsummary/meta.yaml
index 1f60c5321b8a9..ca2ca18d6646b 100644
--- a/recipes/ucsc-bigwigsummary/meta.yaml
+++ b/recipes/ucsc-bigwigsummary/meta.yaml
@@ -12,10 +12,13 @@ source:
   sha256: {{ sha256 }}
   patches:
     - include.patch
+    - htmshell.patch
 
 build:
-  number: 0
+  number: 1
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage(package|lower, max_pin=None) }}
 
 requirements:
   build:
@@ -45,3 +48,7 @@ about:
   home: "http://hgdownload.cse.ucsc.edu/admin/exe/"
   license: "varies; see http://genome.ucsc.edu/license"
   summary: "Extract summary information from a bigWig file."
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/ucsc-bigwigtowig/build.sh b/recipes/ucsc-bigwigtowig/build.sh
index 41c737003ef7d..a437ceb086a47 100644
--- a/recipes/ucsc-bigwigtowig/build.sh
+++ b/recipes/ucsc-bigwigtowig/build.sh
@@ -1,13 +1,13 @@
 #!/bin/bash
 mkdir -p "$PREFIX/bin"
-export MACHTYPE=x86_64
+export MACHTYPE=$(uname -m)
 export BINDIR=$(pwd)/bin
 export L="${LDFLAGS}"
 mkdir -p "$BINDIR"
-(cd kent/src/lib && make)
-(cd kent/src/htslib && make)
-(cd kent/src/jkOwnLib && make)
-(cd kent/src/hg/lib && make)
-(cd kent/src/utils/bigWigToWig && make)
+(cd kent/src/lib && make -j ${CPU_COUNT})
+(cd kent/src/htslib && make -j ${CPU_COUNT})
+(cd kent/src/jkOwnLib && make -j ${CPU_COUNT})
+(cd kent/src/hg/lib && make -j ${CPU_COUNT})
+(cd kent/src/utils/bigWigToWig && make -j ${CPU_COUNT})
 cp bin/bigWigToWig "$PREFIX/bin"
 chmod +x "$PREFIX/bin/bigWigToWig"
diff --git a/recipes/ucsc-bigwigtowig/htmshell.patch b/recipes/ucsc-bigwigtowig/htmshell.patch
new file mode 100644
index 0000000000000..1e6f87375ed01
--- /dev/null
+++ b/recipes/ucsc-bigwigtowig/htmshell.patch
@@ -0,0 +1,11 @@
+--- kent/src/lib/htmshell.c	2024-03-27 10:56:44.493892141 +0200
++++ kent/src/lib/htmshell.c	2024-03-27 10:57:01.073792396 +0200
+@@ -713,7 +713,7 @@
+ puts("Status: 400\r");
+ puts("Content-Type: text/plain; charset=UTF-8\r");
+ puts("\r");
+-if (format != NULL && args != NULL)
++if (format != NULL)
+     {
+     vfprintf(stdout, format, args);
+     fprintf(stdout, "\n");
diff --git a/recipes/ucsc-bigwigtowig/meta.yaml b/recipes/ucsc-bigwigtowig/meta.yaml
index 72927f2fed2f3..31e4bcee47493 100644
--- a/recipes/ucsc-bigwigtowig/meta.yaml
+++ b/recipes/ucsc-bigwigtowig/meta.yaml
@@ -12,10 +12,13 @@ source:
   sha256: {{ sha256 }}
   patches:
     - include.patch
+    - htmshell.patch
 
 build:
-  number: 0
+  number: 1
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage(package, max_pin="x") }}
 
 requirements:
   build:
@@ -45,3 +48,7 @@ about:
   home: "http://hgdownload.cse.ucsc.edu/admin/exe/"
   license: "varies; see http://genome.ucsc.edu/license"
   summary: "Convert bigWig to wig. This will keep more of the same structure of the original wig than bigWigToBedGraph does, but still will break up large stepped sections into smaller ones."
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/ucsc-cell-browser/meta.yaml b/recipes/ucsc-cell-browser/meta.yaml
index b2e4b40352f61..68c277405ff52 100644
--- a/recipes/ucsc-cell-browser/meta.yaml
+++ b/recipes/ucsc-cell-browser/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = '1.2.3' %}
+{% set version = '1.2.6' %}
 {% set name = "cellbrowser" %}
 
 package:
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: "081d55d1ecc3701c20b1f0275915e9b472b8b71eaa9cb1de7dcba1a0cd0501b1"
+  sha256: "1a088c7ccfdd8300d59955b2b9c9e2633c973dad9fb90006f6b726aed0354877"
 
 build:
   number: 0
@@ -25,14 +25,16 @@ build:
     - cbGenes = cellbrowser.genes:cbGenesCli
     - cbHub = cellbrowser.hubmaker:cbHubCli
   noarch: python
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('ucsc-cell-browser', max_pin="x") }}
 
 requirements:
     host:
-        - python >=3.6
+        - python >=3.6,<3.12
         - pip
     run:
-        - python >=3.6
+        - python >=3.6,<3.12
         - numpy
         - anndata
 
@@ -53,7 +55,14 @@ test:
         - which cbGenes
 
 about:
-  home: http://cells.ucsc.edu
-  license: GPL
+  home: https://cells.ucsc.edu
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
   summary: A browser for single-cell data, main site at http://cells.ucsc.edu. UCSC Cellbrowser, an interactive browser for single cell data. Includes importers and basic pipelines for text files, Seurat, Scanpy and Cellranger. All Javascript - does not require a server backend.
+  doc_url: https://cellbrowser.readthedocs.io/en/master/
+  dev_url: https://github.com/maximilianh/cellBrowser
+
+extra:
+  identifiers:
+    - doi:10.1093/bioinformatics/btab503
diff --git a/recipes/ucsc-chainantirepeat/include.patch b/recipes/ucsc-chainantirepeat/include.patch
index eb32b88d8f358..5404b18b5467a 100644
--- a/recipes/ucsc-chainantirepeat/include.patch
+++ b/recipes/ucsc-chainantirepeat/include.patch
@@ -1,22 +1,22 @@
 --- kent/src/inc/common.mk	2017-11-07 17:46:00.000000000 -0500
-+++ kent/src/inc/common.mk.new	2017-11-13 17:44:51.017090255 -0500
++++ kent/src/inc/common.mk	2017-11-13 17:44:51.017090255 -0500
 @@ -17,7 +17,7 @@
  endif
- 
+
  HG_DEFS=-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_${MACHTYPE}
 -HG_INC+=-I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I$(kentSrc)/htslib
 +HG_INC+=-I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I$(kentSrc)/htslib -I ${PREFIX}/include
- 
+
  # to check for Mac OSX Darwin specifics:
  UNAME_S := $(shell uname -s)
---- kent/src/utils/bedJoinTabOffset	2018-06-06 02:23:56.000000000 +0200
-+++ kent/src/utils/bedJoinTabOffset	2018-06-06 02:23:56.000000000 +0200
-@@ -1,4 +1,4 @@
--#!/usr/bin/env python2.7
-+#!/usr/bin/env python
- 
- import logging, sys, optparse, string
- from collections import defaultdict
+--- kent/src/inc/common.mk	2022-10-25 12:00:00.000000000 +0100
++++ kent/src/inc/common.mk	2022-10-25 12:00:00.000000000 +0100
+@@ -147,4 +147,4 @@
+-       L+=${PREFIX}/lib/libssl.a ${PREFIX}/lib/libcrypto.a -ldl
++       L+=${PREFIX}/lib/libssl.so ${PREFIX}/lib/libcrypto.so -ldl
+    else
+      ifneq ($(wildcard /opt/local/lib/libssl.a),)
+          L+=/opt/local/lib/libssl.a
 --- kent/src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed	2018-06-06 02:23:56.000000000 +0200
 +++ kent/src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed	2018-06-06 02:23:56.000000000 +0200
 @@ -1,4 +1,4 @@
@@ -25,3 +25,16 @@
  # expMatrixToBarchartBed
  """
  Generate a barChart bed6+5 file from a matrix, meta data, and coordinates.
+--- kent/src/hg/lib/straw/makefile
++++ kent/src/hg/lib/straw/makefile
+@@ -3,8 +3,8 @@
+ straw: straw.o cStraw.o
+ 	ld -r -o ../straw.o straw.o cStraw.o
+ straw.o: straw.cpp straw.h
+-	${CXX} straw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o straw.o
++	${CXX} straw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o straw.o -I ${PREFIX}/include
+ cStraw.o: cStraw.cpp straw.h
+-	${CXX} cStraw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o cStraw.o
++	${CXX} cStraw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o cStraw.o -I ${PREFIX}/include
+ clean:
+ 	rm -f straw.o cStraw.o ../straw.o
diff --git a/recipes/ucsc-chainantirepeat/meta.yaml b/recipes/ucsc-chainantirepeat/meta.yaml
index 8d2bec89f3e46..c08a1b271ba4a 100644
--- a/recipes/ucsc-chainantirepeat/meta.yaml
+++ b/recipes/ucsc-chainantirepeat/meta.yaml
@@ -1,7 +1,7 @@
 {% set package = "ucsc-chainantirepeat" %}
 {% set program = "chainAntiRepeat" %}
-{% set version = "377" %}
-{% set sha256 = "932f149c19641064a9cd3f2382cbb54b45a9292b8444792872d531346925d676" %}
+{% set version = "455" %}
+{% set sha256 = "e458cadad7c4a5c1b8385edafffa1b29380ac725a0c20535bf5a3bab99fe80db" %}
 
 package:
   name: "{{ package }}"
@@ -15,12 +15,16 @@ source:
 
 build:
   skip: True  # [osx]
-  number: 4
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(package, max_pin=None) }}
 
 requirements:
   build:
     - make
     - {{ compiler('c') }}
+    - binutils >=2.32  # https://wiki.gentoo.org/wiki/Project:Toolchain/Binutils_2.32_upgrade_notes/elfutils_0.175:_unable_to_initialize_decompress_status_for_section_.debug_info
+    - {{ compiler('cxx') }}
   host:
     - libpng
     - libuuid
diff --git a/recipes/ucsc-chaincleaner/build.sh b/recipes/ucsc-chaincleaner/build.sh
new file mode 100644
index 0000000000000..0885639b0aa13
--- /dev/null
+++ b/recipes/ucsc-chaincleaner/build.sh
@@ -0,0 +1,13 @@
+#!/bin/bash
+mkdir -p "$PREFIX/bin"
+export MACHTYPE=x86_64
+export BINDIR=$(pwd)/bin
+export L="${LDFLAGS}"
+mkdir -p "$BINDIR"
+(cd kent/src/lib && make)
+(cd kent/src/htslib && make)
+(cd kent/src/jkOwnLib && make)
+(cd kent/src/hg/lib && make)
+(cd kent/src/hg/mouseStuff/chainCleaner && make)
+cp bin/chainCleaner "$PREFIX/bin"
+chmod +x "$PREFIX/bin/chainCleaner"
diff --git a/recipes/ucsc-chaincleaner/include.patch b/recipes/ucsc-chaincleaner/include.patch
new file mode 100644
index 0000000000000..e4831ef2dea13
--- /dev/null
+++ b/recipes/ucsc-chaincleaner/include.patch
@@ -0,0 +1,40 @@
+--- kent/src/inc/common.mk	2017-11-07 17:46:00.000000000 -0500
++++ kent/src/inc/common.mk	2017-11-13 17:44:51.017090255 -0500
+@@ -17,7 +17,7 @@
+ endif
+ 
+ HG_DEFS=-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_${MACHTYPE}
+-HG_INC+=-I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I$(kentSrc)/htslib
++HG_INC+=-I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I$(kentSrc)/htslib -I ${PREFIX}/include
+ 
+ # to check for Mac OSX Darwin specifics:
+ UNAME_S := $(shell uname -s)
+--- kent/src/inc/common.mk	2022-10-25 12:00:00.000000000 +0100
++++ kent/src/inc/common.mk	2022-10-25 12:00:00.000000000 +0100
+@@ -147,4 +147,4 @@
+-       L+=${PREFIX}/lib/libssl.a ${PREFIX}/lib/libcrypto.a -ldl
++       L+=${PREFIX}/lib/libssl.so ${PREFIX}/lib/libcrypto.so -ldl
+    else
+      ifneq ($(wildcard /opt/local/lib/libssl.a),)
+          L+=/opt/local/lib/libssl.a
+--- kent/src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed	2018-06-06 02:23:56.000000000 +0200
++++ kent/src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed	2018-06-06 02:23:56.000000000 +0200
+@@ -1,4 +1,4 @@
+-#!/usr/bin/env python2.7
++#!/usr/bin/env python
+ # expMatrixToBarchartBed
+ """
+ Generate a barChart bed6+5 file from a matrix, meta data, and coordinates.
+--- kent/src/hg/lib/straw/makefile
++++ kent/src/hg/lib/straw/makefile
+@@ -3,8 +3,8 @@
+ straw: straw.o cStraw.o
+ 	ld -r -o ../straw.o straw.o cStraw.o
+ straw.o: straw.cpp straw.h
+-	${CXX} straw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o straw.o
++	${CXX} straw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o straw.o -I ${PREFIX}/include
+ cStraw.o: cStraw.cpp straw.h
+-	${CXX} cStraw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o cStraw.o
++	${CXX} cStraw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o cStraw.o -I ${PREFIX}/include
+ clean:
+ 	rm -f straw.o cStraw.o ../straw.o
diff --git a/recipes/ucsc-chaincleaner/meta.yaml b/recipes/ucsc-chaincleaner/meta.yaml
new file mode 100644
index 0000000000000..4417d84ba8197
--- /dev/null
+++ b/recipes/ucsc-chaincleaner/meta.yaml
@@ -0,0 +1,49 @@
+{% set package = "ucsc-chaincleaner" %}
+{% set program = "chainCleaner" %}
+{% set version = "455" %}
+{% set sha256 = "e458cadad7c4a5c1b8385edafffa1b29380ac725a0c20535bf5a3bab99fe80db" %}
+
+package:
+  name: "{{ package }}"
+  version: "{{ version }}"
+
+source:
+  url: "http://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v{{ version }}.src.tgz"
+  sha256: "{{ sha256 }}"
+  patches:
+    - "include.patch"
+
+build:
+  skip: True  # [osx]
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("ucsc-chaincleaner", max_pin=None) }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('c') }}
+    - binutils >=2.32  # https://wiki.gentoo.org/wiki/Project:Toolchain/Binutils_2.32_upgrade_notes/elfutils_0.175:_unable_to_initialize_decompress_status_for_section_.debug_info
+    - {{ compiler('cxx') }}
+  host:
+    - libpng
+    - libuuid
+    - mysql-connector-c
+    - openssl
+    - zlib
+  run:
+    - libpng
+    - libuuid
+    - mysql-connector-c
+    - openssl
+    - zlib
+
+test:
+  commands:
+    # just check for existence, because the individual packages have no unified behavior
+    - which {{ program }}
+
+about:
+  home: "http://hgdownload.cse.ucsc.edu/admin/exe/"
+  license: "varies; see http://genome.ucsc.edu/license"
+  summary: "Remove chain-breaking alignments from chains that break nested chains."
diff --git a/recipes/ucsc-chaincleaner/run_test.sh b/recipes/ucsc-chaincleaner/run_test.sh
new file mode 100644
index 0000000000000..e2ce68c8a3c0e
--- /dev/null
+++ b/recipes/ucsc-chaincleaner/run_test.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+chainCleaner 2> /dev/null || [[ "$?" == 255 ]]
diff --git a/recipes/ucsc-chainfilter/include.patch b/recipes/ucsc-chainfilter/include.patch
index eb32b88d8f358..5404b18b5467a 100644
--- a/recipes/ucsc-chainfilter/include.patch
+++ b/recipes/ucsc-chainfilter/include.patch
@@ -1,22 +1,22 @@
 --- kent/src/inc/common.mk	2017-11-07 17:46:00.000000000 -0500
-+++ kent/src/inc/common.mk.new	2017-11-13 17:44:51.017090255 -0500
++++ kent/src/inc/common.mk	2017-11-13 17:44:51.017090255 -0500
 @@ -17,7 +17,7 @@
  endif
- 
+
  HG_DEFS=-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_${MACHTYPE}
 -HG_INC+=-I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I$(kentSrc)/htslib
 +HG_INC+=-I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I$(kentSrc)/htslib -I ${PREFIX}/include
- 
+
  # to check for Mac OSX Darwin specifics:
  UNAME_S := $(shell uname -s)
---- kent/src/utils/bedJoinTabOffset	2018-06-06 02:23:56.000000000 +0200
-+++ kent/src/utils/bedJoinTabOffset	2018-06-06 02:23:56.000000000 +0200
-@@ -1,4 +1,4 @@
--#!/usr/bin/env python2.7
-+#!/usr/bin/env python
- 
- import logging, sys, optparse, string
- from collections import defaultdict
+--- kent/src/inc/common.mk	2022-10-25 12:00:00.000000000 +0100
++++ kent/src/inc/common.mk	2022-10-25 12:00:00.000000000 +0100
+@@ -147,4 +147,4 @@
+-       L+=${PREFIX}/lib/libssl.a ${PREFIX}/lib/libcrypto.a -ldl
++       L+=${PREFIX}/lib/libssl.so ${PREFIX}/lib/libcrypto.so -ldl
+    else
+      ifneq ($(wildcard /opt/local/lib/libssl.a),)
+          L+=/opt/local/lib/libssl.a
 --- kent/src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed	2018-06-06 02:23:56.000000000 +0200
 +++ kent/src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed	2018-06-06 02:23:56.000000000 +0200
 @@ -1,4 +1,4 @@
@@ -25,3 +25,16 @@
  # expMatrixToBarchartBed
  """
  Generate a barChart bed6+5 file from a matrix, meta data, and coordinates.
+--- kent/src/hg/lib/straw/makefile
++++ kent/src/hg/lib/straw/makefile
+@@ -3,8 +3,8 @@
+ straw: straw.o cStraw.o
+ 	ld -r -o ../straw.o straw.o cStraw.o
+ straw.o: straw.cpp straw.h
+-	${CXX} straw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o straw.o
++	${CXX} straw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o straw.o -I ${PREFIX}/include
+ cStraw.o: cStraw.cpp straw.h
+-	${CXX} cStraw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o cStraw.o
++	${CXX} cStraw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o cStraw.o -I ${PREFIX}/include
+ clean:
+ 	rm -f straw.o cStraw.o ../straw.o
diff --git a/recipes/ucsc-chainfilter/meta.yaml b/recipes/ucsc-chainfilter/meta.yaml
index 35fcbefe4e89e..eb41f55eb619f 100644
--- a/recipes/ucsc-chainfilter/meta.yaml
+++ b/recipes/ucsc-chainfilter/meta.yaml
@@ -1,7 +1,7 @@
 {% set package = "ucsc-chainfilter" %}
 {% set program = "chainFilter" %}
-{% set version = "377" %}
-{% set sha256 = "932f149c19641064a9cd3f2382cbb54b45a9292b8444792872d531346925d676" %}
+{% set version = "455" %}
+{% set sha256 = "e458cadad7c4a5c1b8385edafffa1b29380ac725a0c20535bf5a3bab99fe80db" %}
 
 package:
   name: "{{ package }}"
@@ -15,12 +15,16 @@ source:
 
 build:
   skip: True  # [osx]
-  number: 4
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(package, max_pin=None) }}
 
 requirements:
   build:
     - make
     - {{ compiler('c') }}
+    - binutils >=2.32  # https://wiki.gentoo.org/wiki/Project:Toolchain/Binutils_2.32_upgrade_notes/elfutils_0.175:_unable_to_initialize_decompress_status_for_section_.debug_info
+    - {{ compiler('cxx') }}
   host:
     - libpng
     - libuuid
diff --git a/recipes/ucsc-chainmergesort/include.patch b/recipes/ucsc-chainmergesort/include.patch
index eb32b88d8f358..5404b18b5467a 100644
--- a/recipes/ucsc-chainmergesort/include.patch
+++ b/recipes/ucsc-chainmergesort/include.patch
@@ -1,22 +1,22 @@
 --- kent/src/inc/common.mk	2017-11-07 17:46:00.000000000 -0500
-+++ kent/src/inc/common.mk.new	2017-11-13 17:44:51.017090255 -0500
++++ kent/src/inc/common.mk	2017-11-13 17:44:51.017090255 -0500
 @@ -17,7 +17,7 @@
  endif
- 
+
  HG_DEFS=-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_${MACHTYPE}
 -HG_INC+=-I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I$(kentSrc)/htslib
 +HG_INC+=-I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I$(kentSrc)/htslib -I ${PREFIX}/include
- 
+
  # to check for Mac OSX Darwin specifics:
  UNAME_S := $(shell uname -s)
---- kent/src/utils/bedJoinTabOffset	2018-06-06 02:23:56.000000000 +0200
-+++ kent/src/utils/bedJoinTabOffset	2018-06-06 02:23:56.000000000 +0200
-@@ -1,4 +1,4 @@
--#!/usr/bin/env python2.7
-+#!/usr/bin/env python
- 
- import logging, sys, optparse, string
- from collections import defaultdict
+--- kent/src/inc/common.mk	2022-10-25 12:00:00.000000000 +0100
++++ kent/src/inc/common.mk	2022-10-25 12:00:00.000000000 +0100
+@@ -147,4 +147,4 @@
+-       L+=${PREFIX}/lib/libssl.a ${PREFIX}/lib/libcrypto.a -ldl
++       L+=${PREFIX}/lib/libssl.so ${PREFIX}/lib/libcrypto.so -ldl
+    else
+      ifneq ($(wildcard /opt/local/lib/libssl.a),)
+          L+=/opt/local/lib/libssl.a
 --- kent/src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed	2018-06-06 02:23:56.000000000 +0200
 +++ kent/src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed	2018-06-06 02:23:56.000000000 +0200
 @@ -1,4 +1,4 @@
@@ -25,3 +25,16 @@
  # expMatrixToBarchartBed
  """
  Generate a barChart bed6+5 file from a matrix, meta data, and coordinates.
+--- kent/src/hg/lib/straw/makefile
++++ kent/src/hg/lib/straw/makefile
+@@ -3,8 +3,8 @@
+ straw: straw.o cStraw.o
+ 	ld -r -o ../straw.o straw.o cStraw.o
+ straw.o: straw.cpp straw.h
+-	${CXX} straw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o straw.o
++	${CXX} straw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o straw.o -I ${PREFIX}/include
+ cStraw.o: cStraw.cpp straw.h
+-	${CXX} cStraw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o cStraw.o
++	${CXX} cStraw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o cStraw.o -I ${PREFIX}/include
+ clean:
+ 	rm -f straw.o cStraw.o ../straw.o
diff --git a/recipes/ucsc-chainmergesort/meta.yaml b/recipes/ucsc-chainmergesort/meta.yaml
index 9cda28af06190..a8116c2079423 100644
--- a/recipes/ucsc-chainmergesort/meta.yaml
+++ b/recipes/ucsc-chainmergesort/meta.yaml
@@ -1,7 +1,7 @@
 {% set package = "ucsc-chainmergesort" %}
 {% set program = "chainMergeSort" %}
-{% set version = "377" %}
-{% set sha256 = "932f149c19641064a9cd3f2382cbb54b45a9292b8444792872d531346925d676" %}
+{% set version = "455" %}
+{% set sha256 = "e458cadad7c4a5c1b8385edafffa1b29380ac725a0c20535bf5a3bab99fe80db" %}
 
 package:
   name: "{{ package }}"
@@ -15,12 +15,16 @@ source:
 
 build:
   skip: True  # [osx]
-  number: 4
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(package, max_pin=None) }}
 
 requirements:
   build:
     - make
     - {{ compiler('c') }}
+    - binutils >=2.32  # https://wiki.gentoo.org/wiki/Project:Toolchain/Binutils_2.32_upgrade_notes/elfutils_0.175:_unable_to_initialize_decompress_status_for_section_.debug_info
+    - {{ compiler('cxx') }}
   host:
     - libpng
     - libuuid
diff --git a/recipes/ucsc-chainnet/include.patch b/recipes/ucsc-chainnet/include.patch
index eb32b88d8f358..5404b18b5467a 100644
--- a/recipes/ucsc-chainnet/include.patch
+++ b/recipes/ucsc-chainnet/include.patch
@@ -1,22 +1,22 @@
 --- kent/src/inc/common.mk	2017-11-07 17:46:00.000000000 -0500
-+++ kent/src/inc/common.mk.new	2017-11-13 17:44:51.017090255 -0500
++++ kent/src/inc/common.mk	2017-11-13 17:44:51.017090255 -0500
 @@ -17,7 +17,7 @@
  endif
- 
+
  HG_DEFS=-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_${MACHTYPE}
 -HG_INC+=-I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I$(kentSrc)/htslib
 +HG_INC+=-I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I$(kentSrc)/htslib -I ${PREFIX}/include
- 
+
  # to check for Mac OSX Darwin specifics:
  UNAME_S := $(shell uname -s)
---- kent/src/utils/bedJoinTabOffset	2018-06-06 02:23:56.000000000 +0200
-+++ kent/src/utils/bedJoinTabOffset	2018-06-06 02:23:56.000000000 +0200
-@@ -1,4 +1,4 @@
--#!/usr/bin/env python2.7
-+#!/usr/bin/env python
- 
- import logging, sys, optparse, string
- from collections import defaultdict
+--- kent/src/inc/common.mk	2022-10-25 12:00:00.000000000 +0100
++++ kent/src/inc/common.mk	2022-10-25 12:00:00.000000000 +0100
+@@ -147,4 +147,4 @@
+-       L+=${PREFIX}/lib/libssl.a ${PREFIX}/lib/libcrypto.a -ldl
++       L+=${PREFIX}/lib/libssl.so ${PREFIX}/lib/libcrypto.so -ldl
+    else
+      ifneq ($(wildcard /opt/local/lib/libssl.a),)
+          L+=/opt/local/lib/libssl.a
 --- kent/src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed	2018-06-06 02:23:56.000000000 +0200
 +++ kent/src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed	2018-06-06 02:23:56.000000000 +0200
 @@ -1,4 +1,4 @@
@@ -25,3 +25,16 @@
  # expMatrixToBarchartBed
  """
  Generate a barChart bed6+5 file from a matrix, meta data, and coordinates.
+--- kent/src/hg/lib/straw/makefile
++++ kent/src/hg/lib/straw/makefile
+@@ -3,8 +3,8 @@
+ straw: straw.o cStraw.o
+ 	ld -r -o ../straw.o straw.o cStraw.o
+ straw.o: straw.cpp straw.h
+-	${CXX} straw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o straw.o
++	${CXX} straw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o straw.o -I ${PREFIX}/include
+ cStraw.o: cStraw.cpp straw.h
+-	${CXX} cStraw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o cStraw.o
++	${CXX} cStraw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o cStraw.o -I ${PREFIX}/include
+ clean:
+ 	rm -f straw.o cStraw.o ../straw.o
diff --git a/recipes/ucsc-chainnet/meta.yaml b/recipes/ucsc-chainnet/meta.yaml
index 05a902095b4c5..070f24c45a620 100644
--- a/recipes/ucsc-chainnet/meta.yaml
+++ b/recipes/ucsc-chainnet/meta.yaml
@@ -1,7 +1,7 @@
 {% set package = "ucsc-chainnet" %}
 {% set program = "chainNet" %}
-{% set version = "377" %}
-{% set sha256 = "932f149c19641064a9cd3f2382cbb54b45a9292b8444792872d531346925d676" %}
+{% set version = "455" %}
+{% set sha256 = "e458cadad7c4a5c1b8385edafffa1b29380ac725a0c20535bf5a3bab99fe80db" %}
 
 package:
   name: "{{ package }}"
@@ -15,19 +15,22 @@ source:
 
 build:
   skip: True  # [osx]
-  number: 4
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(package, max_pin=None) }}
 
 requirements:
   build:
     - make
     - {{ compiler('c') }}
+    - binutils >=2.32  # https://wiki.gentoo.org/wiki/Project:Toolchain/Binutils_2.32_upgrade_notes/elfutils_0.175:_unable_to_initialize_decompress_status_for_section_.debug_info
+    - {{ compiler('cxx') }}
   host:
     - libpng
     - libuuid
     - mysql-connector-c
     - openssl
     - zlib
-
   run:
     - libpng
     - libuuid
diff --git a/recipes/ucsc-chainscore/build.sh b/recipes/ucsc-chainscore/build.sh
new file mode 100644
index 0000000000000..0136af36bb813
--- /dev/null
+++ b/recipes/ucsc-chainscore/build.sh
@@ -0,0 +1,13 @@
+#!/bin/bash
+mkdir -p "$PREFIX/bin"
+export MACHTYPE=x86_64
+export BINDIR=$(pwd)/bin
+export L="${LDFLAGS}"
+mkdir -p "$BINDIR"
+(cd kent/src/lib && make)
+(cd kent/src/htslib && make)
+(cd kent/src/jkOwnLib && make)
+(cd kent/src/hg/lib && make)
+(cd kent/src/hg/mouseStuff/chainScore && make)
+cp bin/chainScore "$PREFIX/bin"
+chmod +x "$PREFIX/bin/chainScore"
diff --git a/recipes/ucsc-chainscore/include.patch b/recipes/ucsc-chainscore/include.patch
new file mode 100644
index 0000000000000..e4831ef2dea13
--- /dev/null
+++ b/recipes/ucsc-chainscore/include.patch
@@ -0,0 +1,40 @@
+--- kent/src/inc/common.mk	2017-11-07 17:46:00.000000000 -0500
++++ kent/src/inc/common.mk	2017-11-13 17:44:51.017090255 -0500
+@@ -17,7 +17,7 @@
+ endif
+ 
+ HG_DEFS=-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_${MACHTYPE}
+-HG_INC+=-I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I$(kentSrc)/htslib
++HG_INC+=-I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I$(kentSrc)/htslib -I ${PREFIX}/include
+ 
+ # to check for Mac OSX Darwin specifics:
+ UNAME_S := $(shell uname -s)
+--- kent/src/inc/common.mk	2022-10-25 12:00:00.000000000 +0100
++++ kent/src/inc/common.mk	2022-10-25 12:00:00.000000000 +0100
+@@ -147,4 +147,4 @@
+-       L+=${PREFIX}/lib/libssl.a ${PREFIX}/lib/libcrypto.a -ldl
++       L+=${PREFIX}/lib/libssl.so ${PREFIX}/lib/libcrypto.so -ldl
+    else
+      ifneq ($(wildcard /opt/local/lib/libssl.a),)
+          L+=/opt/local/lib/libssl.a
+--- kent/src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed	2018-06-06 02:23:56.000000000 +0200
++++ kent/src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed	2018-06-06 02:23:56.000000000 +0200
+@@ -1,4 +1,4 @@
+-#!/usr/bin/env python2.7
++#!/usr/bin/env python
+ # expMatrixToBarchartBed
+ """
+ Generate a barChart bed6+5 file from a matrix, meta data, and coordinates.
+--- kent/src/hg/lib/straw/makefile
++++ kent/src/hg/lib/straw/makefile
+@@ -3,8 +3,8 @@
+ straw: straw.o cStraw.o
+ 	ld -r -o ../straw.o straw.o cStraw.o
+ straw.o: straw.cpp straw.h
+-	${CXX} straw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o straw.o
++	${CXX} straw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o straw.o -I ${PREFIX}/include
+ cStraw.o: cStraw.cpp straw.h
+-	${CXX} cStraw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o cStraw.o
++	${CXX} cStraw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o cStraw.o -I ${PREFIX}/include
+ clean:
+ 	rm -f straw.o cStraw.o ../straw.o
diff --git a/recipes/ucsc-chainscore/meta.yaml b/recipes/ucsc-chainscore/meta.yaml
new file mode 100644
index 0000000000000..1902cceb93c8d
--- /dev/null
+++ b/recipes/ucsc-chainscore/meta.yaml
@@ -0,0 +1,49 @@
+{% set package = "ucsc-chainscore" %}
+{% set program = "chainScore" %}
+{% set version = "455" %}
+{% set sha256 = "e458cadad7c4a5c1b8385edafffa1b29380ac725a0c20535bf5a3bab99fe80db" %}
+
+package:
+  name: "{{ package }}"
+  version: "{{ version }}"
+
+source:
+  url: "http://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v{{ version }}.src.tgz"
+  sha256: "{{ sha256 }}"
+  patches:
+    - "include.patch"
+
+build:
+  skip: True  # [osx]
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("ucsc-chainscore", max_pin=None) }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('c') }}
+    - binutils >=2.32  # https://wiki.gentoo.org/wiki/Project:Toolchain/Binutils_2.32_upgrade_notes/elfutils_0.175:_unable_to_initialize_decompress_status_for_section_.debug_info
+    - {{ compiler('cxx') }}
+  host:
+    - libpng
+    - libuuid
+    - mysql-connector-c
+    - openssl
+    - zlib
+  run:
+    - libpng
+    - libuuid
+    - mysql-connector-c
+    - openssl
+    - zlib
+
+test:
+  commands:
+    # just check for existence, because the individual packages have no unified behavior
+    - which {{ program }}
+
+about:
+  home: "http://hgdownload.cse.ucsc.edu/admin/exe/"
+  license: "varies; see http://genome.ucsc.edu/license"
+  summary: "Remove chain-breaking alignments from chains that break nested chains."
diff --git a/recipes/ucsc-chainscore/run_test.sh b/recipes/ucsc-chainscore/run_test.sh
new file mode 100644
index 0000000000000..8bbf608067e64
--- /dev/null
+++ b/recipes/ucsc-chainscore/run_test.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+chainScore 2> /dev/null || [[ "$?" == 255 ]]
diff --git a/recipes/ucsc-chainsort/include.patch b/recipes/ucsc-chainsort/include.patch
index eb32b88d8f358..e9c8621194325 100644
--- a/recipes/ucsc-chainsort/include.patch
+++ b/recipes/ucsc-chainsort/include.patch
@@ -1,22 +1,30 @@
 --- kent/src/inc/common.mk	2017-11-07 17:46:00.000000000 -0500
-+++ kent/src/inc/common.mk.new	2017-11-13 17:44:51.017090255 -0500
++++ kent/src/inc/common.mk	2017-11-13 17:44:51.017090255 -0500
 @@ -17,7 +17,7 @@
  endif
  
  HG_DEFS=-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_${MACHTYPE}
 -HG_INC+=-I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I$(kentSrc)/htslib
-+HG_INC+=-I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I$(kentSrc)/htslib -I ${PREFIX}/include
++HG_INC+=-I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I$(kentSrc)/htslib -I${PREFIX}/include
  
  # to check for Mac OSX Darwin specifics:
  UNAME_S := $(shell uname -s)
---- kent/src/utils/bedJoinTabOffset	2018-06-06 02:23:56.000000000 +0200
-+++ kent/src/utils/bedJoinTabOffset	2018-06-06 02:23:56.000000000 +0200
+--- kent/src/inc/common.mk	2022-10-25 12:00:00.000000000 +0100
++++ kent/src/inc/common.mk	2022-10-25 12:00:00.000000000 +0100
+@@ -147,4 +147,4 @@
+-       L+=${PREFIX}/lib/libssl.a ${PREFIX}/lib/libcrypto.a -ldl
++       L+=${PREFIX}/lib/libssl.so ${PREFIX}/lib/libcrypto.so -ldl
+    else
+      ifneq ($(wildcard /opt/local/lib/libssl.a),)
+          L+=/opt/local/lib/libssl.a
+--- kent/src/hg/lib/straw/makefile	2022-10-26 12:00:00.000000000 +0100
++++ kent/src/hg/lib/straw/makefile	2022-10-26 12:00:00.000000000 +0100
 @@ -1,4 +1,4 @@
--#!/usr/bin/env python2.7
-+#!/usr/bin/env python
- 
- import logging, sys, optparse, string
- from collections import defaultdict
+-KENT_INC=-I../../../inc
++KENT_INC=-I../../../inc -I${PREFIX}/include
+
+ straw: straw.o cStraw.o
+ 	ld -r -o ../straw.o straw.o cStraw.o
 --- kent/src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed	2018-06-06 02:23:56.000000000 +0200
 +++ kent/src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed	2018-06-06 02:23:56.000000000 +0200
 @@ -1,4 +1,4 @@
diff --git a/recipes/ucsc-chainsort/meta.yaml b/recipes/ucsc-chainsort/meta.yaml
index 812585c2231ec..3864af0708530 100644
--- a/recipes/ucsc-chainsort/meta.yaml
+++ b/recipes/ucsc-chainsort/meta.yaml
@@ -1,7 +1,7 @@
 {% set package = "ucsc-chainsort" %}
 {% set program = "chainSort" %}
-{% set version = "377" %}
-{% set sha256 = "932f149c19641064a9cd3f2382cbb54b45a9292b8444792872d531346925d676" %}
+{% set version = "455" %}
+{% set sha256 = "e458cadad7c4a5c1b8385edafffa1b29380ac725a0c20535bf5a3bab99fe80db" %}
 
 package:
   name: "{{ package }}"
@@ -15,19 +15,23 @@ source:
 
 build:
   skip: True  # [osx]
-  number: 4
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("ucsc-chainsort", max_pin=None) }}
 
 requirements:
   build:
     - make
     - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - binutils # [linux]
   host:
     - libpng
     - libuuid
     - mysql-connector-c
     - openssl
+    - libopenssl-static
     - zlib
-
   run:
     - libpng
     - libuuid
diff --git a/recipes/ucsc-fasomerecords/include.patch b/recipes/ucsc-fasomerecords/include.patch
index eb32b88d8f358..e4831ef2dea13 100644
--- a/recipes/ucsc-fasomerecords/include.patch
+++ b/recipes/ucsc-fasomerecords/include.patch
@@ -1,5 +1,5 @@
 --- kent/src/inc/common.mk	2017-11-07 17:46:00.000000000 -0500
-+++ kent/src/inc/common.mk.new	2017-11-13 17:44:51.017090255 -0500
++++ kent/src/inc/common.mk	2017-11-13 17:44:51.017090255 -0500
 @@ -17,7 +17,7 @@
  endif
  
@@ -9,14 +9,14 @@
  
  # to check for Mac OSX Darwin specifics:
  UNAME_S := $(shell uname -s)
---- kent/src/utils/bedJoinTabOffset	2018-06-06 02:23:56.000000000 +0200
-+++ kent/src/utils/bedJoinTabOffset	2018-06-06 02:23:56.000000000 +0200
-@@ -1,4 +1,4 @@
--#!/usr/bin/env python2.7
-+#!/usr/bin/env python
- 
- import logging, sys, optparse, string
- from collections import defaultdict
+--- kent/src/inc/common.mk	2022-10-25 12:00:00.000000000 +0100
++++ kent/src/inc/common.mk	2022-10-25 12:00:00.000000000 +0100
+@@ -147,4 +147,4 @@
+-       L+=${PREFIX}/lib/libssl.a ${PREFIX}/lib/libcrypto.a -ldl
++       L+=${PREFIX}/lib/libssl.so ${PREFIX}/lib/libcrypto.so -ldl
+    else
+      ifneq ($(wildcard /opt/local/lib/libssl.a),)
+          L+=/opt/local/lib/libssl.a
 --- kent/src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed	2018-06-06 02:23:56.000000000 +0200
 +++ kent/src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed	2018-06-06 02:23:56.000000000 +0200
 @@ -1,4 +1,4 @@
@@ -25,3 +25,16 @@
  # expMatrixToBarchartBed
  """
  Generate a barChart bed6+5 file from a matrix, meta data, and coordinates.
+--- kent/src/hg/lib/straw/makefile
++++ kent/src/hg/lib/straw/makefile
+@@ -3,8 +3,8 @@
+ straw: straw.o cStraw.o
+ 	ld -r -o ../straw.o straw.o cStraw.o
+ straw.o: straw.cpp straw.h
+-	${CXX} straw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o straw.o
++	${CXX} straw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o straw.o -I ${PREFIX}/include
+ cStraw.o: cStraw.cpp straw.h
+-	${CXX} cStraw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o cStraw.o
++	${CXX} cStraw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o cStraw.o -I ${PREFIX}/include
+ clean:
+ 	rm -f straw.o cStraw.o ../straw.o
diff --git a/recipes/ucsc-fasomerecords/meta.yaml b/recipes/ucsc-fasomerecords/meta.yaml
index b3f3b568fae30..507bf2b0b7cd6 100644
--- a/recipes/ucsc-fasomerecords/meta.yaml
+++ b/recipes/ucsc-fasomerecords/meta.yaml
@@ -1,7 +1,7 @@
 {% set package = "ucsc-fasomerecords" %}
 {% set program = "faSomeRecords" %}
-{% set version = "377" %}
-{% set sha256 = "932f149c19641064a9cd3f2382cbb54b45a9292b8444792872d531346925d676" %}
+{% set version = "455" %}
+{% set sha256 = "e458cadad7c4a5c1b8385edafffa1b29380ac725a0c20535bf5a3bab99fe80db" %}
 
 package:
   name: "{{ package }}"
@@ -15,19 +15,22 @@ source:
 
 build:
   skip: True  # [osx]
-  number: 4
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(package, max_pin=None) }}
 
 requirements:
   build:
     - make
     - {{ compiler('c') }}
+    - binutils >=2.32  # https://wiki.gentoo.org/wiki/Project:Toolchain/Binutils_2.32_upgrade_notes/elfutils_0.175:_unable_to_initialize_decompress_status_for_section_.debug_info
+    - {{ compiler('cxx') }}
   host:
     - libpng
     - libuuid
     - mysql-connector-c
     - openssl
     - zlib
-
   run:
     - libpng
     - libuuid
diff --git a/recipes/ucsc-fatotwobit/build.sh b/recipes/ucsc-fatotwobit/build.sh
index 3af116406aaff..cd1c569ec1e88 100644
--- a/recipes/ucsc-fatotwobit/build.sh
+++ b/recipes/ucsc-fatotwobit/build.sh
@@ -1,6 +1,6 @@
 #!/bin/bash
 mkdir -p "$PREFIX/bin"
-export MACHTYPE=x86_64
+export MACHTYPE=$(uname -m)
 export BINDIR=$(pwd)/bin
 export L="${LDFLAGS}"
 mkdir -p "$BINDIR"
diff --git a/recipes/ucsc-fatotwobit/htmshell.patch b/recipes/ucsc-fatotwobit/htmshell.patch
new file mode 100644
index 0000000000000..1e6f87375ed01
--- /dev/null
+++ b/recipes/ucsc-fatotwobit/htmshell.patch
@@ -0,0 +1,11 @@
+--- kent/src/lib/htmshell.c	2024-03-27 10:56:44.493892141 +0200
++++ kent/src/lib/htmshell.c	2024-03-27 10:57:01.073792396 +0200
+@@ -713,7 +713,7 @@
+ puts("Status: 400\r");
+ puts("Content-Type: text/plain; charset=UTF-8\r");
+ puts("\r");
+-if (format != NULL && args != NULL)
++if (format != NULL)
+     {
+     vfprintf(stdout, format, args);
+     fprintf(stdout, "\n");
diff --git a/recipes/ucsc-fatotwobit/meta.yaml b/recipes/ucsc-fatotwobit/meta.yaml
index eaaf15bc647e4..2b337b0122fe1 100644
--- a/recipes/ucsc-fatotwobit/meta.yaml
+++ b/recipes/ucsc-fatotwobit/meta.yaml
@@ -1,7 +1,7 @@
 {% set package = "ucsc-fatotwobit" %}
 {% set program = "faToTwoBit" %}
-{% set version = "447" %}
-{% set sha256 = "747a48486f7481d891e297baf63623b15d699265ede7339f654bcbc42481ac81" %}
+{% set version = "455" %}
+{% set sha256 = "e458cadad7c4a5c1b8385edafffa1b29380ac725a0c20535bf5a3bab99fe80db" %}
 
 package:
   name: "{{ package }}"
@@ -12,13 +12,16 @@ source:
   sha256: "{{ sha256 }}"
   patches:
     - "include.patch"
+    - htmshell.patch
 
 build:
   skip: True # [osx]
-  number: 0
+  number: 1
   ignore_run_exports:
     - libpng
     - libuuid
+  run_exports:
+    - {{ pin_subpackage("ucsc-fatotwobit", max_pin=None) }}
 
 requirements:
   build:
@@ -48,3 +51,7 @@ about:
   home: "http://hgdownload.cse.ucsc.edu/admin/exe/"
   license: "varies; see http://genome.ucsc.edu/license"
   summary: "Convert DNA from fasta to 2bit format"
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/ucsc-fatovcf/build.sh b/recipes/ucsc-fatovcf/build.sh
index 1074509ead921..2f2c83808ef5c 100644
--- a/recipes/ucsc-fatovcf/build.sh
+++ b/recipes/ucsc-fatovcf/build.sh
@@ -7,7 +7,7 @@ export CFLAGS="${CFLAGS} -I${PREFIX}/include ${LDFLAGS}"
 export USE_HIC=0
 
 mkdir -p "${PREFIX}/bin"
-export MACHTYPE=x86_64
+export MACHTYPE=$(uname -m)
 export BINDIR=$(pwd)/bin
 export L="${LDFLAGS}"
 mkdir -p "${BINDIR}"
diff --git a/recipes/ucsc-fatovcf/htmshell.patch b/recipes/ucsc-fatovcf/htmshell.patch
new file mode 100644
index 0000000000000..1e6f87375ed01
--- /dev/null
+++ b/recipes/ucsc-fatovcf/htmshell.patch
@@ -0,0 +1,11 @@
+--- kent/src/lib/htmshell.c	2024-03-27 10:56:44.493892141 +0200
++++ kent/src/lib/htmshell.c	2024-03-27 10:57:01.073792396 +0200
+@@ -713,7 +713,7 @@
+ puts("Status: 400\r");
+ puts("Content-Type: text/plain; charset=UTF-8\r");
+ puts("\r");
+-if (format != NULL && args != NULL)
++if (format != NULL)
+     {
+     vfprintf(stdout, format, args);
+     fprintf(stdout, "\n");
diff --git a/recipes/ucsc-fatovcf/meta.yaml b/recipes/ucsc-fatovcf/meta.yaml
index 1d2de4903514d..36c44e98dcd56 100644
--- a/recipes/ucsc-fatovcf/meta.yaml
+++ b/recipes/ucsc-fatovcf/meta.yaml
@@ -12,10 +12,13 @@ source:
   sha256: {{ sha256 }}
   patches:
     - include.patch
+    - htmshell.patch
 
 build:
-  number: 0
+  number: 1
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage(package, max_pin=None) }}
 
 requirements:
   build:
@@ -45,3 +48,7 @@ about:
   home: "http://hgdownload.cse.ucsc.edu/admin/exe/"
   license: "varies; see http://genome.ucsc.edu/license"
   summary: "Extract VCF from a multi-sequence FASTA alignment"
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/ucsc-genepredtobed/build.sh b/recipes/ucsc-genepredtobed/build.sh
index 106e6c404fcf1..73f68a12d7a6a 100644
--- a/recipes/ucsc-genepredtobed/build.sh
+++ b/recipes/ucsc-genepredtobed/build.sh
@@ -1,6 +1,6 @@
 #!/bin/bash
 mkdir -p "$PREFIX/bin"
-export MACHTYPE=x86_64
+export MACHTYPE=$(uname -m)
 export BINDIR=$(pwd)/bin
 export L="${LDFLAGS}"
 mkdir -p "$BINDIR"
diff --git a/recipes/ucsc-genepredtobed/htmshell.patch b/recipes/ucsc-genepredtobed/htmshell.patch
new file mode 100644
index 0000000000000..1e6f87375ed01
--- /dev/null
+++ b/recipes/ucsc-genepredtobed/htmshell.patch
@@ -0,0 +1,11 @@
+--- kent/src/lib/htmshell.c	2024-03-27 10:56:44.493892141 +0200
++++ kent/src/lib/htmshell.c	2024-03-27 10:57:01.073792396 +0200
+@@ -713,7 +713,7 @@
+ puts("Status: 400\r");
+ puts("Content-Type: text/plain; charset=UTF-8\r");
+ puts("\r");
+-if (format != NULL && args != NULL)
++if (format != NULL)
+     {
+     vfprintf(stdout, format, args);
+     fprintf(stdout, "\n");
diff --git a/recipes/ucsc-genepredtobed/meta.yaml b/recipes/ucsc-genepredtobed/meta.yaml
index 62b669805fbc6..ce54339cf9111 100644
--- a/recipes/ucsc-genepredtobed/meta.yaml
+++ b/recipes/ucsc-genepredtobed/meta.yaml
@@ -12,13 +12,16 @@ source:
   sha256: {{ sha256 }}
   patches:
     - include.patch
+    - htmshell.patch
 
 build:
-  number: 0
+  number: 1
   skip: True # [osx]
   ignore_run_exports:
     - libpng
     - libuuid
+  run_exports:
+    - {{ pin_subpackage(package, max_pin=None) }}
 
 requirements:
   build:
@@ -48,3 +51,7 @@ about:
   home: "http://hgdownload.cse.ucsc.edu/admin/exe/"
   license: "varies; see http://genome.ucsc.edu/license"
   summary: "Convert from genePred to bed format. Does not yet handle genePredExt"
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/ucsc-gtftogenepred/htmshell.patch b/recipes/ucsc-gtftogenepred/htmshell.patch
new file mode 100644
index 0000000000000..1e6f87375ed01
--- /dev/null
+++ b/recipes/ucsc-gtftogenepred/htmshell.patch
@@ -0,0 +1,11 @@
+--- kent/src/lib/htmshell.c	2024-03-27 10:56:44.493892141 +0200
++++ kent/src/lib/htmshell.c	2024-03-27 10:57:01.073792396 +0200
+@@ -713,7 +713,7 @@
+ puts("Status: 400\r");
+ puts("Content-Type: text/plain; charset=UTF-8\r");
+ puts("\r");
+-if (format != NULL && args != NULL)
++if (format != NULL)
+     {
+     vfprintf(stdout, format, args);
+     fprintf(stdout, "\n");
diff --git a/recipes/ucsc-gtftogenepred/meta.yaml b/recipes/ucsc-gtftogenepred/meta.yaml
index e3c78d48bc2a7..87ed2f492e9cb 100644
--- a/recipes/ucsc-gtftogenepred/meta.yaml
+++ b/recipes/ucsc-gtftogenepred/meta.yaml
@@ -12,13 +12,16 @@ source:
   sha256: {{ sha256 }}
   patches:
     - include.patch
+    - htmshell.patch
 
 build:
-  number: 0
+  number: 1
   skip: True # [osx]
   ignore_run_exports:
     - libpng
     - libuuid
+  run_exports:
+    - {{ pin_subpackage(package|lower, max_pin=None) }}
 
 requirements:
   build:
@@ -48,3 +51,7 @@ about:
   home: "http://hgdownload.cse.ucsc.edu/admin/exe/"
   license: "varies; see http://genome.ucsc.edu/license"
   summary: "Convert a GTF file to a genePred"
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/ucsc-liftover/build.sh b/recipes/ucsc-liftover/build.sh
index 49383fe092892..189c409009472 100644
--- a/recipes/ucsc-liftover/build.sh
+++ b/recipes/ucsc-liftover/build.sh
@@ -1,13 +1,13 @@
 #!/bin/bash
 mkdir -p "$PREFIX/bin"
-export MACHTYPE=x86_64
+export MACHTYPE=$(uname -m)
 export BINDIR=$(pwd)/bin
 export L="${LDFLAGS}"
 mkdir -p "$BINDIR"
-(cd kent/src/lib && make)
-(cd kent/src/htslib && make)
-(cd kent/src/jkOwnLib && make)
-(cd kent/src/hg/lib && make)
-(cd kent/src/hg/liftOver && make)
+(cd kent/src/lib && make -j${CPU_COUNT})
+(cd kent/src/htslib && make -j${CPU_COUNT})
+(cd kent/src/jkOwnLib && make -j${CPU_COUNT})
+(cd kent/src/hg/lib && make -j${CPU_COUNT})
+(cd kent/src/hg/liftOver && make -j${CPU_COUNT})
 cp bin/liftOver "$PREFIX/bin"
 chmod +x "$PREFIX/bin/liftOver"
diff --git a/recipes/ucsc-liftover/htmshell.patch b/recipes/ucsc-liftover/htmshell.patch
new file mode 100644
index 0000000000000..1e6f87375ed01
--- /dev/null
+++ b/recipes/ucsc-liftover/htmshell.patch
@@ -0,0 +1,11 @@
+--- kent/src/lib/htmshell.c	2024-03-27 10:56:44.493892141 +0200
++++ kent/src/lib/htmshell.c	2024-03-27 10:57:01.073792396 +0200
+@@ -713,7 +713,7 @@
+ puts("Status: 400\r");
+ puts("Content-Type: text/plain; charset=UTF-8\r");
+ puts("\r");
+-if (format != NULL && args != NULL)
++if (format != NULL)
+     {
+     vfprintf(stdout, format, args);
+     fprintf(stdout, "\n");
diff --git a/recipes/ucsc-liftover/meta.yaml b/recipes/ucsc-liftover/meta.yaml
index e69762f7a6387..4d953bf48e005 100644
--- a/recipes/ucsc-liftover/meta.yaml
+++ b/recipes/ucsc-liftover/meta.yaml
@@ -12,13 +12,16 @@ source:
   sha256: {{ sha256 }}
   patches:
     - include.patch
+    - htmshell.patch
 
 build:
-  number: 0
+  number: 1
   skip: True # [osx]
   ignore_run_exports:
     - libpng
     - libuuid
+  run_exports:
+    - {{ pin_subpackage(package, max_pin=None) }}
 
 requirements:
   build:
@@ -48,3 +51,7 @@ about:
   home: "http://hgdownload.cse.ucsc.edu/admin/exe/"
   license: "varies; see http://genome.ucsc.edu/license"
   summary: "Move annotations from one assembly to another"
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/ucsc-pslsortacc/build.sh b/recipes/ucsc-pslsortacc/build.sh
new file mode 100644
index 0000000000000..63d55501cca2e
--- /dev/null
+++ b/recipes/ucsc-pslsortacc/build.sh
@@ -0,0 +1,13 @@
+#!/bin/bash
+mkdir -p "$PREFIX/bin"
+export MACHTYPE=x86_64
+export BINDIR=$(pwd)/bin
+export L="${LDFLAGS}"
+mkdir -p "$BINDIR"
+(cd kent/src/lib && make)
+(cd kent/src/htslib && make)
+(cd kent/src/jkOwnLib && make)
+(cd kent/src/hg/lib && make)
+(cd kent/src/hg/pslSortAcc && make)
+cp bin/pslSortAcc "$PREFIX/bin"
+chmod +x "$PREFIX/bin/pslSortAcc"
diff --git a/recipes/ucsc-pslsortacc/include.patch b/recipes/ucsc-pslsortacc/include.patch
new file mode 100644
index 0000000000000..e4831ef2dea13
--- /dev/null
+++ b/recipes/ucsc-pslsortacc/include.patch
@@ -0,0 +1,40 @@
+--- kent/src/inc/common.mk	2017-11-07 17:46:00.000000000 -0500
++++ kent/src/inc/common.mk	2017-11-13 17:44:51.017090255 -0500
+@@ -17,7 +17,7 @@
+ endif
+ 
+ HG_DEFS=-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_${MACHTYPE}
+-HG_INC+=-I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I$(kentSrc)/htslib
++HG_INC+=-I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I$(kentSrc)/htslib -I ${PREFIX}/include
+ 
+ # to check for Mac OSX Darwin specifics:
+ UNAME_S := $(shell uname -s)
+--- kent/src/inc/common.mk	2022-10-25 12:00:00.000000000 +0100
++++ kent/src/inc/common.mk	2022-10-25 12:00:00.000000000 +0100
+@@ -147,4 +147,4 @@
+-       L+=${PREFIX}/lib/libssl.a ${PREFIX}/lib/libcrypto.a -ldl
++       L+=${PREFIX}/lib/libssl.so ${PREFIX}/lib/libcrypto.so -ldl
+    else
+      ifneq ($(wildcard /opt/local/lib/libssl.a),)
+          L+=/opt/local/lib/libssl.a
+--- kent/src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed	2018-06-06 02:23:56.000000000 +0200
++++ kent/src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed	2018-06-06 02:23:56.000000000 +0200
+@@ -1,4 +1,4 @@
+-#!/usr/bin/env python2.7
++#!/usr/bin/env python
+ # expMatrixToBarchartBed
+ """
+ Generate a barChart bed6+5 file from a matrix, meta data, and coordinates.
+--- kent/src/hg/lib/straw/makefile
++++ kent/src/hg/lib/straw/makefile
+@@ -3,8 +3,8 @@
+ straw: straw.o cStraw.o
+ 	ld -r -o ../straw.o straw.o cStraw.o
+ straw.o: straw.cpp straw.h
+-	${CXX} straw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o straw.o
++	${CXX} straw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o straw.o -I ${PREFIX}/include
+ cStraw.o: cStraw.cpp straw.h
+-	${CXX} cStraw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o cStraw.o
++	${CXX} cStraw.cpp ${KENT_INC} -g -c -lz -std=c++11 -lcurl -o cStraw.o -I ${PREFIX}/include
+ clean:
+ 	rm -f straw.o cStraw.o ../straw.o
diff --git a/recipes/ucsc-pslsortacc/meta.yaml b/recipes/ucsc-pslsortacc/meta.yaml
new file mode 100644
index 0000000000000..0041b30f4489a
--- /dev/null
+++ b/recipes/ucsc-pslsortacc/meta.yaml
@@ -0,0 +1,49 @@
+{% set package = "ucsc-pslsortacc" %}
+{% set program = "pslSortAcc" %}
+{% set version = "455" %}
+{% set sha256 = "e458cadad7c4a5c1b8385edafffa1b29380ac725a0c20535bf5a3bab99fe80db" %}
+
+package:
+  name: "{{ package }}"
+  version: "{{ version }}"
+
+source:
+  url: "http://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v{{ version }}.src.tgz"
+  sha256: "{{ sha256 }}"
+  patches:
+    - "include.patch"
+
+build:
+  skip: True  # [osx]
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("ucsc-pslsortacc", max_pin=None) }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('c') }}
+    - binutils >=2.32  # https://wiki.gentoo.org/wiki/Project:Toolchain/Binutils_2.32_upgrade_notes/elfutils_0.175:_unable_to_initialize_decompress_status_for_section_.debug_info
+    - {{ compiler('cxx') }}
+  host:
+    - libpng
+    - libuuid
+    - mysql-connector-c
+    - openssl
+    - zlib
+  run:
+    - libpng
+    - libuuid
+    - mysql-connector-c
+    - openssl
+    - zlib
+
+test:
+  commands:
+    # just check for existence, because the individual packages have no unified behavior
+    - which {{ program }}
+
+about:
+  home: "http://hgdownload.cse.ucsc.edu/admin/exe/"
+  license: "varies; see http://genome.ucsc.edu/license"
+  summary: "Remove chain-breaking alignments from chains that break nested chains."
diff --git a/recipes/ucsc-pslsortacc/run_test.sh b/recipes/ucsc-pslsortacc/run_test.sh
new file mode 100644
index 0000000000000..8453138f6168a
--- /dev/null
+++ b/recipes/ucsc-pslsortacc/run_test.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+pslSortAcc 2> /dev/null || [[ "$?" == 255 ]]
diff --git a/recipes/ucsc-twobitinfo/htmshell.patch b/recipes/ucsc-twobitinfo/htmshell.patch
new file mode 100644
index 0000000000000..1e6f87375ed01
--- /dev/null
+++ b/recipes/ucsc-twobitinfo/htmshell.patch
@@ -0,0 +1,11 @@
+--- kent/src/lib/htmshell.c	2024-03-27 10:56:44.493892141 +0200
++++ kent/src/lib/htmshell.c	2024-03-27 10:57:01.073792396 +0200
+@@ -713,7 +713,7 @@
+ puts("Status: 400\r");
+ puts("Content-Type: text/plain; charset=UTF-8\r");
+ puts("\r");
+-if (format != NULL && args != NULL)
++if (format != NULL)
+     {
+     vfprintf(stdout, format, args);
+     fprintf(stdout, "\n");
diff --git a/recipes/ucsc-twobitinfo/meta.yaml b/recipes/ucsc-twobitinfo/meta.yaml
index f3fcd9757c185..32559085469d0 100644
--- a/recipes/ucsc-twobitinfo/meta.yaml
+++ b/recipes/ucsc-twobitinfo/meta.yaml
@@ -1,7 +1,7 @@
 {% set package = "ucsc-twobitinfo" %}
 {% set program = "twoBitInfo" %}
-{% set version = "447" %}
-{% set sha256 = "747a48486f7481d891e297baf63623b15d699265ede7339f654bcbc42481ac81" %}
+{% set version = "455" %}
+{% set sha256 = "e458cadad7c4a5c1b8385edafffa1b29380ac725a0c20535bf5a3bab99fe80db" %}
 
 package:
   name: "{{ package }}"
@@ -12,13 +12,16 @@ source:
   sha256: "{{ sha256 }}"
   patches:
     - "include.patch"
+    - htmshell.patch
 
 build:
   skip: True # [osx]
-  number: 0
+  number: 1
   ignore_run_exports:
     - libpng
     - libuuid
+  run_exports:
+    - {{ pin_subpackage(package, max_pin=None) }}
 
 requirements:
   build:
@@ -48,3 +51,7 @@ about:
   home: "http://hgdownload.cse.ucsc.edu/admin/exe/"
   license: "varies; see http://genome.ucsc.edu/license"
   summary: "get information about sequences in a .2bit file"
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/ucsc-twobittofa/build.sh b/recipes/ucsc-twobittofa/build.sh
index 56c2c2edc3e97..8f25dc11367ae 100644
--- a/recipes/ucsc-twobittofa/build.sh
+++ b/recipes/ucsc-twobittofa/build.sh
@@ -1,13 +1,13 @@
 #!/bin/bash
 mkdir -p "$PREFIX/bin"
-export MACHTYPE=x86_64
+export MACHTYPE=$(uname -m)
 export BINDIR=$(pwd)/bin
 export L="${LDFLAGS}"
 mkdir -p "$BINDIR"
-(cd kent/src/lib && make)
-(cd kent/src/htslib && make)
-(cd kent/src/jkOwnLib && make)
-(cd kent/src/hg/lib && make)
-(cd kent/src/utils/twoBitToFa && make)
+(cd kent/src/lib && make -j ${CPU_COUNT})
+(cd kent/src/htslib && make -j ${CPU_COUNT})
+(cd kent/src/jkOwnLib && make -j ${CPU_COUNT})
+(cd kent/src/hg/lib && make -j ${CPU_COUNT})
+(cd kent/src/utils/twoBitToFa && make -j ${CPU_COUNT})
 cp bin/twoBitToFa "$PREFIX/bin"
 chmod +x "$PREFIX/bin/twoBitToFa"
diff --git a/recipes/ucsc-twobittofa/htmshell.patch b/recipes/ucsc-twobittofa/htmshell.patch
new file mode 100644
index 0000000000000..1e6f87375ed01
--- /dev/null
+++ b/recipes/ucsc-twobittofa/htmshell.patch
@@ -0,0 +1,11 @@
+--- kent/src/lib/htmshell.c	2024-03-27 10:56:44.493892141 +0200
++++ kent/src/lib/htmshell.c	2024-03-27 10:57:01.073792396 +0200
+@@ -713,7 +713,7 @@
+ puts("Status: 400\r");
+ puts("Content-Type: text/plain; charset=UTF-8\r");
+ puts("\r");
+-if (format != NULL && args != NULL)
++if (format != NULL)
+     {
+     vfprintf(stdout, format, args);
+     fprintf(stdout, "\n");
diff --git a/recipes/ucsc-twobittofa/meta.yaml b/recipes/ucsc-twobittofa/meta.yaml
index e1a9af495a86d..9469bbbab5f7e 100644
--- a/recipes/ucsc-twobittofa/meta.yaml
+++ b/recipes/ucsc-twobittofa/meta.yaml
@@ -1,7 +1,7 @@
 {% set package = "ucsc-twobittofa" %}
 {% set program = "twoBitToFa" %}
-{% set version = "447" %}
-{% set sha256 = "747a48486f7481d891e297baf63623b15d699265ede7339f654bcbc42481ac81" %}
+{% set version = "455" %}
+{% set sha256 = "e458cadad7c4a5c1b8385edafffa1b29380ac725a0c20535bf5a3bab99fe80db" %}
 
 package:
   name: {{ package }}
@@ -12,13 +12,16 @@ source:
   sha256: {{ sha256 }}
   patches:
     - include.patch
+    - htmshell.patch
 
 build:
-  number: 0
   skip: True # [osx]
+  number: 1
   ignore_run_exports:
     - libpng
     - libuuid
+  run_exports:
+    - {{ pin_subpackage("ucsc-twobittofa", max_pin=None) }}
 
 requirements:
   build:
@@ -48,3 +51,7 @@ about:
   home: "http://hgdownload.cse.ucsc.edu/admin/exe/"
   license: "varies; see http://genome.ucsc.edu/license"
   summary: "Convert all or part of .2bit file to fasta"
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/ucsc-wigtobigwig/htmshell.patch b/recipes/ucsc-wigtobigwig/htmshell.patch
new file mode 100644
index 0000000000000..1e6f87375ed01
--- /dev/null
+++ b/recipes/ucsc-wigtobigwig/htmshell.patch
@@ -0,0 +1,11 @@
+--- kent/src/lib/htmshell.c	2024-03-27 10:56:44.493892141 +0200
++++ kent/src/lib/htmshell.c	2024-03-27 10:57:01.073792396 +0200
+@@ -713,7 +713,7 @@
+ puts("Status: 400\r");
+ puts("Content-Type: text/plain; charset=UTF-8\r");
+ puts("\r");
+-if (format != NULL && args != NULL)
++if (format != NULL)
+     {
+     vfprintf(stdout, format, args);
+     fprintf(stdout, "\n");
diff --git a/recipes/ucsc-wigtobigwig/meta.yaml b/recipes/ucsc-wigtobigwig/meta.yaml
index f5fe88a1de56b..c21b3a9bb7d40 100644
--- a/recipes/ucsc-wigtobigwig/meta.yaml
+++ b/recipes/ucsc-wigtobigwig/meta.yaml
@@ -12,10 +12,13 @@ source:
   sha256: {{ sha256 }}
   patches:
     - include.patch
+    - htmshell.patch
 
 build:
-  number: 1
+  number: 2
   skip: True # [osx]
+  run_exports:
+    - {{ pin_subpackage(package, max_pin=None) }}
   ignore_run_exports:
     - libpng
     - libuuid
@@ -48,3 +51,7 @@ about:
   home: "http://hgdownload.cse.ucsc.edu/admin/exe/"
   license: "varies; see http://genome.ucsc.edu/license"
   summary: "Convert ascii format wig file (in fixedStep, variableStep)"
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/ufcg/build.sh b/recipes/ufcg/build.sh
index 35bcb349dd305..29cabe5ed9f13 100644
--- a/recipes/ufcg/build.sh
+++ b/recipes/ufcg/build.sh
@@ -2,7 +2,7 @@
 
 set -x -e
 
-UFCG_JAR="UFCG-latest.jar"
+UFCG_JAR="ufcg.jar"
 UFCG_LIC="LICENSE.md"
 UFCG_BIN="${PREFIX}/bin/ufcg"
 
diff --git a/recipes/ufcg/meta.yaml b/recipes/ufcg/meta.yaml
index 34238fd2c8a83..3a687eaf90ffe 100644
--- a/recipes/ufcg/meta.yaml
+++ b/recipes/ufcg/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "ufcg" %}
-{% set version = "1.0.4" %}
-{% set sha256 = "18203ba5e9589ef82f43bacef0915a3b8acdc1c9c852548fc4d2d3653e1fa85d" %}
+{% set version = "1.0.5" %}
+{% set sha256 = "819176e4097c8654e70e1ae49f731aa26f450282f8642783005009b526ce22c3" %}
 
 package:
   name: {{ name|lower }}
diff --git a/recipes/ultraplex/meta.yaml b/recipes/ultraplex/meta.yaml
index 16f5134c8718d..86c0708b1c4f0 100644
--- a/recipes/ultraplex/meta.yaml
+++ b/recipes/ultraplex/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "ultraplex" %}
-{% set version = "1.2.5" %}
+{% set version = "1.2.9" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,13 +7,17 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 13fcb6bcbb20c1765a544869171dff4f31a930b77ebb44bed6a6000c4ea9a3b4
-
+  sha256: 7b1efa09a421590907c7e5177eb9e4837deade89c237b961bcf2f7edfa9f2e90
 
 build:
-  number: 2
-  script: "{{ PYTHON }} -m pip install . --no-deps -vv"
+  number: 1
   skip: True  # [py < 37 or py > 39]
+  script: 
+    - "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --use-pep517 -vvv"
+  entry_points:
+    - ultraplex = ultraplex.__main__:main
+  run_exports:
+    - {{ pin_subpackage('ultraplex', max_pin="x") }}
 
 requirements:
   build:
@@ -22,12 +26,14 @@ requirements:
     - pip
     - python
     - cython
-    - setuptools_scm
+    - setuptools-scm >8
   run:
     - python
     - xopen >=1.0.0
     - dnaio >=0.5.0
     - pigz
+    - multiprocess
+    - setuptools_scm >8
 
 test:
   imports:
@@ -39,8 +45,10 @@ about:
   home: "https://github.com/ulelab/ultraplex.git"
   license: MIT
   license_family: MIT
+  license_file: LICENSE
   summary: "fastq demultiplexer"
 
 extra:
   recipe-maintainers:
     - Delayed-Gitification
+    - CharlotteAnne
diff --git a/recipes/umi-transfer/build.sh b/recipes/umi-transfer/build.sh
new file mode 100644
index 0000000000000..5c4efc2ca83d4
--- /dev/null
+++ b/recipes/umi-transfer/build.sh
@@ -0,0 +1,10 @@
+#!/bin/bash -euo
+export CFLAGS="${CFLAGS} -fcommon"
+export CXXFLAGS="${CFLAGS} -fcommon"
+
+# Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
+# We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
+export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="$(pwd)/.cargo"
+
+# build statically linked binary with Rust
+RUST_BACKTRACE=1 cargo install --verbose --root $PREFIX --path .
\ No newline at end of file
diff --git a/recipes/umi-transfer/meta.yaml b/recipes/umi-transfer/meta.yaml
new file mode 100644
index 0000000000000..061cfdc1d4b78
--- /dev/null
+++ b/recipes/umi-transfer/meta.yaml
@@ -0,0 +1,38 @@
+{% set version = "1.0.0" %}
+{% set sha256 = "04e2ee89487fde9be51984a5143931f349b39563b7e0b1861221389c5c5d1b7a" %}
+
+package:
+  name: umi-transfer
+  version: {{ version }}
+
+source:
+  url: https://github.com/SciLifeLab/umi-transfer/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+  
+build:
+  number: 0
+
+requirements:
+  build:
+    - rust >=1.40
+    - cmake
+    - make
+    - autoconf
+    - {{ compiler('cxx') }}
+    - pkg-config
+    - zlib
+  host:
+    - zlib
+  run:
+
+
+test:
+  commands:
+    - umi-transfer --help
+
+about:
+  home: https://github.com/SciLifeLab/umi-transfer
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: A tool for transferring Unique Molecular Identifiers (UMIs) from a separate FastQ file.
diff --git a/recipes/umi_tools/meta.yaml b/recipes/umi_tools/meta.yaml
index 1dfa3b6caa4b6..c7f05cab66524 100644
--- a/recipes/umi_tools/meta.yaml
+++ b/recipes/umi_tools/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "umi_tools" %}
-{% set version = "1.1.4" %}
-{% set sha256hash = "945c4c98e2007369c301a7a009c6f9deb0fda74b0117cd14e14bd134164a4ff6" %}
+{% set version = "1.1.5" %}
+{% set sha256hash = "2a87b75364ebe3e6ccf467d3b6d0501c458a48f3e6c8ab8b7c4dfb3fd7627fab" %}
 
 package:
   name: {{ name }}
@@ -11,11 +11,13 @@ source:
   sha256: {{ sha256hash }}
 
 build:
-  number: 2
+  number: 1
   script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir -vvv"
   skip: True  # [py27]
   entry_points:
     - umi_tools = umi_tools.umi_tools:main
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
 
 requirements:
   build:
@@ -45,3 +47,7 @@ about:
   summary: 'Tools for dealing with Unique Molecular Identifiers
             (UMIs) / Random Molecular Tags (RMTs)'
   dev_url: https://github.com/CGATOxford/UMI-tools
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/umis/meta.yaml b/recipes/umis/meta.yaml
index daa5e038df0ce..3c7b4ddff3e27 100644
--- a/recipes/umis/meta.yaml
+++ b/recipes/umis/meta.yaml
@@ -6,11 +6,13 @@ package:
   version: "{{ version }}"
 
 build:
-  number: 1
+  number: 2
+  run_exports:
+    - {{ pin_subpackage('umis', max_pin='x') }}
 
 source:
   url: "{{ github }}/archive/refs/tags/v{{ version }}.tar.gz"
-  sha256: a471522ccd2ad6d86cb9ae4cbb61f27ace8da80ca75d1f7f3faf980790424179
+  sha256: 7d446da4cc31f075e539db6b6d7b31a3309e0c4c708875981d61780c2de7ed82
 
 requirements:
   build:
@@ -40,6 +42,8 @@ about:
   summary: Tools for processing UMI RNA-tag data
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   container:
     # click requires a unicode locale when used with Python 3
     # extended-base generates en_US.UTF-8 locale and sets LC_ALL, LANG properly
diff --git a/recipes/unassigner/meta.yaml b/recipes/unassigner/meta.yaml
new file mode 100644
index 0000000000000..e3b7bce47b243
--- /dev/null
+++ b/recipes/unassigner/meta.yaml
@@ -0,0 +1,46 @@
+{% set name = "unassigner" %}
+{% set version = "1.0.0" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: 0a79a0fdf88318a2583e2a46deffb6f6ff4ce612c55b470c007eed7bb9aa2194
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - unassigner = unassigner.command:main
+  script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
+  run_exports:
+    - {{ pin_subpackage('unassigner', max_pin="x") }}
+
+requirements:
+  host:
+    - pip
+    - python
+  run:
+    - python
+    - vsearch
+    - biopython
+    - scipy
+
+test:
+  imports:
+    - unassigner
+  commands:
+    - unassigner --help
+
+about:
+  home: https://github.com/PennChopMicrobiomeProgram/unassigner
+  license: GPL-2.0-or-later
+  license_family: GPL
+  summary: "Type strain identification for 16S reads"
+  dev_url: https://github.com/PennChopMicrobiomeProgram/unassigner
+
+extra:
+  recipe-maintainers:
+    - Ulthran
diff --git a/recipes/unifrac-binaries/meta.yaml b/recipes/unifrac-binaries/meta.yaml
index 850c35435acbb..c51e9178b420c 100644
--- a/recipes/unifrac-binaries/meta.yaml
+++ b/recipes/unifrac-binaries/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.3.2" %}
+{% set version = "1.4" %}
 
 package:
   name: unifrac-binaries
@@ -6,19 +6,19 @@ package:
 
 source:
   url: https://github.com/biocore/unifrac-binaries/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 3395ce67d967b06a20ffc3cfa24c5cc400b49a7670399333b5daa2e4644627a7
+  sha256: 7067a3bcee8702caa8c3ea6e5fd8f1bb059f84a791b237762730fbf232ae785f
 
 build:
-  number: 2
+  number: 0
 
 requirements:
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
     - gfortran_linux-64 # [linux]
-    - hdf5
+    - hdf5 =*=nompi*
     - mkl-include
-    - hdf5-static
+    - hdf5-static =*=nompi*
     - lz4
     - zlib
     - libcblas
diff --git a/recipes/unikseq/meta.yaml b/recipes/unikseq/meta.yaml
index 7acad68484a8d..6eee8a084f202 100644
--- a/recipes/unikseq/meta.yaml
+++ b/recipes/unikseq/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.3.4" %}
+{% set version = "1.3.5" %}
 
 package:
   name: unikseq
@@ -6,7 +6,7 @@ package:
 
 source:
   url: https://github.com/bcgsc/unikseq/releases/download/v{{ version }}/unikseq-{{ version }}.tar.gz
-  sha256: e5abe93ccd3bd4b66a67516cde0d877fe82d0ac275833d7d3cc9d95c19f68cf4
+  sha256: 9b497384ce023a06fd79353c2488455f1517f10e575c86f1f5df1e21463d09e8
   patches:
     - unikseq-bloom.patch
     - unikseq-write-bloom.patch
@@ -14,6 +14,8 @@ source:
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage('unikseq', max_pin="x") }}
 
 requirements:
   run:
@@ -27,7 +29,7 @@ test:
     - writeBloom.pl |grep "Usage"
 
 about:
-  summary: Unique DNA sequence region identification, using a k-mer approach
+  summary: Unique DNA sequence region identification using a k-mer approach
   home: https://github.com/bcgsc/unikseq
   license: GPL-3.0
   license_file: LICENSE
diff --git a/recipes/unitig-caller/meta.yaml b/recipes/unitig-caller/meta.yaml
index 66a861b27b3ad..67bcd0abf6cb4 100644
--- a/recipes/unitig-caller/meta.yaml
+++ b/recipes/unitig-caller/meta.yaml
@@ -12,10 +12,12 @@ source:
     - 0001-No-experimental.patch
 
 build:
-  number: 2
+  number: 3
   skip: True  # [py27]
   entry_points:
     - unitig-caller = unitig_caller.__main__:main
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   build:
@@ -29,12 +31,12 @@ requirements:
     - pybind11
     - zlib
     - bzip2
-    - bifrost >=1.2.0
+    - bifrost >=1.3.0
     - libgomp      # [linux64]
     - llvm-openmp  # [osx]
   run:
     - python
-    - bifrost >=1.2.0
+    - bifrost >=1.3.0
 
 test:
   imports:
diff --git a/recipes/upimapi/meta.yaml b/recipes/upimapi/meta.yaml
index 1a7bab190209b..c146f7d09c704 100644
--- a/recipes/upimapi/meta.yaml
+++ b/recipes/upimapi/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "upimapi" %}
-{% set version = "1.12.0" %}
-{% set sha256 = "a03f0ef46f2f124675be2d394bf03ef13abdf97556e413d08333499ef7c46d17" %}
+{% set version = "1.13.1" %}
+{% set sha256 = "72fd88f6c21b6982071c007e9ce9a92ffe2bbc75edff3f6eddcfb0653bced0d4" %}
 
 package:
   name: {{ name|lower }}
@@ -13,6 +13,8 @@ source:
 build:
   noarch: generic
   number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
   script: >
     mkdir -p $PREFIX/bin && 
     cp upimapi.py $PREFIX/bin &&
@@ -52,4 +54,3 @@ about:
 extra:
   recipe-maintainers:
     - iquasere
-
diff --git a/recipes/uropa/build.sh b/recipes/uropa/build.sh
deleted file mode 100644
index e45c73d5420b0..0000000000000
--- a/recipes/uropa/build.sh
+++ /dev/null
@@ -1,3 +0,0 @@
-#!/usr/bin/env bash
-
-$PYTHON setup.py install --single-version-externally-managed --record=record.txt
diff --git a/recipes/uropa/meta.yaml b/recipes/uropa/meta.yaml
index 18ebd85966662..8a5b1d0dea359 100644
--- a/recipes/uropa/meta.yaml
+++ b/recipes/uropa/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "uropa" %}
-{% set version = "4.0.2" %}
+{% set version = "4.0.3" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,16 +7,21 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 3d4288055fb60e0b58380c31524cca7f6352b46117f1644645f603655da04438
+  sha256: e0b648881b95f301e3f3ecc924314995312f10b0cbabf96d5a5ce2fb18c53a59
 
 build:
   number: 0
   noarch: python
+  entry_points:
+    - uropa = uropa.uropa:main
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  run_exports:
+    - {{ pin_subpackage('uropa', max_pin="x") }}
 
 requirements:
   host:
     - python >=3.6
-    - setuptools
+    - pip
   run:
     - numpy
     - psutil
@@ -44,6 +49,7 @@ about:
   home: "https://github.com/loosolab/UROPA"
   license: MIT
   license_family: MIT
+  license_file: LICENSE
   summary: |
           UROPA (Universal RObust Peak Annotator) is a command line based tool, intended for genomic region annotation from e.g. peak calling.
           It detects the most appropriate annotation by taking parameters such as feature type, anchor, direction and strand into account.
diff --git a/recipes/usher/meta.yaml b/recipes/usher/meta.yaml
index de9d93fe8116c..107664cd88018 100644
--- a/recipes/usher/meta.yaml
+++ b/recipes/usher/meta.yaml
@@ -1,4 +1,4 @@
-{% set version="0.6.2" %}
+{% set version="0.6.3" %}
 
 package:
   name: usher
@@ -6,10 +6,12 @@ package:
 
 source:
   - url: https://github.com/yatisht/usher/archive/v{{ version  }}.tar.gz
-    sha256: 2549b9329301abb1d2f5b20dbf17f436c5dc148f3400652c700f762b94d16b22
+    sha256: 95aba8f748599915f21f7bdf883c2e532f2d821138f06cb2e4e58d7323019946
 
 build:
   number: 1
+  run_exports:
+    - {{ pin_subpackage('usher', max_pin="x.x") }}
 
 requirements:
   build:
@@ -46,3 +48,10 @@ about:
   license_family: MIT
   license_file: LICENSE
   summary: Ultrafast Sample Placement on Existing Trees (UShER)
+  doc_url: https://usher-wiki.readthedocs.io/en/latest/
+
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - doi:10.1038/s41588-021-00862-7
diff --git a/recipes/vamb/meta.yaml b/recipes/vamb/meta.yaml
index ab4448831fbde..a2362c80db0c2 100644
--- a/recipes/vamb/meta.yaml
+++ b/recipes/vamb/meta.yaml
@@ -1,33 +1,35 @@
-{% set version = "3.0.2" %}
+{% set version = "4.1.3" %}
 
 package:
   name: vamb
   version: {{ version }}
 
 source:
-  url: https://github.com/RasmussenLab/vamb/archive/{{ version }}.tar.gz
-  sha256: fb63011a89ec7fe1052983973dda6cdcdd796938cdf80ed1013f253c7ded8c67
+  url: https://github.com/RasmussenLab/vamb/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 3b82a36138ebbebf6efe5203da4f9dfae9d0335137bac9775d5b427021aa5645
 
 build:
-  number: 2
+  number: 0
   # Skipping py>=38 since no pytorch-cpu builds for Py3.8 are available.	  skip: True  # [py27]
   skip: True  # [py<30 or py>=38]
   entry_points:
     - vamb=vamb.__main__:main
   script: {{ PYTHON }} -m pip install . --no-deps -vv
+  run_exports:
+    - {{ pin_subpackage('vamb', max_pin="x") }}
 
 requirements:
   build:
     - {{ compiler('c') }}
   host:
-    - python
+    - python >=3.9.0,<3.12
     - pip
-    - cython >=0.25.2
+    - cython >=3.0.0
   run:
-    - python
-    - numpy >=1.15
-    - pytorch-cpu >=0.4
-    - pysam >=0.14
+    - python >=3.9.0,<3.12
+    - numpy ==1.24.2
+    - torch ==1.13.1
+    - pycoverm ==0.6.0
 
 test:
   imports:
diff --git a/recipes/vamos/build.sh b/recipes/vamos/build.sh
index a55e6be12ea90..e6e2422f4273f 100644
--- a/recipes/vamos/build.sh
+++ b/recipes/vamos/build.sh
@@ -5,7 +5,7 @@ export CFLAGS="$CFLAGS -I$PREFIX/include"
 export LDFLAGS="$LDFLAGS -L$PREFIX/lib"
 export CPATH=${PREFIX}/include
 
-cd src && make CC="${CC} ${CFLAGS} ${CPPFLAGS} ${LDFLAGS} -fPIE "  CXX="${CXX} ${CXXFLAGS} ${CPPFLAGS} ${LDFLAGS} -fPIE"
+cd src && make CC="${CC} ${CFLAGS} ${CPPFLAGS} ${LDFLAGS} -fPIE "  CXX="${CXX} ${CXXFLAGS} ${CPPFLAGS} ${LDFLAGS} -fPIE" && cd ..
 
-cp vamos $PREFIX/bin
+cp src/vamos $PREFIX/bin
 
diff --git a/recipes/vamos/meta.yaml b/recipes/vamos/meta.yaml
index a33b565fab455..0fd3c5e0d2840 100644
--- a/recipes/vamos/meta.yaml
+++ b/recipes/vamos/meta.yaml
@@ -1,4 +1,5 @@
-{% set version = "1.2.6" %}
+{% set version = "1.3.6" %}
+{% set name = "vamos" %}
 
 package:
   name: vamos
@@ -6,25 +7,29 @@ package:
 
 source:
   url: https://github.com/ChaissonLab/vamos/archive/refs/tags/{{ version }}.tar.gz
-  sha256: 613a997950ae514774c49abfebad874786511c395363b733b1a1aa8c8fa87e86
-
+  sha256: f5379fbb35bd664b761a08314d7cddc6d0d7ac3faa4c02273083626942755b10
 build:
   number: 0
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x') }}
 
 requirements:
   build:
     - make
     - {{ compiler('c') }}
-    - {{ compiler('cxx') }}    
+    - {{ compiler('cxx') }}
+    - zlib 1.2.*    
+
   host:
     - zlib
     - htslib
-    - abpoa
     - boost
+    - zlib 1.2.*    
   run:
     - htslib
-
+    - zlib 1.2.*
+    
 test:
   commands:
     - vamos | grep 'Usage'
diff --git a/recipes/varcode/meta.yaml b/recipes/varcode/meta.yaml
index 01e085d867ed8..061bbf466712d 100644
--- a/recipes/varcode/meta.yaml
+++ b/recipes/varcode/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "varcode" %}
-{% set version = "1.1.0" %}
+{% set version = "1.2.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: ed2c81a322e13f4b9fcfc15fc1dba87dbeef8ab4cd808f22188ec67db9159512
+  sha256: e3ae050bf772fca49417044f7dfc5f68c373b11ace7afea106d4f35b4721091f
 
 build:
   number: 0
@@ -15,7 +15,9 @@ build:
   entry_points:
     - varcode-genes = varcode.cli.genes_script:main
     - varcode = varcode.cli.effects_script:main
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  run_exports:
+    - {{ pin_subpackage('varcode', max_pin="x") }}
 
 requirements:
   host:
@@ -44,8 +46,9 @@ test:
 
 about:
   home: "https://github.com/openvax/varcode"
-  license: Apache Software
+  license: Apache-2.0
   license_family: APACHE
+  license_file: LICENSE
   summary: "Variant annotation in Python"
 
 extra:
diff --git a/recipes/varfish-annotator-cli/meta.yaml b/recipes/varfish-annotator-cli/meta.yaml
index 5be5c43280b0a..2d6713f5146eb 100644
--- a/recipes/varfish-annotator-cli/meta.yaml
+++ b/recipes/varfish-annotator-cli/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.32" %}
-{% set sha256 = "9e82d37d111959de4fef2babefcdb5fc359c15d88265e0dd360574ed8330b821" %}
+{% set version = "0.34" %}
+{% set sha256 = "4dc1399e5a41564a9616474597bec4ec100478f961bb114075c507b6c19af738" %}
 
 package:
   name: varfish-annotator-cli
@@ -12,6 +12,8 @@ source:
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('varfish-annotator-cli', max_pin="x") }}
 
 requirements:
   run:
diff --git a/recipes/varfish-cli/meta.yaml b/recipes/varfish-cli/meta.yaml
index cc5fa0f456492..6baa90f445ec8 100644
--- a/recipes/varfish-cli/meta.yaml
+++ b/recipes/varfish-cli/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.5.3" %}
-{% set sha256 = "ae8ee0314f0ebcfacf44518d7dcca4d9aba74d3fa50159fd0adbc04017671677" %}
+{% set version = "0.6.3" %}
+{% set sha256 = "7a7344b3d88b8ac303f0a54f7709fa528fe1555dd6e935c45e6ec452d955871d" %}
 
 package:
   name: varfish-cli
@@ -10,16 +10,20 @@ source:
   sha256: '{{sha256}}'
 
 build:
-  script: python -m pip install --no-deps --ignore-installed .
-  noarch: python 
-  number: 0
+  noarch: python
+  number: 2
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
+  entry_points:
+    - varfish-cli = varfish_cli.__main__:main
+  run_exports:
+    - {{ pin_subpackage('varfish-cli', max_pin="x.x") }}
 
 requirements:
   host:
     - python >=3
     - pip
   run:
-    - python >=3
+    - python >=3.9
     - attrs
     - cattrs
     - jsonschema
@@ -29,9 +33,11 @@ requirements:
     - tqdm
     - tabulate
     - polyleven
+    - pydantic >=2.0,<3.0
     - python-dateutil
     - simplejson
     - typeguard
+    - typer
 
 test:
   imports:
diff --git a/recipes/varfish-server-worker/meta.yaml b/recipes/varfish-server-worker/meta.yaml
index 1e544f9ea71fd..dc77bd2febe35 100644
--- a/recipes/varfish-server-worker/meta.yaml
+++ b/recipes/varfish-server-worker/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "0.10.0" %}
+{% set version = "0.11.0" %}
 
 package:
   name: varfish-server-worker
@@ -7,10 +7,12 @@ package:
 build:
   number: 0
   skip: True # [osx]
+  run_exports:
+    - {{ pin_subpackage("varfish-server-worker", max_pin="x.x") }}
 
 source:
-  url: https://github.com/bihealth/varfish-server-worker/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 3e9ff59341ffbabc8fa3aca9255645df01a4a18c12e043551be78f600617e96a
+  url: https://github.com/varfish-org/varfish-server-worker/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 81e7c2a35115989eef9e71bd08b56837fea73ac5fe4e6b09115f687d3013915a
 
 requirements:
   build:
@@ -35,7 +37,7 @@ test:
     - varfish-server-worker --help
 
 about:
-  home: https://github.com/bihealth/varfish-server-worker
+  home: https://github.com/varfish-org/varfish-server-worker
   license: MIT
   summary: |
     Rust-based tool for the heavy lifting in varfish-server.
diff --git a/recipes/varlociraptor/meta.yaml b/recipes/varlociraptor/meta.yaml
index 35eec98677dbc..5d96d31208fd7 100644
--- a/recipes/varlociraptor/meta.yaml
+++ b/recipes/varlociraptor/meta.yaml
@@ -1,22 +1,24 @@
-{% set version = "8.3.0" %}
+{% set name = "varlociraptor" %}
+{% set version = "8.4.8" %}
 
 package:
-  name: varlociraptor
+  name: {{ name }}
   version: {{ version }}
 
-build:
-  number: 1
-
 source:
   url: https://github.com/varlociraptor/varlociraptor/archive/v{{ version }}.tar.gz
-  sha256: 3f11ac692a416ed32537c7ebf72547a62b0a7c6ed1d316325944c3b02b624337
+  sha256: 98b2af2b97ee0ebd54c243de21b7eb33a137a6008a3939f70130e56dbf1db5e4
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("varlociraptor", max_pin="x") }}
 
 requirements:
   build:
     - {{ compiler('c') }}
     - {{ compiler('cxx') }}
     - {{ compiler('rust') }}
-    - rust >=1.54
     - pkg-config
     - make
     - cmake
@@ -37,7 +39,16 @@ test:
     - varlociraptor -h
 
 about:
-  home: https://varlociraptor.github.io
-  license: GPLv3
-  license_family: GPL
-  summary: Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
+  home: "https://github.com/varlociraptor/varlociraptor"
+  license: "GPL-3.0-or-later"
+  license_family: GPL3
+  summary: "Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control."
+  dev_url: "https://github.com/varlociraptor/varlociraptor"
+  doc_url: "https://varlociraptor.github.io"
+
+extra:
+  additional-platforms:
+    - linux-aarch64
+  identifiers:
+    - biotools:varlociraptor
+    - doi:10.1186/s13059-020-01993-6
diff --git a/recipes/varscan/meta.yaml b/recipes/varscan/meta.yaml
index 291c82db7048d..3d7cd30bbe787 100644
--- a/recipes/varscan/meta.yaml
+++ b/recipes/varscan/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "varscan" %}
-{% set version = "2.4.4" %}
-{% set sha256hash = "fb23b72ab676fb5a89bd02091c2b6c9aff210b96bee04d9dee6aef4d8b72814d" %}
+{% set version = "2.4.6" %}
+{% set sha256hash = "e827230b47a96cab035c5c7178e5089921a1e1c8d1e4836a6b02ff88e3a4c2ab" %}
 
 package:
   name: {{ name|lower }}
@@ -12,8 +12,10 @@ about:
   summary: variant detection in massively parallel sequencing data
 
 build:
-  number: 1
+  number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x.x") }}
 
 source:
   url: https://github.com/dkoboldt/varscan/raw/master/VarScan.v{{ version }}.jar
diff --git a/recipes/varscan/varscan.sh b/recipes/varscan/varscan.sh
index 794e43eb7a194..682f470a2bc94 100755
--- a/recipes/varscan/varscan.sh
+++ b/recipes/varscan/varscan.sh
@@ -27,7 +27,7 @@ fi
 
 # extract memory and system property Java arguments from the list of provided arguments
 # http://java.dzone.com/articles/better-java-shell-script
-default_jvm_mem_opts="-Xms512m -Xmx1g"
+default_jvm_mem_opts="-Xms1g -Xmx2g"
 jvm_mem_opts=""
 jvm_prop_opts=""
 pass_args=""
diff --git a/recipes/varvamp/meta.yaml b/recipes/varvamp/meta.yaml
index 1b0cf414faea1..f058276c11216 100644
--- a/recipes/varvamp/meta.yaml
+++ b/recipes/varvamp/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "varvamp" %}
-{% set version = "0.9" %}
+{% set version = "1.2.0" %}
 
 package:
   name: {{ name|lower }}
@@ -7,14 +7,16 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/varvamp-{{ version }}.tar.gz
-  sha256: feb79e754f18960fa1ca0ba234bd543892ebfd876b2b1de338cd5ed74302e890
+  sha256: 5c9fe4f1c458812808a1d08ce2e6f5166b5bc5f136f15bdcde99a496f05fd07b
 
 build:
   entry_points:
     - varvamp = varvamp.command:main
   noarch: python
-  script: {{ PYTHON }} -m pip install . -vv
+  script: {{ PYTHON }} -m pip install . --no-deps -vvv
   number: 0
+  run_exports:
+    - {{ pin_subpackage('varvamp', max_pin="x") }}
 
 requirements:
   host:
@@ -28,6 +30,8 @@ requirements:
     - pandas >=1.4.4
     - numpy >=1.23.3
     - seqfold >=0.7.15
+    - blast >=2.13.0
+
 
 test:
   imports:
diff --git a/recipes/vcf-validator/LICENSE b/recipes/vcf-validator/LICENSE
new file mode 100644
index 0000000000000..6b0b1270ff0ca
--- /dev/null
+++ b/recipes/vcf-validator/LICENSE
@@ -0,0 +1,203 @@
+
+                                 Apache License
+                           Version 2.0, January 2004
+                        http://www.apache.org/licenses/
+
+   TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
+
+   1. Definitions.
+
+      "License" shall mean the terms and conditions for use, reproduction,
+      and distribution as defined by Sections 1 through 9 of this document.
+
+      "Licensor" shall mean the copyright owner or entity authorized by
+      the copyright owner that is granting the License.
+
+      "Legal Entity" shall mean the union of the acting entity and all
+      other entities that control, are controlled by, or are under common
+      control with that entity. For the purposes of this definition,
+      "control" means (i) the power, direct or indirect, to cause the
+      direction or management of such entity, whether by contract or
+      otherwise, or (ii) ownership of fifty percent (50%) or more of the
+      outstanding shares, or (iii) beneficial ownership of such entity.
+
+      "You" (or "Your") shall mean an individual or Legal Entity
+      exercising permissions granted by this License.
+
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+      including but not limited to software source code, documentation
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+
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+
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+      defend, and hold each Contributor harmless for any liability
+      incurred by, or claims asserted against, such Contributor by reason
+      of your accepting any such warranty or additional liability.
+
+   END OF TERMS AND CONDITIONS
+
+   APPENDIX: How to apply the Apache License to your work.
+
+      To apply the Apache License to your work, attach the following
+      boilerplate notice, with the fields enclosed by brackets "[]"
+      replaced with your own identifying information. (Don't include
+      the brackets!)  The text should be enclosed in the appropriate
+      comment syntax for the file format. We also recommend that a
+      file or class name and description of purpose be included on the
+      same "printed page" as the copyright notice for easier
+      identification within third-party archives.
+
+   Copyright [yyyy] [name of copyright owner]
+
+   Licensed under the Apache License, Version 2.0 (the "License");
+   you may not use this file except in compliance with the License.
+   You may obtain a copy of the License at
+
+       http://www.apache.org/licenses/LICENSE-2.0
+
+   Unless required by applicable law or agreed to in writing, software
+   distributed under the License is distributed on an "AS IS" BASIS,
+   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+   See the License for the specific language governing permissions and
+   limitations under the License.
+
diff --git a/recipes/vcf-validator/LICENSE_ODB b/recipes/vcf-validator/LICENSE_ODB
new file mode 100644
index 0000000000000..52e36215fc329
--- /dev/null
+++ b/recipes/vcf-validator/LICENSE_ODB
@@ -0,0 +1,71 @@
+
+ODB License Exception for vcf-validator (Validator for the Variant Call
+Format (VCF)) Software
+                            Version 1.0
+
+1. Intent
+
+The intent of this License Exception is to allow the vcf-validator software
+to use ODB without the "copyleft" restrictions that would normally be
+imposed by the GPL, the license under which ODB is distributed.
+
+Specifically, the intent is to allow you to use the original vcf-validator
+software in your open source or proprietary works without imposing
+any additional restrictions to the terms and conditions of the
+Apache 2.0 license used by vcf-validator.
+
+If you wish to modify the vcf-validator software in such a way that it
+requires changes to the persistent object model handled by ODB, you can
+continue enjoying the terms of this exception provided that you are
+prepared to release your modifications under Apache 2.0 or another open
+source license and you obtain a separate license exception for your
+modifications from Code Synthesis Tools CC.
+
+While this exception is specific to vcf-validator, any open source software
+project licensed under a more liberal than the GPL license can obtain
+a similar exception free of charge by contacting Code Synthesis Tools CC.
+
+2. Definitions
+
+"Original Software" is the vcf-validator software, Copyright (c) EMBL -
+European Bioinformatics Institute, distributed under the terms of the
+Apache 2.0 license, and available to any third party from:
+
+  https://github.com/ebivariation/vcf-validator
+
+"ODB-Extended Software" are any modifications to the Original Software
+that require additions or changes to the persistent object model of
+the Original Software that is handled by ODB.
+
+"Work Based on the Original Software" is any derivative work under the
+copyright law that is either based on the Original Software or any
+modified version of the Original Software that does not constitute
+ODB-Extended Software.
+
+"Work Based on the ODB-Extended Software" is any derivative work under
+the copyright law that is based on any modified version of the Original
+Software that constitutes ODB-Extended Software.
+
+3. Legal Terms and Conditions
+
+As a special exception to the terms and conditions of version 2 of the
+GPL you may use the ODB runtime libraries in Original Software and in
+Works Based on the Original Software and distribute the resulting works
+in object code or executable form and without making source code for
+such works available to any third party, provided that all of the
+following conditions are met:
+
+  a) Original Software was licensed as a whole at no charge to all third
+     parties under the terms of the Apache 2.0 license.
+
+  b) The ODB runtime libraries in Works Based on the Original Software
+     are used solely for the purpose of supporting the functionality of
+     the Original Software.
+
+The same exception does not apply automatically to ODB-Extended Software
+or Works Based on the ODB-Extended Software. If you wish to enjoy this
+exception for such works, then you will need to license ODB-Extended
+Software at no charge to all third parties under the terms of the Apache 2.0
+license or another open source license. You will also need to obtain a
+separate License Exception for ODB-Extended Software from Code Synthesis
+Tools CC.
diff --git a/recipes/vcf-validator/build.sh b/recipes/vcf-validator/build.sh
new file mode 100644
index 0000000000000..acd838e4eac4f
--- /dev/null
+++ b/recipes/vcf-validator/build.sh
@@ -0,0 +1,11 @@
+mkdir -p ${PREFIX}/bin
+# Check if linux or osx
+if [ -z ${OSX_ARCH+x} ]; then
+  mv vcf_validator_linux ${PREFIX}/bin/vcf_validator
+  mv vcf_assembly_checker_linux ${PREFIX}/bin/vcf_assembly_checker
+else
+  mv vcf_validator_macos ${PREFIX}/bin/vcf_validator
+  mv vcf_assembly_checker_macos ${PREFIX}/bin/vcf_assembly_checker
+fi
+
+chmod 755 ${PREFIX}/bin/vcf_assembly_checker ${PREFIX}/bin/vcf_validator
diff --git a/recipes/vcf-validator/meta.yaml b/recipes/vcf-validator/meta.yaml
new file mode 100644
index 0000000000000..252a24c4013d0
--- /dev/null
+++ b/recipes/vcf-validator/meta.yaml
@@ -0,0 +1,44 @@
+{% set name = "vcf-validator" %}
+{% set version = "0.9.6" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  - url: https://github.com/EBIvariation/vcf-validator/releases/download/v{{ version }}/vcf_validator_linux        # [linux]
+    sha256: 33fc99334e77a90e99415daebfa877a9bc0375a3d7c18809082ace64d8373cdd                                       # [linux]
+  - url: https://github.com/EBIvariation/vcf-validator/releases/download/v{{ version }}/vcf_assembly_checker_linux # [linux]
+    sha256: 7913a6b3f12fdf5a66c98026ef144be4f8964f981f80eca4b509e06e6b8282ab                                       # [linux]
+  - url: https://github.com/EBIvariation/vcf-validator/releases/download/v{{ version }}/vcf_validator_macos        # [osx]
+    sha256: 68f50e38323260dcd77e236c27872e1a0eb5c6407736baf003cbc755c87bab94                                       # [osx]
+  - url: https://github.com/EBIvariation/vcf-validator/releases/download/v{{ version }}/vcf_assembly_checker_macos # [osx]
+    sha256: afb7383468fa08d597fc8f7588918dbcdafc8d6d41eb7d33d37ae71a30860cb7                                       # [osx]
+
+build:
+  script:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+test:
+  commands:
+    - vcf_validator --help
+    - vcf_assembly_checker --help
+
+about:
+  home: https://github.com/EBIVariation/vcf-validator
+  summary: EBI EVA - Validation tool to ensure VCF specification compliance
+  license: Apache-2.0
+  license_file:
+   - LICENSE
+   - LICENSE_ODB
+
+extra:
+  recipe-maintainers:
+    - apriltuesday
+    - tcezard
+    - ebi-variation
+  skip-lints:
+    - should_be_noarch_generic
+    - should_not_be_noarch_source
diff --git a/recipes/vcf2circos/meta.yaml b/recipes/vcf2circos/meta.yaml
index 7cbf766897956..afff96a9bfe2f 100644
--- a/recipes/vcf2circos/meta.yaml
+++ b/recipes/vcf2circos/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "vcf2circos" %}
-{% set version = "1.1" %}
-{% set sha256 = "658a5cf87a6e293246d1b3063870812b23621571c24bdb3276a73520629b1760" %}
+{% set version = "1.1.1" %}
+{% set sha256 = "51305686728685d2cfd934031e5d93079f6887480f90779667186ff24a2cf76f" %}
 
 package:
   name: {{ name }}
diff --git a/recipes/vcf2cytosure/meta.yaml b/recipes/vcf2cytosure/meta.yaml
new file mode 100644
index 0000000000000..72983aa7275bf
--- /dev/null
+++ b/recipes/vcf2cytosure/meta.yaml
@@ -0,0 +1,44 @@
+{% set name = "vcf2cytosure" %}
+{% set version = "0.9.1" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: 96e89005869cf6cfa42bba30f6063721326107a490efca150cf65cc65eb0e9d6
+
+build:
+  noarch: python
+  number: 1
+  entry_points:
+    - vcf2cytosure=vcf2cytosure.vcf2cytosure:main
+  script: "{{ PYTHON }} -m pip install . -vv"
+  run_exports:
+    - {{ pin_subpackage("vcf2cytosure", max_pin="x.x") }}
+
+requirements:
+  host:
+    - pip
+    - python
+  run:
+    - cyvcf2
+    - lxml
+    - pandas
+    - python
+
+test:
+  imports:
+    - tests
+    - vcf2cytosure
+    - vcf2cytosure.constants
+  commands:
+    - vcf2cytosure --help
+
+about:
+  home: "https://github.com/NBISweden/vcf2cytosure"
+  license: MIT
+  license_family: MIT
+  summary: "Convert VCF with structural variations to CytoSure format"
+
diff --git a/recipes/vcf2db/meta.yaml b/recipes/vcf2db/meta.yaml
index 2e3d15adaf1ec..7be4b6ebd145b 100644
--- a/recipes/vcf2db/meta.yaml
+++ b/recipes/vcf2db/meta.yaml
@@ -4,7 +4,9 @@ package:
 
 build:
   noarch: generic
-  number: 1
+  number: 3
+  run_exports: 
+    - {{ pin_subpackage("vcf2db", max_pin="x") }}
 
 source:
   url: https://github.com/quinlan-lab/vcf2db/archive/89f3a30d14550763488fdd1eec121f5b2dbf4f7e.tar.gz
@@ -18,11 +20,11 @@ requirements:
     - nomkl # [unix]
     - snappy
     - python-snappy
-    - sqlalchemy
-    - cyvcf2
+    - sqlalchemy <2.0
+    - cyvcf2 >=0.30
     - numpy
     - peddy >=0.2.9
-    - geneimpacts >0.2.0
+    - geneimpacts >=0.3
 
 test:
   commands:
diff --git a/recipes/vcf2maf-umccr/build.sh b/recipes/vcf2maf-umccr/build.sh
new file mode 100644
index 0000000000000..3729b42ec6125
--- /dev/null
+++ b/recipes/vcf2maf-umccr/build.sh
@@ -0,0 +1,4 @@
+#!/bin/bash
+
+mkdir -p ${PREFIX}/bin
+chmod +x *.pl && cp *.pl $PREFIX/bin
diff --git a/recipes/vcf2maf-umccr/meta.yaml b/recipes/vcf2maf-umccr/meta.yaml
new file mode 100644
index 0000000000000..1b5177298718e
--- /dev/null
+++ b/recipes/vcf2maf-umccr/meta.yaml
@@ -0,0 +1,36 @@
+{% set version = "1.6.21.20230511" %}
+{% set sha256 = "76e203b8b76389e78097231b0feb9909051a2238294ae21b403606c9fe0a3011" %}
+
+package:
+  name: vcf2maf-umccr
+  version: '{{version}}'
+
+build:
+  noarch: generic
+  number: 0
+
+source:
+  url: https://github.com/umccr/vcf2maf/archive/v{{ version }}.tar.gz
+  sha256: '{{ sha256 }}'
+
+requirements:
+  run:
+    - perl
+    - samtools
+    - htslib
+
+test:
+  commands:
+    - vcf2maf.pl --help
+
+about:
+  home: https://github.com/umccr/vcf2maf/
+  license: Apache-2.0
+  summary: Convert a VCF into a MAF where each variant is annotated to only one of
+    all possible gene isoforms
+
+  license_family: Apache
+extra:
+  notes: |-
+    This package incorporates the latest changes of the original tool [vcf2maf](https://github.com/mskcc/vcf2maf)
+    from its main branch but released from the [umccr fork](https://github.com/umccr/vcf2maf/). 
diff --git a/recipes/vcf2parquet/meta.yaml b/recipes/vcf2parquet/meta.yaml
index f5b5e47b394db..ad6addc3938bc 100644
--- a/recipes/vcf2parquet/meta.yaml
+++ b/recipes/vcf2parquet/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.4.1" %}
-{% set sha256 = "c0eb32658e4ec05433b265c78c158e216e2e464a15174615c1e6d39380019a46" %}
+{% set version = "0.5.0" %}
+{% set sha256 = "61cba26e418d33af994bc85c4e5174ed115fc15bcf94f4f54e14a31ab839c82f" %}
 
 package:
   name: vcf2parquet
@@ -11,17 +11,18 @@ source:
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage('vcf2parquet', max_pin="x.x") }}
 
 requirements:
   build:
     - {{ compiler("c") }}
-    - rust
+    - {{ compiler("rust") }}
     - pkg-config  # [osx]
   host:
     - xz
     - zlib
     - bzip2
-  run:
 
 test:
   commands:
diff --git a/recipes/vcf2variants/meta.yaml b/recipes/vcf2variants/meta.yaml
index 06461f2201e7e..1e86cba1234ab 100644
--- a/recipes/vcf2variants/meta.yaml
+++ b/recipes/vcf2variants/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "vcf2variants" %}
-{% set version = "0.3" %}
+{% set version = "1.3" %}
 
 package:
   name: '{{ name|lower }}'
@@ -7,12 +7,14 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 8780f3cf331e76dde7add454dbf346b38a69eb0b398b8b751f07413824f1b9a4
+  sha256: 152f8e97ae8d23613672e93b33713e4fb620a92bbae72bd052e75e2fc409db12
 
 build:
   number: 0
   script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('vcf2variants', max_pin="x") }}
 
 requirements:
   host:
@@ -20,11 +22,15 @@ requirements:
     - pip
   run:
     - python >=3.6
-    - cyvcf2
+    - natsort
+    - pysam
+    - vcfphasesets
 
 test:
   commands:
     - vcf2variants -h
+  imports:
+    - vcf2variants
 
 about:
   home: https://github.com/varda/varda2_preprocessing
diff --git a/recipes/vcfanno/meta.yaml b/recipes/vcfanno/meta.yaml
index 1696d595df24f..5432278f824fa 100644
--- a/recipes/vcfanno/meta.yaml
+++ b/recipes/vcfanno/meta.yaml
@@ -1,17 +1,21 @@
-{% set version = '0.3.3' %}
+{% set version = '0.3.5' %}
 
 package:
   name: vcfanno
   version: {{ version }}
 
 source:
-  url: https://github.com/brentp/vcfanno/releases/download/v{{ version }}/vcfanno_osx # [osx]
-  sha256: 66dfacb03d9915956e0477d51ca460966f6f88a07bd797e5f4bcfc4b8ee42cda # [osx]
-  url: https://github.com/brentp/vcfanno/releases/download/v{{ version }}/vcfanno_linux64 # [linux]
-  sha256: f8ea2924379a2777b6ae9d4b8da9c6260601febf21a6dab4b3e8c16d4af0f6b3 # [linux]
+  - url: https://github.com/brentp/vcfanno/releases/download/v{{ version }}/vcfanno_osx # [osx]
+    sha256: 2f51637c6358fec7e7fcb1dbbfc1b2cbbed6ff47a7c6b7ef386f1152ff74829f # [osx]
+  - url: https://github.com/brentp/vcfanno/releases/download/v{{ version }}/vcfanno_linux64 # [linux and x86_64]
+    sha256: a98a9be6dfec32b039b21563659c4ecf0ec884ad3cdfaf0732b44c3857520592 # [linux and x86_64]
+  - url: https://github.com/brentp/vcfanno/releases/download/v{{ version }}/vcfanno_linux_aarch64  # [linux and aarch64]
+    sha256: 732007523998f9a48071fa3dd75d4492c972dd786861b0a5d36cd0669f5d5288 # [linux and aarch64]
 
 build:
-  number: 0
+  number: 1
+  run_exports:
+    - {{ pin_subpackage("vcfanno", max_pin="x") }}
 
 requirements:
 
@@ -20,6 +24,8 @@ test:
     - "vcfanno 2>&1 | grep 'vcfanno'"
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   skip-lints:
     - should_be_noarch_generic  # uses per platform binaries
     - should_not_be_noarch_source  # uses binaries
diff --git a/recipes/vcfdist/build.sh b/recipes/vcfdist/build.sh
new file mode 100644
index 0000000000000..ba9402cf841f3
--- /dev/null
+++ b/recipes/vcfdist/build.sh
@@ -0,0 +1,9 @@
+#!/bin/bash
+
+export CPATH="${PREFIX}/include"
+export CPLUS_INCLUDE_PATH="${PREFIX}/include"
+export LD_LIBRARY_PATH="${PREFIX}/lib"
+
+cd src && make
+install -d "${PREFIX}/bin"
+install vcfdist "${PREFIX}/bin"
diff --git a/recipes/vcfdist/conda_build_config.yaml b/recipes/vcfdist/conda_build_config.yaml
new file mode 100644
index 0000000000000..50a90b77e33c2
--- /dev/null
+++ b/recipes/vcfdist/conda_build_config.yaml
@@ -0,0 +1,4 @@
+htslib:
+  - 1.17
+pin_run_as_build:
+  htslib: x.x
diff --git a/recipes/vcfdist/meta.yaml b/recipes/vcfdist/meta.yaml
new file mode 100644
index 0000000000000..791f3bdcbb03e
--- /dev/null
+++ b/recipes/vcfdist/meta.yaml
@@ -0,0 +1,42 @@
+{% set version = "2.5.2" %}
+{% set sha256 = "c0c7ef16df051755234a13f2a5316f7963ccaf5d06c588c16838febaa839bbe1" %}
+
+package:
+  name: vcfdist
+  version: {{ version }}
+
+source:
+  url: https://github.com/TimD1/vcfdist/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("vcfdist", max_pin="x.x") }}
+
+requirements:
+  build: 
+    - make
+    - {{ compiler('cxx') }}
+  host:
+    - htslib
+  run:
+    - htslib
+
+test:
+  commands:
+    - vcfdist --version
+
+about:
+  summary: 'vcfdist: benchmarking phased germline variant calls in VCF format'
+  home: https://github.com/TimD1/vcfdist
+  license: GPL-3.0-only
+  license_family: GPL3
+  license_file: LICENSE
+  doc_url: https://github.com/TimD1/vcfdist/wiki
+
+extra:
+  maintainers:
+    - TimD1
+  identifiers:
+    - doi:10.5281/zenodo.8368282
diff --git a/recipes/vcflib/backport_pr_394.patch b/recipes/vcflib/backport_pr_394.patch
new file mode 100644
index 0000000000000..b2be5bdcc49da
--- /dev/null
+++ b/recipes/vcflib/backport_pr_394.patch
@@ -0,0 +1,20 @@
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index 088605d..286c9fc 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -462,6 +462,15 @@ if (NOT BUILD_ONLY_LIB)
+   target_link_libraries(vcfallelicprimitives PUBLIC ${WFALIB})
+   target_link_libraries(vcfcleancomplex PUBLIC ${WFALIB})
+   target_link_libraries(vcfparsealts PUBLIC ${WFALIB})
++  target_link_libraries(vcfstreamsort PUBLIC ${WFALIB})
++  target_link_libraries(vcfuniq PUBLIC ${WFALIB})
++  target_link_libraries(vcfcreatemulti PUBLIC ${WFALIB})
++  target_link_libraries(vcfld PUBLIC ${WFALIB})
++  target_link_libraries(vcfecho PUBLIC ${WFALIB})
++  target_link_libraries(vcfuniqalleles PUBLIC ${WFALIB})
++  target_link_libraries(vcffilter PUBLIC ${WFALIB})
++  target_link_libraries(permuteGPAT++ PUBLIC ${WFALIB})
++  target_link_libraries(vcfintersect PUBLIC ${WFALIB})
+   target_link_libraries(vcfroc PUBLIC ${WFALIB})
+   target_link_libraries(vcfstats PUBLIC ${WFALIB})
+   target_link_libraries(vcfwave PUBLIC ${WFALIB})
diff --git a/recipes/vcflib/build.sh b/recipes/vcflib/build.sh
index 508ad993694d4..ac929087a86e7 100644
--- a/recipes/vcflib/build.sh
+++ b/recipes/vcflib/build.sh
@@ -1,17 +1,20 @@
 #!/bin/bash
 set -ex
 
-if [ `uname` == Darwin ]; then
+OS=$(uname)
+ARCH=$(uname -m)
+
+if [ "${OS}" == "Darwin" ]; then
 	echo $(pwd)/zig-macos-x86_64-*
 	export PATH="$(pwd)/zig-macos-x86_64-0.10.1:${PATH}"
-	else
-	echo $(pwd)/zig-linux-x86_64-*
-	export PATH="$(pwd)/zig-linux-x86_64-0.10.1:${PATH}"
+else
+	echo $(pwd)/zig-linux-${ARCH}-*
+	export PATH="$(pwd)/zig-linux-${ARCH}-0.10.1:${PATH}"
 fi
 
 export INCLUDES="-I${PREFIX}/include -I. -Ihtslib -Itabixpp -I\$(INC_DIR)"
 export LIBPATH="-L${PREFIX}/lib -L. -Lhtslib -Ltabixpp"
-export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib -lhts -ltabixpp -lpthread -lz -lm -llzma -lbz2 -fopenmp"
+export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib -lhts -ltabixpp -lpthread -lz -lm -llzma -lbz2 -fopenmp -lwfa2"
 export CXXFLAGS="${CXXFLAGS} -O3 -D_FILE_OFFSET_BITS=64"
 
 sed -i.bak 's/CFFFLAGS:= -O3/CFFFLAGS=-O3 -D_FILE_OFFSET_BITS=64 -std=c++0x/' contrib/smithwaterman/Makefile
@@ -24,7 +27,7 @@ sed -i.bak 's/g++/$(CXX) $(CXXFLAGS)/g' contrib/multichoose/Makefile
 sed -i.bak 's/g++/$(CXX) $(CXXFLAGS)/g' contrib/intervaltree/Makefile
 
 # MacOSX Build fix: https://github.com/chapmanb/homebrew-cbl/issues/14
-if [ "$(uname)" == "Darwin" ]; then
+if [ "${OS}" == "Darwin" ]; then
 	sed -i.bak 's/LDFLAGS=-Wl,-s/LDFLAGS=/' contrib/smithwaterman/Makefile
 	export LDFLAGS="${LDFLAGS} -Wl,-rpath,${PREFIX}/lib"
 	export CXXFLAGS="${CXXFLAGS} -D_LIBCPP_ENABLE_CXX17_REMOVED_FEATURES"
@@ -36,15 +39,7 @@ pkg-config --list-all
 cmake -S . -B build \
 	-DZIG=ON -DOPENMP=ON -DWFA_GITMODULE=OFF \
 	-DCMAKE_BUILD_TYPE=Release \
-	-DBUILD_SHARED_LIBS=ON \
 	-DCMAKE_INSTALL_PREFIX="${PREFIX}" \
-	-DCMAKE_CXX_COMPILER="${CXX}" \
-	-DCMAKE_CXX_FLAGS="${CXXFLAGS}" \
-	-DCMAKE_C_COMPILER="${CC}" \
-	-DCMAKE_INCLUDE_PATH="${PREFIX}/include" \
-	-DCMAKE_LIBRARY_PATH="${PREFIX}/lib"
+	-DCMAKE_CXX_FLAGS="${CXXFLAGS}"
 
 cmake --build build/ --target install -j 4 -v
-
-#cp -n ../scripts/* $PREFIX/bin
-#cp -n -r ../src/simde $PREFIX/include/
diff --git a/recipes/vcflib/meta.yaml b/recipes/vcflib/meta.yaml
index 4987517e68da0..03b091e5953c1 100644
--- a/recipes/vcflib/meta.yaml
+++ b/recipes/vcflib/meta.yaml
@@ -12,19 +12,22 @@ source:
   patches:
     - pkg-config.patch
     - shared_lib.patch
+    - backport_pr_394.patch  # TODO remove once PR https://github.com/vcflib/vcflib/pull/394 is merged and released
     - tabix.patch
-- url: https://ziglang.org/download/0.10.1/zig-linux-x86_64-0.10.1.tar.xz  # [linux]
-  sha256: 6699f0e7293081b42428f32c9d9c983854094bd15fee5489f12c4cf4518cc380  # [linux]
-  folder: zig-linux-x86_64-0.10.1  # [linux]
+- url: https://ziglang.org/download/0.10.1/zig-linux-x86_64-0.10.1.tar.xz  # [linux and x86_64]
+  sha256: 6699f0e7293081b42428f32c9d9c983854094bd15fee5489f12c4cf4518cc380  # [linux and x86_64]
+  folder: zig-linux-x86_64-0.10.1  # [linux and x86_64]
+- url: https://ziglang.org/download/0.10.1/zig-linux-aarch64-0.10.1.tar.xz  # [linux and aarch64]
+  sha256: db0761664f5f22aa5bbd7442a1617dd696c076d5717ddefcc9d8b95278f71f5d  # [linux and aarch64]
+  folder: zig-linux-aarch64-0.10.1  # [linux and aarch64]
 - url: https://ziglang.org/download/0.10.1/zig-macos-x86_64-0.10.1.tar.xz  # [osx]
   sha256: 02483550b89d2a3070c2ed003357fd6e6a3059707b8ee3fbc0c67f83ca898437  # [osx]
   folder: zig-macos-x86_64-0.10.1  # [osx]
 
 build:
-  number: 1
-  skip: True  # [osx]
+  number: 6
   run_exports:
-    - {{ pin_subpackage('vcflib') }}
+    - {{ pin_subpackage('vcflib', max_pin="x") }}
 
 requirements:
   build:
@@ -34,13 +37,13 @@ requirements:
     - pybind11-global
     # python really only used as a build tool; no ${PREFIX}/bin/python needed.
     - python >=3
+    - pkg-config
   host:
     - libgomp  # [linux]
     - llvm-openmp  # [osx]
     - zlib
     - htslib
     - tabixpp
-    - pkg-config
     - wfa2-lib
   run:
     - python >=3
@@ -51,20 +54,30 @@ requirements:
     - jsoncpp
     - wfa2-lib
 
-
 test:
+  requires:
+    - wget
   commands:
     - "vcfwave -h"
     - "vcffirstheader < /dev/null"
     - "vcfsort < /dev/null"
+    - "vcfstreamsort --help"
+    - "wget -O test.vcf https://raw.githubusercontent.com/vcflib/vcflib/a610b7444daab0c9e974d9a001550bf8dd644770/test/data/regression/vcffilter_2.vcf"
+    - "vcfuniq test.vcf"
 
 about:
   home: https://github.com/vcflib/vcflib
   license: MIT
+  license_family: MIT
+  license_file: LICENSE
   summary: Command-line tools for manipulating VCF files
-  maintainers: jpuritz
 
 extra:
+  additional-platforms:
+    - linux-aarch64
+  recipe-maintainers:
+    - jpuritz
   identifiers:
     - biotools:vcflib
     - doi:10.1371/journal.pcbi.1009123
+    - usegalaxy-eu:vcfsort
diff --git a/recipes/vcfphasesets/meta.yaml b/recipes/vcfphasesets/meta.yaml
new file mode 100644
index 0000000000000..a7e53659eb6f4
--- /dev/null
+++ b/recipes/vcfphasesets/meta.yaml
@@ -0,0 +1,40 @@
+{% set name = "vcfphasesets" %}
+{% set version = "0.3" %}
+
+package:
+  name: '{{ name|lower }}'
+  version: '{{ version }}'
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: 2a6b8fc061d42bb4fa0d2c717978f90137a55a956928b535d6ea55c2dbd1be81
+
+build:
+  number: 0
+  script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage('vcfphasesets', max_pin="x") }}
+
+
+requirements:
+  host:
+    - python >=3.7
+    - pip
+  run:
+    - python >=3.7
+    - pysam
+
+test:
+  imports:
+    - vcfphasesets
+
+about:
+  home: https://github.com/LUMC/vcfphasesets
+  license: MIT
+  license_family: MIT
+  summary: Get variants as phase sets from a VCF file using pysam.
+
+extra:
+  recipe-maintainers:
+    - marksantcroos
diff --git a/recipes/vcfpy/meta.yaml b/recipes/vcfpy/meta.yaml
index fff3b36cc93c2..a16833b549124 100644
--- a/recipes/vcfpy/meta.yaml
+++ b/recipes/vcfpy/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.13.6" %}
-{% set sha256 = "778afe1dfec387206ddac754186e0777c326e0c300496b7631ade532532ce0bb" %}
+{% set version = "0.13.8" %}
+{% set sha256 = "e7d00965105e7ca9567299f073ad60c6bbfc78d685d25ba33353988af9b33160" %}
 
 package:
   name: vcfpy
@@ -10,16 +10,18 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  script: python -m pip install --no-deps --ignore-installed .
   noarch: python
   number: 0
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
+  run_exports:
+    - {{ pin_subpackage('vcfpy', max_pin="x.x") }}
 
 requirements:
   host:
-    - python >=3
+    - python >=3.8
     - pip
   run:
-    - python >=3
+    - python >=3.8
     - pysam >=0.10.0
 
 test:
diff --git a/recipes/vcfsim/meta.yaml b/recipes/vcfsim/meta.yaml
new file mode 100644
index 0000000000000..5a7af5429f034
--- /dev/null
+++ b/recipes/vcfsim/meta.yaml
@@ -0,0 +1,54 @@
+{% set name = "vcfsim" %}
+{% set version = "1.0.11.alpha" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/Pie115/VCFSimulator-SamukLab/archive/{{ version }}.tar.gz
+  sha256: 9263d88be02a25a4ff9033413ecd2c72807f5ea532434092a35abf96b8858aa0
+
+build:
+  noarch: python
+  entry_points:
+    - vcfsim=vcfsim.__main__:main
+  script: {{ PYTHON }} -m pip install . -vv
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('vcfsim', max_pin="x") }} 
+    
+requirements:
+  host:
+    - python >=3.6
+    - pip
+    - setuptools
+    - numpy
+    - pandas
+    - msprime
+    - ipython  # Include this only if IPython features are used outside notebooks
+
+  run:
+    - python >=3.6
+    - numpy
+    - pandas
+    - msprime
+    - ipython  # Include this only if IPython features are used outside notebooks
+
+test:
+  imports:
+    - vcfsim
+  commands:
+    - vcfsim --help
+
+about:
+  home: https://github.com/Pie115/VCFSimulator-SamukLab
+  license: MIT
+  license_file: LICENSE.txt
+  summary: "Script for generating simulated VCF's leveraging a coalescent simulating backend."
+  description: |
+      "VCFSim is a new command-line tool for generating simulated VCF's(variant call format files for encoding genetic data). Leveraging a coalescent simulating backend and providing an interface from Msprime coalescent simulating package to pandas. VCF's can now be easily simulated with just a few command line arguments!"
+
+extra:
+  recipe-maintainers:
+    - Pie115
diff --git a/recipes/vcftools/meta.yaml b/recipes/vcftools/meta.yaml
index 296c3146b59a1..fc5557f5b5c3b 100644
--- a/recipes/vcftools/meta.yaml
+++ b/recipes/vcftools/meta.yaml
@@ -13,7 +13,9 @@ source:
     - patch
 
 build:
-  number: 9
+  number: 10
+  run_exports:
+     - {{ pin_subpackage('vcftools', max_pin='x.x') }}
 
 requirements:
   build:
@@ -41,5 +43,7 @@ about:
   summary: A set of tools written in Perl and C++ for working with VCF files.
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:vcftools
diff --git a/recipes/vclean/meta.yaml b/recipes/vclean/meta.yaml
new file mode 100644
index 0000000000000..d70333f25020c
--- /dev/null
+++ b/recipes/vclean/meta.yaml
@@ -0,0 +1,53 @@
+{% set name = "vclean" %}
+{% set version = "0.0.2" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/vclean-{{ version }}.tar.gz
+  sha256: 3624ccf7b8160af1584cc7fa99b7036fb81818a1941b9fd31729ce85c48cce73
+
+build:
+  entry_points:
+    - vclean = vclean.cli:cli
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage("vclean", max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.9
+    - flit-core >=3.2,<4
+    - pip
+  run:
+    - python >=3.9
+    - pandas
+    - numpy
+    - matplotlib-base
+    - seaborn
+    - scikit-learn
+    - lightgbm
+    - biopython
+    - checkv
+    - seqkit
+    - kmer-jellyfish
+    - prodigal
+    - mmseqs2
+
+test:
+  commands:
+    - vclean --help
+
+about:
+  summary: 'vClean: Assessing the contamination of viral genomes'
+  home: https://github.com/TsumaR/vclean
+  license: GPL-3.0-only
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - TsumaR
diff --git a/recipes/vcontact3/meta.yaml b/recipes/vcontact3/meta.yaml
new file mode 100644
index 0000000000000..7fe1af8435c22
--- /dev/null
+++ b/recipes/vcontact3/meta.yaml
@@ -0,0 +1,62 @@
+{% set name = "vcontact3" %}
+{% set version = "3.0.0.b38" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://bitbucket.org/MAVERICLab/vcontact3/get/{{ version }}.tar.gz"
+  sha256: fc56f0c3ae4d3016287e4ab9ad86847b089e7c8eca78fa393fe8eba965c182fc
+
+build:
+  number: 0
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage('vcontact3', max_pin='x') }}
+  script: "{{ PYTHON }} -m pip install --no-deps ."
+
+requirements:
+  host:
+    - pip
+    - python >=3.9,<3.11
+  run:
+    - python >=3.9,<3.11
+    - numpy >=1.23.5
+    - pandas >=2.1.1
+    - scikit-learn >=1.2.2
+    - seaborn >=0.12.1
+    - matplotlib-base >=3.7.1
+    - scipy >=1.10.1
+    - jenkspy >=0.3.2
+    - networkx >=3.1
+    - upsetplot >=0.7.0
+    - tqdm >=4.65.0
+    - ete3 >=3.1.3
+    - jinja2 >=3.0.3
+    - scikit-bio >=0.5.8
+    - pyrodigal >=2.3.0
+    - pyrodigal-gv >=0.3.1
+    - joblib >=1.2.0
+    - python-igraph >=0.10.4
+    - psutil >=5.9.5
+    - biopython >=1.81
+    - swifter >=1.3.4
+    - pyarrow >=11.0.0
+    - dill >=0.3.6
+    - pytables >=3.8.0
+    - markupsafe >=2.0.1
+    - mmseqs2 >=15.6f452
+    - bioinfokit >=2.1.3
+
+test:
+  commands:
+    - vcontact3 --help
+
+about:
+  home: https://bitbucket.org/MAVERICLab/vcontact3
+  license: GPLv3
+  license_file: LICENSE
+  license_family: GPL
+  summary: Viral Contig Automatic Clustering and Taxonomy
+  doc_url: https://bitbucket.org/MAVERICLab/vcontact3/src/master/README.md
\ No newline at end of file
diff --git a/recipes/vembrane/meta.yaml b/recipes/vembrane/meta.yaml
index 31bd417db94f3..5b3851289ab76 100644
--- a/recipes/vembrane/meta.yaml
+++ b/recipes/vembrane/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.0.3" %}
+{% set version = "1.0.5" %}
 
 package:
   name: vembrane
@@ -6,26 +6,28 @@ package:
 
 source:
   url: https://pypi.io/packages/source/v/vembrane/vembrane-{{ version }}.tar.gz
-  sha256: c788e7077a10b388f5fb2f78f79a99025d1d5871af1bc1655e98d3b6a21c97d7
+  sha256: c0afc7dc69dd32ac95c45ba679b5751c2d63170e4876dbc0ce860d44f6b6c18e
 
 build:
   number: 0
   entry_points:
     - vembrane = vembrane.cli:main
   noarch: python
-  script: {{ PYTHON }} -m pip install . -vv
+  script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv
+  run_exports:
+    - {{ pin_subpackage('vembrane', max_pin="x") }}
 
 requirements:
   host:
     - pip
-    - poetry >=0.12
+    - poetry >=1.5.1
     - python >=3.8
   run:
     - asttokens >=2.0,<3.0
     - intervaltree >=3.0,<4.0
     - numpy >=1.23,<2.0
     - pysam >=0.20,<0.21
-    - python >=3.8,<4
+    - python >=3.8
     - pyyaml >=6.0,<7
 
 test:
@@ -38,6 +40,7 @@ test:
 about:
   home: https://github.com/vembrane/vembrane
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary: Filter VCF/BCF files with Python expressions.
 
diff --git a/recipes/venndata/meta.yaml b/recipes/venndata/meta.yaml
new file mode 100644
index 0000000000000..3e488e22a69e7
--- /dev/null
+++ b/recipes/venndata/meta.yaml
@@ -0,0 +1,38 @@
+{% set name = "venndata" %}
+{% set version = "0.1.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/venndata-{{ version }}.tar.gz
+  sha256: 7b497132fbc9797b8caa20a470b8bc61671cdf3d9ed62a53da9d6bd15bc23def
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.6
+    - pip
+  run:
+    - python >=3.6
+
+test:
+  imports:
+    - venndata
+
+about:
+  home: https://github.com/mandalsubhajit/venndata
+  summary: Package for plotting Venn diagrams with more than 3 sets
+  license: MIT
+  license_family: MIT
+
+extra:
+  recipe-maintainers:
+    - heylf
diff --git a/recipes/verkko/build.sh b/recipes/verkko/build.sh
index fbfdf138b3220..c03607f1ff961 100644
--- a/recipes/verkko/build.sh
+++ b/recipes/verkko/build.sh
@@ -10,11 +10,10 @@ if [ "$(uname)" == "Darwin" ]; then
     mkdir -p $HOME/.cargo/registry/index/
 fi
 
-
 pushd src
 make clean && make -j$CPU_COUNT
 popd
 
 mkdir -p "$PREFIX/bin"
-cp -r bin/* $PREFIX/bin/
-cp -r lib/* $PREFIX/lib/
+cp -rf bin/* $PREFIX/bin/
+cp -rf lib/* $PREFIX/lib/
diff --git a/recipes/verkko/meta.yaml b/recipes/verkko/meta.yaml
index fd7b45be93eb6..460a299b91ba7 100644
--- a/recipes/verkko/meta.yaml
+++ b/recipes/verkko/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "verkko" %}
-{% set version = "1.4" %}
+{% set version = "2.1" %}
 
 package:
   name: {{ name|lower }}
@@ -7,15 +7,16 @@ package:
 
 source:
   url: https://github.com/marbl/{{ name }}/releases/download/v{{ version }}/{{ name }}-v{{ version }}.tar.gz
-  md5: 6cc9374d06c5150bf055c5667d81592e
+  sha256: e989710a43cc6f721938f6393d20c8a674b110cd74a7c27f23f4d06a9dd78e9f
 
   patches:
     - version.patch
+    - osx_availability.patch # [osx]
 
 build:
   number: 0
-  # Temporarily skip building on OSX due to mambabuild keyerror: https://github.com/bioconda/bioconda-recipes/issues/41526
-  skip: True  # [osx]
+  run_exports:
+      - {{ pin_subpackage('verkko', max_pin="x.x") }}
 
 requirements:
   build:
@@ -23,30 +24,43 @@ requirements:
     - llvm-openmp  # [osx]
     - libgomp      # [linux]
     - {{ compiler('cxx') }}
-    - rust >=1.66
+    - rust >=1.74
   host:
+    - llvm-openmp  # [osx]
+    - libgomp      # [linux]
     - gsl
+    - zlib
   run:
     - python >=3.7
     - perl >=5.6
+    - seqtk
     - parasail-python >=1.3.3
+    - networkx >=2.6.3
     - biopython
-    - snakemake-minimal >=7.8.0
-    - graphaligner >=1.0.17  # [linux]
-    - graphaligner >=1.0.17b # [osx]
-    - mbg >=1.0.15
+    - snakemake-minimal >=7.8.0,<8.0
+    - graphaligner >=1.0.19
     - findutils >=4.6.0
-    - mashmap >=2.0
+    - mashmap >=3.0.6
     - winnowmap >=2.0
+    - bwa >=0.7.17
+    - minimap2 >=2.28
+    - samtools >=1.17
 
 test:
   requires:
     - curl
   commands:
-     - verkko --version
+    - verkko --version
 
 about:
   home: https://github.com/marbl/verkko
   license: CC0
   license_file: README.licenses
-  summary: Assembler for hybrid combinations of long reads
+  summary: "A hybrid genome assembly pipeline developed for telomere-to-telomere assembly of PacBio HiFi or Oxford Nanopore Duplex and Oxford Nanopore simplex reads."
+  dev_url: "https://github.com/marbl/verkko"
+  doc_url: "https://github.com/marbl/verkko/blob/master/README.md"
+
+extra:
+  identifiers:
+    - doi:10.1038/s41587-023-01662-6
+    - usegalaxy-eu:verkko
diff --git a/recipes/verkko/osx_availability.patch b/recipes/verkko/osx_availability.patch
new file mode 100644
index 0000000000000..22bdc376bf98c
--- /dev/null
+++ b/recipes/verkko/osx_availability.patch
@@ -0,0 +1,67 @@
+diff --git a/src/MBG/makefile b/src/MBG/makefile
+index 0c0113b..c6fd847 100644
+--- a/src/MBG/makefile
++++ b/src/MBG/makefile
+@@ -1,7 +1,7 @@
+ PLATFORM=$(shell uname -s)
+ 
+ GPP=$(CXX)
+-CPPFLAGS=-Wall -Wextra -std=c++17 -O3 -g -Izstr/src -Iparallel-hashmap/parallel_hashmap/ -Wno-unused-parameter -Icxxopts/include -Iconcurrentqueue `pkg-config --cflags zlib`
++CPPFLAGS=-Wall -Wextra -std=c++17 -O3 -g -Izstr/src -Iparallel-hashmap/parallel_hashmap/ -Wno-unused-parameter -Icxxopts/include -Iconcurrentqueue `pkg-config --cflags zlib` -D_LIBCPP_DISABLE_AVAILABILITY
+ 
+ ODIR=obj
+ BINDIR=bin
+diff --git a/src/hifioverlapper/MBG/makefile b/src/hifioverlapper/MBG/makefile
+index 0c0113b..c6fd847 100644
+--- a/src/hifioverlapper/MBG/makefile
++++ b/src/hifioverlapper/MBG/makefile
+@@ -1,7 +1,7 @@
+ PLATFORM=$(shell uname -s)
+ 
+ GPP=$(CXX)
+-CPPFLAGS=-Wall -Wextra -std=c++17 -O3 -g -Izstr/src -Iparallel-hashmap/parallel_hashmap/ -Wno-unused-parameter -Icxxopts/include -Iconcurrentqueue `pkg-config --cflags zlib`
++CPPFLAGS=-Wall -Wextra -std=c++17 -O3 -g -Izstr/src -Iparallel-hashmap/parallel_hashmap/ -Wno-unused-parameter -Icxxopts/include -Iconcurrentqueue `pkg-config --cflags zlib` -D_LIBCPP_DISABLE_AVAILABILITY
+ 
+ ODIR=obj
+ BINDIR=bin
+diff --git a/src/hifioverlapper/makefile b/src/hifioverlapper/makefile
+index 0bc9ee7..0f53de7 100644
+--- a/src/hifioverlapper/makefile
++++ b/src/hifioverlapper/makefile
+@@ -1,5 +1,7 @@
++PLATFORM=$(shell uname -s)
++
+ GPP=$(CXX)
+-CPPFLAGS=-Wall -Wextra -std=c++17 -O3 -g -Izstr/src -Iparallel-hashmap/parallel_hashmap/ -Icxxopts/include -Wno-unused-parameter `pkg-config --cflags zlib` -IMBG/src -Iconcurrentqueue
++CPPFLAGS=-Wall -Wextra -std=c++17 -O3 -g -Izstr/src -Iparallel-hashmap/parallel_hashmap/ -Icxxopts/include -Wno-unused-parameter `pkg-config --cflags zlib` -IMBG/src -Iconcurrentqueue -D_LIBCPP_DISABLE_AVAILABILITY
+ 
+ ODIR=obj
+ BINDIR=bin
+@@ -14,7 +16,11 @@ DEPS = $(patsubst %, $(SRCDIR)/%, $(_DEPS))
+ _OBJ = MatchIndex.o MinimizerIterator.o TwobitString.o ReadStorage.o UnitigKmerCorrector.o UnitigStorage.o ReadMatchposStorage.o
+ OBJ = $(patsubst %, $(ODIR)/%, $(_OBJ))
+ 
+-LINKFLAGS = $(CPPFLAGS) -Wl,-Bstatic $(LIBS) -Wl,-Bdynamic -Wl,--as-needed -lpthread -pthread -static-libstdc++
++ifeq ($(PLATFORM),Linux)
++   LINKFLAGS = $(CPPFLAGS) -Wl,-Bstatic $(LIBS) -Wl,-Bdynamic -Wl,--as-needed -lpthread -pthread -static-libstdc++
++else
++   LINKFLAGS = $(CPPFLAGS) $(LIBS) -lpthread -pthread -static-libstdc++
++endif
+ 
+ VERSION := Branch $(shell git rev-parse --abbrev-ref HEAD) commit $(shell git rev-parse HEAD) $(shell git show -s --format=%ci)
+ 
+diff --git a/src/verkko.sh b/src/verkko.sh
+index 1744b4a..6016aea 100755
+--- a/src/verkko.sh
++++ b/src/verkko.sh
+@@ -1324,8 +1324,8 @@ if [ "x$withhic" = "xTrue" -o "x$withporec" = "xTrue" ] ; then
+     fi
+     cp -p emptyfile ${newoutd}/emptyfile
+     cd $newoutd
+-    sed -i 's/runRukkiHIC/cnspath/g' snakemake.sh
+-    sed -i 's/HiC_rdnascaff/cnspath/g' snakemake.sh
++    sed -i.bak 's/runRukkiHIC/cnspath/g' snakemake.sh
++    sed -i.bak 's/HiC_rdnascaff/cnspath/g' snakemake.sh
+     ./snakemake.sh
+     cp *.fasta ../../
+     cp *.layout ../../
diff --git a/recipes/verkko/run_test.sh b/recipes/verkko/run_test.sh
index e81c1cd069ad5..95ed12e451477 100644
--- a/recipes/verkko/run_test.sh
+++ b/recipes/verkko/run_test.sh
@@ -2,6 +2,14 @@
 # stop on error
 set -exu -o pipefail
 
+if [ ! -n "${PREFIX-}" -a "${PREFIX+defined}" != defined  ]; then
+   echo "Prefix undefined, setting it to be path to script"
+   PREFIX=$(dirname "$0")
+   PREFIX=$(dirname "$PREFIX")
+
+   export PATH=$PREFIX/bin:$PATH
+fi
+
 # taken from yacrd recipe, see: https://github.com/bioconda/bioconda-recipes/blob/2b02c3db6400499d910bc5f297d23cb20c9db4f8/recipes/yacrd/build.sh
 if [ "$(uname)" == "Darwin" ]; then
 
@@ -11,18 +19,19 @@ if [ "$(uname)" == "Darwin" ]; then
     mkdir -p $HOME/.cargo/registry/index/
 fi
 
-# download and run a small assembly
-which perl
-rm -f ./hifi.fastq.gz ./ont.fastq.gz
-curl -L https://obj.umiacs.umd.edu/sergek/shared/ecoli_hifi_subset24x.fastq.gz -o hifi.fastq.gz
-curl -L https://obj.umiacs.umd.edu/sergek/shared/ecoli_ont_subset50x.fastq.gz -o ont.fastq.gz
-if [ "$(uname)" == "Darwin" ]; then
-   verkko -d asm --no-correction --hifi ./hifi.fastq.gz
-else
-   verkko -d asm --no-correction --hifi ./hifi.fastq.gz --nano ./ont.fastq.gz
-fi
-if [ -s asm/assembly.fasta ]; then 
-   python $PREFIX/lib/verkko/scripts/circularize_ctgs.py -p 10 -f 0.01 -o asm/assembly_circular.fasta --min-ovl 1000 asm/assembly.fasta
+# download and run a small assembly, skip alignment of ONT on OSX to save time
+rm -rf asm empty* ./hifi.fastq.gz ./ont.fastq.gz
+
+curl -L https://obj.umiacs.umd.edu/sergek/shared/ecoli_reference_test.fasta.gz -o reference.fasta.gz
+touch empty.fasta
+
+ONT="--nano ./reference.fasta.gz"
+
+verkko --unitig-abundance 0 --no-correction -d asm --hifi ./reference.fasta.gz $ONT > run.out 2>&1
+
+if [ -s asm/assembly.fasta ]; then
+   head -n 2 asm/assembly.fasta > asm/tmp.fasta
+   python $PREFIX/lib/verkko/scripts/circularize_ctgs.py -p 5 -f 0.01 -o asm/assembly_circular.fasta --min-ovl 1 asm/tmp.fasta
 fi
 
 if [ ! -s asm/assembly_circular.fasta ]; then
@@ -31,5 +40,25 @@ if [ ! -s asm/assembly_circular.fasta ]; then
    exit 1
 fi
 
+verkko -d asm --hifi reference.fasta.gz $ONT --hic1 empty.fasta --hic2 empty.fasta
+
+if [[ ! -s asm/assembly.unassigned.fasta || -s asm/assembly.haplotype1.fasta || -s asm/assembly.haplotype2.fasta ]]; then
+   echo "Error: verkko hic assembly test failed!"
+   tail -n +1 `find asm -name *.err`
+   exit 1
+fi
+
+#now test trio
+rm -rf asm/8-* asm/6-layoutContigs/ asm/7-consensus/ asm/assembly.* asm/6-rukki/
+$PREFIX/lib/verkko/bin/meryl count compress k=21 memory=4 threads=8 output empty1.meryl reference.fasta.gz
+$PREFIX/lib/verkko/bin/meryl greater-than 10 empty1.meryl/ output empty2.meryl
+verkko -d asm --hifi reference.fasta.gz  $ONT --hap-kmers empty1.meryl empty2.meryl trio
+
+if [ ! -s asm/assembly.haplotype1.fasta ]; then
+   echo "Error: verkko trio assembly test failed!"
+   tail -n +1 `find asm -name *.err`
+   exit 1
+fi
+
 echo "Finished verkko assembly test!"
 exit 0
diff --git a/recipes/verkko/version.patch b/recipes/verkko/version.patch
index 834db2486b8e9..65a9a043a84a7 100644
--- a/recipes/verkko/version.patch
+++ b/recipes/verkko/version.patch
@@ -2,12 +2,32 @@ diff --git a/src/Makefile b/src/Makefile
 index 5f33ff4..25c2285 100644
 --- a/src/Makefile
 +++ b/src/Makefile
-@@ -693,7 +693,7 @@ $(eval $(call INCLUDE_SUBMAKEFILE,main.mk))
+@@ -301,7 +301,7 @@
+         $${OBJS}: SRC_CFLAGS   := $${$${TGT}_CFLAGS} $${SRC_CFLAGS}
+         $${OBJS}: SRC_CXXFLAGS := $${$${TGT}_CXXFLAGS} $${SRC_CXXFLAGS}
+         $${OBJS}: SRC_DEFS     := $$(addprefix -D,$${$${TGT}_DEFS} $${SRC_DEFS})
+-        $${OBJS}: SRC_INCDIRS  := $$(addprefix -I,\
++        $${OBJS}: SRC_INCDIRS  := $$(addprefix -iquote,\
+                                      $${$${TGT}_INCDIRS} $${SRC_INCDIRS})
+     endif
+
+@@ -389,7 +389,7 @@
+ ALL_TGTS :=
+ DEFS :=
+ DIR_STACK :=
+-INCDIRS :=
++INCDIRS := utgcns/libboost
+ TGT_STACK :=
+
+ # Discover our OS and architecture.  These were previously used to set
+@@ -703,7 +703,7 @@
+
  # Perform post-processing on global variables as needed.
  DEFS := $(addprefix -D,${DEFS})
- INCDIRS := $(addprefix -I,$(call CANONICAL_PATH,${INCDIRS}))
--VERSION := verkko release v1.4
+-INCDIRS := $(addprefix -I,$(call CANONICAL_PATH,${INCDIRS}))
+-VERSION := verkko release v2.1
++INCDIRS := $(addprefix -isystem,$(call CANONICAL_PATH,${INCDIRS}))
 +VERSION := bioconda $(PKG_NAME) bioconda $(PKG_VERSION)
- 
+
  # Define the "all" target (which simply builds all user-defined targets) as the
  # default goal.
diff --git a/recipes/versionix/meta.yaml b/recipes/versionix/meta.yaml
new file mode 100644
index 0000000000000..6e3ae36edb194
--- /dev/null
+++ b/recipes/versionix/meta.yaml
@@ -0,0 +1,42 @@
+{% set name = "versionix" %}
+{% set version = "0.2.4" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/versionix-{{ version }}.tar.gz
+  sha256: f78960fff3863d5bf02fa8b6e841a4350b5fa2f5ffff409a94083b66f729cf75
+
+build:
+  entry_points:
+    - versionix = versionix.scripts:main
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('versionix', max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.8
+    - pip
+    - poetry-core >=1.0.0
+  run:
+    - python >=3.8.0
+    - click >=8.1.7
+    - rich-click
+
+test:
+  imports:
+    - versionix
+  commands:
+    - versionix --help
+
+about:
+  home: https://github.com/sequana/versionix
+  summary: Get version of any tools
+  license: BSD-3-Clause
+  license_family: BSD
+  license_file: LICENSE
diff --git a/recipes/verticall/meta.yaml b/recipes/verticall/meta.yaml
index 81e5cae2549c5..8ebdf82c911b0 100644
--- a/recipes/verticall/meta.yaml
+++ b/recipes/verticall/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "Verticall" %}
-{% set version = "0.4.1" %}
+{% set version = "0.4.2" %}
 
 package:
   name: {{ name|lower }}
@@ -7,14 +7,16 @@ package:
 
 source:
   url: https://github.com/rrwick/Verticall/archive/v{{ version }}.tar.gz
-  sha256: 13d1a2013611b1061530e473dcd2c4f888cb38d2f2e3e9b85a4837a36f4278d7
+  sha256: 9fad321dc02a6484d1362fab36984d9f478ed6b95c60657d5a5e71f374962b98
 
 build:
   entry_points:
     - verticall = verticall.__main__:main
   noarch: python
-  script: {{ PYTHON }} -m pip install . -vv
+  script: {{ PYTHON }} -m pip install . --no-deps -vvv
   number: 0
+  run_exports:
+    - {{ pin_subpackage('verticall', max_pin="x") }}
 
 requirements:
   host:
@@ -34,17 +36,16 @@ test:
   imports:
     - verticall
   commands:
-    - pip check
     - verticall --help
     - minimap2 --help
-  requires:
-    - pip
 
 about:
   home: https://github.com/rrwick/Verticall
-  license: GPL-3.0
+  license: GPL-3.0-or-later
+  license_family: GPL3
   license_file: LICENSE
   summary: "A tool for building recombination-free trees"
+  doc_url: https://github.com/rrwick/Verticall/wiki
 
 extra:
   recipe-maintainers:
diff --git a/recipes/veryfasttree/meta.yaml b/recipes/veryfasttree/meta.yaml
index 1a65179cfdf1a..34bdf32369805 100644
--- a/recipes/veryfasttree/meta.yaml
+++ b/recipes/veryfasttree/meta.yaml
@@ -1,29 +1,31 @@
 {% set name = "veryFastTree" %}
-{% set version = "4.0.2" %}
-{% set sha256 = "5e1f2d81a2a91463f0efb9b95621f772fca77d5d083f0f009602cde46c635562" %}
+{% set version = "4.0.03" %}
+{% set sha256 = "40c6b2f94d7d94f0a58b4736174c091f1131c83a8a090c0776c1789f3c13ef8a" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
-source: 
+source:
   url: https://github.com/citiususc/{{ name|lower }}/archive/refs/tags/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
 
 build:
   number: 0
   skip: True # [osx]
+  run_exports:
+    - {{ pin_subpackage('veryfasttree', max_pin="x") }}
 
 requirements:
   build:
     - {{ compiler('cxx') }}
-    - libgomp      
+    - libgomp
     - cmake
-    - make     
-  host:    
-    - libgomp 
+    - make
+  host:
+    - libgomp
   run:
-    - libgomp  
+    - libgomp
 
 test:
   commands:
diff --git a/recipes/vg/meta.yaml b/recipes/vg/meta.yaml
index e280cc0547526..d901ef21a8cb6 100644
--- a/recipes/vg/meta.yaml
+++ b/recipes/vg/meta.yaml
@@ -1,21 +1,25 @@
 {% set name = "vg" %}
-{% set version = "1.49.0" %}
+{% set version = "1.56.0" %}
 
 package:
   name: {{ name }}
   version: {{ version }}
 
 source:
-  url: https://github.com/vgteam/vg/releases/download/v{{ version }}/vg
-  sha256: b5ef38666ff6e5ee90dbcba91a4573776c3eb6ff8f95796f752e4ea6c02de139
+  - url: https://github.com/vgteam/vg/releases/download/v{{ version }}/vg       # [linux and x86_64]
+    sha256: 8b82e300a386d6bf34d0d1025a7dc806b2b95bb57bd063226fc3984e920710e4    # [linux and x86_64]
+  - url: https://github.com/vgteam/vg/releases/download/v{{ version }}/vg-arm64 # [linux and aarch64]
+    sha256: 35693928a3aa049809fd906088f54594940e2de20e8b396cffe2b6b6b73a9e7a    # [linux and aarch64]
 
 build:
-  number: 0
+  number: 1
   skip: true  # [osx]
   script:
     - mkdir -p ${PREFIX}/bin
-    - cp vg ${PREFIX}/bin/
+    - cp vg* ${PREFIX}/bin/vg
     - chmod +x ${PREFIX}/bin/vg
+  run_exports:
+    - {{ pin_subpackage('vg', max_pin="x") }}
 
 test:
   commands:
@@ -24,8 +28,11 @@ test:
 about:
   home: https://github.com/vgteam/vg
   license: MIT
+  license_family: MIT
   summary: Variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   skip-lints:
     - should_be_noarch_generic
diff --git a/recipes/vgan/meta.yaml b/recipes/vgan/meta.yaml
index 387e0125543cc..81d26a67d4c0d 100644
--- a/recipes/vgan/meta.yaml
+++ b/recipes/vgan/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "vgan" %}
-{% set version = "2.0.2" %}
+{% set version = "3.0.0" %}
 
 package:
   name: {{ name }}
@@ -7,11 +7,13 @@ package:
 
 source:
   url: https://github.com/grenaud/vgan/releases/download/v{{ version }}/vgan
-  sha256: 4340e61ff3c4ca8f8eca388604cc004d23d9399a4df860116f3cab342599d14e
+  sha256: 7a8fb93618fc0efe49f33e998a4f46fbd004c63c3326fa9c0e414940418c1c7b
 
 build:
   number: 0
   skip: true  # [osx]
+  run_exports:
+    - {{ pin_subpackage('vgan', max_pin="x") }}
   script:
     - mkdir -p ${PREFIX}/bin
     - cp vgan ${PREFIX}/bin/
@@ -19,6 +21,7 @@ build:
     - mkdir -p ${PREFIX}/share/vgan/
     - mkdir -p ${PREFIX}/share/vgan/hcfiles/
     - mkdir -p ${PREFIX}/share/vgan/euka_dir/
+    - mkdir -p ${PREFIX}/share/vgan/soibean_dir/
     - mkdir -p ${PREFIX}/share/vgan/damageProfiles/
     - wget -nc -l1 --recursive --no-parent -P ${PREFIX}/share/vgan/ ftp://ftp.healthtech.dtu.dk:/public/haplocart/hcfiles/
     - mv -fv ${PREFIX}/share/vgan/ftp.healthtech.dtu.dk/public/haplocart/hcfiles/* ${PREFIX}/share/vgan/hcfiles
diff --git a/recipes/viennarna/meta.yaml b/recipes/viennarna/meta.yaml
index 004802146c9c0..e8213a5142c1e 100644
--- a/recipes/viennarna/meta.yaml
+++ b/recipes/viennarna/meta.yaml
@@ -1,12 +1,13 @@
-{% set version = "2.6.3" %}
-{% set sha256 = "07b5c3abcda3076f3dd2041a67df5aa25d21468ae41f18eaecf3aaa7751ab495" %}
+{% set version = "2.6.4" %}
+{% set sha256 = "d1259ce5809601a12b0dc9b724ea2c55806fece80d8d83ad417ea8a2dd574982" %}
 
 package:
   name: viennarna
   version: {{ version }}
 
 build:
-  number: 0
+  skip: True # [osx]
+  number: 1
   run_exports:
     # Ronny said VRNA is stable in x.x releases
     - {{ pin_subpackage('viennarna', max_pin='x.x') }}
@@ -45,3 +46,7 @@ about:
   license: custom
   license_file: COPYING
   summary: ViennaRNA package -- RNA secondary structure prediction and comparison
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/viguno/meta.yaml b/recipes/viguno/meta.yaml
index 070e91018abd5..cfeec69d90f06 100644
--- a/recipes/viguno/meta.yaml
+++ b/recipes/viguno/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "0.1.6" %}
-{% set sha256 = "c4696ba9dab271216b80c560f78cddf8e0010474b7d7b8b6c717e666fd13cebd" %}
+{% set version = "0.2.1" %}
+{% set sha256 = "00da4730a4dd63b05eeb8e7ae0b58ba829e7145cc41f0f9194470376f367b937" %}
 
 package:
   name: viguno
@@ -8,9 +8,11 @@ package:
 build:
   skip: True  # [osx]
   number: 0
+  run_exports:
+    - {{ pin_subpackage("viguno", max_pin="x.x") }}
 
 source:
-  url: https://github.com/bihealth/viguno/archive/v{{ version }}.tar.gz
+  url: https://github.com/varfish-org/viguno/archive/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
 
 requirements:
@@ -36,6 +38,6 @@ test:
     - viguno -h
 
 about:
-  home: https://github.com/bihealth/viguno
+  home: https://github.com/bihealth/varfish-org
   license: MIT
   summary: Lookup OMIM genes and HPO terms and compute similarities
diff --git a/recipes/viral_consensus/build.sh b/recipes/viral_consensus/build.sh
new file mode 100644
index 0000000000000..6637bb02284e0
--- /dev/null
+++ b/recipes/viral_consensus/build.sh
@@ -0,0 +1,5 @@
+#!/bin/bash
+
+make CXX="$CXX" INCLUDE="-I${PREFIX}/include -Ihtslib" RELEASEFLAGS="$CPPFLAGS $CXXFLAGS -O3 $LDFLAGS"
+mkdir -p $PREFIX/bin
+cp viral_consensus $PREFIX/bin/
diff --git a/recipes/viral_consensus/meta.yaml b/recipes/viral_consensus/meta.yaml
new file mode 100644
index 0000000000000..873dff8a59be7
--- /dev/null
+++ b/recipes/viral_consensus/meta.yaml
@@ -0,0 +1,43 @@
+{% set version = "0.0.5" %}
+
+package:
+  name: viral_consensus
+  version: {{ version }}
+
+build:
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('viral_consensus', max_pin="x.x.x") }}
+
+source:
+  url: https://github.com/niemasd/ViralConsensus/archive/refs/tags/{{ version }}.tar.gz
+  sha256: 798fa4d751b3b6b3cde9b6be1b2c55d469c71cd0d030b982980387e9a14011a9
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+    - make
+  host:
+    - htslib
+    - zlib
+
+about:
+  home: https://niema.net/ViralConsensus/
+  license: GPL-3.0-or-later
+  license_family: GPL3
+  license_file: LICENSE
+  summary: Fast viral consensus genome reconstruction
+  dev_url: https://github.com/niemasd/ViralConsensus
+
+test:
+  commands:
+    - viral_consensus --version
+
+extra:
+  identifiers:
+    - biotools:viral_consensus
+    - doi:10.1093/bioinformatics/btad317
+    - doi:10.1093/bioinformatics/btae018
+  maintainers:
+    - niemasd
diff --git a/recipes/viralmsa/build.sh b/recipes/viralmsa/build.sh
new file mode 100644
index 0000000000000..2832973a32048
--- /dev/null
+++ b/recipes/viralmsa/build.sh
@@ -0,0 +1,3 @@
+#!/bin/bash
+mkdir -p $PREFIX/bin
+cp ViralMSA.py $PREFIX/bin/
diff --git a/recipes/viralmsa/meta.yaml b/recipes/viralmsa/meta.yaml
new file mode 100644
index 0000000000000..acbbb36202cf5
--- /dev/null
+++ b/recipes/viralmsa/meta.yaml
@@ -0,0 +1,47 @@
+{% set version = "1.1.44" %}
+
+package:
+  name: viralmsa
+  version: {{ version }}
+
+build:
+  noarch: python
+  number: 1
+  run_exports:
+    - {{ pin_subpackage('viralmsa', max_pin="x.x.x") }}
+
+source:
+  url: https://github.com/niemasd/ViralMSA/archive/refs/tags/{{ version }}.tar.gz
+  sha256: a3f90307b86e6171beadc61bfc09309570d51d9b21085a6c74054b86a8991026
+
+requirements:
+  run:
+    - python >=3.7
+    - biopython
+    - bowtie2
+    - dragmap
+    - hisat2
+    - lra
+    - minimap2
+    - ngmlr
+    - star
+    - unimap
+    - wfmash
+    - winnowmap
+
+about:
+  home: https://github.com/niemasd/ViralMSA
+  license: GNU General Public License v3 (GPLv3)
+  license_file: LICENSE
+  summary: Reference-guided multiple sequence alignment of viral genomes
+
+test:
+  commands:
+    - ViralMSA.py -h
+
+extra:
+  identifiers:
+    - biotools:viralmsa
+    - doi:10.1093/bioinformatics/btaa743
+  maintainers:
+    - niemasd
diff --git a/recipes/vireosnp/meta.yaml b/recipes/vireosnp/meta.yaml
new file mode 100644
index 0000000000000..9e68523d7c8a4
--- /dev/null
+++ b/recipes/vireosnp/meta.yaml
@@ -0,0 +1,47 @@
+{% set name = "vireoSNP" %}
+{% set version = "0.5.8" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/vireoSNP-{{ version }}.tar.gz
+  sha256: f83f00a2d398f08735fc3b5cd9326027dfe89094c746eb53a03c7f0393788c65
+
+build:
+  entry_points:
+    - vireo = vireoSNP.vireo:main
+    - GTbarcode = vireoSNP.GTbarcode:main
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('vireosnp', max_pin="x.x.x") }}
+
+requirements:
+  host:
+    - python
+    - pip
+  run:
+    - python
+    - numpy >=1.9.0
+    - scipy >=1.4.0
+    - matplotlib-base
+
+test:
+  imports:
+    - vireoSNP
+  commands:
+    - pip check
+    - vireo --help
+    - GTbarcode --help
+  requires:
+    - pip
+
+about:
+  home: https://github.com/huangyh09/vireoSNP
+  summary: vireoSNP - donor deconvolution for multiplexed scRNA-seq data
+  license: Apache-2.0
+  license_file: LICENSE
+  doc_url: https://vireosnp.readthedocs.io/en/latest/
diff --git a/recipes/virheat/LICENSE b/recipes/virheat/LICENSE
new file mode 100644
index 0000000000000..f288702d2fa16
--- /dev/null
+++ b/recipes/virheat/LICENSE
@@ -0,0 +1,674 @@
+                    GNU GENERAL PUBLIC LICENSE
+                       Version 3, 29 June 2007
+
+ Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/>
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+THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY
+GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE
+USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF
+DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
+PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
+EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
+SUCH DAMAGES.
+
+  17. Interpretation of Sections 15 and 16.
+
+  If the disclaimer of warranty and limitation of liability provided
+above cannot be given local legal effect according to their terms,
+reviewing courts shall apply local law that most closely approximates
+an absolute waiver of all civil liability in connection with the
+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
+                     END OF TERMS AND CONDITIONS
+
+            How to Apply These Terms to Your New Programs
+
+  If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
+  To do so, attach the following notices to the program.  It is safest
+to attach them to the start of each source file to most effectively
+state the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+    <one line to give the program's name and a brief idea of what it does.>
+    Copyright (C) <year>  <name of author>
+
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+Also add information on how to contact you by electronic and paper mail.
+
+  If the program does terminal interaction, make it output a short
+notice like this when it starts in an interactive mode:
+
+    <program>  Copyright (C) <year>  <name of author>
+    This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+    This is free software, and you are welcome to redistribute it
+    under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License.  Of course, your program's commands
+might be different; for a GUI interface, you would use an "about box".
+
+  You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+<https://www.gnu.org/licenses/>.
+
+  The GNU General Public License does not permit incorporating your program
+into proprietary programs.  If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library.  If this is what you want to do, use the GNU Lesser General
+Public License instead of this License.  But first, please read
+<https://www.gnu.org/licenses/why-not-lgpl.html>.
diff --git a/recipes/virheat/meta.yaml b/recipes/virheat/meta.yaml
new file mode 100644
index 0000000000000..b760fed750475
--- /dev/null
+++ b/recipes/virheat/meta.yaml
@@ -0,0 +1,48 @@
+{% set name = "virheat" %}
+{% set version = "0.7" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/virheat-{{ version }}.tar.gz
+  sha256: 9f50dc2b7517c5e1bc1c1ee7170395147e06fb08016d7c99b30d3271d366f463
+
+build:
+  entry_points:
+    - virheat = virheat.command:main
+  noarch: python
+  script: {{ PYTHON }} -m pip install . --no-deps -vvv
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('virheat', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.9
+    - pip
+  run:
+    - python >=3.9
+    - matplotlib-base >=3.5.1,<=3.8.0
+    - pandas >=1.4.4
+    - numpy >=1.23.3
+
+test:
+  imports:
+    - virheat
+  commands:
+    - pip check
+    - virheat --help
+  requires:
+    - pip
+
+about:
+  home: https://github.com/jonas-fuchs/virHEAT
+  summary: Visualize microbial evolution at the SNP level by creating a heatmap from vcf files.
+  license: GPL-3.0-or-later
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - jonas-fuchs
diff --git a/recipes/viroconstrictor/meta.yaml b/recipes/viroconstrictor/meta.yaml
index 1c38d2f7eddaa..d34ea1322c12f 100644
--- a/recipes/viroconstrictor/meta.yaml
+++ b/recipes/viroconstrictor/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "ViroConstrictor" %}
-{% set version = "1.3.1" %}
+{% set version = "1.4.2" %}
 
 package:
   name: {{ name|lower }}
@@ -7,7 +7,7 @@ package:
 
 source:
   url: https://github.com/RIVM-bioinformatics/ViroConstrictor/archive/v{{ version }}.tar.gz
-  sha256: 7fae8e0552a8f33fa6f2942ed2872810e204f7e688db8b658c2bc568e1a43cee
+  sha256: 7b7f8c0f129b9fa1ccc8c374c7436b6065f7dea87ee6e0423d75fd7f04d81d29
 
 build:
   noarch: python
@@ -16,16 +16,17 @@ build:
     - viroconstrictor = ViroConstrictor.__main__:main
     - viroConstrictor = ViroConstrictor.__main__:main
     - Viroconstrictor = ViroConstrictor.__main__:main
-  script: {{ PYTHON }} -m pip install . -vv
+  script: {{ PYTHON }} -m pip install . --no-deps -vvv
   number: 0
+  run_exports:
+    - {{ pin_subpackage('viroconstrictor', max_pin="x") }}
 
 requirements:
   host:
     - python >=3.10
-    - snakemake-minimal >=7.15.2
-    - conda
-    - mamba
     - pip
+    - snakemake >=7.15.2, < 8
+    - conda
   run:
     - python >=3.10
     - urllib3
@@ -36,22 +37,19 @@ requirements:
     - openpyxl
     - pyyaml ==6.0
     - rich ==13.*
-    - snakemake-minimal >=7.15.2
-    - aminoextract >=0.2.1
-    - mamba
+    - snakemake >=7.15.2, < 8
+    - aminoextract ==0.3.1
     - conda
+    - mamba
 
 test:
   imports:
     - ViroConstrictor
   commands:
-    - pip check
     - ViroConstrictor --help
     - viroconstrictor --help
     - viroConstrictor --help
     - Viroconstrictor --help
-  requires:
-    - pip
 
 about:
   home: https://rivm-bioinformatics.github.io/ViroConstrictor/
diff --git a/recipes/virsorter/meta.yaml b/recipes/virsorter/meta.yaml
index 790e55ac52e01..2206ac44e79a2 100644
--- a/recipes/virsorter/meta.yaml
+++ b/recipes/virsorter/meta.yaml
@@ -10,7 +10,7 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 0      # must start from 0
+  number: 1      # must start from 0
   entry_points:
     - virsorter=virsorter.virsorter:cli
   noarch: python
@@ -18,16 +18,17 @@ build:
 
 requirements:
   host:
-    - python >=3.6
+    - python >=3.6,<=3.10
     - pip
   run:
-    - python >=3.6
+    - python >=3.6,<=3.10
     - ruamel.yaml =0.16
     - snakemake-minimal >=5.18,<=5.26
     - click >=7
     - git
     - cookiecutter
     - mamba
+    - conda-package-handling <=1.9
 
 test:
   imports:
diff --git a/recipes/virstrain/meta.yaml b/recipes/virstrain/meta.yaml
index 4cea9e5295616..62e80eec94e1d 100644
--- a/recipes/virstrain/meta.yaml
+++ b/recipes/virstrain/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "virstrain" %}
-{% set version = "1.13" %}
+{% set version = "1.17" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,15 +7,17 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: 35a2cfae54083288f0565145069c9bd4daecb60eb8831d3eae5f79d22c0ba3fb
+  sha256: 76b71f73eb6fc92f61e495ee28ada438092bb70e33cf6f5d211c9a82922fd7a9
 
 build:
-  number: 0
+  number: 1
   entry_points:
     - virstrain = VirStrain.VirStrain:main
     - virstrain_build = VirStrain.VirStrain_build:main
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
   noarch: python
+  run_exports:
+    - {{ pin_subpackage('virstrain', max_pin="x.x") }}
 
 requirements:
   host:
@@ -29,19 +31,22 @@ requirements:
     - pandas ==1.0.1
     - plotly ==3.10.0
     - python ==3.7.3
-    - pip
-    
+    - bowtie2
+
 test:
   imports:
     - VirStrain
   commands:
     - virstrain --help
     - virstrain_build --help
+    - virstrain_contig --help
+    - virstrain_merge --help
 
 about:
   home: https://github.com/liaoherui/VirStrain
   license: MIT
   license_family: MIT
+  license_file: LICENSE.txt
   summary: An RNA/DNA virus strain-level identification tool for short reads.
 
 extra:
diff --git a/recipes/virulencefinder/meta.yaml b/recipes/virulencefinder/meta.yaml
index 0393ba33a0f8d..e57a9257fee59 100644
--- a/recipes/virulencefinder/meta.yaml
+++ b/recipes/virulencefinder/meta.yaml
@@ -11,8 +11,10 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 0
+  number: 1
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('virulencefinder', max_pin="x") }}
 
 requirements:
   run:
@@ -22,10 +24,12 @@ requirements:
     - tabulate
     - cgecore
     - blast
+    - git
 
 test:
   commands:
     - virulencefinder.py --help
+    - git --help
 
 about:
   home: https://bitbucket.org/genomicepidemiology/virulencefinder
diff --git a/recipes/fcsparser/build.sh b/recipes/virusrecom/build.sh
old mode 100755
new mode 100644
similarity index 75%
rename from recipes/fcsparser/build.sh
rename to recipes/virusrecom/build.sh
index 0456c5ca37e6b..c65b9bb44d4b1
--- a/recipes/fcsparser/build.sh
+++ b/recipes/virusrecom/build.sh
@@ -1,4 +1,4 @@
 #!/bin/bash
 
-$PYTHON setup.py install --single-version-externally-managed --record=record.txt
-
+# build 
+$PYTHON setup.py install --single-version-externally-managed --record=record.txt
\ No newline at end of file
diff --git a/recipes/virusrecom/meta.yaml b/recipes/virusrecom/meta.yaml
new file mode 100644
index 0000000000000..c6bd13b6864e9
--- /dev/null
+++ b/recipes/virusrecom/meta.yaml
@@ -0,0 +1,49 @@
+{% set name = "virusrecom" %}
+{% set version = "1.1.5" %}
+
+package:
+  name: "{{ name }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: 88747b2590163526baa57115d649db6e0310ace792fab9e6b50275d71265f2ee
+
+build:
+  number: 0
+  noarch: python
+  run_exports:
+    - {{ pin_subpackage('virusrecom', max_pin="x") }}
+
+
+requirements:
+  host:
+    - python >=3.5,!=3.8
+    - pip
+    - setuptools
+
+  run:
+    - matplotlib-base
+    - numpy >=1.19.3
+    - pandas >=1.1.5
+    - scipy >=1.5.4
+    - psutil >=5.9.1
+    - python >=3.5,!=3.8
+    - openpyxl >=3.0.5
+
+test:
+  commands:
+    - virusrecom --help
+
+about:
+  home: "https://github.com/ZhijianZhou01/virusrecom"
+  license: "LGPL-2.1-or-later"
+  license_family: "LGPL"
+  license_file: LICENSE
+  summary: "An information-theory-based method for recombination detection of viral lineages."
+
+extra:
+  identifiers:
+    - doi:10.1093/bib/bbac513
+  recipe-maintainers:
+    - ZhijianZhou01
diff --git a/recipes/visor/meta.yaml b/recipes/visor/meta.yaml
index 32de871baf975..ef36b8029c154 100644
--- a/recipes/visor/meta.yaml
+++ b/recipes/visor/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "VISOR" %}
-{% set version = "1.1.2" %}
+{% set version = "1.1.2.1" %}
 
 package:
   name: {{ name|lower }}
@@ -7,7 +7,7 @@ package:
 
 source:
   url: https://github.com/davidebolo1993/VISOR/archive/v{{ version }}.tar.gz
-  sha256: 90a33f99a05374d58072a129f40a84972bf34a0a65db501216daa607af64322b
+  sha256: 8cb8c21414c70f037263b70d217ed89532ffa26ca0a50ea0a239e5a87c1d6b0e
 
 build:
   entry_points:
@@ -15,6 +15,8 @@ build:
   noarch: python
   script: {{ PYTHON }} -m pip install . -vv
   number: 0
+  run_exports:
+    - {{ pin_subpackage('visor', max_pin="x") }}
 
 requirements:
   host:
@@ -29,7 +31,7 @@ requirements:
     - pysam >=0.15.0
     - python
     - pywgsim >=0.3.3
-    - badread >=0.2.0
+    - badread >=0.4.0
     - minimap2 >=2.17
     - samtools >=1.9
 
diff --git a/recipes/vsearch/meta.yaml b/recipes/vsearch/meta.yaml
index 19b601ca2618a..c1aa24bd39cde 100644
--- a/recipes/vsearch/meta.yaml
+++ b/recipes/vsearch/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "2.23.0" %} 
-{% set sha256 = "4686e35e1d8488ffedb4c6dd4de9b6eccc94f337d7b86e1759d932bce59c9b64" %}
+{% set version = "2.28.1" %}
+{% set sha256 = "4f8bf0ad43fef77e573d152b59f55a1f81eb84c22d6545911757e6108f8de21c" %}
 
 package:
   name: vsearch
@@ -11,6 +11,8 @@ source:
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage('vsearch', max_pin="x") }}
 
 requirements:
   build:
@@ -36,11 +38,13 @@ test:
 about:
   home: https://github.com/torognes/vsearch
   license: GPL-3.0-or-later OR BSD-2-Clause
-  license_family: GPL
+  license_family: GPL3
   license_file: LICENSE.txt
-  summary: a versatile open source tool for metagenomics (USEARCH alternative)
+  summary: A versatile open source tool for metagenomics (USEARCH alternative)
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:vsearch
     - doi:10.7717/peerj.2584
diff --git a/recipes/vsnp3/meta.yaml b/recipes/vsnp3/meta.yaml
index f593899eebd55..8e7303c87efc2 100644
--- a/recipes/vsnp3/meta.yaml
+++ b/recipes/vsnp3/meta.yaml
@@ -1,7 +1,7 @@
 {% set user = "USDA-VS" %}
 {% set name = "vsnp3" %}
-{% set version = "3.14" %}
-{% set sha256 = "e161a8088c77e9eda188173101316f5d2e6ad505e74c5e1a70c5c73de01f0c3d" %}
+{% set version = "3.21" %}
+{% set sha256 = "5bb49fb4a26b80c6cb49652eb2fec5c16ffb57c71eddb0942074bcdeb2d93e99" %}
 
 package:
   name: {{ name|lower }}
@@ -10,6 +10,8 @@ package:
 build:
   number: 0
   noarch: generic
+  run_exports:
+    - {{ pin_subpackage('vsnp3', max_pin="x") }}
 
 source:
   url: https://github.com/{{ user }}/{{ name }}/archive/{{ version }}.tar.gz
@@ -17,7 +19,7 @@ source:
 
 requirements:
   run:
-    - python >=3.7
+    - python >=3.8,<3.10
     - bcftools
     - biopython >=1.79
     - bwa
@@ -26,23 +28,21 @@ requirements:
     - dask >=2022.01.1
     - freebayes >=1.3.5
     - humanize >=3.14.0
-    - numpy >=1.21, <=1.23
+    - numpy
     - openpyxl >=3.0.9
     - xlsxwriter >=3.0.2
-    - pandas >=1.4.0, <2.0
+    - pandas
     - parallel
     - pigz
     - regex >=2.5.110
     - samtools >=1.14
     - seqkit >=2.1.0
-    - vcflib
-    - vcftools
+    - vcflib =1.0.1
+    - vcftools =0.1.16
     - sourmash >=4.2.4
     - spades >=3.15.2
     - svgwrite >=1.4.1
-    - pyvcf
     - py-cpuinfo
-    - scikit-allel >=1.3.5
     - raxml >=8.2.12
     
 test:
diff --git a/recipes/vt/meta.yaml b/recipes/vt/meta.yaml
index b2f9584f8b7f0..d4d1cefbc1bdc 100644
--- a/recipes/vt/meta.yaml
+++ b/recipes/vt/meta.yaml
@@ -10,7 +10,9 @@ source:
   sha256: 8f06d464ec5458539cfa30f81a034f47fe7f801146fe8ca80c14a3816b704e17
 
 build:
-  number: 9
+  number: 10
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
 
 requirements:
   build:
@@ -38,3 +40,7 @@ about:
   home: https://genome.sph.umich.edu/wiki/Vt
   license: MIT
   summary: A tool set for manipulating and generating VCF files
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/vvv2_display/meta.yaml b/recipes/vvv2_display/meta.yaml
new file mode 100644
index 0000000000000..ca39ee7242eab
--- /dev/null
+++ b/recipes/vvv2_display/meta.yaml
@@ -0,0 +1,49 @@
+{% set name = "vvv2_display" %}
+{% set version = "0.2.1" %}
+{% set sha256 = "85d0b538d0e349474857dee9e048cd29a5e5f028f2d610003945cc1ec1709f53" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/ANSES-Ploufragan/vvv2_display/archive/refs/tags/{{version}}.tar.gz
+  sha256: {{ sha256 }}
+ 
+build:
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+  noarch: python
+  number: 0
+  script: {{ PYTHON }} -m pip install . -vv
+
+requirements:
+  host:
+    - pip
+    - python >=3.9
+    - setuptools >=57.4.0
+  run:
+    - pip
+    - python >=3.9
+    - r-ggplot2 >=3.4.4
+    - r-gridextra >=2.3
+    - r-cowplot >=1.1.1
+    - r-stringr >=1.5.1
+    - r-jsonlite >=1.8.8
+    - pysam >=0.19.1
+    - numpy >=1.23.3
+
+test:
+  commands:
+    - vvv2_display.py -h
+
+about:
+  home: https://github.com/ANSES-Ploufragan/vvv2_display/
+  license: GPL-3.0-only
+  license_family: GPL
+  license_file: LICENSE
+  summary: "Creates png image file with all [vardict] variants proportions alongside genome/assembly with annotations from [vadr]."
+
+extra:
+  recipe-maintainers:
+    - FTouzain
diff --git a/recipes/wbuild/meta.yaml b/recipes/wbuild/meta.yaml
index 4c458db94493f..e6daece1d4bd4 100644
--- a/recipes/wbuild/meta.yaml
+++ b/recipes/wbuild/meta.yaml
@@ -10,13 +10,15 @@ source:
   sha256: 50610c40028b81e6189ec0b39f97dd466ec04347df66f39e776b623b807543ba
 
 build:
-  number: 1
+  number: 2
   noarch: python
   entry_points:
     - wbuild=wbuild.cli:main
   script: 
     - sed -i.bak -e '/pytest-runner/d' -e '/[ \t]*#/d' setup.py
     - "{{ PYTHON }} -m pip install . -vv"
+  run_exports:     
+    - {{ pin_subpackage('wbuild', max_pin='x.x') }}
 
 requirements:
   host:
@@ -25,13 +27,13 @@ requirements:
     - click >=6.0
     - click-log
     - pyyaml >=4.2b1
-    - snakemake-minimal >=5.5.2
+    - snakemake-minimal >=5.5.2,<8.0.0
   run:
     - python >=3.5
     - click >=6.0
     - click-log
     - pyyaml >=4.2b1
-    - snakemake-minimal >=5.5.2
+    - snakemake-minimal >=5.5.2,<8.0.0
 
 test:
   imports:
diff --git a/recipes/weeder/meta.yaml b/recipes/weeder/meta.yaml
index c41db324ee25e..5cbce18083ea8 100644
--- a/recipes/weeder/meta.yaml
+++ b/recipes/weeder/meta.yaml
@@ -7,8 +7,10 @@ source:
   md5: 3401675b24ca928b7cc54ce9ebf18b6a
 
 build:
-  number: 8
+  number: 9
   skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage('weeder', max_pin="x") }}
 
 requirements:
   build:
@@ -26,6 +28,8 @@ about:
   summary: "Motif (transcription factor binding sites) discovery in sequences from coregulated genes of a single species. This is a new Weeder release rewritten to be faster and optimized for large ChIP-Seq data."
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   notes: "Includes a simple wrapper script to be able to run weeder from any directory. It passes arguments transparently to the weeder2 executable."
   identifiers:
     - biotools:weeder
diff --git a/recipes/wfa2-lib/build.sh b/recipes/wfa2-lib/build.sh
index 523f810bac3b2..1c1d621252dc4 100644
--- a/recipes/wfa2-lib/build.sh
+++ b/recipes/wfa2-lib/build.sh
@@ -5,13 +5,21 @@ export C_INCLUDE_PATH="${PREFIX}/include"
 export LIBRARY_PATH="${PREFIX}/lib"
 export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
 
+ARCH=$(uname -m)
+
+if [ "${ARCH}" == "aarch64" ]; then
+	export EXTRA_FLAGS="-ftree-vectorize"
+else
+	export EXTRA_FLAGS="-ftree-vectorize -msse2 -mfpmath=sse"
+fi
+
 cmake -S . -B build \
 	-DCMAKE_CXX_COMPILER="${CXX}" \
 	-DCMAKE_C_COMPILER="${CC}" \
-	-DCMAKE_CXX_FLAGS="-O3 -D_FILE_OFFSET_BITS=64 -I${PREFIX}/include ${LDFLAGS}" \
-	-DEXTRA_FLAGS="-ftree-vectorize -msse2 -mfpmath=sse" \
+	-DCMAKE_CXX_FLAGS="${CXXFLAGS} -O3 -D_FILE_OFFSET_BITS=64 -I${PREFIX}/include ${LDFLAGS}" \
+	-DEXTRA_FLAGS="${EXTRA_FLAGS}" \
 	-DCMAKE_BUILD_TYPE=Release \
 	-DCMAKE_INSTALL_PREFIX="${PREFIX}" \
-	-DBUILD_SHARED_LIBS=ON
+	-DOPENMP=TRUE
 
-cmake --build build/ --target install -v
+cmake --build build/ --target install -j ${CPU_COUNT} -v
diff --git a/recipes/wfa2-lib/makefile.patch b/recipes/wfa2-lib/makefile.patch
deleted file mode 100644
index 30322d25a8599..0000000000000
--- a/recipes/wfa2-lib/makefile.patch
+++ /dev/null
@@ -1,141 +0,0 @@
-diff --git a/CMakeLists.txt b/CMakeLists.txt
-index ab399ba..07d6874 100644
---- a/CMakeLists.txt
-+++ b/CMakeLists.txt
-@@ -59,8 +59,8 @@ if (${CMAKE_BUILD_TYPE} MATCHES Release)
- endif()
- 
- if ((${CMAKE_BUILD_TYPE} MATCHES Release) OR (${CMAKE_BUILD_TYPE} MATCHES RelWithDebInfo))
--  SET(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OpenMP_C_FLAGS} ${OPTIMIZE_FLAGS}")
--  SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS} ${OPTIMIZE_FLAGS}")
-+  SET(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OPTIMIZE_FLAGS}")
-+  SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OPTIMIZE_FLAGS}")
- endif ()
- 
- if (${CMAKE_BUILD_TYPE} MATCHES "Debug")
-@@ -150,6 +150,11 @@ target_include_directories(wfa2_static PUBLIC . wavefront utils)
- add_library(wfa2::wfa2 ALIAS wfa2)
- add_library(wfa2::wfa2_static ALIAS wfa2_static)
- 
-+if(OPENMP)
-+  target_link_libraries(wfa2_static PRIVATE OpenMP::OpenMP_C)
-+  target_link_libraries(wfa2 PRIVATE OpenMP::OpenMP_C)
-+endif(OPENMP)
-+
- # ---- C++ binding library
- 
- set(wfa2cpp_SOURCE
-@@ -163,13 +168,18 @@ add_library(wfa2cpp SHARED ${wfa2cpp_SOURCE})
- set_target_properties(wfa2cpp PROPERTIES SOVERSION 0)
- set_target_properties(wfa2cpp_static PROPERTIES OUTPUT_NAME wfa2cpp)
- target_link_libraries(wfa2cpp PUBLIC wfa2)
--target_link_libraries(wfa2cpp_static PUBLIC wfa2)
-+target_link_libraries(wfa2cpp_static PUBLIC wfa2_static)
- add_library(wfa2::wfa2cpp ALIAS wfa2cpp)
- add_library(wfa2::wfa2cpp_static ALIAS wfa2cpp_static)
- 
-+if(OPENMP)
-+  target_link_libraries(wfa2cpp_static PRIVATE OpenMP::OpenMP_CXX)
-+  target_link_libraries(wfa2cpp PRIVATE OpenMP::OpenMP_CXX)
-+endif(OPENMP)
-+
- # ---- Get version
- 
--file (STRINGS "VERSION" BUILD_NUMBER)
-+file (STRINGS "VERSION.txt" BUILD_NUMBER)
- add_definitions(-DWFA2LIB_VERSION="${BUILD_NUMBER}")
- add_definitions(-DVERSION="${BUILD_NUMBER}")
- 
-diff --git a/Makefile b/Makefile
-index 37ca094..4f0ced3 100644
---- a/Makefile
-+++ b/Makefile
-@@ -12,7 +12,7 @@ UNAME=$(shell uname)
- CC:=$(CC)
- CPP:=$(CXX)
- 
--CC_FLAGS=-Wall -g
-+CC_FLAGS=-Wall -g -fPIE
- 
- AR=ar
- AR_FLAGS=-rsc
-diff --git a/VERSION b/VERSION.txt
-similarity index 100%
-rename from VERSION
-rename to VERSION.txt
-diff --git a/alignment/cigar.c b/alignment/cigar.c
-index 4c4efe3..b79f06c 100644
---- a/alignment/cigar.c
-+++ b/alignment/cigar.c
-@@ -494,10 +494,10 @@ void cigar_print_pretty(
-   }
-   // Print alignment pretty
-   fprintf(stream,"      ALIGNMENT\t");
--  cigar_print(stderr,cigar,true);
-+  cigar_print(stream,cigar,true);
-   fprintf(stream,"\n");
-   fprintf(stream,"      ALIGNMENT.COMPACT\t");
--  cigar_print(stderr,cigar,false);
-+  cigar_print(stream,cigar,false);
-   fprintf(stream,"\n");
-   fprintf(stream,"      PATTERN    %s\n",pattern_alg);
-   fprintf(stream,"                 %s\n",ops_alg);
-diff --git a/bindings/cpp/WFAligner.hpp b/bindings/cpp/WFAligner.hpp
-index 373bb2d..8da82bb 100644
---- a/bindings/cpp/WFAligner.hpp
-+++ b/bindings/cpp/WFAligner.hpp
-@@ -33,6 +33,7 @@
- #define BINDINGS_CPP_WFALIGNER_HPP_
- 
- #include <string>
-+#include <cstdint>
- 
- #include "../../wavefront/wfa.hpp"
- 
-diff --git a/utils/commons.h b/utils/commons.h
-index a1f0132..7d60243 100644
---- a/utils/commons.h
-+++ b/utils/commons.h
-@@ -31,6 +31,7 @@
- 
- #pragma once
- 
-+#include <stdint.h>
- #include <stdio.h>
- #include <stdlib.h>
- #include <unistd.h>
-diff --git a/utils/vector.h b/utils/vector.h
-index 2c5dcf0..4bd4776 100644
---- a/utils/vector.h
-+++ b/utils/vector.h
-@@ -33,6 +33,8 @@
- #ifndef VECTOR_H_
- #define VECTOR_H_
- 
-+#include <stdint.h>
-+
- /*
-  * Checkers
-  */
-diff --git a/wavefront/wavefront_heuristic.c b/wavefront/wavefront_heuristic.c
-index 51d414c..73ada3e 100644
---- a/wavefront/wavefront_heuristic.c
-+++ b/wavefront/wavefront_heuristic.c
-@@ -518,6 +518,9 @@ void wavefront_heuristic_cufoff(
-   if (mwavefront == NULL || mwavefront->lo > mwavefront->hi) return;
-   // Decrease wait steps
-   --(wf_heuristic->steps_wait);
-+  // Save lo/hi base
-+  const int hi_base = mwavefront->hi;
-+  const int lo_base = mwavefront->lo;
-   // Select heuristic (WF-Adaptive)
-   if (wf_heuristic->strategy & wf_heuristic_wfadaptive) {
-     wavefront_heuristic_wfadaptive(wf_aligner,mwavefront,false);
-@@ -537,6 +540,7 @@ void wavefront_heuristic_cufoff(
-     wavefront_heuristic_banded_adaptive(wf_aligner,mwavefront);
-   }
-   // Check wavefront length
-+  if (lo_base == mwavefront->lo && hi_base == mwavefront->hi) return; // No wavefronts pruned
-   if (mwavefront->lo > mwavefront->hi) mwavefront->null = true;
-   // DEBUG
-   // const int wf_length_base = hi_base-lo_base+1;
diff --git a/recipes/wfa2-lib/meta.yaml b/recipes/wfa2-lib/meta.yaml
index 99820f92ec104..dc5ce51a913f7 100644
--- a/recipes/wfa2-lib/meta.yaml
+++ b/recipes/wfa2-lib/meta.yaml
@@ -1,6 +1,6 @@
-{% set name = "WFA2-lib" %}
-{% set version = "2.3.3" %}
-{% set sha256 = "2569650cdba395f42513a4d2c9175724a736047bb7da99a162c0abdbd651698f" %}
+{% set name = "wfa2-lib" %}
+{% set version = "2.3.5" %}
+{% set sha256 = "2609d5f267f4dd91dce1776385b5a24a2f1aa625ac844ce0c3571c69178afe6e" %}
 
 package:
   name: {{ name|lower }}
@@ -9,11 +9,11 @@ package:
 source:
   url: https://github.com/smarco/WFA2-lib/archive/refs/tags/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
-  patches:
-    - makefile.patch
 
 build:
   number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   build:
@@ -23,6 +23,8 @@ requirements:
   host:
     - pkg-config
     - rhash  # [osx]
+    - libgomp  # [linux]
+    - llvm-openmp  # [osx]
 
 test:
   commands:
@@ -32,10 +34,15 @@ test:
 about:
   home: "https://github.com/smarco/WFA2-lib"
   license: MIT
+  license_family: MIT
   license_file: LICENSE
   summary: "Wavefront alignment algorithm library v2"
+  dev_url: "https://github.com/smarco/WFA2-lib"
+  doc_url: "https://github.com/smarco/WFA2-lib/blob/main/README.md"
 
 extra:
   identifiers:
     - doi:10.1093/bioinformatics/btaa777
     - doi:10.1101/2022.04.14.488380
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/wfmash/build.sh b/recipes/wfmash/build.sh
index c12cec8e5c690..579fb82dd2ac1 100644
--- a/recipes/wfmash/build.sh
+++ b/recipes/wfmash/build.sh
@@ -1,4 +1,5 @@
 #!/bin/bash
+set -ex
 export LIBRARY_PATH=${PREFIX}/lib
 export LD_LIBRARY_PATH=${PREFIX}/lib
 export CPATH=${PREFIX}/include
@@ -9,6 +10,14 @@ export CXX_INCLUDE_PATH=${PREFIX}/include
 sed -i 's/-march=native/-march=sandybridge/g' src/common/wflign/deps/WFA2-lib/Makefile
 cmake -H. -Bbuild -DCMAKE_BUILD_TYPE=Generic -DEXTRA_FLAGS='-march=sandybridge -Ofast'
 cmake --build build
+
+# Libraries aren't getting installed
+mkdir -p $PREFIX/lib
+mv $SRC_DIR/build/lib/libwfa2cpp.so.0 $PREFIX/lib
+mv $SRC_DIR/build/lib/libwfa2cpp.so $PREFIX/lib
+mv $SRC_DIR/build/lib/libwfa2.so.0 $PREFIX/lib
+mv $SRC_DIR/build/lib/libwfa2.so $PREFIX/lib
+
 mkdir -p $PREFIX/bin
 mv build/bin/* $PREFIX/bin
 mv scripts/split_approx_mappings_in_chunks.py $PREFIX/bin
diff --git a/recipes/wfmash/meta.yaml b/recipes/wfmash/meta.yaml
index bff1da3d17af1..2bbc5782c2ab6 100644
--- a/recipes/wfmash/meta.yaml
+++ b/recipes/wfmash/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "wfmash" %}
-{% set version = "0.10.4" %}
+{% set version = "0.13.1" %}
 
 package:
   name: "{{ name }}"
@@ -7,10 +7,12 @@ package:
 
 source:
   url: https://github.com/waveygang/{{ name }}/releases/download/v{{ version }}/{{ name }}-v{{ version }}.tar.gz
-  sha256: c86015038e109e3de8cb2ac849514f822b1a0cbf64897f50d57d8ef2e9743d91
+  sha256: dd6e70dab1b4aacec252f52c2298dbfe95c1d5310d45f2e45b6a09a95d360401
 
 build:
-  skip: True  # [osx]
+  skip: True # [osx]
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
   number: 0
 
 requirements:
@@ -25,8 +27,10 @@ requirements:
     - zlib
     - jemalloc
     - htslib
+    - libblas
   run:
     - llvm-openmp  # [osx]
+    - python >=3.7
 
 test:
   commands:
diff --git a/recipes/wgatools/build.sh b/recipes/wgatools/build.sh
new file mode 100644
index 0000000000000..2fd3e311f3e0a
--- /dev/null
+++ b/recipes/wgatools/build.sh
@@ -0,0 +1,14 @@
+#!/bin/bash -euo
+
+# Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
+# We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
+export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="${BUILD_PREFIX}/.cargo"
+
+export LIBRARY_PATH="${PREFIX}/lib"
+export INCLUDE_PATH="${PREFIX}/include"
+export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
+export CXXFLAGS="${CXXFLAGS} -O3 -I${PREFIX}/include"
+
+# build statically linked binary with Rust
+RUST_BACKTRACE=1
+cargo install --verbose --path . --root ${PREFIX}
diff --git a/recipes/wgatools/meta.yaml b/recipes/wgatools/meta.yaml
new file mode 100644
index 0000000000000..2fb2d046aebfa
--- /dev/null
+++ b/recipes/wgatools/meta.yaml
@@ -0,0 +1,43 @@
+{% set name = "wgatools" %}
+{% set version = "0.1.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/wjwei-handsome/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: a03f0b6c843f8566aebaa9486292fbcb37d7e900c2f1c4691b0c9340b96fd892 
+
+build:
+  number: 1
+  run_exports:
+      - {{ pin_subpackage(name, max_pin='x.x') }}
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ compiler('rust') }}
+    - make
+    - cmake
+    - pkg-config
+  host:
+    - openssl
+  run:
+    - perl
+
+test:
+  commands:
+    - wgatools --help
+
+about:
+  home: https://github.com/wjwei-handsome/{{ name }}
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "A Rust library and tools for whole genome alignment files"
+  dev_url: https://github.com/wjwei-handsome/{{ name }}
+
+extra:
+  recipe-maintainers:
+    - AndreaGuarracino
diff --git a/recipes/wgd/meta.yaml b/recipes/wgd/meta.yaml
index 406a9d28353b2..656dea22642d3 100644
--- a/recipes/wgd/meta.yaml
+++ b/recipes/wgd/meta.yaml
@@ -1,24 +1,29 @@
-{% set version = "2.0.20" %}
+{% set name = "wgd" %}
+{% set version = "2.0.38" %}
 
 package:
-  name: "wgd"
+  name: {{ name }}
   version: {{ version }}
 
 source:
   url: https://pypi.io/packages/source/w/wgd/wgd-{{ version }}.tar.gz
-  sha256: a4e90266b6efb737b47140f7ed04594ab26904d67b11333674616574e8aa56a7
+  sha256: f7caa0d57a570aebdb4ab972835c1d3f08d15e70efe34a9b73d09f80d8ae5f94
 
 build:
   number: 0
   noarch: python
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
+  entry_points:
+    - wgd=cli:cli
+  run_exports:
+    - {{ pin_subpackage('wgd', max_pin='x') }}
 
 requirements:
   host:
     - pip
-    - python >=3.6,<=3.9
+    - python >=3.6,<3.10
   run:
-    - python >=3.6,<=3.9
+    - python >=3.6,<3.10
     - mafft
     - paml
     - diamond
@@ -29,7 +34,16 @@ test:
     - wgd
 
 about:
-  home: https://github.com/heche-psb/wgd
-  license: GPL-3.0
+  home: "https://github.com/heche-psb/wgd"
+  license: "GPL-3.0-or-later"
+  license_family: GPL3
   license_file: LICENSE
-  summary: a suite tool of WGD inference and timing
+  summary: "wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication"
+  dev_url: "https://github.com/heche-psb/wgd"
+  doc_url: "https://wgdv2.readthedocs.io/en/latest/"
+
+extra:
+  identifiers:
+    - biotools:wgd
+    - doi:10.1007/978-1-0716-2561-3_1 
+    - doi:10.1093/bioinformatics/btae272
diff --git a/recipes/whatshap/meta.yaml b/recipes/whatshap/meta.yaml
index 0a939672f0d50..a1beb335da415 100644
--- a/recipes/whatshap/meta.yaml
+++ b/recipes/whatshap/meta.yaml
@@ -1,14 +1,18 @@
 package:
   name: whatshap
-  version: "2.0"
+  version: "2.3"
 
 source:
-  url: https://files.pythonhosted.org/packages/c3/10/b53674fa02c1d5b23887f5a6b0fbf6936ce35dcd08f65e994c18601b20cb/whatshap-2.0.tar.gz
-  sha256: a23949e692047ab0549ea3309c2b70d95de17a01d00cbc8b2f4c8baf467f8e6a
+  url: https://files.pythonhosted.org/packages/37/99/7f156642064fe65aabbe6fa044a485e2aae6437dd545a9d539c06c1535dd/whatshap-2.3.tar.gz
+  sha256: 1f7ac47b18784b213492e4b92dddc63132d371b2f353660462536bcadc15e62e
 
 build:
-  script: python -m pip install --no-deps --ignore-installed .
   number: 0
+  # Unexplicable CI failure, feel free to try to make this work again
+  skip: true  # [osx]
+  script: python -m pip install --no-deps --ignore-installed .
+  run_exports:
+    - {{ pin_subpackage('whatshap', max_pin="x") }}
 
 requirements:
   build:
@@ -44,6 +48,8 @@ about:
   summary: 'phase genomic variants using DNA sequencing reads (haplotype assembly)'
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:whatshap
     - doi:10.1089/cmb.2014.0157
diff --git a/recipes/wise2/meta.yaml b/recipes/wise2/meta.yaml
index cdc27595f5017..0852d41a13f5b 100644
--- a/recipes/wise2/meta.yaml
+++ b/recipes/wise2/meta.yaml
@@ -5,13 +5,15 @@ package:
   version: '{{ version }}'
 
 source:
-  url: https://www.ebi.ac.uk/~birney/wise2/wise{{ version }}.tar.gz
+  url: https://www.ebi.ac.uk/~birney/wise{{ version }}.tar.gz
   sha256: 240e2b12d6cd899040e2efbcb85b0d3c10245c255f3d07c1db45d0af5a4d5fa1
   patches:
     - patch
 
 build:
-  number: 4
+  number: 5
+  run_exports:
+    - {{ pin_subpackage("wise2", max_pin='x.x') }}
 
 requirements:
   build:
@@ -32,3 +34,7 @@ about:
   home: https://www.ebi.ac.uk/~birney/wise2/
   license: Public Domain
   summary: The Wise2.4 package is the "revival" release of Wise2
+
+extra:
+  additional-platforms:
+    - linux-aarch64
diff --git a/recipes/wise2/patch b/recipes/wise2/patch
index 02df512f42706..8a63165a5c093 100644
--- a/recipes/wise2/patch
+++ b/recipes/wise2/patch
@@ -23,3 +23,29 @@ index 7fd404a..4fbb930 100644
  
  # These are the CFLAGS to use. These days Wise2 is inherently
  # pthreaded, and everything is compiled with threads. However
+diff --git a/src/dnaindex/compressed_protein_index.c b/src/dnaindex/compressed_protein_index.c
+index 00720b5..85227d0 100644
+--- a/src/dnaindex/compressed_protein_index.c
++++ b/src/dnaindex/compressed_protein_index.c
+@@ -199,7 +199,7 @@ boolean add_direct_number_CompressedProteinIndex(void * data,int seq_number,Sequ
+ {
+   fatal("For compressed protein indexes, impossible to add numbers directly");
+ 
+-  return NULL;
++  return FALSE;
+ }
+ 
+ # line 226 "compressed_protein_index.dy"
+diff --git a/src/models/motifmatrix.c b/src/models/motifmatrix.c
+index 8c6a8aa..bfb2270 100644
+--- a/src/models/motifmatrix.c
++++ b/src/models/motifmatrix.c
+@@ -407,7 +407,7 @@ MotifConsMatrix * MotifConsMatrix_alloc_matrix(int leni,int lenj)
+ 
+     for(i=0;i<leni;i++)  {  
+       for(j=0;j<lenj;j++)    
+-        out->mat[i][j] = NULL;   
++        out->mat[i][j] = '0';   
+       }  
+ 
+ 
\ No newline at end of file
diff --git a/recipes/wisecondorx/meta.yaml b/recipes/wisecondorx/meta.yaml
index bcfd7b6e9b74d..c32c17e5562fa 100644
--- a/recipes/wisecondorx/meta.yaml
+++ b/recipes/wisecondorx/meta.yaml
@@ -1,25 +1,26 @@
-{% set version="1.2.5" %}
+{% set version="1.2.7" %}
 package:
   name: wisecondorx
   version:  {{ version }}
 
 source:
   url: https://github.com/CenterForMedicalGeneticsGhent/wisecondorX/archive/v{{ version }}.tar.gz
-  sha256: be60c95630cd89977f445b68f11560360ef10d6c994ea3028c0d0295fc7452c9
+  sha256: 4597377e664afd5b4d78f92061d854186bbaba92ba9951f034e9e7ce4c2d1c29
 
 build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps -vv"
+  run_exports:
+    - {{ pin_subpackage('wisecondorx', max_pin="x") }}
 
 requirements:
   host:
-    - python
+    - python >=3.6
     - setuptools
   run:
-    - python
+    - python >=3.6
     - pysam
-    - futures # [not py3k]
     - scipy
     - scikit-learn
     - numpy
@@ -30,7 +31,7 @@ requirements:
 
 test:
   imports:
-    - wisecondorX
+    - wisecondorx
   commands:
     - WisecondorX --help
     - WisecondorX convert --help
diff --git a/recipes/woltka/meta.yaml b/recipes/woltka/meta.yaml
index 0eb7ddeaedf5b..f5fdbff852898 100644
--- a/recipes/woltka/meta.yaml
+++ b/recipes/woltka/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "woltka" %}
-{% set version = "0.1.5" %}
+{% set version = "0.1.6" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,14 +7,16 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: e97f84ba5044aec8aae7f54dc42a4172c0972a3ca008e4cf7909d364496fa16d
+  sha256: d1ffe069515284f6350e3129b5fa3a65b4a583105282c5af0a3997c30b7f8e99
 
 build:
   number: 0
   noarch: python
   entry_points:
     - woltka=woltka.cli:cli
-  script: "{{ PYTHON }} -m pip install . -vv"
+  script: "{{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation"
+  run_exports:
+    - {{ pin_subpackage("woltka", max_pin="x.x") }}
 
 requirements:
   host:
@@ -37,9 +39,9 @@ test:
 
 about:
   home: "https://github.com/qiyunzhu/woltka"
-  license: BSD
+  license: BSD-3-Clause
   license_family: BSD
-  license_file: 
+  license_file: LICENSE
   summary: "versatile meta-omic data classifier"
   doc_url: 
   dev_url: 
diff --git a/recipes/xengsort/meta.yaml b/recipes/xengsort/meta.yaml
new file mode 100644
index 0000000000000..64fbad850f790
--- /dev/null
+++ b/recipes/xengsort/meta.yaml
@@ -0,0 +1,53 @@
+{% set name = "xengsort" %}
+{% set version = "2.0.5" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
+  sha256: 243567ee3bdb7111ca7294c5979c2cd9ab5e76fdeefd30b7e27a177c839b33c9
+
+build:
+  number: 0
+  entry_points:
+    - xengsort = xengsort.xengsort.xengsort_main:main
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+  noarch: python
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+
+requirements:
+  host:
+    - pip
+    - python ==3.11
+  run:
+    - python ==3.11
+    - numpy >=1.22
+    - numba >=0.56
+    - zarr
+    - pytest
+    - pyyaml
+    - jsonargparse
+
+test:
+  imports:
+    - xengsort
+  commands:
+    - xengsort --help
+    - xengsort index --help
+    - xengsort classify --help
+
+about:
+  home: https://gitlab.com/genomeinformatics/xengsort
+  license: MIT
+  license_file: LICENSE
+  license_family: MIT
+  summary: "A fast xenograft read sorter based on space-efficient k-mer hashing"
+
+extra:
+  identifiers:
+    - doi:10.4230/LIPIcs.WABI.2020.4
+  recipe-maintainers:
+    - JZentgraf
diff --git a/recipes/xxmotif/conda_build_config.yaml b/recipes/xxmotif/conda_build_config.yaml
new file mode 100644
index 0000000000000..8caf245450f76
--- /dev/null
+++ b/recipes/xxmotif/conda_build_config.yaml
@@ -0,0 +1,5 @@
+c_compiler_version:
+  - 10 # [linux]
+
+cxx_compiler_version:
+  - 10 # [linux]
diff --git a/recipes/xxmotif/fix-build.patch b/recipes/xxmotif/fix-build.patch
new file mode 100644
index 0000000000000..def99e58bc24e
--- /dev/null
+++ b/recipes/xxmotif/fix-build.patch
@@ -0,0 +1,32 @@
+diff --git CMakeLists.txt CMakeLists.txt
+index 85c64b6..100a843 100644
+--- CMakeLists.txt
++++ CMakeLists.txt
+@@ -9,7 +9,7 @@ set(XXMOTIF_PATCH_VERSION 6)
+ set(XXMOTIF_VERSION ${XXMOTIF_MAJOR_VERSION}.${XXMOTIF_MINOR_VERSION}.${XXMOTIF_PATCH_VERSION})
+ 
+ 
+-set(CMAKE_CXX_FLAGS "-std=c++11 -DLOG_MAX_LEVEL=0 -D__GXX_EXPERIMENTAL_CXX0X__ -O3 -g3 -pedantic -pedantic-errors -Wall -fmessage-length=0 -fno-strict-aliasing -Wconversion")
++set(CMAKE_CXX_FLAGS "-std=c99 -DLOG_MAX_LEVEL=0 -D__GXX_EXPERIMENTAL_CXX0X__ -O3 -g3 -pedantic -pedantic-errors -Wall -fmessage-length=0 -fno-strict-aliasing -Wconversion")
+ 
+ set(CMAKE_C_FLAGS "-D__GXX_EXPERIMENTAL_CXX0X__ -O3 -pedantic -pedantic-errors -Wall -fmessage-length=0 -Wconversion")
+ 
+diff --git src/memoryPool/pool_alloc.h src/memoryPool/pool_alloc.h
+index c1fe05b..925f31d 100644
+--- src/memoryPool/pool_alloc.h
++++ src/memoryPool/pool_alloc.h
+@@ -90,4 +90,14 @@ private:
+ 
+ template <class T> Pool Pool_alloc<T>::mem(sizeof(T));
+ 
++template <class T, class U, std::size_t N>
++inline bool operator==(const Pool_alloc<T>& a, const Pool_alloc<U>& b){
++    return &a == &b;
++}
++
++template <class T, class U>
++inline bool operator!=(const Pool_alloc<T>& a, const Pool_alloc<U>& b){
++    return &a != &b;
++}
++
+ #endif /* POOL_ALLOC_H */
diff --git a/recipes/xxmotif/meta.yaml b/recipes/xxmotif/meta.yaml
index 8b48a8ae15c6d..d5711f3c9b718 100644
--- a/recipes/xxmotif/meta.yaml
+++ b/recipes/xxmotif/meta.yaml
@@ -7,10 +7,14 @@ package:
 source:
   url: https://github.com/soedinglab/xxmotif/archive/{{ version }}.tar.gz
   sha256: 235eb8ad562c4757a549751bb290f443ff70c29a142edbff0f03440f097b61cb
+  patches:
+    - fix-build.patch
 
 build:
-  number: 3
+  number: 4
   skip: True # [osx]
+  run_exports:
+    - {{ pin_subpackage('xxmotif', max_pin="x") }}
 
 requirements:
   build:
@@ -29,3 +33,7 @@ about:
 test:
   commands:
     - test -f ${PREFIX}/bin/XXmotif
+
+extra:
+  additional-platforms:
+    - linux-aarch64
\ No newline at end of file
diff --git a/recipes/yacht/meta.yaml b/recipes/yacht/meta.yaml
new file mode 100644
index 0000000000000..660b5f47c822d
--- /dev/null
+++ b/recipes/yacht/meta.yaml
@@ -0,0 +1,77 @@
+{% set version = "1.2.2" %}
+
+package:
+  name: yacht
+  version: {{ version }}
+
+source:
+  url: https://github.com/KoslickiLab/YACHT/releases/download/v{{ version  }}/yacht-{{ version  }}.tar.gz
+  sha256: a5c97eecac7aee24e5850f29537cfe5f0b3647ac2766b7876321d369e8bdf514
+
+build:
+  number: 0
+  noarch: python
+  skip: True  # [win or osx]
+  script: "{{ PYTHON  }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
+  run_exports:
+    - {{ pin_subpackage('yacht', max_pin="x") }}
+
+requirements:
+  host:
+    - python >3.6
+    - pip
+    - pandas
+    - pytaxonkit
+    - scipy
+    - sourmash
+    - loguru
+    - tqdm
+    - biom-format
+    - numpy
+  run:
+    - python >3.6
+    - sourmash >=4.8.3,<5
+    - scipy
+    - numpy
+    - pandas
+    - scikit-learn
+    - codecov
+    - pytest
+    - pytest-cov
+    - loguru
+    - tqdm
+    - biom-format
+    - pytaxonkit
+    - openpyxl
+    - sourmash_plugin_branchwater
+
+test:
+  commands:
+    - yacht --help
+
+about:
+  home: https://github.com/KoslickiLab/YACHT
+  summary: 'YACHT is a mathematically rigorous hypothesis test for the presence or absence of organisms in a metagenomic sample, based on average nucleotide identity (ANI).'
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE.txt
+  dev_url: https://github.com/KoslickiLab/YACHT
+  doc_url: https://github.com/KoslickiLab/YACHT/wiki
+
+extra:
+  skip-lints:
+    - should_not_be_noarch_skip
+    - should_use_compilers
+  identifiers:
+    - doi:10.1101/2023.04.18.537298
+  recipe-maintainers:
+    - dkoslicki
+  authors:
+    - dkoslicki
+    - chunyuma
+    - sew347
+    - mlupei
+    - mfl15
+    - ShaopengLiu1
+    - raquellewei
+    - mohsenht
diff --git a/recipes/yaggo/meta.yaml b/recipes/yaggo/meta.yaml
index 335fb1eff3534..a800d0084bca4 100644
--- a/recipes/yaggo/meta.yaml
+++ b/recipes/yaggo/meta.yaml
@@ -7,7 +7,9 @@ package:
 
 build:
   noarch: generic
-  number: 0
+  number: 1
+  run_exports:
+    - {{ pin_subpackage("yaggo", max_pin='x.x') }}
 
 source:
   url: https://github.com/gmarcais/yaggo/releases/download/v{{version}}/yaggo
diff --git a/recipes/zdb/build.sh b/recipes/zdb/build.sh
index 7314ffce65edc..a61c80dfcb6b0 100644
--- a/recipes/zdb/build.sh
+++ b/recipes/zdb/build.sh
@@ -9,4 +9,4 @@ sed "s=version=$PKG_VERSION=" bin/zdb > ${PREFIX}/bin/zdb
 
 chmod u+x ${PREFIX}/bin/zdb
 
-mv bin/ annotation_pipeline.nf nextflow.config db_setup.nf zdb/ conda/ webapp FAQ.txt README.md ${ZDB_DIR}
\ No newline at end of file
+mv bin/ annotation_pipeline.nf zdb_base nextflow.config db_setup.nf zdb/ conda/ webapp FAQ.txt README.md ${ZDB_DIR}
diff --git a/recipes/zdb/meta.yaml b/recipes/zdb/meta.yaml
index 0dfed1fc3b44d..508c74054ba0c 100644
--- a/recipes/zdb/meta.yaml
+++ b/recipes/zdb/meta.yaml
@@ -1,20 +1,23 @@
-{% set version = "1.1.1" %}
+{% set version = "1.2.3" %}
 
 package:
   name: zdb
   version: {{ version }}
 
 build:
-  number: 0
   noarch: generic
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('zdb', max_pin="x.x") }}
 
 source:
-  url: https://github.com/metagenlab/zDB/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 56d1cd7ec82b45d015a0d0323adc72271152ee363506c7f1cfc1593c6acb8d8d 
+  url: https://github.com/metagenlab/zDB/archive/refs/tags/v1.2.3.tar.gz
+  sha256: b73a72cce424c1db28ccb0f1be20cbf61855260bb957e2829a6d9f991a20c029
 
 requirements:
   run:
-    - nextflow >=21.04.0
+    - nextflow >=21.04.0,<=22.10.8
+    - mamba
 
 test:
   commands:
diff --git a/recipes/zol/build.sh b/recipes/zol/build.sh
index bcc83a2eb4246..09a586f99e46e 100644
--- a/recipes/zol/build.sh
+++ b/recipes/zol/build.sh
@@ -14,7 +14,10 @@ cp zol/orthologs/runRBH ${PREFIX}/bin/
 cp zol/orthologs/splitDiamondResults ${PREFIX}/bin/
 cp zol/splitDiamondResultsForFai ${PREFIX}/bin/
 cp zol/clusterHeatmap.R ${PREFIX}/bin/
+cp zol/plotTinyAAI.R ${PREFIX}/bin/
 cp zol/plotSegments.R ${PREFIX}/bin/
+cp zol/njTree.R ${PREFIX}/bin/
+cp zol/phyloHeatmap.R ${PREFIX}/bin/
 
 chmod +x ${PREFIX}/bin/runRBH
 chmod +x ${PREFIX}/bin/splitDiamondResults
diff --git a/recipes/zol/meta.yaml b/recipes/zol/meta.yaml
index 670bc4bd49e89..4a7e78b31b0ae 100644
--- a/recipes/zol/meta.yaml
+++ b/recipes/zol/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "zol" %}
-{% set version = "1.3.6" %}
+{% set version = "1.4.1" %}
 
 package:
   name: {{ name|lower }}
@@ -7,12 +7,14 @@ package:
 
 source:
   url: https://github.com/Kalan-Lab/zol/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 7a7dc68fd2b119a49e19a825fedd889fd167693b514fc29fcc4e0be3c7fa6706
+  sha256: f9b45e4dfb4f1ec32bbb2b5f12eba4808c6b36f14396324837cd3f6f31346fad
 
 build:
   number: 0
   skip: True # [py <= 39]
-  
+  run_exports:
+    - {{ pin_subpackage('zol', max_pin='x.x') }}
+
 requirements:
   build:
      - {{ compiler('cxx') }}
@@ -33,6 +35,7 @@ requirements:
     - diamond =2.0.15
     - pyrodigal
     - prodigal
+    - prodigal-gv
     - pyhmmer
     - pandas >=2.0
     - xlsxwriter >=3.0.3
@@ -52,6 +55,8 @@ requirements:
     - trimal
     - gzip
     - miniprot =0.7
+    - bioconductor-ggtree
+    - ete3
 
 test:
   commands:
@@ -66,3 +71,4 @@ about:
   license_family: BSD
   summary: "zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters."
   dev_url: https://github.com/Kalan-Lab/zol
+